Citrus Sinensis ID: 006375
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 648 | 2.2.26 [Sep-21-2011] | |||||||
| Q59536 | 690 | Protease 2 OS=Moraxella l | N/A | no | 0.950 | 0.892 | 0.383 | 1e-128 | |
| P24555 | 686 | Protease 2 OS=Escherichia | N/A | no | 0.950 | 0.897 | 0.400 | 1e-118 | |
| P55656 | 705 | Uncharacterized peptidase | no | no | 0.945 | 0.869 | 0.3 | 4e-71 | |
| P55627 | 754 | Uncharacterized peptidase | no | no | 0.935 | 0.803 | 0.302 | 1e-68 | |
| P27028 | 705 | Prolyl endopeptidase OS=F | N/A | no | 0.887 | 0.815 | 0.280 | 2e-60 | |
| Q06903 | 690 | Prolyl endopeptidase OS=A | no | no | 0.884 | 0.830 | 0.285 | 7e-58 | |
| P27195 | 705 | Prolyl endopeptidase OS=E | N/A | no | 0.918 | 0.843 | 0.279 | 1e-55 | |
| Q32N48 | 707 | Prolyl endopeptidase-like | N/A | no | 0.807 | 0.739 | 0.286 | 1e-51 | |
| Q5ZKL5 | 732 | Prolyl endopeptidase-like | yes | no | 0.766 | 0.678 | 0.287 | 1e-51 | |
| Q8C167 | 725 | Prolyl endopeptidase-like | yes | no | 0.763 | 0.682 | 0.292 | 3e-45 |
| >sp|Q59536|PTRB_MORLA Protease 2 OS=Moraxella lacunata GN=ptrB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 247/644 (38%), Positives = 377/644 (58%), Gaps = 28/644 (4%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
++ + R+ ++ P + G ++YY+R + K+Y + R+ + + D E
Sbjct: 60 IYESMVDRVPDSEMKVPVQHGQFFYYSRLDKNKQYPIYARK---QAASRALLQDATE--- 113
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
++LD N AE + SV +++ D+ +AY E+ G + YT+Y+ D+ TG +
Sbjct: 114 -----EVVLDLNELAEEDDYLSVTVQRMTTDHSRLAYLENRDGTDRYTIYIKDLNTGELL 168
Query: 121 GK--PLVGVTASVEWAG-NEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYS 177
P V + S+EW + + Y T+DE RP + W H+L +D +D ++ EKDD ++
Sbjct: 169 SDRVPNVYIYGSMEWCRCGDYIFYTTVDEHQRPCQLWRHRLGSDVESDELIFEEKDDTFT 228
Query: 178 LGLQASESKKFLFIASESKITRFVFYLDVSKP-EELRVLTPRVVGVDTAASHRGNHFFIT 236
L + S+S KF+F+ S SK T + +D P L+++ R G+ H + I
Sbjct: 229 LFISKSQSGKFIFVYSSSKTTSEIHMIDTDSPLSPLQLVDERRDGILYDVEHWEDDLLIL 288
Query: 237 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYR 296
L N +LL CP+++ S ++ + E LQ++ F D L + RE GL +I
Sbjct: 289 TNEGAL-NFQLLRCPLNDLSSKVNVVEYNEERYLQEMYPFRDKLLIAGRENGLTQIWVVH 347
Query: 297 LPAVGEPLKSLQGGKSVEFIDPVYSIDP-SESVFSSRILRFHYSSLRTPPSVYDYDMDMG 355
+ + + + +P+Y++ SE + + + Y SL TP + + ++ G
Sbjct: 348 DGEL----------QQISWDEPLYTVAVLSEQSYDTNEVLIQYESLLTPKTTFGLNLQTG 397
Query: 356 ISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGS 415
++ V G +D + + E+ WA+ G ++P+ VY + + +G PL+LYGYGS
Sbjct: 398 EKQCLQVAPVSGEYDRSQFRQEQLWATGRSGVKVPMTAVYLEGALD-NGPAPLILYGYGS 456
Query: 416 YEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEY 475
Y +DP F+ RL LL++G +F AQ+RGG E+GR WYE+GK K+NTFTDFIA A++
Sbjct: 457 YGSNSDPRFDPYRLPLLEKGIVFVTAQVRGGSEMGRGWYEDGKMQNKRNTFTDFIAAAKH 516
Query: 476 LIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTT 535
LI Y + K+ G SAGGLL+GAV NM +LFK V AVPFVDV+TTMLD +IPLTT
Sbjct: 517 LIDQNYTSPTKMAARGGSAGGLLVGAVANMAGELFKVIVPAVPFVDVVTTMLDTSIPLTT 576
Query: 536 AEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLRE 595
EW+EWGDP K+E YFYMKSYSP DNV+A++YPH+ +T G+NDPRV Y EPAK+VA+LR
Sbjct: 577 LEWDEWGDPRKQEDYFYMKSYSPYDNVEAKDYPHMYITTGINDPRVGYFEPAKWVARLRA 636
Query: 596 MKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639
+KTD+N L+ K +GAGHF KSGRF L+EAA +Y F++ L +
Sbjct: 637 VKTDNNTLVMKTNMGAGHFGKSGRFNHLKEAAESYAFILDKLGV 680
|
Cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Moraxella lacunata (taxid: 477) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 8EC: 3 |
| >sp|P24555|PTRB_ECOLI Protease 2 OS=Escherichia coli (strain K12) GN=ptrB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust.
Identities = 263/656 (40%), Positives = 364/656 (55%), Gaps = 40/656 (6%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
+ E+ RI Q +VSAP+ + Y Y G EY + R+ + E D ET
Sbjct: 61 ILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQSAFSEEW-----DEWET-- 113
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
+LD N +A FYS+G ++PDN ++A AED Y + ++ETG
Sbjct: 114 -------LLDANKRAAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY 166
Query: 121 GKPLVGVTASVEWAGNEALVYITMDE--ILRPDKAWLHKLEADQSNDICLYHEKDDIYSL 178
+ L V S WA + + Y L P + W H + S D +Y EKDD Y +
Sbjct: 167 PELLDNVEPSFVWANDSWIFYYVRKHPVTLLPYQVWRHAIGTPASQDKLIYEEKDDTYYV 226
Query: 179 GLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITR 237
L + SK ++ I S T V LD + E V PR + + H + F++ R
Sbjct: 227 SLHKTTSKHYVVIHLASATTSEVRLLDAEMADAEPFVFLPRRKDHEYSLDHYQHRFYL-R 285
Query: 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 297
+ N L + + + LIP RE++ L+ LF D L V ER+ GL L
Sbjct: 286 SNRHGKNFGLYRTRMRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTS-----L 340
Query: 298 PAVGEPLKSLQGGKSVEFIDPVY----SIDPSESVFSSRILRFHYSSLRTPPSVYDYDMD 353
+ + + G + F DP Y + +P LR+ YSS+ TP ++++ DMD
Sbjct: 341 RQINRKTREVIG---IAFDDPAYVTWIAYNPEPETAR---LRYGYSSMTTPDTLFELDMD 394
Query: 354 MG-ISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVY-RKNLVKLDGSDPLLLY 411
G VLK+ E + GF NY +E W A DG ++P+ +VY RK+ K G +PLL+Y
Sbjct: 395 TGERRVLKQTE--VPGFYAANYRSEHLWIVARDGVEVPVSLVYHRKHFRK--GHNPLLVY 450
Query: 412 GYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIA 471
GYGSY D F+ SRLSLLDRGF++AI +RGGGELG+QWYE+GKFLKKKNTF D++
Sbjct: 451 GYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLD 510
Query: 472 CAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI 531
+ L+K Y + G SAGG+L+G +N RP+LF +A VPFVDV+TTMLD +I
Sbjct: 511 ACDALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESI 570
Query: 532 PLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVA 591
PLTT E+EEWG+P ++Y YMKSYSP DNV AQ YPH+LVT GL+D +V Y EPAK+VA
Sbjct: 571 PLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVA 630
Query: 592 KLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR-ALSMLPSVGSE 646
KLRE+KTDD++LL ++ +GH KSGRF+ A Y FL+ A LP+ ++
Sbjct: 631 KLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLVALAQGTLPATPAD 686
|
Cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Escherichia coli (strain K12) (taxid: 83333) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 8 EC: 3 |
| >sp|P55656|Y4SO_RHISN Uncharacterized peptidase y4sO OS=Rhizobium sp. (strain NGR234) GN=NGR_a01580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (689), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 198/660 (30%), Positives = 324/660 (49%), Gaps = 47/660 (7%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
+ AE++ R + PF+ G ++Y+ ++ G + RR +
Sbjct: 65 LIAEIEKRDSCDGAPPPFQVGFFFYFQKSQSGLLHSAWWRRPVTGG-------------- 110
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
PE L+ D N FYS+G + S D + +A++ D G+E Y + V D+ G +
Sbjct: 111 ---PEELVFDPNTLPGAEVFYSLGALEPSDDGRYIAFSFDLIGNERYELRVRDMTNGREI 167
Query: 121 GKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 180
+ + WA + ++ T + R + +L+ + ++ E ++ +L +
Sbjct: 168 WRD-PSRAGRLVWAADNRTLFFTRERADRRQHDRVVRLDVETGRSEVVFEEVNERLALVV 226
Query: 181 QASESKKFLFIA------SESKITRF---VFYLDVSKPEEL-RVLTPRVVGVDTAASHRG 230
+ S S +LFI S+I R V+ L +P ++ R + R +G + A H G
Sbjct: 227 RRSGSGAYLFIDVIITSDMSSRIQRAAAEVWCLPAERPTDMWRRILARELGHEIYAEHWG 286
Query: 231 NHFFITRRSDELFNSELLACPVDNTSET--TVLIPHRESVKLQDIQLFIDHLAVYEREGG 288
N F R +D N L+ +D+TS + ++PHR + L++I + +H+ V EREG
Sbjct: 287 NEFLF-RVNDTGPNLRLVRTAIDDTSPSRWQEVVPHRAGITLEEIHVLEEHVIVLEREGI 345
Query: 289 LQKITTY-RLPAVGEPLKSLQGGKSVEF-IDPVYSIDPSESVFSSRILRFHYSSLRTPPS 346
++ + R VG + ++ +V + S + + L + S TP
Sbjct: 346 QPRLVAHHRNGRVGPSIVPVEHSCTVTVGLSAGGSYSCARHPYRVSALTYKICSFVTPDI 405
Query: 347 VYDYDMDMGIS-VLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGS 405
+D+ S VL + T++ GF+ Y A A DG ++PI IV R++ + DG
Sbjct: 406 FIQHDLLTDKSKVLYR--TLVSGFEPELYEARVVMAKAEDGVEVPISIVARRDRGE-DG- 461
Query: 406 DPLLLYGYGSYEICNDPAF------NSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 459
P+LL YG Y + PAF ++RLSLLDRG F I +RGGGELGR W+E
Sbjct: 462 -PVLLNVYGCYGAQSLPAFFGWPSSMTARLSLLDRGVAFGIVHVRGGGELGRAWHEAATR 520
Query: 460 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519
+K+ T TD IA AE L+++ + +++ + IEGRSAGG + A +RPDLF+A +A VP
Sbjct: 521 DQKRLTHTDLIAAAECLVEHRFASRDGIVIEGRSAGGGTVLAAAVLRPDLFRAVLAEVPL 580
Query: 520 VDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKA-QNYPHILVTAGLND 578
D++ T LD T+P E E+GDP Y Y++SY P N+ + YP + A L+D
Sbjct: 581 ADIIDTELDFTLPYALRETAEYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYIDAALHD 640
Query: 579 PRVMYSEPAKFVAKLREMKTD-DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637
+V+Y +PA++VA+ R D D L+F+ + GH S EAAF +++ L
Sbjct: 641 SQVLYYQPARYVAQRRSKAVDRDPDLIFRTRMIGGHMGVSHGPGVAEEAAFRMAWILHRL 700
|
Rhizobium sp. (strain NGR234) (taxid: 394) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P55627|Y4QF_RHISN Uncharacterized peptidase y4qF OS=Rhizobium sp. (strain NGR234) GN=NGR_a01920 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (668), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 202/667 (30%), Positives = 319/667 (47%), Gaps = 61/667 (9%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
+ AE++GR E + PF+ G + Y+ G + RR + A
Sbjct: 96 LIAEIEGRQPCEGATPPFQVGPFDYFQGHERGLPHPVWWRRPVTGGSA------------ 143
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
L+LD N FY +G F+ S D + +A++ D G E Y + V D+ G V
Sbjct: 144 -----ELVLDPNAIPGADVFYWLGVFEPSDDGRYLAFSVDLIGAERYELRVRDMSDGRDV 198
Query: 121 GKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLH---KLEADQSNDICLYHEKDDIYS 177
+ G V WA + ++ T + RPD+ H +L + N ++ E ++ +
Sbjct: 199 WRD-AGSVGQVVWAADNHTLFFTRE---RPDRRQHHQIVRLNVGRGNSEVVFEEANERLA 254
Query: 178 LGLQASESKKFLF--IASESKITRFV-------FYLDVSKPE-ELRVLTPRVVGVDTAAS 227
+ ++ S+S +LF + + S ++ +V + L +P + R + R +G A
Sbjct: 255 VLVRRSQSGAWLFLDVLTTSDMSSYVQRGAAEVWCLPADEPGGQWRRIVMRELGHQIYAE 314
Query: 228 HRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFIDHLAVYER 285
H + F R D L++ P+D+ S + ++PHR V + +I + HL + ER
Sbjct: 315 HWYDRFLF-RVDDAGPYWRLVSAPIDDPSPSRWEEVVPHRAGVTIDEIHVLEQHLVLLER 373
Query: 286 EGGLQK-ITTYRLPAVG------EPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHY 338
EG + I+ R VG EP +++ G S YS + F S L +
Sbjct: 374 EGLRPRLISRNRSGRVGAVIVPDEPSCTIRVGLSA---GGCYSA--ARHPFRSSKLTYSV 428
Query: 339 SSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKN 398
SS TP + ++D SV+ E + G+D Y A A DG Q+PI +V R++
Sbjct: 429 SSFVTPDTFIEHDFANDRSVVL-CEARVPGYDATQYLATVVMAEAEDGVQVPISLVARRD 487
Query: 399 LVKLDGSDPLLLYGYGSYEICNDPAF------NSSRLSLLDRGFIFAIAQIRGGGELGRQ 452
P+LL YG Y I P+F ++RLSLLDR F I +RGGGELGR
Sbjct: 488 RTS---PGPVLLSVYGCYGIPRLPSFLAWPSSMTARLSLLDREVAFGIVHVRGGGELGRP 544
Query: 453 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKA 512
W++ +K+ T TD I+ E LI+ + T++ + IEG+S GG + A RP+LF+A
Sbjct: 545 WHDAATRDQKRITHTDLISATEGLIERGFATRDGVVIEGKSGGGGTVLATAVFRPNLFRA 604
Query: 513 AVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHIL 571
VA VP D++ T LD T+P T E E+GDP Y Y++SY P N+ + + P
Sbjct: 605 VVAEVPLADIIDTQLDSTMPYTLKETAEYGDPQDAYEYRYLRSYDPYYNLSPERSLPPTY 664
Query: 572 VTAGLNDPRVMYSEPAKFVAKLREMKTD-DNILLFKCELGAGHFSKSGRFERLREAAFTY 630
V A L+D +V+Y +PA++VA+ R TD D L+F+ + GH S +AAF
Sbjct: 665 VDAALDDGQVIYYQPARYVAQRRSCATDRDPDLVFRIRMVGGHSGPSHGPGIAEQAAFRM 724
Query: 631 TFLMRAL 637
+++ L
Sbjct: 725 AWVLDQL 731
|
Rhizobium sp. (strain NGR234) (taxid: 394) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P27028|PPCE_FLAME Prolyl endopeptidase OS=Flavobacterium meningosepticum GN=f1pep1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 185/660 (28%), Positives = 317/660 (48%), Gaps = 85/660 (12%)
Query: 12 EDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDE 71
E +SAPF++G Y Y+++ +G + + +++ +A A + LD
Sbjct: 95 EKISAPFKKGKYTYFSKN-DGLQ----AQSVLYRKDA-------------AGKTEVFLDP 136
Query: 72 NVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTAS- 130
N +E +G S+ + LVAY+ G + + ++D ET + + L+ V S
Sbjct: 137 NKFSE-KGTTSLASVSFNKKGTLVAYSISEGGSDWNKIIILDAETKKQLDETLLDVKFSG 195
Query: 131 VEWAGNEALVYITMDE---------ILRPDKAWLHKLEADQSND-ICLYHEKDDIYSLGL 180
+ W G+E Y + D+ + K + HKL QS D + + +K +G
Sbjct: 196 ISWLGDEGFFYSSYDKPKEGSVLSGMTDKHKVYFHKLGTKQSQDELIIGGDKFPRRYIGA 255
Query: 181 QASESKKFLFIASESKITRFVFYLDVSKPEELRVLT---PRVVGVDT---AASHRGNHFF 234
++ +++L +++ + Y+ ++L+ T P + G D+ A G+ +
Sbjct: 256 YVTDDQRYLVVSAANATNGNELYI-----KDLKNKTDFIPIITGFDSNVNVADTDGDTLY 310
Query: 235 ITRRSDELFNSELLACPVDNTSETT---VLIPHRESVKLQD---------IQLFIDHLAV 282
+ D N L+ + N T V+ E +++ ++ ID +
Sbjct: 311 LFTDKDAP-NKRLVKTTIQNPKAETWKDVIAETSEPLEINTGGGYFFATYMKDAIDQVKQ 369
Query: 283 YEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLR 342
Y++ G L + +LP G S GG+ E + L + +++
Sbjct: 370 YDKNGKL--VRAIKLPGSGNA--SGFGGEKTE-----------------KDLYYSFTNYI 408
Query: 343 TPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKL 402
TPP+++ Y++ G S + + V F+ NY +E+ + ++SDGT+IP+ I Y+K L K
Sbjct: 409 TPPTIFKYNVTTGNSEVYQKPKVK--FNPENYVSEQVFYTSSDGTKIPMMISYKKGLKK- 465
Query: 403 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 462
DG +P +LY YG + I PAF+ ++ G I+A+ IRGGGE G++W++ G ++K
Sbjct: 466 DGKNPTILYSYGGFNISLQPAFSVVNAIWMENGGIYAVPNIRGGGEYGKKWHDAGTKMQK 525
Query: 463 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDV 522
KN F DFIA EYL KN Y +KE + + GRS GGLL+GA + MRPDL K A V +D
Sbjct: 526 KNVFNDFIAAGEYLQKNGYTSKEYMALSGRSNGGLLVGATMTMRPDLAKVAFPGVGVLD- 584
Query: 523 LTTMLDPTIPLTTAEWE-EWGDPW-KEEFYFYMKSYSPVDNVKAQN-YPHILVTAGLNDP 579
ML A W ++G +E + Y+KSYSPV NVKA YP +V +D
Sbjct: 585 ---MLRYNKFTAGAGWAYDYGTAEDSKEMFEYLKSYSPVHNVKAGTCYPSTMVITSDHDD 641
Query: 580 RVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639
RV+ + KF ++L+ ++ N +L + E AGH + + + E A +F + + +
Sbjct: 642 RVVPAHSFKFGSELQAKQSCKNPILIRIETNAGHGAGRSTEQVVAENADLLSFALYEMGI 701
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Flavobacterium meningosepticum (taxid: 238) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q06903|PPCE_AERHY Prolyl endopeptidase OS=Aeromonas hydrophila PE=1 SV=2 | Back alignment and function description |
|---|
Score = 225 bits (574), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 184/645 (28%), Positives = 294/645 (45%), Gaps = 72/645 (11%)
Query: 16 APFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKA 75
APFR+G Y+Y+ + + C +L P + LD N+ +
Sbjct: 80 APFREGRYHYFFKNDGLQNQNVLCGQLA------------------GKPAEVFLDPNLLS 121
Query: 76 EGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTAS-VEWA 134
G ++ S D K +AY+ G + ++++D+E+ P+ PL V S + W
Sbjct: 122 P-DGTTALDQLSFSRDGKTLAYSLSLAGSDWREIHLMDVESKQPLETPLRDVKFSGISWL 180
Query: 135 GNEALVYITMDEILRPD-----------KAWLHKLEADQSNDICLYHE--KDDIYSLGLQ 181
GNE Y + D +PD K + H+L Q D ++ +G
Sbjct: 181 GNEGFFYSSYD---KPDGSELSARTDQHKLYFHRLGTAQEEDRLVFGAIPAQRHRYVGAT 237
Query: 182 ASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAAS-----HRGNHFFIT 236
+E ++L I++ + Y+ E +LT V D AA ++G+ ++
Sbjct: 238 VTEDDRYLLISAADSTSGNRLYVKDLTREGAPLLT---VQGDLAADVSLVDNKGSRLYLL 294
Query: 237 RRSDELFNSELLACPVDNTS--ETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITT 294
D N L+ DN + LIP R+ V L V+ GG
Sbjct: 295 TNRDAP-NRRLVTVEADNPGPEQWRDLIPERQQV-----------LTVHS--GGGYLFAE 340
Query: 295 YRLPAVGEPLKSLQGGKSVEFID--PVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDM 352
Y + A + GK V + + S+ L F + + PP++Y ++
Sbjct: 341 YMVDATARVEQFDHDGKRVREVGLPGLGSVSGFNGKQDDPALYFGFENYAQPPTLYKFEP 400
Query: 353 DMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYG 412
+ G L + F +Y +E+++ + DGT++P+ I YRK L KLDGS+P +LYG
Sbjct: 401 NSGAISLYRASAAP--FKPEDYVSEQRFYRSKDGTRVPLIISYRKGL-KLDGSNPTILYG 457
Query: 413 YGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC 472
YG +++ P+F+ S + LD G ++A+A +RGGGE G+ W+ G + K+N F DFIA
Sbjct: 458 YGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTRMNKQNVFDDFIAA 517
Query: 473 AEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 532
AEYL Y ++L I G S GGLL+GAV+ RPDL + A AV +D ML
Sbjct: 518 AEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVACQAVGVLD----MLRYHTF 573
Query: 533 LTTAEWE-EWGDPWKEEFYF-YMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMYSEPAKF 589
A W ++G E F Y+K YSP+ +V+A +YP LVT +D RV+ + KF
Sbjct: 574 TAGAGWAYDYGTSADSEAMFDYLKGYSPLHSVRAGVSYPSTLVTTADHDDRVVPAHSFKF 633
Query: 590 VAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634
A L+ + L + E AGH + + + + ++A Y F +
Sbjct: 634 AATLQADDAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTL 678
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Aeromonas hydrophila (taxid: 644) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P27195|PPCF_ELIMR Prolyl endopeptidase OS=Elizabethkingia miricola PE=1 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (556), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 185/662 (27%), Positives = 312/662 (47%), Gaps = 67/662 (10%)
Query: 5 LKGRIKQ--------EDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTM 56
+G+IK+ E +SAPF++G Y Y+ + +G + + +++ +A
Sbjct: 80 FRGQIKKQLLDIWNYEKISAPFKKGKYTYFYKN-DGLQ----AQSVLYRKDA-------- 126
Query: 57 ETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET 116
+ + LD N K +G S+ + LVAY+ G + + ++D ET
Sbjct: 127 -----SGKTEVFLDPN-KFSDKGTTSLANLSFNKKGTLVAYSISEGGSDWNKIIILDAET 180
Query: 117 GTPVGKPLVGVTAS-VEWAGNEALVYITMDE---------ILRPDKAWLHKLEADQSND- 165
+ + L+ V S + W G+E Y + D+ + K + HKL QS D
Sbjct: 181 KKQIDETLLDVKFSGISWLGDEGFFYSSYDKPKDGSVLSGMTDKHKVYFHKLGTKQSQDE 240
Query: 166 ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT---PRVVGV 222
+ + +K L +E +++L +++ + Y+ ++L+ T P + G
Sbjct: 241 LIIGGDKFPRRYLSGYVTEDQRYLVVSAANATNGNELYI-----KDLKNKTDFIPIITGF 295
Query: 223 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAV 282
++ N + D LF P +TT+ P E+ K I + + V
Sbjct: 296 ES------NVGLVDTDGDTLFLHTDKNAPNMRMVKTTIQNPKPETWK-DVIAETSEPMRV 348
Query: 283 YEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID--PVYSIDPSESVFSSRILRFHYSS 340
GG TY A+ + + + GK V I + + + L + +++
Sbjct: 349 --NSGGGYFFATYMKDALSQIKQYDKTGKLVREIKLPGSGTAGGFGGEKTEKELYYSFTN 406
Query: 341 LRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLV 400
TPP+++ + +D G S + + V F+ NY +E+ + +++DGT+IP+ I +K L
Sbjct: 407 YITPPTIFKFSIDSGKSEVYQKPKV--KFNPENYVSEQVFYTSADGTKIPMMISNKKGLK 464
Query: 401 KLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 460
K DG +P +LY YG + I PAF+ ++ G I+A+ IRGGGE G++W++ G
Sbjct: 465 K-DGKNPTILYSYGGFNISLQPAFSVVNAIWMENGGIYAVPNIRGGGEYGKKWHDAGTKQ 523
Query: 461 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520
+KKN F DFIA EYL KN Y +K+ + + GRS GGLL+GA + MRPDL K A V +
Sbjct: 524 QKKNVFNDFIAAGEYLQKNGYTSKDYMALSGRSNGGLLVGATMTMRPDLAKVAFPGVGVL 583
Query: 521 DVLTTMLDPTIPLTTAEWE-EWGDPW-KEEFYFYMKSYSPVDNVKAQN-YPHILVTAGLN 577
D ML A W ++G +E + Y+KSYSPV NVKA YP +V +
Sbjct: 584 D----MLRYNKFTAGAGWAYDYGTAEDSKEMFEYLKSYSPVHNVKAGTCYPSTMVITSDH 639
Query: 578 DPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637
D RV+ + KF A+L+ + N +L + E AGH + + + E A +F + +
Sbjct: 640 DDRVVPAHSFKFGAELQAKQACKNPVLIRIETNAGHGAGRSTEQVVMENADLLSFALYEM 699
Query: 638 SM 639
+
Sbjct: 700 GI 701
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Elizabethkingia miricola (taxid: 172045) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q32N48|PPCEL_XENLA Prolyl endopeptidase-like OS=Xenopus laevis GN=prepl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 157/548 (28%), Positives = 258/548 (47%), Gaps = 25/548 (4%)
Query: 58 TGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG 117
TG D+ E L++ E++ G G Y + +VSP K +A E T V+ ++ G
Sbjct: 117 TGEDSL-EVLLISEDL---GLGDYEIQKIRVSPKQKFMAVTLKGYEREESTCVVVKLDNG 172
Query: 118 TPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYS 177
V + V S EWA + L++ + + + + + +Y E D +
Sbjct: 173 PQVTHCIENVF-SCEWATDRMLLHTSQVNV-QCRQVFATDFSDANGAAQLVYTENDPRFF 230
Query: 178 LGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-PRVVGVDTAASHRGNHFFIT 236
+ L + K+F+ I S SK T V +D P E VL R+ GV H ++
Sbjct: 231 VDLYCTRDKRFITINSNSKSTSEVRLIDNRCPFEPPVLVQKRIAGVIYYIEHSNGCLYML 290
Query: 237 RRSDELFNSELLACPVDN-TSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTY 295
RR E ++L V + + +E KL D+++ DH ++ L+
Sbjct: 291 RRHGEAAEYKILKAAVSSGMKHWEPVYEVQERTKLVDMEMLKDHCLLF-----LKNHNQL 345
Query: 296 RLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMG 355
L +G P ++ + +D ++ + + + F SS PP ++Y
Sbjct: 346 SLEVIGLPSGAVLQSIKLPAWACALELD-HQAEYGAGTVGFSLSSPVHPPVHFEY----- 399
Query: 356 ISVLKK---IETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYG 412
S+ KK ++T + + T R A + DGT +P+ ++Y+ + ++ PLL++
Sbjct: 400 -SLRKKQLSVDTNHSSDGIHQFHTLRLEAKSKDGTSVPLTLLYKDSEKQMR-QRPLLIHV 457
Query: 413 YGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC 472
YG+Y + + +F + L++ G++ A +RGGGELG W+ G KK N D +C
Sbjct: 458 YGAYGMDLNMSFKVEKRMLVEEGWLLAYCHVRGGGELGCNWHSEGVLDKKLNGLEDLGSC 517
Query: 473 AEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 532
+L Y +E SAGG+L GA+ N P LF+A V PF+DVL TM++ ++P
Sbjct: 518 ISHLHGLGYSQPHYSAVEAASAGGVLAGALCNSAPRLFRAVVLEAPFLDVLNTMMNVSLP 577
Query: 533 LTTAEWEEWGDPWKEEFYF-YMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVA 591
LT E EEWG+P +E Y Y+KSY P N+ QNYP + +TA ND RV ++
Sbjct: 578 LTIEEQEEWGNPLSDEKYHRYIKSYCPYQNITPQNYPCVRITAYENDQRVPIQGLLGYIT 637
Query: 592 KLREMKTD 599
+LR+ D
Sbjct: 638 RLRKAARD 645
|
Probable serine peptidase whose precise substrate specificity remains unclear. Xenopus laevis (taxid: 8355) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q5ZKL5|PPCEL_CHICK Prolyl endopeptidase-like OS=Gallus gallus GN=PREPL PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 150/521 (28%), Positives = 249/521 (47%), Gaps = 24/521 (4%)
Query: 86 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMD 145
++SPD + +A + ++ E T ++ + P + ++ S EWA N+ L Y T
Sbjct: 179 IRISPDERYLATSLQSENSEEATCVIMKL-GDVPFVEEVIPNVFSFEWATNDVLYY-TSQ 236
Query: 146 EILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLD 205
+ L+ ++ ++ + +Y E+D + + + ++ ++FL I S SK T V+ +D
Sbjct: 237 KNLKCQNVFMTTFTNEKYTKL-VYTEQDARFFVDIYCTKDRRFLTINSNSKTTSEVWLID 295
Query: 206 VSKPEELRVLT-PRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNT--SETTVLI 262
P +L VL R GV HR N +I E +L+ V +T ++
Sbjct: 296 CRHPFKLPVLVQARTKGVIYHVEHRNNELYILTSYGEPAEYKLMKASVASTGMENWQLVY 355
Query: 263 PHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSI 322
E KL D+++F DH ++ ++ G + + V ++S+Q P ++
Sbjct: 356 ALEEKTKLIDLEMFRDHCIMFLQKAGYLYLNV--IAFVSHSVQSIQL--------PTWAC 405
Query: 323 D---PSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERK 379
S +S F +S PP + Y + + E V N T R
Sbjct: 406 AFELESHPEHASSTCYFQLTSPVHPPRRFAYSFKENNLIEQAAEEVPIIM---NCHTTRL 462
Query: 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 439
A + D T +PI + + N +L PLL++ YG+Y I + +F +L L++ G+I A
Sbjct: 463 LAKSKDETLVPITVFHNVNSKELH-RKPLLVHVYGAYGIDLNMSFKEEKLMLIEEGWILA 521
Query: 440 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 499
+RGGGELG +W+++G K D AC L + + + + SAGG+L
Sbjct: 522 YCHVRGGGELGLRWHKDGCQQNKLKGLHDLKACIMLLHELGFSQPKYTALTAVSAGGVLA 581
Query: 500 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYF-YMKSYSP 558
GA+ N P+L +A V PFVDVL TM+ +PL+ E EEWG+P +E Y+K+Y P
Sbjct: 582 GAICNSDPELIRAVVLQAPFVDVLNTMMKTHLPLSIEEQEEWGNPLADEKCMKYIKNYCP 641
Query: 559 VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599
N+K Q YP + +TA ND RV + ++V KLR+ D
Sbjct: 642 YHNIKPQCYPSVFITAYENDQRVPLTGILRYVQKLRKATLD 682
|
Probable serine peptidase whose precise substrate specificity remains unclear. Gallus gallus (taxid: 9031) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q8C167|PPCEL_MOUSE Prolyl endopeptidase-like OS=Mus musculus GN=Prepl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 153/523 (29%), Positives = 243/523 (46%), Gaps = 28/523 (5%)
Query: 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEA---L 139
+ C +V+PD K VA T+ E T+ V+ + + PV + +S EW +E +
Sbjct: 156 IDCIRVAPDEKYVAAKIRTEDSETSTLVVVKL-SDQPVMEASFPNVSSFEWVKDEEDEDV 214
Query: 140 VYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITR 199
++ T LR + ++ N+ Y EKD Y + L ++ +FL + +K T
Sbjct: 215 LFYTFQRNLRCHDVYRATFGDNKRNER-FYTEKDPSYFVFLYLTKDSRFLTLNIMNKTTS 273
Query: 200 FVFYLDVSKPEELRVL-TPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTS-- 256
V+ +D P + VL R+ G+ HR + +I E +L+ D +
Sbjct: 274 EVWLIDGLSPWDPPVLIQKRIHGMLYYVEHRDDELYILTNVGEPTEFKLMRTAADAPAIM 333
Query: 257 ETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGK-SVEF 315
+ + + K+ D+ +F DH ++ + L + L + ++SL+ + F
Sbjct: 334 NWDLFFTMKRNTKVVDLDMFKDHCVLFLKHSNLLYVNVIGL--ADDSVRSLKLPPWACGF 391
Query: 316 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFD--TNN 373
I S DP F S PP Y Y G K+ G D T
Sbjct: 392 IMDTNS-DPKNCPF-------QLCSPIRPPKYYTYKFAEG-----KLFEETGHEDPITKT 438
Query: 374 YFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD 433
R A + DG +P+ + ++ + L PLL++ YG+Y + F + L+D
Sbjct: 439 SRVLRIEAKSKDGKLVPMTVFHKTDSEDLQ-RKPLLVHVYGAYGMDLKMNFRPEKRVLVD 497
Query: 434 RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRS 493
G+I A +RGGGELG QW+ +G+ KK N D +AC + L + + S
Sbjct: 498 DGWILAYCHVRGGGELGLQWHADGRLTKKLNGLADLVACIKTLHSQGFSQPSLTTLSAFS 557
Query: 494 AGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFY-FY 552
AGG+L+GA+ N +P+L +A PF+DVL TMLD T+PLT E EEWG+P +E + Y
Sbjct: 558 AGGVLVGALCNSKPELLRAVTLEAPFLDVLNTMLDTTLPLTLEELEEWGNPSSDEKHKNY 617
Query: 553 MKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLRE 595
+K Y P N+K Q+YP + +TA ND RV + KL+E
Sbjct: 618 IKRYCPCQNIKPQHYPSVHITAYENDERVPLKGIVNYTEKLKE 660
|
Probable serine peptidase whose precise substrate specificity remains unclear. Does not cleave peptides after a arginine or lysine residue. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 648 | ||||||
| 359484112 | 719 | PREDICTED: protease 2-like isoform 2 [Vi | 1.0 | 0.901 | 0.771 | 0.0 | |
| 297742722 | 698 | unnamed protein product [Vitis vinifera] | 1.0 | 0.928 | 0.771 | 0.0 | |
| 297742723 | 755 | unnamed protein product [Vitis vinifera] | 0.993 | 0.852 | 0.778 | 0.0 | |
| 449458732 | 757 | PREDICTED: protease 2-like [Cucumis sati | 0.995 | 0.852 | 0.752 | 0.0 | |
| 224095196 | 711 | predicted protein [Populus trichocarpa] | 0.995 | 0.907 | 0.761 | 0.0 | |
| 356575387 | 766 | PREDICTED: protease 2-like [Glycine max] | 0.986 | 0.834 | 0.781 | 0.0 | |
| 297847380 | 710 | prolyl oligopeptidase family protein [Ar | 0.993 | 0.907 | 0.753 | 0.0 | |
| 18403046 | 710 | oligopeptidase B [Arabidopsis thaliana] | 0.993 | 0.907 | 0.750 | 0.0 | |
| 242097176 | 710 | hypothetical protein SORBIDRAFT_10g03118 | 0.993 | 0.907 | 0.739 | 0.0 | |
| 225463781 | 694 | PREDICTED: protease 2-like [Vitis vinife | 0.955 | 0.891 | 0.788 | 0.0 |
| >gi|359484112|ref|XP_003633066.1| PREDICTED: protease 2-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/649 (77%), Positives = 576/649 (88%), Gaps = 1/649 (0%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
++AE++GRIK++D+S P R+G YYYY RTLEGKEYVQ+CRRL+ N E PPSV++TM TGP
Sbjct: 71 IYAEIRGRIKEDDISVPLRKGPYYYYQRTLEGKEYVQYCRRLVPNVEVPPSVYETMPTGP 130
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
APPEH+ILDEN+KA+ +YS+G F++SP++KLVAYAEDTKGDEIYTVYVID ET PV
Sbjct: 131 SAPPEHVILDENIKAQEHAYYSIGAFKISPNSKLVAYAEDTKGDEIYTVYVIDAETRAPV 190
Query: 121 GKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 180
GKP+VGVT +EW G+EAL+YITMDE LRPDK WLHKLE DQS+D CLYHEKD+++S+ L
Sbjct: 191 GKPIVGVTPYLEWVGDEALLYITMDETLRPDKVWLHKLETDQSSDSCLYHEKDNMFSVDL 250
Query: 181 QASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRRS 239
+ASESKKF+F+ SESK TRF+F LDVSKPE L VLTPR+ G+DT+ASHRGNHFFI RRS
Sbjct: 251 EASESKKFVFVGSESKTTRFIFNLDVSKPEGGLMVLTPRLDGIDTSASHRGNHFFIKRRS 310
Query: 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299
DE FNSE+LACP++N SETTVL+PHRESVK+QDIQLF HL VYERE GL K+T YRLPA
Sbjct: 311 DEFFNSEVLACPLNNISETTVLLPHRESVKIQDIQLFSGHLVVYERENGLPKVTFYRLPA 370
Query: 300 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 359
VGEPL SLQGG++V+F+DP+YS+DPSES FSS ILRF YSSLRTP SVYDYDM+ G+SVL
Sbjct: 371 VGEPLGSLQGGRTVDFLDPIYSVDPSESQFSSSILRFSYSSLRTPDSVYDYDMNTGVSVL 430
Query: 360 KKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC 419
KKI+TVLG FD + Y TERKWA+A DGTQIPI IVYRK+LVKLDGSDPLLLYGYGSYEIC
Sbjct: 431 KKIQTVLGNFDASKYITERKWANAQDGTQIPISIVYRKDLVKLDGSDPLLLYGYGSYEIC 490
Query: 420 NDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479
+ F SRLSLLDRGFIFAIA IRGGGE+GRQWYENGK LKKKNTFTDFI CAEYLI+
Sbjct: 491 VEAHFQESRLSLLDRGFIFAIAHIRGGGEMGRQWYENGKLLKKKNTFTDFIVCAEYLIEI 550
Query: 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 539
YC+KEKLCIEGRSAGGLLIGAVLNMRPDLF+AA+A VPFVDVLTTMLDPTIPLTT+EWE
Sbjct: 551 KYCSKEKLCIEGRSAGGLLIGAVLNMRPDLFRAAIAGVPFVDVLTTMLDPTIPLTTSEWE 610
Query: 540 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599
EWGDP KEEFYFYMKSYSPVDN+KAQNYP+ILVTAGLNDPRV+YSEPAK VAKLR+ KTD
Sbjct: 611 EWGDPRKEEFYFYMKSYSPVDNIKAQNYPNILVTAGLNDPRVLYSEPAKLVAKLRDTKTD 670
Query: 600 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVGSEQS 648
DNILLFKCE+ AGH SKSGRFE+L+E AFTYTF++++L M P +GS Q+
Sbjct: 671 DNILLFKCEMAAGHSSKSGRFEKLQEYAFTYTFIIKSLDMAPPLGSGQN 719
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742722|emb|CBI35356.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1070 bits (2767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/649 (77%), Positives = 576/649 (88%), Gaps = 1/649 (0%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
++AE++GRIK++D+S P R+G YYYY RTLEGKEYVQ+CRRL+ N E PPSV++TM TGP
Sbjct: 50 IYAEIRGRIKEDDISVPLRKGPYYYYQRTLEGKEYVQYCRRLVPNVEVPPSVYETMPTGP 109
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
APPEH+ILDEN+KA+ +YS+G F++SP++KLVAYAEDTKGDEIYTVYVID ET PV
Sbjct: 110 SAPPEHVILDENIKAQEHAYYSIGAFKISPNSKLVAYAEDTKGDEIYTVYVIDAETRAPV 169
Query: 121 GKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 180
GKP+VGVT +EW G+EAL+YITMDE LRPDK WLHKLE DQS+D CLYHEKD+++S+ L
Sbjct: 170 GKPIVGVTPYLEWVGDEALLYITMDETLRPDKVWLHKLETDQSSDSCLYHEKDNMFSVDL 229
Query: 181 QASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRRS 239
+ASESKKF+F+ SESK TRF+F LDVSKPE L VLTPR+ G+DT+ASHRGNHFFI RRS
Sbjct: 230 EASESKKFVFVGSESKTTRFIFNLDVSKPEGGLMVLTPRLDGIDTSASHRGNHFFIKRRS 289
Query: 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299
DE FNSE+LACP++N SETTVL+PHRESVK+QDIQLF HL VYERE GL K+T YRLPA
Sbjct: 290 DEFFNSEVLACPLNNISETTVLLPHRESVKIQDIQLFSGHLVVYERENGLPKVTFYRLPA 349
Query: 300 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 359
VGEPL SLQGG++V+F+DP+YS+DPSES FSS ILRF YSSLRTP SVYDYDM+ G+SVL
Sbjct: 350 VGEPLGSLQGGRTVDFLDPIYSVDPSESQFSSSILRFSYSSLRTPDSVYDYDMNTGVSVL 409
Query: 360 KKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC 419
KKI+TVLG FD + Y TERKWA+A DGTQIPI IVYRK+LVKLDGSDPLLLYGYGSYEIC
Sbjct: 410 KKIQTVLGNFDASKYITERKWANAQDGTQIPISIVYRKDLVKLDGSDPLLLYGYGSYEIC 469
Query: 420 NDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479
+ F SRLSLLDRGFIFAIA IRGGGE+GRQWYENGK LKKKNTFTDFI CAEYLI+
Sbjct: 470 VEAHFQESRLSLLDRGFIFAIAHIRGGGEMGRQWYENGKLLKKKNTFTDFIVCAEYLIEI 529
Query: 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 539
YC+KEKLCIEGRSAGGLLIGAVLNMRPDLF+AA+A VPFVDVLTTMLDPTIPLTT+EWE
Sbjct: 530 KYCSKEKLCIEGRSAGGLLIGAVLNMRPDLFRAAIAGVPFVDVLTTMLDPTIPLTTSEWE 589
Query: 540 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599
EWGDP KEEFYFYMKSYSPVDN+KAQNYP+ILVTAGLNDPRV+YSEPAK VAKLR+ KTD
Sbjct: 590 EWGDPRKEEFYFYMKSYSPVDNIKAQNYPNILVTAGLNDPRVLYSEPAKLVAKLRDTKTD 649
Query: 600 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVGSEQS 648
DNILLFKCE+ AGH SKSGRFE+L+E AFTYTF++++L M P +GS Q+
Sbjct: 650 DNILLFKCEMAAGHSSKSGRFEKLQEYAFTYTFIIKSLDMAPPLGSGQN 698
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742723|emb|CBI35357.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1070 bits (2766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/645 (77%), Positives = 575/645 (89%), Gaps = 1/645 (0%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
++A+ +GRIK++D+SAP R+G+YYYY RTL GKEYVQHCRRL+ EA PSV+DTM TGP
Sbjct: 75 IYADTRGRIKEDDISAPVRRGAYYYYKRTLAGKEYVQHCRRLVSPVEALPSVYDTMPTGP 134
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
DAP EH+ILDEN KA+ +YS+G F+VSP+NKLVAYAEDTKGDEIYTVY+ID ET TPV
Sbjct: 135 DAPQEHVILDENTKAQEHTYYSIGAFKVSPNNKLVAYAEDTKGDEIYTVYIIDAETRTPV 194
Query: 121 GKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 180
GKPLV +T+ +EWAGNEAL+YITMDE+LRPDK WLHKL DQS+D CLYHEKDD++SLGL
Sbjct: 195 GKPLVRITSDLEWAGNEALLYITMDEVLRPDKVWLHKLGTDQSSDSCLYHEKDDMFSLGL 254
Query: 181 QASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRRS 239
QASESK+FLF+ S SK T F+FYLDVSKPE L VLTPR+ G+DT+ASHRGNHF+I RRS
Sbjct: 255 QASESKQFLFVESGSKNTGFIFYLDVSKPEGGLTVLTPRLDGIDTSASHRGNHFYIKRRS 314
Query: 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299
+E FNSE+LACP+DN S TVLIPHRESVK+Q IQLF DHL V+ERE GL K+T YRLPA
Sbjct: 315 NEYFNSEVLACPLDNVSTMTVLIPHRESVKIQKIQLFSDHLVVHERENGLPKVTVYRLPA 374
Query: 300 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 359
VGEPL SLQGG++++F+DPVY++DPSES FSS ILRF YSSLRTP SVYDYDM GISVL
Sbjct: 375 VGEPLTSLQGGQTIDFLDPVYTVDPSESQFSSSILRFSYSSLRTPRSVYDYDMRTGISVL 434
Query: 360 KKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC 419
K IETVLG FD + Y TERKWA+ASDGTQIP+ IVYRK+LVKLDGSDPLLLYGYGSYEIC
Sbjct: 435 KNIETVLGDFDASKYITERKWANASDGTQIPLSIVYRKDLVKLDGSDPLLLYGYGSYEIC 494
Query: 420 NDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479
DP+F +SRLSLLDRGFIFAIA IRGGGE+GRQWYENGK LKK+NTFTDFIACAEYLI+
Sbjct: 495 IDPSFKASRLSLLDRGFIFAIAHIRGGGEMGRQWYENGKLLKKRNTFTDFIACAEYLIEM 554
Query: 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 539
+C+KEKLCI+G SAGGLLIGAVLNMRPDLFKAAV VPFVDV+TTMLDP+IPLTT+EWE
Sbjct: 555 KFCSKEKLCIQGGSAGGLLIGAVLNMRPDLFKAAVTRVPFVDVVTTMLDPSIPLTTSEWE 614
Query: 540 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599
EWGDP KEEFYFYMKSYSPVDN+KAQNYP ILVTAGLNDPRVMYSEPAKFVAKLR+MK D
Sbjct: 615 EWGDPRKEEFYFYMKSYSPVDNIKAQNYPKILVTAGLNDPRVMYSEPAKFVAKLRDMKMD 674
Query: 600 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVG 644
DN+LLFKCELGAGHFSKSGRFE+L+E AF TF+++AL+M+P++G
Sbjct: 675 DNVLLFKCELGAGHFSKSGRFEKLKEEAFVDTFILKALNMVPTLG 719
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458732|ref|XP_004147101.1| PREDICTED: protease 2-like [Cucumis sativus] gi|449517064|ref|XP_004165566.1| PREDICTED: protease 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1053 bits (2722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/647 (75%), Positives = 577/647 (89%), Gaps = 2/647 (0%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLI-HNNEAPPSVHDTMETG 59
+F+E++GRIK++D++ P R+GSYYYY RTLEGKEYVQ+CRR + E SVHDTM TG
Sbjct: 111 IFSEIRGRIKEDDITVPERKGSYYYYERTLEGKEYVQYCRRFVPRGEEEAISVHDTMPTG 170
Query: 60 PDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP 119
P+APPEH+ILDENVKAE + +YS+GCF+VSP+NKLVAYAEDTKGDEIYTVY+ID ETG P
Sbjct: 171 PNAPPEHVILDENVKAENQSYYSIGCFEVSPNNKLVAYAEDTKGDEIYTVYIIDAETGAP 230
Query: 120 VGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLG 179
VGKPLVGVT+ ++WAG++ALVYITMDEILRPDKAWLHKL +QS D CLYHEKDD++SL
Sbjct: 231 VGKPLVGVTSYLKWAGDDALVYITMDEILRPDKAWLHKLGTEQSMDTCLYHEKDDMFSLD 290
Query: 180 LQASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRR 238
L+ASESKK+LFIASESK TRF FYLDVS+PE+ L VLTPRV G+DT SHRGNHFFI RR
Sbjct: 291 LEASESKKYLFIASESKFTRFNFYLDVSRPEDGLVVLTPRVDGIDTYPSHRGNHFFILRR 350
Query: 239 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298
S+E+FNSE++ACP+DNTS TTV++PHRESVK+Q+I+LF++H+ + ERE GL K+ Y LP
Sbjct: 351 SEEIFNSEVVACPLDNTSATTVILPHRESVKIQEIELFLNHIVILEREDGLPKVVVYSLP 410
Query: 299 AVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV 358
+GEPLK+L+GG++V+F D YS+D ES FSS ILRF YSS++TPPS YDYDM G+SV
Sbjct: 411 DIGEPLKTLEGGRAVDFADATYSVDALESEFSSSILRFCYSSMKTPPSTYDYDMKTGVSV 470
Query: 359 LKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI 418
LKK+ETVLGGFD+N Y TERKWA+A DGT++P+ IVYRK+LVKLDGSDPLLLYGYGSYE
Sbjct: 471 LKKVETVLGGFDSNKYVTERKWATALDGTKVPLSIVYRKDLVKLDGSDPLLLYGYGSYEY 530
Query: 419 CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK 478
C DP+F +SR+SLLDRGFI+ IA IRGGGE+GRQWYENGK LKKKNTFTDFI+ AEYLI+
Sbjct: 531 CIDPSFKASRISLLDRGFIYVIAHIRGGGEMGRQWYENGKLLKKKNTFTDFISSAEYLIE 590
Query: 479 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW 538
N YC+KEKLCI GRSAGGLLIGAV+NMRPDLFKAA+A VPFVDVLTTMLDPTIPLTT+EW
Sbjct: 591 NKYCSKEKLCINGRSAGGLLIGAVINMRPDLFKAAIAGVPFVDVLTTMLDPTIPLTTSEW 650
Query: 539 EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKT 598
EEWGDP KEEFYFYMKSYSPVDNVKAQNYP +L+TAGLNDPRV+YSEPAKFVAKLR KT
Sbjct: 651 EEWGDPRKEEFYFYMKSYSPVDNVKAQNYPDVLITAGLNDPRVLYSEPAKFVAKLRATKT 710
Query: 599 DDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVGS 645
D+N+LLFKCELGAGHFSKSGRFE+L+E AFTY F++++L+M+P+VG+
Sbjct: 711 DNNLLLFKCELGAGHFSKSGRFEKLQEDAFTYAFILKSLNMIPAVGN 757
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224095196|ref|XP_002310359.1| predicted protein [Populus trichocarpa] gi|222853262|gb|EEE90809.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1053 bits (2722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/647 (76%), Positives = 564/647 (87%), Gaps = 2/647 (0%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHN-NEAPPSVHDTMETG 59
+F E++GRIK++D+SAP+R+G YYYYTR LEGKEYVQHCRRLI N N P SVHDTM TG
Sbjct: 63 LFKEIRGRIKEDDISAPYRKGPYYYYTRNLEGKEYVQHCRRLIPNYNTTPCSVHDTMPTG 122
Query: 60 PDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP 119
PD PPEH+ILDENVKA+ FYS+ F+VSP++KLVA AEDTKGDEIY+V+VID ETG P
Sbjct: 123 PDDPPEHVILDENVKAQEHRFYSIQAFKVSPNHKLVACAEDTKGDEIYSVHVIDAETGAP 182
Query: 120 VGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLG 179
VGKPL VT+ VEWA ++ LVYITMDEILRPDK WLHKL DQS+DICLYHEKDD +S+G
Sbjct: 183 VGKPLTSVTSHVEWANDDTLVYITMDEILRPDKVWLHKLGTDQSSDICLYHEKDDTFSIG 242
Query: 180 LQASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRR 238
LQ SES+KFLF+ SESKIT F+F++D SKPE+ L+VLTPRVVG+D ASHRGNHFFI RR
Sbjct: 243 LQKSESQKFLFVGSESKITSFIFFIDASKPEDGLKVLTPRVVGIDNRASHRGNHFFIIRR 302
Query: 239 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298
S+E FNSEL+ACPVD+ S TTVLIPHRE +K+QD LF +HLAVYERE GL K+T YRLP
Sbjct: 303 SEEFFNSELVACPVDDVSVTTVLIPHRERIKIQDTHLFANHLAVYERENGLPKVTVYRLP 362
Query: 299 AVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV 358
AV EPL SL+ G++++FIDPVY++DP+ S F+S +LRF YSSLRTP SVYDYDM+ G SV
Sbjct: 363 AVDEPLTSLEDGRAIDFIDPVYTVDPAGSEFNSSVLRFSYSSLRTPNSVYDYDMNTGTSV 422
Query: 359 LKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI 418
+KKI TVLGGFD + YFTERKWA+ASDGTQ+P+ IVYRKNLV LDGSDPLLLYGYGSYE+
Sbjct: 423 VKKIVTVLGGFDASEYFTERKWATASDGTQVPMSIVYRKNLVNLDGSDPLLLYGYGSYEV 482
Query: 419 CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK 478
C DP F +SRLS+LDRGFIFAIA IRGGGE+GRQWYENGK LKKKNTFTDFIACAEYLI+
Sbjct: 483 CIDPWFKASRLSILDRGFIFAIAHIRGGGEMGRQWYENGKCLKKKNTFTDFIACAEYLIE 542
Query: 479 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW 538
YC+KEKLCIEGRSAGGLL+G+VLNMRPDLFK A A VPFVD LTTMLDPTIPLTT+EW
Sbjct: 543 QRYCSKEKLCIEGRSAGGLLMGSVLNMRPDLFKVAFAGVPFVDALTTMLDPTIPLTTSEW 602
Query: 539 EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKT 598
EEWGDP KEEFY YMKSYSPVDNVKAQNYPHILVTAGL+DPRVMYSEPAKFVAKLRE KT
Sbjct: 603 EEWGDPRKEEFYHYMKSYSPVDNVKAQNYPHILVTAGLHDPRVMYSEPAKFVAKLRETKT 662
Query: 599 DDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVGS 645
D+NILL KCE GAGH SKSGRFE+L+E AF Y F+++AL M+P + S
Sbjct: 663 DNNILLLKCEFGAGHSSKSGRFEKLQEQAFIYAFILKALDMIPELSS 709
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575387|ref|XP_003555823.1| PREDICTED: protease 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1047 bits (2707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/640 (78%), Positives = 566/640 (88%), Gaps = 1/640 (0%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
+FAE++GRIK+EDVSAP R+G YYYY RTLEGKEYVQ+CRRLI +N+ PSVHD M TGP
Sbjct: 123 LFAEIRGRIKEEDVSAPLRKGPYYYYKRTLEGKEYVQYCRRLISDNQKVPSVHDIMPTGP 182
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
+APPEH+ILD NVKA+ +YS+G F+VSP+NKLVAYAEDTKGDEIYT+YVID+ET +
Sbjct: 183 EAPPEHVILDVNVKAQHHLYYSIGAFKVSPNNKLVAYAEDTKGDEIYTIYVIDVETQATI 242
Query: 121 GKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 180
G+PLVGVT+ +EWAG+ A VYITMDEILRPDKAW H L +QS D CLY EKDD++SL L
Sbjct: 243 GEPLVGVTSYLEWAGDNAFVYITMDEILRPDKAWFHVLGTEQSKDTCLYVEKDDMFSLDL 302
Query: 181 QASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRRS 239
QASESKK+LF+ASESK TRF FYLDVSKPEE L+VLTPRV G+DT SHRG+HFFI RRS
Sbjct: 303 QASESKKYLFVASESKNTRFNFYLDVSKPEEGLKVLTPRVDGIDTTVSHRGDHFFIKRRS 362
Query: 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299
D+ FNSE++AC V+NTS TTVLIPHRESVK+Q+IQLF DHL YERE GL KI Y LP
Sbjct: 363 DQFFNSEVVACAVNNTSSTTVLIPHRESVKIQEIQLFSDHLVAYERENGLPKIIVYHLPP 422
Query: 300 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 359
+GEPL+SL+ G++V F+DPVYS + S+S FSS ILRF YSSLRTP SVYDYDM GISVL
Sbjct: 423 IGEPLRSLESGQAVSFVDPVYSAESSDSEFSSSILRFSYSSLRTPSSVYDYDMKAGISVL 482
Query: 360 KKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC 419
KKI++VLGGFD Y TER+WA +SDGT IPI IVYRK+LVKLDGSDPLLLYGYGSYEIC
Sbjct: 483 KKIDSVLGGFDATRYVTERQWAPSSDGTLIPISIVYRKDLVKLDGSDPLLLYGYGSYEIC 542
Query: 420 NDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479
DP+F S+RLSLLDRGFI+AIA IRGGGE+GRQWYENGK LKKKNTFTDFIACAEYLI+
Sbjct: 543 IDPSFKSARLSLLDRGFIYAIAHIRGGGEMGRQWYENGKLLKKKNTFTDFIACAEYLIEK 602
Query: 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 539
+C+KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA VPFVDV+TTMLDPTIPLTT+EWE
Sbjct: 603 KFCSKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAGVPFVDVVTTMLDPTIPLTTSEWE 662
Query: 540 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599
EWGDP KEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRV+YSEPAKFVAKLR+MKTD
Sbjct: 663 EWGDPRKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVLYSEPAKFVAKLRDMKTD 722
Query: 600 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639
DNILLFKCELGAGHFSKSGRFE+L+E AFTY ++M+ L+M
Sbjct: 723 DNILLFKCELGAGHFSKSGRFEKLQEDAFTYAYIMKTLNM 762
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297847380|ref|XP_002891571.1| prolyl oligopeptidase family protein [Arabidopsis lyrata subsp. lyrata] gi|297337413|gb|EFH67830.1| prolyl oligopeptidase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1047 bits (2707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/645 (75%), Positives = 569/645 (88%), Gaps = 1/645 (0%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
+FAE++GRIK++D+SAP R+G YYYY + L+GKEYVQHCRRLI +N+A PSV+DTM TGP
Sbjct: 66 LFAEIRGRIKEDDISAPLRKGPYYYYEKNLQGKEYVQHCRRLIPDNKAEPSVYDTMLTGP 125
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
DAPPEH++LDEN+KA+ +Y +G F+ SPD+KLVAYAEDTKGDEIYTV VID E PV
Sbjct: 126 DAPPEHVLLDENIKAQEHDYYRIGAFKASPDHKLVAYAEDTKGDEIYTVNVIDSEALKPV 185
Query: 121 GKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 180
G+ L G+T+ +EWAGN+ALVYITMDEILRPDK WLHKL +Q +D+CLYHEKDD++SL L
Sbjct: 186 GEQLKGLTSYLEWAGNDALVYITMDEILRPDKVWLHKLGTEQGSDVCLYHEKDDMFSLEL 245
Query: 181 QASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRRS 239
ASES K+LF+ASESK TRFVF LDVSKP++ LRVLTPRV G+D++ SHRGNHFFI RRS
Sbjct: 246 HASESHKYLFVASESKTTRFVFSLDVSKPQDGLRVLTPRVDGIDSSVSHRGNHFFIQRRS 305
Query: 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299
E +NSEL+ACPV++TS+TTVL+PHRESVK+Q+IQLF DHLAV+ERE GLQKIT +RLPA
Sbjct: 306 TEFYNSELVACPVNDTSKTTVLLPHRESVKIQEIQLFRDHLAVFEREQGLQKITVHRLPA 365
Query: 300 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 359
G+PL+ LQGG+SV F+DPVYS+D +ES F SR+LRF YSS++TPPSVYDYDMD G SV+
Sbjct: 366 EGQPLERLQGGRSVIFVDPVYSVDSTESEFPSRVLRFKYSSMKTPPSVYDYDMDSGTSVV 425
Query: 360 KKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC 419
KKI+TVLGGFD +NY TERKW +ASDGTQIP+ IVY KNL KLDGSDPLLLYGYGSYEI
Sbjct: 426 KKIDTVLGGFDVSNYVTERKWVTASDGTQIPMSIVYNKNLAKLDGSDPLLLYGYGSYEIS 485
Query: 420 NDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479
DP F +SRLSLLDRGFIF IA +RGGGE+GRQWYENGK LKKKNTFTDFIACAE LI+
Sbjct: 486 VDPYFKTSRLSLLDRGFIFVIAHVRGGGEMGRQWYENGKLLKKKNTFTDFIACAERLIEL 545
Query: 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 539
YC+KE+LC+EGRSAGGLL+GAV+NMRPDLFK VA VPFVDVLTTMLDPTIPLTT+EWE
Sbjct: 546 KYCSKERLCMEGRSAGGLLMGAVVNMRPDLFKVVVAGVPFVDVLTTMLDPTIPLTTSEWE 605
Query: 540 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599
EWGDP KEEFYFYMKSYSPVDNV AQNYP++LVTAGLNDPRVMYSEP K+VAKLREMKTD
Sbjct: 606 EWGDPRKEEFYFYMKSYSPVDNVTAQNYPNMLVTAGLNDPRVMYSEPGKWVAKLREMKTD 665
Query: 600 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVG 644
+N+LLFKCELGAGHFSKSGRFE+L+E AF + F+M+ L M+P+ G
Sbjct: 666 NNVLLFKCELGAGHFSKSGRFEKLQEDAFMFAFMMKVLDMIPASG 710
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18403046|ref|NP_564567.1| oligopeptidase B [Arabidopsis thaliana] gi|5734786|gb|AAD50051.1|AC007980_16 Similar to oligopeptidases [Arabidopsis thaliana] gi|19310465|gb|AAL84967.1| At1g50380/F14I3_27 [Arabidopsis thaliana] gi|332194421|gb|AEE32542.1| oligopeptidase B [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1046 bits (2706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/645 (75%), Positives = 567/645 (87%), Gaps = 1/645 (0%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
+FAE++GRIK++D+SAP R+G YYYY + L+GKEY+QHCRRLI +N+A PSV+DTM TGP
Sbjct: 66 LFAEIRGRIKEDDISAPLRKGPYYYYEKNLQGKEYIQHCRRLITDNKAEPSVYDTMPTGP 125
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
DAPPEH+ILDEN KA+ +Y +G F+ SPD+KLVAYAEDTKGDEIYTV VID E PV
Sbjct: 126 DAPPEHVILDENTKAQEHDYYRIGAFKASPDHKLVAYAEDTKGDEIYTVNVIDSEALKPV 185
Query: 121 GKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 180
G+ L G+T+ +EWAGN+AL+YITMDEILRPDK WLHKL +QS+D+CLYHEKDD++SL L
Sbjct: 186 GQQLKGLTSYLEWAGNDALLYITMDEILRPDKVWLHKLGTEQSSDVCLYHEKDDMFSLEL 245
Query: 181 QASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRRS 239
ASES K+LF+ASESK TRFVF LDVSK ++ LRVLTPRV G+D++ SHRGNHFFI RRS
Sbjct: 246 HASESHKYLFVASESKTTRFVFSLDVSKTQDGLRVLTPRVDGIDSSVSHRGNHFFIQRRS 305
Query: 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299
E +NSEL+ACPVD+TS+TTVL+PHRESVK+Q+IQLF DHLAV+ERE GLQKIT +RLPA
Sbjct: 306 TEFYNSELIACPVDDTSKTTVLLPHRESVKIQEIQLFRDHLAVFERENGLQKITVHRLPA 365
Query: 300 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 359
G+PL+ LQGG++V F+DPVYS+D +ES FSSR+LRF Y S++TPPSVYDYDMD G SV+
Sbjct: 366 EGQPLEGLQGGRNVSFVDPVYSVDSTESEFSSRVLRFKYCSMKTPPSVYDYDMDSGTSVV 425
Query: 360 KKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC 419
KKI+TVLGGFD +NY TERKW +ASDGTQIP+ IVY K L KLDGSDPLLLYGYGSYEI
Sbjct: 426 KKIDTVLGGFDASNYVTERKWVAASDGTQIPMSIVYNKKLAKLDGSDPLLLYGYGSYEIS 485
Query: 420 NDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479
DP F +SRLSLLDRGF F IA +RGGGE+GRQWYENGK LKKKNTFTDFIACAE LI+
Sbjct: 486 VDPYFKASRLSLLDRGFTFVIAHVRGGGEMGRQWYENGKLLKKKNTFTDFIACAERLIEL 545
Query: 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 539
YC+KEKLC+EGRSAGGLL+GAV+NMRPDLFK +A VPFVDVLTTMLDPTIPLTT+EWE
Sbjct: 546 KYCSKEKLCMEGRSAGGLLMGAVVNMRPDLFKVVIAGVPFVDVLTTMLDPTIPLTTSEWE 605
Query: 540 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599
EWGDP KEEFYFYMKSYSPVDNV AQNYP++LVTAGLNDPRVMYSEP K+VAKLREMKTD
Sbjct: 606 EWGDPRKEEFYFYMKSYSPVDNVTAQNYPNMLVTAGLNDPRVMYSEPGKWVAKLREMKTD 665
Query: 600 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVG 644
+N+LLFKCELGAGHFSKSGRFE+L+E AFT+ F+M+ L M+P+ G
Sbjct: 666 NNVLLFKCELGAGHFSKSGRFEKLQEDAFTFAFMMKVLDMIPASG 710
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242097176|ref|XP_002439078.1| hypothetical protein SORBIDRAFT_10g031180 [Sorghum bicolor] gi|241917301|gb|EER90445.1| hypothetical protein SORBIDRAFT_10g031180 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1043 bits (2698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/646 (73%), Positives = 565/646 (87%), Gaps = 2/646 (0%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
++AE++GRIK++D+ AP R+G YYYY RTL GKEYVQHCRRL+ +AP VHD M TGP
Sbjct: 65 IYAEIRGRIKEDDIDAPLRKGQYYYYERTLTGKEYVQHCRRLV-PTDAPVRVHDVMPTGP 123
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
DAP EH+I+DENV+AEG +YS+G F+ SP+NKLV YAEDTKGDEIYTVYVID E+G V
Sbjct: 124 DAPDEHIIMDENVRAEGHDYYSIGTFKASPNNKLVVYAEDTKGDEIYTVYVIDAESGEYV 183
Query: 121 GKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 180
G+PL G+T+ +EWAG++ LVY+TMD ILRPDK WLHKL +DQS+D CLYHEKDD +SLGL
Sbjct: 184 GQPLKGITSDIEWAGDDHLVYVTMDSILRPDKVWLHKLGSDQSSDACLYHEKDDTFSLGL 243
Query: 181 QASESKKFLFIASESKITRFVFYLDVSKP-EELRVLTPRVVGVDTAASHRGNHFFITRRS 239
QASESK++LF+ S SK T F+FYLD+SK +EL VLTPRV G+DT ASHRGNHFFI RRS
Sbjct: 244 QASESKRYLFVESGSKNTSFIFYLDISKQNKELAVLTPRVYGIDTTASHRGNHFFIKRRS 303
Query: 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299
DE +NSEL+ACP+DN +ETT+L+PHRESVK+QD QLF +H+AVYER GL K+T YRLPA
Sbjct: 304 DEFYNSELVACPLDNVAETTILLPHRESVKIQDFQLFDNHIAVYERANGLPKVTVYRLPA 363
Query: 300 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 359
+GE + LQGG++++FIDP Y++DP ES F+S +LRFHYSS+RTPPSVYDYDMD G+SVL
Sbjct: 364 IGESIGQLQGGQAIDFIDPTYAVDPEESPFNSSVLRFHYSSMRTPPSVYDYDMDSGVSVL 423
Query: 360 KKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC 419
KKI TVLGGFD +NY TERKWA+A+DGTQIP+ I+YRK+LVKLDGSDP+LLYGYGSYEIC
Sbjct: 424 KKIHTVLGGFDGSNYVTERKWAAAADGTQIPMSILYRKDLVKLDGSDPMLLYGYGSYEIC 483
Query: 420 NDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479
DP+F SR SL+DRGFI+ IA IRGGGE+GR+WYE+GK LKKKNTFTDFI CAE+LIKN
Sbjct: 484 VDPSFRGSRFSLVDRGFIYVIAHIRGGGEMGRKWYEDGKLLKKKNTFTDFIDCAEHLIKN 543
Query: 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 539
YC+KEKLCI GRSAGGLL+GAVLNMRPDLF+AAVA VPFVDV+TTMLDPTIPLTTAEWE
Sbjct: 544 KYCSKEKLCINGRSAGGLLMGAVLNMRPDLFRAAVAGVPFVDVVTTMLDPTIPLTTAEWE 603
Query: 540 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599
EWGDP KEE+Y+YMKSYSPVDNV AQ YP+ILVTAGLNDPRVMYSEPAK+VAKLRE+K D
Sbjct: 604 EWGDPRKEEYYYYMKSYSPVDNVTAQEYPNILVTAGLNDPRVMYSEPAKYVAKLRELKRD 663
Query: 600 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVGS 645
DN+LLFKCELGAGHFSKSGRFE+L+E AFTY F+++AL M + S
Sbjct: 664 DNLLLFKCELGAGHFSKSGRFEKLQEDAFTYAFILKALGMTRKLAS 709
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463781|ref|XP_002267891.1| PREDICTED: protease 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1039 bits (2686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/620 (78%), Positives = 553/620 (89%), Gaps = 1/620 (0%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
++A+ +GRIK++D+SAP R+G+YYYY RTL GKEYVQHCRRL+ EA PSV+DTM TGP
Sbjct: 75 IYADTRGRIKEDDISAPVRRGAYYYYKRTLAGKEYVQHCRRLVSPVEALPSVYDTMPTGP 134
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
DAP EH+ILDEN KA+ +YS+G F+VSP+NKLVAYAEDTKGDEIYTVY+ID ET TPV
Sbjct: 135 DAPQEHVILDENTKAQEHTYYSIGAFKVSPNNKLVAYAEDTKGDEIYTVYIIDAETRTPV 194
Query: 121 GKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 180
GKPLV +T+ +EWAGNEAL+YITMDE+LRPDK WLHKL DQS+D CLYHEKDD++SLGL
Sbjct: 195 GKPLVRITSDLEWAGNEALLYITMDEVLRPDKVWLHKLGTDQSSDSCLYHEKDDMFSLGL 254
Query: 181 QASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRRS 239
QASESK+FLF+ S SK T F+FYLDVSKPE L VLTPR+ G+DT+ASHRGNHF+I RRS
Sbjct: 255 QASESKQFLFVESGSKNTGFIFYLDVSKPEGGLTVLTPRLDGIDTSASHRGNHFYIKRRS 314
Query: 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299
+E FNSE+LACP+DN S TVLIPHRESVK+Q IQLF DHL V+ERE GL K+T YRLPA
Sbjct: 315 NEYFNSEVLACPLDNVSTMTVLIPHRESVKIQKIQLFSDHLVVHERENGLPKVTVYRLPA 374
Query: 300 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 359
VGEPL SLQGG++++F+DPVY++DPSES FSS ILRF YSSLRTP SVYDYDM GISVL
Sbjct: 375 VGEPLTSLQGGQTIDFLDPVYTVDPSESQFSSSILRFSYSSLRTPRSVYDYDMRTGISVL 434
Query: 360 KKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC 419
K IETVLG FD + Y TERKWA+ASDGTQIP+ IVYRK+LVKLDGSDPLLLYGYGSYEIC
Sbjct: 435 KNIETVLGDFDASKYITERKWANASDGTQIPLSIVYRKDLVKLDGSDPLLLYGYGSYEIC 494
Query: 420 NDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479
DP+F +SRLSLLDRGFIFAIA IRGGGE+GRQWYENGK LKK+NTFTDFIACAEYLI+
Sbjct: 495 IDPSFKASRLSLLDRGFIFAIAHIRGGGEMGRQWYENGKLLKKRNTFTDFIACAEYLIEM 554
Query: 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 539
+C+KEKLCI+G SAGGLLIGAVLNMRPDLFKAAV VPFVDV+TTMLDP+IPLTT+EWE
Sbjct: 555 KFCSKEKLCIQGGSAGGLLIGAVLNMRPDLFKAAVTRVPFVDVVTTMLDPSIPLTTSEWE 614
Query: 540 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599
EWGDP KEEFYFYMKSYSPVDN+KAQNYP ILVTAGLNDPRVMYSEPAKFVAKLR+MK D
Sbjct: 615 EWGDPRKEEFYFYMKSYSPVDNIKAQNYPKILVTAGLNDPRVMYSEPAKFVAKLRDMKMD 674
Query: 600 DNILLFKCELGAGHFSKSGR 619
DN+LLFKCELGAGHFSKSGR
Sbjct: 675 DNVLLFKCELGAGHFSKSGR 694
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 648 | ||||||
| TAIR|locus:2011997 | 710 | AT1G50380 [Arabidopsis thalian | 0.993 | 0.907 | 0.750 | 1e-274 | |
| UNIPROTKB|Q4KGJ9 | 684 | ptrB "Protease 2" [Pseudomonas | 0.950 | 0.900 | 0.408 | 3.8e-117 | |
| TIGR_CMR|CPS_3026 | 704 | CPS_3026 "protease II" [Colwel | 0.950 | 0.875 | 0.382 | 1.4e-110 | |
| TIGR_CMR|CPS_4644 | 719 | CPS_4644 "protease II" [Colwel | 0.912 | 0.821 | 0.399 | 3.4e-109 | |
| UNIPROTKB|P24555 | 686 | ptrB "oligopeptidase B" [Esche | 0.870 | 0.822 | 0.423 | 1.1e-108 | |
| TIGR_CMR|SO_0144 | 711 | SO_0144 "protease II" [Shewane | 0.868 | 0.791 | 0.404 | 3.5e-107 | |
| TAIR|locus:2205415 | 757 | AT1G69020 [Arabidopsis thalian | 0.410 | 0.351 | 0.388 | 7.5e-81 | |
| TIGR_CMR|CPS_0086 | 723 | CPS_0086 "prolyl endopeptidase | 0.842 | 0.755 | 0.324 | 4.8e-66 | |
| TAIR|locus:2158098 | 792 | AT5G66960 [Arabidopsis thalian | 0.407 | 0.333 | 0.365 | 2.5e-60 | |
| DICTYBASE|DDB_G0292866 | 866 | DDB_G0292866 "oligopeptidase B | 0.679 | 0.508 | 0.322 | 5e-57 |
| TAIR|locus:2011997 AT1G50380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2641 (934.7 bits), Expect = 1.0e-274, P = 1.0e-274
Identities = 484/645 (75%), Positives = 567/645 (87%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
+FAE++GRIK++D+SAP R+G YYYY + L+GKEY+QHCRRLI +N+A PSV+DTM TGP
Sbjct: 66 LFAEIRGRIKEDDISAPLRKGPYYYYEKNLQGKEYIQHCRRLITDNKAEPSVYDTMPTGP 125
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
DAPPEH+ILDEN KA+ +Y +G F+ SPD+KLVAYAEDTKGDEIYTV VID E PV
Sbjct: 126 DAPPEHVILDENTKAQEHDYYRIGAFKASPDHKLVAYAEDTKGDEIYTVNVIDSEALKPV 185
Query: 121 GKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 180
G+ L G+T+ +EWAGN+AL+YITMDEILRPDK WLHKL +QS+D+CLYHEKDD++SL L
Sbjct: 186 GQQLKGLTSYLEWAGNDALLYITMDEILRPDKVWLHKLGTEQSSDVCLYHEKDDMFSLEL 245
Query: 181 QASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVGVDTAASHRGNHFFITRRS 239
ASES K+LF+ASESK TRFVF LDVSK ++ LRVLTPRV G+D++ SHRGNHFFI RRS
Sbjct: 246 HASESHKYLFVASESKTTRFVFSLDVSKTQDGLRVLTPRVDGIDSSVSHRGNHFFIQRRS 305
Query: 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299
E +NSEL+ACPVD+TS+TTVL+PHRESVK+Q+IQLF DHLAV+ERE GLQKIT +RLPA
Sbjct: 306 TEFYNSELIACPVDDTSKTTVLLPHRESVKIQEIQLFRDHLAVFERENGLQKITVHRLPA 365
Query: 300 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 359
G+PL+ LQGG++V F+DPVYS+D +ES FSSR+LRF Y S++TPPSVYDYDMD G SV+
Sbjct: 366 EGQPLEGLQGGRNVSFVDPVYSVDSTESEFSSRVLRFKYCSMKTPPSVYDYDMDSGTSVV 425
Query: 360 KKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC 419
KKI+TVLGGFD +NY TERKW +ASDGTQIP+ IVY K L KLDGSDPLLLYGYGSYEI
Sbjct: 426 KKIDTVLGGFDASNYVTERKWVAASDGTQIPMSIVYNKKLAKLDGSDPLLLYGYGSYEIS 485
Query: 420 NDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479
DP F +SRLSLLDRGF F IA +RGGGE+GRQWYENGK LKKKNTFTDFIACAE LI+
Sbjct: 486 VDPYFKASRLSLLDRGFTFVIAHVRGGGEMGRQWYENGKLLKKKNTFTDFIACAERLIEL 545
Query: 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 539
YC+KEKLC+EGRSAGGLL+GAV+NMRPDLFK +A VPFVDVLTTMLDPTIPLTT+EWE
Sbjct: 546 KYCSKEKLCMEGRSAGGLLMGAVVNMRPDLFKVVIAGVPFVDVLTTMLDPTIPLTTSEWE 605
Query: 540 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599
EWGDP KEEFYFYMKSYSPVDNV AQNYP++LVTAGLNDPRVMYSEP K+VAKLREMKTD
Sbjct: 606 EWGDPRKEEFYFYMKSYSPVDNVTAQNYPNMLVTAGLNDPRVMYSEPGKWVAKLREMKTD 665
Query: 600 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVG 644
+N+LLFKCELGAGHFSKSGRFE+L+E AFT+ F+M+ L M+P+ G
Sbjct: 666 NNVLLFKCELGAGHFSKSGRFEKLQEDAFTFAFMMKVLDMIPASG 710
|
|
| UNIPROTKB|Q4KGJ9 ptrB "Protease 2" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
Identities = 265/649 (40%), Positives = 369/649 (56%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
+F E+KGRI + D+S P G Y YYTRT G EY +H R P D++
Sbjct: 58 LFQEIKGRILETDLSLPSPWGPYLYYTRTTAGDEYARHYR-------CPRPADDSLTV-- 108
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
D E L+LD N A G GF+S+G F +SPD++ +AY+ DT G+EIYT++V ++ +
Sbjct: 109 DESREQLLLDPNALANG-GFFSLGAFSISPDHQRLAYSLDTTGEEIYTLFVKELASNKVS 167
Query: 121 GKPLVGVTASVEWAGNEALVYI-TMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLG 179
S+ WA + ++ +D+ RP K ++L+ + ++ +HE D + L
Sbjct: 168 ELSFDNCDGSMTWANDSLTLFFGELDDTHRPHKLLRYRLDGTAAEEV--FHEPDGRFFLH 225
Query: 180 LQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHR---GNHFFI 235
S S++ L ++ SK T + LD ++P+ L PRV G + H G +
Sbjct: 226 CYRSSSERQLLLSLGSKTTGETWALDATQPQLPFTCLAPRVEGHEYDVDHGLLDGQWTWF 285
Query: 236 TRRSDELFNSELLACP----VDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQK 291
R + + N L + + +L+PH V L + L + + REGGL
Sbjct: 286 IRSNRDGINFALYQAADNGAIPEQDDWQLLVPHNPEVMLDGVTLNAAAMTLSLREGGLPI 345
Query: 292 ITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESV-FSSRILRFHYSSLRTPPSVYDY 350
I + P + L + V+ D YS+ S+ FSS +R Y +L P V
Sbjct: 346 IEVH-------P-RDLPVYR-VQLPDAAYSLHVQNSLEFSSERIRLRYEALNRPAQVRQL 396
Query: 351 DMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLL 410
+ G + K VLG FD Y ++R WA+A+DGTQ+PI +V +++ L PL L
Sbjct: 397 QLADGQQQVLKETPVLGPFDPEAYVSQRLWATAADGTQVPISLVVKRDC--LGQPTPLYL 454
Query: 411 YGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFI 470
YGYG+Y DP F+ +RLSLLDRG FAIA +RGGGELG WY GK K+NTF+DFI
Sbjct: 455 YGYGAYGESLDPWFSHARLSLLDRGVAFAIAHVRGGGELGEAWYRAGKQEHKQNTFSDFI 514
Query: 471 ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPT 530
ACAE+LI + ++L I G SAGGLLIGAVLN RP+LFK A+A VPFVDVL TMLDP
Sbjct: 515 ACAEHLIAQGLTSAQQLAISGGSAGGLLIGAVLNQRPELFKVAIAEVPFVDVLNTMLDPE 574
Query: 531 IPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFV 590
+PLT E++EWG+P + E Y +K+Y+P +NV+AQ YP LV AG ND RV Y E AK+V
Sbjct: 575 LPLTVTEYDEWGNPEEPEVYARIKAYAPYENVRAQAYPATLVIAGYNDSRVQYWEAAKWV 634
Query: 591 AKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639
A+LR +TDDN LL K ELGAGH SGR++ LR+ A Y F++ L +
Sbjct: 635 ARLRATRTDDNPLLLKTELGAGHGGMSGRYQGLRDVALEYAFILNILGL 683
|
|
| TIGR_CMR|CPS_3026 CPS_3026 "protease II" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
Identities = 250/653 (38%), Positives = 368/653 (56%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
+F ELK RI ++D + P + G Y+Y++ +EY + R T TG
Sbjct: 76 LFEELKARIVKDDNTVPEKDGKYWYHSEINGEQEYSNYYR-------------STSFTGE 122
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
+ + L+LD N +A+ FY +G +SP+++L+ +ED IYT+Y D+ +
Sbjct: 123 N---KTLLLDVNDRAKDHEFYDLGDLSISPNDQLMTISEDIDSRRIYTIYFKDLNKSSDS 179
Query: 121 GKP-----LVGVTASVEWAG-NEALVYITMD-EILRPDKAWLHKLEADQSNDICLYHEKD 173
P L+ + WA N+ + Y+ D E L + + HKL + QS+D+ +Y E D
Sbjct: 180 DDPYLPDTLIETEGQIVWANDNKTVFYVKKDLETLLGTQVYRHKLGSPQSDDVLVYEEDD 239
Query: 174 DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNH 232
+ + L S ++I + + L +P+ E L P + A G H
Sbjct: 240 YSFYMSLDKSRDDSQIYICLHATESTHYLALSADEPDGEFDELFPYQEQHEYHADKMGEH 299
Query: 233 FFITRRSDELFNSELLACPVDNTSETT---VLIPHRESVKLQDIQLFIDHLAVYEREGGL 289
F+I + N +L+ + + +IPHR+ V L+ I+LF + V ERE G
Sbjct: 300 FYIVTNF-QAKNFKLMKAAISQVHDINNWQEVIPHRKDVLLEGIELFQNFTVVTEREHGQ 358
Query: 290 QKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVF-SSRILRFHYSSLRTPPSVY 348
+ + GE + + F DP Y ++ S R +YSSL TP S++
Sbjct: 359 IRFIVHTTQ--GE---NAGHQYPLSFDDPCYFACLGDNPEPKSTTARLYYSSLTTPGSLF 413
Query: 349 DYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPL 408
++D+ G L K + VLG F +Y +ER + +A DGT++P+ IVYR + + DGS+PL
Sbjct: 414 EFDLATGERKLLKQQKVLGDFTKEDYQSERLFITARDGTEVPVSIVYRSDTFQKDGSNPL 473
Query: 409 LLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTD 468
L YGYG+Y I DP F+S LSLLDRGF++ IA +RG LGR+WYE GK K+NTF D
Sbjct: 474 LQYGYGAYGITIDPDFSSQTLSLLDRGFVYVIAHVRGSEMLGREWYETGKMAHKQNTFND 533
Query: 469 FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD 528
FI + L++ Y K+K+ G SAGGLL+GAV+N P+L+ A VPF+DVLTTMLD
Sbjct: 534 FIDVTKALVEQGYGAKDKIFASGGSAGGLLMGAVVNQAPELYLGIGAHVPFLDVLTTMLD 593
Query: 529 PTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAK 588
+IPLTT E+ EWG+P + + Y + +YSP+DN+ AQ+YPHILVT GL+D +V Y EP K
Sbjct: 594 ESIPLTTNEYNEWGNPNEAQAYQSILAYSPIDNISAQHYPHILVTTGLHDSQVQYFEPMK 653
Query: 589 FVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLP 641
+VAK+RE KTDDN+LLFK ++ AGH SGRF+ L+E A +F +S+LP
Sbjct: 654 WVAKMREFKTDDNLLLFKTDMEAGHGGASGRFKSLKEKALEMSFF---ISLLP 703
|
|
| TIGR_CMR|CPS_4644 CPS_4644 "protease II" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 246/616 (39%), Positives = 354/616 (57%)
Query: 33 KEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDN 92
K Y + ++ NE P V + +G + ++L+ N A+ +Y V SPD
Sbjct: 117 KGYFYYASQMQGENEYPIYVRSSDFSGSNL---EVLLNVNELAKAHDYYQVSGLSASPDG 173
Query: 93 KLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAG-NEALVYITMD-EILRP 150
KL+AY EDT IYTV DI T + L G + W N+ + YI D + L
Sbjct: 174 KLLAYGEDTVSRRIYTVQFKDIAGKTLLDDRLEGTNGGIVWGNDNKTVYYIKKDPQTLLG 233
Query: 151 DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210
+ + H L Q+ D +Y E + Y GL S+ +FI S V +D +
Sbjct: 234 YQVFRHTLGTPQATDEMVYEESNKAYYTGLSKSKDGSSVFIWHSSTEASGVSVIDADNAK 293
Query: 211 EL-RVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV---LIPHRE 266
+ + R G + + S + ++I + N L+ + + T +IP +
Sbjct: 294 AMPKKFIEREEGHEYSISKMNDWYYINTNW-QATNFRLMKVNKKHLGDKTQWQDVIPAND 352
Query: 267 SVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKS--VEFIDPVYSIDP 324
+VKL+D +LF +HL +RE G+ ++T ++ L GK + F D Y++
Sbjct: 353 AVKLEDYELFANHLVYQQRENGISRLT----------IQELSSGKKQQLSFNDTAYTLSL 402
Query: 325 -SESVFSSRILRFHYSSLRTPPSVYDYDMD-MGISVLKKIETVLGGFDTNNYFTERKWAS 382
+ + LR +Y+S TP + YD D++ + + LK+ + VLG FD+NNY +ER +
Sbjct: 403 YGNNELKNNKLRLYYTSFTTPGTHYDVDLNTLDKTQLKQAK-VLGDFDSNNYASERIFVK 461
Query: 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQ 442
A DG ++P+ +VYRK+ K DG++PL Y YGSY DP+F+ SRLSLLDRGF++A+A
Sbjct: 462 ARDGKKVPVSLVYRKDKFKKDGTNPLYQYAYGSYGHTIDPSFSVSRLSLLDRGFVYAVAH 521
Query: 443 IRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAV 502
IRG LGR WYE+GK L K NTFTDFI + L Y KE + G SAGGLL+GAV
Sbjct: 522 IRGSEMLGRPWYEDGKKLTKMNTFTDFIDVTKDLTAQGYGDKENVFAVGGSAGGLLMGAV 581
Query: 503 LNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV 562
+NM P+ +K AAVPFVDV+TTMLD +IPLTT E++EWG+P ++ +Y YM SYSP D V
Sbjct: 582 INMAPEQYKGIAAAVPFVDVVTTMLDESIPLTTNEFKEWGNPKEKTYYDYMLSYSPYDQV 641
Query: 563 KAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFER 622
KAQ+YP+ILVT GL+D +V Y EP K+VAKLR+ KTDDN+LLFK ++ AGH SGRF+R
Sbjct: 642 KAQDYPNILVTTGLHDSQVQYFEPMKWVAKLRDYKTDDNLLLFKTDMEAGHGGASGRFKR 701
Query: 623 LREAAFTYTFLMRALS 638
+ + A Y+F + L+
Sbjct: 702 IHDTALQYSFFIDLLN 717
|
|
| UNIPROTKB|P24555 ptrB "oligopeptidase B" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
Identities = 249/588 (42%), Positives = 344/588 (58%)
Query: 68 ILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV 127
+LD N +A FYS+G ++PDN ++A AED Y + ++ETG + L V
Sbjct: 114 LLDANKRAAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV 173
Query: 128 TASVEWAGNEALVYITMDE--ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASES 185
S WA + + Y L P + W H + S D +Y EKDD Y + L + S
Sbjct: 174 EPSFVWANDSWIFYYVRKHPVTLLPYQVWRHAIGTPASQDKLIYEEKDDTYYVSLHKTTS 233
Query: 186 KKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITRRSDELFN 244
K ++ I S T V LD + E V PR + + H + F++ R + N
Sbjct: 234 KHYVVIHLASATTSEVRLLDAEMADAEPFVFLPRRKDHEYSLDHYQHRFYL-RSNRHGKN 292
Query: 245 SELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPL 304
L + + + LIP RE++ L+ LF D L V ER+ GL T+ R +
Sbjct: 293 FGLYRTRMRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGL---TSLR--QINRKT 347
Query: 305 KSLQGGKSVEFIDPVYS--IDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS-VLKK 361
+ + G + F DP Y I + ++R LR+ YSS+ TP ++++ DMD G VLK+
Sbjct: 348 REVIG---IAFDDPAYVTWIAYNPEPETAR-LRYGYSSMTTPDTLFELDMDTGERRVLKQ 403
Query: 362 IETVLGGFDTNNYFTERKWASASDGTQIPICIVY-RKNLVKLDGSDPLLLYGYGSYEICN 420
E + GF NY +E W A DG ++P+ +VY RK+ K G +PLL+YGYGSY
Sbjct: 404 TE--VPGFYAANYRSEHLWIVARDGVEVPVSLVYHRKHFRK--GHNPLLVYGYGSYGASI 459
Query: 421 DPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 480
D F+ SRLSLLDRGF++AI +RGGGELG+QWYE+GKFLKKKNTF D++ + L+K
Sbjct: 460 DADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLG 519
Query: 481 YCTKEKLCIE-GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 539
Y + LC G SAGG+L+G +N RP+LF +A VPFVDV+TTMLD +IPLTT E+E
Sbjct: 520 YGSPS-LCYAMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFE 578
Query: 540 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599
EWG+P ++Y YMKSYSP DNV AQ YPH+LVT GL+D +V Y EPAK+VAKLRE+KTD
Sbjct: 579 EWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTD 638
Query: 600 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR-ALSMLPSVGSE 646
D++LL ++ +GH KSGRF+ A Y FL+ A LP+ ++
Sbjct: 639 DHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLVALAQGTLPATPAD 686
|
|
| TIGR_CMR|SO_0144 SO_0144 "protease II" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
Identities = 239/591 (40%), Positives = 343/591 (58%)
Query: 65 EHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL 124
E L+LD N +A+G FY +G VSPD ++A+ ED +Y +Y DIE+G + L
Sbjct: 131 EQLMLDVNERAKGHEFYGLGGVSVSPDETMLAFGEDVLSRRVYNIYFKDIESGAMITDVL 190
Query: 125 VGVTASVEWAG-NEALVYITMD-EILRPDKAWLHKLEADQSNDICLYHEKDDIY--SLGL 180
+ W N + YI D + L ++ + H+L QS D+ +Y E+DD Y SLG
Sbjct: 191 ENTEGRIVWGNDNRHVFYIAKDLQTLLGNRVYRHELGTPQSRDVLVYEEQDDAYYISLGK 250
Query: 181 QASESKKFLFIASESKITRFVFYLDVSKPEEL-RVLTPRVVGVDTAASHRGNHFFITRRS 239
ES+ LF ES T V LD + P L + + R G + + S G+ +++
Sbjct: 251 SLDESQIVLF--HESTTTSEVSVLDANDPLSLFKPVLAREEGHEYSVSKLGDSYYVLTNW 308
Query: 240 DELFNSELLACPVDNTSETTV---LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYR 296
+ N L+ + + ++ + ++ H + +L+D + D+L + RE GL +I
Sbjct: 309 -QATNFRLMKVAIKDAADKSKWQEVVAHNPNARLEDELVLKDYLIIQTRENGLTRIKV-- 365
Query: 297 LPAVGEPLKSLQGGKSVEFIDPVY--SIDPSESVFSSRILRFHYSSLRTPPSVYDYDM-D 353
+P G+ K + + F +P Y +D + S + LR YSSL TP ++Y+Y + +
Sbjct: 366 MPFNGQ--KPFE----LSFDEPAYVLGLDVNAQQDSDK-LRVFYSSLTTPETIYEYHLSN 418
Query: 354 MGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGY 413
L K E VLGGFD Y ER + +A DG ++P+ +VYRK+ K DG++PL YGY
Sbjct: 419 PDRRDLLKQEQVLGGFDAGAYRAERVFVTARDGAKVPVSLVYRKDKFKKDGTNPLYQYGY 478
Query: 414 GSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACA 473
GSY +P F+SS +SLLDRGF++AIA +RGG LGR WY+ GK L KKN+F DFI
Sbjct: 479 GSYGYTVEPDFSSSVISLLDRGFVYAIAHVRGGEMLGRPWYDAGKLLNKKNSFYDFIDVT 538
Query: 474 EYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPL 533
L + Y K K+ G SAGGLL+GA+ NM P+ + A A VPFVDV+TTMLD +IPL
Sbjct: 539 TALTEQGYGDKNKVVAAGGSAGGLLMGAIANMAPEKYFAIAAHVPFVDVVTTMLDESIPL 598
Query: 534 TTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKL 593
TT E++EWG+P + ++ YM SYSP DNV YPH+LVT GL+D +V Y EPAK+VAKL
Sbjct: 599 TTNEYDEWGNPNDKTYFDYMLSYSPYDNVADHEYPHLLVTTGLHDSQVQYFEPAKWVAKL 658
Query: 594 REM-----KTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639
RE+ K DD +LLF ++ AGH KSGR+ + ++ A Y F + L M
Sbjct: 659 REVQNKWYKLDDKVLLFHVDMDAGHGGKSGRYRQYQDTAQEYAFFLSLLGM 709
|
|
| TAIR|locus:2205415 AT1G69020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 512 (185.3 bits), Expect = 7.5e-81, Sum P(3) = 7.5e-81
Identities = 105/270 (38%), Positives = 161/270 (59%)
Query: 371 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLS 430
++ Y ER+ S+ DG ++P+ I+Y + K S P +L GYG+Y D ++ ++RLS
Sbjct: 483 SDTYVCERQEVSSHDGVEVPLTILYSREAWKKSES-PGMLIGYGAYGEVLDKSWCTNRLS 541
Query: 431 LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIE 490
+LDRG++ A A +RGGG W+++G K+N+ DFI A+YL++ Y + L
Sbjct: 542 MLDRGWVIAFADVRGGGSGEFSWHKSGTRSLKQNSIQDFIYSAKYLVEKGYVHRHHLAAV 601
Query: 491 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFY 550
G SAG +L A +NM P LF+A + VPFVDVL T+ DP +PLT + EE+G+P + +
Sbjct: 602 GYSAGAILPAAAMNMHPSLFQAVILKVPFVDVLNTLSDPNLPLTLLDHEEFGNPDNQTDF 661
Query: 551 FYMKSYSPVDNVKAQN-YPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD--NILLFKC 607
+ SYSP D ++ YP +LVT +D RV E AK+VAK+R+ D ++ K
Sbjct: 662 GSILSYSPYDKIRKDVCYPSMLVTTSFHDSRVGVWEGAKWVAKIRDSTCHDCSRAVILKT 721
Query: 608 ELGAGHFSKSGRFERLREAAFTYTFLMRAL 637
+ GHF + GR+ + E AF Y FL++ +
Sbjct: 722 NMNGGHFGEGGRYAQCEETAFDYAFLLKVM 751
|
|
| TIGR_CMR|CPS_0086 CPS_0086 "prolyl endopeptidase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 635 (228.6 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 191/588 (32%), Positives = 291/588 (49%)
Query: 67 LILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG 126
L LD N +E G S+G S D + AYA G + + +ID+ET + PL+
Sbjct: 148 LFLDPNTFSED-GTTSMGQLSFSKDGSIAAYAISEGGSDWRKIIIIDVETKKVLETPLID 206
Query: 127 VTAS-VEWAGNEALVYITMD-----EI-LRPD--KAWLHKLEADQSNDICLYH---EKDD 174
V S + W NE Y + D E+ + D K + H L Q D ++ E+
Sbjct: 207 VKFSDISWFKNEGFYYSSYDKPEGSELSAKTDQHKLYYHVLGQPQKEDKVIFGNTAEQKR 266
Query: 175 IYSLGLQASESKKFLFIASESKITRFVFYL-DVSKPEE-LRVLTPRVVGVDTAASHRGNH 232
Y +G ++ +FL I+ + YL D++KP L +T DT
Sbjct: 267 RY-VGGTVTDDNRFLLISGAISTSGNDLYLKDLTKPNSPLLTITDNF-DADT-------- 316
Query: 233 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKI 292
+ I D+LF L P N TV S D D++ GG
Sbjct: 317 YVIENEGDKLFLVTNLGAP--NKKIVTVNAKAPASKNWTDFIAETDYVLSASTGGGFF-F 373
Query: 293 TTYRLPAVGEPLKSLQGGKSVEFID-P-VYSIDPSESVFSSRILRFHYSSLRTPPSVYDY 350
T Y + A+ + + GK V I+ P V S E L + +S+ +TP ++Y Y
Sbjct: 374 TEYMVDAISKVYQYDYQGKQVREINLPGVGSASALEGDKDESTLYYSFSNYKTPGTIYSY 433
Query: 351 DMDMGIS-VLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLL 409
++D G S V +K FD++ Y +++ + + DGT++P+ I Y+K ++L+G +P +
Sbjct: 434 NIDKGNSDVYRKSGAK---FDSDAYESKQVFYPSKDGTKVPMIITYKKG-IELNGKNPTI 489
Query: 410 LYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF 469
LYGYG + I P F+ SR L++G I+A+A +RGGGE G+ W++ G L K+N F DF
Sbjct: 490 LYGYGGFNISLTPRFSVSRAVWLEQGGIYAVANLRGGGEYGKTWHKAGTQLDKQNVFDDF 549
Query: 470 IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP 529
IA EYLIK Y + + L I G S GGLL+GAV+ RPDL + A+ AV +D+L
Sbjct: 550 IAAGEYLIKQDYTSSDYLAINGGSNGGLLVGAVMTQRPDLMQVALPAVGVLDMLRYH--- 606
Query: 530 TIPLTTAEWE-EWGDPWK-EEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMYSEP 586
T A W ++G + EE + Y+K YSPV NVKA +YP +VT G +D RV+ +
Sbjct: 607 TFT-AGAGWAYDYGTAEQSEEMFTYLKGYSPVHNVKAGVSYPATMVTTGDHDDRVVPAHS 665
Query: 587 AKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634
KF A+L+ + + L + E AGH + + + + + A Y F +
Sbjct: 666 FKFAAELQAKQAGNAPTLIRIETNAGHGAGTPVSKTIEQYADIYAFTL 713
|
|
| TAIR|locus:2158098 AT5G66960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 430 (156.4 bits), Expect = 2.5e-60, Sum P(2) = 2.5e-60
Identities = 98/268 (36%), Positives = 153/268 (57%)
Query: 371 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLS 430
T Y + S+ DG +P+ IVY + K + P LL+ +G+Y D + S S
Sbjct: 526 TEFYACDYHEVSSHDGAMVPLSIVYSR-AQKEENQKPGLLHVHGAYGEMLDKRWRSELKS 584
Query: 431 LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIE 490
LLDRG++ A A +RGGG G++W+++G+ KK N+ D+I CA+YL++N + KL
Sbjct: 585 LLDRGWVLAYADVRGGGGKGKKWHQDGRGAKKLNSIKDYIQCAKYLVENNIVEENKLAGW 644
Query: 491 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFY 550
G SAGGL++ + +N PDLF+AAV VPF+D T++ P +PLT ++EE+G P +
Sbjct: 645 GYSAGGLVVASAINHCPDLFQAAVLKVPFLDPTHTLIYPILPLTAEDYEEFGYPGDINDF 704
Query: 551 FYMKSYSPVDNV-KAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCEL 609
++ YSP DN+ K YP +LVT+ N R E AK+VA++R+ +D L
Sbjct: 705 HAIREYSPYDNIPKDVLYPAVLVTSSFNT-RFGVWEAAKWVARVRDNTFNDPERPVLLNL 763
Query: 610 GAGHFSKSGRFERLREAAFTYTFLMRAL 637
+ RF + +E+A FL++ +
Sbjct: 764 TTD-IVEENRFLQTKESALEIAFLIKMM 790
|
|
| DICTYBASE|DDB_G0292866 DDB_G0292866 "oligopeptidase B" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 5.0e-57, Sum P(2) = 5.0e-57
Identities = 155/480 (32%), Positives = 258/480 (53%)
Query: 155 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV----SKP- 209
L++ E +QS ++ +Y E++ Y L + + +++F S KI+ ++Y + S+P
Sbjct: 343 LNEEEVNQS-ELMIY-EENPAYYLDIYVPKDGEYIFYLSNCKISTLIYYNKLHDNPSEPI 400
Query: 210 --EELRVLTPRVVGVDTAASHRGNHFFITRRSDEL-FNSELLACPVDNTS--ETTVLIPH 264
+ +++ RV ++ A H G+ F+I +++ N + ++N + + IP
Sbjct: 401 TSKSYKIMLSRVDNLEYYAEHNGDEFYIFANANKGDLNIYKVKDTIENGKFHDLELFIPS 460
Query: 265 RESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID--PVYSI 322
++D+ ++ D+L + + L K R+ + + ++ + KS+E I P I
Sbjct: 461 EAQSMIKDVDMYKDYLVLND----LHKFQP-RIRIISKNAETNRFDKSLEKIITFPHKII 515
Query: 323 DPSESVFSSRILRFHYS-SLRTPP-SVYDYDMDM--G-ISVL-KKIETVLGGFDTNNYFT 376
+ S V H+ S TP +V + + G I++L + IE + + + T
Sbjct: 516 ELSMGVNGGYENNEHFFLSYCTPTQNVIRTKISLKDGTITILGESIERGPLTINPDAFET 575
Query: 377 ERKWA-SASDGT-QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR 434
+ W S SD + +IP+ I Y K V+ DG P +L+GYGSY +N L L++
Sbjct: 576 DILWVPSKSDPSIKIPLSICYNKKAVRFDGKTPCVLHGYGSYGTVYSLLYNVEDLLLMNA 635
Query: 435 GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSA 494
GFI A A +RGG ELGR WY +GK L KKNTF+D+I C EYL +N Y + L G SA
Sbjct: 636 GFIVARAHVRGGSELGRTWYNDGKLLNKKNTFSDYIDCVEYLFENKYTSPNYLIGRGSSA 695
Query: 495 GGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYF-YM 553
GGLL+ V P F ++ VPF DVLT+MLD ++PLT E+ EWG+P ++ F Y+
Sbjct: 696 GGLLMCNVALTYPHYFSGIISQVPFADVLTSMLDESLPLTIHEYGEWGNPNLDKQVFNYI 755
Query: 554 KSYSP---VD--NVKA--QNYPHILVTAGLNDPRVMYSEPAKFVAKLR-EMKT----DDN 601
K Y P +D N+++ ++ P++ +T +D RV + +P K+VAKLR ++K+ DDN
Sbjct: 756 KQYDPYILLDDPNIQSSLKSLPNLYITCSTSDYRVPFWQPLKWVAKLRNKLKSLTHGDDN 815
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_Genewise1_v1.C_LG_VII0238 | hypothetical protein (712 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| eugene3.89040001 | Predicted protein (206 aa) | • | 0.432 | ||||||||
| gw1.21444.1.1 | Phosphoribosylaminoimidazole-succinocarboxamide synthase (285 aa) | • | 0.420 | ||||||||
| gw1.XIV.1527.1 | hexaprenyldihydroxybenzoate methyltransferase (EC-2.1.1.114) (250 aa) | • | 0.404 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 648 | |||
| COG1770 | 682 | COG1770, PtrB, Protease II [Amino acid transport a | 0.0 | |
| PRK10115 | 686 | PRK10115, PRK10115, protease 2; Provisional | 1e-158 | |
| pfam02897 | 412 | pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, | 1e-89 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 4e-74 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 1e-62 | |
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 8e-18 |
| >gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 717 bits (1852), Expect = 0.0
Identities = 308/642 (47%), Positives = 406/642 (63%), Gaps = 32/642 (4%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
+F E+KGRIK++D+S P+R+G Y YY+RT EGKEY +CR+ E
Sbjct: 65 IFEEIKGRIKEDDLSVPYRKGPYEYYSRTEEGKEYPIYCRQPDEGGEG------------ 112
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
E ++LD N +AEG F+S+G +SPD+ L+AY+ D GDE YT+ D+ TG +
Sbjct: 113 ----EEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEEL 168
Query: 121 GKPLVGVTASVEWAG-NEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLG 179
+ + S WA + L Y +DE RPDK W H+L S+D +Y EKDD + L
Sbjct: 169 PDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLS 228
Query: 180 LQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITRR 238
+ S S+ ++ I+ S IT V LD PE E +V+ PR GV+ + H G+ F+I
Sbjct: 229 VGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYI-LS 287
Query: 239 SDELFNSELLACPVDNTSET-TVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 297
+ + N +L+ PV LIPHRE V+L+ + LF DHL + ER+ GL ++
Sbjct: 288 NADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDR 347
Query: 298 PAVGEPLKSLQGGKSVEFIDPVYS--IDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMG 355
E + F D YS + + S R LR+ YSS+ TP +++DYDM G
Sbjct: 348 KTGEER--------GIAFDDEAYSAGLSGNPEFDSDR-LRYSYSSMTTPATLFDYDMATG 398
Query: 356 ISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGS 415
L K + V GGFD +Y + R WA+A DG Q+P+ +VYRK+ KLDGS PLLLYGYG+
Sbjct: 399 ERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKD-TKLDGSAPLLLYGYGA 457
Query: 416 YEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEY 475
Y I DP+F+ +RLSLLDRGF++AIA +RGGGELGR WYE+GK L KKNTFTDFIA A +
Sbjct: 458 YGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARH 517
Query: 476 LIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTT 535
L+K Y + +++ G SAGG+L+GAV NM PDLF +A VPFVDVLTTMLDP++PLT
Sbjct: 518 LVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTV 577
Query: 536 AEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLRE 595
EW+EWG+P E+Y Y+KSYSP DNV+AQ YP ILVT GLNDPRV Y EPAK+VAKLRE
Sbjct: 578 TEWDEWGNPLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQYWEPAKWVAKLRE 637
Query: 596 MKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637
+KTD N LL K + AGH SGRF+RL E AF Y FL++
Sbjct: 638 LKTDGNPLLLKTNMDAGHGGASGRFQRLEEIAFEYAFLLKLA 679
|
Length = 682 |
| >gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional | Back alignment and domain information |
|---|
Score = 471 bits (1214), Expect = e-158
Identities = 261/642 (40%), Positives = 360/642 (56%), Gaps = 37/642 (5%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
+ E+ RI Q +VSAP+ + Y Y G EY + R+ + E D ET
Sbjct: 61 ILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQSAFSEEW-----DEWET-- 113
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
+LD N +A FY++G ++PDN ++A AED Y + ++ETG
Sbjct: 114 -------LLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY 166
Query: 121 GKPLVGVTASVEWAGNEALVYITMDE--ILRPDKAWLHKLEADQSNDICLYHEKDDIYSL 178
+ L V S WA + Y L P + W H + S D +Y EKDD + +
Sbjct: 167 PELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYV 226
Query: 179 GLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITR 237
L + SK ++ I S T V LD + E V PR + + H H F R
Sbjct: 227 SLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFYLR 285
Query: 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 297
+ N L V + + LIP RE++ L+ LF D L V ER+ GL T+ R
Sbjct: 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGL---TSLR- 341
Query: 298 PAVGEPLKSLQGGKSVEFIDPVY----SIDPSESVFSSRILRFHYSSLRTPPSVYDYDMD 353
+ + + G + F DP Y + +P +SR LR+ YSS+ TP ++++ DMD
Sbjct: 342 -QINRKTREVIG---IAFDDPAYVTWIAYNPEPE--TSR-LRYGYSSMTTPDTLFELDMD 394
Query: 354 MG-ISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYG 412
G VLK+ E + GFD NY +E W +A DG ++P+ +VY + + G +PLL+YG
Sbjct: 395 TGERRVLKQTE--VPGFDAANYRSEHLWITARDGVEVPVSLVYHRKHFR-KGHNPLLVYG 451
Query: 413 YGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC 472
YGSY D F+ SRLSLLDRGF++AI +RGGGELG+QWYE+GKFLKKKNTF D++
Sbjct: 452 YGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDA 511
Query: 473 AEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 532
+ L+K Y + G SAGG+L+G +N RP+LF +A VPFVDV+TTMLD +IP
Sbjct: 512 CDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIP 571
Query: 533 LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAK 592
LTT E+EEWG+P ++Y YMKSYSP DNV AQ YPH+LVT GL+D +V Y EPAK+VAK
Sbjct: 572 LTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAK 631
Query: 593 LREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634
LRE+KTDD++LL ++ +GH KSGRF+ A Y FL+
Sbjct: 632 LRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLI 673
|
Length = 686 |
| >gnl|CDD|217275 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal beta-propeller domain | Back alignment and domain information |
|---|
Score = 284 bits (728), Expect = 1e-89
Identities = 111/375 (29%), Positives = 171/375 (45%), Gaps = 38/375 (10%)
Query: 2 FAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPD 61
EL I +D+SAPFR+G YYYY R GK RR
Sbjct: 59 KEELTALINYDDISAPFRKGGYYYYFRNTGGKNQSVLYRRDA--------------GEGP 104
Query: 62 APPEHLILDENVKAEGRGFYSVGCFQ-VSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
E + LD N +E F SPD +L+AY+ G + YT+ D+ETG P+
Sbjct: 105 GETEEVFLDPNTLSEDGDFTVALDGYAFSPDGRLLAYSLSLSGSDWYTIRFRDVETGEPL 164
Query: 121 GKPLVGVTAS-VEWAGN-EALVYITMDEILR-----PDKAWLHKLEADQSNDICLYHEKD 173
L GV S + WA + + Y DE R K W H+L QS D+ ++ E D
Sbjct: 165 PDVLEGVKFSGIVWAPDNKGFFYSRYDEPERGSTNLNQKVWRHRLGTPQSQDVLVFEEPD 224
Query: 174 DIY-SLGLQASESKKFLFIASESKIT-RFVFYLDVSKPE--ELRVLTPRVVGVDTAASHR 229
+ + LG + S+ K+LFI+S S ++ LD+++ + LR + PR GV H
Sbjct: 225 EPFWYLGAERSDDGKYLFISSASGTDVNELYVLDLAQEKDGPLRKVVPRFDGVYYYVEHE 284
Query: 230 GNHFFITRRSDELFNSELLACPVDNTSE---TTVLIPHRESVKLQDIQLFIDHLAVYERE 286
G+ F+ +D N L+ +++ S V++ HRE V L++I +F ++L + R
Sbjct: 285 GDTFYF-LTNDGAPNFRLVRVDLNDPSPADWKDVIVEHREDVLLEEITVFGNYLVLSYRR 343
Query: 287 GGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPS 346
L ++ + L G + EF+ V S+ + + LR+ +SS TP +
Sbjct: 344 DALSRLQVFDLGGGGVLFE--------EFLPGVGSVSSASGEYDDDELRYSFSSFLTPGT 395
Query: 347 VYDYDMDMGISVLKK 361
+YD D+ G L K
Sbjct: 396 IYDLDLATGELELLK 410
|
This unusual 7-stranded beta-propeller domain protects the catalytic triad of prolyl oligopeptidase (see pfam00326), excluding larger peptides and proteins from proteolysis in the cytosol. Length = 412 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 4e-74
Identities = 100/219 (45%), Positives = 124/219 (56%), Gaps = 9/219 (4%)
Query: 422 PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 481
P+F+ + L DRG++ A+A RG G GR W++ GK +N F DFIA AEYLI Y
Sbjct: 1 PSFSWNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGY 60
Query: 482 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW 541
++L I G S GG L GA LN RPDLFKAAVA VP VD LT M D + P T + EW
Sbjct: 61 VDPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDTS-PFTE-RYMEW 118
Query: 542 GDPWK-EEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 600
G+PW EE Y Y+ YSP DNVKA YP +L+ GL+D RV +E K VA L+
Sbjct: 119 GNPWDNEEGYRYLSPYSPYDNVKA--YPPLLLIHGLHDDRVPPAEALKLVAALQA--KGK 174
Query: 601 NILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639
N+LL GH R + E A FL++ L
Sbjct: 175 NVLL-LIFPDEGHGGGKPRN-KREEYARELAFLLKVLGG 211
|
Length = 212 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 1e-62
Identities = 185/657 (28%), Positives = 263/657 (40%), Gaps = 90/657 (13%)
Query: 12 EDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDE 71
ED+ PF +G YY Y R ++ + +T + P +++D
Sbjct: 52 EDIPIPFERGGRYYNFWQ--DALYP----RGLYRR----TTLETYRS--AKPEWEVLIDV 99
Query: 72 N--VKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP------ 123
+ G G V PD + Y+ G + D+ETG V +
Sbjct: 100 DALSADLGDKVALGG-ASVLPDGTRLLYSLSIGGSDAGITREFDLETGEFVEEEGFKFPG 158
Query: 124 -----LVGVTASVEWAGNEALVYITMDEILRPDKAWL-HKLEADQSNDICLYHEKD-DIY 176
GV S W E T R K KL Q D+ + D D +
Sbjct: 159 ISWLDDDGVFVSRYWRPKE----KTPSGYPRVVKRLKRGKLFEGQEGDVMVNARGDQDPW 214
Query: 177 SLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD------------T 224
L SE F ++ +L S +++ P VG + T
Sbjct: 215 GFRLVLSEDGDFFMLSL---------WLGTSGKGLIKLGLPDKVGYEWGKLVNTLRADWT 265
Query: 225 AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHL-AVY 283
A ++ +DE IP E L+ + D L A
Sbjct: 266 FADVDYGLLYL--LTDEDLELG---------KVIAEFIP-EEEQSLEQVVTTKDKLVAGT 313
Query: 284 EREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRT 343
+ E VE P S + ++S T
Sbjct: 314 LDNVSGRLEVYDLKGERIEE---------VELPPPGALGMGSADKDGDEVF-LAFTSFTT 363
Query: 344 PPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLD 403
P ++Y D+ G L+ I FD +NY E+ +A++ DGT+IP IV + K D
Sbjct: 364 PSTLYRLDLFGG--ELEVIREQPVQFDADNYEVEQFFATSKDGTRIPYFIVRKG--AKKD 419
Query: 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 463
+P LLY YG + I P F+ SR L+RG +F +A IRGGGE G +W++ G K+
Sbjct: 420 -ENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQ 478
Query: 464 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVL 523
N F DFIA AE LIK + EKL I+G S GGLL+GA L RP+LF AAV VP +D
Sbjct: 479 NVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLD-- 536
Query: 524 TTMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKA-QNYPHILVTAGLNDPRV 581
ML + + W E+G+P E ++ +YSP N+K Q YP L+T L+D RV
Sbjct: 537 --MLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKPGQKYPPTLITTSLHDDRV 594
Query: 582 MYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638
+ KF AKL+E+ +L + E GH + E RE A FL+R L
Sbjct: 595 HPAHARKFAAKLQEVGAP---VLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648
|
Length = 648 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 8e-18
Identities = 113/562 (20%), Positives = 182/562 (32%), Gaps = 72/562 (12%)
Query: 89 SPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNEALVYITMDEI 147
SPD ++A+ T G + +Y++D+ + K GV A G+ + ++T +
Sbjct: 68 SPDGSVLAF-VSTDGGRVAQLYLVDVGGL--ITKTAFGVSDARWSPDGDR-IAFLTAEGA 123
Query: 148 LRPDK-------AWLHKLEADQSNDICLYH--EKDDIYSLGLQASESKKFLF-------- 190
+ D + LY + + LGL + F
Sbjct: 124 SKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVA 183
Query: 191 -IASESKITRFV--FYLDVSKPEELRVLTPRVVGVDTAA-----------SHRGNHFFIT 236
I + +V Y+ + EL LTP + A +
Sbjct: 184 SIRLDDDADPWVTNLYVLIEGNGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAE 243
Query: 237 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYR 296
L + EL D +S L D L +GG +R
Sbjct: 244 GDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDG-----DGLLFIATDGG-GSSPLFR 297
Query: 297 LPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356
+ +G ++ L G V D + YSS PP +Y YD
Sbjct: 298 VDDLGGGVEGLSGDDGG-----VPGFDVDGRKLA-----LAYSSPTEPPEIYLYDRGEEA 347
Query: 357 SVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSY 416
+ + L E ++DG I +Y+ PL++Y +G
Sbjct: 348 KLTSSNNSGLKKVKL--AEPEPVTYKSNDGETIH-GWLYKPPGFDPRKKYPLIVYIHGGP 404
Query: 417 EICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE--NGKFLKKKNTFTDFIACAE 474
+FN L G+ RG GR++ + G + D IA +
Sbjct: 405 SAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGV--DLEDLIAAVD 462
Query: 475 YLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLT 534
L+K E++ I G S GG + + FKAAVA VD L + T L
Sbjct: 463 ALVKLPLVDPERIGITGGSYGGYMTLLAA-TKTPRFKAAVAVAGGVDWLLYFGESTEGLR 521
Query: 535 TAEWEEWGDPWKEEFYFYMKSYSP---VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVA 591
E G P ++ + SP DN+K +L+ G D RV + + V
Sbjct: 522 FDPEENGGGPPEDR--EKYEDRSPIFYADNIKT----PLLLIHGEEDDRVPIEQAEQLVD 575
Query: 592 KLREMKTDDNILLFKCELGAGH 613
L+ +++F GH
Sbjct: 576 ALKRKGKPVELVVFP---DEGH 594
|
Length = 620 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 648 | |||
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 100.0 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 100.0 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 100.0 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 99.97 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 99.97 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.87 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.86 | |
| PRK10566 | 249 | esterase; Provisional | 99.85 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.85 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.83 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.83 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.81 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.8 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.8 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.79 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.79 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.79 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.78 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.78 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.78 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.78 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.78 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.77 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.76 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.76 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.76 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.75 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.75 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.75 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.74 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.74 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.73 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.73 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.73 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.73 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.72 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.7 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.68 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.67 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.66 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.66 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.66 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.65 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.65 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.63 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.62 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.62 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.62 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.62 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.61 | |
| PLN02511 | 388 | hydrolase | 99.61 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.57 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.57 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.56 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.56 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.56 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.54 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.53 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.51 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.51 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.51 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.51 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.5 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.5 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.49 | |
| PLN00021 | 313 | chlorophyllase | 99.49 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.49 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.47 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.47 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.46 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.46 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.45 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.45 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.45 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.44 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.44 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.43 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.43 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.42 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.42 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.42 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.42 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.41 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.41 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.41 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.4 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.39 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.38 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.38 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.38 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.38 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.38 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.37 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.37 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.37 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.35 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.35 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.34 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.34 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.34 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.33 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.29 | |
| PLN02578 | 354 | hydrolase | 99.29 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.28 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.28 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.25 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.22 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.18 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.18 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 99.17 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.17 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.16 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.15 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.12 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 99.11 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.11 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 99.09 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 99.04 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.02 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 99.01 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 98.94 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.93 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.93 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 98.93 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 98.92 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 98.9 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.88 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.87 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 98.85 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.81 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.81 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 98.8 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.78 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.74 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 98.73 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.72 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.68 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.66 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.66 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 98.64 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 98.62 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.62 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 98.61 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.61 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.6 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.57 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 98.54 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.51 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.51 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.51 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.51 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.5 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.49 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.48 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.45 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.44 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.44 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 98.44 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.43 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 98.42 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.4 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.4 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.39 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.38 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.38 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.37 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.36 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.34 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.34 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.32 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.31 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.31 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.26 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.23 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.23 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.22 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 98.21 | |
| PTZ00421 | 493 | coronin; Provisional | 98.19 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 98.19 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.19 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.18 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.17 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 98.17 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.16 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 98.15 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.11 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.1 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.09 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.09 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 98.08 | |
| PTZ00420 | 568 | coronin; Provisional | 98.08 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.06 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.06 | |
| PRK10115 | 686 | protease 2; Provisional | 98.05 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.04 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.04 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 98.01 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 98.01 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 98.01 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.01 | |
| PTZ00420 | 568 | coronin; Provisional | 98.0 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 97.99 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.95 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 97.94 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 97.94 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.93 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.93 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.85 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 97.83 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.83 | |
| PTZ00421 | 493 | coronin; Provisional | 97.79 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.78 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 97.7 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.69 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.68 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 97.67 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.63 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 97.62 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 97.62 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 97.6 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 97.6 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.57 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 97.55 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 97.55 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.54 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.54 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 97.53 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.47 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 97.47 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 97.46 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.46 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 97.4 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.4 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.4 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.39 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 97.38 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 97.32 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.31 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.28 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 97.28 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 97.27 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.25 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 97.24 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.2 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 97.19 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.19 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.18 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.15 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 97.14 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 97.11 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 97.11 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.1 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.1 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 97.08 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.07 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.06 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.03 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.03 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 97.01 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.01 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.01 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 97.0 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 96.98 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 96.96 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 96.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.93 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 96.92 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 96.91 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 96.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 96.88 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 96.88 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.87 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 96.86 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 96.85 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 96.84 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 96.82 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 96.81 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 96.78 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 96.78 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.73 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 96.65 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 96.64 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 96.63 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 96.61 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 96.6 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 96.59 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 96.58 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 96.56 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 96.55 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 96.53 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 96.52 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 96.45 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 96.44 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 96.44 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 96.43 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 96.42 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 96.4 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.4 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 96.39 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 96.34 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 96.29 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 96.24 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 96.2 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 96.19 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 96.15 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.15 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 95.99 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.96 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 95.95 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 95.94 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 95.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 95.92 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 95.89 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 95.89 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 95.88 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 95.85 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 95.77 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 95.73 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 95.71 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.7 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 95.62 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 95.55 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 95.51 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 95.49 | |
| PLN02209 | 437 | serine carboxypeptidase | 95.48 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 95.47 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 95.33 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.32 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 95.32 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 95.27 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.26 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 95.21 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 95.2 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 95.15 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.11 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 95.11 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 95.05 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 94.94 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 94.87 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 94.85 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 94.77 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 94.75 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 94.69 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 94.58 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 94.54 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 94.45 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 94.28 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 94.28 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 94.14 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 94.12 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 93.95 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 93.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 93.77 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 93.7 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 93.55 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 93.54 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 93.27 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 93.27 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 93.14 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 93.07 | |
| KOG2541 | 296 | consensus Palmitoyl protein thioesterase [Lipid tr | 93.06 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 93.05 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 93.01 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 93.01 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 92.85 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 92.83 | |
| PF04083 | 63 | Abhydro_lipase: Partial alpha/beta-hydrolase lipas | 92.83 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 92.82 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 92.79 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 92.77 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 92.75 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 92.7 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 92.66 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 92.61 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 92.58 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 92.56 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 92.55 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 92.4 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 92.39 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 92.37 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 92.33 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 92.29 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 91.78 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 91.76 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 91.71 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 91.37 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 91.3 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 91.28 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.27 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 91.24 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 91.13 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 91.04 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 90.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.79 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 90.78 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 90.57 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 90.4 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.32 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 90.11 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 90.04 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 89.91 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 89.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 89.71 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 89.61 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 89.43 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 89.33 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 89.28 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 89.02 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 88.98 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 88.74 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 88.66 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 88.47 | |
| COG2939 | 498 | Carboxypeptidase C (cathepsin A) [Amino acid trans | 88.46 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 88.31 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 88.23 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 88.03 | |
| PF02089 | 279 | Palm_thioest: Palmitoyl protein thioesterase; Inte | 87.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 87.9 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 87.81 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 87.69 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 87.62 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 87.51 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 87.44 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 87.24 | |
| PLN02454 | 414 | triacylglycerol lipase | 87.05 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 86.7 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 86.55 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 86.44 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 86.4 | |
| PLN02408 | 365 | phospholipase A1 | 85.76 | |
| cd00519 | 229 | Lipase_3 Lipase (class 3). Lipases are esterases t | 85.71 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 85.69 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 85.57 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 85.43 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 85.37 | |
| smart00824 | 212 | PKS_TE Thioesterase. Peptide synthetases are invol | 84.74 | |
| PF06259 | 177 | Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR | 84.57 | |
| PLN02571 | 413 | triacylglycerol lipase | 84.56 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 84.38 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 84.24 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 83.78 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 83.6 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 83.45 | |
| PLN02324 | 415 | triacylglycerol lipase | 83.41 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 83.22 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 83.04 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 82.7 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 82.43 | |
| PLN02517 | 642 | phosphatidylcholine-sterol O-acyltransferase | 82.08 | |
| PLN02802 | 509 | triacylglycerol lipase | 81.66 | |
| COG4287 | 507 | PqaA PhoPQ-activated pathogenicity-related protein | 81.47 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 81.29 | |
| PLN02606 | 306 | palmitoyl-protein thioesterase | 81.16 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 80.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 80.82 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 80.69 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 80.66 |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-110 Score=850.95 Aligned_cols=612 Identities=50% Similarity=0.888 Sum_probs=581.4
Q ss_pred CHHHHhhccCCCCCCCCeEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCc
Q 006375 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGF 80 (648)
Q Consensus 1 ~~~~~~~r~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~ 80 (648)
||+||++|+++++.|+|.++|.|+||+|...|++|+++||....++ .++|+|||+|++++++++
T Consensus 65 if~Ei~~Rik~dd~Svp~~~~~~~Yy~r~~~g~~y~~~~R~~~~g~----------------~~eevlLD~n~~A~g~~f 128 (682)
T COG1770 65 IFEEIKGRIKEDDLSVPYRKGPYEYYSRTEEGKEYPIYCRQPDEGG----------------EGEEVLLDVNKEAEGHDF 128 (682)
T ss_pred HHHHHhhhccCcCCCCccccCCeeEEEEecCCCcceeEEeccCCCC----------------CceeEeecchhccCcccc
Confidence 6899999999999999999999999999999999999999765431 258999999999999999
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
++++.+++|||+++|||+.|..|+|+++|+++|+++|+..++.+.++..+++|.+|+ ++||++.++..++.+||+|.++
T Consensus 129 ~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~g 208 (682)
T COG1770 129 FSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLG 208 (682)
T ss_pred eeeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCCCcceEEEEecC
Confidence 999999999999999999999999999999999999999998888888889999999 9999999998999999999999
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeecccceeeeEeecCCEEEEEec
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITRR 238 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~~~~~~~s~dg~~l~~~~~ 238 (648)
++.+.+++||++.++.|++++..|.+.++|++..++..++++++++.+.++ .++.+.++..+++|.+.+.|+.+|+.+|
T Consensus 209 t~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN 288 (682)
T COG1770 209 TPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSN 288 (682)
T ss_pred CCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEec
Confidence 988899999999999999999999999999999999999999999999887 6788999999999999999999999999
Q ss_pred cCCCCCcEEEEEeCCCCCccee--EecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecC
Q 006375 239 SDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFI 316 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~ 316 (648)
.++ .|++|++.++ .+....| ++++.++..+.++..+.+++++.+++++.+++++.+... ++ ...|.|+
T Consensus 289 ~~g-knf~l~~ap~-~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~-~~-------~~~i~f~ 358 (682)
T COG1770 289 ADG-KNFKLVRAPV-SADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKT-GE-------ERGIAFD 358 (682)
T ss_pred CCC-cceEEEEccC-CCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCC-Cc-------eeeEEec
Confidence 854 8999999998 5566677 899999999999999999999999999999999998864 22 2568899
Q ss_pred CCeeeee-CCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCcceEEEEEeCCCCeEEeEEEEE
Q 006375 317 DPVYSID-PSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVY 395 (648)
Q Consensus 317 ~~~~~v~-~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~i~~~l~~ 395 (648)
++.++.. +.+.+++++.++|.++|+++|.++|.||+.++++++++.++++++|+++.|.+++++++..||++||+.|++
T Consensus 359 ~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvy 438 (682)
T COG1770 359 DEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVY 438 (682)
T ss_pred chhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEE
Confidence 9888765 577889999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred eeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHH
Q 006375 396 RKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEY 475 (648)
Q Consensus 396 ~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~ 475 (648)
+++. +.+++.|++|++||+||.++.+.|+..++.|++||++.+++|+||||+.|+.|+++|+..+|+|+|+||++|+++
T Consensus 439 rkd~-~~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~ 517 (682)
T COG1770 439 RKDT-KLDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARH 517 (682)
T ss_pred eccc-CCCCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHH
Confidence 9997 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHc
Q 006375 476 LIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKS 555 (648)
Q Consensus 476 l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 555 (648)
|++++++++++|+++|+|+||+||+++++++|++|+++|+.+||+|++++|+++++|++..+|.|||+|.+++.+++|++
T Consensus 518 Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e~y~yikS 597 (682)
T COG1770 518 LVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPEYYDYIKS 597 (682)
T ss_pred HHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCCcCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 556 YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 556 ~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
||||+|++...||++|+++|.+|++|.+|++.|++++|+..+.+..+++++++|++||++.+++.+.+++.|++++|+.+
T Consensus 598 YSPYdNV~a~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~SgRf~~lee~A~eYaF~l~ 677 (682)
T COG1770 598 YSPYDNVEAQPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGASGRFQRLEEIAFEYAFLLK 677 (682)
T ss_pred cCchhccccCCCCceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCCCCchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 006375 636 ALSM 639 (648)
Q Consensus 636 ~l~~ 639 (648)
.++.
T Consensus 678 ~~~~ 681 (682)
T COG1770 678 LAGT 681 (682)
T ss_pred hccC
Confidence 8874
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-93 Score=783.73 Aligned_cols=615 Identities=40% Similarity=0.673 Sum_probs=538.3
Q ss_pred CHHHHhhccCCCCCCCCeEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCc
Q 006375 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGF 80 (648)
Q Consensus 1 ~~~~~~~r~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~ 80 (648)
|+++|++|+..+++++|.+.|+|+||.+...|++++++||+...+. +.+.+|+|||+|++++++++
T Consensus 61 l~~~~~~~~~~~~~~~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~--------------~~~~~~~llD~n~~a~~~~~ 126 (686)
T PRK10115 61 ILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQSAFSE--------------EWDEWETLLDANKRAAHSEF 126 (686)
T ss_pred HHHHHHhhcccccCCCCEEECCEEEEEEEcCCCccEEEEEecCCCC--------------CCCCCEEEEcchhhccCCCc
Confidence 5789999999999999999999999999999999999999875321 01357999999999888899
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCCC-CCCceEEEEEC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEI-LRPDKAWLHKL 158 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~-~~~~~l~~~~l 158 (648)
+.+..+.|||||++|||+.+.+|+|+++|+++|+++|+.+.+.+.++...++|++|+ +|+|++.++. .++.+||+|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 999999999999999999999999999999999999987776777765669999999 9999998653 57899999999
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeecccceeeeEeecCCEEEEEe
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITR 237 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~~~~~~~s~dg~~l~~~~ 237 (648)
+++++++.+++++.+..+.+....+.|++++++.+.+..++++++++++... +++.+.++..+..+.+.+.++.||+.+
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~t 286 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRS 286 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEE
Confidence 9998889999998877676667778899999988888888899999854322 256677777777777778889999999
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCC
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID 317 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~ 317 (648)
|. ++++++|+.+++.+++..+.++++.++..+.++.++++++++..++++..++++++++ ++.+ ..+.+++
T Consensus 287 n~-~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~--~~~~------~~l~~~~ 357 (686)
T PRK10115 287 NR-HGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRK--TREV------IGIAFDD 357 (686)
T ss_pred cC-CCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCC--CCce------EEecCCC
Confidence 97 5789999999987533334488886677799999999999999999999999999875 3322 2333333
Q ss_pred Cee-eeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCcceEEEEEeCCCCeEEeEEEEEe
Q 006375 318 PVY-SIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYR 396 (648)
Q Consensus 318 ~~~-~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~i~~~l~~~ 396 (648)
+.+ +..+.+.+++++.+++.++|+++|+++|.+|+.+++.++++... .+.+++..+.++++++++.||.+||++++++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~-~~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~ 436 (686)
T PRK10115 358 PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTE-VPGFDAANYRSEHLWITARDGVEVPVSLVYH 436 (686)
T ss_pred CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecC-CCCcCccccEEEEEEEECCCCCEEEEEEEEE
Confidence 322 22234555778889999999999999999999998855544322 2357888889999999999999999999998
Q ss_pred eCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHH
Q 006375 397 KNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYL 476 (648)
Q Consensus 397 ~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l 476 (648)
++. ..+++.|+||++||||+.+..+.|+..++.|+++||+|+++|+|||||||++|+++|...+|.++++|+++|++||
T Consensus 437 ~~~-~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~L 515 (686)
T PRK10115 437 RKH-FRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDAL 515 (686)
T ss_pred CCC-CCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHH
Confidence 875 4567789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcC
Q 006375 477 IKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSY 556 (648)
Q Consensus 477 ~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 556 (648)
++++++|++||+|+|+|+||+|++++++++|++|+|+|+.+|++|++++++++++|++..++.+||+|++++.+++|+++
T Consensus 516 v~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~ 595 (686)
T PRK10115 516 LKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSY 595 (686)
T ss_pred HHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999888888888888999999999999999999
Q ss_pred CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHh
Q 006375 557 SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 557 sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 636 (648)
||++|++++++|++||+||.+|+|||++|++||+++|++++++.+++++++++++||+...++.+.+++.|++++||.++
T Consensus 596 SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~~~~~~A~~~aFl~~~ 675 (686)
T PRK10115 596 SPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLIAL 675 (686)
T ss_pred CchhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999989999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred cCCC
Q 006375 637 LSML 640 (648)
Q Consensus 637 l~~~ 640 (648)
++..
T Consensus 676 ~~~~ 679 (686)
T PRK10115 676 AQGT 679 (686)
T ss_pred hCCc
Confidence 9874
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-91 Score=701.44 Aligned_cols=623 Identities=43% Similarity=0.696 Sum_probs=532.2
Q ss_pred CHHHHhhccCCCCCCCCeEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCc
Q 006375 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGF 80 (648)
Q Consensus 1 ~~~~~~~r~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~ 80 (648)
|+.||+.|+..+..++|.|+|.|+||.++.++++++++|||....+ +...-+.. ...+..+|+||.|+.++.+++
T Consensus 63 l~~em~~~i~ye~~~~p~r~G~~yyY~~n~~lkq~vl~~rr~~~~e--~~~~ld~~---~~~dd~tV~Ld~~~~aed~~Y 137 (712)
T KOG2237|consen 63 LFSEMTKRIDYEIITPPLRWGPWYYYFYNTGLKQYVLYCRRLLEKE--EEVFLDPN---ALGDDGTVLLDTNQIAEDFKY 137 (712)
T ss_pred HHHHhhhccCccccCCccccCCEEEEEEcCCceehhHHHHhhhhcc--cceecCCc---cCCCCceEEechhhhhhcCCc
Confidence 5789999999999999999999999999999999999999987321 11111211 112345799999999998888
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEEec-CC-eEEEEEeCCCCCCceEEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAG-NE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~Wsp-Dg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
+..+-...|||.++|||+.+..|+|.+++ |.+++..++.... .+++. ..+|.. || .|+|.+.++.+++++||+|.
T Consensus 138 ~~~gls~~spD~~~ia~~~~~~~~e~~~~-v~~~~~~~~~~~~~~~g~~-y~~w~~~dg~~l~~~t~~~~~r~hkvy~h~ 215 (712)
T KOG2237|consen 138 FAYGLSESSPDHKYIAYTKDTEGKELFTV-VIDVKFSGPVWTHDGKGVS-YLAWAKQDGEDLLYGTEDENNRPHKVYYHT 215 (712)
T ss_pred eEEeecccCCCceEEEEEEcCCCCcccee-eeeeccCCceeeccCCceE-eeeecccCCceeeeeeeccccCcceEEEEe
Confidence 88888889999999999999999999999 9999998877543 44444 499987 88 89999999999999999999
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccc---cEEEEEECCCCC-ceeE-eeecccceeee------E
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKIT---RFVFYLDVSKPE-ELRV-LTPRVVGVDTA------A 226 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~---~~l~~~dl~~~~-~~~~-l~~~~~~~~~~------~ 226 (648)
+|+.+++|.+++++.++..++...-..|+++..+.+.+.+. +.+|.+|+.... .++. +.++..+++++ +
T Consensus 216 ~Gtdq~~Dvl~~~e~d~~~~vf~~~~kD~~~~~i~si~~t~s~~~~vf~~d~~~~~~gl~~~~~~~v~~v~~f~eh~~fi 295 (712)
T KOG2237|consen 216 LGTDQSEDVLLYEEKDEPKHVFISETKDSGFYTINSISETCSPVNKVFLCDLSSPSDGLELLILPRVKGVDCFVEHYDFI 295 (712)
T ss_pred cccCCCcceEEEecCCCCeEEEEEEEecCceEEEEEeeccCCccceEEEEecccccCCcchheeeccchhhhhhhhhhhe
Confidence 99999999999999998777666777777777777765544 599999998765 3443 66676665543 4
Q ss_pred eecCCEEEEEeccCCCCCcEEEEEeCCCCCccee--EecCCCCcccceEEEeCCEEEEEEecCCeeEEE-EEEcCCCCCc
Q 006375 227 SHRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFIDHLAVYEREGGLQKIT-TYRLPAVGEP 303 (648)
Q Consensus 227 s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-v~~~~~~g~~ 303 (648)
...+..++|.+|. +++++.+.++++..+.+..| ++.+.+...+..+...++.+++.........+. +...- .|.
T Consensus 296 ~~~~t~~~~~tn~-~~p~y~l~r~~~~~~~~~~W~~v~~e~~~~vl~~~~~~~~~~ll~~~~~~l~~i~q~~~~l-~g~- 372 (712)
T KOG2237|consen 296 TNEGTEFYFLTNK-DAPNYYLLRIDVKEPEESKWETVFAEHEKDVLEDVDMVNDNLLLVCYMSDLKHILQVRDLL-DGS- 372 (712)
T ss_pred eccCcceeeeccC-CCCceeEEeeeccCccccccceeecccchhhhhhhhhhcCceEEEEEecCchhhccccccc-cCc-
Confidence 4556889999997 68999999999988766677 777777777888888887666555544443332 22221 122
Q ss_pred ccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE---EEEEEeeecCCCCCCCcceEEEE
Q 006375 304 LKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS---VLKKIETVLGGFDTNNYFTERKW 380 (648)
Q Consensus 304 ~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 380 (648)
....||.+.+++.+...+++...++|.++|+.+|+.+|.||+..++. .+..+....++++.+.|.+++++
T Consensus 373 -------~~~~fpLpv~sv~~~~g~~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~ 445 (712)
T KOG2237|consen 373 -------LLRSFPLPVGSVSGTSGDFKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIE 445 (712)
T ss_pred -------eeeeecCCCCcccccccCCCCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEE
Confidence 34556777777777777899999999999999999999999998842 22233334578999999999999
Q ss_pred EeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhccccc
Q 006375 381 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 460 (648)
Q Consensus 381 ~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 460 (648)
++|+||++||+++++.++. +.+++.|++||+||||+.+..+.|......|+++|++.+.+|+|||||+|.+||+.|+..
T Consensus 446 ~~SkDGt~VPM~Iv~kk~~-k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~la 524 (712)
T KOG2237|consen 446 VSSKDGTKVPMFIVYKKDI-KLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLA 524 (712)
T ss_pred EecCCCCccceEEEEechh-hhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchh
Confidence 9999999999999998887 788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccc
Q 006375 461 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEE 540 (648)
Q Consensus 461 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 540 (648)
+|+|.++|+++|++||++++++.|+++++.|+|+||+|++++++++|++|+|+|+.+||+||++++.++.+|++..+|++
T Consensus 525 kKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee 604 (712)
T KOG2237|consen 525 KKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEE 604 (712)
T ss_pred hhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHcCCccccCCCCC-CCeEEEeecCCCCccCCchHHHHHHHHHhcCCC----CCeEEEEecCCCCccC
Q 006375 541 WGDPWKEEFYFYMKSYSPVDNVKAQN-YPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD----DNILLFKCELGAGHFS 615 (648)
Q Consensus 541 ~g~~~~~~~~~~~~~~sp~~~~~~~~-~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~gH~~ 615 (648)
||+|.+.+.+-++++|+|++|+++.. ||.|||+++.+|+||+++++.|+.++||.+-.. .+++++++++++||+.
T Consensus 605 ~g~p~~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~ 684 (712)
T KOG2237|consen 605 WGNPEDFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGA 684 (712)
T ss_pred cCChhhhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCcccc
Confidence 99999888888888999999999886 999999999999999999999999999987433 3679999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCC
Q 006375 616 KSGRFERLREAAFTYTFLMRALSMLP 641 (648)
Q Consensus 616 ~~~~~~~~~~~~~~~~fl~~~l~~~~ 641 (648)
..++..++++.++.++||.+.++..+
T Consensus 685 ~~~~~k~~~E~a~~yaFl~K~~~~~~ 710 (712)
T KOG2237|consen 685 EKPRFKQIEEAAFRYAFLAKMLNSDW 710 (712)
T ss_pred CCchHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999988654
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-73 Score=568.55 Aligned_cols=580 Identities=29% Similarity=0.402 Sum_probs=445.8
Q ss_pred CCCCCCCeEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCC-CcEEEeeEEeC
Q 006375 11 QEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGR-GFYSVGCFQVS 89 (648)
Q Consensus 11 ~~~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~-~~~~~~~~~~S 89 (648)
.++.++|...++++|...++......++-|....+ + ....+..+||+|++++++.. ..+.+.+.+.+
T Consensus 51 ~~~~~~~~~~~~~~ynFw~D~~~p~Glwr~ttl~s---------y---rs~~p~WevLiD~d~Ls~~~g~~v~~~Gas~~ 118 (648)
T COG1505 51 YEDIPIPFERGGRYYNFWQDALYPRGLYRRTTLET---------Y---RSAKPEWEVLIDVDALSADLGDKVALGGASVL 118 (648)
T ss_pred ccccCcceeccceeEEeeccccCcceeEEeeccee---------e---cccCCCceeecCHHHHhhhcCCcEEEccceeC
Confidence 36688999999998887777655554444333221 0 11235679999999997643 37888899999
Q ss_pred CCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCC------CCC---ceEEEEECCC
Q 006375 90 PDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEI------LRP---DKAWLHKLEA 160 (648)
Q Consensus 90 PDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~------~~~---~~l~~~~l~~ 160 (648)
||+++++|+.+.+|++...++++|++||..+... .-....+.|.++++++|.+.... +.+ ..+++..+..
T Consensus 119 ~~~~R~l~s~S~gG~D~~~~re~Dlet~~fv~~~-~f~~~~~~wld~d~~~~~~~~~~~e~T~sGy~~~~~~~krg~~f~ 197 (648)
T COG1505 119 PDGTRLLYSLSIGGSDAGITREFDLETGEFVEEE-GFKFPGISWLDDDGVFVSRYWRPKEKTPSGYPRVVKRLKRGKLFE 197 (648)
T ss_pred CCCCEEEEEecCCCCcceEEEEEEecccccccCC-CccccceEEecCCCEEEecccCCcccCccCCchHhhhhhhccccc
Confidence 9999999999999999999999999999877654 22233499999887777765431 122 3455667777
Q ss_pred CCCCcEEEEeecC-CCeEEEEEeCCCCcEEEEEEccc--cccEEEEEECCCCC--ceeEee--ecccceeeeEeecCCEE
Q 006375 161 DQSNDICLYHEKD-DIYSLGLQASESKKFLFIASESK--ITRFVFYLDVSKPE--ELRVLT--PRVVGVDTAASHRGNHF 233 (648)
Q Consensus 161 ~~~~~~~~~~~~~-~~~~~~~~~s~Dg~~l~~~~~~~--~~~~l~~~dl~~~~--~~~~l~--~~~~~~~~~~s~dg~~l 233 (648)
++..+..+....+ ..+......+.|+++++....-. +...++ +++-+.. ....|. .+.+.. ....+.+.+
T Consensus 198 ~~~~dv~V~a~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-l~~p~~~~~~~~~l~~~~r~dw~--~~~~~~g~l 274 (648)
T COG1505 198 GQEGDVMVNARGDQDPWGFRLVLSEDGDFFMLSLWLGTSGKGLIK-LGLPDKVGYEWGKLVNTLRADWT--FADVDYGLL 274 (648)
T ss_pred CCCCceEEecccccCCccceEEEeeccchhhheeeEeccCCCcee-ccCCccccceeeeeeEeeccccc--ccCcccceE
Confidence 8778888876543 12223344555555544322111 111222 2221110 011110 011000 011112233
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCcee
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 313 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i 313 (648)
++.+... .. . +....++.+.+...++.+...++++++...++..+++.++... +.. .+++
T Consensus 275 ~l~~~e~-~~----------~-g~~~a~~~P~~~~~le~v~tt~~~~va~~l~nv~~~l~v~~~~--g~~------~~~v 334 (648)
T COG1505 275 YLLTDED-LE----------L-GKVIAEFIPEEEQSLEQVVTTKDKLVAGTLDNVSGRLEVYDLK--GER------IEEV 334 (648)
T ss_pred EEEehhc-cc----------c-CceeEEecCCcccceeeeEEEcCeEEeeeehhccceEEEeccC--ceE------eeec
Confidence 3333321 11 1 1111144445566799999999999999999999999998877 432 2467
Q ss_pred ecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCcceEEEEEeCCCCeEEeEEE
Q 006375 314 EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICI 393 (648)
Q Consensus 314 ~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~i~~~l 393 (648)
.+|.+. ++.....+.+++++++.++|+++|+++|+++..+++++..+ ..+..|+++.+.+++.+.+|+||++||.++
T Consensus 335 ~l~~~g-a~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik--~~p~~FDa~~~~veQ~~atSkDGT~IPYFi 411 (648)
T COG1505 335 ELPPPG-ALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIR--EQPVQFDADNYEVEQFFATSKDGTRIPYFI 411 (648)
T ss_pred ccCCcc-ceeeccCCCCCcEEEEEeecccCCCceEEEecCCceehhhh--hccCCcCccCceEEEEEEEcCCCccccEEE
Confidence 776654 45445677899999999999999999999999999865544 334589999999999999999999999999
Q ss_pred EEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHH
Q 006375 394 VYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACA 473 (648)
Q Consensus 394 ~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~ 473 (648)
++ |+. +.+ ++|++|+.||||+.+..|.|+.....|+++|.+.+++|.|||||||..||+++++.++++.++|++|++
T Consensus 412 v~-K~~-~~d-~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVa 488 (648)
T COG1505 412 VR-KGA-KKD-ENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVA 488 (648)
T ss_pred Ee-cCC-cCC-CCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHH
Confidence 98 776 566 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHH
Q 006375 474 EYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYM 553 (648)
Q Consensus 474 ~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 553 (648)
+.|++++++.|++|+|.|+|+||+|++++++|+|++|.|+||.+|++||+++. .++....+..|||+|.+|+.++.|
T Consensus 489 edLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh---~l~aG~sW~~EYG~Pd~P~d~~~l 565 (648)
T COG1505 489 EDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYH---LLTAGSSWIAEYGNPDDPEDRAFL 565 (648)
T ss_pred HHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhc---ccccchhhHhhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999986 344334444899999999999999
Q ss_pred HcCCccccCCC-CCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHH
Q 006375 554 KSYSPVDNVKA-QNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTF 632 (648)
Q Consensus 554 ~~~sp~~~~~~-~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~f 632 (648)
.+||||+|++. ++|||+||+++++|+||.|.|++||+++|++++.+ ++|.++.++||++..+..+..++.++.++|
T Consensus 566 ~~YSPy~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~p---v~~~e~t~gGH~g~~~~~~~A~~~a~~~af 642 (648)
T COG1505 566 LAYSPYHNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAP---VLLREETKGGHGGAAPTAEIARELADLLAF 642 (648)
T ss_pred HhcCchhcCCccccCCCeEEEcccccccccchHHHHHHHHHHhcCCc---eEEEeecCCcccCCCChHHHHHHHHHHHHH
Confidence 99999999999 59999999999999999999999999999999854 678888899999998888889999999999
Q ss_pred HHHhcC
Q 006375 633 LMRALS 638 (648)
Q Consensus 633 l~~~l~ 638 (648)
|.+.|+
T Consensus 643 l~r~L~ 648 (648)
T COG1505 643 LLRTLG 648 (648)
T ss_pred HHHhhC
Confidence 999885
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=396.03 Aligned_cols=522 Identities=19% Similarity=0.218 Sum_probs=347.5
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCC----CC---------
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDE----IL--------- 148 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~----~~--------- 148 (648)
...+.|||||+.+++.... +....++|+++.+ | ........ .....|+|+| .+.+..... .+
T Consensus 62 ~~~~~~spdg~~~~~~~~~-~~~~~~l~l~~~~-g-~~~~~~~~-v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (620)
T COG1506 62 VSELRWSPDGSVLAFVSTD-GGRVAQLYLVDVG-G-LITKTAFG-VSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRL 137 (620)
T ss_pred ccccccCCCCCEEEEEecc-CCCcceEEEEecC-C-ceeeeecc-cccceeCCCCCeEEEEecccccccCCceeeeeccc
Confidence 3467889999999999843 4447899999998 5 22212222 3458899999 887732211 01
Q ss_pred ---------CCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcccc----ccEEEEEECCCCCceeEe
Q 006375 149 ---------RPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI----TRFVFYLDVSKPEELRVL 215 (648)
Q Consensus 149 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~----~~~l~~~dl~~~~~~~~l 215 (648)
+..++|..+.++ ...... ....-...+.+..+++.++....... ....++....++. ...+
T Consensus 138 ~~~~~~~g~~~~~l~~~d~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 211 (620)
T COG1506 138 PVWFDGRGGERSDLYVVDIES----KLIKLG-LGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE-LESL 211 (620)
T ss_pred ceeecCCCCcccceEEEccCc----cccccc-CCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc-eEEE
Confidence 122233333222 000000 01112234556666666665443332 1334444334444 5555
Q ss_pred eecccc-eeeeEeecCCEEEEEeccCC---CCCcEEEEEeCCCCCcceeEecCCC---CcccceEEEeCCEEEEEEec-C
Q 006375 216 TPRVVG-VDTAASHRGNHFFITRRSDE---LFNSELLACPVDNTSETTVLIPHRE---SVKLQDIQLFIDHLAVYERE-G 287 (648)
Q Consensus 216 ~~~~~~-~~~~~s~dg~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~-~ 287 (648)
++.... ....++++|+.+++..+... .....++..+.+. ........... ..........++.+++.... .
T Consensus 212 ~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (620)
T COG1506 212 TPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGEL-GEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGG 290 (620)
T ss_pred cCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccc-cccceeeccCCcccCcHHhccccCCCcEEEEEecCC
Confidence 554333 23458899998888877533 2334555555221 11110111110 00011111344566656555 3
Q ss_pred CeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEEEEEEeeecC
Q 006375 288 GLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLG 367 (648)
Q Consensus 288 ~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~ 367 (648)
+... ++.+...+.. ..+. ..+...+.++. .+++.+++.++++.+|+++|.++. ..+.++... ...
T Consensus 291 g~~~--l~~~~~~~~~-------~~~~-~~~~~~v~~f~--~~~~~~~~~~s~~~~p~~i~~~~~-~~~~~~~~~--~~~ 355 (620)
T COG1506 291 GSSP--LFRVDDLGGG-------VEGL-SGDDGGVPGFD--VDGRKLALAYSSPTEPPEIYLYDR-GEEAKLTSS--NNS 355 (620)
T ss_pred CceE--EEEEeccCCc-------eeee-cCCCceEEEEe--eCCCEEEEEecCCCCccceEEEcC-CCceEEeec--ccc
Confidence 3333 3333211111 1111 11112343333 388899999999999999999987 333222211 111
Q ss_pred CCC-CCCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCC
Q 006375 368 GFD-TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGG 446 (648)
Q Consensus 368 ~~~-~~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~ 446 (648)
... ......+.+++++.||.+|+++++.|++. ++.+++|+||++|||+.......|....+.|+++||+|+.+|+||+
T Consensus 356 ~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~-~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS 434 (620)
T COG1506 356 GLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGF-DPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGS 434 (620)
T ss_pred cccccccCCceEEEEEcCCCCEEEEEEecCCCC-CCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCC
Confidence 121 22346799999999999999999999987 7777799999999999888888899999999999999999999999
Q ss_pred CCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc
Q 006375 447 GELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM 526 (648)
Q Consensus 447 g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~ 526 (648)
+|||++|.++..+.++...++|+.+++++|.+.+.+|++||+|+|+|+||+|+++++++.| +|+|+++..+.+|.+.++
T Consensus 435 ~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~ 513 (620)
T COG1506 435 TGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYF 513 (620)
T ss_pred CccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999887 899999999988877766
Q ss_pred cCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEE
Q 006375 527 LDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 606 (648)
Q Consensus 527 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 606 (648)
...+..+........+.+.. ..+.+.+.||+.++.++++| +||+||++|.+||+.|+++|+++|+..|+++++++|+
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sp~~~~~~i~~P-~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p 590 (620)
T COG1506 514 GESTEGLRFDPEENGGGPPE--DREKYEDRSPIFYADNIKTP-LLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFP 590 (620)
T ss_pred cccchhhcCCHHHhCCCccc--ChHHHHhcChhhhhcccCCC-EEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeC
Confidence 54343332211111223321 22345789999999999999 9999999999999999999999999999999999998
Q ss_pred ecCCCCccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 607 CELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 607 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
+++|..... ......+..+++|+.++|+.
T Consensus 591 ---~e~H~~~~~-~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 591 ---DEGHGFSRP-ENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred ---CCCcCCCCc-hhHHHHHHHHHHHHHHHhcC
Confidence 678876542 22334455678999999874
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=358.89 Aligned_cols=338 Identities=35% Similarity=0.611 Sum_probs=273.6
Q ss_pred CHHHHhhccCCCCCCCCeEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCc
Q 006375 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGF 80 (648)
Q Consensus 1 ~~~~~~~r~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~ 80 (648)
|+++|++++..++.++|.+.|+|+||.++.++++++++||+..... +...+|+|||+|+++.++++
T Consensus 58 l~~~~~~~~~~~~~~~p~~~g~~~y~~~~~~~~~~~~~~r~~~~~~--------------~~~~~evllD~n~l~~~~~~ 123 (414)
T PF02897_consen 58 LYEELKARINEDRESVPVRRGGYYYYSRNQGGKNYPVLYRRKTDEE--------------DGPEEEVLLDPNELAKDGGY 123 (414)
T ss_dssp HHHHHHHHCSSSEE---EEETTEEEEEEE-SS-SS-EEEEEETTS---------------TS-C-EEEEEGGGGSTTSS-
T ss_pred HHHHHHhhccCCCccccEEECCeEEEEEEcCCCceEEEEEEecccC--------------CCCceEEEEcchHhhccCce
Confidence 4688899988899999999999999999999999999999997520 01235999999999986668
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccce-eEEecCC-eEEEEEeCCCCC------Cce
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTAS-VEWAGNE-ALVYITMDEILR------PDK 152 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~-~~WspDg-~l~y~~~~~~~~------~~~ 152 (648)
+.++.+.+||||++|||+.+.+|+|+++|+|+|+++|+.+.+.+.+.... ++|++|| .|+|++.+...+ +.+
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 88889999999999999999999999999999999999888777766443 9999999 999999987666 899
Q ss_pred EEEEECCCCCCCcEEEEeecCCCe-EEEEEeCCCCcEEEEEEccccc-cEEEEEECCCC---C-ceeEeeecccceeeeE
Q 006375 153 AWLHKLEADQSNDICLYHEKDDIY-SLGLQASESKKFLFIASESKIT-RFVFYLDVSKP---E-ELRVLTPRVVGVDTAA 226 (648)
Q Consensus 153 l~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~s~Dg~~l~~~~~~~~~-~~l~~~dl~~~---~-~~~~l~~~~~~~~~~~ 226 (648)
||+|.++++++++++||++.+..+ ++++.+|+||++|++.+.+... +++|++|+..+ . .++++.++..+..+.+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 999999999888899999988777 8899999999999999988887 99999999985 2 4888888888888888
Q ss_pred eecCCEEEEEeccCCCCCcEEEEEeCCCCCccee---EecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCc
Q 006375 227 SHRGNHFFITRRSDELFNSELLACPVDNTSETTV---LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEP 303 (648)
Q Consensus 227 s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~ 303 (648)
.+.|+.+|+.+|. ++++++|++++++.+....| ++++.++..+.++..++++|++..++++.++|.+++++. +..
T Consensus 284 ~~~~~~~yi~Tn~-~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~-~~~ 361 (414)
T PF02897_consen 284 DHHGDRLYILTND-DAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDD-GKE 361 (414)
T ss_dssp EEETTEEEEEE-T-T-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEE
T ss_pred EccCCEEEEeeCC-CCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCC-CcE
Confidence 8889999999996 78999999999988664333 777777778999999999999999999999999999881 221
Q ss_pred ccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEEEEE
Q 006375 304 LKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKK 361 (648)
Q Consensus 304 ~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~ 361 (648)
...+.+|.. +++.+.+.+++++.++|.++|+++|+++|.||+.++++++++
T Consensus 362 ------~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 362 ------SREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ------EEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred ------EeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 135556553 356667788999999999999999999999999999976655
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=264.48 Aligned_cols=211 Identities=33% Similarity=0.480 Sum_probs=169.7
Q ss_pred CCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHH
Q 006375 422 PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGA 501 (648)
Q Consensus 422 ~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~ 501 (648)
|+|+...+.|+++||+|+.+|+||++++|.+|+..+....+...++|+.+++++|++++.+|++||+|+|+|+||++++.
T Consensus 1 ~~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~ 80 (213)
T PF00326_consen 1 PSFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALL 80 (213)
T ss_dssp ---SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHH
T ss_pred CeeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccch
Confidence 45777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCC-CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCc
Q 006375 502 VLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPR 580 (648)
Q Consensus 502 ~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~ 580 (648)
++.++|++|+|+|+.+|++|+......... +...++.+++.+ ..++.+..+..++++.++. ++.| +||+||++|++
T Consensus 81 ~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~P-~li~hG~~D~~ 157 (213)
T PF00326_consen 81 AATQHPDRFKAAVAGAGVSDLFSYYGTTDI-YTKAEYLEYGDPWDNPEFYRELSPISPADNVQ-IKPP-VLIIHGENDPR 157 (213)
T ss_dssp HHHHTCCGSSEEEEESE-SSTTCSBHHTCC-HHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCG-GGSE-EEEEEETTBSS
T ss_pred hhcccceeeeeeeccceecchhcccccccc-cccccccccCccchhhhhhhhhcccccccccc-CCCC-EEEEccCCCCc
Confidence 999999999999999999998876543222 222244667777 4566665555455554432 4555 99999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 581 VMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 581 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
||+.++.+++++|++++++.++++++ ++||......... +....+++||.++|+.
T Consensus 158 Vp~~~s~~~~~~L~~~g~~~~~~~~p---~~gH~~~~~~~~~-~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 158 VPPSQSLRLYNALRKAGKPVELLIFP---GEGHGFGNPENRR-DWYERILDFFDKYLKK 212 (213)
T ss_dssp STTHHHHHHHHHHHHTTSSEEEEEET---T-SSSTTSHHHHH-HHHHHHHHHHHHHTT-
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEEcC---cCCCCCCCchhHH-HHHHHHHHHHHHHcCC
Confidence 99999999999999999998888886 8899665544433 5566889999999975
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-28 Score=265.77 Aligned_cols=342 Identities=18% Similarity=0.177 Sum_probs=234.5
Q ss_pred eCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEE-EECCC
Q 006375 276 FIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYD-YDMDM 354 (648)
Q Consensus 276 ~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~-~d~~~ 354 (648)
+.+.+++........+-.++.++........++-. .. ...+.+.++..+.....+....+.+..|...+. .+...
T Consensus 398 ~~~~i~f~~~~~~~~~~~ly~i~~~~~~~~~lt~~-~~---~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~ 473 (755)
T KOG2100|consen 398 DSNRIYFDAYEEDPSERHLYSISLGSGTVESLTCS-LI---TGPCTYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKN 473 (755)
T ss_pred CCceEEEEecCCCCCceEEEEEEcccccccccccc-CC---CCcceEEEEecCCcccEEEEEccCCCCCcceeecccccc
Confidence 33566666666544444444444323322222211 11 111223334555566677778888877754221 11111
Q ss_pred CcEEEEEEeee------cCCCCCCCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC-CCchh
Q 006375 355 GISVLKKIETV------LGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNSS 427 (648)
Q Consensus 355 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~ 427 (648)
.+ +...+... ...+..+....+.+.+ +|....+.++.|++. ...++.|+||.+|||+++..-. .|...
T Consensus 474 ~~-~~~~Le~n~~~~~~~~~~~~p~~~~~~i~~---~~~~~~~~~~lP~~~-~~~~kyPllv~~yGGP~sq~v~~~~~~~ 548 (755)
T KOG2100|consen 474 SK-TIVVLETNEELKKTIENVALPIVEFGKIEI---DGITANAILILPPNF-DPSKKYPLLVVVYGGPGSQSVTSKFSVD 548 (755)
T ss_pred ce-EEEEeccChhhHHHhhcccCCcceeEEEEe---ccEEEEEEEecCCCC-CCCCCCCEEEEecCCCCcceeeeeEEec
Confidence 11 12222111 1112222223344444 888899999999998 7788999999999999854322 23322
Q ss_pred --HHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh
Q 006375 428 --RLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 428 --~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 505 (648)
...+..+|++|+.+|+||+|++|.++..+..+..+...++|.+.+++++.+++++|++||+|+|+|+||++++.++..
T Consensus 549 ~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~ 628 (755)
T KOG2100|consen 549 WNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLES 628 (755)
T ss_pred HHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhh
Confidence 345667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CceeEEEecCCcccccccccCCCCCCCccccccc-CCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCC
Q 006375 506 RP-DLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMY 583 (648)
Q Consensus 506 ~p-~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~ 583 (648)
.| +.|+|+|+.+|++|+. +. +.. .-++| |.|...... +...++..++..++.|..|++||+.|++|++
T Consensus 629 ~~~~~fkcgvavaPVtd~~-~y-ds~------~terymg~p~~~~~~--y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~ 698 (755)
T KOG2100|consen 629 DPGDVFKCGVAVAPVTDWL-YY-DST------YTERYMGLPSENDKG--YEESSVSSPANNIKTPKLLLIHGTEDDNVHF 698 (755)
T ss_pred CcCceEEEEEEecceeeee-ee-ccc------ccHhhcCCCccccch--hhhccccchhhhhccCCEEEEEcCCcCCcCH
Confidence 87 7899999999999987 33 111 11344 666432211 2456777777777777679999999999999
Q ss_pred chHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCC
Q 006375 584 SEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 584 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
.|+.+++++|+.+|++.++++|+ ++.|+....... ......+..||..+++..
T Consensus 699 q~s~~~~~aL~~~gv~~~~~vyp---de~H~is~~~~~-~~~~~~~~~~~~~~~~~~ 751 (755)
T KOG2100|consen 699 QQSAILIKALQNAGVPFRLLVYP---DENHGISYVEVI-SHLYEKLDRFLRDCFGSP 751 (755)
T ss_pred HHHHHHHHHHHHCCCceEEEEeC---CCCcccccccch-HHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999998 678976543311 122335678999877753
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=245.98 Aligned_cols=329 Identities=20% Similarity=0.244 Sum_probs=239.3
Q ss_pred EEEEEecCCe--eEEEEEEcCCCCCcccccCCCceeecCCCeeeee-CCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 280 LAVYEREGGL--QKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSID-PSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 280 l~~~~~~~~~--~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~-~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+++....++. ..|++..+...|. ... +.+++++-. .++.+.+ .+..-++|-..|+.+..|.+.+++
T Consensus 518 VYf~gt~d~PlE~hLyvvsye~~g~-~~r--------lt~~g~sh~~~l~~~~d--~fv~~~~sv~sP~cv~~y~ls~~~ 586 (867)
T KOG2281|consen 518 VYFVGTKDTPLEHHLYVVSYENPGE-IAR--------LTEPGYSHSCELDQQCD--HFVSYYSSVGSPPCVSLYSLSWPE 586 (867)
T ss_pred EEEEccCCCCceeeEEEEEEecCCc-eee--------ccCCCcccchhhhhhhh--hHhhhhhcCCCCceEEEEeccCCc
Confidence 3444445542 3677777663333 222 233343321 1222233 367778889999999888887765
Q ss_pred EEEE-EEee---e--cCCCCCCCcce-EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCC-CCCchh-
Q 006375 357 SVLK-KIET---V--LGGFDTNNYFT-ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSS- 427 (648)
Q Consensus 357 ~~~~-~~~~---~--~~~~~~~~~~~-~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~- 427 (648)
-..+ +... . .+.-.+++|+. +.+.+.+..|..+.+.++.|.++ ++.+|+|+++++|||++.+.- .+|...
T Consensus 587 ~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~-~pgkkYptvl~VYGGP~VQlVnnsfkgi~ 665 (867)
T KOG2281|consen 587 NDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNF-QPGKKYPTVLNVYGGPGVQLVNNSFKGIQ 665 (867)
T ss_pred cCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccC-CCCCCCceEEEEcCCCceEEeecccccee
Confidence 2111 1110 0 12234556654 77888888899999998888887 888999999999999988643 445432
Q ss_pred ---HHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc-CCCCCCeEEEEeeChhHHHHHHHH
Q 006375 428 ---RLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN-CYCTKEKLCIEGRSAGGLLIGAVL 503 (648)
Q Consensus 428 ---~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~ 503 (648)
...|+++||+|+++|-||+--.|.+|........++-.++|.+.++++|.++ |++|++||+|-|+|+||+|++.++
T Consensus 666 ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L 745 (867)
T KOG2281|consen 666 YLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGL 745 (867)
T ss_pred hhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHh
Confidence 3588899999999999999999999988888888888999999999999988 599999999999999999999999
Q ss_pred hhCCCceeEEEecCCcccccccccCCCCCCCccccccc-CCCC-CHHHHHHHHcCCccccCCCC-CCC-eEEEeecCCCC
Q 006375 504 NMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW-GDPW-KEEFYFYMKSYSPVDNVKAQ-NYP-HILVTAGLNDP 579 (648)
Q Consensus 504 ~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~sp~~~~~~~-~~P-~~li~~g~~D~ 579 (648)
+++|+.|+++|+.+|++++.-+- + .++ +.| |-|. ++..+ .+-|-..++.+. +-| .+|++||.-|.
T Consensus 746 ~~~P~IfrvAIAGapVT~W~~YD---T-gYT----ERYMg~P~~nE~gY---~agSV~~~VeklpdepnRLlLvHGliDE 814 (867)
T KOG2281|consen 746 AQYPNIFRVAIAGAPVTDWRLYD---T-GYT----ERYMGYPDNNEHGY---GAGSVAGHVEKLPDEPNRLLLVHGLIDE 814 (867)
T ss_pred hcCcceeeEEeccCcceeeeeec---c-cch----hhhcCCCccchhcc---cchhHHHHHhhCCCCCceEEEEeccccc
Confidence 99999999999999999986442 1 111 223 6773 44333 344555666655 334 49999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 580 RVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 580 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
.|...|...++.+|.++|++.++.+|+ +.-|........ ..-.+.++.||.+
T Consensus 815 NVHF~Hts~Lvs~lvkagKpyeL~IfP---~ERHsiR~~es~-~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 815 NVHFAHTSRLVSALVKAGKPYELQIFP---NERHSIRNPESG-IYYEARLLHFLQE 866 (867)
T ss_pred chhhhhHHHHHHHHHhCCCceEEEEcc---ccccccCCCccc-hhHHHHHHHHHhh
Confidence 999999999999999999999999998 558865433222 2223467888865
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=189.08 Aligned_cols=226 Identities=16% Similarity=0.130 Sum_probs=154.8
Q ss_pred cceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCC-CCCChh
Q 006375 374 YFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGG-GELGRQ 452 (648)
Q Consensus 374 ~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~-g~~g~~ 452 (648)
+.+....+.+.||.+|.+|+..|++. ...+.|+||++||- +... ..|...+..|+++||+|+.+|.||+ |+.+.+
T Consensus 7 ~~~~~~~~~~~dG~~L~Gwl~~P~~~--~~~~~~~vIi~HGf-~~~~-~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~ 82 (307)
T PRK13604 7 FKTIDHVICLENGQSIRVWETLPKEN--SPKKNNTILIASGF-ARRM-DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGT 82 (307)
T ss_pred ccchhheEEcCCCCEEEEEEEcCccc--CCCCCCEEEEeCCC-CCCh-HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCc
Confidence 34455567788999999998888753 24567899999993 3332 2366677899999999999999987 777666
Q ss_pred hhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCC---
Q 006375 453 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP--- 529 (648)
Q Consensus 453 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~--- 529 (648)
+...... ....|+.++++|+.+++ ..+|++.|+||||.++..+|+.. .++++|+.+|+.++.......
T Consensus 83 ~~~~t~s----~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~d~l~~~~~~ 153 (307)
T PRK13604 83 IDEFTMS----IGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLRDTLERALGY 153 (307)
T ss_pred cccCccc----ccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHHHHHHHhhhc
Confidence 6432221 13689999999998863 46899999999999987766643 389999999999855332110
Q ss_pred ---CCCCCcc-ccccc-CCCC-CHHHHHHHHc------CCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcC
Q 006375 530 ---TIPLTTA-EWEEW-GDPW-KEEFYFYMKS------YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMK 597 (648)
Q Consensus 530 ---~~~~~~~-~~~~~-g~~~-~~~~~~~~~~------~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~ 597 (648)
.+|.... ....+ |.+- .....+...+ .+|.+.+++++.| +|++||++|+.||+.++++++++++.
T Consensus 154 ~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~P-vLiIHG~~D~lVp~~~s~~l~e~~~s-- 230 (307)
T PRK13604 154 DYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIP-FIAFTANNDSWVKQSEVIDLLDSIRS-- 230 (307)
T ss_pred ccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCC-EEEEEcCCCCccCHHHHHHHHHHhcc--
Confidence 0111000 00001 1111 1112222212 3455777777888 99999999999999999999998764
Q ss_pred CCCCeEEEEecCCCCccCCCc
Q 006375 598 TDDNILLFKCELGAGHFSKSG 618 (648)
Q Consensus 598 ~~~~~~~~~~~~~~gH~~~~~ 618 (648)
.+++++.++ +++|....+
T Consensus 231 ~~kkl~~i~---Ga~H~l~~~ 248 (307)
T PRK13604 231 EQCKLYSLI---GSSHDLGEN 248 (307)
T ss_pred CCcEEEEeC---CCccccCcc
Confidence 345566665 999976544
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=174.08 Aligned_cols=248 Identities=21% Similarity=0.253 Sum_probs=177.5
Q ss_pred CCCCCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCC
Q 006375 369 FDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGE 448 (648)
Q Consensus 369 ~~~~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~ 448 (648)
+..+..++-++++++.+|.+|.+|++.|+.. .++.|+||..||-.+... +-..+..|+..||+|+.+|+||.|+
T Consensus 49 ~~~~~ve~ydvTf~g~~g~rI~gwlvlP~~~---~~~~P~vV~fhGY~g~~g---~~~~~l~wa~~Gyavf~MdvRGQg~ 122 (321)
T COG3458 49 FTLPRVEVYDVTFTGYGGARIKGWLVLPRHE---KGKLPAVVQFHGYGGRGG---EWHDMLHWAVAGYAVFVMDVRGQGS 122 (321)
T ss_pred ccCCceEEEEEEEeccCCceEEEEEEeeccc---CCccceEEEEeeccCCCC---CccccccccccceeEEEEecccCCC
Confidence 3445667888999999999999999999864 488999999999333322 2234678888999999999999887
Q ss_pred CChh------------hhhcccccCCC-----CcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCcee
Q 006375 449 LGRQ------------WYENGKFLKKK-----NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 511 (648)
Q Consensus 449 ~g~~------------~~~~~~~~~~~-----~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~ 511 (648)
+..+ |+..|..+.+. ..+.|...+++-+.....+|++||++.|+|.||.|++++++..| +++
T Consensus 123 ~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik 201 (321)
T COG3458 123 SSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIK 201 (321)
T ss_pred ccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhh
Confidence 6331 22222223222 47899999999999999999999999999999999999999876 799
Q ss_pred EEEecCCcccccccccCCCCCCCcccccc------cCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCch
Q 006375 512 AAVAAVPFVDVLTTMLDPTIPLTTAEWEE------WGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSE 585 (648)
Q Consensus 512 a~v~~~~~~d~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~ 585 (648)
++++.+|++.=...... + .+...|.| .-.|.+.+.++.+.-++-.+-+.+++.| +|+..|..|++|||+-
T Consensus 202 ~~~~~~Pfl~df~r~i~--~-~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~p-vL~svgL~D~vcpPst 277 (321)
T COG3458 202 AVVADYPFLSDFPRAIE--L-ATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVP-VLMSVGLMDPVCPPST 277 (321)
T ss_pred cccccccccccchhhee--e-cccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccc-eEEeecccCCCCCChh
Confidence 99999998753332221 1 11112211 1234466777777766777777788998 9999999999999999
Q ss_pred HHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 586 PAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 586 ~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
...+++++...+ ..-+|+. -+|........ ..++.|+....+
T Consensus 278 qFA~yN~l~~~K---~i~iy~~---~aHe~~p~~~~-----~~~~~~l~~l~~ 319 (321)
T COG3458 278 QFAAYNALTTSK---TIEIYPY---FAHEGGPGFQS-----RQQVHFLKILFG 319 (321)
T ss_pred hHHHhhcccCCc---eEEEeec---cccccCcchhH-----HHHHHHHHhhcc
Confidence 888898886432 3334542 35855433211 134567766554
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-20 Score=182.06 Aligned_cols=233 Identities=16% Similarity=0.148 Sum_probs=146.5
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhccccc---CCCCc
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL---KKKNT 465 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~---~~~~~ 465 (648)
++...+.|+.. .+++.|+||++||..+.. ..|...+..|+++||.|+++|+||+|............. .-...
T Consensus 12 ~~~~~~~p~~~--~~~~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~ 87 (249)
T PRK10566 12 IEVLHAFPAGQ--RDTPLPTVFFYHGFTSSK--LVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQN 87 (249)
T ss_pred cceEEEcCCCC--CCCCCCEEEEeCCCCccc--chHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHH
Confidence 44555666542 235689999999965443 235666788899999999999999774210000000000 00134
Q ss_pred HhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEe-cCCcccccccccCCCCCCCcccccccCCC
Q 006375 466 FTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA-AVPFVDVLTTMLDPTIPLTTAEWEEWGDP 544 (648)
Q Consensus 466 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~-~~~~~d~~~~~~~~~~~~~~~~~~~~g~~ 544 (648)
.+|+.++++++.+++.+|+++|+++|+|+||++++.++.++|+..++++. ..+..+.......+.... . ......
T Consensus 88 ~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~ 163 (249)
T PRK10566 88 MQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFTSLARTLFPPLIP---E-TAAQQA 163 (249)
T ss_pred HHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHHHHHHHhcccccc---c-ccccHH
Confidence 68888999999998889999999999999999999999988874433332 233222111000000000 0 000000
Q ss_pred CCHHHHHHHHcCCccccCCCC-CCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHH
Q 006375 545 WKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERL 623 (648)
Q Consensus 545 ~~~~~~~~~~~~sp~~~~~~~-~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~ 623 (648)
...+....+..+++...+.++ .+| +|++||++|..||+.++++++++++.++.+.+.. +...+++||... .
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~i~~~P-~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~-~~~~~~~~H~~~---~--- 235 (249)
T PRK10566 164 EFNNIVAPLAEWEVTHQLEQLADRP-LLLWHGLADDVVPAAESLRLQQALRERGLDKNLT-CLWEPGVRHRIT---P--- 235 (249)
T ss_pred HHHHHHHHHhhcChhhhhhhcCCCC-EEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceE-EEecCCCCCccC---H---
Confidence 011122233455666666665 677 9999999999999999999999999988764322 222348899753 1
Q ss_pred HHHHHHHHHHHHhc
Q 006375 624 REAAFTYTFLMRAL 637 (648)
Q Consensus 624 ~~~~~~~~fl~~~l 637 (648)
.....+.+||.++|
T Consensus 236 ~~~~~~~~fl~~~~ 249 (249)
T PRK10566 236 EALDAGVAFFRQHL 249 (249)
T ss_pred HHHHHHHHHHHhhC
Confidence 23456789999875
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=187.32 Aligned_cols=260 Identities=12% Similarity=0.089 Sum_probs=164.6
Q ss_pred CCCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCC
Q 006375 371 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG 450 (648)
Q Consensus 371 ~~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g 450 (648)
+.++..+..++++.||.+|.+....|.+. ..+.|+||++||.... ....+......|+++||.|+++|+||+|...
T Consensus 27 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~---~~~~~~VvllHG~~~~-~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~ 102 (330)
T PLN02298 27 LKGIKGSKSFFTSPRGLSLFTRSWLPSSS---SPPRALIFMVHGYGND-ISWTFQSTAIFLAQMGFACFALDLEGHGRSE 102 (330)
T ss_pred ccCCccccceEEcCCCCEEEEEEEecCCC---CCCceEEEEEcCCCCC-cceehhHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 44555666778889999999876655432 1346899999996432 2334455556788899999999999998654
Q ss_pred hhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccC--
Q 006375 451 RQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD-- 528 (648)
Q Consensus 451 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~-- 528 (648)
.. .+....-....+|+.+++++|......+..++.++|+||||.+++.++.++|++++++|+.+|+.++...+..
T Consensus 103 ~~---~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 179 (330)
T PLN02298 103 GL---RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPPW 179 (330)
T ss_pred Cc---cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCch
Confidence 21 0100111234688999999998754344467999999999999999999999999999999987653221100
Q ss_pred ----------CCCCCCc-ccccc-cCC-CCCHHHHHHHHcCC----------------------ccccCCCCCCCeEEEe
Q 006375 529 ----------PTIPLTT-AEWEE-WGD-PWKEEFYFYMKSYS----------------------PVDNVKAQNYPHILVT 573 (648)
Q Consensus 529 ----------~~~~~~~-~~~~~-~g~-~~~~~~~~~~~~~s----------------------p~~~~~~~~~P~~li~ 573 (648)
...+... ..... ... ...+. ...+...+ ...++.++++| +||+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vLii 257 (330)
T PLN02298 180 PIPQILTFVARFLPTLAIVPTADLLEKSVKVPA-KKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIP-FIVL 257 (330)
T ss_pred HHHHHHHHHHHHCCCCccccCCCcccccccCHH-HHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCC-EEEE
Confidence 0000000 00000 000 00000 00000001 11335567888 9999
Q ss_pred ecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHH-HHH-HHHHHHHHHHhcCCCCCCC
Q 006375 574 AGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFER-LRE-AAFTYTFLMRALSMLPSVG 644 (648)
Q Consensus 574 ~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~-~~~-~~~~~~fl~~~l~~~~~~~ 644 (648)
||++|..||+.+++++++++... ..++++++ +++|.......+. .+. ...+.+||.++++....|+
T Consensus 258 ~G~~D~ivp~~~~~~l~~~i~~~--~~~l~~~~---~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~~~~~~ 325 (330)
T PLN02298 258 HGSADVVTDPDVSRALYEEAKSE--DKTIKIYD---GMMHSLLFGEPDENIEIVRRDILSWLNERCTGKATPS 325 (330)
T ss_pred ecCCCCCCCHHHHHHHHHHhccC--CceEEEcC---CcEeeeecCCCHHHHHHHHHHHHHHHHHhccCCCCCc
Confidence 99999999999999998887643 34555664 8899765433322 222 3357899999998665554
|
|
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=186.49 Aligned_cols=240 Identities=17% Similarity=0.130 Sum_probs=155.8
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChh
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 452 (648)
.+..+.+.++..+|..|++++..|+. +++.|+||+.|| .+......|......|+++||+|+++|+||.|+...
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~----~~~~P~Vli~gG-~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~- 238 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG----DGPFPTVLVCGG-LDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSK- 238 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC----CCCccEEEEeCC-cccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCC-
Confidence 34578999999899889999888863 256788876555 444333335555678899999999999999876532
Q ss_pred hhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc--CCC
Q 006375 453 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML--DPT 530 (648)
Q Consensus 453 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~--~~~ 530 (648)
+. . .........+++++|.....+|++||+++|+|+||++++.++..+|++++++|+..|+++.+.... ...
T Consensus 239 ~~-----~-~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~ 312 (414)
T PRK05077 239 WK-----L-TQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQ 312 (414)
T ss_pred CC-----c-cccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhh
Confidence 11 0 111122335788999998889999999999999999999999988999999999998875221110 001
Q ss_pred CCCCccc-c-cccCCC-CC-HHHHHHHHcCCccc--c-CCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeE
Q 006375 531 IPLTTAE-W-EEWGDP-WK-EEFYFYMKSYSPVD--N-VKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 603 (648)
Q Consensus 531 ~~~~~~~-~-~~~g~~-~~-~~~~~~~~~~sp~~--~-~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 603 (648)
.|..... + ...|.+ .+ ......+..++... . .+++++| +|++||++|++||+.+++.+.+... ..+++
T Consensus 313 ~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~P-vLiI~G~~D~ivP~~~a~~l~~~~~----~~~l~ 387 (414)
T PRK05077 313 VPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTP-MLSGYWKNDPFSPEEDSRLIASSSA----DGKLL 387 (414)
T ss_pred chHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCc-EEEEecCCCCCCCHHHHHHHHHhCC----CCeEE
Confidence 1110000 1 112332 22 22233344444221 1 2457888 9999999999999999987765443 34566
Q ss_pred EEEecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 604 LFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 604 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
+++ ++.|. ..... .+..+.+||.++|
T Consensus 388 ~i~---~~~~~---e~~~~--~~~~i~~wL~~~l 413 (414)
T PRK05077 388 EIP---FKPVY---RNFDK--ALQEISDWLEDRL 413 (414)
T ss_pred Ecc---CCCcc---CCHHH--HHHHHHHHHHHHh
Confidence 666 43222 12221 2335689999886
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-20 Score=184.83 Aligned_cols=246 Identities=20% Similarity=0.256 Sum_probs=161.0
Q ss_pred CCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCCh
Q 006375 372 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 372 ~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 451 (648)
+...+..+.+.+.+|.+|.++++.|++. .++.|+||.+||..+.... -.....|+.+||+|+.+|.||.|+...
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~~---~~~~Pavv~~hGyg~~~~~---~~~~~~~a~~G~~vl~~d~rGqg~~~~ 125 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKNA---KGKLPAVVQFHGYGGRSGD---PFDLLPWAAAGYAVLAMDVRGQGGRSP 125 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-S---SSSEEEEEEE--TT--GGG---HHHHHHHHHTT-EEEEE--TTTSSSS-
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCCC---CCCcCEEEEecCCCCCCCC---cccccccccCCeEEEEecCCCCCCCCC
Confidence 4567788999999999999999999854 4789999999994433211 122356889999999999999985443
Q ss_pred hhhh-----------cccccCCC-----CcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEe
Q 006375 452 QWYE-----------NGKFLKKK-----NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 515 (648)
Q Consensus 452 ~~~~-----------~~~~~~~~-----~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~ 515 (648)
+... .|....+. ..+.|...++++|.+...+|++||+++|.|.||.+++++++-.| +++++++
T Consensus 126 d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~ 204 (320)
T PF05448_consen 126 DYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAA 204 (320)
T ss_dssp B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEE
T ss_pred CccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEe
Confidence 3221 11111122 25689999999999999999999999999999999999999876 5999999
Q ss_pred cCCcc-ccccccc-CC-CCCCCc-ccccccCCC---CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHH
Q 006375 516 AVPFV-DVLTTML-DP-TIPLTT-AEWEEWGDP---WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAK 588 (648)
Q Consensus 516 ~~~~~-d~~~~~~-~~-~~~~~~-~~~~~~g~~---~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~ 588 (648)
.+|++ |....+. .. ..++.. ..|-.+.++ ..++.++.+.-++..+-++++++| +|+..|..|+.|||.....
T Consensus 205 ~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~p-vl~~~gl~D~~cPP~t~fA 283 (320)
T PF05448_consen 205 DVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCP-VLFSVGLQDPVCPPSTQFA 283 (320)
T ss_dssp ESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SE-EEEEEETT-SSS-HHHHHH
T ss_pred cCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCC-EEEEEecCCCCCCchhHHH
Confidence 99964 4333221 11 122211 112222233 346677778888888889999998 9999999999999999888
Q ss_pred HHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHh
Q 006375 589 FVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 589 ~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 636 (648)
.++++.. ++++++++ ..||...... .....++||++|
T Consensus 284 ~yN~i~~---~K~l~vyp---~~~He~~~~~-----~~~~~~~~l~~~ 320 (320)
T PF05448_consen 284 AYNAIPG---PKELVVYP---EYGHEYGPEF-----QEDKQLNFLKEH 320 (320)
T ss_dssp HHCC--S---SEEEEEET---T--SSTTHHH-----HHHHHHHHHHH-
T ss_pred HHhccCC---CeeEEecc---CcCCCchhhH-----HHHHHHHHHhcC
Confidence 8888863 45677776 6788543221 112457899875
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=172.41 Aligned_cols=223 Identities=16% Similarity=0.159 Sum_probs=142.8
Q ss_pred eEEEEEeC-CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhH-HHHHHCCCEEEEEccCCCC------
Q 006375 376 TERKWASA-SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSR-LSLLDRGFIFAIAQIRGGG------ 447 (648)
Q Consensus 376 ~~~~~~~s-~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~-~~l~~~G~~v~~~~~rG~g------ 447 (648)
.+.+++.| .-|..+++.+++|+. ..+++.|+|+++||..+....+.+.... ..+...|++|++||..++|
T Consensus 18 ~~~~~~~s~~l~~~~~~~vy~P~~--~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~ 95 (283)
T PLN02442 18 NRRYKHFSSTLGCSMTFSVYFPPA--SDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGE 95 (283)
T ss_pred EEEEEEeccccCCceEEEEEcCCc--ccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCC
Confidence 45555555 456789999999984 3456799999999976654332222222 3445579999999986544
Q ss_pred ------CCChhhhhccc-ccCCC-C----cHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEe
Q 006375 448 ------ELGRQWYENGK-FLKKK-N----TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 515 (648)
Q Consensus 448 ------~~g~~~~~~~~-~~~~~-~----~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~ 515 (648)
++|..++.... ..++. . ..+++...++... ..+|+++++|+|+||||++++.++.++|++|+++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~ 173 (283)
T PLN02442 96 ADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSA 173 (283)
T ss_pred ccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEE
Confidence 11222211110 01100 1 1233333333322 236889999999999999999999999999999999
Q ss_pred cCCcccccccccCCCCCCCcccc-cccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCc-hHHHHHHHH
Q 006375 516 AVPFVDVLTTMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYS-EPAKFVAKL 593 (648)
Q Consensus 516 ~~~~~d~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~-~~~~~~~~l 593 (648)
.+|++|+.... ...... ..+|.+ ++.++.....+|+.++...+.| +|++||++|++|+.. +++.+++++
T Consensus 174 ~~~~~~~~~~~------~~~~~~~~~~g~~--~~~~~~~d~~~~~~~~~~~~~p-vli~~G~~D~~v~~~~~s~~~~~~l 244 (283)
T PLN02442 174 FAPIANPINCP------WGQKAFTNYLGSD--KADWEEYDATELVSKFNDVSAT-ILIDQGEADKFLKEQLLPENFEEAC 244 (283)
T ss_pred ECCccCcccCc------hhhHHHHHHcCCC--hhhHHHcChhhhhhhccccCCC-EEEEECCCCccccccccHHHHHHHH
Confidence 99998853211 101111 223443 2222222344555556555777 999999999999974 689999999
Q ss_pred HhcCCCCCeEEEEecCCCCcc
Q 006375 594 REMKTDDNILLFKCELGAGHF 614 (648)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~gH~ 614 (648)
++++.+.++.+++ +.+|.
T Consensus 245 ~~~g~~~~~~~~p---g~~H~ 262 (283)
T PLN02442 245 KEAGAPVTLRLQP---GYDHS 262 (283)
T ss_pred HHcCCCeEEEEeC---CCCcc
Confidence 9999887666665 77995
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-17 Score=172.70 Aligned_cols=206 Identities=12% Similarity=0.118 Sum_probs=148.7
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
+..+.|||||++|||+...+| ..+||++|+++|+.... ..++....++||||| .|+|+...+ ...+||.+++.+
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g--~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~--g~~~Iy~~dl~t 295 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENR--KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD--GQPEIYVVDIAT 295 (448)
T ss_pred ccCceECCCCCEEEEEEecCC--CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC--CCeEEEEEECCC
Confidence 457899999999999987665 57999999999886543 344444569999999 899876532 346799999988
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-ccceeeeEeecCCEEEEEecc
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVGVDTAASHRGNHFFITRRS 239 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-~~~~~~~~s~dg~~l~~~~~~ 239 (648)
+. ...+... ......+.|||||++|++.+...+..+||++|+++++ .+.++.. .......|+|||++|+|.+..
T Consensus 296 g~--~~~lt~~--~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 296 KA--LTRITRH--RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-VSRLTFEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred CC--eEECccC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEEecCCCCCcCeeECCCCCEEEEEEec
Confidence 73 2333221 2233467899999999998877777899999999887 6666532 122234699999999998775
Q ss_pred CCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCc
Q 006375 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEP 303 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~ 303 (648)
...++|+++|++++ ..+.+.....+ .-..++++++.+++....++...+++++.+ |..
T Consensus 371 --~g~~~I~~~dl~~g-~~~~lt~~~~d-~~ps~spdG~~I~~~~~~~g~~~l~~~~~~--G~~ 428 (448)
T PRK04792 371 --NGKFNIARQDLETG-AMQVLTSTRLD-ESPSVAPNGTMVIYSTTYQGKQVLAAVSID--GRF 428 (448)
T ss_pred --CCceEEEEEECCCC-CeEEccCCCCC-CCceECCCCCEEEEEEecCCceEEEEEECC--CCc
Confidence 34578999999873 33323322222 123567777788888888888889988876 553
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-18 Score=168.43 Aligned_cols=241 Identities=17% Similarity=0.142 Sum_probs=151.8
Q ss_pred EEEEEeCC-CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHH-CCCEEEEEcc--CCCCCCC--
Q 006375 377 ERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQI--RGGGELG-- 450 (648)
Q Consensus 377 ~~~~~~s~-~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~--rG~g~~g-- 450 (648)
+.+.+.+. .+.++++.++.|++. . .++.|+|+++||..+....+.+......+++ .|+.|++||. ||.+..|
T Consensus 14 ~~~~~~s~~~~~~~~~~v~~P~~~-~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~ 91 (275)
T TIGR02821 14 GFYRHKSETCGVPMTFGVFLPPQA-A-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGED 91 (275)
T ss_pred EEEEEeccccCCceEEEEEcCCCc-c-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCc
Confidence 44444443 456788888888764 2 3468999999997665544433333445554 5999999998 6665333
Q ss_pred --------hhhhhccc-ccC--CCCcHhHHHHHHHHHHHc-CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 451 --------RQWYENGK-FLK--KKNTFTDFIACAEYLIKN-CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 451 --------~~~~~~~~-~~~--~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
..|+.... ..+ .......+...+..+++. ..+|+++++++|+||||++++.++.++|++|+++++.+|
T Consensus 92 ~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~ 171 (275)
T TIGR02821 92 DAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAP 171 (275)
T ss_pred ccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECC
Confidence 12221100 000 111223334444444443 447889999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCccccc-ccCCCCCHHHHHHHHcCCccccCCCC-CCCeEEEeecCCCCccCC-chHHHHHHHHHh
Q 006375 519 FVDVLTTMLDPTIPLTTAEWE-EWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMY-SEPAKFVAKLRE 595 (648)
Q Consensus 519 ~~d~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~sp~~~~~~~-~~P~~li~~g~~D~~v~~-~~~~~~~~~l~~ 595 (648)
+.+.... +....... .++.+. +. +..++|...+.+. ..||+|+.||+.|++||. .++..+.++|++
T Consensus 172 ~~~~~~~------~~~~~~~~~~l~~~~--~~---~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~ 240 (275)
T TIGR02821 172 IVAPSRC------PWGQKAFSAYLGADE--AA---WRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRA 240 (275)
T ss_pred ccCcccC------cchHHHHHHHhcccc--cc---hhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHH
Confidence 9875321 11111111 123321 11 1234555444332 345699999999999999 689999999999
Q ss_pred cCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 596 MKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 596 ~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
++++.++.+++ +.+|....-. ..+...+.|+.+++
T Consensus 241 ~g~~v~~~~~~---g~~H~f~~~~----~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 241 AGQALTLRRQA---GYDHSYYFIA----SFIADHLRHHAERL 275 (275)
T ss_pred cCCCeEEEEeC---CCCccchhHH----HhHHHHHHHHHhhC
Confidence 99887766665 8899653221 12334567776654
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=170.37 Aligned_cols=234 Identities=15% Similarity=0.105 Sum_probs=156.4
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCC-CCCchhHHHHHH-CCCEEEEEccCCCCCCChh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~-~G~~v~~~~~rG~g~~g~~ 452 (648)
..+.+.+++.+| .|++.+++|+.. ..|+||++|||...... ..+......|+. .|+.|+.+|||.+.+.
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~~-----~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~--- 126 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQPD-----SQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA--- 126 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCCC-----CCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC---
Confidence 467788888887 499998888532 36999999998654333 234555667776 4999999999987653
Q ss_pred hhhcccccCCCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhC------CCceeEEEecCCccccc
Q 006375 453 WYENGKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR------PDLFKAAVAAVPFVDVL 523 (648)
Q Consensus 453 ~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~~~a~v~~~~~~d~~ 523 (648)
.....++|+.++++|+.++ ..+|++||+|+|+|+||.+++.++.+. +..++++|+.+|++|+.
T Consensus 127 --------~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~ 198 (318)
T PRK10162 127 --------RFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLR 198 (318)
T ss_pred --------CCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCC
Confidence 1224679999999999764 347899999999999999998887652 35788999999998853
Q ss_pred cccc----CCCC-CCCcccc----ccc-CCCCCHHHHHHHHcCCccccC--CC--CCCCeEEEeecCCCCccCCchHHHH
Q 006375 524 TTML----DPTI-PLTTAEW----EEW-GDPWKEEFYFYMKSYSPVDNV--KA--QNYPHILVTAGLNDPRVMYSEPAKF 589 (648)
Q Consensus 524 ~~~~----~~~~-~~~~~~~----~~~-g~~~~~~~~~~~~~~sp~~~~--~~--~~~P~~li~~g~~D~~v~~~~~~~~ 589 (648)
.... .... .+....+ ..| +++.+ ..+|+... .. ...||++|++|+.|+.+ .+++.|
T Consensus 199 ~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~--------~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~ 268 (318)
T PRK10162 199 DSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDAD--------RESPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLL 268 (318)
T ss_pred CChhHHHhCCCccccCHHHHHHHHHHhCCCccc--------cCCcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHH
Confidence 2100 0000 0100000 001 11110 11232111 11 25688999999999875 589999
Q ss_pred HHHHHhcCCCCCeEEEEecCCCCccCCC--ch-HHHHHHHHHHHHHHHHhcC
Q 006375 590 VAKLREMKTDDNILLFKCELGAGHFSKS--GR-FERLREAAFTYTFLMRALS 638 (648)
Q Consensus 590 ~~~l~~~~~~~~~~~~~~~~~~gH~~~~--~~-~~~~~~~~~~~~fl~~~l~ 638 (648)
.++|+++|+++++.+++ +..|++.. .. .+..+.+..+.+||.++|+
T Consensus 269 ~~~L~~aGv~v~~~~~~---g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 269 YQTLAAHQQPCEFKLYP---GTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHHHHcCCCEEEEEEC---CCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 99999999998777776 88895531 11 2222334456789998875
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-17 Score=168.80 Aligned_cols=203 Identities=10% Similarity=0.017 Sum_probs=147.1
Q ss_pred eeEEeCCCCCE-EEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 84 GCFQVSPDNKL-VAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 84 ~~~~~SPDG~~-la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
..+.|||||++ ++|++..++ ..+||++|+++|+....+ .++....+.||||| +++|+... ....+||.+++.+
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~--~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~--~g~~~Iy~~dl~~ 266 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGER--KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAP--KGQPDIYLYDTNT 266 (419)
T ss_pred EeEEECCCCCcEEEEEEccCC--CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEcc--CCCcEEEEEECCC
Confidence 47999999996 666665443 469999999999877543 44545568899999 99998764 3357899999987
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccC
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSD 240 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~ 240 (648)
+. .+.+... +.....+.|||||++|+|.+++.+..+||++|+++++ .++++.... ....|||||+.|+|+++..
T Consensus 267 g~--~~~LT~~--~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 267 KT--LTQITNY--PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQVVFHGK-NNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred Cc--EEEcccC--CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC-eEeCccCCC-cCceECCCCCEEEEEEcCC
Confidence 73 3333322 2233467899999999999988778899999999987 666654311 2347999999999998753
Q ss_pred CC----CCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 241 EL----FNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 241 ~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
.. ..++|+++++++. ..+.++... ......|++++..+++.....+...|++++++
T Consensus 341 ~~~~~~~~~~I~v~d~~~g-~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSD-YIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CcccCCCCcEEEEEECCCC-CeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 21 2379999999873 344344432 22235567777788888777777889999988
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-18 Score=157.12 Aligned_cols=210 Identities=21% Similarity=0.264 Sum_probs=153.7
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCC-CchhHHHHHH-CCCEEEEEccCCCCCCChh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-FNSSRLSLLD-RGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~-~G~~v~~~~~rG~g~~g~~ 452 (648)
..+.+..++..|..+-+..+.|+.. ..++|||.||.-. +.+ .......|.. ..+.++..||+|.|..+..
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~-----~~~~lly~hGNa~---Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~ 105 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA-----AHPTLLYSHGNAA---DLGQMVELFKELSIFLNCNVVSYDYSGYGRSSGK 105 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc-----cceEEEEcCCccc---chHHHHHHHHHHhhcccceEEEEecccccccCCC
Confidence 3455667777787777775655432 4689999999521 222 1111223333 3899999999998855433
Q ss_pred hhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCC
Q 006375 453 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 532 (648)
Q Consensus 453 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~ 532 (648)
....+.++|+.++.+||.+... .+++|+++|.|+|...+..+|.+.| .+|+|+.+|+++.++.+... .
T Consensus 106 -------psE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~--~ 173 (258)
T KOG1552|consen 106 -------PSERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPD--T 173 (258)
T ss_pred -------cccccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccC--c
Confidence 2233889999999999999876 7899999999999999999999988 89999999999988766421 1
Q ss_pred CCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCC
Q 006375 533 LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 612 (648)
Q Consensus 533 ~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g 612 (648)
.....++ .|.-++.|+.+++| +||+||++|++|+..++.+++++.+.. .++++.+ ++|
T Consensus 174 ~~~~~~d---------------~f~~i~kI~~i~~P-VLiiHgtdDevv~~sHg~~Lye~~k~~---~epl~v~---g~g 231 (258)
T KOG1552|consen 174 KTTYCFD---------------AFPNIEKISKITCP-VLIIHGTDDEVVDFSHGKALYERCKEK---VEPLWVK---GAG 231 (258)
T ss_pred ceEEeec---------------cccccCcceeccCC-EEEEecccCceecccccHHHHHhcccc---CCCcEEe---cCC
Confidence 1111111 22336778888998 999999999999999999999998753 5677887 899
Q ss_pred ccCCCchHHHHHHH
Q 006375 613 HFSKSGRFERLREA 626 (648)
Q Consensus 613 H~~~~~~~~~~~~~ 626 (648)
|....-.++.++.+
T Consensus 232 H~~~~~~~~yi~~l 245 (258)
T KOG1552|consen 232 HNDIELYPEYIEHL 245 (258)
T ss_pred CcccccCHHHHHHH
Confidence 97665555555543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-17 Score=169.67 Aligned_cols=207 Identities=12% Similarity=0.026 Sum_probs=138.6
Q ss_pred eeEEeCCCCCE--EEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEE--E
Q 006375 84 GCFQVSPDNKL--VAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH--K 157 (648)
Q Consensus 84 ~~~~~SPDG~~--la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~--~ 157 (648)
..|+|||||+. ++|++..+| ..+||++++++|+.... ..++....++||||| +|+|+..... ..++|.+ +
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g--~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g--~~di~~~~~~ 263 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLG--VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYG--NPDLFIQSFS 263 (428)
T ss_pred ccceEccCCCceEEEEEEccCC--CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCC--CcceeEEEee
Confidence 47899999988 556877776 58999999999986643 345555569999999 9999875322 3346664 4
Q ss_pred CCCCC-CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeecccc-eeeeEeecCCEEE
Q 006375 158 LEADQ-SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVG-VDTAASHRGNHFF 234 (648)
Q Consensus 158 l~~~~-~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~~-~~~~~s~dg~~l~ 234 (648)
+.++. .+...+... .......+.|||||++|++.+...+..+||+++++... ..+.++..... ....|||||++|+
T Consensus 264 ~~~g~~g~~~~lt~~-~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~La 342 (428)
T PRK01029 264 LETGAIGKPRRLLNE-AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIA 342 (428)
T ss_pred cccCCCCcceEeecC-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEE
Confidence 44321 122334322 12223357899999999998876667899999986422 25556543322 3467999999999
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 235 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
|.+... ...+|+++|+++. ..+.+........-..|+++++.+++....++...+++++++
T Consensus 343 f~~~~~--g~~~I~v~dl~~g-~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 343 FCSVIK--GVRQICVYDLATG-RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred EEEcCC--CCcEEEEEECCCC-CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 998763 3578999999873 333344332222223344455677777766677789998887
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=173.59 Aligned_cols=251 Identities=16% Similarity=0.132 Sum_probs=154.9
Q ss_pred cceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhh
Q 006375 374 YFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 453 (648)
Q Consensus 374 ~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~ 453 (648)
+..++.+..+.+|.+|.+....|++. .+.|+||++||..+. ....|...+..|+++||.|+++|+||+|......
T Consensus 59 ~~~~~~~~~~~~g~~l~~~~~~p~~~----~~~~~iv~lHG~~~~-~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~ 133 (349)
T PLN02385 59 IKTEESYEVNSRGVEIFSKSWLPENS----RPKAAVCFCHGYGDT-CTFFFEGIARKIASSGYGVFAMDYPGFGLSEGLH 133 (349)
T ss_pred cceeeeeEEcCCCCEEEEEEEecCCC----CCCeEEEEECCCCCc-cchHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC
Confidence 44455556678999998887666542 346899999995433 2222345567788889999999999998653210
Q ss_pred hhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCC----
Q 006375 454 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP---- 529 (648)
Q Consensus 454 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~---- 529 (648)
+....-...++|+.+.++++..+...+..++.++|+||||.+++.++.++|++++++|+.+|...+.......
T Consensus 134 ---~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~ 210 (349)
T PLN02385 134 ---GYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVL 210 (349)
T ss_pred ---CCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHH
Confidence 0000111234666666666655433445689999999999999999999999999999998865421110000
Q ss_pred --------CCCCC----cccccc--cCCC-----------------CCHHHHHHHHcC-CccccCCCCCCCeEEEeecCC
Q 006375 530 --------TIPLT----TAEWEE--WGDP-----------------WKEEFYFYMKSY-SPVDNVKAQNYPHILVTAGLN 577 (648)
Q Consensus 530 --------~~~~~----~~~~~~--~g~~-----------------~~~~~~~~~~~~-sp~~~~~~~~~P~~li~~g~~ 577 (648)
..|.. ...+.. +.++ .-....+.+... .....+.++++| +||+||++
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P-~Lii~G~~ 289 (349)
T PLN02385 211 QILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLP-LLILHGEA 289 (349)
T ss_pred HHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCC-EEEEEeCC
Confidence 00000 000000 0000 000111111111 112345667898 99999999
Q ss_pred CCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHH-HH-HHHHHHHHHHHhcC
Q 006375 578 DPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFER-LR-EAAFTYTFLMRALS 638 (648)
Q Consensus 578 D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~-~~-~~~~~~~fl~~~l~ 638 (648)
|..||+..+.++++++... ..++++++ ++||....+..+. .+ ...++.+||.+++.
T Consensus 290 D~vv~~~~~~~l~~~~~~~--~~~l~~i~---~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 290 DKVTDPSVSKFLYEKASSS--DKKLKLYE---DAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred CCccChHHHHHHHHHcCCC--CceEEEeC---CCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 9999999999998877532 34556665 8899765444332 22 34467899998864
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-16 Score=169.29 Aligned_cols=203 Identities=15% Similarity=0.119 Sum_probs=144.3
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
+..++|||||++|||....+| ..+||++|+++|+.... ..++....+.||||| .|+|+... ....+||.+++.+
T Consensus 204 v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~--~g~~~Iy~~d~~~ 279 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANG--RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQ--GGNTDIYTMDLRS 279 (435)
T ss_pred eEeeEECCCCCEEEEEEecCC--CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEec--CCCceEEEEECCC
Confidence 567999999999999987666 47999999999986543 234445569999999 89887653 3356799999987
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEecc
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRS 239 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~ 239 (648)
+. ...+.. . ......+.|||||++|++.+++.+..+||++|+++++ .+.++..... ....|||||++|+|.+..
T Consensus 280 ~~--~~~Lt~-~-~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 280 GT--TTRLTD-S-PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-PRRISFGGGRYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred Cc--eEEccC-C-CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-eEEeecCCCcccCeEECCCCCEEEEEEcC
Confidence 63 233322 1 2233457899999999998877777899999999887 7777653222 235699999999998864
Q ss_pred CCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCe---eEEEEEEcC
Q 006375 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGL---QKITTYRLP 298 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~l~v~~~~ 298 (648)
. ..++|+++++++ +..+ ++.......-..|+++++.+++.....+. ..|++++++
T Consensus 355 ~--~~~~i~~~d~~~-~~~~-~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 355 G--GQFSIGVMKPDG-SGER-ILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred C--CceEEEEEECCC-CceE-eccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 2 357899999865 3333 33333322233455556677776665554 578888887
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-16 Score=169.47 Aligned_cols=248 Identities=13% Similarity=0.058 Sum_probs=172.0
Q ss_pred CCCCCeEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCcEEEeeEEeCCCC
Q 006375 13 DVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDN 92 (648)
Q Consensus 13 ~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~SPDG 92 (648)
..+.|...+..++|....+++....++.....+ ...+.|++++.. +..+.|||||
T Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-----------------~~~~~l~~~~~~--------~~~p~~Spdg 201 (417)
T TIGR02800 147 LTGERGAFSTRIAYVSKSGKSRRYELQVADYDG-----------------ANPQTITRSREP--------ILSPAWSPDG 201 (417)
T ss_pred hcCCCCCcCCEEEEEEEeCCCCcceEEEEcCCC-----------------CCCEEeecCCCc--------eecccCCCCC
Confidence 345666677877777766555566666655432 245677775532 3467899999
Q ss_pred CEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEe
Q 006375 93 KLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYH 170 (648)
Q Consensus 93 ~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 170 (648)
++|||+....+ ..+|+++|+++|+.... ...+....++|+||| .|+|+... ....+||.++++++.. ..+..
T Consensus 202 ~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~--~~~~~i~~~d~~~~~~--~~l~~ 275 (417)
T TIGR02800 202 QKLAYVSFESG--KPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSK--DGNPDIYVMDLDGKQL--TRLTN 275 (417)
T ss_pred CEEEEEEcCCC--CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECC--CCCccEEEEECCCCCE--EECCC
Confidence 99999987655 47899999999875532 344444559999999 89887643 2346799999988732 22222
Q ss_pred ecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCEEEEEeccCCCCCcEEEE
Q 006375 171 EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSELLA 249 (648)
Q Consensus 171 ~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 249 (648)
. ......+.|+|||++|++.+...+..+||++|+++++ .+.++.... .....|+|||+.|++.... .+.++|+.
T Consensus 276 ~--~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~--~~~~~i~~ 350 (417)
T TIGR02800 276 G--PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VRRLTFRGGYNASPSWSPDGDLIAFVHRE--GGGFNIAV 350 (417)
T ss_pred C--CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCCCccCeEECCCCCEEEEEEcc--CCceEEEE
Confidence 1 1222356899999999998877667799999999887 666664322 2345699999999988775 35689999
Q ss_pred EeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 250 CPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
+++.+ +..+ +++......-..++++++.+++...+++...+++++.+
T Consensus 351 ~d~~~-~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 351 MDLDG-GGER-VLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EeCCC-CCeE-EccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 99876 3333 34433222233566677789888888888888888766
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=154.84 Aligned_cols=211 Identities=19% Similarity=0.184 Sum_probs=150.0
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
+-+||++||-.|+..+ .......|.++||.|.+|+++|+|-.+..+-+.+...| ++|+.++.++|.+.++ +
T Consensus 15 ~~AVLllHGFTGt~~D--vr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~ 85 (243)
T COG1647 15 NRAVLLLHGFTGTPRD--VRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---D 85 (243)
T ss_pred CEEEEEEeccCCCcHH--HHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---C
Confidence 3799999996665443 45556788889999999999999998888877766666 5899999999999998 7
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc-CCCCCCCcccccccCCCCCHHHHHHHHcCC--c----
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML-DPTIPLTTAEWEEWGDPWKEEFYFYMKSYS--P---- 558 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~s--p---- 558 (648)
.|++.|.||||.+++.++.++| .+++|..++.+.+.+... -+.+-....++..+-.+..+...+.+.+|. |
T Consensus 86 eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~~~~~ 163 (243)
T COG1647 86 EIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTPMTTT 163 (243)
T ss_pred eEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcchHHHH
Confidence 9999999999999999999998 677777766555332110 000000011223333333333334455555 2
Q ss_pred ----------cccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHH
Q 006375 559 ----------VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAF 628 (648)
Q Consensus 559 ----------~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~ 628 (648)
..++..|..| +||++|.+|+.||...+..++..+... ++++.+|. ++||....+. ++-....+
T Consensus 164 ~~~~~~i~~~~~~~~~I~~p-t~vvq~~~D~mv~~~sA~~Iy~~v~s~--~KeL~~~e---~SgHVIt~D~-Erd~v~e~ 236 (243)
T COG1647 164 AQLKKLIKDARRSLDKIYSP-TLVVQGRQDEMVPAESANFIYDHVESD--DKELKWLE---GSGHVITLDK-ERDQVEED 236 (243)
T ss_pred HHHHHHHHHHHhhhhhcccc-hhheecccCCCCCHHHHHHHHHhccCC--cceeEEEc---cCCceeecch-hHHHHHHH
Confidence 2456677888 999999999999999999999998754 45677776 8899654332 22222336
Q ss_pred HHHHHH
Q 006375 629 TYTFLM 634 (648)
Q Consensus 629 ~~~fl~ 634 (648)
++.||.
T Consensus 237 V~~FL~ 242 (243)
T COG1647 237 VITFLE 242 (243)
T ss_pred HHHHhh
Confidence 788885
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-18 Score=161.96 Aligned_cols=192 Identities=11% Similarity=0.121 Sum_probs=126.2
Q ss_pred EEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHH-HCCCEEEEEccCCCCCCChh--hhhcccccCCCCcHhH
Q 006375 392 CIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLL-DRGFIFAIAQIRGGGELGRQ--WYENGKFLKKKNTFTD 468 (648)
Q Consensus 392 ~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~-~~G~~v~~~~~rG~g~~g~~--~~~~~~~~~~~~~~~D 468 (648)
+++.|++. +++.|+||++||+.+..........+..++ +.||+|++||+||++..+.. |..............|
T Consensus 2 ~ly~P~~~---~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T TIGR01840 2 YVYVPAGL---TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVES 78 (212)
T ss_pred EEEcCCCC---CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHH
Confidence 55667664 467899999999765543221111133344 46999999999998755443 3322211222346788
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHH
Q 006375 469 FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEE 548 (648)
Q Consensus 469 ~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~ 548 (648)
+...++++.++..+|++||+|+|+|+||.+++.++.++|++|+++++.++..-.... ... ........+....
T Consensus 79 ~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~----~~~---~~~~~~~~~~~~~ 151 (212)
T TIGR01840 79 LHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEAS----SSI---SATPQMCTAATAA 151 (212)
T ss_pred HHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccc----cch---hhHhhcCCCCCHH
Confidence 999999999888899999999999999999999999999999999888875321110 000 0011111122222
Q ss_pred HHH-HHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhc
Q 006375 549 FYF-YMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREM 596 (648)
Q Consensus 549 ~~~-~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~ 596 (648)
.+. .+.... .. .....|+++|+||++|.+||+..+++++++|++.
T Consensus 152 ~~~~~~~~~~--~~-~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 152 SVCRLVRGMQ--SE-YNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred HHHHHHhccC--Cc-ccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 221 122111 11 1224666899999999999999999999999876
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-16 Score=163.14 Aligned_cols=207 Identities=11% Similarity=0.028 Sum_probs=146.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..++|||||++|||+....| ..+|+++++++|+.... ..++....+.||||| .|+|+... ....+||.+++.
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g--~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~--~g~~~I~~~d~~ 275 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSK--TGSLNLYVMDLA 275 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcC--CCCcEEEEEECC
Confidence 3468999999999999987555 57899999999986543 344445569999999 89987653 233569999998
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEec
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRR 238 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~ 238 (648)
++. ...+... ......+.|||||++|++.+++.+..+||++|+++++ .+.++..... ....|||||++|+|.+.
T Consensus 276 tg~--~~~lt~~--~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 276 SGQ--IRQVTDG--RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred CCC--EEEccCC--CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 762 2333222 2233468999999999998877667899999999887 6666543222 23569999999999887
Q ss_pred cCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCc
Q 006375 239 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEP 303 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~ 303 (648)
.. ....|+.+|+++. ..+.+. ......-..+++++..+++...+.+...+++++++ |..
T Consensus 351 ~~--g~~~I~~~dl~~g-~~~~Lt-~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~--G~~ 409 (429)
T PRK03629 351 NG--GQQHIAKQDLATG-GVQVLT-DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD--GRF 409 (429)
T ss_pred cC--CCceEEEEECCCC-CeEEeC-CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC--CCC
Confidence 53 3468999998763 333233 22222234566666678777777677788988887 553
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-16 Score=161.20 Aligned_cols=240 Identities=10% Similarity=0.048 Sum_probs=166.4
Q ss_pred CEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCC-e-EEEEEeCCCCCCceEEEEECCCCCCCcEEEEe
Q 006375 93 KLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-A-LVYITMDEILRPDKAWLHKLEADQSNDICLYH 170 (648)
Q Consensus 93 ~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~-l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 170 (648)
.++||.+...|....+|+++|.++......+..+....+.||||| + ++|++... +..+||++++.++ +.+.+..
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~--~~~~Iyv~dl~tg--~~~~lt~ 230 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGE--RKPTLYKYNLYTG--KKEKIAS 230 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccC--CCCEEEEEECCCC--cEEEEec
Confidence 567777765454468999999998766544333455579999999 6 66666532 3458999999887 3444443
Q ss_pred ecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCEEEEEeccCCCCCcEEEE
Q 006375 171 EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSELLA 249 (648)
Q Consensus 171 ~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 249 (648)
. +.....+.|||||++|++.....+..+||++|+++++ .++++.... .....|+|||++|+|++++. ...+||+
T Consensus 231 ~--~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~--g~~~Iy~ 305 (419)
T PRK04043 231 S--QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRL--GYPNIFM 305 (419)
T ss_pred C--CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCC--CCceEEE
Confidence 2 2334457899999999998877777899999999987 788876543 34567999999999999874 3468999
Q ss_pred EeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecC------CeeEEEEEEcCCCCCcccccCCCceeecCCCeeeee
Q 006375 250 CPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREG------GLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSID 323 (648)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~ 323 (648)
+|++++...+ ++.... . ...++++++.+++..... +..+|++++++ ++..+.|+... ...
T Consensus 306 ~dl~~g~~~r-lt~~g~-~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~--~g~~~~LT~~~---------~~~ 371 (419)
T PRK04043 306 KKLNSGSVEQ-VVFHGK-N-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN--SDYIRRLTANG---------VNQ 371 (419)
T ss_pred EECCCCCeEe-CccCCC-c-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC--CCCeEECCCCC---------CcC
Confidence 9998743333 443322 2 246788888888877654 33588988887 44444444321 111
Q ss_pred CCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 324 PSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 324 ~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
...+++|+..+.|.... ..-..++.+++..+.
T Consensus 372 ~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 372 FPRFSSDGGSIMFIKYL-GNQSALGIIRLNYNK 403 (419)
T ss_pred CeEECCCCCEEEEEEcc-CCcEEEEEEecCCCe
Confidence 24567889988877554 444568999987665
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-17 Score=155.18 Aligned_cols=216 Identities=18% Similarity=0.197 Sum_probs=158.4
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChh----
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ---- 452 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~---- 452 (648)
+.+.+++.+ .++++++.+|+.. ++.|+||++|+-+|... ........|+.+||+|++||+-+..+....
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~~----~~~P~VIv~hei~Gl~~--~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~ 75 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAGA----GGFPGVIVLHEIFGLNP--HIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDE 75 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCcC----CCCCEEEEEecccCCch--HHHHHHHHHHhCCcEEEechhhccCCCCCccccc
Confidence 456677777 7799999999875 34499999999887654 355667899999999999998552222111
Q ss_pred --hhhcc--cccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccC
Q 006375 453 --WYENG--KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD 528 (648)
Q Consensus 453 --~~~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~ 528 (648)
....+ ..........|+.++++||..+..++++||+++|+|+||.+++.++.+.| .++|+|+..|..-..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~~----- 149 (236)
T COG0412 76 PAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIAD----- 149 (236)
T ss_pred HHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCCC-----
Confidence 11111 01111457899999999999998899999999999999999999999877 699999998742100
Q ss_pred CCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEec
Q 006375 529 PTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCE 608 (648)
Q Consensus 529 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 608 (648)
. .....++++| +|+.+|+.|..+|.....++.+++.++++..++.+|.
T Consensus 150 --------------~---------------~~~~~~~~~p-vl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~-- 197 (236)
T COG0412 150 --------------D---------------TADAPKIKVP-VLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYP-- 197 (236)
T ss_pred --------------c---------------ccccccccCc-EEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeC--
Confidence 0 0014466788 9999999999999999999999999987777666666
Q ss_pred CCCCccCCCc---------hHHHHHHHHHHHHHHHHhcC
Q 006375 609 LGAGHFSKSG---------RFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 609 ~~~gH~~~~~---------~~~~~~~~~~~~~fl~~~l~ 638 (648)
++.|.+... ....-....++++||.++|+
T Consensus 198 -ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 198 -GAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred -CCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 677854321 11112223357899998886
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-18 Score=163.82 Aligned_cols=205 Identities=19% Similarity=0.198 Sum_probs=134.6
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCC-CChhhhhc--ccc----cC
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGE-LGRQWYEN--GKF----LK 461 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~-~g~~~~~~--~~~----~~ 461 (648)
+.+++..|++. ++.|.||++|+.+|.. +.....+..|+++||.|++||+-++.+ ......+. ... ..
T Consensus 1 ~~ay~~~P~~~----~~~~~Vvv~~d~~G~~--~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~ 74 (218)
T PF01738_consen 1 IDAYVARPEGG----GPRPAVVVIHDIFGLN--PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPR 74 (218)
T ss_dssp EEEEEEEETTS----SSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHS
T ss_pred CeEEEEeCCCC----CCCCEEEEEcCCCCCc--hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhh
Confidence 46777887653 6789999999988765 223344678899999999999865544 11111100 000 01
Q ss_pred CCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCccccccc
Q 006375 462 KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW 541 (648)
Q Consensus 462 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~ 541 (648)
......|+.+++++|.++..++.+||+++|+|+||.+++.++.+. +.++|+|+..|...
T Consensus 75 ~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~-------------------- 133 (218)
T PF01738_consen 75 PEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP-------------------- 133 (218)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS--------------------
T ss_pred HHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC--------------------
Confidence 124568889999999999878899999999999999999999876 57999999988100
Q ss_pred CCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchH-
Q 006375 542 GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRF- 620 (648)
Q Consensus 542 g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~- 620 (648)
...+.....++++| +|+++|++|+.++..+..++.++|++++.+.++.+|+ +++|++.....
T Consensus 134 -------------~~~~~~~~~~~~~P-~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~---ga~HgF~~~~~~ 196 (218)
T PF01738_consen 134 -------------PPPPLEDAPKIKAP-VLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYP---GAGHGFANPSRP 196 (218)
T ss_dssp -------------GGGHHHHGGG--S--EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEET---T--TTTTSTTST
T ss_pred -------------CCcchhhhcccCCC-EeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECC---CCcccccCCCCc
Confidence 00112223455677 9999999999999999999999999999887777775 88996643221
Q ss_pred -----HHHHHHHHHHHHHHHhc
Q 006375 621 -----ERLREAAFTYTFLMRAL 637 (648)
Q Consensus 621 -----~~~~~~~~~~~fl~~~l 637 (648)
...+......+||.++|
T Consensus 197 ~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 197 PYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp T--HHHHHHHHHHHHHHHCC--
T ss_pred ccCHHHHHHHHHHHHHHHHhcC
Confidence 11222335688888776
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=162.40 Aligned_cols=203 Identities=13% Similarity=0.073 Sum_probs=145.7
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
+..++|||||++|||+...++ ..+||++|+++|+..... .++....++||||| .|+|+... ....+||.+++.+
T Consensus 198 v~~p~wSPDG~~la~~s~~~~--~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~--~g~~~Iy~~d~~~ 273 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESK--KPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSR--DGNSQIYTVNADG 273 (427)
T ss_pred cccceEcCCCCEEEEEEccCC--CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEcc--CCCceEEEEECCC
Confidence 457899999999999987654 578999999999865432 44445569999999 99887653 2356799999876
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc-cceeeeEeecCCEEEEEecc
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-VGVDTAASHRGNHFFITRRS 239 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~-~~~~~~~s~dg~~l~~~~~~ 239 (648)
+. ...+. .. ......+.|||||++|++.++..+..+||.++++++. .+.++... ......|||||++|+|.++.
T Consensus 274 ~~--~~~lt-~~-~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 274 SG--LRRLT-QS-SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred CC--cEECC-CC-CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 62 23332 22 2233457899999999998877677899999998876 66665322 12345699999999999875
Q ss_pred CCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
. ..++|+++++++. ..+.+.... ...-..|++++..+++.....+...+++++++
T Consensus 349 ~--g~~~I~v~d~~~g-~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 349 G--GAFKLYVQDLATG-QVTALTDTT-RDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred C--CcEEEEEEECCCC-CeEEccCCC-CccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 3 3468999999763 344344332 22234566666788888888888889988886
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=177.47 Aligned_cols=260 Identities=17% Similarity=0.204 Sum_probs=170.8
Q ss_pred CCCCCCcceEEEEEeCC-----CCe--EEeEEEEEeeCccccCCCCcEEEEe----cCCCCCC-------C------C--
Q 006375 368 GFDTNNYFTERKWASAS-----DGT--QIPICIVYRKNLVKLDGSDPLLLYG----YGSYEIC-------N------D-- 421 (648)
Q Consensus 368 ~~~~~~~~~~~~~~~s~-----~g~--~i~~~l~~~~~~~~~~~~~P~vl~~----hGg~~~~-------~------~-- 421 (648)
-|+...+..|.+++.+. ||. .|.+.++.|+.. ..+-|.|+|+-. .|.-... . .
T Consensus 162 ~~~~~~~ire~v~Vet~~Dtd~dg~~D~v~~~i~rP~~~-~~g~k~p~i~~aspY~~g~~~~~~~~~~~~~~~~l~~~~~ 240 (767)
T PRK05371 162 VFDTSQLIREVVYVETPVDTDQDGKLDLVKVTIVRPKET-ASGLKVPVIMTASPYYQGTNDVANDKKLHNVDVELYAKPP 240 (767)
T ss_pred ccCcccceEEEEEEeCCCCCCCCCCcceEEEEEECCCcc-CCCCccceEEecCccccCCCCcccccccccCCccccccCC
Confidence 35666666777777663 443 578888888765 333367877742 2320000 0 0
Q ss_pred --------------------CCC-----chhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHH
Q 006375 422 --------------------PAF-----NSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYL 476 (648)
Q Consensus 422 --------------------~~~-----~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l 476 (648)
..| ......|+.+||+|++.|.||.++++..|.. ......+|..++|+||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rGYaVV~~D~RGtg~SeG~~~~-----~~~~E~~D~~~vIeWl 315 (767)
T PRK05371 241 RAQFTPLKTQPRKLPVGPAEESFTHINSYSLNDYFLPRGFAVVYVSGIGTRGSDGCPTT-----GDYQEIESMKAVIDWL 315 (767)
T ss_pred ccccccccccccccCCCccchhhccCcchhHHHHHHhCCeEEEEEcCCCCCCCCCcCcc-----CCHHHHHHHHHHHHHH
Confidence 000 0223688999999999999999887666542 2235679999999999
Q ss_pred HHc--CCCC------------CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccc----
Q 006375 477 IKN--CYCT------------KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW---- 538 (648)
Q Consensus 477 ~~~--~~~d------------~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~---- 538 (648)
..+ .++| .++|+++|.||||+++.++|+..|+.++|+|+.+++.|+...+.....+.....|
T Consensus 316 ~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged 395 (767)
T PRK05371 316 NGRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGED 395 (767)
T ss_pred hhCCccccccccccccccCCCCCeeEEEEEcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcc
Confidence 854 2233 5899999999999999999988888999999999998865433211111000000
Q ss_pred ----cc--------cCC-----C---------------CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchH
Q 006375 539 ----EE--------WGD-----P---------------WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEP 586 (648)
Q Consensus 539 ----~~--------~g~-----~---------------~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~ 586 (648)
.+ .|. + ..+..-+++...++..++.++++| +|++||.+|..|++.++
T Consensus 396 ~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvP-vLlIhGw~D~~V~~~~s 474 (767)
T PRK05371 396 LDVLAELTYSRNLLAGDYLRHNEACEKLLAELTAAQDRKTGDYNDFWDDRNYLKDADKIKAS-VLVVHGLNDWNVKPKQV 474 (767)
T ss_pred hhhHHHHhhhcccCcchhhcchHHHHHHHhhhhhhhhhcCCCccHHHHhCCHhhHhhCCCCC-EEEEeeCCCCCCChHHH
Confidence 00 000 0 000111234556777888889998 99999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 587 AKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 587 ~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
.+++++|++++.+.++++. ..+|...... ...+-...+++||.++|..
T Consensus 475 ~~ly~aL~~~g~pkkL~l~----~g~H~~~~~~-~~~d~~e~~~~Wfd~~LkG 522 (767)
T PRK05371 475 YQWWDALPENGVPKKLFLH----QGGHVYPNNW-QSIDFRDTMNAWFTHKLLG 522 (767)
T ss_pred HHHHHHHHhcCCCeEEEEe----CCCccCCCch-hHHHHHHHHHHHHHhcccc
Confidence 9999999998888776544 4578543221 1122233568999999864
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=160.81 Aligned_cols=236 Identities=16% Similarity=0.135 Sum_probs=149.2
Q ss_pred eCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccC
Q 006375 382 SASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK 461 (648)
Q Consensus 382 ~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 461 (648)
.+.||.++++.+..|.+ .+.|+|+++||.... ...|...+..|+++||.|+++|+||+|....... ....
T Consensus 6 ~~~~g~~l~~~~~~~~~-----~~~~~v~llHG~~~~--~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~---~~~~ 75 (276)
T PHA02857 6 FNLDNDYIYCKYWKPIT-----YPKALVFISHGAGEH--SGRYEELAENISSLGILVFSHDHIGHGRSNGEKM---MIDD 75 (276)
T ss_pred ecCCCCEEEEEeccCCC-----CCCEEEEEeCCCccc--cchHHHHHHHHHhCCCEEEEccCCCCCCCCCccC---CcCC
Confidence 35699999998665532 345899999996433 3346677788888999999999999986532100 0011
Q ss_pred CCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccc-------------ccC
Q 006375 462 KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT-------------MLD 528 (648)
Q Consensus 462 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~-------------~~~ 528 (648)
-...++|+...++++.... ...++.++|+|+||.++..++.++|++++++|+.+|..+.... ...
T Consensus 76 ~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 76 FGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred HHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 1123577777777776542 2367999999999999999999999999999999997653110 000
Q ss_pred CCCC--CCcc----cc---ccc-CCCC------CHHHHHHHHcCC--ccccCCCCCCCeEEEeecCCCCccCCchHHHHH
Q 006375 529 PTIP--LTTA----EW---EEW-GDPW------KEEFYFYMKSYS--PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFV 590 (648)
Q Consensus 529 ~~~~--~~~~----~~---~~~-g~~~------~~~~~~~~~~~s--p~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~ 590 (648)
.... +... .. ..+ .+|. .......+.... ....+.++++| +|+++|++|..||+..+.++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vliv~G~~D~i~~~~~~~~l~ 232 (276)
T PHA02857 154 NKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTP-ILILQGTNNEISDVSGAYYFM 232 (276)
T ss_pred CCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCC-EEEEecCCCCcCChHHHHHHH
Confidence 0000 0000 00 000 1110 000000011111 12346677898 999999999999999999988
Q ss_pred HHHHhcCCCCCeEEEEecCCCCccCCCchHH-HHHHHHHHHHHHHHh
Q 006375 591 AKLREMKTDDNILLFKCELGAGHFSKSGRFE-RLREAAFTYTFLMRA 636 (648)
Q Consensus 591 ~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~-~~~~~~~~~~fl~~~ 636 (648)
+.+.. ..++.+++ ++||.....+.+ +-+...++++||.++
T Consensus 233 ~~~~~---~~~~~~~~---~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 233 QHANC---NREIKIYE---GAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred HHccC---CceEEEeC---CCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 87643 34556665 899977655443 233355778999886
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-15 Score=161.27 Aligned_cols=203 Identities=14% Similarity=0.159 Sum_probs=147.0
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
+..++|||||++|||+...++ ..+||++|+++|+..... ..+....+.||||| .|+|+...+ ...+||.+++.+
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~--~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~--g~~~Iy~~d~~~ 276 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQK--RPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD--GNPEIYVMDLAS 276 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCC--CCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC--CCceEEEEECCC
Confidence 467899999999999987655 578999999999865432 34444569999999 998876532 346799999988
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCEEEEEecc
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRS 239 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~~~~ 239 (648)
+. ...+.. . ......+.|||||++|++.++..+..+||++++.+++ .+.++.... .....|||||++|+|.+..
T Consensus 277 ~~--~~~lt~-~-~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 277 RQ--LSRVTN-H-PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AERVTFVGNYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred CC--eEEccc-C-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCCCccceEECCCCCEEEEEEcc
Confidence 73 233322 1 2233457899999999998877777899999999887 666653221 2234699999999999875
Q ss_pred CCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
+ ..++|+++|+++ +..+.+.....+ .-..+++++..+++...+++...+++++++
T Consensus 352 ~--~~~~l~~~dl~t-g~~~~lt~~~~~-~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 352 D--GNFHVAAQDLQR-GSVRILTDTSLD-ESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred C--CceEEEEEECCC-CCEEEccCCCCC-CCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 3 357899999987 334434332222 234566677788888887888889999887
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=149.27 Aligned_cols=247 Identities=15% Similarity=0.106 Sum_probs=163.4
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 455 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 455 (648)
...-.+++.+|.++-...-.|... ..+.-+|+++|| ++......|...+..|+..||.|+.+|++|+|....-
T Consensus 27 ~~~~~~~n~rG~~lft~~W~p~~~---~~pr~lv~~~HG-~g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl--- 99 (313)
T KOG1455|consen 27 YSESFFTNPRGAKLFTQSWLPLSG---TEPRGLVFLCHG-YGEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGL--- 99 (313)
T ss_pred eeeeeEEcCCCCEeEEEecccCCC---CCCceEEEEEcC-CcccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCCC---
Confidence 445567788898887765555442 245678999999 4555556788888899999999999999999864210
Q ss_pred cccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc--------
Q 006375 456 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML-------- 527 (648)
Q Consensus 456 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~-------- 527 (648)
.+.-..-...++|+..-.+.+..+.--......++|+||||.+++.++.++|+.+.++|+.+|.+-+...+-
T Consensus 100 ~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~ 179 (313)
T KOG1455|consen 100 HAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISI 179 (313)
T ss_pred cccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHH
Confidence 011112224567777777776666444456899999999999999999999999999999999765433220
Q ss_pred ----CCCCCCCc-ccccccCCC--CCHHHHHHHHcCCc----------------------cccCCCCCCCeEEEeecCCC
Q 006375 528 ----DPTIPLTT-AEWEEWGDP--WKEEFYFYMKSYSP----------------------VDNVKAQNYPHILVTAGLND 578 (648)
Q Consensus 528 ----~~~~~~~~-~~~~~~g~~--~~~~~~~~~~~~sp----------------------~~~~~~~~~P~~li~~g~~D 578 (648)
..-+|.+. ..-..-.++ .+++..+. ...+| ..|+.++..| +||+||+.|
T Consensus 180 l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~-~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvP-flilHG~dD 257 (313)
T KOG1455|consen 180 LTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKI-LRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVP-FLILHGTDD 257 (313)
T ss_pred HHHHHHhCCceeecCCccccccccCCHHHHHH-hhcCCceecCCccHHHHHHHHHHHHHHHHhccccccc-EEEEecCCC
Confidence 00011100 000000111 12322211 12233 3567778998 999999999
Q ss_pred CccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC--chHHHHHHHHHHHHHHHHh
Q 006375 579 PRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS--GRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~ 636 (648)
.++.+.-+.++++....+ ++.+.+|+ |.-|.... ...+......++.+||.++
T Consensus 258 ~VTDp~~Sk~Lye~A~S~--DKTlKlYp---Gm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 258 KVTDPKVSKELYEKASSS--DKTLKLYP---GMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cccCcHHHHHHHHhccCC--CCceeccc---cHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 999999999999987654 44455665 88885543 3344344466899999876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-15 Score=159.41 Aligned_cols=252 Identities=13% Similarity=0.115 Sum_probs=166.0
Q ss_pred eEEeCCCCCEEEEEEeCCCCe----EEEEEEEECCCCCeeecccc-CccceeEEecCC-e--EEEEEeCCCCCCceEEEE
Q 006375 85 CFQVSPDNKLVAYAEDTKGDE----IYTVYVIDIETGTPVGKPLV-GVTASVEWAGNE-A--LVYITMDEILRPDKAWLH 156 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e----~~~l~v~dl~~g~~~~~~~~-~~~~~~~WspDg-~--l~y~~~~~~~~~~~l~~~ 156 (648)
.+.++ +++|||+....+.+ ..+||++|.+++..++.+.. .....+.||||| + ++|++... ...+||++
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~--g~~~I~~~ 216 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKL--GVPKIFLG 216 (428)
T ss_pred CCccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccC--CCceEEEE
Confidence 34455 99999998764422 46999999999887765432 334569999999 6 66677643 34689999
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEE--ECCCCC--ceeEeeecccc--eeeeEeecC
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYL--DVSKPE--ELRVLTPRVVG--VDTAASHRG 230 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~--dl~~~~--~~~~l~~~~~~--~~~~~s~dg 230 (648)
++.++. ...+... +.....+.|||||++|++.++..+..++|+. +++++. ..+.++....+ ..+.|||||
T Consensus 217 ~l~~g~--~~~lt~~--~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG 292 (428)
T PRK01029 217 SLENPA--GKKILAL--QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG 292 (428)
T ss_pred ECCCCC--ceEeecC--CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC
Confidence 999874 3333322 2233457999999999998876666778875 555421 25666644322 346799999
Q ss_pred CEEEEEeccCCCCCcEEEEEeCCCC-CcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCC
Q 006375 231 NHFFITRRSDELFNSELLACPVDNT-SETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQG 309 (648)
Q Consensus 231 ~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~ 309 (648)
++|+|.+++++ ..+|++++++.. +..+.+...........++++++.+++....++..+|++++++ ++..+.++.
T Consensus 293 ~~Laf~s~~~g--~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~--~g~~~~Lt~ 368 (428)
T PRK01029 293 TRLVFVSNKDG--RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA--TGRDYQLTT 368 (428)
T ss_pred CEEEEEECCCC--CceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECC--CCCeEEccC
Confidence 99999998643 458999887532 2223233332222344566777888888777777889999987 443333332
Q ss_pred CceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 310 GKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 310 ~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
. ...+....+++|+..++|.... .....+|.+++.+++.
T Consensus 369 ~--------~~~~~~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 369 S--------PENKESPSWAIDSLHLVYSAGN-SNESELYLISLITKKT 407 (428)
T ss_pred C--------CCCccceEECCCCCEEEEEECC-CCCceEEEEECCCCCE
Confidence 1 1122234566788888776554 3446899999988873
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-15 Score=160.00 Aligned_cols=246 Identities=13% Similarity=0.146 Sum_probs=169.1
Q ss_pred CCCEEEEEEeCCCCe--EEEEEEEECCCCCeeeccc-cCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcE
Q 006375 91 DNKLVAYAEDTKGDE--IYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDI 166 (648)
Q Consensus 91 DG~~la~~~~~~G~e--~~~l~v~dl~~g~~~~~~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~ 166 (648)
-..+|||..+..|.. ..+||++|.+++.....+. ......++||||| +|+|++... ...+||++++.++. ..
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~~g~--~~ 239 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLETGQ--RE 239 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECCCCc--EE
Confidence 356899998766533 6799999998877654332 2345569999999 999988643 34679999998873 23
Q ss_pred EEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCEEEEEeccCCCCCc
Q 006375 167 CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNS 245 (648)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~ 245 (648)
.+... +.....+.|||||+.|++.....+..+||++|++++. .+.++.... .....|+|||++|+|.+++.+ ..
T Consensus 240 ~l~~~--~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g--~~ 314 (435)
T PRK05137 240 LVGNF--PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TTRLTDSPAIDTSPSYSPDGSQIVFESDRSG--SP 314 (435)
T ss_pred EeecC--CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc-eEEccCCCCccCceeEcCCCCEEEEEECCCC--CC
Confidence 33222 2233467899999999988776677899999999987 777765432 234679999999999987633 46
Q ss_pred EEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCC
Q 006375 246 ELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPS 325 (648)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~ 325 (648)
+|+++++++ +..+.+...........++++++.+++.....+..++++++++ ++....++.. ..+...
T Consensus 315 ~Iy~~d~~g-~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~--~~~~~~lt~~---------~~~~~p 382 (435)
T PRK05137 315 QLYVMNADG-SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD--GSGERILTSG---------FLVEGP 382 (435)
T ss_pred eEEEEECCC-CCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC--CCceEeccCC---------CCCCCC
Confidence 899999876 3333344333222234466677788877766666788988876 3322222211 123345
Q ss_pred CCcccccEEEEEEeeCCCC--CEEEEEECCCCcE
Q 006375 326 ESVFSSRILRFHYSSLRTP--PSVYDYDMDMGIS 357 (648)
Q Consensus 326 ~~~~~~~~l~~~~ss~~~P--~~~~~~d~~~~~~ 357 (648)
.+++|++.++|........ ..+|.+++.+++.
T Consensus 383 ~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 383 TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred eECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 6778899888877665553 5899999987763
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-16 Score=160.44 Aligned_cols=246 Identities=18% Similarity=0.209 Sum_probs=146.0
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
+...+...+|.++......+. .+.|+||++||..+.. ..|...+..|+++||.|+++|+||+|..+......
T Consensus 31 ~~~~~~~~~g~~l~~~~~~~~------~~~~~vll~HG~~~~~--~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~ 102 (330)
T PRK10749 31 EEAEFTGVDDIPIRFVRFRAP------HHDRVVVICPGRIESY--VKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDP 102 (330)
T ss_pred cceEEEcCCCCEEEEEEccCC------CCCcEEEEECCccchH--HHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCC
Confidence 556666788888777643332 2347899999953322 13445556788899999999999999765432110
Q ss_pred ccc--cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc--------
Q 006375 457 GKF--LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-------- 526 (648)
Q Consensus 457 ~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~-------- 526 (648)
... ..-....+|+.+.++.+... .+..++.++|+||||.++..++.++|+.++++|+.+|........
T Consensus 103 ~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~ 180 (330)
T PRK10749 103 HRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARRI 180 (330)
T ss_pred CcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHHH
Confidence 000 01112234555555544432 234789999999999999999999999999999999865321000
Q ss_pred ---c--CCCC----CCCcccccccC---C--CCCHHHH----HHHHcC---------------------CccccCCCCCC
Q 006375 527 ---L--DPTI----PLTTAEWEEWG---D--PWKEEFY----FYMKSY---------------------SPVDNVKAQNY 567 (648)
Q Consensus 527 ---~--~~~~----~~~~~~~~~~g---~--~~~~~~~----~~~~~~---------------------sp~~~~~~~~~ 567 (648)
. .... ......|.... + ..+++.+ +.+... ....++.+++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 260 (330)
T PRK10749 181 LNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLAGAGDITT 260 (330)
T ss_pred HHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHhhccCCCC
Confidence 0 0000 00000000000 0 0011110 000000 11234566788
Q ss_pred CeEEEeecCCCCccCCchHHHHHHHHHhcCC---CCCeEEEEecCCCCccCCCchHH-HHHHHHHHHHHHHHh
Q 006375 568 PHILVTAGLNDPRVMYSEPAKFVAKLREMKT---DDNILLFKCELGAGHFSKSGRFE-RLREAAFTYTFLMRA 636 (648)
Q Consensus 568 P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~gH~~~~~~~~-~~~~~~~~~~fl~~~ 636 (648)
| +||+||++|..|++..+.+++++++.++. ..++++++ ++||....+... +-....++.+||.++
T Consensus 261 P-~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~---gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 261 P-LLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIK---GAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred C-EEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeC---CCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 8 99999999999999999999999987653 33566665 899965433322 222344678888764
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-15 Score=157.85 Aligned_cols=203 Identities=15% Similarity=0.111 Sum_probs=145.3
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
+..++|||||++|||+....+ ..+|+++|+++|+.... ..++....+.||||| .|+|+...+ ...+||++++.+
T Consensus 206 v~~p~wSpDg~~la~~s~~~~--~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~--g~~~Iy~~d~~~ 281 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERG--RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD--GNPEIYVMDLGS 281 (433)
T ss_pred cccccCCCCCCEEEEEecCCC--CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC--CCceEEEEECCC
Confidence 457899999999999987655 57899999999886543 234455569999999 898876532 346799999988
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc-cceeeeEeecCCEEEEEecc
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-VGVDTAASHRGNHFFITRRS 239 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~-~~~~~~~s~dg~~l~~~~~~ 239 (648)
+. ...+.. . ......+.|||||++|++.++..+..+||++++++++ .+.++... ......|||||++|+|.+..
T Consensus 282 g~--~~~lt~-~-~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~ 356 (433)
T PRK04922 282 RQ--LTRLTN-H-FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-AERLTFQGNYNARASVSPDGKKIAMVHGS 356 (433)
T ss_pred CC--eEECcc-C-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEECC
Confidence 73 233322 1 2233467899999999998877777899999998887 66665322 22345799999999998764
Q ss_pred CCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
...++|+++++.+ +..+.+. +.....-..++++++.+++.....+...|++++++
T Consensus 357 --~~~~~I~v~d~~~-g~~~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 357 --GGQYRIAVMDLST-GSVRTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred --CCceeEEEEECCC-CCeEECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 2457899999876 3333233 33222223556666778877777777889998886
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=160.45 Aligned_cols=229 Identities=20% Similarity=0.209 Sum_probs=151.6
Q ss_pred CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCc-hhH-HHHHHCCCEEEEEccCCCCCCChhhhhccccc
Q 006375 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN-SSR-LSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 460 (648)
Q Consensus 383 s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~-~~~-~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 460 (648)
...+..+++.++.| .. ....+.|+|||+|||.......... ... ..+...|+.|+++|||-..+.
T Consensus 58 ~~~~~~~~~~~y~p-~~-~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~----------- 124 (312)
T COG0657 58 GPSGDGVPVRVYRP-DR-KAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH----------- 124 (312)
T ss_pred CCCCCceeEEEECC-CC-CCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------
Confidence 44555688888887 32 3345689999999987665554433 333 455567999999999987764
Q ss_pred CCCCcHhHHHHHHHHHHHcC---CCCCCeEEEEeeChhHHHHHHHHhhCCC----ceeEEEecCCcccccccccCCCCC-
Q 006375 461 KKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVDVLTTMLDPTIP- 532 (648)
Q Consensus 461 ~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~~~a~v~~~~~~d~~~~~~~~~~~- 532 (648)
.-...++|+.+++.|+.++. .+|+++|+++|+|+||.|++.++.+..+ ..++.++.+|.+|... . .....
T Consensus 125 ~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~-~~~~~~ 202 (312)
T COG0657 125 PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-S-AASLPG 202 (312)
T ss_pred CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-c-ccchhh
Confidence 22356899999999999874 4899999999999999999888776433 5789999999999764 1 11110
Q ss_pred ------CCcccc-----ccc-CCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCC
Q 006375 533 ------LTTAEW-----EEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 600 (648)
Q Consensus 533 ------~~~~~~-----~~~-g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~ 600 (648)
+..... ..| +...+... ...+|+..-.-...||+||++|+.|...+ +++.|.++|+++|++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~spl~~~~~~~lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~ 276 (312)
T COG0657 203 YGEADLLDAAAILAWFADLYLGAAPDRED----PEASPLASDDLSGLPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPV 276 (312)
T ss_pred cCCccccCHHHHHHHHHHHhCcCccccCC----CccCccccccccCCCCEEEEecCCCcchh--HHHHHHHHHHHcCCeE
Confidence 000000 000 11000000 12345543321137889999999999877 9999999999999998
Q ss_pred CeEEEEecCCCCccCCCc-hHHHHHHHHHHHHHHHH
Q 006375 601 NILLFKCELGAGHFSKSG-RFERLREAAFTYTFLMR 635 (648)
Q Consensus 601 ~~~~~~~~~~~gH~~~~~-~~~~~~~~~~~~~fl~~ 635 (648)
++..++ +..|.+... .....+.+..+..|+..
T Consensus 277 ~~~~~~---g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 277 ELRVYP---GMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred EEEEeC---CcceeccccCcHHHHHHHHHHHHHHHH
Confidence 776665 778855221 12223333445566653
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-15 Score=154.08 Aligned_cols=244 Identities=15% Similarity=0.074 Sum_probs=150.6
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 455 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 455 (648)
.....+...++..+.+....|+.. .+.|+||++||..+.. ..|...+..|+++||.|+++|+||+|.....+.
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~~----~~~~~Vl~lHG~~~~~--~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~- 182 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAAG----EMRGILIIIHGLNEHS--GRYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHG- 182 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCCC----CCceEEEEECCchHHH--HHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCC-
Confidence 455556677888888886666432 3468999999965432 225556678888999999999999986543211
Q ss_pred cccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC---ceeEEEecCCcccccccc------
Q 006375 456 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAVPFVDVLTTM------ 526 (648)
Q Consensus 456 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~~~a~v~~~~~~d~~~~~------ 526 (648)
.........+|+.++++++.... +..++.++|+||||.+++.++. +|+ .++++|+.+|.+++....
T Consensus 183 --~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~~~ 257 (395)
T PLN02652 183 --YVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVGAV 257 (395)
T ss_pred --CCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHHHH
Confidence 00111123578888888887542 2347999999999999987765 564 789999999986543210
Q ss_pred ------cCCCCCCCcc------------c-ccccCCCCC-------HHHHHHHHcCC-ccccCCCCCCCeEEEeecCCCC
Q 006375 527 ------LDPTIPLTTA------------E-WEEWGDPWK-------EEFYFYMKSYS-PVDNVKAQNYPHILVTAGLNDP 579 (648)
Q Consensus 527 ------~~~~~~~~~~------------~-~~~~g~~~~-------~~~~~~~~~~s-p~~~~~~~~~P~~li~~g~~D~ 579 (648)
..+...+... . ...+.+|.. ...+..+.... ...++.++++| +||+||++|.
T Consensus 258 ~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vP-vLIi~G~~D~ 336 (395)
T PLN02652 258 APIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVP-FMVLHGTADR 336 (395)
T ss_pred HHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCC-EEEEEeCCCC
Confidence 0000000000 0 000111100 00000000000 12355677898 9999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCc-hHHHHHHHHHHHHHHHHhcCC
Q 006375 580 RVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG-RFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 580 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~~~~~~fl~~~l~~ 639 (648)
.||+..+.++++++... ..++.+++ +++|..... ..+. ...++.+||..+++.
T Consensus 337 vvp~~~a~~l~~~~~~~--~k~l~~~~---ga~H~l~~e~~~e~--v~~~I~~FL~~~~~~ 390 (395)
T PLN02652 337 VTDPLASQDLYNEAASR--HKDIKLYD---GFLHDLLFEPEREE--VGRDIIDWMEKRLDL 390 (395)
T ss_pred CCCHHHHHHHHHhcCCC--CceEEEEC---CCeEEeccCCCHHH--HHHHHHHHHHHHhhc
Confidence 99999999999887543 34455664 889965332 2222 233678999999864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-14 Score=150.31 Aligned_cols=242 Identities=12% Similarity=0.084 Sum_probs=160.3
Q ss_pred CEEEEEEeCCC-CeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEE
Q 006375 93 KLVAYAEDTKG-DEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLY 169 (648)
Q Consensus 93 ~~la~~~~~~G-~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 169 (648)
++|||.....+ ....+||++|.+++.....+ .......++||||| .|+|++... ...+||++++.++. ...+.
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~--~~~l~ 239 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGA--VRQVA 239 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCC--eEEcc
Confidence 78999977543 33679999999987655432 23345679999999 999987532 24579999998763 33333
Q ss_pred eecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCEEEEEeccCCCCCcEEE
Q 006375 170 HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSELL 248 (648)
Q Consensus 170 ~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~l~ 248 (648)
... .....+.|||||++|++.....+..+||++|+++++ .+.++.... .....|+|||+.|+|.+++.+ ..+||
T Consensus 240 ~~~--~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g--~~~Iy 314 (429)
T PRK03629 240 SFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG--RPQVY 314 (429)
T ss_pred CCC--CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEccCCCCCcCceEECCCCCEEEEEeCCCC--CceEE
Confidence 222 222357899999999998766666789999999987 777765432 234679999999999998632 45899
Q ss_pred EEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCc
Q 006375 249 ACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESV 328 (648)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~ 328 (648)
.+++++. ..+.+...........++++++.+++....++...+++++++ ++....|+.. +......++
T Consensus 315 ~~d~~~g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~--~g~~~~Lt~~---------~~~~~p~~S 382 (429)
T PRK03629 315 KVNINGG-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA--TGGVQVLTDT---------FLDETPSIA 382 (429)
T ss_pred EEECCCC-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC--CCCeEEeCCC---------CCCCCceEC
Confidence 9999763 333243332222234456667788877777777788988887 3433333311 111234566
Q ss_pred ccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 329 FSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 329 ~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+|+..+.|.... .....++.+++..+.
T Consensus 383 pDG~~i~~~s~~-~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 383 PNGTMVIYSSSQ-GMGSVLNLVSTDGRF 409 (429)
T ss_pred CCCCEEEEEEcC-CCceEEEEEECCCCC
Confidence 888877665542 223457888875554
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-16 Score=156.76 Aligned_cols=210 Identities=20% Similarity=0.297 Sum_probs=136.2
Q ss_pred CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCch---------hHHHHHHCCCEEEEEccCCCCCCChhhhh
Q 006375 385 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---------SRLSLLDRGFIFAIAQIRGGGELGRQWYE 455 (648)
Q Consensus 385 ~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---------~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 455 (648)
||++|.+.++.| +. ...++.|+||..|+ |+......... ....|+++||+|++.|.||.|+++..|..
T Consensus 1 DGv~L~adv~~P-~~-~~~~~~P~il~~tp-Y~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~ 77 (272)
T PF02129_consen 1 DGVRLAADVYRP-GA-DGGGPFPVILTRTP-YGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDP 77 (272)
T ss_dssp TS-EEEEEEEEE----TTSSSEEEEEEEES-STCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-T
T ss_pred CCCEEEEEEEec-CC-CCCCcccEEEEccC-cCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCcccc
Confidence 789999999999 33 44688999999988 44221100010 11239999999999999999988777753
Q ss_pred cccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCC-CCC-C
Q 006375 456 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP-TIP-L 533 (648)
Q Consensus 456 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~-~~~-~ 533 (648)
. ..+..+|..++|+|+..+.+.| .||+++|.|++|+.+..+|.+.|..++|++..++..|+......+ ... .
T Consensus 78 ~-----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~ 151 (272)
T PF02129_consen 78 M-----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRL 151 (272)
T ss_dssp T-----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBC
T ss_pred C-----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcccc
Confidence 2 4456799999999999997754 799999999999999999997888899999999999987622111 110 0
Q ss_pred C-cccc-------cccCC-C-CC----------------------------------HHHHHHHHcCCccccCCCCCCCe
Q 006375 534 T-TAEW-------EEWGD-P-WK----------------------------------EEFYFYMKSYSPVDNVKAQNYPH 569 (648)
Q Consensus 534 ~-~~~~-------~~~g~-~-~~----------------------------------~~~~~~~~~~sp~~~~~~~~~P~ 569 (648)
. ...| ..... + .. +...+++.+.++..++.++++|
T Consensus 152 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP- 230 (272)
T PF02129_consen 152 GFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVP- 230 (272)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SE-
T ss_pred cchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCC-
Confidence 0 0011 00000 0 00 0011233344445557788998
Q ss_pred EEEeecCCCCccCCchHHHHHHHHHhcC-CCCCeEEE
Q 006375 570 ILVTAGLNDPRVMYSEPAKFVAKLREMK-TDDNILLF 605 (648)
Q Consensus 570 ~li~~g~~D~~v~~~~~~~~~~~l~~~~-~~~~~~~~ 605 (648)
+|+++|..|.... .++.+.+++|+..+ .+.++++-
T Consensus 231 ~l~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liig 266 (272)
T PF02129_consen 231 VLIVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIG 266 (272)
T ss_dssp EEEEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEE
T ss_pred EEEecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEe
Confidence 9999999997666 89999999999887 45455444
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=145.67 Aligned_cols=186 Identities=17% Similarity=0.167 Sum_probs=126.9
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCC----CCChhhhhcccccCCCC-------cHhHHHHH
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGG----ELGRQWYENGKFLKKKN-------TFTDFIAC 472 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g----~~g~~~~~~~~~~~~~~-------~~~D~~~~ 472 (648)
.+.|+||++||..++.. .+......|...++.+.++.++|.. +.|+.|.... .....+ ..+.+.+.
T Consensus 14 ~~~~~vIlLHG~G~~~~--~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~~~ 90 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPV--AMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFIET 90 (232)
T ss_pred CCCcEEEEEeCCCCChH--HHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHHHH
Confidence 45689999999554432 3555666777777666666666632 3356776421 111112 22344556
Q ss_pred HHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHH
Q 006375 473 AEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFY 552 (648)
Q Consensus 473 ~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 552 (648)
++++..+..+++++|+++|+|+||.+++.++.++|+.++++|+.+|.+. .. +.
T Consensus 91 i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~--------~~------------~~------- 143 (232)
T PRK11460 91 VRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA--------SL------------PE------- 143 (232)
T ss_pred HHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc--------cc------------cc-------
Confidence 6777767668899999999999999999999889988888877665321 00 00
Q ss_pred HHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHH
Q 006375 553 MKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTF 632 (648)
Q Consensus 553 ~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~f 632 (648)
....+.| +|++||++|++||++.+++++++|++.+.+.++..++ ++||.... + ++.+..+|
T Consensus 144 ---------~~~~~~p-vli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~---~~gH~i~~---~---~~~~~~~~ 204 (232)
T PRK11460 144 ---------TAPTATT-IHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVE---DLGHAIDP---R---LMQFALDR 204 (232)
T ss_pred ---------cccCCCc-EEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEEC---CCCCCCCH---H---HHHHHHHH
Confidence 0012455 9999999999999999999999999988776666554 88997642 2 33355677
Q ss_pred HHHhcC
Q 006375 633 LMRALS 638 (648)
Q Consensus 633 l~~~l~ 638 (648)
|.+.|.
T Consensus 205 l~~~l~ 210 (232)
T PRK11460 205 LRYTVP 210 (232)
T ss_pred HHHHcc
Confidence 777763
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-15 Score=163.49 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=106.7
Q ss_pred EeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCC-CCCC-chhHHHHHHCCCEEEEEccCCCCCCChhhhhccc
Q 006375 381 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN-DPAF-NSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGK 458 (648)
Q Consensus 381 ~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~-~~~~-~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 458 (648)
+++.||.+|.+.++.|++. ++.|+||++||-..... ...+ ......|+++||+|+++|+||.|+.+..+...+
T Consensus 1 i~~~DG~~L~~~~~~P~~~----~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~~- 75 (550)
T TIGR00976 1 VPMRDGTRLAIDVYRPAGG----GPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLLG- 75 (550)
T ss_pred CcCCCCCEEEEEEEecCCC----CCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEecC-
Confidence 3578999999998888653 57899999998332211 0111 223467889999999999999998765543211
Q ss_pred ccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccc
Q 006375 459 FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 525 (648)
Q Consensus 459 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~ 525 (648)
....+|+.++++|+..+.+.+ .+|+++|+|+||.+++.++.++|+.++|+|+.+++.|+...
T Consensus 76 ----~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~ 137 (550)
T TIGR00976 76 ----SDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRD 137 (550)
T ss_pred ----cccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHh
Confidence 457799999999999988776 69999999999999999999889999999999999987754
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-14 Score=147.89 Aligned_cols=239 Identities=14% Similarity=0.124 Sum_probs=159.8
Q ss_pred CEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEe
Q 006375 93 KLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYH 170 (648)
Q Consensus 93 ~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 170 (648)
.+|||....++ ..+||++|.++...... ........++||||| .|+|+... ....+||++++.++. ...+..
T Consensus 164 ~~iayv~~~~~--~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~--~~~~~I~~~dl~~g~--~~~l~~ 237 (427)
T PRK02889 164 TRIAYVIKTGN--RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFE--SKKPVVYVHDLATGR--RRVVAN 237 (427)
T ss_pred cEEEEEEccCC--ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEcc--CCCcEEEEEECCCCC--EEEeec
Confidence 57999986544 57899999977654433 223345569999999 99998763 334579999998873 233322
Q ss_pred ecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCEEEEEeccCCCCCcEEEE
Q 006375 171 EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSELLA 249 (648)
Q Consensus 171 ~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 249 (648)
. +.....+.|||||++|++..+..+..+||++|++++. .+.++.... .....|+|||++|+|.+++. ...+||.
T Consensus 238 ~--~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~--g~~~Iy~ 312 (427)
T PRK02889 238 F--KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRG--GAPQIYR 312 (427)
T ss_pred C--CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCC--CCcEEEE
Confidence 1 2233467899999999998777777899999998876 677765432 23467999999999998863 3458999
Q ss_pred EeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcc
Q 006375 250 CPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVF 329 (648)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~ 329 (648)
+++++. ..+.++.......-..++++++++++....++...+++++++. +....++.. . ......+++
T Consensus 313 ~~~~~g-~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~--g~~~~lt~~--------~-~~~~p~~sp 380 (427)
T PRK02889 313 MPASGG-AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT--GQVTALTDT--------T-RDESPSFAP 380 (427)
T ss_pred EECCCC-ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC--CCeEEccCC--------C-CccCceECC
Confidence 998763 3332333322222345666777888777666667899998873 333322211 1 112356678
Q ss_pred cccEEEEEEeeCCCCCEEEEEECCCC
Q 006375 330 SSRILRFHYSSLRTPPSVYDYDMDMG 355 (648)
Q Consensus 330 ~~~~l~~~~ss~~~P~~~~~~d~~~~ 355 (648)
++..++|....-. -..+|.++....
T Consensus 381 dg~~l~~~~~~~g-~~~l~~~~~~g~ 405 (427)
T PRK02889 381 NGRYILYATQQGG-RSVLAAVSSDGR 405 (427)
T ss_pred CCCEEEEEEecCC-CEEEEEEECCCC
Confidence 8888887765443 356888887543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-14 Score=151.18 Aligned_cols=159 Identities=16% Similarity=0.215 Sum_probs=118.9
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc-CccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV-GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~-~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
.+.|||||++|||+.+.+| ..+||++|+++++....+.. .....++|+||| +|+|+.... ...+||.+++.++.
T Consensus 266 ~~~wSPDG~~La~~~~~~g--~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~--g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDG--QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG--GKPQIYRVNLASGK 341 (448)
T ss_pred CeeECCCCCEEEEEEeCCC--CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC--CCceEEEEECCCCC
Confidence 6899999999999988776 57999999999987654332 334569999999 898886532 34679999998773
Q ss_pred CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCCC
Q 006375 163 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDEL 242 (648)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~ 242 (648)
...+..+ ..+...+.|||||++|++.+...+..+||++|+++++ .+.++.........|+|||+.|+|.++.+
T Consensus 342 --~~~Lt~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-~~~lt~~~~d~~ps~spdG~~I~~~~~~~-- 414 (448)
T PRK04792 342 --VSRLTFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA-MQVLTSTRLDESPSVAPNGTMVIYSTTYQ-- 414 (448)
T ss_pred --EEEEecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC-eEEccCCCCCCCceECCCCCEEEEEEecC--
Confidence 2333211 2223357899999999998766666789999999987 77776543334457999999999998863
Q ss_pred CCcEEEEEeCCC
Q 006375 243 FNSELLACPVDN 254 (648)
Q Consensus 243 ~~~~l~~~~~~~ 254 (648)
....|+.++.++
T Consensus 415 g~~~l~~~~~~G 426 (448)
T PRK04792 415 GKQVLAAVSIDG 426 (448)
T ss_pred CceEEEEEECCC
Confidence 345789888865
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.8e-14 Score=147.55 Aligned_cols=198 Identities=12% Similarity=0.074 Sum_probs=134.4
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..+.|||||++|||+...++ ..+|+++|+++|+.... ...+....++||||| .|+|+...+ ...+||.+++.
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~--~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~--g~~~Iy~~d~~ 280 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENK--KSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKD--GVLNIYVMGAN 280 (429)
T ss_pred ccccceEcCCCCEEEEEEecCC--CcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecC--CcEEEEEEECC
Confidence 3457999999999999986544 57899999999875432 344444569999999 898876432 23569999987
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEecc
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRS 239 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~ 239 (648)
++. ...+.. . ......+.|||||++|++.++..+..+||.+++.++. .+.+... +....|+|||++|++.+.
T Consensus 281 ~~~--~~~lt~-~-~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-~~~l~~~--~~~~~~SpDG~~ia~~~~- 352 (429)
T PRK01742 281 GGT--PSQLTS-G-AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-ASLVGGR--GYSAQISADGKTLVMING- 352 (429)
T ss_pred CCC--eEeecc-C-CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEecCC--CCCccCCCCCCEEEEEcC-
Confidence 762 233322 2 2234468999999999998877777899999998776 5554322 223459999999988765
Q ss_pred CCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
..++++|+.+. ..+.+... ....-..+++++..+++...+++...+++++.+
T Consensus 353 -----~~i~~~Dl~~g-~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~ 404 (429)
T PRK01742 353 -----DNVVKQDLTSG-STEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSAD 404 (429)
T ss_pred -----CCEEEEECCCC-CeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 24777888763 33323322 222223456666677777666666566777666
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.3e-14 Score=148.42 Aligned_cols=243 Identities=13% Similarity=0.137 Sum_probs=161.5
Q ss_pred CCEEEEEEeCC--CCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEE
Q 006375 92 NKLVAYAEDTK--GDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDIC 167 (648)
Q Consensus 92 G~~la~~~~~~--G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~ 167 (648)
+++|||..... +....+|+++|.+++.....+ .......++||||| .|+|++... ...+||++++.++. ...
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~--~~~~l~~~dl~~g~--~~~ 242 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER--GRSAIYVQDLATGQ--REL 242 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC--CCcEEEEEECCCCC--EEE
Confidence 56788986532 234678999999877655433 23335569999999 999987632 35679999998763 333
Q ss_pred EEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCEEEEEeccCCCCCcE
Q 006375 168 LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSE 246 (648)
Q Consensus 168 ~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~ 246 (648)
+... +.....+.|||||++|++.....+..+||++|+++++ .+.++.... .....|+|||++|+|.+++.+ ..+
T Consensus 243 l~~~--~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g--~~~ 317 (433)
T PRK04922 243 VASF--RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG--RPQ 317 (433)
T ss_pred eccC--CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCC--Cce
Confidence 3222 2233357899999999988766667899999999987 777765432 234679999999999998643 358
Q ss_pred EEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCC
Q 006375 247 LLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSE 326 (648)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~ 326 (648)
||.+++++.. .+.++.......-..++++++.+++....++..+|++++++ ++....++... ......
T Consensus 318 iy~~dl~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~--~g~~~~Lt~~~---------~~~~p~ 385 (433)
T PRK04922 318 IYRVAASGGS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS--TGSVRTLTPGS---------LDESPS 385 (433)
T ss_pred EEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC--CCCeEECCCCC---------CCCCce
Confidence 9999987633 33243332222234566677788877666666689999886 34333333211 112245
Q ss_pred CcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 327 SVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 327 ~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+++++..+.|.... ..-..+|.+++.++.
T Consensus 386 ~spdG~~i~~~s~~-~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 386 FAPNGSMVLYATRE-GGRGVLAAVSTDGRV 414 (433)
T ss_pred ECCCCCEEEEEEec-CCceEEEEEECCCCc
Confidence 67788877776554 334579999986654
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=144.27 Aligned_cols=235 Identities=17% Similarity=0.163 Sum_probs=151.6
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCC---CCCCchhHHHHHH-CCCEEEEEccCCCCCCCh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN---DPAFNSSRLSLLD-RGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~---~~~~~~~~~~l~~-~G~~v~~~~~rG~g~~g~ 451 (648)
..++.+. ....++.+++.|... ....+.|+|||+|||...-. ...|......++. .+.+|+.+|||-..|.
T Consensus 63 ~~dv~~~--~~~~l~vRly~P~~~-~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh-- 137 (336)
T KOG1515|consen 63 SKDVTID--PFTNLPVRLYRPTSS-SSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEH-- 137 (336)
T ss_pred eeeeEec--CCCCeEEEEEcCCCC-CcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCC--
Confidence 3455444 444588898888765 33378999999999854433 3344444555544 4999999999977653
Q ss_pred hhhhcccccCCCCcHhHHHHHHHHHHHc----CCCCCCeEEEEeeChhHHHHHHHHhhC------CCceeEEEecCCccc
Q 006375 452 QWYENGKFLKKKNTFTDFIACAEYLIKN----CYCTKEKLCIEGRSAGGLLIGAVLNMR------PDLFKAAVAAVPFVD 521 (648)
Q Consensus 452 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~----~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~~~a~v~~~~~~d 521 (648)
.-...++|..+|+.|+.++ ..+|++||+|+|.|+||.+|..++.+. +-.+++.|+..|++.
T Consensus 138 ---------~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~ 208 (336)
T KOG1515|consen 138 ---------PFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQ 208 (336)
T ss_pred ---------CCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccC
Confidence 3346789999999999885 568999999999999999998877653 236899999999987
Q ss_pred ccccccCCCCCCCcccccccCCCC-C-HHHHHHHHc-------------CCccc-----cCCCCCCCeEEEeecCCCCcc
Q 006375 522 VLTTMLDPTIPLTTAEWEEWGDPW-K-EEFYFYMKS-------------YSPVD-----NVKAQNYPHILVTAGLNDPRV 581 (648)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~g~~~-~-~~~~~~~~~-------------~sp~~-----~~~~~~~P~~li~~g~~D~~v 581 (648)
....... +. ++...+.+. . +....+++. .+|.. ...-..+|++||+.++.|..
T Consensus 209 ~~~~~~~-e~-----~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L- 281 (336)
T KOG1515|consen 209 GTDRTES-EK-----QQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVL- 281 (336)
T ss_pred CCCCCCH-HH-----HHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhh-
Confidence 5443211 00 000001110 0 011111111 12222 12223788899999999966
Q ss_pred CCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC--c-hHHHHHHHHHHHHHHHH
Q 006375 582 MYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS--G-RFERLREAAFTYTFLMR 635 (648)
Q Consensus 582 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~--~-~~~~~~~~~~~~~fl~~ 635 (648)
..+...|+++|+++|++.+.+.++ ++.|++.. . .....+......+|+.+
T Consensus 282 -~D~~~~Y~~~Lkk~Gv~v~~~~~e---~~~H~~~~~~~~~~~a~~~~~~i~~fi~~ 334 (336)
T KOG1515|consen 282 -RDEGLAYAEKLKKAGVEVTLIHYE---DGFHGFHILDPSSKEAHALMDAIVEFIKS 334 (336)
T ss_pred -hhhhHHHHHHHHHcCCeEEEEEEC---CCeeEEEecCCchhhHHHHHHHHHHHHhh
Confidence 479999999999999998744454 77885421 1 12223333345566654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-13 Score=146.90 Aligned_cols=253 Identities=9% Similarity=0.098 Sum_probs=165.1
Q ss_pred EEEeeEEeCCCCCEEEEEEeCC--CCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTK--GDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~--G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
..+.+.... ..++|||..... +.+.++|+++|.+++...... .......+.||||| +|+|++... ...+||++
T Consensus 152 ~~ltg~~g~-f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~ 228 (430)
T PRK00178 152 EKLTGIKGA-FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQ 228 (430)
T ss_pred HHHhCCCcc-ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEE
Confidence 344444443 566799986532 345789999999987655432 23334569999999 999987642 34579999
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCEEEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFI 235 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~ 235 (648)
++.++. ...+.... .....+.|||||++|++.....+..+||++|+++++ .+.++.... ...+.|+|||++|+|
T Consensus 229 ~l~~g~--~~~l~~~~--g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~~i~f 303 (430)
T PRK00178 229 NLDTGR--REQITNFE--GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGRTLYF 303 (430)
T ss_pred ECCCCC--EEEccCCC--CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEcccCCCCcCCeEECCCCCEEEE
Confidence 998873 23333222 223357899999999998776667899999999987 777765432 234679999999999
Q ss_pred EeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeec
Q 006375 236 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEF 315 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~ 315 (648)
.+++. ...+||.+++.+.. .+.+...........++++++.+++....++...|+++++++ +..+.++..
T Consensus 304 ~s~~~--g~~~iy~~d~~~g~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t--g~~~~lt~~----- 373 (430)
T PRK00178 304 TSDRG--GKPQIYKVNVNGGR-AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR--GSVRILTDT----- 373 (430)
T ss_pred EECCC--CCceEEEEECCCCC-EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC--CCEEEccCC-----
Confidence 98863 34689999987633 332332222222345666778888877766666788888873 333333321
Q ss_pred CCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 316 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
... ....+++++..+.|..... .-..+|.++...+.
T Consensus 374 ---~~~-~~p~~spdg~~i~~~~~~~-g~~~l~~~~~~g~~ 409 (430)
T PRK00178 374 ---SLD-ESPSVAPNGTMLIYATRQQ-GRGVLMLVSINGRV 409 (430)
T ss_pred ---CCC-CCceECCCCCEEEEEEecC-CceEEEEEECCCCc
Confidence 111 1235567888777665432 22468888876544
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=143.80 Aligned_cols=243 Identities=18% Similarity=0.197 Sum_probs=148.5
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
.+..+.+.||.++......+... +..+||++||...... .|...+..|..+||.|+..|.||+|...+ .+.
T Consensus 10 ~~~~~~~~d~~~~~~~~~~~~~~-----~~g~Vvl~HG~~Eh~~--ry~~la~~l~~~G~~V~~~D~RGhG~S~r--~~r 80 (298)
T COG2267 10 TEGYFTGADGTRLRYRTWAAPEP-----PKGVVVLVHGLGEHSG--RYEELADDLAARGFDVYALDLRGHGRSPR--GQR 80 (298)
T ss_pred ccceeecCCCceEEEEeecCCCC-----CCcEEEEecCchHHHH--HHHHHHHHHHhCCCEEEEecCCCCCCCCC--CCc
Confidence 44566778998887764443322 2379999999654432 35556788999999999999999998753 111
Q ss_pred ccccCCCCcHhHHHHHHHHHHHcCC--CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccc--cc------
Q 006375 457 GKFLKKKNTFTDFIACAEYLIKNCY--CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT--TM------ 526 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~~l~~~~~--~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~--~~------ 526 (648)
|. ...++|+.+.++.+++.-. .-..++.++||||||.+++.++.+++..++++|+.+|++.+.. ..
T Consensus 81 g~----~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~ 156 (298)
T COG2267 81 GH----VDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARL 156 (298)
T ss_pred CC----chhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHH
Confidence 11 1225555555555544321 1247999999999999999999999999999999999988762 00
Q ss_pred -------cCCCCCCCcc-c-ccccCCC-CCHHHHHHH--------------------HcCC-c-cccCCCCCCCeEEEee
Q 006375 527 -------LDPTIPLTTA-E-WEEWGDP-WKEEFYFYM--------------------KSYS-P-VDNVKAQNYPHILVTA 574 (648)
Q Consensus 527 -------~~~~~~~~~~-~-~~~~g~~-~~~~~~~~~--------------------~~~s-p-~~~~~~~~~P~~li~~ 574 (648)
..+.++.... . ....... .+++.-+.+ .... + .....+++.| +||++
T Consensus 157 ~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~P-vLll~ 235 (298)
T COG2267 157 ALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALP-VLLLQ 235 (298)
T ss_pred hcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCC-EEEEe
Confidence 0011111110 0 0000000 122211111 1111 1 1223445888 99999
Q ss_pred cCCCCccC-CchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCc-hHHHHHHHHHHHHHHHHhcC
Q 006375 575 GLNDPRVM-YSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG-RFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 575 g~~D~~v~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~~~~~~fl~~~l~ 638 (648)
|++|..|+ .....++++++.... .++++++ ++.|....+ ...+-+...++.+||.+++.
T Consensus 236 g~~D~vv~~~~~~~~~~~~~~~~~--~~~~~~~---g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 236 GGDDRVVDNVEGLARFFERAGSPD--KELKVIP---GAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred cCCCccccCcHHHHHHHHhcCCCC--ceEEecC---CcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 99999999 577777776665433 3556665 889954322 22123344567899988764
|
|
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.8e-15 Score=130.88 Aligned_cols=234 Identities=17% Similarity=0.140 Sum_probs=159.6
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhH-HHHHHCCCEEEEEccCCCCCCCh
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSR-LSLLDRGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~-~~l~~~G~~v~~~~~rG~g~~g~ 451 (648)
++.-+++...+.|..++.++++..+ ...|++|++|+..|.... +...+ ..+.+.+..|++++|||=|..-.
T Consensus 51 n~pye~i~l~T~D~vtL~a~~~~~E------~S~pTlLyfh~NAGNmGh--r~~i~~~fy~~l~mnv~ivsYRGYG~S~G 122 (300)
T KOG4391|consen 51 NMPYERIELRTRDKVTLDAYLMLSE------SSRPTLLYFHANAGNMGH--RLPIARVFYVNLKMNVLIVSYRGYGKSEG 122 (300)
T ss_pred CCCceEEEEEcCcceeEeeeeeccc------CCCceEEEEccCCCcccc--hhhHHHHHHHHcCceEEEEEeeccccCCC
Confidence 4456899999999999999988722 258999999996654332 22333 35566799999999997553322
Q ss_pred hhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCC
Q 006375 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI 531 (648)
Q Consensus 452 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~ 531 (648)
.-.+. .-.-|-.++++||..+...|..+|.+.|.|.||..|..++....+++.|+|+..-|+.+-..+..--.
T Consensus 123 spsE~-------GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~ 195 (300)
T KOG4391|consen 123 SPSEE-------GLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVF 195 (300)
T ss_pred Ccccc-------ceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheec
Confidence 22222 23368999999999999999999999999999999999999988999999999877765332211011
Q ss_pred CCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCC
Q 006375 532 PLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 611 (648)
Q Consensus 532 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 611 (648)
|+.......+ .++ ..++.+..+..-+.| .|++.|..|..|||-+-+++++...... +++..|+ ++
T Consensus 196 p~~~k~i~~l-------c~k--n~~~S~~ki~~~~~P-~LFiSGlkDelVPP~~Mr~Ly~~c~S~~--Krl~eFP---~g 260 (300)
T KOG4391|consen 196 PFPMKYIPLL-------CYK--NKWLSYRKIGQCRMP-FLFISGLKDELVPPVMMRQLYELCPSRT--KRLAEFP---DG 260 (300)
T ss_pred cchhhHHHHH-------HHH--hhhcchhhhccccCc-eEEeecCccccCCcHHHHHHHHhCchhh--hhheeCC---CC
Confidence 1110000000 000 134555566666788 9999999999999999999998876543 3455665 88
Q ss_pred CccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 612 GHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 612 gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
.|....-..-.++. +-+||.+.-..
T Consensus 261 tHNDT~i~dGYfq~---i~dFlaE~~~~ 285 (300)
T KOG4391|consen 261 THNDTWICDGYFQA---IEDFLAEVVKS 285 (300)
T ss_pred ccCceEEeccHHHH---HHHHHHHhccC
Confidence 89653322222332 23677776543
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=147.27 Aligned_cols=244 Identities=16% Similarity=0.141 Sum_probs=141.4
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
++..++..||..+.......+. ...+.|+||++||..+..........+..|.++||.|+++|+||.|+.......
T Consensus 32 ~~~~~~~~dg~~~~l~w~~~~~---~~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~- 107 (324)
T PRK10985 32 YWQRLELPDGDFVDLAWSEDPA---QARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHR- 107 (324)
T ss_pred ceeEEECCCCCEEEEecCCCCc---cCCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcc-
Confidence 3344667788776654332111 123569999999976554332223345678889999999999998754322111
Q ss_pred ccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCc--eeEEEecCCcccccccc--cCC---
Q 006375 457 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL--FKAAVAAVPFVDVLTTM--LDP--- 529 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~--~~a~v~~~~~~d~~~~~--~~~--- 529 (648)
.......+|+.++++++.++. ...++.++|+||||.+++.++.++++. +.++|+.++..|+.... +..
T Consensus 108 ---~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~ 182 (324)
T PRK10985 108 ---IYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFS 182 (324)
T ss_pred ---eECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHH
Confidence 111234689999999998763 236799999999999888777776543 77777777765532110 000
Q ss_pred ------------------------CCCCCc------cccccc----CCC--CCHHHHHHHHcCCccccCCCCCCCeEEEe
Q 006375 530 ------------------------TIPLTT------AEWEEW----GDP--WKEEFYFYMKSYSPVDNVKAQNYPHILVT 573 (648)
Q Consensus 530 ------------------------~~~~~~------~~~~~~----g~~--~~~~~~~~~~~~sp~~~~~~~~~P~~li~ 573 (648)
..+... ....+| ..+ ......+++...++...++++++| +|++
T Consensus 183 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~~P-~lii 261 (324)
T PRK10985 183 RVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQIRKP-TLII 261 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCCCCC-EEEE
Confidence 000000 000011 011 011123344455666667788998 9999
Q ss_pred ecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCc----hHHHHHHHHHHHHHHHHhcC
Q 006375 574 AGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG----RFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 574 ~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~~fl~~~l~ 638 (648)
+|++|+.+++.....+.+ .....+++++ +++||..... ....|-+ ..+.+||...++
T Consensus 262 ~g~~D~~~~~~~~~~~~~----~~~~~~~~~~---~~~GH~~~~~g~~~~~~~w~~-~~~~~~~~~~~~ 322 (324)
T PRK10985 262 HAKDDPFMTHEVIPKPES----LPPNVEYQLT---EHGGHVGFVGGTLLKPQMWLE-QRIPDWLTTYLE 322 (324)
T ss_pred ecCCCCCCChhhChHHHH----hCCCeEEEEC---CCCCceeeCCCCCCCCCccHH-HHHHHHHHHhhc
Confidence 999999998765544422 1112233333 3889954321 1222333 246788876654
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=136.12 Aligned_cols=194 Identities=18% Similarity=0.179 Sum_probs=121.4
Q ss_pred EEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHC-CCEEEEEccCCCCCCChhhhhc-ccccCCCCcHhH
Q 006375 391 ICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYEN-GKFLKKKNTFTD 468 (648)
Q Consensus 391 ~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~-~~~~~~~~~~~D 468 (648)
..|+.|+.. +.++.|+||++||+.+......-...+..++++ ||+|+.|+-.........|.-. ........+...
T Consensus 3 Y~lYvP~~~--~~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~ 80 (220)
T PF10503_consen 3 YRLYVPPGA--PRGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAF 80 (220)
T ss_pred EEEecCCCC--CCCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccchhh
Confidence 456677754 335789999999986654321111224567765 9999999864332233333211 112223345566
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHH
Q 006375 469 FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEE 548 (648)
Q Consensus 469 ~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~ 548 (648)
+.+.++++..+..+|++||.++|.|+||.|+..++..+||+|+|+.+.+|..--... + .. .......-|....+.
T Consensus 81 i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~--~-~~--~a~~~m~~g~~~~p~ 155 (220)
T PF10503_consen 81 IAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAA--S-GA--SALSAMRSGPRPAPA 155 (220)
T ss_pred HHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccccccccc--C-cc--cHHHHhhCCCCCChH
Confidence 778899999999999999999999999999999999999999998888775321100 0 00 000000112222222
Q ss_pred HHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhc
Q 006375 549 FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREM 596 (648)
Q Consensus 549 ~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~ 596 (648)
........+.. . ..+| ++|+||+.|..|.+....++.+.+...
T Consensus 156 ~~~~a~~~~g~--~--~~~P-~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 156 AAWGARSDAGA--Y--PGYP-RIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred HHHHhhhhccC--C--CCCC-EEEEecCCCCccCcchHHHHHHHHHHc
Confidence 21111111110 1 1356 889999999999999999998888754
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-15 Score=145.11 Aligned_cols=187 Identities=21% Similarity=0.254 Sum_probs=120.8
Q ss_pred EEEecCCCCCCCCCCCc-hhHHHHHH-CCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc---CCCC
Q 006375 409 LLYGYGSYEICNDPAFN-SSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN---CYCT 483 (648)
Q Consensus 409 vl~~hGg~~~~~~~~~~-~~~~~l~~-~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d 483 (648)
||++|||.......... .....+++ +|++|+++|||-..+. .-...++|+.++++|+.++ ...|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~-----------~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEA-----------PFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTS-----------STTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccccc-----------cccccccccccceeeecccccccccc
Confidence 79999987765544333 33456665 7999999999976542 2235689999999999987 3478
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCC----ceeEEEecCCcccccccc---c-----CCCCCCC-cccc----cccCCCCC
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVDVLTTM---L-----DPTIPLT-TAEW----EEWGDPWK 546 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~----~~~a~v~~~~~~d~~~~~---~-----~~~~~~~-~~~~----~~~g~~~~ 546 (648)
+++|+++|.|+||.|++.++.+..+ .++++++.+|.+|+.... . ....+.. .... ..+- +..
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 148 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFWKLYL-PGS 148 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHHHHHH-STG
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccccccccccccccccccccccccccc-ccc
Confidence 9999999999999999888875322 489999999998871110 0 0000110 0000 0010 000
Q ss_pred HHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccC
Q 006375 547 EEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 615 (648)
Q Consensus 547 ~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~ 615 (648)
... -...+|+..-...+.||++|++|+.|..+ .++.+|+++|++.|+++++++++ +.+|..
T Consensus 149 ~~~---~~~~sp~~~~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~---g~~H~f 209 (211)
T PF07859_consen 149 DRD---DPLASPLNASDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYP---GMPHGF 209 (211)
T ss_dssp GTT---STTTSGGGSSCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEET---TEETTG
T ss_pred ccc---ccccccccccccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEEC---CCeEEe
Confidence 000 01346665512226889999999999775 58999999999999988777775 788853
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=149.34 Aligned_cols=248 Identities=15% Similarity=0.140 Sum_probs=144.8
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 454 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 454 (648)
..++..+...||..+....+.+... ......|+||++||..+.+....+......++++||.|+++|+||.|+....
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~-~~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~-- 146 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDR-ALPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVT-- 146 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccc-cCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC--
Confidence 3455567778988777654432211 1223468999999976654432122334566789999999999998865321
Q ss_pred hcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCc--eeEEEecCCcccccccc--cCCC
Q 006375 455 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL--FKAAVAAVPFVDVLTTM--LDPT 530 (648)
Q Consensus 455 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~--~~a~v~~~~~~d~~~~~--~~~~ 530 (648)
..........+|+.+++++|..+. ...++.++|+|+||.+++.++.++|+. +.++++.++..|+.... +...
T Consensus 147 --~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~ 222 (388)
T PLN02511 147 --TPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKG 222 (388)
T ss_pred --CcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhcc
Confidence 011112245689999999998763 235899999999999999999999886 67766666555531000 0000
Q ss_pred C--------------------------C--C---------Ccccccc-cCCC--CCHHHHHHHHcCCccccCCCCCCCeE
Q 006375 531 I--------------------------P--L---------TTAEWEE-WGDP--WKEEFYFYMKSYSPVDNVKAQNYPHI 570 (648)
Q Consensus 531 ~--------------------------~--~---------~~~~~~~-~g~~--~~~~~~~~~~~~sp~~~~~~~~~P~~ 570 (648)
. + + ...+|.+ +..+ ......+++...|+...+.++++| +
T Consensus 223 ~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~~~~L~~I~vP-t 301 (388)
T PLN02511 223 FNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSSSDSIKHVRVP-L 301 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCchhhhccCCCC-e
Confidence 0 0 0 0000000 0000 000111233455677788889999 9
Q ss_pred EEeecCCCCccCCchH-HHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHH------HHHHHHHHHHHHHhcCC
Q 006375 571 LVTAGLNDPRVMYSEP-AKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFER------LREAAFTYTFLMRALSM 639 (648)
Q Consensus 571 li~~g~~D~~v~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~------~~~~~~~~~fl~~~l~~ 639 (648)
|+++|.+|+.+|.... ....+ .....+++++ +++||....+.... +++ .+.+||......
T Consensus 302 LiI~g~dDpi~p~~~~~~~~~~----~~p~~~l~~~---~~gGH~~~~E~p~~~~~~~w~~~--~i~~Fl~~~~~~ 368 (388)
T PLN02511 302 LCIQAANDPIAPARGIPREDIK----ANPNCLLIVT---PSGGHLGWVAGPEAPFGAPWTDP--VVMEFLEALEEG 368 (388)
T ss_pred EEEEcCCCCcCCcccCcHhHHh----cCCCEEEEEC---CCcceeccccCCCCCCCCccHHH--HHHHHHHHHHHh
Confidence 9999999999987543 22222 1222333344 38999665443321 122 456777765533
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-14 Score=143.35 Aligned_cols=239 Identities=19% Similarity=0.211 Sum_probs=139.0
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChh
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 452 (648)
.+..+++.++-.+ .+|++++..|+. +++.|+||++=|.-+.. ...+......|+.+|++++.+|.+|.|... .
T Consensus 162 ~~~i~~v~iP~eg-~~I~g~LhlP~~----~~p~P~VIv~gGlDs~q-eD~~~l~~~~l~~rGiA~LtvDmPG~G~s~-~ 234 (411)
T PF06500_consen 162 DYPIEEVEIPFEG-KTIPGYLHLPSG----EKPYPTVIVCGGLDSLQ-EDLYRLFRDYLAPRGIAMLTVDMPGQGESP-K 234 (411)
T ss_dssp SSEEEEEEEEETT-CEEEEEEEESSS----SS-EEEEEEE--TTS-G-GGGHHHHHCCCHHCT-EEEEE--TTSGGGT-T
T ss_pred CCCcEEEEEeeCC-cEEEEEEEcCCC----CCCCCEEEEeCCcchhH-HHHHHHHHHHHHhCCCEEEEEccCCCcccc-c
Confidence 4567888888655 789999887764 36789888875533222 111122223578899999999999988642 2
Q ss_pred hhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccc-cccc-ccCCC
Q 006375 453 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD-VLTT-MLDPT 530 (648)
Q Consensus 453 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d-~~~~-~~~~~ 530 (648)
|. .. +..-.=..++++||...+++|..||+++|.|+||+.|.++|..++++++|+|+..|+++ +++. .....
T Consensus 235 ~~-----l~-~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~~ 308 (411)
T PF06500_consen 235 WP-----LT-QDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQR 308 (411)
T ss_dssp T------S--S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHTT
T ss_pred CC-----CC-cCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHhc
Confidence 22 11 11123356889999999999999999999999999999999877889999998887643 3321 11112
Q ss_pred CCCCccc-c-cccCCC--CCHHHHHHHHcCCcccc--C--CCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCe
Q 006375 531 IPLTTAE-W-EEWGDP--WKEEFYFYMKSYSPVDN--V--KAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 602 (648)
Q Consensus 531 ~~~~~~~-~-~~~g~~--~~~~~~~~~~~~sp~~~--~--~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~ 602 (648)
.|..... + ...|.. .+......+..||-..+ + ++..+| +|.+.+++|+++|.+++.-++ ..+.+.+.
T Consensus 309 ~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~p-lL~i~~~~D~v~P~eD~~lia----~~s~~gk~ 383 (411)
T PF06500_consen 309 VPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTP-LLAINGEDDPVSPIEDSRLIA----ESSTDGKA 383 (411)
T ss_dssp S-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS--EEEEEETT-SSS-HHHHHHHH----HTBTT-EE
T ss_pred CCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcc-eEEeecCCCCCCCHHHHHHHH----hcCCCCce
Confidence 3321111 1 233533 23333345677887543 3 444677 999999999999987764443 33445556
Q ss_pred EEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 603 LLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 603 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
..++. +.-|.+ ..+ .+..++.||.++|
T Consensus 384 ~~~~~--~~~~~g---y~~---al~~~~~Wl~~~l 410 (411)
T PF06500_consen 384 LRIPS--KPLHMG---YPQ---ALDEIYKWLEDKL 410 (411)
T ss_dssp EEE-S--SSHHHH---HHH---HHHHHHHHHHHHH
T ss_pred eecCC--Cccccc---hHH---HHHHHHHHHHHhc
Confidence 66662 222422 222 2335689998875
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=143.29 Aligned_cols=209 Identities=15% Similarity=0.136 Sum_probs=121.6
Q ss_pred CcEEEEecCCCCCCCCCC-CchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
.|.||++||.......+. +...+..+++.||.|+++|+||.|........ . .......+|+.+.++.+ +.
T Consensus 30 ~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~--~-~~~~~~~~~l~~~l~~l------~~ 100 (282)
T TIGR03343 30 GEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMD--E-QRGLVNARAVKGLMDAL------DI 100 (282)
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCc--c-cccchhHHHHHHHHHHc------CC
Confidence 467999999544332221 11223466778999999999998865332110 0 00001234444433332 44
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccC-C-----------CCCCCccccc----cc-CCC---
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD-P-----------TIPLTTAEWE----EW-GDP--- 544 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~-~-----------~~~~~~~~~~----~~-g~~--- 544 (648)
+++.++|+||||.++..++.++|++++++|+.+|.......... + ..+. ...+. .+ -++
T Consensus 101 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 179 (282)
T TIGR03343 101 EKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPS-YETLKQMLNVFLFDQSLI 179 (282)
T ss_pred CCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCC-HHHHHHHHhhCccCcccC
Confidence 79999999999999999999999999999988764211000000 0 0000 00000 00 000
Q ss_pred -------------CCHHHH-HHHHc--------CCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCe
Q 006375 545 -------------WKEEFY-FYMKS--------YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 602 (648)
Q Consensus 545 -------------~~~~~~-~~~~~--------~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~ 602 (648)
..+... ..+.. +.....++++++| +|+++|++|..|++..+.++.+.+. ..++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vlli~G~~D~~v~~~~~~~~~~~~~----~~~~ 254 (282)
T TIGR03343 180 TEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAK-TLVTWGRDDRFVPLDHGLKLLWNMP----DAQL 254 (282)
T ss_pred cHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCC-EEEEEccCCCcCCchhHHHHHHhCC----CCEE
Confidence 001111 11111 1112345677898 9999999999999988888877764 3455
Q ss_pred EEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 603 LLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 603 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
++++ ++||+....+.+.+.+ .+.+||.
T Consensus 255 ~~i~---~agH~~~~e~p~~~~~--~i~~fl~ 281 (282)
T TIGR03343 255 HVFS---RCGHWAQWEHADAFNR--LVIDFLR 281 (282)
T ss_pred EEeC---CCCcCCcccCHHHHHH--HHHHHhh
Confidence 6665 8999887776665544 4466764
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-14 Score=138.66 Aligned_cols=207 Identities=17% Similarity=0.196 Sum_probs=123.7
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
+.|+||++||..+... .|...+. .+.+||.|+++|+||.|...... .....++|....+..+++. .+.
T Consensus 12 ~~~~iv~lhG~~~~~~--~~~~~~~-~l~~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~~~~~i~~--~~~ 79 (257)
T TIGR03611 12 DAPVVVLSSGLGGSGS--YWAPQLD-VLTQRFHVVTYDHRGTGRSPGEL-------PPGYSIAHMADDVLQLLDA--LNI 79 (257)
T ss_pred CCCEEEEEcCCCcchh--HHHHHHH-HHHhccEEEEEcCCCCCCCCCCC-------cccCCHHHHHHHHHHHHHH--hCC
Confidence 4689999999655432 2333333 34568999999999988764321 1112445555444444433 245
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc-----------cCCCCC---------CCcccc-cc---
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-----------LDPTIP---------LTTAEW-EE--- 540 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~-----------~~~~~~---------~~~~~~-~~--- 540 (648)
.++.++|+|+||.++..++.++|+.++++|+..++.+..... ...... .....| ..
T Consensus 80 ~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (257)
T TIGR03611 80 ERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENAA 159 (257)
T ss_pred CcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccch
Confidence 789999999999999999999999999999887754321000 000000 000000 00
Q ss_pred ---------cCCC-CCHH---HHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEe
Q 006375 541 ---------WGDP-WKEE---FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKC 607 (648)
Q Consensus 541 ---------~g~~-~~~~---~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (648)
.... .... ....+..++....++++++| +|+++|++|..+|+.+++++++.+.. .+.+.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~- 233 (257)
T TIGR03611 160 RLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHP-VLLIANRDDMLVPYTQSLRLAAALPN----AQLKLLP- 233 (257)
T ss_pred hhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCcc-EEEEecCcCcccCHHHHHHHHHhcCC----ceEEEEC-
Confidence 0000 0000 11122334444556677888 99999999999999998888876642 3344554
Q ss_pred cCCCCccCCCchHHHHHHHHHHHHHH
Q 006375 608 ELGAGHFSKSGRFERLREAAFTYTFL 633 (648)
Q Consensus 608 ~~~~gH~~~~~~~~~~~~~~~~~~fl 633 (648)
++||.......+.+.+ .+.+||
T Consensus 234 --~~gH~~~~~~~~~~~~--~i~~fl 255 (257)
T TIGR03611 234 --YGGHASNVTDPETFNR--ALLDFL 255 (257)
T ss_pred --CCCCCccccCHHHHHH--HHHHHh
Confidence 7899765555543333 345665
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=128.74 Aligned_cols=145 Identities=19% Similarity=0.296 Sum_probs=105.9
Q ss_pred EEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeE
Q 006375 408 LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKL 487 (648)
Q Consensus 408 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i 487 (648)
+||++||+.+. ...|...+..|+++||.|+.+|+|+.+.... . .++..+++++.... .|+++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~-~~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDSDG--A------------DAVERVLADIRAGY-PDPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTSHH--S------------HHHHHHHHHHHHHH-CTCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCccch--h------------HHHHHHHHHHHhhc-CCCCcE
Confidence 58999997654 3346677789999999999999998876511 1 25555555553322 288999
Q ss_pred EEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCC
Q 006375 488 CIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNY 567 (648)
Q Consensus 488 ~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~ 567 (648)
+++|+|+||.++..++.++ ..++++|+..|+.+. . .+.+.+.
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~~----------------~---------------------~~~~~~~ 105 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPDS----------------E---------------------DLAKIRI 105 (145)
T ss_dssp EEEEETHHHHHHHHHHHHS-TTESEEEEESESSGC----------------H---------------------HHTTTTS
T ss_pred EEEEEccCcHHHHHHhhhc-cceeEEEEecCccch----------------h---------------------hhhccCC
Confidence 9999999999999999987 579999999983110 0 0112334
Q ss_pred CeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCcc
Q 006375 568 PHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHF 614 (648)
Q Consensus 568 P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~ 614 (648)
| +|+++|++|+.+++.+..+++++++ .+.+++.++ +++|+
T Consensus 106 p-v~~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~---g~~H~ 145 (145)
T PF12695_consen 106 P-VLFIHGENDPLVPPEQVRRLYEALP---GPKELYIIP---GAGHF 145 (145)
T ss_dssp E-EEEEEETT-SSSHHHHHHHHHHHHC---SSEEEEEET---TS-TT
T ss_pred c-EEEEEECCCCcCCHHHHHHHHHHcC---CCcEEEEeC---CCcCc
Confidence 5 9999999999999999999999887 344555554 88984
|
... |
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-15 Score=148.53 Aligned_cols=143 Identities=19% Similarity=0.187 Sum_probs=91.2
Q ss_pred CCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCC----CCC---------C---CchhHHHHHHCC
Q 006375 372 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC----NDP---------A---FNSSRLSLLDRG 435 (648)
Q Consensus 372 ~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~----~~~---------~---~~~~~~~l~~~G 435 (648)
..|..|.+.+.+.++..+|++++.|++. .++.|+||++||-.+.. ..+ . .......|+.+|
T Consensus 84 dGY~~EKv~f~~~p~~~vpaylLvPd~~---~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~G 160 (390)
T PF12715_consen 84 DGYTREKVEFNTTPGSRVPAYLLVPDGA---KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRG 160 (390)
T ss_dssp TTEEEEEEEE--STTB-EEEEEEEETT-----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTT
T ss_pred CCeEEEEEEEEccCCeeEEEEEEecCCC---CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCC
Confidence 4688999999999999999999999874 47899999999821110 000 0 112356899999
Q ss_pred CEEEEEccCCCCCCChhhh-----------------hcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHH
Q 006375 436 FIFAIAQIRGGGELGRQWY-----------------ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLL 498 (648)
Q Consensus 436 ~~v~~~~~rG~g~~g~~~~-----------------~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l 498 (648)
|+|+++|.+|-|+.|..=+ ..|....+...++| ..+++||..+..+|++||+++|+||||+.
T Consensus 161 YVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~dd-mr~lDfL~slpeVD~~RIG~~GfSmGg~~ 239 (390)
T PF12715_consen 161 YVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDD-MRALDFLASLPEVDPDRIGCMGFSMGGYR 239 (390)
T ss_dssp SEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHH-HHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred CEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHH-HHHHHHHhcCcccCccceEEEeecccHHH
Confidence 9999999999887654211 11111112234455 55999999999999999999999999999
Q ss_pred HHHHHhhCCCceeEEEecCCc
Q 006375 499 IGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 499 ~~~~~~~~p~~~~a~v~~~~~ 519 (648)
+..+++..+ +++|+|+.+-+
T Consensus 240 a~~LaALDd-RIka~v~~~~l 259 (390)
T PF12715_consen 240 AWWLAALDD-RIKATVANGYL 259 (390)
T ss_dssp HHHHHHH-T-T--EEEEES-B
T ss_pred HHHHHHcch-hhHhHhhhhhh
Confidence 998888764 67887766543
|
|
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.3e-13 Score=135.12 Aligned_cols=238 Identities=16% Similarity=0.162 Sum_probs=134.9
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 455 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 455 (648)
.+.+.+...+|.++...+. ..+ . ...|.||++||.++.. ..|...+..|.++||.|+++|.||.|......
T Consensus 21 ~~~~~~~~~~~~~~~i~y~-~~G--~--~~~~~lvliHG~~~~~--~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~-- 91 (302)
T PRK00870 21 PHYVDVDDGDGGPLRMHYV-DEG--P--ADGPPVLLLHGEPSWS--YLYRKMIPILAAAGHRVIAPDLIGFGRSDKPT-- 91 (302)
T ss_pred ceeEeecCCCCceEEEEEE-ecC--C--CCCCEEEEECCCCCch--hhHHHHHHHHHhCCCEEEEECCCCCCCCCCCC--
Confidence 4556666556665554422 222 1 1247899999965433 23566666777789999999999988653211
Q ss_pred cccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccc--------ccc
Q 006375 456 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT--------TML 527 (648)
Q Consensus 456 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~--------~~~ 527 (648)
.....+++++.+.+..++++ .+.+++.++|||+||.++..++.++|++++++|+.++..-... ...
T Consensus 92 ----~~~~~~~~~~a~~l~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 165 (302)
T PRK00870 92 ----RREDYTYARHVEWMRSWFEQ--LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAWR 165 (302)
T ss_pred ----CcccCCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhhh
Confidence 11123456666555555543 2336899999999999999999999999999998875321000 000
Q ss_pred C--CCCCC-Ccccc--------------cccCCCC-CHH---HHHHH---HcCCc-----------cccCCCCCCCeEEE
Q 006375 528 D--PTIPL-TTAEW--------------EEWGDPW-KEE---FYFYM---KSYSP-----------VDNVKAQNYPHILV 572 (648)
Q Consensus 528 ~--~~~~~-~~~~~--------------~~~g~~~-~~~---~~~~~---~~~sp-----------~~~~~~~~~P~~li 572 (648)
. ...+. ....+ ..+..+. ... ....+ ....+ ...+.++++| +|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~li 244 (302)
T PRK00870 166 AFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKP-FLT 244 (302)
T ss_pred cccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCc-eEE
Confidence 0 00000 00000 0111110 000 00000 00000 0234667898 999
Q ss_pred eecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHh
Q 006375 573 TAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 573 ~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 636 (648)
++|++|+.+|... +++.+.+.... ...+++++ ++||+......+.+.. .+..||.++
T Consensus 245 i~G~~D~~~~~~~-~~~~~~~~~~~-~~~~~~i~---~~gH~~~~e~p~~~~~--~l~~fl~~~ 301 (302)
T PRK00870 245 AFSDSDPITGGGD-AILQKRIPGAA-GQPHPTIK---GAGHFLQEDSGEELAE--AVLEFIRAT 301 (302)
T ss_pred EecCCCCcccCch-HHHHhhccccc-ccceeeec---CCCccchhhChHHHHH--HHHHHHhcC
Confidence 9999999999755 66666555321 12244555 8899876555554433 456777653
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.2e-14 Score=129.78 Aligned_cols=178 Identities=19% Similarity=0.163 Sum_probs=121.8
Q ss_pred CCCeEEeEEEEEeeCccccCCCC-cEEEEecCCCCCCCCCCCc----hhHHHHHH--CCCEEEEEccCCCCCCChhhhhc
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSD-PLLLYGYGSYEICNDPAFN----SSRLSLLD--RGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~-P~vl~~hGg~~~~~~~~~~----~~~~~l~~--~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
..|.+++..++.|++. .+++++ |+||++||+...+.+..-. ..+..|+. -++-|++|.|- .-+.+
T Consensus 169 ~tgneLkYrly~Pkdy-~pdkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~------~if~d- 240 (387)
T COG4099 169 STGNELKYRLYTPKDY-APDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYN------PIFAD- 240 (387)
T ss_pred ccCceeeEEEeccccc-CCCCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEccccc------ccccc-
Confidence 4577899999999998 788887 9999999975544332100 00111111 13345555421 11111
Q ss_pred ccccCCCCcHhHHHHHHH-HHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCc
Q 006375 457 GKFLKKKNTFTDFIACAE-YLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTT 535 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 535 (648)
...+..+.....++.++ -|.++..+|.+||.+.|.|+||+.+.+++.++|+.|+|+++.+|--|-.
T Consensus 241 -~e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v------------ 307 (387)
T COG4099 241 -SEEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRV------------ 307 (387)
T ss_pred -cccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchh------------
Confidence 11122234455566666 6778889999999999999999999999999999999999998743310
Q ss_pred ccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEE
Q 006375 536 AEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 606 (648)
Q Consensus 536 ~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 606 (648)
...+++. +.| +.+.|+.+|.++|.+.++-.+++|+..+.+.+..-+.
T Consensus 308 ------------------~lv~~lk-----~~p-iWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 308 ------------------YLVRTLK-----KAP-IWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred ------------------hhhhhhc-----cCc-eEEEEecCCCccccCcceeehHHHHhhccccchhhhh
Confidence 0112222 345 9999999999999999999999999988765544443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-12 Score=134.96 Aligned_cols=207 Identities=13% Similarity=0.091 Sum_probs=147.9
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
..+-.+.|||||+.++|..-..+. ..+++++++++|+... ....+....++||||| +|+|+...+ ...+||.+++
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd--g~~~iy~~dl 269 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD--GSPDIYLMDL 269 (425)
T ss_pred cceeccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC--CCccEEEEcC
Confidence 445578999999999999765542 3789999999987543 3456666679999999 999988754 5678999999
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEEe
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITR 237 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~ 237 (648)
.+.+. .. .+.. ......+.|||||++|+|.+++.+..+||+++++++. .++++....+. ...|||||++|+|.+
T Consensus 270 ~~~~~--~~-Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-~~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 270 DGKNL--PR-LTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-VTRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred CCCcc--ee-cccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-eeEeeccCCCCcCccCCCCCCEEEEEe
Confidence 98742 22 2222 3344478999999999999999999999999999998 77787655443 456999999999998
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
.. .....++..++......+ +...........+...+..+++.....+.+.+.....+
T Consensus 345 ~~--~g~~~i~~~~~~~~~~~~-~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~ 402 (425)
T COG0823 345 SS--GGQWDIDKNDLASGGKIR-ILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLD 402 (425)
T ss_pred cc--CCceeeEEeccCCCCcEE-EccccccCCCCCcCCCCceEEEeccCCCCceEEEeecc
Confidence 43 223778888886533322 44444333344455555566655555555666655555
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-11 Score=131.12 Aligned_cols=235 Identities=12% Similarity=0.104 Sum_probs=148.8
Q ss_pred CCEEEEEEeCCC-CeEEEEEEEECCCCCeeeccc-cCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEE
Q 006375 92 NKLVAYAEDTKG-DEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICL 168 (648)
Q Consensus 92 G~~la~~~~~~G-~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~ 168 (648)
+++|||.....+ ....+|+++|.++......+. ......+.||||| .|+|++.+. ...+||++++.++. ...+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~--~~~l 243 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGA--RKVV 243 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCc--eEEE
Confidence 688999976543 446899999998876544322 3334569999999 999988642 34679999998763 2233
Q ss_pred EeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCEEEEEeccCCCCCcEE
Q 006375 169 YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSEL 247 (648)
Q Consensus 169 ~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~l 247 (648)
... ......+.|||||++|++.+...+..+||++|++++. .+.++.... .....|+|||++|+|.+++++ ..+|
T Consensus 244 ~~~--~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g--~~~I 318 (429)
T PRK01742 244 ASF--RGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSG--SPQV 318 (429)
T ss_pred ecC--CCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCC--CceE
Confidence 221 1223357899999999997766666789999998887 677765432 234679999999999988643 4689
Q ss_pred EEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCC
Q 006375 248 LACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSES 327 (648)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~ 327 (648)
+.++..+ +..+ ++.... ....++++++.+++... ..+.++++. ++....++.. +......+
T Consensus 319 ~~~~~~~-~~~~-~l~~~~--~~~~~SpDG~~ia~~~~----~~i~~~Dl~--~g~~~~lt~~---------~~~~~~~~ 379 (429)
T PRK01742 319 YRMSASG-GGAS-LVGGRG--YSAQISADGKTLVMING----DNVVKQDLT--SGSTEVLSST---------FLDESPSI 379 (429)
T ss_pred EEEECCC-CCeE-EecCCC--CCccCCCCCCEEEEEcC----CCEEEEECC--CCCeEEecCC---------CCCCCceE
Confidence 9998865 2233 333222 22346667777766543 346667776 3322222111 11223456
Q ss_pred cccccEEEEEEeeCCCCCEEEEEECCCC
Q 006375 328 VFSSRILRFHYSSLRTPPSVYDYDMDMG 355 (648)
Q Consensus 328 ~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 355 (648)
++++..+.+... ...-..++..+...+
T Consensus 380 sPdG~~i~~~s~-~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 380 SPNGIMIIYSST-QGLGKVLQLVSADGR 406 (429)
T ss_pred CCCCCEEEEEEc-CCCceEEEEEECCCC
Confidence 778886665543 333334555555433
|
|
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=137.35 Aligned_cols=241 Identities=13% Similarity=0.086 Sum_probs=132.3
Q ss_pred EeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC--------------------CC----chhHHHHHHCCC
Q 006375 381 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP--------------------AF----NSSRLSLLDRGF 436 (648)
Q Consensus 381 ~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~--------------------~~----~~~~~~l~~~G~ 436 (648)
+.+.||.+|......|+ .+..+|+++||-.+..... .| ...+..|.++||
T Consensus 2 ~~~~~g~~l~~~~~~~~------~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~ 75 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVK------NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGY 75 (332)
T ss_pred ccCCCCCeEEEeeeecc------CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCC
Confidence 45678988887754443 2346999999954433211 11 234678889999
Q ss_pred EEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc------------------CCCCCCeEEEEeeChhHHH
Q 006375 437 IFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN------------------CYCTKEKLCIEGRSAGGLL 498 (648)
Q Consensus 437 ~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~------------------~~~d~~~i~i~G~S~GG~l 498 (648)
.|+++|.||+|.....-...+.-..-..-++|+...++.+.+. .+-....+.++||||||.+
T Consensus 76 ~V~~~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i 155 (332)
T TIGR01607 76 SVYGLDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNI 155 (332)
T ss_pred cEEEecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHH
Confidence 9999999999864321000000001112235555555555431 1111357999999999999
Q ss_pred HHHHHhhCCC--------ceeEEEecCCcccccccc--------------------cCCCCCCCc-c--cc-----ccc-
Q 006375 499 IGAVLNMRPD--------LFKAAVAAVPFVDVLTTM--------------------LDPTIPLTT-A--EW-----EEW- 541 (648)
Q Consensus 499 ~~~~~~~~p~--------~~~a~v~~~~~~d~~~~~--------------------~~~~~~~~~-~--~~-----~~~- 541 (648)
+..++.+.++ .++++|+.+|.+.+.... ..+.+.... . .+ ..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 235 (332)
T TIGR01607 156 ALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVNDIIK 235 (332)
T ss_pred HHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhhHHh
Confidence 9988765432 588899888875432100 011111000 0 00 000
Q ss_pred CCCC--C----HHHHHHHHcCC--ccccCCCC--CCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCC
Q 006375 542 GDPW--K----EEFYFYMKSYS--PVDNVKAQ--NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 611 (648)
Q Consensus 542 g~~~--~----~~~~~~~~~~s--p~~~~~~~--~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 611 (648)
-+|. + ...+..+.... ....+.++ ++| +|++||++|..|++..+.++++++... ..++++++ ++
T Consensus 236 ~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P-~Lii~G~~D~vv~~~~~~~~~~~~~~~--~~~l~~~~---g~ 309 (332)
T TIGR01607 236 FDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIP-ILFIHSKGDCVCSYEGTVSFYNKLSIS--NKELHTLE---DM 309 (332)
T ss_pred cCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCC-EEEEEeCCCCccCHHHHHHHHHhccCC--CcEEEEEC---CC
Confidence 1110 0 00111111110 01133334 577 999999999999999988888776532 34455665 88
Q ss_pred CccCCCchHHHHHHHHHHHHHHH
Q 006375 612 GHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 612 gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
+|....... .-+...++.+||.
T Consensus 310 ~H~i~~E~~-~~~v~~~i~~wL~ 331 (332)
T TIGR01607 310 DHVITIEPG-NEEVLKKIIEWIS 331 (332)
T ss_pred CCCCccCCC-HHHHHHHHHHHhh
Confidence 997654321 1222335678874
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=133.16 Aligned_cols=190 Identities=17% Similarity=0.189 Sum_probs=105.1
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHH-HHHHCCCEEEEEccCC---CCCCCh---hhhhcccccCCC-CcHhHHHH----
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRL-SLLDRGFIFAIAQIRG---GGELGR---QWYENGKFLKKK-NTFTDFIA---- 471 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~-~l~~~G~~v~~~~~rG---~g~~g~---~~~~~~~~~~~~-~~~~D~~~---- 471 (648)
.+.|+||++||- |... ..+..... ........++.++-+- ....|. .|.......... ...+++..
T Consensus 12 ~~~~lvi~LHG~-G~~~-~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~ 89 (216)
T PF02230_consen 12 KAKPLVILLHGY-GDSE-DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAER 89 (216)
T ss_dssp T-SEEEEEE--T-TS-H-HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHH
T ss_pred CCceEEEEECCC-CCCc-chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHH
Confidence 467999999994 4332 11111111 1122367777775431 111233 776533222211 12333333
Q ss_pred ---HHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHH
Q 006375 472 ---CAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEE 548 (648)
Q Consensus 472 ---~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~ 548 (648)
.++.+.+.+ ++++||++.|+|+||.+++.++.++|+.++++|+.+|.+-..... ..
T Consensus 90 l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~--------------------~~ 148 (216)
T PF02230_consen 90 LDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESEL--------------------ED 148 (216)
T ss_dssp HHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCC--------------------HC
T ss_pred HHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccccc--------------------cc
Confidence 333333334 899999999999999999999999999999999999865321100 00
Q ss_pred HHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHH
Q 006375 549 FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAF 628 (648)
Q Consensus 549 ~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~ 628 (648)
.+ .... +.| ++++||..|++||...+++.++.|++.+.+.+...| ++.||... . +++.+
T Consensus 149 --------~~-~~~~--~~p-i~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~---~g~gH~i~---~---~~~~~ 207 (216)
T PF02230_consen 149 --------RP-EALA--KTP-ILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEY---PGGGHEIS---P---EELRD 207 (216)
T ss_dssp --------CH-CCCC--TS--EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEE---TT-SSS-----H---HHHHH
T ss_pred --------cc-cccC--CCc-EEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEc---CCCCCCCC---H---HHHHH
Confidence 00 0011 455 999999999999999999999999999876555555 37899653 2 23445
Q ss_pred HHHHHHHhc
Q 006375 629 TYTFLMRAL 637 (648)
Q Consensus 629 ~~~fl~~~l 637 (648)
..+||.+++
T Consensus 208 ~~~~l~~~~ 216 (216)
T PF02230_consen 208 LREFLEKHI 216 (216)
T ss_dssp HHHHHHHH-
T ss_pred HHHHHhhhC
Confidence 678998764
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-11 Score=131.08 Aligned_cols=245 Identities=14% Similarity=0.097 Sum_probs=157.5
Q ss_pred CCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc-cCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcE
Q 006375 89 SPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDI 166 (648)
Q Consensus 89 SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~ 166 (648)
.+.+.+++|.....+....+|+++|.+++....... ......+.||||| .|+|+.... ...+|+++++.++. ..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~--~~ 227 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQ--RE 227 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCC--EE
Confidence 456788999977644457899999998766554332 2234568999999 999987643 34679999998762 22
Q ss_pred EEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCEEEEEeccCCCCCc
Q 006375 167 CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNS 245 (648)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~ 245 (648)
.+... ......+.|+|||+.|++.....+..+||++++.++. .+.++.... .....|+|||++|+|.+++.+ ..
T Consensus 228 ~~~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g--~~ 302 (417)
T TIGR02800 228 KVASF--PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG--SP 302 (417)
T ss_pred EeecC--CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC-EEECCCCCCCCCCEEECCCCCEEEEEECCCC--Cc
Confidence 23221 1223357899999999988766667899999999886 666654322 224569999999999988643 35
Q ss_pred EEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCC
Q 006375 246 ELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPS 325 (648)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~ 325 (648)
+|+.+++++. ..+.+...........++++++.+++.....+..++++++++. +....++. .. .....
T Consensus 303 ~iy~~d~~~~-~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~--~~~~~l~~--------~~-~~~~p 370 (417)
T TIGR02800 303 QIYMMDADGG-EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG--GGERVLTD--------TG-LDESP 370 (417)
T ss_pred eEEEEECCCC-CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC--CCeEEccC--------CC-CCCCc
Confidence 8999998763 3332443332222334455566777776666667888888873 32222221 11 11223
Q ss_pred CCcccccEEEEEEeeCCCCCEEEEEECCCC
Q 006375 326 ESVFSSRILRFHYSSLRTPPSVYDYDMDMG 355 (648)
Q Consensus 326 ~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 355 (648)
.+++++..+++....... ..++.++...+
T Consensus 371 ~~spdg~~l~~~~~~~~~-~~l~~~~~~g~ 399 (417)
T TIGR02800 371 SFAPNGRMILYATTRGGR-GVLGLVSTDGR 399 (417)
T ss_pred eECCCCCEEEEEEeCCCc-EEEEEEECCCc
Confidence 456778877776654433 56777665443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=125.28 Aligned_cols=240 Identities=20% Similarity=0.199 Sum_probs=140.8
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 459 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 459 (648)
.+...||..+-.....++. +.+.|+||.+||--|+..++.-......+.++||.|+++|.||+++.-..- ..
T Consensus 53 ~v~~pdg~~~~ldw~~~p~----~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~----p~ 124 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPR----AAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTS----PR 124 (345)
T ss_pred EEEcCCCCEEEEeeccCcc----ccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccC----cc
Confidence 3444566544444444332 245699999999777776663333445777889999999999988642210 01
Q ss_pred cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC---ceeEEEecCCcccccccc--cC------
Q 006375 460 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAVPFVDVLTTM--LD------ 528 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~~~a~v~~~~~~d~~~~~--~~------ 528 (648)
.......+|+..+++++.+... +.++.++|.|+||.+.+..+.+..+ +-+|++..+| .|+.... ++
T Consensus 125 ~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P-~Dl~~~~~~l~~~~s~~ 201 (345)
T COG0429 125 LYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAP-FDLEACAYRLDSGFSLR 201 (345)
T ss_pred eecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCH-HHHHHHHHHhcCchhhh
Confidence 1111234899999999998765 5899999999999665555554332 3344444444 3432110 00
Q ss_pred ----------------------CCCCCCcc-------cccccC----CC--CCHHHHHHHHcCCccccCCCCCCCeEEEe
Q 006375 529 ----------------------PTIPLTTA-------EWEEWG----DP--WKEEFYFYMKSYSPVDNVKAQNYPHILVT 573 (648)
Q Consensus 529 ----------------------~~~~~~~~-------~~~~~g----~~--~~~~~~~~~~~~sp~~~~~~~~~P~~li~ 573 (648)
...|.... ...||- .| .-++..+|+++-|++..+.+|..| +||+
T Consensus 202 ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~Ir~P-tLii 280 (345)
T COG0429 202 LYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPLLPKIRKP-TLII 280 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhccccccccccccc-eEEE
Confidence 11221100 001111 11 123455677889999999999999 9999
Q ss_pred ecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCC-C--c-hHHHHHHHHHHHHHHHHhcC
Q 006375 574 AGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK-S--G-RFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 574 ~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~-~--~-~~~~~~~~~~~~~fl~~~l~ 638 (648)
|+.+|+.+++..--+.-.. .+.. +.+..-..+||.+- . . +...|.+ ..+.+||...+.
T Consensus 281 ~A~DDP~~~~~~iP~~~~~---~np~---v~l~~t~~GGHvGfl~~~~~~~~~W~~-~ri~~~l~~~~~ 342 (345)
T COG0429 281 NAKDDPFMPPEVIPKLQEM---LNPN---VLLQLTEHGGHVGFLGGKLLHPQMWLE-QRILDWLDPFLE 342 (345)
T ss_pred ecCCCCCCChhhCCcchhc---CCCc---eEEEeecCCceEEeccCccccchhhHH-HHHHHHHHHHHh
Confidence 9999999986322222111 2222 33433448899432 1 1 2222332 356788877654
|
|
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=142.16 Aligned_cols=146 Identities=21% Similarity=0.249 Sum_probs=97.3
Q ss_pred CCCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCc----hhHHHHHHCCCEEEEEccCCC
Q 006375 371 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN----SSRLSLLDRGFIFAIAQIRGG 446 (648)
Q Consensus 371 ~~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~----~~~~~l~~~G~~v~~~~~rG~ 446 (648)
...|.+|+..+++.||..+.+.-+.+........+.|.||++||....+..+... ..+..|+++||.|.++|.||.
T Consensus 39 ~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~ 118 (395)
T PLN02872 39 PAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGT 118 (395)
T ss_pred HcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCccccccccc
Confidence 3478899999999999988877554322101123458899999976555443221 233467889999999999997
Q ss_pred CC-CChhhhhc-ccc----cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC---ceeEEEecC
Q 006375 447 GE-LGRQWYEN-GKF----LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAV 517 (648)
Q Consensus 447 g~-~g~~~~~~-~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~~~a~v~~~ 517 (648)
+. +|...... ... .+.+....|+.++++++.+.. .+++.++|+|+||.++.+++ .+|+ +++++++.+
T Consensus 119 ~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~ 194 (395)
T PLN02872 119 RWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLC 194 (395)
T ss_pred ccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhc
Confidence 63 33222111 111 111233579999999998642 36899999999999988666 4676 566767666
Q ss_pred Ccc
Q 006375 518 PFV 520 (648)
Q Consensus 518 ~~~ 520 (648)
|+.
T Consensus 195 P~~ 197 (395)
T PLN02872 195 PIS 197 (395)
T ss_pred chh
Confidence 653
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-12 Score=128.72 Aligned_cols=207 Identities=19% Similarity=0.203 Sum_probs=132.2
Q ss_pred eEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcH
Q 006375 387 TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF 466 (648)
Q Consensus 387 ~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~ 466 (648)
..+|+.++.|... ++.|+||++||+.+.. ..|......|+++||+|+++|++|.+.. .....+
T Consensus 37 ~~~p~~v~~P~~~----g~~PvVv~lHG~~~~~--~~y~~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~i 99 (313)
T PLN00021 37 PPKPLLVATPSEA----GTYPVLLFLHGYLLYN--SFYSQLLQHIASHGFIVVAPQLYTLAGP-----------DGTDEI 99 (313)
T ss_pred CCceEEEEeCCCC----CCCCEEEEECCCCCCc--ccHHHHHHHHHhCCCEEEEecCCCcCCC-----------CchhhH
Confidence 4688998888653 6789999999975432 2355666788999999999998874321 112345
Q ss_pred hHHHHHHHHHHHc--------CCCCCCeEEEEeeChhHHHHHHHHhhCCC-----ceeEEEecCCcccccccccCCCCCC
Q 006375 467 TDFIACAEYLIKN--------CYCTKEKLCIEGRSAGGLLIGAVLNMRPD-----LFKAAVAAVPFVDVLTTMLDPTIPL 533 (648)
Q Consensus 467 ~D~~~~~~~l~~~--------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----~~~a~v~~~~~~d~~~~~~~~~~~~ 533 (648)
+|..++++|+.+. ...|+++++++|||+||.++..++.++++ .|+++|+..|+..+.... .+
T Consensus 100 ~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~--~~--- 174 (313)
T PLN00021 100 KDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK--QT--- 174 (313)
T ss_pred HHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc--CC---
Confidence 6777788888752 23677999999999999999999988774 578888888875432110 01
Q ss_pred CcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCC-----c----cCC-chHHHHHHHHHhcCCCCCeE
Q 006375 534 TTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDP-----R----VMY-SEPAKFVAKLREMKTDDNIL 603 (648)
Q Consensus 534 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~-----~----v~~-~~~~~~~~~l~~~~~~~~~~ 603 (648)
.| .. ..+.| +..++..| +||+++..|. . .|. .+.++|+++++. ++..+
T Consensus 175 ---------~p---~i----l~~~~--~s~~~~~P-~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~---~~~~~ 232 (313)
T PLN00021 175 ---------PP---PV----LTYAP--HSFNLDIP-VLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKA---PAVHF 232 (313)
T ss_pred ---------CC---cc----cccCc--ccccCCCC-eEEEecCCCcccccccccccCCCCCCHHHHHHhcCC---Ceeee
Confidence 11 00 11111 11224677 9999888763 2 223 344788877654 33334
Q ss_pred EEEecCCCCccCCCch-------------------HHHHHH--HHHHHHHHHHhcCCC
Q 006375 604 LFKCELGAGHFSKSGR-------------------FERLRE--AAFTYTFLMRALSML 640 (648)
Q Consensus 604 ~~~~~~~~gH~~~~~~-------------------~~~~~~--~~~~~~fl~~~l~~~ 640 (648)
+.+ ++||+...+. .+..++ ...+.+||..+|...
T Consensus 233 ~~~---~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~ 287 (313)
T PLN00021 233 VAK---DYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGD 287 (313)
T ss_pred eec---CCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCc
Confidence 444 7888543111 111222 234689999998654
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=124.18 Aligned_cols=129 Identities=20% Similarity=0.251 Sum_probs=101.3
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHC-CCEEEEEccCCCCCCChhhhhcccccC-
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLK- 461 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~- 461 (648)
.+|.+-+.+|+.|+.. +.+.|+||++||+.++.........+..++++ ||.|++|| ++.+.|...+...+
T Consensus 42 ~~g~~r~y~l~vP~g~---~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPd-----g~~~~wn~~~~~~~~ 113 (312)
T COG3509 42 VNGLKRSYRLYVPPGL---PSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPD-----GYDRAWNANGCGNWF 113 (312)
T ss_pred cCCCccceEEEcCCCC---CCCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcC-----ccccccCCCcccccC
Confidence 3566788898888875 33459999999987765443333345667775 99999994 66677755544444
Q ss_pred -------CCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 462 -------KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 462 -------~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
...++..+.+.++.|+.+..+||.||+|.|.|+||.|+.+++..+|++|+|+...++..
T Consensus 114 ~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 114 GPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred CcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 23467788889999999999999999999999999999999999999999998888765
|
|
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=132.93 Aligned_cols=214 Identities=16% Similarity=0.151 Sum_probs=127.1
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||..++.. .|...+..|.++ |.|+++|.||.|.....-.. .........++|+...+..+++.-. .+
T Consensus 29 ~~~vlllHG~~~~~~--~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~-~~~~~~~~~~~~~a~~l~~~l~~l~--~~ 102 (294)
T PLN02824 29 GPALVLVHGFGGNAD--HWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPR-SAPPNSFYTFETWGEQLNDFCSDVV--GD 102 (294)
T ss_pred CCeEEEECCCCCChh--HHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccc-cccccccCCHHHHHHHHHHHHHHhc--CC
Confidence 478999999655443 466666777765 69999999999865431000 0000123456777766666554422 27
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc----------------cCCCCC--------CCc---ccc
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM----------------LDPTIP--------LTT---AEW 538 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~----------------~~~~~~--------~~~---~~~ 538 (648)
++.++|+||||.+++.++.++|++++++|+.+|........ +..... ... ...
T Consensus 103 ~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (294)
T PLN02824 103 PAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKNI 182 (294)
T ss_pred CeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHHH
Confidence 89999999999999999999999999999987643211000 000000 000 000
Q ss_pred --cccCCC--CCHHHHH----------------HHHcCC----ccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHH
Q 006375 539 --EEWGDP--WKEEFYF----------------YMKSYS----PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLR 594 (648)
Q Consensus 539 --~~~g~~--~~~~~~~----------------~~~~~s----p~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~ 594 (648)
..|+++ ..++..+ .+..+. ....+.++++| +|+++|++|..+|...++++.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lvi~G~~D~~~~~~~~~~~~~~~- 260 (294)
T PLN02824 183 LCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCP-VLIAWGEKDPWEPVELGRAYANFD- 260 (294)
T ss_pred HHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCC-eEEEEecCCCCCChHHHHHHHhcC-
Confidence 012211 0111111 111111 12335667898 999999999999987776643322
Q ss_pred hcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 595 EMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 595 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
...++++++ ++||....++.+.+.. .+.+||.+
T Consensus 261 ---~~~~~~~i~---~~gH~~~~e~p~~~~~--~i~~fl~~ 293 (294)
T PLN02824 261 ---AVEDFIVLP---GVGHCPQDEAPELVNP--LIESFVAR 293 (294)
T ss_pred ---CccceEEeC---CCCCChhhhCHHHHHH--HHHHHHhc
Confidence 224556665 8999877666654443 45777765
|
|
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.2e-13 Score=123.11 Aligned_cols=171 Identities=15% Similarity=0.076 Sum_probs=103.7
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHH--CCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLD--RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~--~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
|.||++||-.++...+........+.+ .+|.|+.+|.||.+ ++..+.++.++++.. .
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~~-------------------~~~~~~l~~l~~~~~--~ 60 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPYP-------------------ADAAELLESLVLEHG--G 60 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCCH-------------------HHHHHHHHHHHHHcC--C
Confidence 789999995444332211112233444 37999999999742 245556666665432 3
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCC
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKA 564 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~ 564 (648)
+++.++|+|+||++++.++.++|. + +|+.+|..+....... ........+..-.-+...+..+.++++.+.. +.
T Consensus 61 ~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-i~- 134 (190)
T PRK11071 61 DPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTD-YLGENENPYTGQQYVLESRHIYDLKVMQIDP-LE- 134 (190)
T ss_pred CCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHH-hcCCcccccCCCcEEEcHHHHHHHHhcCCcc-CC-
Confidence 689999999999999999999883 3 4667776664322210 0000000000000112334444445554433 33
Q ss_pred CCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccC
Q 006375 565 QNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 615 (648)
Q Consensus 565 ~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~ 615 (648)
...| ++|+||++|..||+.++.+++++. +.++++ +++|..
T Consensus 135 ~~~~-v~iihg~~De~V~~~~a~~~~~~~-------~~~~~~---ggdH~f 174 (190)
T PRK11071 135 SPDL-IWLLQQTGDEVLDYRQAVAYYAAC-------RQTVEE---GGNHAF 174 (190)
T ss_pred Chhh-EEEEEeCCCCcCCHHHHHHHHHhc-------ceEEEC---CCCcch
Confidence 3455 899999999999999999999853 234443 899976
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=130.50 Aligned_cols=206 Identities=17% Similarity=0.206 Sum_probs=122.9
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCe
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 486 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 486 (648)
|.||++||..+... .|...+..| .++|.|+++|+||.|..... .....++++.+.++.+++. .+.++
T Consensus 26 ~plvllHG~~~~~~--~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~--------~~~~~~~~~~~~~~~~i~~--l~~~~ 92 (276)
T TIGR02240 26 TPLLIFNGIGANLE--LVFPFIEAL-DPDLEVIAFDVPGVGGSSTP--------RHPYRFPGLAKLAARMLDY--LDYGQ 92 (276)
T ss_pred CcEEEEeCCCcchH--HHHHHHHHh-ccCceEEEECCCCCCCCCCC--------CCcCcHHHHHHHHHHHHHH--hCcCc
Confidence 67899999544433 345444454 45799999999998865321 1123455655555555544 23468
Q ss_pred EEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccc---------cccCCCC---CCCcccc--cccC-----CCCCH
Q 006375 487 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT---------TMLDPTI---PLTTAEW--EEWG-----DPWKE 547 (648)
Q Consensus 487 i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~---------~~~~~~~---~~~~~~~--~~~g-----~~~~~ 547 (648)
+.++|+||||.+++.++.++|++++++|+.++...... ....... +...... ..++ ++...
T Consensus 93 ~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (276)
T TIGR02240 93 VNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQPSHGIHIAPDIYGGAFRRDPELA 172 (276)
T ss_pred eEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhccccccchhhhhccceeeccchhh
Confidence 99999999999999999999999999999887643110 0000000 0000000 0000 01000
Q ss_pred --------------HHHHHHH--cCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCC
Q 006375 548 --------------EFYFYMK--SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 611 (648)
Q Consensus 548 --------------~~~~~~~--~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 611 (648)
.....+. .......++++++| +|+++|++|+.+|+.++.++.+.+.. .+++++. +
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~v~~~~~~~l~~~~~~----~~~~~i~---~- 243 (276)
T TIGR02240 173 MAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQP-TLVLAGDDDPIIPLINMRLLAWRIPN----AELHIID---D- 243 (276)
T ss_pred hhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCC-EEEEEeCCCCcCCHHHHHHHHHhCCC----CEEEEEc---C-
Confidence 0001011 11122345677898 99999999999999888888776642 3445552 3
Q ss_pred CccCCCchHHHHHHHHHHHHHHHHh
Q 006375 612 GHFSKSGRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 612 gH~~~~~~~~~~~~~~~~~~fl~~~ 636 (648)
||+...+..+.+.+ .+.+|+.+.
T Consensus 244 gH~~~~e~p~~~~~--~i~~fl~~~ 266 (276)
T TIGR02240 244 GHLFLITRAEAVAP--IIMKFLAEE 266 (276)
T ss_pred CCchhhccHHHHHH--HHHHHHHHh
Confidence 99876665554444 456777764
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-12 Score=132.93 Aligned_cols=161 Identities=19% Similarity=0.228 Sum_probs=118.2
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 161 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~ 161 (648)
..|+|||||++|||...++| ..+||++|+.++..... ...++...+.|+||| +|+|++.. .+++ +||++++++.
T Consensus 241 ~~P~fspDG~~l~f~~~rdg--~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr-~G~p-~I~~~~~~g~ 316 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDG--SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDR-GGRP-QIYLYDLEGS 316 (425)
T ss_pred CCccCCCCCCEEEEEECCCC--CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCC-CCCc-ceEEECCCCC
Confidence 36899999999999999887 69999999999885442 345556689999999 99999653 3444 7999999987
Q ss_pred CCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCC
Q 006375 162 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDE 241 (648)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~ 241 (648)
+. ..+.+ ...... .+.|||||++|++.+...+..++...|+.++..++.++.........|+++|+.+.|.++..
T Consensus 317 ~~-~riT~--~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~- 391 (425)
T COG0823 317 QV-TRLTF--SGGGNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG- 391 (425)
T ss_pred ce-eEeec--cCCCCc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC-
Confidence 44 22222 222222 67899999999998754444778888887664356666555555567999999999998863
Q ss_pred CCCcEEEEEeCCC
Q 006375 242 LFNSELLACPVDN 254 (648)
Q Consensus 242 ~~~~~l~~~~~~~ 254 (648)
....|..++..+
T Consensus 392 -~~~~l~~~s~~g 403 (425)
T COG0823 392 -GGSVLSLVSLDG 403 (425)
T ss_pred -CCceEEEeeccc
Confidence 345666666544
|
|
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-12 Score=129.65 Aligned_cols=108 Identities=17% Similarity=0.089 Sum_probs=74.8
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
+.|.||++||+++.... .+......+.+.||.|+.+|.||.|...... ......+++++.+.+..+++.- +.
T Consensus 24 ~~~~vl~~hG~~g~~~~-~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~ 95 (288)
T TIGR01250 24 EKIKLLLLHGGPGMSHE-YLENLRELLKEEGREVIMYDQLGCGYSDQPD-----DSDELWTIDYFVDELEEVREKL--GL 95 (288)
T ss_pred CCCeEEEEcCCCCccHH-HHHHHHHHHHhcCCEEEEEcCCCCCCCCCCC-----cccccccHHHHHHHHHHHHHHc--CC
Confidence 35789999998776532 1232223334449999999999987642110 0011245677777666666543 34
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
.++.++|+|+||.++..++.++|+.++++|+..++.
T Consensus 96 ~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (288)
T TIGR01250 96 DKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLD 131 (288)
T ss_pred CcEEEEEeehHHHHHHHHHHhCccccceeeEecccc
Confidence 679999999999999999999999999999877643
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.1e-12 Score=125.05 Aligned_cols=198 Identities=15% Similarity=0.140 Sum_probs=119.4
Q ss_pred EEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC-Ce
Q 006375 408 LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK-EK 486 (648)
Q Consensus 408 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~-~~ 486 (648)
+||++||..... ..|...+..|.++||.|+++|+||.|..... .....+++++.+.+..+++. .+. ++
T Consensus 5 ~vvllHG~~~~~--~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHGA--WCWYKLATLLDAAGFKSTCVDLTGAGISLTD-------SNTVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCCc--CcHHHHHHHHhhCCceEEEecCCcCCCCCCC-------ccccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 599999966443 3466666777788999999999999865321 11124456666655555544 222 58
Q ss_pred EEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc---ccc--ccc---cC-----------C--CCCCC----cccc-cc
Q 006375 487 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV---DVL--TTM---LD-----------P--TIPLT----TAEW-EE 540 (648)
Q Consensus 487 i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~---d~~--~~~---~~-----------~--~~~~~----~~~~-~~ 540 (648)
+.++|+||||.++..++.++|++++++|+.++.. +.. ... .. . ..+.. ..++ ..
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRH 153 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHH
Confidence 9999999999999999999999999988876541 100 000 00 0 00000 0000 00
Q ss_pred --cCCCCCHHHHHHH-HcCCc--c----------ccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEE
Q 006375 541 --WGDPWKEEFYFYM-KSYSP--V----------DNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 605 (648)
Q Consensus 541 --~g~~~~~~~~~~~-~~~sp--~----------~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 605 (648)
+... ..+..... ....+ . ..+.++++| +|+++|++|..+|+..++.+.+.+... +++++
T Consensus 154 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP-~lvi~g~~D~~~~~~~~~~~~~~~~~a----~~~~i 227 (255)
T PLN02965 154 YYYNQS-PLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVP-RVYIKTAKDNLFDPVRQDVMVENWPPA----QTYVL 227 (255)
T ss_pred HHhcCC-CHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCC-EEEEEcCCCCCCCHHHHHHHHHhCCcc----eEEEe
Confidence 0110 11100000 00000 0 123357888 999999999999998887777666532 34555
Q ss_pred EecCCCCccCCCchHHHHHH
Q 006375 606 KCELGAGHFSKSGRFERLRE 625 (648)
Q Consensus 606 ~~~~~~gH~~~~~~~~~~~~ 625 (648)
. ++||....++++.+..
T Consensus 228 ~---~~GH~~~~e~p~~v~~ 244 (255)
T PLN02965 228 E---DSDHSAFFSVPTTLFQ 244 (255)
T ss_pred c---CCCCchhhcCHHHHHH
Confidence 4 8999887776665554
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.8e-12 Score=127.64 Aligned_cols=206 Identities=17% Similarity=0.183 Sum_probs=121.7
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|+||++||..+... .|......|. ++|.|+++|+||.|...... .....++++.+.+..+++.- +.+
T Consensus 28 ~~~vv~~hG~~~~~~--~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~l~~~i~~~--~~~ 95 (278)
T TIGR03056 28 GPLLLLLHGTGASTH--SWRDLMPPLA-RSFRVVAPDLPGHGFTRAPF-------RFRFTLPSMAEDLSALCAAE--GLS 95 (278)
T ss_pred CCeEEEEcCCCCCHH--HHHHHHHHHh-hCcEEEeecCCCCCCCCCcc-------ccCCCHHHHHHHHHHHHHHc--CCC
Confidence 589999999655432 3444444554 57999999999988643221 11245677777777666542 236
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCC----------CCCCc----------ccccc----c
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPT----------IPLTT----------AEWEE----W 541 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~----------~~~~~----------~~~~~----~ 541 (648)
++.++|+|+||.+++.++.++|++++++|+.++..+......... .+... ..+.. .
T Consensus 96 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (278)
T TIGR03056 96 PDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRDT 175 (278)
T ss_pred CceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhcc
Confidence 789999999999999999999998888888776543211100000 00000 00000 0
Q ss_pred CCCCCHH---HH--------------HHHHcCCc---cccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCC
Q 006375 542 GDPWKEE---FY--------------FYMKSYSP---VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN 601 (648)
Q Consensus 542 g~~~~~~---~~--------------~~~~~~sp---~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~ 601 (648)
+...++. .+ ..+..++. ...++++++| +|+++|++|..||...++++.+.+.. .+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~lii~g~~D~~vp~~~~~~~~~~~~~----~~ 250 (278)
T TIGR03056 176 GSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIP-LHLIAGEEDKAVPPDESKRAATRVPT----AT 250 (278)
T ss_pred ccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCC-EEEEEeCCCcccCHHHHHHHHHhccC----Ce
Confidence 0000000 00 11111111 1235567888 99999999999998887777665542 34
Q ss_pred eEEEEecCCCCccCCCchHHHHHHHHHHHHHH
Q 006375 602 ILLFKCELGAGHFSKSGRFERLREAAFTYTFL 633 (648)
Q Consensus 602 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 633 (648)
.+.++ ++||+......+.+.+ .+.+||
T Consensus 251 ~~~~~---~~gH~~~~e~p~~~~~--~i~~f~ 277 (278)
T TIGR03056 251 LHVVP---GGGHLVHEEQADGVVG--LILQAA 277 (278)
T ss_pred EEEEC---CCCCcccccCHHHHHH--HHHHHh
Confidence 45554 8899876555443333 345554
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.8e-13 Score=129.94 Aligned_cols=199 Identities=18% Similarity=0.209 Sum_probs=118.5
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
..|+||++||..... ..|......| .+||.|+++|+||.|..... .....++++.+.+..+++.- +.
T Consensus 12 ~~~~li~~hg~~~~~--~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~--------~~~~~~~~~~~~~~~~i~~~--~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTDL--RMWDPVLPAL-TPDFRVLRYDKRGHGLSDAP--------EGPYSIEDLADDVLALLDHL--GI 78 (251)
T ss_pred CCCeEEEEcCcccch--hhHHHHHHHh-hcccEEEEecCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHh--CC
Confidence 468999999953332 2344444444 57999999999998865321 12245677776666666542 34
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccc--c-------cCCCCC-CC---cccc--cccCCCCCH--
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT--M-------LDPTIP-LT---TAEW--EEWGDPWKE-- 547 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~--~-------~~~~~~-~~---~~~~--~~~g~~~~~-- 547 (648)
+++.++|+|+||.++..++.++|+.++++|+.++...+... . ...... .. ...+ ..+..+...
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 68999999999999999999999999988877654321110 0 000000 00 0000 011111000
Q ss_pred HHH----------------HHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCC
Q 006375 548 EFY----------------FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 611 (648)
Q Consensus 548 ~~~----------------~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 611 (648)
+.+ ..+...+....+.++++| +|+++|++|..+|.....++.+.+. ..+.++++ ++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-vlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~---~~ 230 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVP-TLCIAGDQDGSTPPELVREIADLVP----GARFAEIR---GA 230 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCC-eEEEEeccCCcCChHHHHHHHHhCC----CceEEEEC---CC
Confidence 000 011112223445667888 9999999999999987777766654 23445554 78
Q ss_pred CccCCCchHHHHH
Q 006375 612 GHFSKSGRFERLR 624 (648)
Q Consensus 612 gH~~~~~~~~~~~ 624 (648)
||.......+.+.
T Consensus 231 gH~~~~~~p~~~~ 243 (251)
T TIGR02427 231 GHIPCVEQPEAFN 243 (251)
T ss_pred CCcccccChHHHH
Confidence 9976655554443
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-12 Score=113.44 Aligned_cols=198 Identities=18% Similarity=0.165 Sum_probs=124.5
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC---CCchhHHHHHHCCCEEEEEccCCCCCCChhh
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP---AFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 453 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~---~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~ 453 (648)
.++.++..-|. +.+. +.|.+ ....|+.|.+|--+....+. --...+..|.++||+++.+|+||-|..+..|
T Consensus 5 ~~v~i~Gp~G~-le~~-~~~~~----~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~f 78 (210)
T COG2945 5 PTVIINGPAGR-LEGR-YEPAK----TPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEF 78 (210)
T ss_pred CcEEecCCccc-ceec-cCCCC----CCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcc
Confidence 44555555554 5554 22322 24467777777533222222 1223346788899999999999988765544
Q ss_pred hhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCC
Q 006375 454 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPL 533 (648)
Q Consensus 454 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~ 533 (648)
.++....+|..+|++|++++.. +..-..+.|.|.|+++++.++.+.|+ ....++..|..+...+
T Consensus 79 ------D~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~~df-------- 142 (210)
T COG2945 79 ------DNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINAYDF-------- 142 (210)
T ss_pred ------cCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCchhh--------
Confidence 4555677999999999998753 33345889999999999999999886 3445555554441110
Q ss_pred CcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCc
Q 006375 534 TTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGH 613 (648)
Q Consensus 534 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH 613 (648)
+- +..... |.|+++|+.|++|++....++.+. .+.+.+++. ++.|
T Consensus 143 -----------------------s~---l~P~P~-~~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~---~a~H 187 (210)
T COG2945 143 -----------------------SF---LAPCPS-PGLVIQGDADDVVDLVAVLKWQES-----IKITVITIP---GADH 187 (210)
T ss_pred -----------------------hh---ccCCCC-CceeEecChhhhhcHHHHHHhhcC-----CCCceEEec---CCCc
Confidence 00 111123 499999999999887766666544 334445554 8999
Q ss_pred cCCCchHHHHHHHHHHHHHHH
Q 006375 614 FSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~fl~ 634 (648)
++...... +.+ .+.+||.
T Consensus 188 FF~gKl~~-l~~--~i~~~l~ 205 (210)
T COG2945 188 FFHGKLIE-LRD--TIADFLE 205 (210)
T ss_pred eecccHHH-HHH--HHHHHhh
Confidence 87543222 222 3467773
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.5e-12 Score=129.14 Aligned_cols=243 Identities=20% Similarity=0.202 Sum_probs=149.7
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC-------------------ccceeEEecCC-eEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-------------------VTASVEWAGNE-ALVYI 142 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-------------------~~~~~~WspDg-~l~y~ 142 (648)
+..+.|||||++|||..+ .+||++++.+++.+..+..+ ....+.||||| +|+|.
T Consensus 45 ~~~~~~sP~g~~~~~v~~------~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 45 LQDAKWSPDGKYIAFVRD------NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp BSEEEE-SSSTEEEEEET------TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred cccceeecCCCeeEEEec------CceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 357899999999999985 38999999888766433222 23558899999 99999
Q ss_pred EeCCCC-------------------------------CCceEEEEECCCCCCCcEEEEe---ecCCCeEEEEEeCCCCcE
Q 006375 143 TMDEIL-------------------------------RPDKAWLHKLEADQSNDICLYH---EKDDIYSLGLQASESKKF 188 (648)
Q Consensus 143 ~~~~~~-------------------------------~~~~l~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~s~Dg~~ 188 (648)
+.|+.. ...+|+.+++.++... .+... .....+...+.|++|++.
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCcE
Confidence 987521 0124666677665322 21111 123456678899999996
Q ss_pred EEEEEccc--cccEEEEEECCCCCceeEeeecc--ccee----eeEe-ecCCEEEEEeccCCCCCcEEEEEeCCCCCcce
Q 006375 189 LFIASESK--ITRFVFYLDVSKPEELRVLTPRV--VGVD----TAAS-HRGNHFFITRRSDELFNSELLACPVDNTSETT 259 (648)
Q Consensus 189 l~~~~~~~--~~~~l~~~dl~~~~~~~~l~~~~--~~~~----~~~s-~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 259 (648)
|++...++ ....++++|..++. .+.+.... ..+. ..+. +++..+++.+.+++ ..+|+.++.++ +..+
T Consensus 198 l~~~~~nR~q~~~~l~~~d~~tg~-~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G--~~hly~~~~~~-~~~~ 273 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLVLCDASTGE-TRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG--YRHLYLYDLDG-GKPR 273 (353)
T ss_dssp EEEEEEETTSTEEEEEEEEECTTT-CEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS--SEEEEEEETTS-SEEE
T ss_pred EEEEEcccCCCEEEEEEEECCCCc-eeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC--CcEEEEEcccc-ccee
Confidence 66654433 34788899998876 44433221 1221 2243 78888888887643 57999999987 4444
Q ss_pred eEecCCCCc-ccceEEEeCCEEEEEEecCC--eeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEE
Q 006375 260 VLIPHRESV-KLQDIQLFIDHLAVYEREGG--LQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRF 336 (648)
Q Consensus 260 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~--~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~ 336 (648)
.++.....+ .+..++..++.+++....+. ..+|+.++++ .++.+++||...... ++ ...+++++.+..
T Consensus 274 ~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~-~~~~~~~LT~~~~~~-----~~---~~~Spdg~y~v~ 344 (353)
T PF00930_consen 274 QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD-SGGEPKCLTCEDGDH-----YS---ASFSPDGKYYVD 344 (353)
T ss_dssp ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT-ETTEEEESSTTSSTT-----EE---EEE-TTSSEEEE
T ss_pred ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC-CCCCeEeccCCCCCc-----eE---EEECCCCCEEEE
Confidence 455444333 34455555678888877644 4466666665 145555555332111 12 345678899999
Q ss_pred EEeeCCCCC
Q 006375 337 HYSSLRTPP 345 (648)
Q Consensus 337 ~~ss~~~P~ 345 (648)
.++++..|+
T Consensus 345 ~~s~~~~P~ 353 (353)
T PF00930_consen 345 TYSGPDTPP 353 (353)
T ss_dssp EEESSSSCE
T ss_pred EEcCCCCCC
Confidence 999999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.4e-12 Score=126.44 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=73.9
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||.+++.. .|...+..|++++ .|+++|.||.|.....- ....+++..+.+..+++.- ..+
T Consensus 27 g~~vvllHG~~~~~~--~w~~~~~~L~~~~-~via~D~~G~G~S~~~~--------~~~~~~~~a~dl~~ll~~l--~~~ 93 (295)
T PRK03592 27 GDPIVFLHGNPTSSY--LWRNIIPHLAGLG-RCLAPDLIGMGASDKPD--------IDYTFADHARYLDAWFDAL--GLD 93 (295)
T ss_pred CCEEEEECCCCCCHH--HHHHHHHHHhhCC-EEEEEcCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHHh--CCC
Confidence 478999999765543 3555667777765 99999999998764321 1134455554444444432 236
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
++.++|+|+||.+++.++.++|++++++|+.++.
T Consensus 94 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~ 127 (295)
T PRK03592 94 DVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAI 127 (295)
T ss_pred CeEEEEECHHHHHHHHHHHhChhheeEEEEECCC
Confidence 8999999999999999999999999999988863
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-12 Score=127.45 Aligned_cols=208 Identities=15% Similarity=0.146 Sum_probs=117.3
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
+..|.||++||.++... .|......|. .+|.|+.+|.||.|..... ...+++++.+-+..+++. ..
T Consensus 14 ~~~~~iv~lhG~~~~~~--~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~---------~~~~~~~~~~d~~~~l~~--l~ 79 (255)
T PRK10673 14 HNNSPIVLVHGLFGSLD--NLGVLARDLV-NDHDIIQVDMRNHGLSPRD---------PVMNYPAMAQDLLDTLDA--LQ 79 (255)
T ss_pred CCCCCEEEECCCCCchh--HHHHHHHHHh-hCCeEEEECCCCCCCCCCC---------CCCCHHHHHHHHHHHHHH--cC
Confidence 45689999999766543 3444444544 5799999999998865421 112344444333333332 23
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCC-cccccc-----------cccCCCCCCC------------cccc-
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP-FVDVLT-----------TMLDPTIPLT------------TAEW- 538 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~-~~d~~~-----------~~~~~~~~~~------------~~~~- 538 (648)
.+++.++|+|+||.++..++.++|++++++|+..+ ..+... .......... ...+
T Consensus 80 ~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (255)
T PRK10673 80 IEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEGVI 159 (255)
T ss_pred CCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHHHH
Confidence 46799999999999999999999999999887632 111100 0000000000 0000
Q ss_pred ----cccCCC----CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCC
Q 006375 539 ----EEWGDP----WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 610 (648)
Q Consensus 539 ----~~~g~~----~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 610 (648)
..+... ..+..+..+.....+..+.++++| +|+++|++|..|+...++.+.+.+. ..++++++ +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~---~ 231 (255)
T PRK10673 160 QFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHP-ALFIRGGNSPYVTEAYRDDLLAQFP----QARAHVIA---G 231 (255)
T ss_pred HHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCC-eEEEECCCCCCCCHHHHHHHHHhCC----CcEEEEeC---C
Confidence 000000 000011111112222334556788 9999999999998766666655443 33455565 8
Q ss_pred CCccCCCchHHHHHHHHHHHHHHHH
Q 006375 611 AGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 611 ~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
+||.......+.+.+ .+..||.+
T Consensus 232 ~gH~~~~~~p~~~~~--~l~~fl~~ 254 (255)
T PRK10673 232 AGHWVHAEKPDAVLR--AIRRYLND 254 (255)
T ss_pred CCCeeeccCHHHHHH--HHHHHHhc
Confidence 999776555543333 34567654
|
|
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-12 Score=125.09 Aligned_cols=131 Identities=14% Similarity=0.026 Sum_probs=91.2
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC--CCchhHHHHHHCCCEEEEEccCCCCCCChhhh
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP--AFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 454 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~--~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 454 (648)
+.+.+. .+|..+.+.+..|.+. +.|.||++|||....... .+...+..|+++||.|+++|+||.|......
T Consensus 3 ~~~~~~-~~~~~l~g~~~~p~~~-----~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~- 75 (274)
T TIGR03100 3 RALTFS-CEGETLVGVLHIPGAS-----HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGEN- 75 (274)
T ss_pred eeEEEE-cCCcEEEEEEEcCCCC-----CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC-
Confidence 345555 4567799988887542 235677778765433221 2334457888899999999999988653211
Q ss_pred hcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccc
Q 006375 455 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 521 (648)
Q Consensus 455 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d 521 (648)
.......+|+.++++++.++. ..-++|.++|+|+||++++.++.. +..++++|+.+|++.
T Consensus 76 -----~~~~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~ 135 (274)
T TIGR03100 76 -----LGFEGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVR 135 (274)
T ss_pred -----CCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccC
Confidence 111234589999999998652 122679999999999998888764 467999999998754
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-12 Score=132.46 Aligned_cols=212 Identities=16% Similarity=0.214 Sum_probs=122.2
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||..+... .|...+..|. .+|.|+.+|+||.|..... ......++++.+.+..+++. ...+
T Consensus 88 gp~lvllHG~~~~~~--~w~~~~~~L~-~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~~l~~~l~~--l~~~ 155 (360)
T PLN02679 88 GPPVLLVHGFGASIP--HWRRNIGVLA-KNYTVYAIDLLGFGASDKP-------PGFSYTMETWAELILDFLEE--VVQK 155 (360)
T ss_pred CCeEEEECCCCCCHH--HHHHHHHHHh-cCCEEEEECCCCCCCCCCC-------CCccccHHHHHHHHHHHHHH--hcCC
Confidence 378999999654432 3555555554 5899999999998865321 00123445555544444433 2236
Q ss_pred eEEEEeeChhHHHHHHHHh-hCCCceeEEEecCCccccccc------ccC---CC---------CCCCc---------cc
Q 006375 486 KLCIEGRSAGGLLIGAVLN-MRPDLFKAAVAAVPFVDVLTT------MLD---PT---------IPLTT---------AE 537 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~-~~p~~~~a~v~~~~~~d~~~~------~~~---~~---------~~~~~---------~~ 537 (648)
++.++|+|+||.++..++. .+|++++++|+..+....... ... +. .+... ..
T Consensus 156 ~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (360)
T PLN02679 156 PTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRD 235 (360)
T ss_pred CeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHH
Confidence 8999999999999888776 469999999988764311000 000 00 00000 00
Q ss_pred -c-----cccCCCC--CHHH----------------HHHHHc----CCccccCCCCCCCeEEEeecCCCCccCCchH-HH
Q 006375 538 -W-----EEWGDPW--KEEF----------------YFYMKS----YSPVDNVKAQNYPHILVTAGLNDPRVMYSEP-AK 588 (648)
Q Consensus 538 -~-----~~~g~~~--~~~~----------------~~~~~~----~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~-~~ 588 (648)
. ..++++. .++. +..+.. .+....+.++++| +||++|++|..+|+..+ .+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-tLii~G~~D~~~p~~~~~~~ 314 (360)
T PLN02679 236 NLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLP-ILVLWGDQDPFTPLDGPVGK 314 (360)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCC-EEEEEeCCCCCcCchhhHHH
Confidence 0 0011110 1111 111111 1112345667898 99999999999998743 34
Q ss_pred HHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 589 FVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 589 ~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
+++++.+.-...++++++ ++||+...++++.+.+ .+.+||.+
T Consensus 315 ~~~~l~~~ip~~~l~~i~---~aGH~~~~E~Pe~~~~--~I~~FL~~ 356 (360)
T PLN02679 315 YFSSLPSQLPNVTLYVLE---GVGHCPHDDRPDLVHE--KLLPWLAQ 356 (360)
T ss_pred HHHhhhccCCceEEEEcC---CCCCCccccCHHHHHH--HHHHHHHh
Confidence 555565433345556665 8999887776665554 56788864
|
|
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-11 Score=122.38 Aligned_cols=199 Identities=20% Similarity=0.192 Sum_probs=130.1
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccc--cCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVK--LDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~--~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 452 (648)
.-++..++.+||..+-.-++.+.+... ..+..|+||++||-.|.+.+..-........++||.+++.|.||.++.--.
T Consensus 92 ~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~Lt 171 (409)
T KOG1838|consen 92 EYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLT 171 (409)
T ss_pred cceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccC
Confidence 345566667788778877675554311 134679999999987777664333334455667999999999996653111
Q ss_pred hhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC---ceeEEEecCCccccc---ccc
Q 006375 453 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAVPFVDVL---TTM 526 (648)
Q Consensus 453 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~~~a~v~~~~~~d~~---~~~ 526 (648)
.. +.--...-+|+.++++++.++..- .++.++|.||||.+....+.+..+ +.+|+++.+|+ |.+ +.+
T Consensus 172 Tp----r~f~ag~t~Dl~~~v~~i~~~~P~--a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pw-d~~~~~~~~ 244 (409)
T KOG1838|consen 172 TP----RLFTAGWTEDLREVVNHIKKRYPQ--APLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPW-DLLAASRSI 244 (409)
T ss_pred CC----ceeecCCHHHHHHHHHHHHHhCCC--CceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccc-hhhhhhhHH
Confidence 10 011112348999999999987542 589999999999999998887533 66677777775 422 110
Q ss_pred cC------------CCCC-----------------------CCccccc------ccCCCCCHHHHHHHHcCCccccCCCC
Q 006375 527 LD------------PTIP-----------------------LTTAEWE------EWGDPWKEEFYFYMKSYSPVDNVKAQ 565 (648)
Q Consensus 527 ~~------------~~~~-----------------------~~~~~~~------~~g~~~~~~~~~~~~~~sp~~~~~~~ 565 (648)
.. ..+. .+..+++ .+|-+. ..+|+++.|+...++++
T Consensus 245 ~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~---~deYY~~aSs~~~v~~I 321 (409)
T KOG1838|consen 245 ETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKS---VDEYYKKASSSNYVDKI 321 (409)
T ss_pred hcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCc---HHHHHhhcchhhhcccc
Confidence 00 0000 0001111 123332 33566888999999999
Q ss_pred CCCeEEEeecCCCCccCCc
Q 006375 566 NYPHILVTAGLNDPRVMYS 584 (648)
Q Consensus 566 ~~P~~li~~g~~D~~v~~~ 584 (648)
+.| +|++++.+|++||..
T Consensus 322 ~VP-~L~ina~DDPv~p~~ 339 (409)
T KOG1838|consen 322 KVP-LLCINAADDPVVPEE 339 (409)
T ss_pred ccc-EEEEecCCCCCCCcc
Confidence 999 999999999999874
|
|
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.9e-12 Score=122.55 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=74.8
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHH-HHHHHHcCCCCCC
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC-AEYLIKNCYCTKE 485 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~ 485 (648)
|+||++||..+... .|......|+ +||.|+.+|.||.|..... .......++++... +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~~~~--~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGSGA--DWQALIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCchh--hHHHHHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 78999999655433 3555566766 7999999999998865321 01122344555544 4545443 2457
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccc
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 521 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d 521 (648)
++.++|+|+||.++..++.++|+.++++++..+...
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~ 106 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPG 106 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCC
Confidence 899999999999999999999999999998877543
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-12 Score=126.84 Aligned_cols=122 Identities=19% Similarity=0.148 Sum_probs=81.0
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 459 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 459 (648)
++...+|.+|.... .+ . .+.+.||++||+++.... ......+...+|.|+++|.||.|..... .
T Consensus 8 ~~~~~~~~~l~y~~---~g--~--~~~~~lvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~G~S~~~------~ 71 (306)
T TIGR01249 8 YLNVSDNHQLYYEQ---SG--N--PDGKPVVFLHGGPGSGTD---PGCRRFFDPETYRIVLFDQRGCGKSTPH------A 71 (306)
T ss_pred eEEcCCCcEEEEEE---Cc--C--CCCCEEEEECCCCCCCCC---HHHHhccCccCCEEEEECCCCCCCCCCC------C
Confidence 44455677665431 11 1 123568999998765432 1122334457999999999998754321 0
Q ss_pred cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 460 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
.......+|+.+.+..+.+.- +.+++.++|+||||.+++.++.++|++++++|+..++
T Consensus 72 ~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~ 129 (306)
T TIGR01249 72 CLEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIF 129 (306)
T ss_pred CcccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccc
Confidence 111234567777777776653 3368999999999999999999999999988887654
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.6e-12 Score=132.39 Aligned_cols=125 Identities=13% Similarity=0.110 Sum_probs=82.1
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchh-HHHHH---HCCCEEEEEccCCCCCCChhhhh
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSS-RLSLL---DRGFIFAIAQIRGGGELGRQWYE 455 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~-~~~l~---~~G~~v~~~~~rG~g~~g~~~~~ 455 (648)
.+.+..+.++....--|++. ...|.||++||..+... .|... +..|. .++|.|+++|+||.|.....
T Consensus 179 ~~~~~~~~~l~~~~~gp~~~----~~k~~VVLlHG~~~s~~--~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p--- 249 (481)
T PLN03087 179 SWLSSSNESLFVHVQQPKDN----KAKEDVLFIHGFISSSA--FWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKP--- 249 (481)
T ss_pred eeEeeCCeEEEEEEecCCCC----CCCCeEEEECCCCccHH--HHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCC---
Confidence 34444556666554444332 22478999999765432 23322 23333 47999999999998865321
Q ss_pred cccccCCCCcHhHHHHHHH-HHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 456 NGKFLKKKNTFTDFIACAE-YLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 456 ~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
......++++.+.+. .+.+.- +.+++.++|+||||+++..++.++|++++++|+.+|.
T Consensus 250 ----~~~~ytl~~~a~~l~~~ll~~l--g~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~ 308 (481)
T PLN03087 250 ----ADSLYTLREHLEMIERSVLERY--KVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPP 308 (481)
T ss_pred ----CCCcCCHHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCC
Confidence 111235666666663 444432 3368999999999999999999999999999988764
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.2e-12 Score=130.29 Aligned_cols=110 Identities=20% Similarity=0.176 Sum_probs=76.7
Q ss_pred CCcEEEEecCCCCCCC---CCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC
Q 006375 405 SDPLLLYGYGSYEICN---DPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 481 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~---~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 481 (648)
+.| ||++||-..... .......+..|+++||.|+++|+||.|.....+. ......+|+.++++++.++.
T Consensus 62 ~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~~~------~~d~~~~~~~~~v~~l~~~~- 133 (350)
T TIGR01836 62 KTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRYLT------LDDYINGYIDKCVDYICRTS- 133 (350)
T ss_pred CCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhcCC------HHHHHHHHHHHHHHHHHHHh-
Confidence 345 888887321111 1112445678899999999999998664211110 00011245778899998763
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccc
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVL 523 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~ 523 (648)
..+++.++|+|+||.+++.++..+|+.++++|+.++.+|..
T Consensus 134 -~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~ 174 (350)
T TIGR01836 134 -KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFE 174 (350)
T ss_pred -CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccC
Confidence 34789999999999999999999999999999999888753
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=127.94 Aligned_cols=106 Identities=18% Similarity=0.136 Sum_probs=69.2
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHH-HHHHHcCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACA-EYLIKNCYCT 483 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d 483 (648)
..|+||++||..+.. ..|...+..|. ++|.|+++|+||.|...+.-.. ........+.+.+.+ +|+... +
T Consensus 104 ~~p~vvllHG~~~~~--~~~~~~~~~L~-~~~~vi~~D~rG~G~S~~~~~~---~~~~~~~~~~~~~~i~~~~~~l---~ 174 (402)
T PLN02894 104 DAPTLVMVHGYGASQ--GFFFRNFDALA-SRFRVIAIDQLGWGGSSRPDFT---CKSTEETEAWFIDSFEEWRKAK---N 174 (402)
T ss_pred CCCEEEEECCCCcch--hHHHHHHHHHH-hCCEEEEECCCCCCCCCCCCcc---cccHHHHHHHHHHHHHHHHHHc---C
Confidence 468999999965432 22334445555 4699999999999876432110 000001112233333 344333 3
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
..++.++|+||||++++.++.++|+.++++|+..|.
T Consensus 175 ~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 175 LSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred CCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 468999999999999999999999999999888764
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-11 Score=116.97 Aligned_cols=214 Identities=14% Similarity=0.040 Sum_probs=129.7
Q ss_pred EEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCC--CCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 379 KWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN--DPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 379 ~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~--~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
+++++..|. +.+++..|.+. ++.|+||++||..+... ...|...+..|+++||.|+.+|+||.|.........
T Consensus 3 ~~l~~~~g~-~~~~~~~p~~~----~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~~ 77 (266)
T TIGR03101 3 FFLDAPHGF-RFCLYHPPVAV----GPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAAA 77 (266)
T ss_pred EEecCCCCc-EEEEEecCCCC----CCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCccccC
Confidence 556666666 55654544432 34689999999433221 122334456888899999999999988653322110
Q ss_pred ccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc----------
Q 006375 457 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM---------- 526 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~---------- 526 (648)
.-....+|+.+++++|.+.+ ..+|.++|+||||.+++.++.++|+.++++|+.+|++......
T Consensus 78 ----~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~~~ 150 (266)
T TIGR03101 78 ----RWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRLVA 150 (266)
T ss_pred ----CHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHHHH
Confidence 11123588999999998764 3689999999999999999999999999999999987633221
Q ss_pred --cCCCCC---------CCcccc-cccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCC-CCccCCchHHHHHHHH
Q 006375 527 --LDPTIP---------LTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLN-DPRVMYSEPAKFVAKL 593 (648)
Q Consensus 527 --~~~~~~---------~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~-D~~v~~~~~~~~~~~l 593 (648)
+....+ +...+. +-.|..--++....|.+.....-+.. .. ++|++.-.- +..-+..-..++.+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 228 (266)
T TIGR03101 151 RRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK-NC-PVHWFEVRPEEGATLSPVFSRLGEQW 228 (266)
T ss_pred HhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC-CC-ceEEEEeccccCCCCCHHHHHHHHHH
Confidence 000000 000000 11122222333344444332211111 33 366665532 2233445678999999
Q ss_pred HhcCCCCCeEEEE
Q 006375 594 REMKTDDNILLFK 606 (648)
Q Consensus 594 ~~~~~~~~~~~~~ 606 (648)
++.|++.+...++
T Consensus 229 ~~~g~~v~~~~~~ 241 (266)
T TIGR03101 229 VQSGVEVTVDLVP 241 (266)
T ss_pred HHcCCeEeeeecC
Confidence 9999887766665
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-12 Score=132.49 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=70.5
Q ss_pred CcEEEEecCCCCCCCCCCCchhHH-------HHHHCCCEEEEEccCCCCCCChhhhhccc-ccCCCCcHhHHHHHH-HHH
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRL-------SLLDRGFIFAIAQIRGGGELGRQWYENGK-FLKKKNTFTDFIACA-EYL 476 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~-------~l~~~G~~v~~~~~rG~g~~g~~~~~~~~-~~~~~~~~~D~~~~~-~~l 476 (648)
.|.||++||..++...+.-..... .+..++|.|+++|+||+|.....- ... .......++|+.+.+ +.+
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~--~~~~~~~~~~~~~~~a~~~~~~l 146 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPS--DGLRAAFPRYDYDDMVEAQYRLV 146 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCC--cCCCCCCCcccHHHHHHHHHHHH
Confidence 578999999766543321011111 123578999999999988653110 000 000124567777544 434
Q ss_pred HHcCCCCCCeEE-EEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 477 IKNCYCTKEKLC-IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 477 ~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
.++-.+ +++. ++|+||||.+++.++.++|++++++|+.++.
T Consensus 147 ~~~lgi--~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~ 188 (360)
T PRK06489 147 TEGLGV--KHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQ 188 (360)
T ss_pred HHhcCC--CceeEEEEECHHHHHHHHHHHhCchhhheeeeeccC
Confidence 443222 5664 8999999999999999999999999987653
|
|
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=122.94 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=74.7
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||..... ..|......| .++|.|+++|.||.|..... ......++++.+.+..+++.- +.+
T Consensus 34 ~~~iv~lHG~~~~~--~~~~~~~~~l-~~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~ 101 (286)
T PRK03204 34 GPPILLCHGNPTWS--FLYRDIIVAL-RDRFRCVAPDYLGFGLSERP-------SGFGYQIDEHARVIGEFVDHL--GLD 101 (286)
T ss_pred CCEEEEECCCCccH--HHHHHHHHHH-hCCcEEEEECCCCCCCCCCC-------CccccCHHHHHHHHHHHHHHh--CCC
Confidence 47899999965322 2244434444 46799999999998865431 111245678888888877653 347
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
++.++|+||||.++..++..+|++++++|+.++.
T Consensus 102 ~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~ 135 (286)
T PRK03204 102 RYLSMGQDWGGPISMAVAVERADRVRGVVLGNTW 135 (286)
T ss_pred CEEEEEECccHHHHHHHHHhChhheeEEEEECcc
Confidence 8999999999999999999999999999877654
|
|
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-11 Score=115.38 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=74.2
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc-CCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN-CYC 482 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~ 482 (648)
+..|+||++||-+....++. .....|+++||.|+++|.||-|..-.. ......++.-+..-+..|++. +
T Consensus 42 ~~gP~illlHGfPe~wyswr--~q~~~la~~~~rviA~DlrGyG~Sd~P------~~~~~Yt~~~l~~di~~lld~Lg-- 111 (322)
T KOG4178|consen 42 GDGPIVLLLHGFPESWYSWR--HQIPGLASRGYRVIAPDLRGYGFSDAP------PHISEYTIDELVGDIVALLDHLG-- 111 (322)
T ss_pred CCCCEEEEEccCCccchhhh--hhhhhhhhcceEEEecCCCCCCCCCCC------CCcceeeHHHHHHHHHHHHHHhc--
Confidence 45799999999887766544 446788999999999999987643221 111223334444433333332 3
Q ss_pred CCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecC
Q 006375 483 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV 517 (648)
Q Consensus 483 d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~ 517 (648)
-+|+.++||++|+.++..++..+|+++.+.|+..
T Consensus 112 -~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~n 145 (322)
T KOG4178|consen 112 -LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLN 145 (322)
T ss_pred -cceeEEEeccchhHHHHHHHHhChhhcceEEEec
Confidence 3899999999999999999999999999988654
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=115.34 Aligned_cols=186 Identities=17% Similarity=0.192 Sum_probs=120.0
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhh---hhcccccCC--CCcHhHHHHHHHHHHH
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW---YENGKFLKK--KNTFTDFIACAEYLIK 478 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~---~~~~~~~~~--~~~~~D~~~~~~~l~~ 478 (648)
...|+||++||-. .....|.+.. .+..-.+.++.++-+-.-+.+..| ...+..+.+ ......+.+.++.+..
T Consensus 16 p~~~~iilLHG~G--gde~~~~~~~-~~~~P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~~ 92 (207)
T COG0400 16 PAAPLLILLHGLG--GDELDLVPLP-ELILPNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELAE 92 (207)
T ss_pred CCCcEEEEEecCC--CChhhhhhhh-hhcCCCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 4468999999943 2233444422 222234666666433222222333 222222211 1233455566666666
Q ss_pred cCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCc
Q 006375 479 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSP 558 (648)
Q Consensus 479 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp 558 (648)
+..+|++|+.+.|+|.|+.+++.++.++|++|+++|+..|.+-... .+
T Consensus 93 ~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~--------------------------------~~ 140 (207)
T COG0400 93 EYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP--------------------------------EL 140 (207)
T ss_pred HhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC--------------------------------cc
Confidence 7778999999999999999999999999999999999988542110 01
Q ss_pred cccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 559 VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 559 ~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
..+. ... |+|++||..|++||..++.++.+.|++.+.+++...+ ..||.... + ++.....|+.+.+
T Consensus 141 ~~~~--~~~-pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~----~~GH~i~~---e---~~~~~~~wl~~~~ 206 (207)
T COG0400 141 LPDL--AGT-PILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWH----EGGHEIPP---E---ELEAARSWLANTL 206 (207)
T ss_pred cccc--CCC-eEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEe----cCCCcCCH---H---HHHHHHHHHHhcc
Confidence 1111 134 4999999999999999999999999999988755544 37996532 2 2224456887654
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=127.22 Aligned_cols=113 Identities=14% Similarity=0.091 Sum_probs=76.1
Q ss_pred CcEEEEecCCCCCCCCC---------CCchhH---HHHHHCCCEEEEEccCC--CCCCCh-hhhhcccc---cCCCCcHh
Q 006375 406 DPLLLYGYGSYEICNDP---------AFNSSR---LSLLDRGFIFAIAQIRG--GGELGR-QWYENGKF---LKKKNTFT 467 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~---------~~~~~~---~~l~~~G~~v~~~~~rG--~g~~g~-~~~~~~~~---~~~~~~~~ 467 (648)
.|.||++||-.++.... .|...+ ..|..++|.|+++|+|| +|..+. ++...+.. .....+++
T Consensus 31 ~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 110 (351)
T TIGR01392 31 SNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIR 110 (351)
T ss_pred CCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHH
Confidence 47899999955533211 123222 25556899999999999 444443 22111111 11235678
Q ss_pred HHHHHHHHHHHcCCCCCCe-EEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 468 DFIACAEYLIKNCYCTKEK-LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 468 D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
|+.+.+..+++.- .-++ +.++|+||||.++..++.++|++++++|+..+..
T Consensus 111 ~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 162 (351)
T TIGR01392 111 DDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSA 162 (351)
T ss_pred HHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCC
Confidence 8887777666553 2367 9999999999999999999999999988877653
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.4e-12 Score=123.49 Aligned_cols=194 Identities=16% Similarity=0.125 Sum_probs=113.3
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||..+.. ..|......|. .+|.|+++|+||.|..... ....++++ ++.+.+.. .+
T Consensus 4 ~~~iv~~HG~~~~~--~~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~---------~~~~~~~~---~~~~~~~~---~~ 65 (245)
T TIGR01738 4 NVHLVLIHGWGMNA--EVFRCLDEELS-AHFTLHLVDLPGHGRSRGF---------GPLSLADA---AEAIAAQA---PD 65 (245)
T ss_pred CceEEEEcCCCCch--hhHHHHHHhhc-cCeEEEEecCCcCccCCCC---------CCcCHHHH---HHHHHHhC---CC
Confidence 37899999954432 23444455554 5799999999998864211 11234444 44444332 26
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccc--cccCCC-----------CC--C--Ccccc---cccCCCC
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT--TMLDPT-----------IP--L--TTAEW---EEWGDPW 545 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~--~~~~~~-----------~~--~--~~~~~---~~~g~~~ 545 (648)
++.++|+|+||.++..++.++|++++++|+..+...+.. .+.... .. . ....+ ...+.+.
T Consensus 66 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (245)
T TIGR01738 66 PAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPT 145 (245)
T ss_pred CeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc
Confidence 899999999999999999999999999887765432110 000000 00 0 00000 0011111
Q ss_pred CH------------------H----HHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeE
Q 006375 546 KE------------------E----FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 603 (648)
Q Consensus 546 ~~------------------~----~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 603 (648)
.. . .+..+...+....+.++++| +|+++|++|..||+...+.+.+.+. ..+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vlii~g~~D~~~~~~~~~~~~~~~~----~~~~~ 220 (245)
T TIGR01738 146 ARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVP-FLRLYGYLDGLVPAKVVPYLDKLAP----HSELY 220 (245)
T ss_pred cchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCC-EEEEeecCCcccCHHHHHHHHHhCC----CCeEE
Confidence 00 0 00111111222345677888 9999999999999887777765553 34455
Q ss_pred EEEecCCCCccCCCchHHHHHH
Q 006375 604 LFKCELGAGHFSKSGRFERLRE 625 (648)
Q Consensus 604 ~~~~~~~~gH~~~~~~~~~~~~ 625 (648)
+++ ++||+......+.+.+
T Consensus 221 ~~~---~~gH~~~~e~p~~~~~ 239 (245)
T TIGR01738 221 IFA---KAAHAPFLSHAEAFCA 239 (245)
T ss_pred EeC---CCCCCccccCHHHHHH
Confidence 665 8899876666554444
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.7e-12 Score=130.47 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=75.8
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
+.|.||++||..+... .|......| .++|.|+++|+||.|..... .....++++.+.+..+.+. .++
T Consensus 130 ~~~~vl~~HG~~~~~~--~~~~~~~~l-~~~~~v~~~d~~g~G~s~~~--------~~~~~~~~~~~~~~~~~~~--~~~ 196 (371)
T PRK14875 130 DGTPVVLIHGFGGDLN--NWLFNHAAL-AAGRPVIALDLPGHGASSKA--------VGAGSLDELAAAVLAFLDA--LGI 196 (371)
T ss_pred CCCeEEEECCCCCccc--hHHHHHHHH-hcCCEEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cCC
Confidence 3578999998554433 234434444 45799999999998876321 1234567877777776654 456
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
.++.++|+|+||+++..++.++|+.++++|+.+|.
T Consensus 197 ~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~ 231 (371)
T PRK14875 197 ERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPA 231 (371)
T ss_pred ccEEEEeechHHHHHHHHHHhCchheeEEEEECcC
Confidence 78999999999999999999999999999988775
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.2e-13 Score=128.88 Aligned_cols=193 Identities=19% Similarity=0.256 Sum_probs=114.4
Q ss_pred EEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEE
Q 006375 409 LLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLC 488 (648)
Q Consensus 409 vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~ 488 (648)
||++||..+.. ..|...+..| .+||.|+++|.||.|.....-. .....+++..+.+..+++.- ..+++.
T Consensus 1 vv~~hG~~~~~--~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~~------~~~~~~~~~~~~l~~~l~~~--~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDPLAEAL-ARGYRVIAFDLPGHGRSDPPPD------YSPYSIEDYAEDLAELLDAL--GIKKVI 69 (228)
T ss_dssp EEEE-STTTTG--GGGHHHHHHH-HTTSEEEEEECTTSTTSSSHSS------GSGGSHHHHHHHHHHHHHHT--TTSSEE
T ss_pred eEEECCCCCCH--HHHHHHHHHH-hCCCEEEEEecCCccccccccc------cCCcchhhhhhhhhhccccc--cccccc
Confidence 78999976554 4466666666 5899999999999886543210 11234555555555555442 227899
Q ss_pred EEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc--------cCCCCC--------CCcccccccCCCCC-HH---
Q 006375 489 IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM--------LDPTIP--------LTTAEWEEWGDPWK-EE--- 548 (648)
Q Consensus 489 i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~--------~~~~~~--------~~~~~~~~~g~~~~-~~--- 548 (648)
++|+|+||.+++.++.++|+.++++|+..|........ +..-.. +....+..+-.... .+
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999887532110 000000 00000000000000 00
Q ss_pred -----HHHHH----HcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCch
Q 006375 549 -----FYFYM----KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGR 619 (648)
Q Consensus 549 -----~~~~~----~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~ 619 (648)
..+.+ ....+...+.++++| +++++|++|..++.....++.+.+. ..++++++ ++||......
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-vl~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~---~~gH~~~~~~ 221 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVP-VLVIHGEDDPIVPPESAEELADKLP----NAELVVIP---GAGHFLFLEQ 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSE-EEEEEETTSSSSHHHHHHHHHHHST----TEEEEEET---TSSSTHHHHS
T ss_pred ccccccccccccccccccccccccccCCC-eEEeecCCCCCCCHHHHHHHHHHCC----CCEEEEEC---CCCCccHHHC
Confidence 00111 112223455566787 9999999999998555555554442 34555554 8999754333
Q ss_pred H
Q 006375 620 F 620 (648)
Q Consensus 620 ~ 620 (648)
.
T Consensus 222 p 222 (228)
T PF12697_consen 222 P 222 (228)
T ss_dssp H
T ss_pred H
Confidence 3
|
... |
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-11 Score=119.25 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=76.2
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
++.|.||++||..+.. ..|......|.++||.|+++|+||.|..... ......++++...+..++++-. .
T Consensus 16 ~~~p~vvliHG~~~~~--~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~-------~~~~~~~~~~~~~l~~~i~~l~-~ 85 (273)
T PLN02211 16 RQPPHFVLIHGISGGS--WCWYKIRCLMENSGYKVTCIDLKSAGIDQSD-------ADSVTTFDEYNKPLIDFLSSLP-E 85 (273)
T ss_pred CCCCeEEEECCCCCCc--CcHHHHHHHHHhCCCEEEEecccCCCCCCCC-------cccCCCHHHHHHHHHHHHHhcC-C
Confidence 4568999999965543 3466666777788999999999998753110 1112455666555554444321 2
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
.+++.++||||||.++..++.++|++++++|..++.
T Consensus 86 ~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 86 NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred CCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 378999999999999999999999999999988664
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=126.91 Aligned_cols=224 Identities=17% Similarity=0.157 Sum_probs=130.4
Q ss_pred CcEEEEecCCCCCCCCCC-----------CchhH---HHHHHCCCEEEEEccCCC-C-CCChhhhhc--ccc---cCCCC
Q 006375 406 DPLLLYGYGSYEICNDPA-----------FNSSR---LSLLDRGFIFAIAQIRGG-G-ELGRQWYEN--GKF---LKKKN 464 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~-----------~~~~~---~~l~~~G~~v~~~~~rG~-g-~~g~~~~~~--~~~---~~~~~ 464 (648)
.|.||++||..++..... |...+ ..+...+|.|+++|++|+ + ..+...... +.. .....
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~ 127 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVI 127 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcC
Confidence 589999999665543211 22221 134357999999999983 2 223221100 000 01135
Q ss_pred cHhHHHHHHHHHHHcCCCCCCe-EEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccc----------ccc--CCC-
Q 006375 465 TFTDFIACAEYLIKNCYCTKEK-LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT----------TML--DPT- 530 (648)
Q Consensus 465 ~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~----------~~~--~~~- 530 (648)
+++|+.+.+..+++.-.+ ++ +.++|+||||.++..++.++|++++++|+.++...... ... +..
T Consensus 128 ~~~~~~~~~~~~l~~l~~--~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 205 (379)
T PRK00175 128 TIRDWVRAQARLLDALGI--TRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSAQNIAFNEVARQAILADPDW 205 (379)
T ss_pred CHHHHHHHHHHHHHHhCC--CCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCHHHHHHHHHHHHHHHhCCCC
Confidence 678888877777765333 56 48999999999999999999999999998875432110 000 000
Q ss_pred ----------CCCC-------------c--ccc-cccCC----C---------CCHHHH------HHHHcCCc-------
Q 006375 531 ----------IPLT-------------T--AEW-EEWGD----P---------WKEEFY------FYMKSYSP------- 558 (648)
Q Consensus 531 ----------~~~~-------------~--~~~-~~~g~----~---------~~~~~~------~~~~~~sp------- 558 (648)
.+.. . ..+ ..++. + ...+.+ .+...+++
T Consensus 206 ~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~ 285 (379)
T PRK00175 206 HGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLRYQGDKFVERFDANSYLYLT 285 (379)
T ss_pred CCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHHHHHHHHhhccCchHHHHHH
Confidence 0000 0 000 00100 0 000000 00111111
Q ss_pred ----------------cccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHH
Q 006375 559 ----------------VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFER 622 (648)
Q Consensus 559 ----------------~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 622 (648)
...++++++| +|+++|++|..+|+..++++.+.+...+...++++++ +++||.......+.
T Consensus 286 ~~~~~~d~~~~~~~d~~~~l~~I~~P-tLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~--~~~GH~~~le~p~~ 362 (379)
T PRK00175 286 RALDYFDPARGRGGDLAAALARIKAR-FLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEID--SPYGHDAFLLDDPR 362 (379)
T ss_pred HHHHhccccCCCCCCHHHHHhcCCCC-EEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeC--CCCCchhHhcCHHH
Confidence 1234567898 9999999999999999999999998766554545453 37899776666654
Q ss_pred HHHHHHHHHHHHHh
Q 006375 623 LREAAFTYTFLMRA 636 (648)
Q Consensus 623 ~~~~~~~~~fl~~~ 636 (648)
+.. .+.+||.+.
T Consensus 363 ~~~--~L~~FL~~~ 374 (379)
T PRK00175 363 YGR--LVRAFLERA 374 (379)
T ss_pred HHH--HHHHHHHhh
Confidence 444 456888764
|
|
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-11 Score=126.66 Aligned_cols=210 Identities=20% Similarity=0.215 Sum_probs=143.8
Q ss_pred cceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCC-CCCC-CCCCchh----HHHHHHCCCEEEEEccCCCC
Q 006375 374 YFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSY-EICN-DPAFNSS----RLSLLDRGFIFAIAQIRGGG 447 (648)
Q Consensus 374 ~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~-~~~~-~~~~~~~----~~~l~~~G~~v~~~~~rG~g 447 (648)
+..+.+.++..||++|...++.|++. ++.|+++..+=.+ .... ....... ...|+.+||+|+..|+||.+
T Consensus 17 ~~~~~v~V~MRDGvrL~~dIy~Pa~~----g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~ 92 (563)
T COG2936 17 YIERDVMVPMRDGVRLAADIYRPAGA----GPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRG 92 (563)
T ss_pred eeeeeeeEEecCCeEEEEEEEccCCC----CCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccc
Confidence 56678899999999999999999875 7899999887221 1111 0111111 13688999999999999999
Q ss_pred CCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc
Q 006375 448 ELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527 (648)
Q Consensus 448 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~ 527 (648)
++...|... .. ...+|-.++|+||.++.+.| .+|+.+|.|++|+...++|+..|.-.||++...+..|+.+...
T Consensus 93 ~SeG~~~~~----~~-~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d~~ 166 (563)
T COG2936 93 GSEGVFDPE----SS-REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRDDA 166 (563)
T ss_pred cCCccccee----cc-ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeecccccccccccccc
Confidence 876665422 11 36689999999999999876 7999999999999998888887777899999999888554321
Q ss_pred CCC------------------CCCC--------------c--cccccc------CCCCC-------HHHHHHHHcCCccc
Q 006375 528 DPT------------------IPLT--------------T--AEWEEW------GDPWK-------EEFYFYMKSYSPVD 560 (648)
Q Consensus 528 ~~~------------------~~~~--------------~--~~~~~~------g~~~~-------~~~~~~~~~~sp~~ 560 (648)
..+ .+++ . ..|.+. +.|.. +....++++.+-..
T Consensus 167 ~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW~~~~~~~ 246 (563)
T COG2936 167 FYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFWRRGDRVA 246 (563)
T ss_pred ccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchhhccCccc
Confidence 000 0000 0 001000 11110 11111344455556
Q ss_pred cCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhc
Q 006375 561 NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREM 596 (648)
Q Consensus 561 ~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~ 596 (648)
...++++| +|++.|..|. -....-++++.++..
T Consensus 247 d~~~i~vP-~L~i~gW~D~--~l~~~~~~~~~~~~r 279 (563)
T COG2936 247 DLSKIKVP-ALVIGGWSDG--YLHTAIKLFAFLRSR 279 (563)
T ss_pred ccccCCCc-EEEEcccccc--cccchHHHhhhcccC
Confidence 67788998 9999999996 355677888888764
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=122.19 Aligned_cols=194 Identities=14% Similarity=0.149 Sum_probs=115.5
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||..+... .|......|. ..|.|+++|.||.|.... + ....++++.. .+.+.. .+
T Consensus 13 ~~~ivllHG~~~~~~--~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~-~--------~~~~~~~~~~---~l~~~~---~~ 74 (256)
T PRK10349 13 NVHLVLLHGWGLNAE--VWRCIDEELS-SHFTLHLVDLPGFGRSRG-F--------GALSLADMAE---AVLQQA---PD 74 (256)
T ss_pred CCeEEEECCCCCChh--HHHHHHHHHh-cCCEEEEecCCCCCCCCC-C--------CCCCHHHHHH---HHHhcC---CC
Confidence 357999999544433 3555555654 569999999999886521 1 1134445443 344432 37
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc----cCC--------CCC--C--Ccccc---cccCCCC-
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM----LDP--------TIP--L--TTAEW---EEWGDPW- 545 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~----~~~--------~~~--~--~~~~~---~~~g~~~- 545 (648)
++.++|+|+||.++..++.++|++++++|+..+..-..... ... .+. . ....+ ..++.+.
T Consensus 75 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
T PRK10349 75 KAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETA 154 (256)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchH
Confidence 89999999999999999999999999998876532111000 000 000 0 00000 0011110
Q ss_pred CHH---------------------HHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEE
Q 006375 546 KEE---------------------FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILL 604 (648)
Q Consensus 546 ~~~---------------------~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 604 (648)
..+ ....+...+....+.++++| +|+++|++|..+|...+..+.+.+. ..++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~~~i~----~~~~~~ 229 (256)
T PRK10349 155 RQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMP-FLRLYGYLDGLVPRKVVPMLDKLWP----HSESYI 229 (256)
T ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCC-eEEEecCCCccCCHHHHHHHHHhCC----CCeEEE
Confidence 000 00111223333456667898 9999999999998877665555543 345667
Q ss_pred EEecCCCCccCCCchHHHHHH
Q 006375 605 FKCELGAGHFSKSGRFERLRE 625 (648)
Q Consensus 605 ~~~~~~~gH~~~~~~~~~~~~ 625 (648)
++ ++||+.....++.+..
T Consensus 230 i~---~~gH~~~~e~p~~f~~ 247 (256)
T PRK10349 230 FA---KAAHAPFISHPAEFCH 247 (256)
T ss_pred eC---CCCCCccccCHHHHHH
Confidence 75 8999887777665554
|
|
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.3e-12 Score=129.06 Aligned_cols=111 Identities=17% Similarity=0.103 Sum_probs=67.5
Q ss_pred CCcEEEEecCCCCCCCCCCCchh-HHHHHHCCCEEEEEccCCCCCCChhhhhccc-ccC--CCCcH-hHHHHHHHHHHH-
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSS-RLSLLDRGFIFAIAQIRGGGELGRQWYENGK-FLK--KKNTF-TDFIACAEYLIK- 478 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~-~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~-~~~--~~~~~-~D~~~~~~~l~~- 478 (648)
+.|+||+.||..+....+.+... ...|...+|.|+++|.||.|........... ... ....+ +|+.+....|.+
T Consensus 40 ~~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (339)
T PRK07581 40 KDNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEK 119 (339)
T ss_pred CCCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHH
Confidence 44777777775443322211100 1245557899999999999865432110000 000 00122 444444444554
Q ss_pred cCCCCCCeE-EEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 479 NCYCTKEKL-CIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 479 ~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
.+. +++ .++|+||||.++..++.++|++++++|+.++
T Consensus 120 lgi---~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~ 157 (339)
T PRK07581 120 FGI---ERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAG 157 (339)
T ss_pred hCC---CceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeec
Confidence 332 674 7899999999999999999999999887754
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.9e-11 Score=115.53 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=70.8
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCe
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 486 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 486 (648)
|.||++||..+... .|...+..| ++|.|+++|+||.|..... . ...++++.+.+..+++.. +.++
T Consensus 3 p~vvllHG~~~~~~--~w~~~~~~l--~~~~vi~~D~~G~G~S~~~-------~--~~~~~~~~~~l~~~l~~~--~~~~ 67 (242)
T PRK11126 3 PWLVFLHGLLGSGQ--DWQPVGEAL--PDYPRLYIDLPGHGGSAAI-------S--VDGFADVSRLLSQTLQSY--NILP 67 (242)
T ss_pred CEEEEECCCCCChH--HHHHHHHHc--CCCCEEEecCCCCCCCCCc-------c--ccCHHHHHHHHHHHHHHc--CCCC
Confidence 78999999766543 455555555 4799999999998865421 0 124555555555555432 3479
Q ss_pred EEEEeeChhHHHHHHHHhhCCC-ceeEEEecCCcc
Q 006375 487 LCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAVPFV 520 (648)
Q Consensus 487 i~i~G~S~GG~l~~~~~~~~p~-~~~a~v~~~~~~ 520 (648)
+.++|+||||.+++.++.++|+ +++++++.++..
T Consensus 68 ~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~ 102 (242)
T PRK11126 68 YWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNP 102 (242)
T ss_pred eEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCC
Confidence 9999999999999999999865 499988876543
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.29 E-value=9e-11 Score=121.77 Aligned_cols=95 Identities=13% Similarity=0.066 Sum_probs=66.1
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHh----HHHHHHHHHHHcCCC
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFT----DFIACAEYLIKNCYC 482 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~----D~~~~~~~l~~~~~~ 482 (648)
|.||++||..+.. ..|......|+ ++|.|+++|+||.|....... ....+ |+.+.++.+.
T Consensus 87 ~~vvliHG~~~~~--~~w~~~~~~l~-~~~~v~~~D~~G~G~S~~~~~--------~~~~~~~a~~l~~~i~~~~----- 150 (354)
T PLN02578 87 LPIVLIHGFGASA--FHWRYNIPELA-KKYKVYALDLLGFGWSDKALI--------EYDAMVWRDQVADFVKEVV----- 150 (354)
T ss_pred CeEEEECCCCCCH--HHHHHHHHHHh-cCCEEEEECCCCCCCCCCccc--------ccCHHHHHHHHHHHHHHhc-----
Confidence 5689999954432 22444444554 579999999999887654321 11222 3333333332
Q ss_pred CCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 483 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 483 d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
.+++.++|+|+||+++..++.++|++++++|+.++
T Consensus 151 -~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~ 185 (354)
T PLN02578 151 -KEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNS 185 (354)
T ss_pred -cCCeEEEEECHHHHHHHHHHHhChHhcceEEEECC
Confidence 36799999999999999999999999999998765
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.3e-10 Score=115.75 Aligned_cols=200 Identities=15% Similarity=0.098 Sum_probs=137.1
Q ss_pred eeEEeCCCCCEEEEEEeC-C----------------------------C--CeEEEEEEEECCCCCeeecc-------cc
Q 006375 84 GCFQVSPDNKLVAYAEDT-K----------------------------G--DEIYTVYVIDIETGTPVGKP-------LV 125 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~-~----------------------------G--~e~~~l~v~dl~~g~~~~~~-------~~ 125 (648)
..+.|||||++|||..-. . | +....|+|+|+++++..... ..
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~ 183 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQD 183 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCc
Confidence 478999999999998521 1 1 12468899999999864221 12
Q ss_pred CccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeE---EEEEeC-CCCcEEEEEEccccccE
Q 006375 126 GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYS---LGLQAS-ESKKFLFIASESKITRF 200 (648)
Q Consensus 126 ~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~s-~Dg~~l~~~~~~~~~~~ 200 (648)
.....+.|++|+ .|++...++......+.+.+..++ ...++.++....|. ..+.+. +++..+++.+...+..+
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg--~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTG--ETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTT--TCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCC--ceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 235679999999 799998887777778888898886 34555666555552 133444 77777777777767899
Q ss_pred EEEEECCCCCceeEeeecccce--eeeEeecCCEEEEEeccCCCCCcEEEEEeCC-CCCcceeEecCCCCcccceEEEeC
Q 006375 201 VFYLDVSKPEELRVLTPRVVGV--DTAASHRGNHFFITRRSDELFNSELLACPVD-NTSETTVLIPHRESVKLQDIQLFI 277 (648)
Q Consensus 201 l~~~dl~~~~~~~~l~~~~~~~--~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 277 (648)
||+++.+++. .+.|+.+...+ ...++++++.|||+++.++....+||+++++ + +..+.++.......-..+++++
T Consensus 262 ly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 262 LYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-GEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp EEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET-TEEEESSTTSSTTEEEEE-TTS
T ss_pred EEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC-CCeEeccCCCCCceEEEECCCC
Confidence 9999999987 78888776554 3569999999999999866677899999998 5 3444344333222134566666
Q ss_pred CEEEEEEecC
Q 006375 278 DHLAVYEREG 287 (648)
Q Consensus 278 ~~l~~~~~~~ 287 (648)
+++++.+..-
T Consensus 340 ~y~v~~~s~~ 349 (353)
T PF00930_consen 340 KYYVDTYSGP 349 (353)
T ss_dssp SEEEEEEESS
T ss_pred CEEEEEEcCC
Confidence 7777666543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=120.77 Aligned_cols=185 Identities=16% Similarity=0.091 Sum_probs=106.9
Q ss_pred HHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCe-EEEEeeChhHHHHHHHHhhCCCc
Q 006375 431 LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK-LCIEGRSAGGLLIGAVLNMRPDL 509 (648)
Q Consensus 431 l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~ 509 (648)
|...+|.|+++|.||.|+... ....++|+.+.+..+++.-.+ ++ +.++|+||||++++.++.++|++
T Consensus 95 L~~~~~~Vi~~Dl~G~g~s~~----------~~~~~~~~a~dl~~ll~~l~l--~~~~~lvG~SmGG~vA~~~A~~~P~~ 162 (343)
T PRK08775 95 LDPARFRLLAFDFIGADGSLD----------VPIDTADQADAIALLLDALGI--ARLHAFVGYSYGALVGLQFASRHPAR 162 (343)
T ss_pred cCccccEEEEEeCCCCCCCCC----------CCCCHHHHHHHHHHHHHHcCC--CcceEEEEECHHHHHHHHHHHHChHh
Confidence 444689999999998764311 112345555555555543222 45 57999999999999999999999
Q ss_pred eeEEEecCCcccccc----------cc--cCCC--CC--------------C-Ccccc-cccCCCC-------CHHHH--
Q 006375 510 FKAAVAAVPFVDVLT----------TM--LDPT--IP--------------L-TTAEW-EEWGDPW-------KEEFY-- 550 (648)
Q Consensus 510 ~~a~v~~~~~~d~~~----------~~--~~~~--~~--------------~-~~~~~-~~~g~~~-------~~~~~-- 550 (648)
++++|+.++...... .. .... .. . ....+ ..+.... .....
T Consensus 163 V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
T PRK08775 163 VRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAEDY 242 (343)
T ss_pred hheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHHH
Confidence 999998876432110 00 0000 00 0 00000 0111100 00000
Q ss_pred ------HHHHcCCc-------------cccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCC
Q 006375 551 ------FYMKSYSP-------------VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 611 (648)
Q Consensus 551 ------~~~~~~sp-------------~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 611 (648)
......++ ...+.++++| +|+++|++|..+|+.++.++.+++.. ..++++++ .++
T Consensus 243 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~P-tLvi~G~~D~~~p~~~~~~~~~~i~p---~a~l~~i~--~~a 316 (343)
T PRK08775 243 LDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVP-TVVVAVEGDRLVPLADLVELAEGLGP---RGSLRVLR--SPY 316 (343)
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCC-eEEEEeCCCEeeCHHHHHHHHHHcCC---CCeEEEEe--CCc
Confidence 01111111 1135567888 99999999999998888888777642 24456664 138
Q ss_pred CccCCCchHHHHHHHHHHHHHHHH
Q 006375 612 GHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 612 gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
||......++.++. .+.+||.+
T Consensus 317 GH~~~lE~Pe~~~~--~l~~FL~~ 338 (343)
T PRK08775 317 GHDAFLKETDRIDA--ILTTALRS 338 (343)
T ss_pred cHHHHhcCHHHHHH--HHHHHHHh
Confidence 99876666665554 34677754
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.2e-11 Score=111.89 Aligned_cols=144 Identities=22% Similarity=0.208 Sum_probs=77.7
Q ss_pred HhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc--CC---CCCCCcccc--
Q 006375 466 FTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML--DP---TIPLTTAEW-- 538 (648)
Q Consensus 466 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~--~~---~~~~~~~~~-- 538 (648)
++=|..|++||.++..+++++|+|+|.|.||-+|+.++...| .++|+|+.+|..-+..... .. .+|......
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 466889999999999999999999999999999999999998 6999999988543332110 10 111111100
Q ss_pred ---cccCCCCCHHHHHHH------HcCCccccCCCCCCCeEEEeecCCCCccCCc-hHHHHHHHHHhcCCCCCeEEEEec
Q 006375 539 ---EEWGDPWKEEFYFYM------KSYSPVDNVKAQNYPHILVTAGLNDPRVMYS-EPAKFVAKLREMKTDDNILLFKCE 608 (648)
Q Consensus 539 ---~~~g~~~~~~~~~~~------~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 608 (648)
..-+.......+... .+.-| +.++++| +|+++|++|...|-. .+..+.++|++++.+.+...+. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~Ip---vE~i~~p-iLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~-Y 156 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIP---VEKIKGP-ILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLS-Y 156 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB-----GGG--SE-EEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEE-E
T ss_pred ceecCCcceehhhhhhccccccccccccc---HHHcCCC-EEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEE-c
Confidence 000110000000000 11123 4455787 999999999988754 4446667888888774333322 2
Q ss_pred CCCCccC
Q 006375 609 LGAGHFS 615 (648)
Q Consensus 609 ~~~gH~~ 615 (648)
+++||..
T Consensus 157 ~~aGH~i 163 (213)
T PF08840_consen 157 PGAGHLI 163 (213)
T ss_dssp TTB-S--
T ss_pred CCCCcee
Confidence 4999953
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=114.49 Aligned_cols=201 Identities=20% Similarity=0.280 Sum_probs=120.0
Q ss_pred HHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHH-cCCCCCCeEEEEeeChhHHHHHHHHhh-
Q 006375 428 RLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK-NCYCTKEKLCIEGRSAGGLLIGAVLNM- 505 (648)
Q Consensus 428 ~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~d~~~i~i~G~S~GG~l~~~~~~~- 505 (648)
...|+++||+|+++||-|-|. .|.. +. .....+-|.+.|++.+.. .+.....+++++|+|.||..+++++..
T Consensus 19 l~~~L~~GyaVv~pDY~Glg~---~y~~-~~--~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~ 92 (290)
T PF03583_consen 19 LAAWLARGYAVVAPDYEGLGT---PYLN-GR--SEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELA 92 (290)
T ss_pred HHHHHHCCCEEEecCCCCCCC---cccC-cH--hHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHh
Confidence 467889999999999998765 3311 11 111233455555554444 243345799999999999988777644
Q ss_pred ---CCCc---eeEEEecCCcccccccccCC-CCCCCc----------ccccc----------------------------
Q 006375 506 ---RPDL---FKAAVAAVPFVDVLTTMLDP-TIPLTT----------AEWEE---------------------------- 540 (648)
Q Consensus 506 ---~p~~---~~a~v~~~~~~d~~~~~~~~-~~~~~~----------~~~~~---------------------------- 540 (648)
.||+ +.++++..|..|+...+..- ..+... ..+.+
T Consensus 93 ~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~~ 172 (290)
T PF03583_consen 93 PSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLADI 172 (290)
T ss_pred HHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHHH
Confidence 4665 78999999988866543210 000000 00000
Q ss_pred --------c--C-----CC-----CCHHHHHHHHcCCc-cccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcC-C
Q 006375 541 --------W--G-----DP-----WKEEFYFYMKSYSP-VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMK-T 598 (648)
Q Consensus 541 --------~--g-----~~-----~~~~~~~~~~~~sp-~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~-~ 598 (648)
. + .+ .++...+.+...+. +..-...+.| |+|.||.+|..||+....++++++++.| .
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~P-v~i~~g~~D~vvP~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 173 VAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVP-VLIYQGTADEVVPPADTDALVAKWCAAGGA 251 (290)
T ss_pred HHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCC-EEEEecCCCCCCChHHHHHHHHHHHHcCCC
Confidence 0 0 00 01111112222211 0001122667 9999999999999999999999999999 6
Q ss_pred CCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCCCCC
Q 006375 599 DDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSV 643 (648)
Q Consensus 599 ~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 643 (648)
+.++..+ ...+|.... .....+.++||..+|...+.+
T Consensus 252 ~V~~~~~---~~~~H~~~~-----~~~~~~a~~Wl~~rf~G~~~~ 288 (290)
T PF03583_consen 252 DVEYVRY---PGGGHLGAA-----FASAPDALAWLDDRFAGKPAT 288 (290)
T ss_pred CEEEEec---CCCChhhhh-----hcCcHHHHHHHHHHHCCCCCC
Confidence 7554444 477895421 112235689999999876554
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=103.18 Aligned_cols=199 Identities=20% Similarity=0.187 Sum_probs=133.3
Q ss_pred CCCcEEEEecCCCCCCCCCCCchh-HHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSS-RLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 482 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~-~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 482 (648)
...|+++++||||+.......... ......+||+|+.++|--+..- ..-...+.|+...++|+.+.. -
T Consensus 65 ~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q~----------htL~qt~~~~~~gv~filk~~-~ 133 (270)
T KOG4627|consen 65 NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQV----------HTLEQTMTQFTHGVNFILKYT-E 133 (270)
T ss_pred CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCccc----------ccHHHHHHHHHHHHHHHHHhc-c
Confidence 346899999999988766544433 3567788999999987543310 111246789999999988753 3
Q ss_pred CCCeEEEEeeChhHHHHHHHHhh-CCCceeEEEecCCcccccccccCCCCCCCcccccccCCCC--CHHHHHHHHcCCc-
Q 006375 483 TKEKLCIEGRSAGGLLIGAVLNM-RPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPW--KEEFYFYMKSYSP- 558 (648)
Q Consensus 483 d~~~i~i~G~S~GG~l~~~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~sp- 558 (648)
+.+.|.+.|||+|+.|++.+.++ +..++.++++.+|++|+..... .++|+.- ..+. ...-|+
T Consensus 134 n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~-----------te~g~dlgLt~~~---ae~~Scd 199 (270)
T KOG4627|consen 134 NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSN-----------TESGNDLGLTERN---AESVSCD 199 (270)
T ss_pred cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhC-----------CccccccCcccch---hhhcCcc
Confidence 55789999999999999866654 4448999999999999754321 1222210 0111 122333
Q ss_pred cccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 559 VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 559 ~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
+...+..+.| +||+.+++|.---++|.+.|+..++++. +.+++ +.+|+.... +......++..|+++.+
T Consensus 200 l~~~~~v~~~-ilVv~~~~espklieQnrdf~~q~~~a~----~~~f~---n~~hy~I~~--~~~~~~s~~~~~~~~~~ 268 (270)
T KOG4627|consen 200 LWEYTDVTVW-ILVVAAEHESPKLIEQNRDFADQLRKAS----FTLFK---NYDHYDIIE--ETAIDDSDVSRFLRNIE 268 (270)
T ss_pred HHHhcCceee-eeEeeecccCcHHHHhhhhHHHHhhhcc----eeecC---CcchhhHHH--HhccccchHHHHHHHHh
Confidence 3444555777 9999999998877999999999998754 34566 678864322 12223345677777643
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.3e-10 Score=98.64 Aligned_cols=217 Identities=15% Similarity=0.154 Sum_probs=133.8
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
..+.++...+.++-+. ++ ..+..-++|++||.-...........+..+...|+.++.+|++|.|+.-..++-
T Consensus 11 ~~ivi~n~~ne~lvg~-lh------~tgs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~- 82 (269)
T KOG4667|consen 11 QKIVIPNSRNEKLVGL-LH------ETGSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYY- 82 (269)
T ss_pred eEEEeccCCCchhhcc-ee------ccCCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCcccc-
Confidence 4445555555444442 21 124567999999943222222222334577778999999999999987666652
Q ss_pred ccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcc
Q 006375 457 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTA 536 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~ 536 (648)
.+.....+|+..+++++... +..--+|+|||-||..+...+..+++ ++-+|..+|-.|.....- +.+.-...
T Consensus 83 ---Gn~~~eadDL~sV~q~~s~~---nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~-eRlg~~~l 154 (269)
T KOG4667|consen 83 ---GNYNTEADDLHSVIQYFSNS---NRVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGIN-ERLGEDYL 154 (269)
T ss_pred ---CcccchHHHHHHHHHHhccC---ceEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchh-hhhcccHH
Confidence 22223459999999999873 23345799999999999999998876 677788888777554331 11110011
Q ss_pred cc-c------------ccCCCCCHHHH-HHHHc-CCcc-ccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCC
Q 006375 537 EW-E------------EWGDPWKEEFY-FYMKS-YSPV-DNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 600 (648)
Q Consensus 537 ~~-~------------~~g~~~~~~~~-~~~~~-~sp~-~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~ 600 (648)
+| . +|+.-+.++.. ..+.. .++. ..| .++|| ||-+||..|..||.+.+.+|++.+.. +
T Consensus 155 ~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkI-d~~C~-VLTvhGs~D~IVPve~AkefAk~i~n----H 228 (269)
T KOG4667|consen 155 ERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKI-DKQCR-VLTVHGSEDEIVPVEDAKEFAKIIPN----H 228 (269)
T ss_pred HHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCc-CccCc-eEEEeccCCceeechhHHHHHHhccC----C
Confidence 11 1 11111222221 11110 1111 123 23898 99999999999999999999888764 4
Q ss_pred CeEEEEecCCCCccCCCc
Q 006375 601 NILLFKCELGAGHFSKSG 618 (648)
Q Consensus 601 ~~~~~~~~~~~gH~~~~~ 618 (648)
++.+++ ++.|.....
T Consensus 229 ~L~iIE---gADHnyt~~ 243 (269)
T KOG4667|consen 229 KLEIIE---GADHNYTGH 243 (269)
T ss_pred ceEEec---CCCcCccch
Confidence 455554 999976443
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-09 Score=105.36 Aligned_cols=204 Identities=19% Similarity=0.189 Sum_probs=121.1
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHH-HcCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLI-KNCYCT 483 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~-~~~~~d 483 (648)
..+.+|++|| ||.+.. -|-..+..|+. ...|.++|..|-|...+.=-. ......-..+++.++.-. +.+.
T Consensus 89 ~~~plVliHG-yGAg~g-~f~~Nf~~La~-~~~vyaiDllG~G~SSRP~F~----~d~~~~e~~fvesiE~WR~~~~L-- 159 (365)
T KOG4409|consen 89 NKTPLVLIHG-YGAGLG-LFFRNFDDLAK-IRNVYAIDLLGFGRSSRPKFS----IDPTTAEKEFVESIEQWRKKMGL-- 159 (365)
T ss_pred CCCcEEEEec-cchhHH-HHHHhhhhhhh-cCceEEecccCCCCCCCCCCC----CCcccchHHHHHHHHHHHHHcCC--
Confidence 3456788888 443322 24444556666 899999999988865543111 222233456777776444 4443
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCC----C---------------CCCcccc-cccC-
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPT----I---------------PLTTAEW-EEWG- 542 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~----~---------------~~~~~~~-~~~g- 542 (648)
.++.|+|||+||+|+..+|..+|++++.+|+..|.-=..+...++. . |+....+ .-||
T Consensus 160 -~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp 238 (365)
T KOG4409|consen 160 -EKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGP 238 (365)
T ss_pred -cceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccch
Confidence 6999999999999999999999999999999988532211100000 0 0000000 0011
Q ss_pred ---------------------------------CCCCHHHHHHHHc-----CCc-cccCCCC--CCCeEEEeecCCCCcc
Q 006375 543 ---------------------------------DPWKEEFYFYMKS-----YSP-VDNVKAQ--NYPHILVTAGLNDPRV 581 (648)
Q Consensus 543 ---------------------------------~~~~~~~~~~~~~-----~sp-~~~~~~~--~~P~~li~~g~~D~~v 581 (648)
+|..+..+..|.+ -.| +++++.. ++| +++++|++|..
T Consensus 239 ~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~p-v~fiyG~~dWm- 316 (365)
T KOG4409|consen 239 KLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVP-VTFIYGDRDWM- 316 (365)
T ss_pred HHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCC-EEEEecCcccc-
Confidence 1111122222211 112 2344444 488 99999999974
Q ss_pred CCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHH
Q 006375 582 MYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLRE 625 (648)
Q Consensus 582 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~ 625 (648)
...-+.++...+. ...++.+.++ ++||..-.++++.+++
T Consensus 317 D~~~g~~~~~~~~--~~~~~~~~v~---~aGHhvylDnp~~Fn~ 355 (365)
T KOG4409|consen 317 DKNAGLEVTKSLM--KEYVEIIIVP---GAGHHVYLDNPEFFNQ 355 (365)
T ss_pred cchhHHHHHHHhh--cccceEEEec---CCCceeecCCHHHHHH
Confidence 5566667766663 3345556665 9999877777777776
|
|
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.5e-11 Score=104.58 Aligned_cols=210 Identities=18% Similarity=0.252 Sum_probs=128.5
Q ss_pred eEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCc--hhHHHHHH-CCCEEEEEcc--CCCCCCCh--hh------
Q 006375 387 TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN--SSRLSLLD-RGFIFAIAQI--RGGGELGR--QW------ 453 (648)
Q Consensus 387 ~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~--~~~~~l~~-~G~~v~~~~~--rG~g~~g~--~~------ 453 (648)
..+..-++.|++. ..+++.|++.++.|-... ...|. ..++..++ .|.+|+.||- ||-.--|. +|
T Consensus 26 c~Mtf~vylPp~a-~~~k~~P~lf~LSGLTCT--~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GA 102 (283)
T KOG3101|consen 26 CSMTFGVYLPPDA-PRGKRCPVLFYLSGLTCT--HENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGA 102 (283)
T ss_pred cceEEEEecCCCc-ccCCcCceEEEecCCccc--chhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCc
Confidence 4455566778775 455669999999984322 22222 22344444 5999999985 66332221 22
Q ss_pred --hhcccccCCCCcHhHHHHHHHHHHH-----cCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc
Q 006375 454 --YENGKFLKKKNTFTDFIACAEYLIK-----NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM 526 (648)
Q Consensus 454 --~~~~~~~~~~~~~~D~~~~~~~l~~-----~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~ 526 (648)
+-....+.-.+.+.-...+++.|.+ .-.+|+.+++|.||||||+-|+....++|.+++.+-+.+|++++..
T Consensus 103 GFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~-- 180 (283)
T KOG3101|consen 103 GFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPIN-- 180 (283)
T ss_pred eeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCccc--
Confidence 2111111111223333444444433 2358999999999999999998888899999999999999998764
Q ss_pred cCCCCCCCccccccc-CCCCCHHHHHHHHcCCccccCCCC---CCCeEEEeecCCCCccC-CchHHHHHHHHHhcCCCCC
Q 006375 527 LDPTIPLTTAEWEEW-GDPWKEEFYFYMKSYSPVDNVKAQ---NYPHILVTAGLNDPRVM-YSEPAKFVAKLREMKTDDN 601 (648)
Q Consensus 527 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~~---~~P~~li~~g~~D~~v~-~~~~~~~~~~l~~~~~~~~ 601 (648)
.|+....+.-| |+ ++..+ ..|++-+-|++. .. .+||-+|..|...+ ---+..+.++..+. ...
T Consensus 181 ----cpWGqKAf~gYLG~--~ka~W---~~yDat~lik~y~~~~~-~ilIdqG~~D~Fl~~qLlPe~l~~a~~~~--~~~ 248 (283)
T KOG3101|consen 181 ----CPWGQKAFTGYLGD--NKAQW---EAYDATHLIKNYRGVGD-DILIDQGAADNFLAEQLLPENLLEACKAT--WQA 248 (283)
T ss_pred ----CcchHHHhhcccCC--ChHHH---hhcchHHHHHhcCCCCc-cEEEecCccchhhhhhcChHHHHHHhhcc--ccc
Confidence 34444444333 43 44443 556665545444 23 49999999999866 22344555555433 223
Q ss_pred eEEEEecCCCCc
Q 006375 602 ILLFKCELGAGH 613 (648)
Q Consensus 602 ~~~~~~~~~~gH 613 (648)
+++++..++-.|
T Consensus 249 ~v~~r~~~gyDH 260 (283)
T KOG3101|consen 249 PVVFRLQEGYDH 260 (283)
T ss_pred cEEEEeecCCCc
Confidence 577776667777
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.2e-10 Score=115.26 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=75.8
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||...... .|...+..|. .+|.|+++|+||.|.....-.. ......++++...+..++++- ..+
T Consensus 127 ~~~ivllHG~~~~~~--~w~~~~~~L~-~~~~Via~DlpG~G~S~~p~~~----~~~~ys~~~~a~~l~~~i~~l--~~~ 197 (383)
T PLN03084 127 NPPVLLIHGFPSQAY--SYRKVLPVLS-KNYHAIAFDWLGFGFSDKPQPG----YGFNYTLDEYVSSLESLIDEL--KSD 197 (383)
T ss_pred CCeEEEECCCCCCHH--HHHHHHHHHh-cCCEEEEECCCCCCCCCCCccc----ccccCCHHHHHHHHHHHHHHh--CCC
Confidence 578999999654332 3555555554 5899999999998865332110 011245667666666665542 236
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
++.++|+|+||.++..++.++|++++++|+.+|..
T Consensus 198 ~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 198 KVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred CceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 89999999999999999999999999999888764
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-11 Score=118.51 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=89.7
Q ss_pred CeEEeEEEEEeeCccccCCCCcEEEEecCC-CCCCCCCCCchhHHHHHHCC----CEEEEEccCCCCCCChhhhhc----
Q 006375 386 GTQIPICIVYRKNLVKLDGSDPLLLYGYGS-YEICNDPAFNSSRLSLLDRG----FIFAIAQIRGGGELGRQWYEN---- 456 (648)
Q Consensus 386 g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg-~~~~~~~~~~~~~~~l~~~G----~~v~~~~~rG~g~~g~~~~~~---- 456 (648)
|....++++.|++. ...+++|+|++.||. .... ..........+++.| .++++++.-+.......|...
T Consensus 5 g~~~~~~VylP~~y-~~~~~~PvlylldG~~~~~~-~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~ 82 (251)
T PF00756_consen 5 GRDRRVWVYLPPGY-DPSKPYPVLYLLDGQSGWFR-NGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSS 82 (251)
T ss_dssp TEEEEEEEEECTTG-GTTTTEEEEEEESHTTHHHH-HHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTT
T ss_pred CCeEEEEEEECCCC-CCCCCCEEEEEccCCccccc-cchHHHHHHHHHHhCCCCceEEEEEecccccccccccccccccc
Confidence 66788999999997 677889999999994 1100 000111122344444 455555554444233334421
Q ss_pred --ccccCCCCcHhHHH--HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccc
Q 006375 457 --GKFLKKKNTFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVL 523 (648)
Q Consensus 457 --~~~~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~ 523 (648)
.....+...+.+++ +.+.++.++..+++.+.+|+|+||||+.++.++.++|++|.++++.+|.++..
T Consensus 83 ~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~ 153 (251)
T PF00756_consen 83 RRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS 153 (251)
T ss_dssp CBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT
T ss_pred cccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc
Confidence 01111112344544 56777777777777779999999999999999999999999999999987754
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.3e-09 Score=108.12 Aligned_cols=202 Identities=15% Similarity=0.111 Sum_probs=118.8
Q ss_pred EEEEEeCC-CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCC----CEEEEEccCCCCCCCh
Q 006375 377 ERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRG----FIFAIAQIRGGGELGR 451 (648)
Q Consensus 377 ~~~~~~s~-~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G----~~v~~~~~rG~g~~g~ 451 (648)
+.+.+.|. -|.+..++++.|++. . .+++|+|+++||........ .......|+++| .+|+++|...+.....
T Consensus 181 ~~~~~~S~~Lg~~r~v~VY~P~~y-~-~~~~PvlyllDG~~w~~~~~-~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~ 257 (411)
T PRK10439 181 KEIIWKSERLGNSRRVWIYTTGDA-A-PEERPLAILLDGQFWAESMP-VWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQ 257 (411)
T ss_pred EEEEEEccccCCceEEEEEECCCC-C-CCCCCEEEEEECHHhhhcCC-HHHHHHHHHHcCCCCceEEEEECCCCcccccc
Confidence 44445443 466688888888876 4 46799999999976443222 122234666666 3467777532211111
Q ss_pred hhhhcccccCCCCcHhHHH--HHHHHHHHcC--CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc
Q 006375 452 QWYENGKFLKKKNTFTDFI--ACAEYLIKNC--YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527 (648)
Q Consensus 452 ~~~~~~~~~~~~~~~~D~~--~~~~~l~~~~--~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~ 527 (648)
+. .....+.+++ ..+-++.++. ..|+++.+|+|.||||+.++.++.++|++|.++++.+|.+=+..
T Consensus 258 el-------~~~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~--- 327 (411)
T PRK10439 258 EL-------PCNADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPH--- 327 (411)
T ss_pred cC-------CchHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCC---
Confidence 10 0011222221 2334444442 35889999999999999999999999999999999998531100
Q ss_pred CCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEe
Q 006375 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKC 607 (648)
Q Consensus 528 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (648)
.. +. ......+.+.+. ....... .++|.+|..|... +...+++.+.|+++|.++. +.+
T Consensus 328 --~~----------~~-~~~~l~~~l~~~----~~~~~~l-r~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~---~~~ 385 (411)
T PRK10439 328 --RG----------GQ-QEGVLLEQLKAG----EVSARGL-RIVLEAGRREPMI-MRANQALYAQLHPAGHSVF---WRQ 385 (411)
T ss_pred --cc----------CC-chhHHHHHHHhc----ccCCCCc-eEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEE---EEE
Confidence 00 00 011111222221 0111122 4999999998643 5678999999999987754 333
Q ss_pred cCCCCcc
Q 006375 608 ELGAGHF 614 (648)
Q Consensus 608 ~~~~gH~ 614 (648)
. .+||.
T Consensus 386 ~-~GGHd 391 (411)
T PRK10439 386 V-DGGHD 391 (411)
T ss_pred C-CCCcC
Confidence 3 45783
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.8e-10 Score=111.17 Aligned_cols=214 Identities=20% Similarity=0.249 Sum_probs=127.0
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 482 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 482 (648)
...|.||++|| ++. ....|......|... |+.|.++|..|+|-.+ +... .......+....+..+......
T Consensus 56 ~~~~pvlllHG-F~~-~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s--~~~~----~~~y~~~~~v~~i~~~~~~~~~ 127 (326)
T KOG1454|consen 56 KDKPPVLLLHG-FGA-SSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSS--PLPR----GPLYTLRELVELIRRFVKEVFV 127 (326)
T ss_pred CCCCcEEEecc-ccC-CcccHhhhccccccccceEEEEEecCCCCcCC--CCCC----CCceehhHHHHHHHHHHHhhcC
Confidence 35688999999 343 334455555555544 6999999999855211 1111 1114556777777766665443
Q ss_pred CCCeEEEEeeChhHHHHHHHHhhCCCceeEEE---ecCCcccccccc-------cC----C---CCCC---Cccc-cc--
Q 006375 483 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAV---AAVPFVDVLTTM-------LD----P---TIPL---TTAE-WE-- 539 (648)
Q Consensus 483 d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v---~~~~~~d~~~~~-------~~----~---~~~~---~~~~-~~-- 539 (648)
.++.++|+|+||+++..+|+.+|+.++.+| +..+........ .+ . ..|. .... |.
T Consensus 128 --~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 205 (326)
T KOG1454|consen 128 --EPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEG 205 (326)
T ss_pred --cceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHh
Confidence 459999999999999999999999999998 444433211110 00 0 0000 0000 00
Q ss_pred -------ccCCC-CCHHHHHH------------------HHc-----CCccccCCCCC-CCeEEEeecCCCCccCCchHH
Q 006375 540 -------EWGDP-WKEEFYFY------------------MKS-----YSPVDNVKAQN-YPHILVTAGLNDPRVMYSEPA 587 (648)
Q Consensus 540 -------~~g~~-~~~~~~~~------------------~~~-----~sp~~~~~~~~-~P~~li~~g~~D~~v~~~~~~ 587 (648)
.+.++ ...+.... +.. ......++++. +| +||++|+.|+.+|.+.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p-vlii~G~~D~~~p~~~~~ 284 (326)
T KOG1454|consen 206 LLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCP-VLIIWGDKDQIVPLELAE 284 (326)
T ss_pred hhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCc-eEEEEcCcCCccCHHHHH
Confidence 00111 01111000 000 12234566664 98 999999999999998777
Q ss_pred HHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 588 KFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 588 ~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
++.+++ -..++.+++ ++||....++++.... .+..|+.++.
T Consensus 285 ~~~~~~----pn~~~~~I~---~~gH~~h~e~Pe~~~~--~i~~Fi~~~~ 325 (326)
T KOG1454|consen 285 ELKKKL----PNAELVEIP---GAGHLPHLERPEEVAA--LLRSFIARLR 325 (326)
T ss_pred HHHhhC----CCceEEEeC---CCCcccccCCHHHHHH--HHHHHHHHhc
Confidence 776666 223455554 8999877777765554 5678887653
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-09 Score=130.65 Aligned_cols=235 Identities=14% Similarity=0.082 Sum_probs=132.1
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhH
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTD 468 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D 468 (648)
+..++.+.... .....|.||++||..+... .|...+..|. .+|.|+++|.||.|.....-............+++
T Consensus 1356 ~~~~i~~~~~G--~~~~~~~vVllHG~~~s~~--~w~~~~~~L~-~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~ 1430 (1655)
T PLN02980 1356 FSCLIKVHEVG--QNAEGSVVLFLHGFLGTGE--DWIPIMKAIS-GSARCISIDLPGHGGSKIQNHAKETQTEPTLSVEL 1430 (1655)
T ss_pred eEEEEEEEecC--CCCCCCeEEEECCCCCCHH--HHHHHHHHHh-CCCEEEEEcCCCCCCCCCccccccccccccCCHHH
Confidence 55554443322 1223579999999665543 3555555554 57999999999988653210000000111235667
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc-------cCCC----C-CCCcc
Q 006375 469 FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-------LDPT----I-PLTTA 536 (648)
Q Consensus 469 ~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~-------~~~~----~-~~~~~ 536 (648)
+.+.+..++++ .+.+++.++|+||||.+++.++.++|++++++|+.++...+.... .... + .....
T Consensus 1431 ~a~~l~~ll~~--l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 1508 (1655)
T PLN02980 1431 VADLLYKLIEH--ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLE 1508 (1655)
T ss_pred HHHHHHHHHHH--hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHH
Confidence 77666655554 234789999999999999999999999999998876532211000 0000 0 00000
Q ss_pred cc-cccCC------C-CCHHH----------------HHHHHcCC------ccccCCCCCCCeEEEeecCCCCccCCchH
Q 006375 537 EW-EEWGD------P-WKEEF----------------YFYMKSYS------PVDNVKAQNYPHILVTAGLNDPRVMYSEP 586 (648)
Q Consensus 537 ~~-~~~g~------~-~~~~~----------------~~~~~~~s------p~~~~~~~~~P~~li~~g~~D~~v~~~~~ 586 (648)
.+ ..|.. . ..+.. ...+.... -...+.++++| +|+++|++|..++ ..+
T Consensus 1509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~P-tLlI~Ge~D~~~~-~~a 1586 (1655)
T PLN02980 1509 IFLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTP-LLLVVGEKDVKFK-QIA 1586 (1655)
T ss_pred HHHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCC-EEEEEECCCCccH-HHH
Confidence 00 00100 0 00100 00111111 11335667888 9999999998764 667
Q ss_pred HHHHHHHHhcCC--------CCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 587 AKFVAKLREMKT--------DDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 587 ~~~~~~l~~~~~--------~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
.++.+.+..... ..++++++ ++||....++++.+.+ .+..||.+.-
T Consensus 1587 ~~~~~~i~~a~~~~~~~~~~~a~lvvI~---~aGH~~~lE~Pe~f~~--~I~~FL~~~~ 1640 (1655)
T PLN02980 1587 QKMYREIGKSKESGNDKGKEIIEIVEIP---NCGHAVHLENPLPVIR--ALRKFLTRLH 1640 (1655)
T ss_pred HHHHHHccccccccccccccceEEEEEC---CCCCchHHHCHHHHHH--HHHHHHHhcc
Confidence 777776654210 13456665 8999876666665444 4567887643
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=113.27 Aligned_cols=225 Identities=15% Similarity=0.172 Sum_probs=128.1
Q ss_pred CCCcEEEEecCCCCCCCC----------CCC-chhH---HHHHHCCCEEEEEccCCCCC--------CChhhhhc--cc-
Q 006375 404 GSDPLLLYGYGSYEICND----------PAF-NSSR---LSLLDRGFIFAIAQIRGGGE--------LGRQWYEN--GK- 458 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~----------~~~-~~~~---~~l~~~G~~v~~~~~rG~g~--------~g~~~~~~--~~- 458 (648)
.+.++||+.|+-.+.+.. ++| ...+ ..+=..-|-|+++|+-|++. .|..-... |.
T Consensus 54 ~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~ 133 (389)
T PRK06765 54 AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKP 133 (389)
T ss_pred CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCc
Confidence 345899999984442211 111 1111 12223569999999998752 22111111 11
Q ss_pred --ccCCCCcHhHHHHHHHHHHHcCCCCCCeEE-EEeeChhHHHHHHHHhhCCCceeEEEecCCcc--ccc------c---
Q 006375 459 --FLKKKNTFTDFIACAEYLIKNCYCTKEKLC-IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV--DVL------T--- 524 (648)
Q Consensus 459 --~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~--d~~------~--- 524 (648)
......+++|+.+++..+++.-.+ .++. ++|+||||.+++.++.++|++++.+|+.+... +.. .
T Consensus 134 ~~~~fP~~t~~d~~~~~~~ll~~lgi--~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~~~~~~~~~~~~~~~ 211 (389)
T PRK06765 134 YGMDFPVVTILDFVRVQKELIKSLGI--ARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQNDAWTSVNVLQNWA 211 (389)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCCCChhHHHHHHHHHH
Confidence 012336789999888888765333 5775 99999999999999999999999988775421 111 0
Q ss_pred --cccCCC----------CCC--------------Ccccc--cccCCC-------------------------------C
Q 006375 525 --TMLDPT----------IPL--------------TTAEW--EEWGDP-------------------------------W 545 (648)
Q Consensus 525 --~~~~~~----------~~~--------------~~~~~--~~~g~~-------------------------------~ 545 (648)
...++. .|. ...+| ..++.. .
T Consensus 212 ~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~~e~yl~~~~~~~~~~~ 291 (389)
T PRK06765 212 EAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTSFEKEINKATYRRAELV 291 (389)
T ss_pred HHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhhHHHHHHHHHHHhhhcc
Confidence 001110 010 00000 011110 0
Q ss_pred CHHHHHH----HHcC-------CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCcc
Q 006375 546 KEEFYFY----MKSY-------SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHF 614 (648)
Q Consensus 546 ~~~~~~~----~~~~-------sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~ 614 (648)
++..+-+ +..+ +....+.++++| +|+++|+.|..+|+.+++++.+.+...+...++++++ ..+||.
T Consensus 292 Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~P-tLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~--s~~GH~ 368 (389)
T PRK06765 292 DANHWLYLAKAVQLFDAGHGFSSLEEALSNIEAN-VLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIE--SINGHM 368 (389)
T ss_pred ChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCC-EEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEEC--CCCCcc
Confidence 0111101 1111 122234567888 9999999999999999999998887655455555554 237997
Q ss_pred CCCchHHHHHHHHHHHHHHHH
Q 006375 615 SKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 615 ~~~~~~~~~~~~~~~~~fl~~ 635 (648)
......+.+.. .+.+||.+
T Consensus 369 ~~le~p~~~~~--~I~~FL~~ 387 (389)
T PRK06765 369 AGVFDIHLFEK--KIYEFLNR 387 (389)
T ss_pred hhhcCHHHHHH--HHHHHHcc
Confidence 66555554444 34677754
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.3e-10 Score=121.80 Aligned_cols=129 Identities=18% Similarity=0.116 Sum_probs=90.9
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHC-C-CEEEEEccC-CCCCCChhhhhcccccCCCCc
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-G-FIFAIAQIR-GGGELGRQWYENGKFLKKKNT 465 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G-~~v~~~~~r-G~g~~g~~~~~~~~~~~~~~~ 465 (648)
+.+.++.|... ...++.|+||++|||.......... ....|+.+ + ++|+.+||| |..|+...-.. ....-..
T Consensus 79 l~l~i~~p~~~-~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~---~~~~n~g 153 (493)
T cd00312 79 LYLNVYTPKNT-KPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDI---ELPGNYG 153 (493)
T ss_pred CeEEEEeCCCC-CCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCC---CCCcchh
Confidence 55666667543 3356789999999986544433332 23455554 3 999999999 66566432211 1122245
Q ss_pred HhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhh--CCCceeEEEecCCcccc
Q 006375 466 FTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPFVDV 522 (648)
Q Consensus 466 ~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~~~a~v~~~~~~d~ 522 (648)
+.|+.+|++|+.++ ...||++|.|+|+|+||.++..++.. .+.+|+++|+.+|....
T Consensus 154 ~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~ 215 (493)
T cd00312 154 LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALS 215 (493)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccC
Confidence 89999999999876 24799999999999999999888876 24589999999886653
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-09 Score=96.04 Aligned_cols=183 Identities=16% Similarity=0.178 Sum_probs=118.6
Q ss_pred EEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCC--CC------hhhhhcccccCCCCcHhHHHHHHHHHHHc
Q 006375 408 LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGE--LG------RQWYENGKFLKKKNTFTDFIACAEYLIKN 479 (648)
Q Consensus 408 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~--~g------~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 479 (648)
+||.+---+|.+... -...+-.++..||.|++||+-.|.- .+ ..|.+ +......+.|+.+.++||..+
T Consensus 41 ~li~i~DvfG~~~~n-~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~---~~~~~~~~~~i~~v~k~lk~~ 116 (242)
T KOG3043|consen 41 VLIVIQDVFGFQFPN-TREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMK---GHSPPKIWKDITAVVKWLKNH 116 (242)
T ss_pred EEEEEEeeeccccHH-HHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHh---cCCcccchhHHHHHHHHHHHc
Confidence 556555444432211 1223456677799999999854411 11 12332 234446789999999999977
Q ss_pred CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCcc
Q 006375 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 559 (648)
Q Consensus 480 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~ 559 (648)
+ ++.+|+++|.++||-++..+.+..| .|.|+|+..|.. .+.+
T Consensus 117 g--~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~------------------------~d~~----------- 158 (242)
T KOG3043|consen 117 G--DSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSF------------------------VDSA----------- 158 (242)
T ss_pred C--CcceeeEEEEeecceEEEEeeccch-hheeeeEecCCc------------------------CChh-----------
Confidence 6 4689999999999998888777776 688888777621 0111
Q ss_pred ccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCC-CCeEEEEecCCCCccCCC-------ch-HHHHHH-HHHH
Q 006375 560 DNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD-DNILLFKCELGAGHFSKS-------GR-FERLRE-AAFT 629 (648)
Q Consensus 560 ~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~gH~~~~-------~~-~~~~~~-~~~~ 629 (648)
.+..+++| +|++.|+.|..||+.....+-+++.....- +++.+| ++.+|+... +. ....++ ..+.
T Consensus 159 -D~~~vk~P-ilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f---~g~~HGf~~~r~~~~~Ped~~~~eea~~~~ 233 (242)
T KOG3043|consen 159 -DIANVKAP-ILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTF---SGVGHGFVARRANISSPEDKKAAEEAYQRF 233 (242)
T ss_pred -HHhcCCCC-EEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEc---CCccchhhhhccCCCChhHHHHHHHHHHHH
Confidence 12344577 999999999999999888888888765432 234444 488886542 11 112222 3456
Q ss_pred HHHHHHhc
Q 006375 630 YTFLMRAL 637 (648)
Q Consensus 630 ~~fl~~~l 637 (648)
..||.+++
T Consensus 234 ~~Wf~~y~ 241 (242)
T KOG3043|consen 234 ISWFKHYL 241 (242)
T ss_pred HHHHHHhh
Confidence 78887765
|
|
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.3e-09 Score=104.03 Aligned_cols=225 Identities=16% Similarity=0.159 Sum_probs=135.0
Q ss_pred CCCCcEEEEecCCCCCCCC-CCCchhHHHHHHCCCEEEEEccC--------------CCC-CCChhhhhcccccCCCCcH
Q 006375 403 DGSDPLLLYGYGSYEICND-PAFNSSRLSLLDRGFIFAIAQIR--------------GGG-ELGRQWYENGKFLKKKNTF 466 (648)
Q Consensus 403 ~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G~~v~~~~~r--------------G~g-~~g~~~~~~~~~~~~~~~~ 466 (648)
+.+.|++++.||--..... ..+..........|++++.+|.. |++ ++=.+|.+...... ...+
T Consensus 51 ~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~-~~q~ 129 (316)
T COG0627 51 GRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASG-PYQW 129 (316)
T ss_pred CCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccC-ccch
Confidence 4567888888884322111 11122222334458888887432 332 33334443321111 2344
Q ss_pred hHHHHH--HHHHHHcCCCCC--CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCC---CCCCCcccc-
Q 006375 467 TDFIAC--AEYLIKNCYCTK--EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP---TIPLTTAEW- 538 (648)
Q Consensus 467 ~D~~~~--~~~l~~~~~~d~--~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~---~~~~~~~~~- 538 (648)
++++.- -..+.+...++. ++.+|+|+||||+-|+.+|+.+|++|+.+.+.+|+++....+... ..++....+
T Consensus 130 ~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~ 209 (316)
T COG0627 130 ETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFN 209 (316)
T ss_pred hHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHH
Confidence 555532 112233344454 389999999999999999999999999999999999977544322 111111111
Q ss_pred cccCCCCCHHHHHHHHcCCccccCCC---C----------CCCeEEEeecCCCCccC--CchHHHHHHHHHhcCCCCCeE
Q 006375 539 EEWGDPWKEEFYFYMKSYSPVDNVKA---Q----------NYPHILVTAGLNDPRVM--YSEPAKFVAKLREMKTDDNIL 603 (648)
Q Consensus 539 ~~~g~~~~~~~~~~~~~~sp~~~~~~---~----------~~P~~li~~g~~D~~v~--~~~~~~~~~~l~~~~~~~~~~ 603 (648)
..||.+.++ .++.++|..++.+ . .-|++++-+|..|.... ...++++.+++++++.+..+.
T Consensus 210 ~~~G~~~~~----~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~ 285 (316)
T COG0627 210 AMLGPDSDP----AWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVR 285 (316)
T ss_pred HhcCCCccc----cccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceee
Confidence 234544332 2356677666654 1 33569999999998764 445889999999999887533
Q ss_pred EEEecCCCCccCCCchHHHHH-HHHHHHHHHHHhcCCC
Q 006375 604 LFKCELGAGHFSKSGRFERLR-EAAFTYTFLMRALSML 640 (648)
Q Consensus 604 ~~~~~~~~gH~~~~~~~~~~~-~~~~~~~fl~~~l~~~ 640 (648)
.. ++..|. ...++ .+.+.+.|+...|++.
T Consensus 286 ~~---~~G~Hs-----w~~w~~~l~~~~~~~a~~l~~~ 315 (316)
T COG0627 286 DQ---PGGDHS-----WYFWASQLADHLPWLAGALGLA 315 (316)
T ss_pred eC---CCCCcC-----HHHHHHHHHHHHHHHHHHhccC
Confidence 33 467773 22233 3557789999998864
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-09 Score=99.50 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=86.9
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhH
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTD 468 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D 468 (648)
.|..+++|++. +.+|+||+.||- ...... |......+++.||+|+.++...-.. .......++
T Consensus 4 ~~l~v~~P~~~----g~yPVv~f~~G~-~~~~s~-Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~~ 66 (259)
T PF12740_consen 4 KPLLVYYPSSA----GTYPVVLFLHGF-LLINSW-YSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVAS 66 (259)
T ss_pred CCeEEEecCCC----CCcCEEEEeCCc-CCCHHH-HHHHHHHHHhCceEEEEecccccCC-----------CCcchhHHH
Confidence 35667888765 789999999994 333222 6677789999999999999553221 111235678
Q ss_pred HHHHHHHHHHc---C-----CCCCCeEEEEeeChhHHHHHHHHhhC-----CCceeEEEecCCcc
Q 006375 469 FIACAEYLIKN---C-----YCTKEKLCIEGRSAGGLLIGAVLNMR-----PDLFKAAVAAVPFV 520 (648)
Q Consensus 469 ~~~~~~~l~~~---~-----~~d~~~i~i~G~S~GG~l~~~~~~~~-----p~~~~a~v~~~~~~ 520 (648)
+.+.++||.+. . ..|-.||+|+|||.||-++.+++.++ +.+|+++|+..|+-
T Consensus 67 ~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 67 AAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred HHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 88899998763 1 25889999999999999999888876 45899999999974
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-06 Score=86.05 Aligned_cols=203 Identities=14% Similarity=0.043 Sum_probs=106.6
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc-C-ccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV-G-VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~-~-~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
....|++||++|.|..+..| ..++|.+||++++.++.+.. + ...+..++|++ .++|.... ..|++++|.+
T Consensus 39 ~~~~ft~dG~kllF~s~~dg--~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-----~~l~~vdL~T 111 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDG--NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-----RSLRRVDLDT 111 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTS--S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-----TEEEEEETTT
T ss_pred cCCCcCCCCCEEEEEeccCC--CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-----CeEEEEECCc
Confidence 35688999999999999887 58999999999999876532 1 22348899999 99887632 4699999999
Q ss_pred CCCCcEEEEeecCCCeEEEEEe--CCCCcEEEEEEcc-------------------ccccEEEEEECCCCCceeEeeecc
Q 006375 161 DQSNDICLYHEKDDIYSLGLQA--SESKKFLFIASES-------------------KITRFVFYLDVSKPEELRVLTPRV 219 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~--s~Dg~~l~~~~~~-------------------~~~~~l~~~dl~~~~~~~~l~~~~ 219 (648)
. +..+||+.++ .|.....| ..|++.++..... ...+.|+.+|+.+++ .+.+....
T Consensus 112 ~--e~~~vy~~p~-~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~-~~~v~~~~ 187 (386)
T PF14583_consen 112 L--EERVVYEVPD-DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE-RKVVFEDT 187 (386)
T ss_dssp ----EEEEEE--T-TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEEEES
T ss_pred C--cEEEEEECCc-ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc-eeEEEecC
Confidence 7 5668887764 34322333 5678876543221 123589999999998 77666544
Q ss_pred cce-eeeEeecCCEEEEEeccCCC--CCcEEEEEeCCCCCcceeEecCCCC--cccceEEEeCCEEEEEEecCCeeEEEE
Q 006375 220 VGV-DTAASHRGNHFFITRRSDEL--FNSELLACPVDNTSETTVLIPHRES--VKLQDIQLFIDHLAVYEREGGLQKITT 294 (648)
Q Consensus 220 ~~~-~~~~s~dg~~l~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~v 294 (648)
... ...+||....++.-...+.. -..+++.++.++. ..+.+..+.+. ..-+.|.+++..+++.....+....++
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence 432 24467755444444443222 2358999998763 23223333222 122345566677766544333333444
Q ss_pred EEcC
Q 006375 295 YRLP 298 (648)
Q Consensus 295 ~~~~ 298 (648)
..++
T Consensus 267 ~~~d 270 (386)
T PF14583_consen 267 AGYD 270 (386)
T ss_dssp EEE-
T ss_pred EeeC
Confidence 4444
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-09 Score=108.87 Aligned_cols=126 Identities=19% Similarity=0.232 Sum_probs=88.5
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCC---CCCCCCCCchhHHHHHHCC-CEEEEEccCCCC-CCChhhhhcc--cccC
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSY---EICNDPAFNSSRLSLLDRG-FIFAIAQIRGGG-ELGRQWYENG--KFLK 461 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~---~~~~~~~~~~~~~~l~~~G-~~v~~~~~rG~g-~~g~~~~~~~--~~~~ 461 (648)
+.+.+..|.. ..++.|++||+|||. |++..+.++ -..|+.+| ++|+.+|||-+- || -++.... ....
T Consensus 80 L~LNIwaP~~---~a~~~PVmV~IHGG~y~~Gs~s~~~yd--gs~La~~g~vVvVSvNYRLG~lGf-L~~~~~~~~~~~~ 153 (491)
T COG2272 80 LYLNIWAPEV---PAEKLPVMVYIHGGGYIMGSGSEPLYD--GSALAARGDVVVVSVNYRLGALGF-LDLSSLDTEDAFA 153 (491)
T ss_pred eeEEeeccCC---CCCCCcEEEEEeccccccCCCcccccC--hHHHHhcCCEEEEEeCccccccee-eehhhcccccccc
Confidence 4455555651 235689999999973 333334344 46788888 999999999543 43 1222221 1111
Q ss_pred CCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhCCC---ceeEEEecCCccc
Q 006375 462 KKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAVPFVD 521 (648)
Q Consensus 462 ~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~~~a~v~~~~~~d 521 (648)
.-..+.|++.|++|+.++ -.-||++|.|+|.|+|++.++.+++. |. +|+.+|+.+|.+-
T Consensus 154 ~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 154 SNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred ccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 115789999999999876 44699999999999999998888884 65 7888898888654
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=113.13 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=66.4
Q ss_pred eCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccC
Q 006375 382 SASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK 461 (648)
Q Consensus 382 ~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 461 (648)
...+|.+|..... + +.+.|+||++||..+... .|......| .+||.|+++|+||.|...... ..
T Consensus 8 ~~~~g~~l~~~~~---g----~~~~~~ivllHG~~~~~~--~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~------~~ 71 (582)
T PRK05855 8 VSSDGVRLAVYEW---G----DPDRPTVVLVHGYPDNHE--VWDGVAPLL-ADRFRVVAYDVRGAGRSSAPK------RT 71 (582)
T ss_pred EeeCCEEEEEEEc---C----CCCCCeEEEEcCCCchHH--HHHHHHHHh-hcceEEEEecCCCCCCCCCCC------cc
Confidence 3457777765421 1 123589999999754432 355555555 679999999999988654221 11
Q ss_pred CCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh
Q 006375 462 KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 462 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 505 (648)
...+++++.+.+..+++.-.. +.++.++|+||||.++..++.+
T Consensus 72 ~~~~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 72 AAYTLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred cccCHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhC
Confidence 123445555555544443111 2349999999999888777665
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=94.00 Aligned_cols=182 Identities=19% Similarity=0.157 Sum_probs=97.8
Q ss_pred EEEEecCCCCCCCCCCCchhHHHHHHCC--CEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 408 LLLYGYGSYEICNDPAFNSSRLSLLDRG--FIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 408 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G--~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|+|+||--.+..+.........+.+.+ ..+..+|.. ...++..+.++.++++. .++
T Consensus 1 ~ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~-------------------~~p~~a~~~l~~~i~~~--~~~ 59 (187)
T PF05728_consen 1 MILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLP-------------------PFPEEAIAQLEQLIEEL--KPE 59 (187)
T ss_pred CeEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCC-------------------cCHHHHHHHHHHHHHhC--CCC
Confidence 4899999332222221222234566655 445566544 22356666777776653 334
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCC--CCHHHHHHHHcCCccccCC
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP--WKEEFYFYMKSYSPVDNVK 563 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~sp~~~~~ 563 (648)
.++++|.|+||+.|..++.+++ +++ |+.+|.+.+...+.. .+. ......++.. ..+.....++++.... +.
T Consensus 60 ~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~-~iG--~~~~~~~~e~~~~~~~~~~~l~~l~~~~-~~ 132 (187)
T PF05728_consen 60 NVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQD-YIG--EQTNPYTGESYELTEEHIEELKALEVPY-PT 132 (187)
T ss_pred CeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHH-hhC--ccccCCCCccceechHhhhhcceEeccc-cC
Confidence 5999999999999999998875 444 888888876654321 110 0000111211 1222222222221111 11
Q ss_pred CCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHH
Q 006375 564 AQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 633 (648)
Q Consensus 564 ~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 633 (648)
... ++++++++.|.++++.++.+.++.. ..++. .+++|.... .+ +.+..+.+|+
T Consensus 133 -~~~-~~lvll~~~DEvLd~~~a~~~~~~~-------~~~i~---~ggdH~f~~--f~--~~l~~i~~f~ 186 (187)
T PF05728_consen 133 -NPE-RYLVLLQTGDEVLDYREAVAKYRGC-------AQIIE---EGGDHSFQD--FE--EYLPQIIAFL 186 (187)
T ss_pred -CCc-cEEEEEecCCcccCHHHHHHHhcCc-------eEEEE---eCCCCCCcc--HH--HHHHHHHHhh
Confidence 123 4999999999999986665555321 12333 378996532 21 1233456776
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-08 Score=105.67 Aligned_cols=108 Identities=16% Similarity=0.051 Sum_probs=72.4
Q ss_pred cEEEEecCCCCCCCCCCC---chhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 407 PLLLYGYGSYEICNDPAF---NSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~---~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
+-||++||......-... ......|+++||.|+++|.||.|...+.+. ......+++.++++++.+. ..
T Consensus 189 ~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~------~ddY~~~~i~~al~~v~~~--~g 260 (532)
T TIGR01838 189 TPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKT------FDDYIRDGVIAALEVVEAI--TG 260 (532)
T ss_pred CcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCC------hhhhHHHHHHHHHHHHHHh--cC
Confidence 457777874332221111 245678899999999999999875433321 1123345688889998864 35
Q ss_pred CCeEEEEeeChhHHHHH----HHHhhC-CCceeEEEecCCcccc
Q 006375 484 KEKLCIEGRSAGGLLIG----AVLNMR-PDLFKAAVAAVPFVDV 522 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~----~~~~~~-p~~~~a~v~~~~~~d~ 522 (648)
.+++.++|+|+||.+++ .++... |++++++++.+..+|.
T Consensus 261 ~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 261 EKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred CCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence 58999999999999852 234444 7788988877776664
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-07 Score=87.86 Aligned_cols=145 Identities=15% Similarity=0.143 Sum_probs=91.8
Q ss_pred eeEEeCCCCCEEEEEEeC----CC---CeEEEEEEEECCCCCeeeccc--cCccceeEEecCC-eEEEEEeCCCCCCceE
Q 006375 84 GCFQVSPDNKLVAYAEDT----KG---DEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKA 153 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~----~G---~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg-~l~y~~~~~~~~~~~l 153 (648)
..+.|+|+|++|++..+. .+ -....|+.++..+.......+ .+....++|+|+| .|+.... ..+.++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g---~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYG---SMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEc---cCCccc
Confidence 367899999999999772 21 114678888777655433322 2335669999999 8776643 223357
Q ss_pred EEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEE
Q 006375 154 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHF 233 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l 233 (648)
.++++... .++.-.. ...-.+.|||+|++|++........+|.++|..+.+ ..............|||||++|
T Consensus 86 ~lyd~~~~-----~i~~~~~-~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-~i~~~~~~~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 86 TLYDVKGK-----KIFSFGT-QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-KISTFEHSDATDVEWSPDGRYL 158 (194)
T ss_pred EEEcCccc-----EeEeecC-CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE-EeeccccCcEEEEEEcCCCCEE
Confidence 77777522 2222222 222357899999999986644444678999998654 2111122222446799999998
Q ss_pred EEEec
Q 006375 234 FITRR 238 (648)
Q Consensus 234 ~~~~~ 238 (648)
+..+.
T Consensus 159 ~ta~t 163 (194)
T PF08662_consen 159 ATATT 163 (194)
T ss_pred EEEEe
Confidence 87665
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.1e-07 Score=91.48 Aligned_cols=243 Identities=11% Similarity=0.181 Sum_probs=161.3
Q ss_pred EeeEEeCCC--CCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEe--CCCCCCceEEEE
Q 006375 83 VGCFQVSPD--NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITM--DEILRPDKAWLH 156 (648)
Q Consensus 83 ~~~~~~SPD--G~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~--~~~~~~~~l~~~ 156 (648)
+.+.-..|| |.+|.|++. -+||..++.+|+.+..+ --++..++.++||| +++|++. .......+||.+
T Consensus 39 M~n~~l~PDI~GD~IiFt~~------DdlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v 112 (668)
T COG4946 39 MKNYYLNPDIYGDRIIFTCC------DDLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVV 112 (668)
T ss_pred hhhhhcCCcccCcEEEEEec------hHHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEE
Confidence 566778898 999999975 36899999999876543 34666779999999 9999764 234456789999
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcccc---ccEEEEEECCCCCceeEeeecccceeeeEeecCCEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI---TRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHF 233 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~---~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l 233 (648)
+...++.+..+-|. ..+.--..|+|||+-|+.+.-... -.++|.+..++.+ ..+|.-+. ....+-.|| .+
T Consensus 113 ~~e~Ge~kRiTyfG---r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~-~e~LnlGp--athiv~~dg-~i 185 (668)
T COG4946 113 PSEDGEAKRITYFG---RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIK-TEPLNLGP--ATHIVIKDG-II 185 (668)
T ss_pred eCCCCcEEEEEEec---cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCce-eeeccCCc--eeeEEEeCC-EE
Confidence 99998665555552 334434579999998876543222 3689999998876 44443221 122244566 45
Q ss_pred EEEecc---------CCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcc
Q 006375 234 FITRRS---------DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPL 304 (648)
Q Consensus 234 ~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~ 304 (648)
++-.|. .+..+++|+.-...+ .....++.-.. .+......++++++....+|...|+-.+++ |..+
T Consensus 186 vigRntydLP~WK~YkGGtrGklWis~d~g-~tFeK~vdl~~--~vS~PmIV~~RvYFlsD~eG~GnlYSvdld--GkDl 260 (668)
T COG4946 186 VIGRNTYDLPHWKGYKGGTRGKLWISSDGG-KTFEKFVDLDG--NVSSPMIVGERVYFLSDHEGVGNLYSVDLD--GKDL 260 (668)
T ss_pred EEccCcccCcccccccCCccceEEEEecCC-cceeeeeecCC--CcCCceEEcceEEEEecccCccceEEeccC--Cchh
Confidence 665553 144567777654332 23333554333 356777889999999999999999988888 5543
Q ss_pred cccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 305 KSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 305 ~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
+ +-..|.+ .-.-+.+-|+.++.|+-. +.+|.||+.+.+.
T Consensus 261 r-----rHTnFtd----YY~R~~nsDGkrIvFq~~-----GdIylydP~td~l 299 (668)
T COG4946 261 R-----RHTNFTD----YYPRNANSDGKRIVFQNA-----GDIYLYDPETDSL 299 (668)
T ss_pred h-----hcCCchh----ccccccCCCCcEEEEecC-----CcEEEeCCCcCcc
Confidence 2 1222321 112344567888877654 5699999998873
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=103.22 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=65.2
Q ss_pred CCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCC------Chhhhhcc-------c----ccCC---
Q 006375 403 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGEL------GRQWYENG-------K----FLKK--- 462 (648)
Q Consensus 403 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~------g~~~~~~~-------~----~~~~--- 462 (648)
.++.|+||+-||-.+... .++..+..||++||+|++++.|.+... ...-.... . ....
T Consensus 97 ~~~~PvvIFSHGlgg~R~--~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T PF03403_consen 97 PGKFPVVIFSHGLGGSRT--SYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDP 174 (379)
T ss_dssp SS-EEEEEEE--TT--TT--TTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----G
T ss_pred CCCCCEEEEeCCCCcchh--hHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccc
Confidence 377999999999665543 378888999999999999999954321 11100000 0 0000
Q ss_pred C-----------CcHhHHHHHHHHHHH--c------------------CCCCCCeEEEEeeChhHHHHHHHHhhCCCcee
Q 006375 463 K-----------NTFTDFIACAEYLIK--N------------------CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 511 (648)
Q Consensus 463 ~-----------~~~~D~~~~~~~l~~--~------------------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~ 511 (648)
. .=..|+..+++.|.+ . +.+|.++|+++|||+||..++.++.+. ..|+
T Consensus 175 ~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~ 253 (379)
T PF03403_consen 175 EEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFK 253 (379)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcc
Confidence 0 012456666666643 1 346789999999999999999888876 5799
Q ss_pred EEEecCCc
Q 006375 512 AAVAAVPF 519 (648)
Q Consensus 512 a~v~~~~~ 519 (648)
|+|+.-|.
T Consensus 254 ~~I~LD~W 261 (379)
T PF03403_consen 254 AGILLDPW 261 (379)
T ss_dssp EEEEES--
T ss_pred eEEEeCCc
Confidence 99987665
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.9e-06 Score=82.96 Aligned_cols=239 Identities=14% Similarity=0.070 Sum_probs=130.8
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 161 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~ 161 (648)
..+.|||||+.++.+.... ..|+++|+++++.+.. ........+.|+||| .++.+.. ....|+.+++.+.
T Consensus 34 ~~l~~~~dg~~l~~~~~~~----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~----~~~~l~~~d~~~~ 105 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDS----DTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANE----DDNLVTVIDIETR 105 (300)
T ss_pred CceEECCCCCEEEEEECCC----CeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcC----CCCeEEEEECCCC
Confidence 4678999999876554332 3799999999886542 111112458899999 5544432 1235888898764
Q ss_pred CCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeE-eeecccceeeeEeecCCEEEEEeccC
Q 006375 162 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV-LTPRVVGVDTAASHRGNHFFITRRSD 240 (648)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~-l~~~~~~~~~~~s~dg~~l~~~~~~~ 240 (648)
+....+... .....+.++|||+++++.... ...++.+|..+++ ... +..........|+++|+.|++.+..+
T Consensus 106 --~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~--~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 106 --KVLAEIPVG--VEPEGMAVSPDGKIVVNTSET--TNMAHFIDTKTYE-IVDNVLVDQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred --eEEeEeeCC--CCcceEEECCCCCEEEEEecC--CCeEEEEeCCCCe-EEEEEEcCCCccEEEECCCCCEEEEEcCCC
Confidence 222222211 122357899999998875442 3456667887765 222 21111222346899999887765432
Q ss_pred CCCCcEEEEEeCCCCCcceeEecCC-----CCcccceEEE--eCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCcee
Q 006375 241 ELFNSELLACPVDNTSETTVLIPHR-----ESVKLQDIQL--FIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 313 (648)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i 313 (648)
..+..+|+++......+.... ......++.+ +++.+++... ...++.++++.. ..+. ..+
T Consensus 179 ----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~--~~~~i~v~d~~~--~~~~-----~~~ 245 (300)
T TIGR03866 179 ----GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG--PANRVAVVDAKT--YEVL-----DYL 245 (300)
T ss_pred ----CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC--CCCeEEEEECCC--CcEE-----EEE
Confidence 367888887632222111111 1111223434 4445444332 234688888763 2211 111
Q ss_pred ecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 314 EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 314 ~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
.... .+..+.+++++..++.. + ..-+.+..+|+.+++
T Consensus 246 ~~~~---~~~~~~~~~~g~~l~~~-~--~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 246 LVGQ---RVWQLAFTPDEKYLLTT-N--GVSNDVSVIDVAALK 282 (300)
T ss_pred EeCC---CcceEEECCCCCEEEEE-c--CCCCeEEEEECCCCc
Confidence 1111 12234456677755432 1 223579999999887
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-07 Score=96.94 Aligned_cols=142 Identities=20% Similarity=0.253 Sum_probs=104.3
Q ss_pred CCCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCC----chhHHHHHHCCCEEEEEccCCC
Q 006375 371 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF----NSSRLSLLDRGFIFAIAQIRGG 446 (648)
Q Consensus 371 ~~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~----~~~~~~l~~~G~~v~~~~~rG~ 446 (648)
...|.+|...+++.||-.+... -.|... +++|+|++.||-..++..+-- ...+-.|+++||.|..-|.||
T Consensus 43 ~~gy~~E~h~V~T~DgYiL~lh-RIp~~~----~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG- 116 (403)
T KOG2624|consen 43 KYGYPVEEHEVTTEDGYILTLH-RIPRGK----KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG- 116 (403)
T ss_pred HcCCceEEEEEEccCCeEEEEe-eecCCC----CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC-
Confidence 3467899999999999844333 334332 789999999996655544322 223457889999999999999
Q ss_pred CCCChhhhhcccc--------cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC---ceeEEEe
Q 006375 447 GELGRQWYENGKF--------LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVA 515 (648)
Q Consensus 447 g~~g~~~~~~~~~--------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~~~a~v~ 515 (648)
..|+++--..... .+.+-...|+.|.++|+.+. +..+++..+|||.|+.....++..+|+ +++.+++
T Consensus 117 n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~a 194 (403)
T KOG2624|consen 117 NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIA 194 (403)
T ss_pred cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchhhhhhheeee
Confidence 6666553322221 11223668999999999875 467999999999999999888888876 6788888
Q ss_pred cCCcc
Q 006375 516 AVPFV 520 (648)
Q Consensus 516 ~~~~~ 520 (648)
.+|++
T Consensus 195 LAP~~ 199 (403)
T KOG2624|consen 195 LAPAA 199 (403)
T ss_pred ecchh
Confidence 88876
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-09 Score=102.98 Aligned_cols=78 Identities=26% Similarity=0.247 Sum_probs=63.5
Q ss_pred CEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEe
Q 006375 436 FIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 515 (648)
Q Consensus 436 ~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~ 515 (648)
|.|+++|.||.|.....| .........+|+.+.++.+++.-.+ +++.++|+||||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHW----DPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSCC----GSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCc----cCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 679999999988654321 1234446779999999999886434 4599999999999999999999999999999
Q ss_pred cCCc
Q 006375 516 AVPF 519 (648)
Q Consensus 516 ~~~~ 519 (648)
.+++
T Consensus 75 ~~~~ 78 (230)
T PF00561_consen 75 ISPP 78 (230)
T ss_dssp ESES
T ss_pred Eeee
Confidence 9885
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.6e-07 Score=86.82 Aligned_cols=205 Identities=19% Similarity=0.110 Sum_probs=122.8
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 455 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 455 (648)
...+.+.+.+|..+..--.|-... ..+.+..+||-+||.||+.. .|......|.+.|..++.+|++|.|-......
T Consensus 6 ~~~~k~~~~~~~~~~~~a~y~D~~-~~gs~~gTVv~~hGsPGSH~--DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~- 81 (297)
T PF06342_consen 6 RKLVKFQAENGKIVTVQAVYEDSL-PSGSPLGTVVAFHGSPGSHN--DFKYIRPPLDEAGIRFIGINYPGFGFTPGYPD- 81 (297)
T ss_pred EEEEEcccccCceEEEEEEEEecC-CCCCCceeEEEecCCCCCcc--chhhhhhHHHHcCeEEEEeCCCCCCCCCCCcc-
Confidence 344556666776666555554443 22334569999999999755 47777889999999999999999774322111
Q ss_pred cccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc-ccc-----------
Q 006375 456 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV-DVL----------- 523 (648)
Q Consensus 456 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~-d~~----------- 523 (648)
. ...-.+-..-++.|.++-.++ +++.++|||.||-.|+.++..+| ..++++.+|+- -+-
T Consensus 82 -----~-~~~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~G~r~HkgIrp~~r~~~ 152 (297)
T PF06342_consen 82 -----Q-QYTNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPPGLRPHKGIRPLSRMET 152 (297)
T ss_pred -----c-ccChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCCccccccCcCHHHHHHH
Confidence 1 112234444455555543344 89999999999999999999886 35666666531 000
Q ss_pred -ccccCCCCCCCccc------ccccCCC--CCHHHHHHHHc---CCc------cccCCCCCCCeEEEeecCCCCccCCch
Q 006375 524 -TTMLDPTIPLTTAE------WEEWGDP--WKEEFYFYMKS---YSP------VDNVKAQNYPHILVTAGLNDPRVMYSE 585 (648)
Q Consensus 524 -~~~~~~~~~~~~~~------~~~~g~~--~~~~~~~~~~~---~sp------~~~~~~~~~P~~li~~g~~D~~v~~~~ 585 (648)
.+..+ .+|..... |...|-- ...++...++. .+- ++.+.+.+.| +|+..|.+|..|..+.
T Consensus 153 i~~l~~-~lp~~~~~~i~~~~y~~iG~KV~~GeeA~na~r~m~~~df~~q~~~I~~ln~~~ik-vli~ygg~DhLIEeeI 230 (297)
T PF06342_consen 153 INYLYD-LLPRFIINAIMYFYYRMIGFKVSDGEEAINAMRSMQNCDFEEQKEYIDKLNKKPIK-VLIAYGGKDHLIEEEI 230 (297)
T ss_pred HHHHHH-HhhHHHHHHHHHHHHHHhCeeecChHHHHHHHHHHHhcCHHHHHHHHHHhccCCCc-EEEEEcCcchhhHHHH
Confidence 00000 01111110 1122322 22333333432 221 2334455677 9999999999998887
Q ss_pred HHHHHHHHHh
Q 006375 586 PAKFVAKLRE 595 (648)
Q Consensus 586 ~~~~~~~l~~ 595 (648)
+.++....+.
T Consensus 231 ~~E~a~~f~~ 240 (297)
T PF06342_consen 231 SFEFAMKFKG 240 (297)
T ss_pred HHHHHHHhCC
Confidence 7777766653
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.8e-07 Score=90.39 Aligned_cols=204 Identities=20% Similarity=0.275 Sum_probs=114.7
Q ss_pred EEEEE-eeCccccCCCCcEEEEecCCC-CCCCCCCCc---hhHHHHHHCCCEEEEEccCCCC--CCChhhhhcccccCCC
Q 006375 391 ICIVY-RKNLVKLDGSDPLLLYGYGSY-EICNDPAFN---SSRLSLLDRGFIFAIAQIRGGG--ELGRQWYENGKFLKKK 463 (648)
Q Consensus 391 ~~l~~-~~~~~~~~~~~P~vl~~hGg~-~~~~~~~~~---~~~~~l~~~G~~v~~~~~rG~g--~~g~~~~~~~~~~~~~ 463 (648)
.|++. |.+. + .+.-|+|+|+|||. .....+..- .....+++ ..++++.||.... +.|..+ .
T Consensus 108 ~Wlvk~P~~~-~-pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~~~~~~y---------P 175 (374)
T PF10340_consen 108 YWLVKAPNRF-K-PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSDEHGHKY---------P 175 (374)
T ss_pred EEEEeCCccc-C-CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccCCCcC---------c
Confidence 46555 4443 2 23459999999963 222222111 11123333 6799999997543 222222 3
Q ss_pred CcHhHHHHHHHHHH-HcCCCCCCeEEEEeeChhHHHHHHHHhhC-----CCceeEEEecCCcccccccccCCCCCCC---
Q 006375 464 NTFTDFIACAEYLI-KNCYCTKEKLCIEGRSAGGLLIGAVLNMR-----PDLFKAAVAAVPFVDVLTTMLDPTIPLT--- 534 (648)
Q Consensus 464 ~~~~D~~~~~~~l~-~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-----p~~~~a~v~~~~~~d~~~~~~~~~~~~~--- 534 (648)
..+.++++..++|+ +.|. ++|.++|.||||.|++.++..- ....+.+|+.+|.+++......+.....
T Consensus 176 tQL~qlv~~Y~~Lv~~~G~---~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~n~ 252 (374)
T PF10340_consen 176 TQLRQLVATYDYLVESEGN---KNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHDNE 252 (374)
T ss_pred hHHHHHHHHHHHHHhccCC---CeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCccccccc
Confidence 45689999999999 5554 7899999999999998776531 1246899999999998732111110000
Q ss_pred ------c---ccc-ccc-CCCCCHHHHHHHHcCCccccCCC-----------CCCCeEEEeecCCCCccCCchHHHHHHH
Q 006375 535 ------T---AEW-EEW-GDPWKEEFYFYMKSYSPVDNVKA-----------QNYPHILVTAGLNDPRVMYSEPAKFVAK 592 (648)
Q Consensus 535 ------~---~~~-~~~-g~~~~~~~~~~~~~~sp~~~~~~-----------~~~P~~li~~g~~D~~v~~~~~~~~~~~ 592 (648)
. ..| ..| |+ .+++.. ....|+-++.. .++ .++|+.|+++-. -.+.++|+++
T Consensus 253 ~~D~l~~~~~~~~~~~y~~~-~~~~~~---~~~~~~~n~~~n~d~~~W~~I~~~~-~vfVi~Ge~Evf--rddI~~~~~~ 325 (374)
T PF10340_consen 253 KRDMLSYKGLSMFGDAYIGN-NDPEND---LNSLPFVNIEYNFDAEDWKDILKKY-SVFVIYGEDEVF--RDDILEWAKK 325 (374)
T ss_pred cccccchhhHHHHHHhhccc-cccccc---cccCCccCcccCCChhHHHHhccCC-cEEEEECCcccc--HHHHHHHHHH
Confidence 0 001 011 11 011000 11112211111 134 499999999854 6689999999
Q ss_pred HHhcCCC--CCeEEEEecCCCCccCC
Q 006375 593 LREMKTD--DNILLFKCELGAGHFSK 616 (648)
Q Consensus 593 l~~~~~~--~~~~~~~~~~~~gH~~~ 616 (648)
+...+.. .+..-+-.+.++.|..+
T Consensus 326 ~~~~~~~~~~~~~nv~~~~~G~Hi~P 351 (374)
T PF10340_consen 326 LNDVKPNKFSNSNNVYIDEGGIHIGP 351 (374)
T ss_pred HhhcCccccCCcceEEEecCCccccc
Confidence 9866533 11112223458889653
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-07 Score=109.38 Aligned_cols=105 Identities=13% Similarity=0.063 Sum_probs=64.8
Q ss_pred CcEEEEecCCCCCCCCCCCch---hHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhH----HHHHHHHHHH
Q 006375 406 DPLLLYGYGSYEICNDPAFNS---SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTD----FIACAEYLIK 478 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D----~~~~~~~l~~ 478 (648)
.|.||++||.......+.... ....|+++||.|+++|+. ..++.- .. ....+.| +.++++.+..
T Consensus 67 ~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~G---~~~~~~---~~---~~~~l~~~i~~l~~~l~~v~~ 137 (994)
T PRK07868 67 GPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDFG---SPDKVE---GG---MERNLADHVVALSEAIDTVKD 137 (994)
T ss_pred CCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcCC---CCChhH---cC---ccCCHHHHHHHHHHHHHHHHH
Confidence 478999999655444333222 256788899999999963 211110 00 0122333 3444444433
Q ss_pred cCCCCCCeEEEEeeChhHHHHHHHHhhC-CCceeEEEecCCcccc
Q 006375 479 NCYCTKEKLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPFVDV 522 (648)
Q Consensus 479 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~~~a~v~~~~~~d~ 522 (648)
.. .+++.++|+||||.++..+++.+ +++++.+|+.+..+|+
T Consensus 138 ~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~ 179 (994)
T PRK07868 138 VT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDT 179 (994)
T ss_pred hh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEeccccc
Confidence 32 25799999999999998777644 5588988876655553
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.7e-08 Score=108.83 Aligned_cols=126 Identities=14% Similarity=0.128 Sum_probs=80.3
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC--CCchhHHHHHHCCCEEEEEccCCCC-CCChhhhhccccc--CCC
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP--AFNSSRLSLLDRGFIFAIAQIRGGG-ELGRQWYENGKFL--KKK 463 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~--~~~~~~~~l~~~G~~v~~~~~rG~g-~~g~~~~~~~~~~--~~~ 463 (648)
+.+.++.|+.. ....++|++|++|||....... ........++.++.+|+.+|||-+- |+ -..+... .+=
T Consensus 109 L~LnI~~P~~~-~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gf----l~~~~~~~~~gN 183 (535)
T PF00135_consen 109 LYLNIYTPSNA-SSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGF----LSLGDLDAPSGN 183 (535)
T ss_dssp -EEEEEEETSS-SSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-----BSSSTTSHBST
T ss_pred HHHhhhhcccc-ccccccceEEEeecccccCCCcccccccccccccCCCEEEEEeccccccccc----ccccccccCchh
Confidence 66677778775 4444799999999974433332 1222234567789999999999532 21 1000001 112
Q ss_pred CcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhC--CCceeEEEecCCc
Q 006375 464 NTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPF 519 (648)
Q Consensus 464 ~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~~~a~v~~~~~ 519 (648)
..+.|.+.|++|++++ -.-||++|.|+|+|+||..+..++... ..+|+.+|+.+|.
T Consensus 184 ~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 184 YGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 3689999999999876 346999999999999999888777652 2489999999984
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.5e-08 Score=95.16 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=77.7
Q ss_pred CCCcEEEEecCCCCCCCCCCCch-hHHHHHH-CCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNS-SRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 481 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~-~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 481 (648)
...|++|++||..+.. ...|.. ....|+. .++.|+++|+++.+... +..+.. .-...-+++...+++|.+...
T Consensus 34 ~~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~--y~~a~~--~~~~v~~~la~~l~~L~~~~g 108 (275)
T cd00707 34 PSRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANPN--YPQAVN--NTRVVGAELAKFLDFLVDNTG 108 (275)
T ss_pred CCCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECccccccC--hHHHHH--hHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999954443 222332 2334554 58999999999864322 111100 001123577788888887755
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
.+.++|.++|+|+||.+++.++.+.|++++.+++..|..
T Consensus 109 ~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 109 LSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred CChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 678899999999999999999999999999999887754
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.6e-06 Score=81.92 Aligned_cols=242 Identities=14% Similarity=0.112 Sum_probs=133.6
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC---ccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
+--.++||+|||||-++... ..-||.+..++.-.+..+..+ ....+.||||+ +++-...++ .++++++
T Consensus 227 VWfl~FS~nGkyLAsaSkD~---Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e-----~~~lwDv 298 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKDS---TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE-----VLSLWDV 298 (519)
T ss_pred EEEEEEcCCCeeEeeccCCc---eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH-----heeeccC
Confidence 45678999999999776533 235566655554222223332 23458999999 765544332 2888898
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC--ceeEeeecccceeeeEeecCCEEEEE
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVGVDTAASHRGNHFFIT 236 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~--~~~~l~~~~~~~~~~~s~dg~~l~~~ 236 (648)
.++ +-...|.....--..+..|-|||..++..+.+ ..++.+|+++.. .++-+.. ..-.+..+++||++++.+
T Consensus 299 ~tg--d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d---r~i~~wdlDgn~~~~W~gvr~-~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 299 DTG--DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD---RTIIMWDLDGNILGNWEGVRD-PKVHDLAITYDGKYVLLV 372 (519)
T ss_pred Ccc--hhhhhcccCcCCCcceeEEccCCceeEecCCC---CcEEEecCCcchhhccccccc-ceeEEEEEcCCCcEEEEE
Confidence 887 34455544312223367899999997754433 678999998865 1221110 112345688999999888
Q ss_pred eccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecC
Q 006375 237 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFI 316 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~ 316 (648)
..+ .++..++.... ..+-++.+.. .+.++...++.-++..+-. ...+.+|++.. ...++.... +.
T Consensus 373 ~~d-----~~i~l~~~e~~-~dr~lise~~--~its~~iS~d~k~~LvnL~-~qei~LWDl~e-~~lv~kY~G-hk---- 437 (519)
T KOG0293|consen 373 TVD-----KKIRLYNREAR-VDRGLISEEQ--PITSFSISKDGKLALVNLQ-DQEIHLWDLEE-NKLVRKYFG-HK---- 437 (519)
T ss_pred ecc-----cceeeechhhh-hhhccccccC--ceeEEEEcCCCcEEEEEcc-cCeeEEeecch-hhHHHHhhc-cc----
Confidence 754 35666666541 1221444332 3677888876443333321 23577778762 111111100 00
Q ss_pred CCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 317 DPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 317 ~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
...+.|.+- +....+.++. |-..-+.+|.++..+|+.
T Consensus 438 q~~fiIrSC-Fgg~~~~fia---SGSED~kvyIWhr~sgkl 474 (519)
T KOG0293|consen 438 QGHFIIRSC-FGGGNDKFIA---SGSEDSKVYIWHRISGKL 474 (519)
T ss_pred ccceEEEec-cCCCCcceEE---ecCCCceEEEEEccCCce
Confidence 112233210 1111222322 334557899999999983
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-05 Score=78.33 Aligned_cols=249 Identities=12% Similarity=0.080 Sum_probs=143.6
Q ss_pred CCCCeEeCCEEEEEEecCCceEEEEEEEecCCCC--CCCCccccCCCCCCCCCceEE---------EecccccCCCCcEE
Q 006375 14 VSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNE--APPSVHDTMETGPDAPPEHLI---------LDENVKAEGRGFYS 82 (648)
Q Consensus 14 ~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~l---------ld~n~~~~~~~~~~ 82 (648)
.|.|...|++.||.-.-.|-. .+|.....+.. ++-.+.++.......++.+++ +||.+..-. ...
T Consensus 228 vS~PmIV~~RvYFlsD~eG~G--nlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~le--kld 303 (668)
T COG4946 228 VSSPMIVGERVYFLSDHEGVG--NLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLE--KLD 303 (668)
T ss_pred cCCceEEcceEEEEecccCcc--ceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcce--eee
Confidence 788999999999887765533 24444332211 122233333332223333433 455443211 111
Q ss_pred EeeE--------E----------eCC-CCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEE
Q 006375 83 VGCF--------Q----------VSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYI 142 (648)
Q Consensus 83 ~~~~--------~----------~SP-DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~ 142 (648)
++-+ . +|+ +|.++|+.+. | +.+|++...|-..+..-++-..-...+-|+ .++..
T Consensus 304 I~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR--G----kaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vig 377 (668)
T COG4946 304 IGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR--G----KAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIG 377 (668)
T ss_pred cCCccccccccccccCHHHhhhhhccCCCcEEEEEec--C----cEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEe
Confidence 1100 0 222 6778887764 3 678888877766554322222124445555 55443
Q ss_pred EeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-
Q 006375 143 TMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG- 221 (648)
Q Consensus 143 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~- 221 (648)
..+ ...|-.++.+++ +.+ .+++ +-.-...+..|+||+++++. + ...+||++|++++. .+.+-..+.+
T Consensus 378 t~d----gD~l~iyd~~~~--e~k-r~e~-~lg~I~av~vs~dGK~~vva-N--dr~el~vididngn-v~~idkS~~~l 445 (668)
T COG4946 378 TND----GDKLGIYDKDGG--EVK-RIEK-DLGNIEAVKVSPDGKKVVVA-N--DRFELWVIDIDNGN-VRLIDKSEYGL 445 (668)
T ss_pred ccC----CceEEEEecCCc--eEE-EeeC-CccceEEEEEcCCCcEEEEE-c--CceEEEEEEecCCC-eeEecccccce
Confidence 322 234667777776 222 2322 22334467889999999864 3 34789999999998 7777666555
Q ss_pred -eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEec
Q 006375 222 -VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYERE 286 (648)
Q Consensus 222 -~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (648)
.++.|+|+++||++.-.. +.-...|-.+|..+..... ++++.......+|.++++++++.+.+
T Consensus 446 Itdf~~~~nsr~iAYafP~-gy~tq~Iklydm~~~Kiy~-vTT~ta~DfsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 446 ITDFDWHPNSRWIAYAFPE-GYYTQSIKLYDMDGGKIYD-VTTPTAYDFSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred eEEEEEcCCceeEEEecCc-ceeeeeEEEEecCCCeEEE-ecCCcccccCcccCCCCcEEEEEecc
Confidence 346699999999988764 4555677777877633232 44444444567788888888777665
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-07 Score=83.52 Aligned_cols=224 Identities=18% Similarity=0.111 Sum_probs=125.9
Q ss_pred EEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhccc
Q 006375 379 KWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGK 458 (648)
Q Consensus 379 ~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 458 (648)
..++..||..+++. .+|.+. +.+-.+++-|+++...- .+...+...+.+||.|+..||||.|+.-..=...-.
T Consensus 8 ~~l~~~DG~~l~~~-~~pA~~-----~~~g~~~va~a~Gv~~~-fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~ 80 (281)
T COG4757 8 AHLPAPDGYSLPGQ-RFPADG-----KASGRLVVAGATGVGQY-FYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQ 80 (281)
T ss_pred cccccCCCccCccc-cccCCC-----CCCCcEEecccCCcchh-HhHHHHHHhhccCceEEEEecccccCCCccccccCc
Confidence 56778899999988 555543 44545566676665432 244455667778999999999998875322110000
Q ss_pred ccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc-----------
Q 006375 459 FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML----------- 527 (648)
Q Consensus 459 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~----------- 527 (648)
-.-......|+.++++++.+.- -...+..+|||+||.+.+.+.+ +|..-.++|..++.. +...|.
T Consensus 81 ~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~-~~k~~a~~vfG~gag-wsg~m~~~~~l~~~~l~ 156 (281)
T COG4757 81 WRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQ-HPKYAAFAVFGSGAG-WSGWMGLRERLGAVLLW 156 (281)
T ss_pred cchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccccc-CcccceeeEeccccc-cccchhhhhcccceeec
Confidence 0112245689999999998742 2357999999999987665555 563222333332211 111110
Q ss_pred CCCCC---CCccc--ccccCCCCC-H-HHHHHHHcCC---------cc-----ccCCCCCCCeEEEeecCCCCccCCchH
Q 006375 528 DPTIP---LTTAE--WEEWGDPWK-E-EFYFYMKSYS---------PV-----DNVKAQNYPHILVTAGLNDPRVMYSEP 586 (648)
Q Consensus 528 ~~~~~---~~~~~--~~~~g~~~~-~-~~~~~~~~~s---------p~-----~~~~~~~~P~~li~~g~~D~~v~~~~~ 586 (648)
.--.| ..... +...|..++ + ..++.++.++ |. +-.++..+| +..+...+|+-+|+...
T Consensus 157 ~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtP-i~~~~~~DD~w~P~As~ 235 (281)
T COG4757 157 NLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTP-ITFSRALDDPWAPPASR 235 (281)
T ss_pred cccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCc-eeeeccCCCCcCCHHHH
Confidence 00000 00011 112232211 1 1122222211 11 112344788 99999999999999988
Q ss_pred HHHHHHHHhcCCCCCeEEEEecCC-CCccCC
Q 006375 587 AKFVAKLREMKTDDNILLFKCELG-AGHFSK 616 (648)
Q Consensus 587 ~~~~~~l~~~~~~~~~~~~~~~~~-~gH~~~ 616 (648)
.+|..-.+++. -++..++..++ .||+..
T Consensus 236 d~f~~~y~nAp--l~~~~~~~~~~~lGH~gy 264 (281)
T COG4757 236 DAFASFYRNAP--LEMRDLPRAEGPLGHMGY 264 (281)
T ss_pred HHHHHhhhcCc--ccceecCcccCcccchhh
Confidence 88888877654 34455553322 589653
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-06 Score=71.87 Aligned_cols=162 Identities=20% Similarity=0.268 Sum_probs=95.7
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCC--CCChhhhhcccccCCCCc-HhHHHHHHHHHHHcCCCC
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGG--ELGRQWYENGKFLKKKNT-FTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g--~~g~~~~~~~~~~~~~~~-~~D~~~~~~~l~~~~~~d 483 (648)
-+||+.||...+..++.....+..|+.+|+.|+.+++..-- -+|+. +......+ -...+.++..|.+. .+
T Consensus 15 ~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~r-----kPp~~~~t~~~~~~~~~aql~~~--l~ 87 (213)
T COG3571 15 VTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRR-----KPPPGSGTLNPEYIVAIAQLRAG--LA 87 (213)
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCC-----CCcCccccCCHHHHHHHHHHHhc--cc
Confidence 36888999766666666666677899999999999874211 01100 00111122 24455666666654 34
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEec-CCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccC
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA-VPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV 562 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~-~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~ 562 (648)
..++++-|.||||-++..++..--..+.+.+|. +||. . -|.|+... ..++
T Consensus 88 ~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfh--------------p-----pGKPe~~R----------t~HL 138 (213)
T COG3571 88 EGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFH--------------P-----PGKPEQLR----------TEHL 138 (213)
T ss_pred CCceeeccccccchHHHHHHHhhcCCcceEEEecCccC--------------C-----CCCcccch----------hhhc
Confidence 578999999999998877765422224454443 2221 0 03333221 1346
Q ss_pred CCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCc
Q 006375 563 KAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGH 613 (648)
Q Consensus 563 ~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH 613 (648)
..+++| +||+||+.|+.=.-.+...+ ....+.+++++. ++.|
T Consensus 139 ~gl~tP-tli~qGtrD~fGtr~~Va~y-----~ls~~iev~wl~---~adH 180 (213)
T COG3571 139 TGLKTP-TLITQGTRDEFGTRDEVAGY-----ALSDPIEVVWLE---DADH 180 (213)
T ss_pred cCCCCC-eEEeecccccccCHHHHHhh-----hcCCceEEEEec---cCcc
Confidence 667888 99999999987544333211 123355666665 7788
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.3e-07 Score=82.18 Aligned_cols=110 Identities=23% Similarity=0.372 Sum_probs=69.7
Q ss_pred CCeEEEEeeChhHHHHHHHH-hhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccC
Q 006375 484 KEKLCIEGRSAGGLLIGAVL-NMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNV 562 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~-~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~ 562 (648)
.+.+.++|||.|+.+++.++ .+....++++++.+|+..-.... ..+ .. ..+.+...
T Consensus 54 ~~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~---~~~----~~---------------~~f~~~p~- 110 (171)
T PF06821_consen 54 DEPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPEP---FPP----EL---------------DGFTPLPR- 110 (171)
T ss_dssp TTTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHHC---CTC----GG---------------CCCTTSHC-
T ss_pred CCCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccccc---hhh----hc---------------cccccCcc-
Confidence 35699999999999999988 76778999999999984210110 110 00 11122211
Q ss_pred CCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHH
Q 006375 563 KAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLRE 625 (648)
Q Consensus 563 ~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~ 625 (648)
....+| .+++.+++|+.||+..+.+++++|.. +++.++ ++||+........+.+
T Consensus 111 ~~l~~~-~~viaS~nDp~vp~~~a~~~A~~l~a-----~~~~~~---~~GHf~~~~G~~~~p~ 164 (171)
T PF06821_consen 111 DPLPFP-SIVIASDNDPYVPFERAQRLAQRLGA-----ELIILG---GGGHFNAASGFGPWPE 164 (171)
T ss_dssp CHHHCC-EEEEEETTBSSS-HHHHHHHHHHHT------EEEEET---S-TTSSGGGTHSS-HH
T ss_pred cccCCC-eEEEEcCCCCccCHHHHHHHHHHcCC-----CeEECC---CCCCcccccCCCchHH
Confidence 122455 58899999999999999999999864 345554 8999876554444443
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-07 Score=90.34 Aligned_cols=198 Identities=17% Similarity=0.148 Sum_probs=80.1
Q ss_pred CCcEEEEecCCCCCCC-CCCCchhHHHHHHCCCEEEEEccCC-CCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcC--
Q 006375 405 SDPLLLYGYGSYEICN-DPAFNSSRLSLLDRGFIFAIAQIRG-GGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC-- 480 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG-~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-- 480 (648)
+..+||++-|-...-. .+.....+..|...||.|+.+..+- -+|+|..-.+ ++.+|+.+|++||+...
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~--------~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLD--------RDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HH--------HHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchhh--------hHHHHHHHHHHHHHHhhcc
Confidence 3458888876322222 2333344456655799999999885 3355543222 56799999999999873
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHhhCC-----CceeEEEecCCcccccccccC------------------------CCC
Q 006375 481 YCTKEKLCIEGRSAGGLLIGAVLNMRP-----DLFKAAVAAVPFVDVLTTMLD------------------------PTI 531 (648)
Q Consensus 481 ~~d~~~i~i~G~S~GG~l~~~~~~~~p-----~~~~a~v~~~~~~d~~~~~~~------------------------~~~ 531 (648)
....++|+++|||=|+--++.++.... ..+.++|+++|+.|--..... +.+
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 236789999999999998888877642 469999999999984321110 000
Q ss_pred CCCcccccccCCCCCHHHHHHHHcCCcc----------------ccCCCCCCCeEEEeecCCCCccCCch-HHHHHHHHH
Q 006375 532 PLTTAEWEEWGDPWKEEFYFYMKSYSPV----------------DNVKAQNYPHILVTAGLNDPRVMYSE-PAKFVAKLR 594 (648)
Q Consensus 532 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~----------------~~~~~~~~P~~li~~g~~D~~v~~~~-~~~~~~~l~ 594 (648)
|........|+.|-.+ ++++.-.+|. ....+++.| +|++.+.+|..||.+. -+++.++++
T Consensus 184 p~~~~~~~~~~~PiTA--~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~p-lLvl~Sg~DEyvP~~vdk~~Ll~rw~ 260 (303)
T PF08538_consen 184 PREFTPLVFYDTPITA--YRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKP-LLVLYSGKDEYVPPWVDKEALLERWK 260 (303)
T ss_dssp ----GGTTT-SS---H--HHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S--EEEEEE--TT----------------
T ss_pred eccccccccCCCcccH--HHHHhccCCCCcccccCCCCCHHHHHHHhccCCCc-eEEEecCCCceecccccccccccccc
Confidence 0000000000122111 1122111221 234455667 9999999999999753 456677777
Q ss_pred hcCCC----CCeEEEEecCCCCccCC
Q 006375 595 EMKTD----DNILLFKCELGAGHFSK 616 (648)
Q Consensus 595 ~~~~~----~~~~~~~~~~~~gH~~~ 616 (648)
.+-.+ ..--+++ |+.|...
T Consensus 261 ~a~~~~~~s~~S~iI~---GA~H~~~ 283 (303)
T PF08538_consen 261 AATNPKIWSPLSGIIP---GASHNVS 283 (303)
T ss_dssp --------------------------
T ss_pred cccccccccccccccc---ccccccc
Confidence 65332 1123455 8899654
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-06 Score=92.02 Aligned_cols=159 Identities=11% Similarity=0.028 Sum_probs=101.0
Q ss_pred EEeeEEeCCCCCEEEEEEeC---CCCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCC-------CCCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDT---KGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDE-------ILRP 150 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~---~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~-------~~~~ 150 (648)
.+.++.+||||+++||.... .++...+||+.+..+ +..+.+.......+.|+||| +|+|..... ....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 56799999999999999742 122367999999743 33433222235679999998 898876421 1123
Q ss_pred ceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEE---EECCCCC----ceeEeeecccc--
Q 006375 151 DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFY---LDVSKPE----ELRVLTPRVVG-- 221 (648)
Q Consensus 151 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~---~dl~~~~----~~~~l~~~~~~-- 221 (648)
.++|.+.++++... . . .+ .-...+.|||||++|++... .+||+ ...++++ .++.+.....+
T Consensus 430 gql~~~~vd~ge~~--~--~-~~-g~Issl~wSpDG~RiA~i~~----g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 430 GQLARTPVDASAVA--S--R-VP-GPISELQLSRDGVRAAMIIG----GKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred ceEEEEeccCchhh--h--c-cC-CCcCeEEECCCCCEEEEEEC----CEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 46777777665321 1 1 11 12346789999999999773 37887 6655554 12234443333
Q ss_pred eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCC
Q 006375 222 VDTAASHRGNHFFITRRSDELFNSELLACPVDNT 255 (648)
Q Consensus 222 ~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~ 255 (648)
....|..++. |+..+.. .+..++.+++++.
T Consensus 500 ~~l~W~~~~~-L~V~~~~---~~~~v~~v~vDG~ 529 (591)
T PRK13616 500 VSLDWRTGDS-LVVGRSD---PEHPVWYVNLDGS 529 (591)
T ss_pred ccceEecCCE-EEEEecC---CCCceEEEecCCc
Confidence 3345888776 6655442 3456888888863
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.2e-05 Score=72.68 Aligned_cols=262 Identities=15% Similarity=0.156 Sum_probs=138.8
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCC-eEEEEEEEECCCCCeeec---cccCcc-ceeEEecCCeEEEEEeCCCCCCceEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGD-EIYTVYVIDIETGTPVGK---PLVGVT-ASVEWAGNEALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~-e~~~l~v~dl~~g~~~~~---~~~~~~-~~~~WspDg~l~y~~~~~~~~~~~l~~~ 156 (648)
...-+.|+|++|+| |+....|. ....-|-+|-++|+.... .+.+.. ..++.++||+++|+..=.. ..|-..
T Consensus 41 nptyl~~~~~~~~L-Y~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~---g~v~v~ 116 (346)
T COG2706 41 NPTYLAVNPDQRHL-YVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS---GSVSVY 116 (346)
T ss_pred CCceEEECCCCCEE-EEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC---ceEEEE
Confidence 34567899999876 44433322 134445556655765421 233321 3488899995555543111 224444
Q ss_pred ECCCCCCCcEE---EE-eec------CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeE-----eeecccc
Q 006375 157 KLEADQSNDIC---LY-HEK------DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV-----LTPRVVG 221 (648)
Q Consensus 157 ~l~~~~~~~~~---~~-~~~------~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~-----l~~~~~~ 221 (648)
.+.....-... +. .+. .....-...++||+++|+.. +-+..+|++++++.+. ++. +.++.+-
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~--DLG~Dri~~y~~~dg~-L~~~~~~~v~~G~GP 193 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP--DLGTDRIFLYDLDDGK-LTPADPAEVKPGAGP 193 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe--ecCCceEEEEEcccCc-cccccccccCCCCCc
Confidence 44332111111 11 111 00112235689999999864 3355678888888776 222 2222222
Q ss_pred eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee-----EecCCC--CcccceEEEeCCEEEEEEecCCeeEEEE
Q 006375 222 VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-----LIPHRE--SVKLQDIQLFIDHLAVYEREGGLQKITT 294 (648)
Q Consensus 222 ~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~v 294 (648)
....|.|+|+..|.+.... ....++.++-.. ++.+. .+|.+. .....++.+..|+.+++..+.+...|.+
T Consensus 194 RHi~FHpn~k~aY~v~EL~--stV~v~~y~~~~-g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELN--STVDVLEYNPAV-GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred ceEEEcCCCcEEEEEeccC--CEEEEEEEcCCC-ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 3355889998877776652 223444444332 22221 333332 2234456777777777777778889999
Q ss_pred EEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEEE
Q 006375 295 YRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 359 (648)
Q Consensus 295 ~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~ 359 (648)
+.++..++.+.-+ .... ..+..=..++.++.++-|++.-....+ -.+|+.|.++|++.+
T Consensus 271 f~V~~~~g~L~~~---~~~~--teg~~PR~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~~ 329 (346)
T COG2706 271 FSVDPDGGKLELV---GITP--TEGQFPRDFNINPSGRFLIAANQKSDN-ITVFERDKETGRLTL 329 (346)
T ss_pred EEEcCCCCEEEEE---EEec--cCCcCCccceeCCCCCEEEEEccCCCc-EEEEEEcCCCceEEe
Confidence 9998766643211 0000 000001135556666655544444333 679999999998443
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.3e-07 Score=84.19 Aligned_cols=115 Identities=18% Similarity=0.224 Sum_probs=73.8
Q ss_pred cCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCC--------------CChhhhhcccc--cCC---
Q 006375 402 LDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGE--------------LGRQWYENGKF--LKK--- 462 (648)
Q Consensus 402 ~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~--------------~g~~~~~~~~~--~~~--- 462 (648)
+++|+|+||+-||-.++.. -|+.....||++||+|+++..|-..- +-.+|..--.- ..+
T Consensus 114 k~~k~PvvvFSHGLggsRt--~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLGGSRT--LYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCCccEEEEecccccchh--hHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 3678999999999544432 36777789999999999999986432 11122211000 001
Q ss_pred ---CC---cHhHHHHHHHHHHH---------------------cCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEe
Q 006375 463 ---KN---TFTDFIACAEYLIK---------------------NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 515 (648)
Q Consensus 463 ---~~---~~~D~~~~~~~l~~---------------------~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~ 515 (648)
+. -.+++..|++-|.+ ++.+|..+++|+|||.||..+++....+. .|+|+|+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t-~FrcaI~ 270 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHT-DFRCAIA 270 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhcccc-ceeeeee
Confidence 01 12334444443332 23477899999999999998888877654 5999998
Q ss_pred cCCc
Q 006375 516 AVPF 519 (648)
Q Consensus 516 ~~~~ 519 (648)
.-++
T Consensus 271 lD~W 274 (399)
T KOG3847|consen 271 LDAW 274 (399)
T ss_pred eeee
Confidence 7543
|
|
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.7e-07 Score=85.64 Aligned_cols=116 Identities=19% Similarity=0.165 Sum_probs=79.2
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHC-CCEEEEEccCCCCCCChhhh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWY 454 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~ 454 (648)
.+.+.++..++ ++-.++..|.. ..-|++++.|||..+. .+|...+..+..+ -..++++|.||+|+.--+-.
T Consensus 50 kedv~i~~~~~-t~n~Y~t~~~~-----t~gpil~l~HG~G~S~--LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e 121 (343)
T KOG2564|consen 50 KEDVSIDGSDL-TFNVYLTLPSA-----TEGPILLLLHGGGSSA--LSFAIFASELKSKIRCRCLALDLRGHGETKVENE 121 (343)
T ss_pred ccccccCCCcc-eEEEEEecCCC-----CCccEEEEeecCcccc--hhHHHHHHHHHhhcceeEEEeeccccCccccCCh
Confidence 35566665555 35555444432 3469999999965443 3467767776665 56779999999997532221
Q ss_pred hcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh
Q 006375 455 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 455 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 505 (648)
. ....+....|+.+.++++... .+.+|.++||||||.++...+..
T Consensus 122 ~---dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 122 D---DLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred h---hcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhh
Confidence 1 133445678999999888753 35689999999999999776665
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.8e-06 Score=82.48 Aligned_cols=195 Identities=12% Similarity=0.122 Sum_probs=111.3
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec---cccCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~---~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
..+..+.||||.++|.-- |.+. .+++||+.+|..+.. .......+.+|-||| +++- +.+ ...++.+
T Consensus 270 ~~V~yi~wSPDdryLlaC----g~~e-~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~-Gs~----dr~i~~w 339 (519)
T KOG0293|consen 270 QPVSYIMWSPDDRYLLAC----GFDE-VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT-GSP----DRTIIMW 339 (519)
T ss_pred CceEEEEECCCCCeEEec----CchH-heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe-cCC----CCcEEEe
Confidence 467789999999987522 2212 389999999987643 222235669999999 7644 332 2457888
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFIT 236 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~ 236 (648)
++++.. .--.+.....-..+++.++||++++... ...+|.+++.++......+.....-....+|.||+.+ +
T Consensus 340 dlDgn~---~~~W~gvr~~~v~dlait~Dgk~vl~v~---~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~--L 411 (519)
T KOG0293|consen 340 DLDGNI---LGNWEGVRDPKVHDLAITYDGKYVLLVT---VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLA--L 411 (519)
T ss_pred cCCcch---hhcccccccceeEEEEEcCCCcEEEEEe---cccceeeechhhhhhhccccccCceeEEEEcCCCcEE--E
Confidence 887652 1111111112345788999999998765 3467888888776522234333333456688888743 3
Q ss_pred eccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcC
Q 006375 237 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~ 298 (648)
.|.. +..+...|++.....+....+.....+-.-.+.+ +..+....++ +++++|+..
T Consensus 412 vnL~---~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED--~kvyIWhr~ 470 (519)
T KOG0293|consen 412 VNLQ---DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED--SKVYIWHRI 470 (519)
T ss_pred EEcc---cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCC--ceEEEEEcc
Confidence 3431 2457777776422111122222222222222222 2445555554 478888876
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.3e-05 Score=75.91 Aligned_cols=193 Identities=15% Similarity=0.150 Sum_probs=107.9
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 161 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~ 161 (648)
..+.++|||+.++.+.... ..|+++|+.+++.+.. ........++|+||| .+++...+ ...++.++..+.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~----~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~----~~~~~~~d~~~~ 147 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDD----NLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSET----TNMAHFIDTKTY 147 (300)
T ss_pred cEEEECCCCCEEEEEcCCC----CeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecC----CCeEEEEeCCCC
Confidence 4578999999886654322 3799999998765432 112223458999999 65554322 123555676554
Q ss_pred CCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-----c---eeeeEeecCCEE
Q 006375 162 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-----G---VDTAASHRGNHF 233 (648)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-----~---~~~~~s~dg~~l 233 (648)
. ......... ....+.+++||++|++.+. ....|+++|+++++....+..... . ....++|+|+.+
T Consensus 148 ~--~~~~~~~~~--~~~~~~~s~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 148 E--IVDNVLVDQ--RPRFAEFTADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred e--EEEEEEcCC--CccEEEECCCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 1 111111111 1124678999999877533 235799999988762222221111 1 124579999987
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEE--eCCEEEEEEecCCeeEEEEEEcCC
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL--FIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
++.... +.++.++|+++..... .+.... .+..+.+ +++.++..... ...+.++++..
T Consensus 222 ~~~~~~----~~~i~v~d~~~~~~~~-~~~~~~--~~~~~~~~~~g~~l~~~~~~--~~~i~v~d~~~ 280 (300)
T TIGR03866 222 FVALGP----ANRVAVVDAKTYEVLD-YLLVGQ--RVWQLAFTPDEKYLLTTNGV--SNDVSVIDVAA 280 (300)
T ss_pred EEEcCC----CCeEEEEECCCCcEEE-EEEeCC--CcceEEECCCCCEEEEEcCC--CCeEEEEECCC
Confidence 665432 2368888886532222 222222 2334444 44555443322 34688888873
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.1e-07 Score=89.45 Aligned_cols=131 Identities=16% Similarity=0.063 Sum_probs=91.4
Q ss_pred eEEEEEeCCC-CeEEeEEEEEeeCccc--cCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChh
Q 006375 376 TERKWASASD-GTQIPICIVYRKNLVK--LDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 376 ~~~~~~~s~~-g~~i~~~l~~~~~~~~--~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 452 (648)
...+++.... +.+++.++.+|..... ...+.|+|++-||.... ..+|...+..|++.||+|+.++..|+..-+.+
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~ 115 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFAWLAEHLASYGFVVAAPDHPGSNAGGAP 115 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCCC--ccchhhhHHHHhhCceEEEeccCCCcccccCC
Confidence 3444554433 5578888777766410 11478999999994332 45688888999999999999999997654444
Q ss_pred hhhccccc----CCCCcHhHHHHHHHHHHHc-------CCCCCCeEEEEeeChhHHHHHHHHhhCCC
Q 006375 453 WYENGKFL----KKKNTFTDFIACAEYLIKN-------CYCTKEKLCIEGRSAGGLLIGAVLNMRPD 508 (648)
Q Consensus 453 ~~~~~~~~----~~~~~~~D~~~~~~~l~~~-------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~ 508 (648)
=+.++... ....-..|+...+.+|.+. +.+|+.+|++.|+|+||+.++.++.-+.+
T Consensus 116 ~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 116 AAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred hhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 44444211 0112346888888888766 35799999999999999999888876554
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00015 Score=77.19 Aligned_cols=248 Identities=17% Similarity=0.141 Sum_probs=147.1
Q ss_pred EeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCcEEEeeEEeCCCCCEEEEE
Q 006375 19 RQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYA 98 (648)
Q Consensus 19 ~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~ 98 (648)
+.|.++-|+...+|++...++.+...+ + +.+-|.-.. +...++.|++||+.+.|+
T Consensus 133 pdg~~la~~~s~~G~e~~~l~v~Dl~t------------------g-~~l~d~i~~------~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 133 PDGKRLAYSLSDGGSEWYTLRVFDLET------------------G-KFLPDGIEN------PKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp TTSSEEEEEEEETTSSEEEEEEEETTT------------------T-EEEEEEEEE------EESEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEEEECCC------------------C-cCcCCcccc------cccceEEEeCCCCEEEEE
Confidence 468888899999999988887777642 2 343332111 122348999999999999
Q ss_pred EeCCCCe------EEEEEEEECCCCCee--e---ccccCc-cceeEEecCC-eEEEEEeCCCCCCceEEEEECCCC---C
Q 006375 99 EDTKGDE------IYTVYVIDIETGTPV--G---KPLVGV-TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD---Q 162 (648)
Q Consensus 99 ~~~~G~e------~~~l~v~dl~~g~~~--~---~~~~~~-~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~---~ 162 (648)
....+.. ..+|+.+.+.++... . ...... ...+.+|+|+ .|+........ ..++|++++..+ .
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPD 266 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS
T ss_pred EeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCc
Confidence 8666544 789999999887543 1 111222 4458889999 76665554333 478999999874 2
Q ss_pred CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccc-cccEEEEEECCCCC--cee-Eeeeccccee-eeEeecCCEEEEEe
Q 006375 163 SNDICLYHEKDDIYSLGLQASESKKFLFIASESK-ITRFVFYLDVSKPE--ELR-VLTPRVVGVD-TAASHRGNHFFITR 237 (648)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~-~~~~l~~~dl~~~~--~~~-~l~~~~~~~~-~~~s~dg~~l~~~~ 237 (648)
.....+....+.... .+... |..+++.++.. ....|+.+++++.. .++ .+.+...... -.++..+++|++..
T Consensus 267 ~~~~~l~~~~~~~~~-~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~ 343 (414)
T PF02897_consen 267 AKPKLLSPREDGVEY-YVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSY 343 (414)
T ss_dssp -SEEEEEESSSS-EE-EEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEE
T ss_pred CCcEEEeCCCCceEE-EEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEE
Confidence 334444443332222 22222 55556666544 45799999999876 233 4555444433 34777889999888
Q ss_pred ccCCCCCcEEEEEeCC-CCCcceeEecCCCCcccceEE--EeCCEEEEEEecCC-eeEEEEEEcCC
Q 006375 238 RSDELFNSELLACPVD-NTSETTVLIPHRESVKLQDIQ--LFIDHLAVYEREGG-LQKITTYRLPA 299 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~-~~~l~v~~~~~ 299 (648)
+.+ ...+|.++++. + . ....++......+.++. +..+.+.+.+..-. .+.++.+++..
T Consensus 344 ~~~--~~~~l~v~~~~~~-~-~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 344 REN--GSSRLRVYDLDDG-K-ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp EET--TEEEEEEEETT-T-E-EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred EEC--CccEEEEEECCCC-c-EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 874 45689999987 3 2 22222222222233333 34466766665544 34677777773
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00011 Score=75.57 Aligned_cols=251 Identities=13% Similarity=0.062 Sum_probs=121.9
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECC-CCCeee-c--cccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE-TGTPVG-K--PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~-~g~~~~-~--~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
..+.+||||++|+.+.... ..|.+++++ +|+... . ...+....++++|||+.+|+.... ...|..+++.
T Consensus 38 ~~l~~spd~~~lyv~~~~~----~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~---~~~v~v~~~~ 110 (330)
T PRK11028 38 QPMVISPDKRHLYVGVRPE----FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN---ANCVSVSPLD 110 (330)
T ss_pred ccEEECCCCCEEEEEECCC----CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC---CCeEEEEEEC
Confidence 3568999999886654432 356667765 454321 1 122223458899999544554321 2456677765
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCcee-------EeeecccceeeeEeecCCE
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR-------VLTPRVVGVDTAASHRGNH 232 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~-------~l~~~~~~~~~~~s~dg~~ 232 (648)
+.......+...........+.++|||+++++... ....|+++|+++...+. .+.....-....++|||+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~--~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL--KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY 188 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC--CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE
Confidence 43211111111111111234578999999986443 44678888886532121 1111111123458999997
Q ss_pred EEEEeccCCCCCcEEEEEeCCCC-Cccee---E--ecCCC--CcccceEE--EeCCEEEEEEecCCeeEEEEEEcCCCCC
Q 006375 233 FFITRRSDELFNSELLACPVDNT-SETTV---L--IPHRE--SVKLQDIQ--LFIDHLAVYEREGGLQKITTYRLPAVGE 302 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~-~~~~~---~--~~~~~--~~~~~~~~--~~~~~l~~~~~~~~~~~l~v~~~~~~g~ 302 (648)
+|..... . ..|..++++.. +..+. + ++... ......+. ++++++++. ..+...+.+++++..+.
T Consensus 189 lyv~~~~--~--~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~--~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 189 AYCVNEL--N--SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC--DRTASLISVFSVSEDGS 262 (330)
T ss_pred EEEEecC--C--CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe--cCCCCeEEEEEEeCCCC
Confidence 7665432 2 35555555421 12221 1 11110 01111233 444455544 33455788888865443
Q ss_pred cccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 303 PLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 303 ~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
.+..+ ..+.... ....+..++++..++++- ....--.+|..+..++.
T Consensus 263 ~~~~~---~~~~~~~---~p~~~~~~~dg~~l~va~-~~~~~v~v~~~~~~~g~ 309 (330)
T PRK11028 263 VLSFE---GHQPTET---QPRGFNIDHSGKYLIAAG-QKSHHISVYEIDGETGL 309 (330)
T ss_pred eEEEe---EEEeccc---cCCceEECCCCCEEEEEE-ccCCcEEEEEEcCCCCc
Confidence 22111 1111100 111244566777665543 22222345555656666
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00026 Score=72.07 Aligned_cols=203 Identities=14% Similarity=0.124 Sum_probs=115.5
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-ec---cccCccceeEEecCC-eEEEEEeCCCCCCceEE
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GK---PLVGVTASVEWAGNE-ALVYITMDEILRPDKAW 154 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-~~---~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~ 154 (648)
.+.+.-.++||.|-|+|= |+..-+|+|||....+.. .. .+.+....++|+.|+ +|+.+.... .+-.+++
T Consensus 59 ~~~vtVAkySPsG~yiAS-----GD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr-erfg~~F 132 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIAS-----GDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR-ERFGHVF 132 (603)
T ss_pred cceeEEEEeCCCceEEee-----cCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCc-cceeEEE
Confidence 355667799999998873 333448999997654432 21 334445569999999 998776532 1223333
Q ss_pred EEECCCCC-----------------C---------Cc--EEEEeecC----------CCeEEEEEeCCCCcEEEEEEccc
Q 006375 155 LHKLEADQ-----------------S---------ND--ICLYHEKD----------DIYSLGLQASESKKFLFIASESK 196 (648)
Q Consensus 155 ~~~l~~~~-----------------~---------~~--~~~~~~~~----------~~~~~~~~~s~Dg~~l~~~~~~~ 196 (648)
.++-++.. + +| ..+|+.+. ..|...+.+||||.+++-. .
T Consensus 133 ~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~---g 209 (603)
T KOG0318|consen 133 LWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATA---G 209 (603)
T ss_pred EecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEe---c
Confidence 43332210 0 11 12233221 1234457899999877532 2
Q ss_pred cccEEEEEECCCCCceeEeee---cccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccce
Q 006375 197 ITRFVFYLDVSKPEELRVLTP---RVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQD 272 (648)
Q Consensus 197 ~~~~l~~~dl~~~~~~~~l~~---~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (648)
.+..+|++|-.+++..-.+.. ...+ ....|+||+.+++-.+... ..+|+-+.... -..+|.....-+.++.+
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk---t~KIWdVs~~s-lv~t~~~~~~v~dqqvG 285 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK---TIKIWDVSTNS-LVSTWPMGSTVEDQQVG 285 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc---eEEEEEeeccc-eEEEeecCCchhceEEE
Confidence 346799999888872223331 1112 2245999999987776542 23555444332 22344554444445677
Q ss_pred EEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 273 IQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 273 ~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
.-|.+++|+.....+ .|..++.+
T Consensus 286 ~lWqkd~lItVSl~G---~in~ln~~ 308 (603)
T KOG0318|consen 286 CLWQKDHLITVSLSG---TINYLNPS 308 (603)
T ss_pred EEEeCCeEEEEEcCc---EEEEeccc
Confidence 788888887666543 34455554
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.1e-06 Score=82.91 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=73.2
Q ss_pred CCCcEEEEecCCCCCCCCCCCc-----hhHHHHHH-------CCCEEEEEccCCCC-C-CChhhhhcc-cc---cCCCCc
Q 006375 404 GSDPLLLYGYGSYEICNDPAFN-----SSRLSLLD-------RGFIFAIAQIRGGG-E-LGRQWYENG-KF---LKKKNT 465 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~-----~~~~~l~~-------~G~~v~~~~~rG~g-~-~g~~~~~~~-~~---~~~~~~ 465 (648)
.+..+||++|+-.|++...... ..+..++. .-|-|++.|+-|+. | .|..-.... .. .-...+
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 3457999999955533222110 12333333 35899999999875 2 232211111 10 112357
Q ss_pred HhHHHHHHHHHHHcCCCCCCeEE-EEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 466 FTDFIACAEYLIKNCYCTKEKLC-IEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 466 ~~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
+.|.+.+-+.|++.-.+ ++++ |+|.||||+.++..+..+||.++.+|..+.
T Consensus 129 i~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~ 180 (368)
T COG2021 129 IRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIAT 180 (368)
T ss_pred HHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecc
Confidence 89999999888776444 5665 999999999999999999998887766654
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=91.22 Aligned_cols=112 Identities=9% Similarity=0.029 Sum_probs=75.7
Q ss_pred CCCcEEEEecCCCCCCCCCCCchh-HHHHHHC--CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSS-RLSLLDR--GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 480 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~-~~~l~~~--G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 480 (648)
...|++|++||-........|... ...|..+ .+.|+++|.+|++... +..+.. .-...-.++.+.+++|.+..
T Consensus 39 ~~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~--y~~a~~--~t~~vg~~la~lI~~L~~~~ 114 (442)
T TIGR03230 39 HETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQH--YPTSAA--YTKLVGKDVAKFVNWMQEEF 114 (442)
T ss_pred CCCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCC--Cccccc--cHHHHHHHHHHHHHHHHHhh
Confidence 346899999995443322234432 3344432 6999999999877432 111110 00112256677777777554
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 481 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 481 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
..+.+++.++|+|+||.+++.++.+.|+++..+++..|.
T Consensus 115 gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 115 NYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred CCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 457799999999999999999999899999999988774
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00034 Score=70.61 Aligned_cols=161 Identities=12% Similarity=0.165 Sum_probs=92.5
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccC-ccceeEEec--CC-eEEEEEeCC-------------
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG-VTASVEWAG--NE-ALVYITMDE------------- 146 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~-~~~~~~Wsp--Dg-~l~y~~~~~------------- 146 (648)
+..+||+.+.|.|..+ + .+|+.+|++|++.... .++. ......|+. |+ .++......
T Consensus 85 g~~~s~~~~~~~Yv~~--~---~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~ 159 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKN--G---RSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFR 159 (386)
T ss_dssp T-EE-TTSSEEEEEET--T---TEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHH
T ss_pred ceEEecCCCeEEEEEC--C---CeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHH
Confidence 3578999999999764 2 2789999999887532 3333 334477863 44 444443311
Q ss_pred ----CCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCC-CCcEEEEEEccc---cccEEEEEECCCCCceeEeeec
Q 006375 147 ----ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESK---ITRFVFYLDVSKPEELRVLTPR 218 (648)
Q Consensus 147 ----~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-Dg~~l~~~~~~~---~~~~l~~~dl~~~~~~~~l~~~ 218 (648)
....+.|+.+++.++ +.+.++++. .|.--+.+|| |...|.|..... -+.+||+++.++.. .+++..+
T Consensus 160 e~~~a~p~~~i~~idl~tG--~~~~v~~~~--~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~ 234 (386)
T PF14583_consen 160 EFYEARPHCRIFTIDLKTG--ERKVVFEDT--DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRR 234 (386)
T ss_dssp HHHHC---EEEEEEETTT----EEEEEEES--S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS--
T ss_pred HHHhhCCCceEEEEECCCC--ceeEEEecC--ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecC
Confidence 123578999999998 567788765 4544566777 455555543322 24689999998887 7777665
Q ss_pred cccee---eeEeecCCEEEEEeccCCCCCcEEEEEeCCCC
Q 006375 219 VVGVD---TAASHRGNHFFITRRSDELFNSELLACPVDNT 255 (648)
Q Consensus 219 ~~~~~---~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~ 255 (648)
..+.. -+|++||..|+|.+...+...+-|+.+++++.
T Consensus 235 ~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 235 MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp -TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 54433 24999999999987755556678999999874
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=82.10 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=86.1
Q ss_pred eEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcH
Q 006375 387 TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF 466 (648)
Q Consensus 387 ~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~ 466 (648)
-..|+.++.|... +.+|+|+++||-.-. ...|+...+.+++.||+|++|+.-.... ......+
T Consensus 31 pPkpLlI~tP~~~----G~yPVilF~HG~~l~--ns~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~~~Ei 93 (307)
T PF07224_consen 31 PPKPLLIVTPSEA----GTYPVILFLHGFNLY--NSFYSQLLAHIASHGFIVVAPQLYTLFP-----------PDGQDEI 93 (307)
T ss_pred CCCCeEEecCCcC----CCccEEEEeechhhh--hHHHHHHHHHHhhcCeEEEechhhcccC-----------CCchHHH
Confidence 3567777777664 889999999994322 2235556678889999999998753211 2333556
Q ss_pred hHHHHHHHHHHHc--------CCCCCCeEEEEeeChhHHHHHHHHhhCC-C-ceeEEEecCCccc
Q 006375 467 TDFIACAEYLIKN--------CYCTKEKLCIEGRSAGGLLIGAVLNMRP-D-LFKAAVAAVPFVD 521 (648)
Q Consensus 467 ~D~~~~~~~l~~~--------~~~d~~~i~i~G~S~GG~l~~~~~~~~p-~-~~~a~v~~~~~~d 521 (648)
++...+++||... -..+.++++++|||.||-.|.++|..+. + .|.|+|..-|+.-
T Consensus 94 ~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G 158 (307)
T PF07224_consen 94 KSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAG 158 (307)
T ss_pred HHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCC
Confidence 8888999999753 1257799999999999999998888662 2 4778887777643
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-06 Score=83.25 Aligned_cols=213 Identities=16% Similarity=0.168 Sum_probs=116.0
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 482 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 482 (648)
.+.|.++.+||-.|+.. .|......|+.. |--|+.+|+|-+|.....- ........+|+...++..... .
T Consensus 50 ~~~Pp~i~lHGl~GS~~--Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~-----~h~~~~ma~dv~~Fi~~v~~~--~ 120 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSKE--NWRSVAKNLSRKLGRDVYAVDVRNHGSSPKIT-----VHNYEAMAEDVKLFIDGVGGS--T 120 (315)
T ss_pred CCCCceEEecccccCCC--CHHHHHHHhcccccCceEEEecccCCCCcccc-----ccCHHHHHHHHHHHHHHcccc--c
Confidence 56899999999877663 345555566654 7899999999888653321 111222334444444443322 1
Q ss_pred CCCeEEEEeeChhH-HHHHHHHhhCCCceeEEEe-c-CC-cc--------ccccccc--CCCC---CC------------
Q 006375 483 TKEKLCIEGRSAGG-LLIGAVLNMRPDLFKAAVA-A-VP-FV--------DVLTTML--DPTI---PL------------ 533 (648)
Q Consensus 483 d~~~i~i~G~S~GG-~l~~~~~~~~p~~~~a~v~-~-~~-~~--------d~~~~~~--~~~~---~~------------ 533 (648)
--.++.+.|||||| -++++.....|+++..+|+ . +| .+ .++..+. +... +-
T Consensus 121 ~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~~~ 200 (315)
T KOG2382|consen 121 RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIEVG 200 (315)
T ss_pred ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHHHh
Confidence 23679999999999 5555555557876554443 2 23 11 1111111 1110 00
Q ss_pred ---Ccccc-------------ccc-CCC-CCHHHHHHHHcCC---ccccCCCCCCCeEEEeecCCCCccCCchHHHHHHH
Q 006375 534 ---TTAEW-------------EEW-GDP-WKEEFYFYMKSYS---PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAK 592 (648)
Q Consensus 534 ---~~~~~-------------~~~-g~~-~~~~~~~~~~~~s---p~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~ 592 (648)
...+| ..| ++. .-.+.+..+...+ .+.+ .....| +|+++|.++..|+..+-..+...
T Consensus 201 ~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~-~~~~~p-vlfi~g~~S~fv~~~~~~~~~~~ 278 (315)
T KOG2382|consen 201 FDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLED-GPYTGP-VLFIKGLQSKFVPDEHYPRMEKI 278 (315)
T ss_pred cchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccc-cccccc-eeEEecCCCCCcChhHHHHHHHh
Confidence 00000 001 111 0111222211222 2233 444677 99999999999997655555443
Q ss_pred HHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHh
Q 006375 593 LREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 636 (648)
.. ..++..++ ++||+...+.++.+.+. +..|+..+
T Consensus 279 fp----~~e~~~ld---~aGHwVh~E~P~~~~~~--i~~Fl~~~ 313 (315)
T KOG2382|consen 279 FP----NVEVHELD---EAGHWVHLEKPEEFIES--ISEFLEEP 313 (315)
T ss_pred cc----chheeecc---cCCceeecCCHHHHHHH--HHHHhccc
Confidence 33 34555664 79999988888766663 45577654
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6e-06 Score=75.03 Aligned_cols=187 Identities=19% Similarity=0.198 Sum_probs=109.1
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccC------CCCCCChhhhhccccc-CCC---CcHhHHHHHHHHH
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIR------GGGELGRQWYENGKFL-KKK---NTFTDFIACAEYL 476 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~r------G~g~~g~~~~~~~~~~-~~~---~~~~D~~~~~~~l 476 (648)
-+||++||-..++.. +......+--+....++|.-. -.|..+..|.+...-. +.. ..+.-..+.+..|
T Consensus 4 atIi~LHglGDsg~~--~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~L 81 (206)
T KOG2112|consen 4 ATIIFLHGLGDSGSG--WAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIANL 81 (206)
T ss_pred EEEEEEecCCCCCcc--HHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHHH
Confidence 489999994333322 222222222245555555321 2334445565432221 111 1222233334444
Q ss_pred HHc---CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHH
Q 006375 477 IKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYM 553 (648)
Q Consensus 477 ~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 553 (648)
+++ ..++++||++-|.|+||.++++++..+|.....++...++.--... . .|.
T Consensus 82 i~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~----~------------~~~-------- 137 (206)
T KOG2112|consen 82 IDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASI----G------------LPG-------- 137 (206)
T ss_pred HHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchh----h------------ccC--------
Confidence 433 3478999999999999999999999887655555555554321111 0 110
Q ss_pred HcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHH
Q 006375 554 KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 633 (648)
Q Consensus 554 ~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 633 (648)
.-|-.+ .+|++..||+.|+.||..-..+..+.|+..+.. +.++..++-+|... .+ ++.+...|+
T Consensus 138 --~~~~~~-----~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~---~~f~~y~g~~h~~~---~~---e~~~~~~~~ 201 (206)
T KOG2112|consen 138 --WLPGVN-----YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVR---VTFKPYPGLGHSTS---PQ---ELDDLKSWI 201 (206)
T ss_pred --CccccC-----cchhheecccCCceeehHHHHHHHHHHHHcCCc---eeeeecCCcccccc---HH---HHHHHHHHH
Confidence 001101 335999999999999999999999999998866 56666668899532 22 333456777
Q ss_pred HH
Q 006375 634 MR 635 (648)
Q Consensus 634 ~~ 635 (648)
.+
T Consensus 202 ~~ 203 (206)
T KOG2112|consen 202 KT 203 (206)
T ss_pred HH
Confidence 65
|
|
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.1e-07 Score=80.98 Aligned_cols=209 Identities=14% Similarity=0.110 Sum_probs=116.6
Q ss_pred EEEEecCCCCCCCCCCCchhHHHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCe
Q 006375 408 LLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 486 (648)
Q Consensus 408 ~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 486 (648)
.||.+-|.-|+.. ..|-+....+-.. -+.++..|.||=|-.-..-++ ..-+--.+|..+|++-.... +..+
T Consensus 44 ~iLlipGalGs~~-tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~Rk----f~~~ff~~Da~~avdLM~aL---k~~~ 115 (277)
T KOG2984|consen 44 YILLIPGALGSYK-TDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPERK----FEVQFFMKDAEYAVDLMEAL---KLEP 115 (277)
T ss_pred eeEeccccccccc-ccCCHHHHhcCCCCceEEEEECCCCCCCCCCCccc----chHHHHHHhHHHHHHHHHHh---CCCC
Confidence 6777778766543 3466655544333 499999999964432111110 00011236777777776663 5589
Q ss_pred EEEEeeChhHHHHHHHHhhCCCceeEEEecCCc--ccccccccCCCCCCCccccc---------ccCCCCCHHHHHH---
Q 006375 487 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF--VDVLTTMLDPTIPLTTAEWE---------EWGDPWKEEFYFY--- 552 (648)
Q Consensus 487 i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~--~d~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~--- 552 (648)
+.|+|+|-||..++-+|+++++.+...|....- ++-...|....+.- ...|. -||-...+..++.
T Consensus 116 fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRd-v~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD 194 (277)
T KOG2984|consen 116 FSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRD-VNKWSARGRQPYEDHYGPETFRTQWAAWVD 194 (277)
T ss_pred eeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHH-HhhhhhhhcchHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999877765554432 12112221111110 01121 1221111111111
Q ss_pred -HHc---CCc----cccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHH
Q 006375 553 -MKS---YSP----VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLR 624 (648)
Q Consensus 553 -~~~---~sp----~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~ 624 (648)
+.+ +.- -.-+.+++|| +||+||..|+.|+-.+.--+ ..+.. -.++.+++ .++|...-...+.++
T Consensus 195 ~v~qf~~~~dG~fCr~~lp~vkcP-tli~hG~kDp~~~~~hv~fi-~~~~~---~a~~~~~p---eGkHn~hLrya~eFn 266 (277)
T KOG2984|consen 195 VVDQFHSFCDGRFCRLVLPQVKCP-TLIMHGGKDPFCGDPHVCFI-PVLKS---LAKVEIHP---EGKHNFHLRYAKEFN 266 (277)
T ss_pred HHHHHhhcCCCchHhhhcccccCC-eeEeeCCcCCCCCCCCccch-hhhcc---cceEEEcc---CCCcceeeechHHHH
Confidence 111 111 1235567999 99999999999987776433 33332 22333444 789976555555555
Q ss_pred HHHHHHHHHHH
Q 006375 625 EAAFTYTFLMR 635 (648)
Q Consensus 625 ~~~~~~~fl~~ 635 (648)
. .+.+||..
T Consensus 267 k--lv~dFl~~ 275 (277)
T KOG2984|consen 267 K--LVLDFLKS 275 (277)
T ss_pred H--HHHHHHhc
Confidence 5 45788764
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00088 Score=65.67 Aligned_cols=224 Identities=13% Similarity=0.089 Sum_probs=118.1
Q ss_pred CceEEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC-CCeeec------ccc----C----cc
Q 006375 64 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGK------PLV----G----VT 128 (648)
Q Consensus 64 ~~~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~-g~~~~~------~~~----~----~~ 128 (648)
+.-.+++--.... ... ..+++++||++|..+.=-.| .|.|..+.. |..... +.. . ..
T Consensus 76 G~Lt~ln~~~~~g-~~p---~yvsvd~~g~~vf~AnY~~g----~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~ 147 (346)
T COG2706 76 GRLTFLNRQTLPG-SPP---CYVSVDEDGRFVFVANYHSG----SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHV 147 (346)
T ss_pred CeEEEeeccccCC-CCC---eEEEECCCCCEEEEEEccCc----eEEEEEcccCCccccceeeeecCCCCCCccccCCcc
Confidence 3444555433322 222 35688999998866544333 677777754 433210 001 0 02
Q ss_pred ceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEee---cCCCeEEEEEeCCCCcEEEEEEccccccEEEEEE
Q 006375 129 ASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHE---KDDIYSLGLQASESKKFLFIASESKITRFVFYLD 205 (648)
Q Consensus 129 ~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 205 (648)
....++||++++++.. ....+++.+++..+.-.......- ..++ -+.++|+|+++++...-.++-.+|-++
T Consensus 148 H~a~~tP~~~~l~v~D---LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR---Hi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 148 HSANFTPDGRYLVVPD---LGTDRIFLYDLDDGKLTPADPAEVKPGAGPR---HIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred ceeeeCCCCCEEEEee---cCCceEEEEEcccCccccccccccCCCCCcc---eEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 3477899995445443 234458888887653222211111 1122 246899999988765544455666676
Q ss_pred CCCCC--ceeEeeecc-------cceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee-EecCCCCcccceEEE
Q 006375 206 VSKPE--ELRVLTPRV-------VGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQL 275 (648)
Q Consensus 206 l~~~~--~~~~l~~~~-------~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 275 (648)
-..++ +++.+..-. ......+++||+.| +.+|+ +..-.-++.++.++ +.... -....+.....+|.+
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL-YasNR-g~dsI~~f~V~~~~-g~L~~~~~~~teg~~PR~F~i 298 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL-YASNR-GHDSIAVFSVDPDG-GKLELVGITPTEGQFPRDFNI 298 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEE-EEecC-CCCeEEEEEEcCCC-CEEEEEEEeccCCcCCcccee
Confidence 65565 222222111 12345699999855 56676 33334556666655 32222 111233334667777
Q ss_pred eCCEEEEEEecCCeeEEEEEEcCCCCCcc
Q 006375 276 FIDHLAVYEREGGLQKITTYRLPAVGEPL 304 (648)
Q Consensus 276 ~~~~l~~~~~~~~~~~l~v~~~~~~g~~~ 304 (648)
+.+.-+++........+.++..+...+.+
T Consensus 299 ~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 299 NPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 66433333333333458888887655544
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00011 Score=76.00 Aligned_cols=202 Identities=14% Similarity=0.189 Sum_probs=103.1
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC-CCeeec--cc------------cC-ccceeEEecCCeEEEEEeCCCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGK--PL------------VG-VTASVEWAGNEALVYITMDEIL 148 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~-g~~~~~--~~------------~~-~~~~~~WspDg~l~y~~~~~~~ 148 (648)
.+.++|||++|..+--.+| .|.+++++. |..... .. .. ....+.++|||+.+|+..-
T Consensus 91 ~i~~~~~g~~l~vany~~g----~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl--- 163 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGG----SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL--- 163 (345)
T ss_dssp EEEECTTSSEEEEEETTTT----EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET---
T ss_pred EEEEecCCCEEEEEEccCC----eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec---
Confidence 4678999999876654444 577777765 443211 01 11 1245889999955566542
Q ss_pred CCceEEEEECCCCCCCcE--EEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECC--CCCceeEe---eec---
Q 006375 149 RPDKAWLHKLEADQSNDI--CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS--KPEELRVL---TPR--- 218 (648)
Q Consensus 149 ~~~~l~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~--~~~~~~~l---~~~--- 218 (648)
....|+.++++....+-. .....+...---.+.++|||+++++.... .+.|.++++. ++. ++.+ ...
T Consensus 164 G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~--s~~v~v~~~~~~~g~-~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 164 GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL--SNTVSVFDYDPSDGS-LTEIQTISTLPEG 240 (345)
T ss_dssp TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT--TTEEEEEEEETTTTE-EEEEEEEESCETT
T ss_pred CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC--CCcEEEEeecccCCc-eeEEEEeeecccc
Confidence 345688888876531111 11111111112245789999999876543 3555555554 443 2222 111
Q ss_pred c----cceeeeEeecCCEEEEEeccCCCCCcEEEEEeC--CCCCccee--EecCCCCcccceEEEe--CCEEEEEEecCC
Q 006375 219 V----VGVDTAASHRGNHFFITRRSDELFNSELLACPV--DNTSETTV--LIPHRESVKLQDIQLF--IDHLAVYEREGG 288 (648)
Q Consensus 219 ~----~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 288 (648)
. ......++|||++||. +|+ +.. .|..+++ ++ +..+. .++.. +.....+.++ ++++++... .
T Consensus 241 ~~~~~~~~~i~ispdg~~lyv-snr-~~~--sI~vf~~d~~~-g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~--~ 312 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYV-SNR-GSN--SISVFDLDPAT-GTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQ--D 312 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEE-EEC-TTT--EEEEEEECTTT-TTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEET--T
T ss_pred ccccCCceeEEEecCCCEEEE-Eec-cCC--EEEEEEEecCC-CceEEEEEEeCC-CCCccEEEEeCCCCEEEEEec--C
Confidence 1 1123459999997655 555 233 4555554 33 23332 33322 2235667664 455555443 3
Q ss_pred eeEEEEEEcCCCCCcc
Q 006375 289 LQKITTYRLPAVGEPL 304 (648)
Q Consensus 289 ~~~l~v~~~~~~g~~~ 304 (648)
...+.+++++...+.+
T Consensus 313 s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKL 328 (345)
T ss_dssp TTEEEEEEEETTTTEE
T ss_pred CCeEEEEEEeCCCCcE
Confidence 4467777777545543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-05 Score=75.80 Aligned_cols=116 Identities=10% Similarity=0.045 Sum_probs=72.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
.+..++|||+|+.+|...... ...|.++|+++...... .......+.|||+| .++..... +...+|..+++.+
T Consensus 61 ~I~~~~WsP~g~~favi~g~~---~~~v~lyd~~~~~i~~~-~~~~~n~i~wsP~G~~l~~~g~~--n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSM---PAKVTLYDVKGKKIFSF-GTQPRNTISWSPDGRFLVLAGFG--NLNGDLEFWDVRK 134 (194)
T ss_pred ceEEEEECcCCCEEEEEEccC---CcccEEEcCcccEeEee-cCCCceEEEECCCCCEEEEEEcc--CCCcEEEEEECCC
Confidence 378999999999998875322 23788999973333321 12234469999999 77776653 2335577888774
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcc---ccccEEEEEECCC
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASES---KITRFVFYLDVSK 208 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~---~~~~~l~~~dl~~ 208 (648)
. ..+.... ......+.|||||++++..+.. +.++.+.+++..+
T Consensus 135 ~----~~i~~~~-~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 135 K----KKISTFE-HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred C----EEeeccc-cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 3 2333222 2234578999999999875542 1234444555443
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=75.20 Aligned_cols=174 Identities=21% Similarity=0.233 Sum_probs=96.5
Q ss_pred CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC--CCCCeEEEEeeChhHHHHHHHHhhC------
Q 006375 435 GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY--CTKEKLCIEGRSAGGLLIGAVLNMR------ 506 (648)
Q Consensus 435 G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~--~d~~~i~i~G~S~GG~l~~~~~~~~------ 506 (648)
-+.++.+.++|.+.. .+..-++|+.+.++.|...-. .-....++.||||||.+|..++.+.
T Consensus 33 ~iel~avqlPGR~~r-----------~~ep~~~di~~Lad~la~el~~~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~ 101 (244)
T COG3208 33 DIELLAVQLPGRGDR-----------FGEPLLTDIESLADELANELLPPLLDAPFALFGHSMGAMLAFEVARRLERAGLP 101 (244)
T ss_pred hhheeeecCCCcccc-----------cCCcccccHHHHHHHHHHHhccccCCCCeeecccchhHHHHHHHHHHHHHcCCC
Confidence 488999999986642 112234677777777665422 2335799999999999998887652
Q ss_pred CCceeEEEecCCcccccccccCCCCCCCcccc----ccc-CCC----CCHHHH-----------HHHHcCCccccCCCCC
Q 006375 507 PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW----EEW-GDP----WKEEFY-----------FYMKSYSPVDNVKAQN 566 (648)
Q Consensus 507 p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~----~~~-g~~----~~~~~~-----------~~~~~~sp~~~~~~~~ 566 (648)
|..+-...+.+|..+.-... ......++ .++ |.| ++++.. ..+..|.-... ..++
T Consensus 102 p~~lfisg~~aP~~~~~~~i----~~~~D~~~l~~l~~lgG~p~e~led~El~~l~LPilRAD~~~~e~Y~~~~~-~pl~ 176 (244)
T COG3208 102 PRALFISGCRAPHYDRGKQI----HHLDDADFLADLVDLGGTPPELLEDPELMALFLPILRADFRALESYRYPPP-APLA 176 (244)
T ss_pred cceEEEecCCCCCCcccCCc----cCCCHHHHHHHHHHhCCCChHHhcCHHHHHHHHHHHHHHHHHhcccccCCC-CCcC
Confidence 22222233444522221111 11111111 222 444 344432 22223332222 3458
Q ss_pred CCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 567 YPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 567 ~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
+| +.++.|++|..|...+...+.+.. +...++.++ .+||+......+ ..++++.++++
T Consensus 177 ~p-i~~~~G~~D~~vs~~~~~~W~~~t---~~~f~l~~f----dGgHFfl~~~~~------~v~~~i~~~l~ 234 (244)
T COG3208 177 CP-IHAFGGEKDHEVSRDELGAWREHT---KGDFTLRVF----DGGHFFLNQQRE------EVLARLEQHLA 234 (244)
T ss_pred cc-eEEeccCcchhccHHHHHHHHHhh---cCCceEEEe----cCcceehhhhHH------HHHHHHHHHhh
Confidence 88 999999999998755444444443 335555666 689987654432 23456666664
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.38 E-value=1e-05 Score=85.87 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=62.0
Q ss_pred hhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHh----HHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHH
Q 006375 426 SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFT----DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGA 501 (648)
Q Consensus 426 ~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~----D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~ 501 (648)
.....|+++|+.|++++.|.-+...+. ..++ .+.+|++.+.+. +...+|-++|+|+||.+++.
T Consensus 238 SlVr~lv~qG~~VflIsW~nP~~~~r~-----------~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~ 304 (560)
T TIGR01839 238 SFVQYCLKNQLQVFIISWRNPDKAHRE-----------WGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAA 304 (560)
T ss_pred hHHHHHHHcCCeEEEEeCCCCChhhcC-----------CCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHH
Confidence 346789999999999999875532222 2334 445566666554 45689999999999998886
Q ss_pred ----HHhhCCC-ceeEEEecCCcccc
Q 006375 502 ----VLNMRPD-LFKAAVAAVPFVDV 522 (648)
Q Consensus 502 ----~~~~~p~-~~~a~v~~~~~~d~ 522 (648)
+++++++ .++.+++.+..+|.
T Consensus 305 ~~a~~aA~~~~~~V~sltllatplDf 330 (560)
T TIGR01839 305 LVGHLQALGQLRKVNSLTYLVSLLDS 330 (560)
T ss_pred HHHHHHhcCCCCceeeEEeeeccccc
Confidence 6777775 79999988877774
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00021 Score=67.13 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=116.3
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
..+....+|+||++ |++...+| .+++||+++|+....-... ...++++++|+ +|. +... ...+..++
T Consensus 64 H~v~dv~~s~dg~~-alS~swD~----~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qiv-SGSr----DkTiklwn 133 (315)
T KOG0279|consen 64 HFVSDVVLSSDGNF-ALSASWDG----TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIV-SGSR----DKTIKLWN 133 (315)
T ss_pred eEecceEEccCCce-EEeccccc----eEEEEEecCCcEEEEEEecCCceEEEEecCCCceee-cCCC----cceeeeee
Confidence 56778999999996 55555444 8999999999766432211 24569999999 664 4332 23355555
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCC-cEEEEEEccccccEEEEEECCCCCceeEeeecccc-e-eeeEeecCCEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESK-KFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-V-DTAASHRGNHFF 234 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg-~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~-~~~~s~dg~~l~ 234 (648)
.-+. -...+.++....|..-+.|+|.. .-++++.. -+.-+-++|+++-+ .+.......+ + ...+||||..+.
T Consensus 134 t~g~--ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s--~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 134 TLGV--CKYTIHEDSHREWVSCVRFSPNESNPIIVSAS--WDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred eccc--EEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc--CCceEEEEccCCcc-hhhccccccccEEEEEECCCCCEEe
Confidence 5443 12233332224566567899986 33443332 23457778888765 3332222222 2 245999998553
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 235 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
. +....+++..|++.... +..-+....+.++.+.++..++....+ ..+.+++++.
T Consensus 209 s-----Ggkdg~~~LwdL~~~k~---lysl~a~~~v~sl~fspnrywL~~at~--~sIkIwdl~~ 263 (315)
T KOG0279|consen 209 S-----GGKDGEAMLWDLNEGKN---LYSLEAFDIVNSLCFSPNRYWLCAATA--TSIKIWDLES 263 (315)
T ss_pred c-----CCCCceEEEEEccCCce---eEeccCCCeEeeEEecCCceeEeeccC--CceEEEeccc
Confidence 3 33457899999976322 333333345777888888776665443 3478888884
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00065 Score=70.40 Aligned_cols=253 Identities=15% Similarity=0.101 Sum_probs=123.9
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
.....+||||+++ |..+++| .|.++|+.+++.... .......+++.|+|| +++.... .+..+..+|..+
T Consensus 39 h~~~~~s~Dgr~~-yv~~rdg----~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~----~~~~v~v~D~~t 109 (369)
T PF02239_consen 39 HAGLKFSPDGRYL-YVANRDG----TVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANY----EPGTVSVIDAET 109 (369)
T ss_dssp EEEEE-TT-SSEE-EEEETTS----EEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEE----ETTEEEEEETTT
T ss_pred eeEEEecCCCCEE-EEEcCCC----eEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEec----CCCceeEecccc
Confidence 4567899999985 4555655 689999999997643 222234569999999 5544433 234577888776
Q ss_pred CCCCcEEEEeecC-----CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCce--eEeeecccceeeeEeecCCEE
Q 006375 161 DQSNDICLYHEKD-----DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL--RVLTPRVVGVDTAASHRGNHF 233 (648)
Q Consensus 161 ~~~~~~~~~~~~~-----~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~--~~l~~~~~~~~~~~s~dg~~l 233 (648)
.+. -..+-.... ..-...+.-++++...+++. +...+||++|..+.+.+ +.+.....-.+..|+|+|+++
T Consensus 110 le~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l--kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~ 186 (369)
T PF02239_consen 110 LEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL--KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYF 186 (369)
T ss_dssp --E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE--TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEE
T ss_pred ccc-eeecccccccccccCCCceeEEecCCCCEEEEEE--ccCCeEEEEEeccccccceeeecccccccccccCccccee
Confidence 521 111211110 11123455578877655543 34579999998876511 222222222445699999988
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCc---ccceEEEeCCEEEEEEecCCeeEEEEEEcCCCC-CcccccCC
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHRESV---KLQDIQLFIDHLAVYEREGGLQKITTYRLPAVG-EPLKSLQG 309 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g-~~~~~l~~ 309 (648)
+...+.. -++..+|.++ .....++...... ....+-..+-+.+......+...+-.+..+... .....+..
T Consensus 187 ~va~~~s----n~i~viD~~~-~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 187 LVAANGS----NKIAVIDTKT-GKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp EEEEGGG----TEEEEEETTT-TEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred eeccccc----ceeEEEeecc-ceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence 7776652 2788888876 3333333322111 122232233345555444444433444333211 00011111
Q ss_pred CceeecCCCeeeeeCCCCcccccEEEEE-EeeCCCCCEEEEEECCCCc
Q 006375 310 GKSVEFIDPVYSIDPSESVFSSRILRFH-YSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 310 ~~~i~~~~~~~~v~~~~~~~~~~~l~~~-~ss~~~P~~~~~~d~~~~~ 356 (648)
.+.|....+. + .+..++++..+++. +.++. -..+..+|.++.+
T Consensus 262 v~~I~~~G~g--l-Fi~thP~s~~vwvd~~~~~~-~~~v~viD~~tl~ 305 (369)
T PF02239_consen 262 VKTIPTQGGG--L-FIKTHPDSRYVWVDTFLNPD-ADTVQVIDKKTLK 305 (369)
T ss_dssp EEEEE-SSSS-----EE--TT-SEEEEE-TT-SS-HT-EEEEECCGTE
T ss_pred EEEEECCCCc--c-eeecCCCCccEEeeccCCCC-CceEEEEECcCcc
Confidence 1234433222 1 12346788877776 33333 4679999988875
|
... |
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.2e-06 Score=80.04 Aligned_cols=101 Identities=19% Similarity=0.150 Sum_probs=65.5
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHC--CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDR--GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
.|.|+++||.++...... .....+... .|.++.+|.||.|... .. ........+.++.+.+.-..
T Consensus 21 ~~~i~~~hg~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~g~g~s~----~~------~~~~~~~~~~~~~~~~~~~~- 87 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWR--PVFKVLPALAARYRVIAPDLRGHGRSD----PA------GYSLSAYADDLAALLDALGL- 87 (282)
T ss_pred CCeEEEeCCCCCchhhhH--HHHHHhhccccceEEEEecccCCCCCC----cc------cccHHHHHHHHHHHHHHhCC-
Confidence 459999999876544332 211222221 1999999999887654 00 11112223333333333222
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
.++.++|+|+||.++..++.++|+.++++|+..+..
T Consensus 88 -~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 88 -EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred -CceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 349999999999999999999999999998887653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0006 Score=66.83 Aligned_cols=223 Identities=14% Similarity=0.125 Sum_probs=125.0
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEe-cCCeEEEEEeCCCCCCceEEEEECCCCCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWA-GNEALVYITMDEILRPDKAWLHKLEADQS 163 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~Ws-pDg~l~y~~~~~~~~~~~l~~~~l~~~~~ 163 (648)
+|.|.+....|.|+--.+| +|+.+++++++......+... ++... +||.+++.... .+.+.++.++
T Consensus 4 gp~~d~~~g~l~~~D~~~~----~i~~~~~~~~~~~~~~~~~~~-G~~~~~~~g~l~v~~~~------~~~~~d~~~g-- 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGG----RIYRVDPDTGEVEVIDLPGPN-GMAFDRPDGRLYVADSG------GIAVVDPDTG-- 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTT----EEEEEETTTTEEEEEESSSEE-EEEEECTTSEEEEEETT------CEEEEETTTT--
T ss_pred ceEEECCCCEEEEEEcCCC----EEEEEECCCCeEEEEecCCCc-eEEEEccCCEEEEEEcC------ceEEEecCCC--
Confidence 6889886666655533333 899999999887654444433 46666 67677665431 2455587776
Q ss_pred CcEEEEeec-C---CCeEEEEEeCCCCcEEEEEEcccc----c--cEEEEEECCCCCceeEeeecccc-eeeeEeecCCE
Q 006375 164 NDICLYHEK-D---DIYSLGLQASESKKFLFIASESKI----T--RFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNH 232 (648)
Q Consensus 164 ~~~~~~~~~-~---~~~~~~~~~s~Dg~~l~~~~~~~~----~--~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~ 232 (648)
+-+.+.... . .....++.+.+||+ |+++..... . ..||+++.+ ++ .+.+...... .-..|+|||+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchh
Confidence 334444432 1 22344788999998 666543321 1 679999998 54 4544433322 22459999998
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCc----ceeEecCCC-CcccceEEEeCC-EEEEEEecCCeeEEEEEEcCCCCCcccc
Q 006375 233 FFITRRSDELFNSELLACPVDNTSE----TTVLIPHRE-SVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKS 306 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~ 306 (648)
||+.... +.+|++++++..+. .+.+..... .....++.++.+ .+++... +..++.+++.+ |..+
T Consensus 148 lyv~ds~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~--~~~~I~~~~p~--G~~~-- 217 (246)
T PF08450_consen 148 LYVADSF----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW--GGGRIVVFDPD--GKLL-- 217 (246)
T ss_dssp EEEEETT----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE--TTTEEEEEETT--SCEE--
T ss_pred eeecccc----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc--CCCEEEEECCC--ccEE--
Confidence 8876443 35799998864222 121222222 224778888876 4444443 33578888776 5533
Q ss_pred cCCCceeecCCCeeeeeCCCC-cccccEEEEEEe
Q 006375 307 LQGGKSVEFIDPVYSIDPSES-VFSSRILRFHYS 339 (648)
Q Consensus 307 l~~~~~i~~~~~~~~v~~~~~-~~~~~~l~~~~s 339 (648)
..+.+|.+. .....+ .++.+.|+++.+
T Consensus 218 ----~~i~~p~~~--~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 218 ----REIELPVPR--PTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ----EEEE-SSSS--EEEEEEESTTSSEEEEEEB
T ss_pred ----EEEcCCCCC--EEEEEEECCCCCEEEEEeC
Confidence 345555321 111111 235566766643
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00062 Score=67.26 Aligned_cols=236 Identities=18% Similarity=0.159 Sum_probs=129.8
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc-cCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|+|+|++|+.... + ..|+++++.+++.... .. ......+.|+|++ .++.... ...|+.+++
T Consensus 11 ~i~~~~~~~~~~~l~~~~~-~----g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~~~ 80 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSG-D----GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-----DKTIRLWDL 80 (289)
T ss_pred CEEEEEEcCCCCEEEEeec-C----cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC-----CCeEEEEEc
Confidence 4678899999999988764 2 3788999988764322 11 1223468999999 6655433 345888888
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEe
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITR 237 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~ 237 (648)
.++ +....+.... .....+.|+++++.++... ....|+++|+.+++....+...... ....++|++..++..+
T Consensus 81 ~~~--~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 81 ETG--ECVRTLTGHT-SYVSSVAFSPDGRILSSSS---RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred Ccc--cceEEEeccC-CcEEEEEEcCCCCEEEEec---CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence 765 2233333322 2344678999977665433 3467889998865512223222222 2345888876554443
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC--EEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeec
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEF 315 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~ 315 (648)
.. ..|..+|+....... .+... ...+..+.+.++ .+++... ...+.++++.. +.....+. ..
T Consensus 155 ~~-----~~i~i~d~~~~~~~~-~~~~~-~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~-~~~~~~~~-----~~ 218 (289)
T cd00200 155 QD-----GTIKLWDLRTGKCVA-TLTGH-TGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLST-GKCLGTLR-----GH 218 (289)
T ss_pred CC-----CcEEEEEccccccce-eEecC-ccccceEEECCCcCEEEEecC---CCcEEEEECCC-Cceecchh-----hc
Confidence 22 357777876432222 23222 223566777665 4444433 34677888763 22111110 11
Q ss_pred CCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 316 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+. .+..+.++++ +.+++..+ ..+.++.+++.+++
T Consensus 219 ~~---~i~~~~~~~~-~~~~~~~~---~~~~i~i~~~~~~~ 252 (289)
T cd00200 219 EN---GVNSVAFSPD-GYLLASGS---EDGTIRVWDLRTGE 252 (289)
T ss_pred CC---ceEEEEEcCC-CcEEEEEc---CCCcEEEEEcCCce
Confidence 11 1222333444 33444333 34678888887655
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.5e-05 Score=76.43 Aligned_cols=122 Identities=15% Similarity=0.046 Sum_probs=78.6
Q ss_pred EEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccc--------cCC
Q 006375 391 ICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF--------LKK 462 (648)
Q Consensus 391 ~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~--------~~~ 462 (648)
..++.|+.. .....|++|++.|-............+..|++.|+..++....-.|..=..- +.+.. ...
T Consensus 79 ~~~~~P~~~--~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~-Q~~s~l~~VsDl~~~g 155 (348)
T PF09752_consen 79 FQLLLPKRW--DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKD-QRRSSLRNVSDLFVMG 155 (348)
T ss_pred EEEEECCcc--ccCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhH-hhcccccchhHHHHHH
Confidence 444666653 2245799999998433332222333356778889998888765433211110 00000 112
Q ss_pred CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 463 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 463 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
...+.+..+.+.|+.++|+ .++++.|.||||.+|..++...|..+.++-+.++
T Consensus 156 ~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~ 208 (348)
T PF09752_consen 156 RATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSW 208 (348)
T ss_pred hHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecc
Confidence 2466788889999999987 6999999999999999999988886665555554
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.6e-06 Score=78.64 Aligned_cols=215 Identities=15% Similarity=0.183 Sum_probs=110.8
Q ss_pred EeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCC--C--hhhhhc
Q 006375 381 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGEL--G--RQWYEN 456 (648)
Q Consensus 381 ~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~--g--~~~~~~ 456 (648)
+.-.+|.+|..|-..|++. ...++|+||...| |+..+. .|...+.+|+..||.|+.+|.--+=|. | .+|..
T Consensus 7 i~~~~~~~I~vwet~P~~~--~~~~~~tiliA~G-f~rrmd-h~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~eftm- 81 (294)
T PF02273_consen 7 IRLEDGRQIRVWETRPKNN--EPKRNNTILIAPG-FARRMD-HFAGLAEYLSANGFHVIRYDSLNHVGLSSGDINEFTM- 81 (294)
T ss_dssp EEETTTEEEEEEEE---TT--S---S-EEEEE-T-T-GGGG-GGHHHHHHHHTTT--EEEE---B-------------H-
T ss_pred eEcCCCCEEEEeccCCCCC--CcccCCeEEEecc-hhHHHH-HHHHHHHHHhhCCeEEEeccccccccCCCCChhhcch-
Confidence 4457899999998888874 4567899999987 565554 477788899999999999986432211 1 11111
Q ss_pred ccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccC---C-CCC
Q 006375 457 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD---P-TIP 532 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~---~-~~~ 532 (648)
....+|+..+++||...|. .+++++..|.-|-+|...+++ ++ ..-+|..+|++|+..+... . -+.
T Consensus 82 ------s~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVGVVnlr~TLe~al~~Dyl~ 150 (294)
T PF02273_consen 82 ------SIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAAD-IN-LSFLITAVGVVNLRDTLEKALGYDYLQ 150 (294)
T ss_dssp ------HHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGG
T ss_pred ------HHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhc-cC-cceEEEEeeeeeHHHHHHHHhccchhh
Confidence 0123789999999998774 689999999999999999994 54 6778888899997654310 0 000
Q ss_pred CCccccc---cc-CCCCCHHHH--HHH-HcCCc----cccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCC
Q 006375 533 LTTAEWE---EW-GDPWKEEFY--FYM-KSYSP----VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN 601 (648)
Q Consensus 533 ~~~~~~~---~~-g~~~~~~~~--~~~-~~~sp----~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~ 601 (648)
+...+.. ++ |---+.+.| ..+ ..+.+ ...++..++| ++..++.+|.-|...+..++...+... .++
T Consensus 151 ~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP-~iaF~A~~D~WV~q~eV~~~~~~~~s~--~~k 227 (294)
T PF02273_consen 151 LPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIP-FIAFTANDDDWVKQSEVEELLDNINSN--KCK 227 (294)
T ss_dssp S-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S--EEEEEETT-TTS-HHHHHHHHTT-TT----EE
T ss_pred cchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCC-EEEEEeCCCccccHHHHHHHHHhcCCC--cee
Confidence 0000000 00 110011111 011 12222 3457777898 999999999988877666665554432 222
Q ss_pred eEEEEecCCCCccCCC
Q 006375 602 ILLFKCELGAGHFSKS 617 (648)
Q Consensus 602 ~~~~~~~~~~gH~~~~ 617 (648)
+..+ .|+.|--..
T Consensus 228 lysl---~Gs~HdL~e 240 (294)
T PF02273_consen 228 LYSL---PGSSHDLGE 240 (294)
T ss_dssp EEEE---TT-SS-TTS
T ss_pred EEEe---cCccchhhh
Confidence 3333 399995543
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00088 Score=69.25 Aligned_cols=258 Identities=17% Similarity=0.159 Sum_probs=124.8
Q ss_pred eeEEeCCCCCEEEEEEeCC-CCeEEEEEEEECCCCCeeec-cc--cC-ccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 84 GCFQVSPDNKLVAYAEDTK-GDEIYTVYVIDIETGTPVGK-PL--VG-VTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~-G~e~~~l~v~dl~~g~~~~~-~~--~~-~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
+.+.+||++++|..+.... .......+-++-++|+.... .. .+ .-..++.+||+ .++...+. ...|..++
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~----~g~v~v~~ 115 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG----GGSVSVFP 115 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT----TTEEEEEE
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc----CCeEEEEE
Confidence 4677899998765444321 22244455555555655422 11 22 12337778999 55444332 23466777
Q ss_pred CCCCCCCcEE--EEe----ec-----CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeE---ee-ecccc
Q 006375 158 LEADQSNDIC--LYH----EK-----DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRV---LT-PRVVG 221 (648)
Q Consensus 158 l~~~~~~~~~--~~~----~~-----~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~---l~-~~~~~ 221 (648)
+.....-... ++. .. .......+.++|||+++++... +...|++++++... .+.. +. +...+
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl--G~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL--GADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET--TTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec--CCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 7654211111 111 11 1123345788999999987543 44567777776543 1322 11 11112
Q ss_pred -eeeeEeecCCEEEEEeccCCCCCcEEEEEeCC--CCCccee-----EecCCCC--cccceEEEeCCEEEEEEecCCeeE
Q 006375 222 -VDTAASHRGNHFFITRRSDELFNSELLACPVD--NTSETTV-----LIPHRES--VKLQDIQLFIDHLAVYEREGGLQK 291 (648)
Q Consensus 222 -~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~-----~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~ 291 (648)
....++|+|+.+|++... . ..|..++++ . +..+. .++.... ....++.+.+|+-+++..+.+...
T Consensus 194 PRh~~f~pdg~~~Yv~~e~--s--~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNEL--S--NTVSVFDYDPSD-GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp EEEEEE-TTSSEEEEEETT--T--TEEEEEEEETTT-TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred CcEEEEcCCcCEEEEecCC--C--CcEEEEeecccC-CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 235699999988777554 2 244444443 3 22221 2222111 123445555443333334445678
Q ss_pred EEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEE
Q 006375 292 ITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV 358 (648)
Q Consensus 292 l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 358 (648)
|.+++++..++.+..+ ..+..... .-..+..+++++.+++ ......--.+|+.|.++|++.
T Consensus 269 I~vf~~d~~~g~l~~~---~~~~~~G~--~Pr~~~~s~~g~~l~V-a~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLV---QTVPTGGK--FPRHFAFSPDGRYLYV-ANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEEECTTTTTEEEE---EEEEESSS--SEEEEEE-TTSSEEEE-EETTTTEEEEEEEETTTTEEE
T ss_pred EEEEEEecCCCceEEE---EEEeCCCC--CccEEEEeCCCCEEEE-EecCCCeEEEEEEeCCCCcEE
Confidence 8999996544444321 11111000 0112445677775554 333334456778888899844
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.5e-06 Score=78.54 Aligned_cols=191 Identities=12% Similarity=0.014 Sum_probs=109.6
Q ss_pred eEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHC----CCEEEEEccCCCCCCChhhhhcccccCC
Q 006375 387 TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR----GFIFAIAQIRGGGELGRQWYENGKFLKK 462 (648)
Q Consensus 387 ~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~----G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 462 (648)
.+....++.|++. ....|+|+++..||-....... -......|+.. .-+++.+|+----.....++
T Consensus 80 ~~~~~vv~lppgy-~~~~k~pvl~~~DG~~~~~~g~-i~~~~dsli~~g~i~pai~vgid~~d~~~R~~~~~-------- 149 (299)
T COG2382 80 SERRRVVYLPPGY-NPLEKYPVLYLQDGQDWFRSGR-IPRILDSLIAAGEIPPAILVGIDYIDVKKRREELH-------- 149 (299)
T ss_pred cceeEEEEeCCCC-CccccccEEEEeccHHHHhcCC-hHHHHHHHHHcCCCCCceEEecCCCCHHHHHHHhc--------
Confidence 3455566788887 6678899999999843222211 11122345543 56777777632111111111
Q ss_pred CCcHhHHHH-----HHHHHHHcC--CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCc
Q 006375 463 KNTFTDFIA-----CAEYLIKNC--YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTT 535 (648)
Q Consensus 463 ~~~~~D~~~-----~~~~l~~~~--~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 535 (648)
..+++.. .+=++.+.. .-++++-+++|.|+||..+++++.++|+.|..+++.+|.++..-.. ..
T Consensus 150 --~n~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~---~~---- 220 (299)
T COG2382 150 --CNEAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLD---TQ---- 220 (299)
T ss_pred --ccHHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCccc---cc----
Confidence 1122221 122333332 2367889999999999999999999999999999999987643110 00
Q ss_pred ccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccC
Q 006375 536 AEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 615 (648)
Q Consensus 536 ~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~ 615 (648)
.++. .. ...+-++-+..... -++...++.+...++ .+.+.+.|+..+.+...-.| .+||-.
T Consensus 221 ---~~~~------~~---~~l~~~~a~~~~~~-~~l~~g~~~~~~~~p--Nr~L~~~L~~~g~~~~yre~----~GgHdw 281 (299)
T COG2382 221 ---PQGE------VA---ESLKILHAIGTDER-IVLTTGGEEGDFLRP--NRALAAQLEKKGIPYYYREY----PGGHDW 281 (299)
T ss_pred ---cccc------hh---hhhhhhhccCccce-EEeecCCccccccch--hHHHHHHHHhcCCcceeeec----CCCCch
Confidence 1110 11 11112222222222 367777777776654 57788999998887643334 349943
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.7e-06 Score=78.54 Aligned_cols=134 Identities=20% Similarity=0.199 Sum_probs=97.3
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCch-hHHHHHHCCCEEEEEccCCCCCC-Chhhh
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS-SRLSLLDRGFIFAIAQIRGGGEL-GRQWY 454 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~G~~v~~~~~rG~g~~-g~~~~ 454 (648)
.+.++.+.||.+|...++-.+.. ...+..-+|++.-|..|. |.. .+..=++.||.|+..|.+|-+|. |-.
T Consensus 215 ~R~kiks~dgneiDtmF~d~r~n-~~~ngq~LvIC~EGNAGF-----YEvG~m~tP~~lgYsvLGwNhPGFagSTG~P-- 286 (517)
T KOG1553|consen 215 QRLKIKSSDGNEIDTMFLDGRPN-QSGNGQDLVICFEGNAGF-----YEVGVMNTPAQLGYSVLGWNHPGFAGSTGLP-- 286 (517)
T ss_pred eEEEEeecCCcchhheeecCCCC-CCCCCceEEEEecCCccc-----eEeeeecChHHhCceeeccCCCCccccCCCC--
Confidence 67889999999998876655433 222224577777774331 111 12233567999999999985543 332
Q ss_pred hcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccc
Q 006375 455 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 525 (648)
Q Consensus 455 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~ 525 (648)
...|+..-+.++++|.+..-...++.|.++|+|.||+-++++|..+|| ++|+|+.+-|-|++..
T Consensus 287 ------~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpL 350 (517)
T KOG1553|consen 287 ------YPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPL 350 (517)
T ss_pred ------CcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhH
Confidence 234666778889999887755678999999999999999999999997 8999999998886643
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.6e-05 Score=75.38 Aligned_cols=194 Identities=17% Similarity=0.088 Sum_probs=110.3
Q ss_pred CCCceEEEeccccc-----CCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec---cccCccceeEE
Q 006375 62 APPEHLILDENVKA-----EGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEW 133 (648)
Q Consensus 62 ~~~~~~lld~n~~~-----~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~---~~~~~~~~~~W 133 (648)
.++...|.+.+... ++|+ .++...+|.|+|++|+=++- ..+.++||+.+++.+.. ...++ .+++|
T Consensus 239 ~Dgtvklw~~~~e~~l~~l~gH~-~RVs~VafHPsG~~L~Tasf-----D~tWRlWD~~tk~ElL~QEGHs~~v-~~iaf 311 (459)
T KOG0272|consen 239 ADGTVKLWKLSQETPLQDLEGHL-ARVSRVAFHPSGKFLGTASF-----DSTWRLWDLETKSELLLQEGHSKGV-FSIAF 311 (459)
T ss_pred cCCceeeeccCCCcchhhhhcch-hhheeeeecCCCceeeeccc-----ccchhhcccccchhhHhhccccccc-ceeEe
Confidence 34556666665532 2343 78899999999999986543 45789999999886632 22333 45999
Q ss_pred ecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCcee
Q 006375 134 AGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR 213 (648)
Q Consensus 134 spDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~ 213 (648)
.|||.++-+..-+. .. ..+|+.++ .-.+++.++ -.-.+++.|||+|-.|+ +.+..+..+ ++||......-
T Consensus 312 ~~DGSL~~tGGlD~--~~--RvWDlRtg--r~im~L~gH-~k~I~~V~fsPNGy~lA-Tgs~Dnt~k--VWDLR~r~~ly 381 (459)
T KOG0272|consen 312 QPDGSLAATGGLDS--LG--RVWDLRTG--RCIMFLAGH-IKEILSVAFSPNGYHLA-TGSSDNTCK--VWDLRMRSELY 381 (459)
T ss_pred cCCCceeeccCccc--hh--heeecccC--cEEEEeccc-ccceeeEeECCCceEEe-ecCCCCcEE--Eeeecccccce
Confidence 99998876654221 12 24567777 445666554 33455899999997665 333333344 44555443112
Q ss_pred Eeeecccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC
Q 006375 214 VLTPRVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID 278 (648)
Q Consensus 214 ~l~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (648)
.+.....- ...-++|+++.++.+...+. ..+|+... +....+.+..|... +.+++...|
T Consensus 382 ~ipAH~nlVS~Vk~~p~~g~fL~TasyD~--t~kiWs~~--~~~~~ksLaGHe~k--V~s~Dis~d 441 (459)
T KOG0272|consen 382 TIPAHSNLVSQVKYSPQEGYFLVTASYDN--TVKIWSTR--TWSPLKSLAGHEGK--VISLDISPD 441 (459)
T ss_pred ecccccchhhheEecccCCeEEEEcccCc--ceeeecCC--CcccchhhcCCccc--eEEEEeccC
Confidence 22212111 12347887776666655532 34555422 22222224445444 445555444
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.5e-05 Score=76.12 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=65.0
Q ss_pred CCCcEEEE----ecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc
Q 006375 404 GSDPLLLY----GYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479 (648)
Q Consensus 404 ~~~P~vl~----~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 479 (648)
.|.|.||. +|| +|...-.. ..+.-..+..|.-|..+-+.-..+- ..++.|+..+....+++
T Consensus 67 ~krP~vViDPRAGHG-pGIGGFK~-dSevG~AL~~GHPvYFV~F~p~P~p-------------gQTl~DV~~ae~~Fv~~ 131 (581)
T PF11339_consen 67 TKRPFVVIDPRAGHG-PGIGGFKP-DSEVGVALRAGHPVYFVGFFPEPEP-------------GQTLEDVMRAEAAFVEE 131 (581)
T ss_pred CCCCeEEeCCCCCCC-CCccCCCc-ccHHHHHHHcCCCeEEEEecCCCCC-------------CCcHHHHHHHHHHHHHH
Confidence 45777775 566 33333222 3334445567998888877633332 24667877665544332
Q ss_pred ---CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEE-ecCCc
Q 006375 480 ---CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAV-AAVPF 519 (648)
Q Consensus 480 ---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v-~~~~~ 519 (648)
-.-+..|..++|.+.||.+++.+++.+|+++.-+| +.+|+
T Consensus 132 V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPl 175 (581)
T PF11339_consen 132 VAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPL 175 (581)
T ss_pred HHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCc
Confidence 11233499999999999999999999999988554 55554
|
Their function is unknown. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00055 Score=73.58 Aligned_cols=199 Identities=9% Similarity=0.005 Sum_probs=110.6
Q ss_pred EEeeEEeCC-CCCEEEEEEeCCCCeEEEEEEEECCCCCee------ecccc---CccceeEEecCC-eEEEEEeCCCCCC
Q 006375 82 SVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPV------GKPLV---GVTASVEWAGNE-ALVYITMDEILRP 150 (648)
Q Consensus 82 ~~~~~~~SP-DG~~la~~~~~~G~e~~~l~v~dl~~g~~~------~~~~~---~~~~~~~WspDg-~l~y~~~~~~~~~ 150 (648)
.+..+.||| |+++||-... + .+|.+||+.++... ...+. .....++|+|++ .++.+... .
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~-D----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~----D 147 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASE-D----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA----D 147 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeC-C----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC----C
Confidence 577889999 8888775543 3 37999999765321 01122 124459999997 66666542 2
Q ss_pred ceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc--eeeeEee
Q 006375 151 DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG--VDTAASH 228 (648)
Q Consensus 151 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~--~~~~~s~ 228 (648)
..|.++++.++ +....+... ......+.|+|||+.|+..+. +..|.++|+.+++....+...... ....|.+
T Consensus 148 gtVrIWDl~tg--~~~~~l~~h-~~~V~sla~spdG~lLatgs~---Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 148 MVVNVWDVERG--KAVEVIKCH-SDQITSLEWNLDGSLLCTTSK---DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred CEEEEEECCCC--eEEEEEcCC-CCceEEEEEECCCCEEEEecC---CCEEEEEECCCCcEEEEEecCCCCcceEEEEcC
Confidence 34888888876 233333322 233557899999998765432 456889999887622223222221 2345778
Q ss_pred cCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCC--CcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 229 RGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE--SVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 229 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
+++.|+..... ...+..|...|+.............. ...+..++.+++.+++....+ ..+++|++.
T Consensus 222 ~~~~ivt~G~s-~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD--g~Iriwdl~ 290 (493)
T PTZ00421 222 RKDLIITLGCS-KSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE--GNIRCFELM 290 (493)
T ss_pred CCCeEEEEecC-CCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC--CeEEEEEee
Confidence 77765544322 22345788888865332211221111 111222333444444443323 457777776
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.6e-05 Score=66.27 Aligned_cols=123 Identities=17% Similarity=0.245 Sum_probs=85.1
Q ss_pred cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCccccc
Q 006375 460 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 539 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 539 (648)
.+....++|-++.++.-+..- ++.+.+++||.|+.+++..+.+....++++.+.+|+ |.-+...
T Consensus 37 ~w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVApp-d~~~~~~------------ 100 (181)
T COG3545 37 DWEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPP-DVSRPEI------------ 100 (181)
T ss_pred CCCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCC-Ccccccc------------
Confidence 455567889888888766542 466999999999999999988876678999998885 3322110
Q ss_pred ccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC
Q 006375 540 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS 617 (648)
Q Consensus 540 ~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~ 617 (648)
.+ ..+..++|+... +.-.| .+++++.+|+.|+++++..+.+++-.. ++..- .+||.+..
T Consensus 101 ------~~---~~~~tf~~~p~~-~lpfp-s~vvaSrnDp~~~~~~a~~~a~~wgs~-----lv~~g---~~GHiN~~ 159 (181)
T COG3545 101 ------RP---KHLMTFDPIPRE-PLPFP-SVVVASRNDPYVSYEHAEDLANAWGSA-----LVDVG---EGGHINAE 159 (181)
T ss_pred ------ch---hhccccCCCccc-cCCCc-eeEEEecCCCCCCHHHHHHHHHhccHh-----heecc---cccccchh
Confidence 00 112345555433 33556 999999999999999999998887543 33332 67886543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0016 Score=66.16 Aligned_cols=239 Identities=13% Similarity=0.113 Sum_probs=115.8
Q ss_pred EeCCCCCEEEEEEe-----CCCCeEEEEEEEECCCCCeeec-cccC--------ccceeEEecCCeEEEEEeCCCCCCce
Q 006375 87 QVSPDNKLVAYAED-----TKGDEIYTVYVIDIETGTPVGK-PLVG--------VTASVEWAGNEALVYITMDEILRPDK 152 (648)
Q Consensus 87 ~~SPDG~~la~~~~-----~~G~e~~~l~v~dl~~g~~~~~-~~~~--------~~~~~~WspDg~l~y~~~~~~~~~~~ 152 (648)
.+||||+.|..... ..|.+.-.|-|+|+++++.+.. .++. ....++.||||+.+|+.. ......
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n--~~p~~~ 129 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ--FSPSPA 129 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec--CCCCCE
Confidence 49999999877755 1233345899999999987742 2211 123589999994444432 111345
Q ss_pred EEEEECCCCCCCcEEEEeecCCCeEEE------EEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc---cee
Q 006375 153 AWLHKLEADQSNDICLYHEKDDIYSLG------LQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV---GVD 223 (648)
Q Consensus 153 l~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~---~~~ 223 (648)
|-.+|+.++. -......++....+- .....||+.+.+.....+... .. ...+..... ...
T Consensus 130 V~VvD~~~~k--vv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~--~~-------~~~vf~~~~~~v~~r 198 (352)
T TIGR02658 130 VGVVDLEGKA--FVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK--IK-------PTEVFHPEDEYLINH 198 (352)
T ss_pred EEEEECCCCc--EEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceE--Ee-------eeeeecCCccccccC
Confidence 7788887652 111111121111100 012344444444333222211 00 111111100 011
Q ss_pred eeEee-cCCEEEEEeccCCCCCcEEEEEeCCCCCc---cee-EecCCC---Ccc-----cceEEEeCCEEEEEEec----
Q 006375 224 TAASH-RGNHFFITRRSDELFNSELLACPVDNTSE---TTV-LIPHRE---SVK-----LQDIQLFIDHLAVYERE---- 286 (648)
Q Consensus 224 ~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~~~~~---~~~-~~~~~~---~~~-----~~~~~~~~~~l~~~~~~---- 286 (648)
..+++ || ..+|.++. ..|+.+|+.+.+. ..| +++..+ +.. ...+..+++++++....
T Consensus 199 P~~~~~dg-~~~~vs~e-----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~ 272 (352)
T TIGR02658 199 PAYSNKSG-RLVWPTYT-----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW 272 (352)
T ss_pred CceEcCCC-cEEEEecC-----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence 12356 55 46677665 4799999754221 223 322111 112 22333345566664421
Q ss_pred ---CCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 287 ---GGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 287 ---~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
++..++++++..+ ++.+ ..+..... ..++..++|+.-++|..+. ....+..+|..+++
T Consensus 273 thk~~~~~V~ViD~~t-~kvi------~~i~vG~~---~~~iavS~Dgkp~lyvtn~--~s~~VsViD~~t~k 333 (352)
T TIGR02658 273 THKTASRFLFVVDAKT-GKRL------RKIELGHE---IDSINVSQDAKPLLYALST--GDKTLYIFDAETGK 333 (352)
T ss_pred cccCCCCEEEEEECCC-CeEE------EEEeCCCc---eeeEEECCCCCeEEEEeCC--CCCcEEEEECcCCe
Confidence 2235889988764 2222 23333222 2234556777734444332 24558899998887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00056 Score=70.37 Aligned_cols=201 Identities=12% Similarity=0.154 Sum_probs=101.3
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC-CCee--eccccC--ccceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPV--GKPLVG--VTASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~-g~~~--~~~~~~--~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
..+.++|||++|..+.... ..|.++++++ |... ...+.+ ....++++|||+.+|+.. .....|+.+++
T Consensus 83 ~~i~~~~~g~~l~v~~~~~----~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~---~~~~~v~v~d~ 155 (330)
T PRK11028 83 THISTDHQGRFLFSASYNA----NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC---LKEDRIRLFTL 155 (330)
T ss_pred eEEEECCCCCEEEEEEcCC----CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee---CCCCEEEEEEE
Confidence 4688999999876664433 3678888864 3221 111222 123478999994445443 22345888888
Q ss_pred CCCCCCc---EEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECC--CCCceeEeee-----c-ccc----ee
Q 006375 159 EADQSND---ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS--KPEELRVLTP-----R-VVG----VD 223 (648)
Q Consensus 159 ~~~~~~~---~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~--~~~~~~~l~~-----~-~~~----~~ 223 (648)
.+...-. ...........-..+.++|||+++++... ..+.|.+++++ +++ .+.+.. . ..+ ..
T Consensus 156 ~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~--~~~~v~v~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE--LNSSVDVWQLKDPHGE-IECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred CCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec--CCCEEEEEEEeCCCCC-EEEEEEEecCCCcCCCCcccee
Confidence 6531100 00011000111124578999999987533 34666666665 333 322211 1 011 12
Q ss_pred eeEeecCCEEEEEeccCCCCCcEEEEEeCCCCC-ccee--EecCCCCcccceEEE--eCCEEEEEEecCCeeEEEEEEcC
Q 006375 224 TAASHRGNHFFITRRSDELFNSELLACPVDNTS-ETTV--LIPHRESVKLQDIQL--FIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 224 ~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
..++|+|++||.. ++. . ..|.+++++..+ ..+. .++... ....+.+ +++++++... +...+.++.++
T Consensus 233 i~~~pdg~~lyv~-~~~-~--~~I~v~~i~~~~~~~~~~~~~~~~~--~p~~~~~~~dg~~l~va~~--~~~~v~v~~~~ 304 (330)
T PRK11028 233 IHITPDGRHLYAC-DRT-A--SLISVFSVSEDGSVLSFEGHQPTET--QPRGFNIDHSGKYLIAAGQ--KSHHISVYEID 304 (330)
T ss_pred EEECCCCCEEEEe-cCC-C--CeEEEEEEeCCCCeEEEeEEEeccc--cCCceEECCCCCEEEEEEc--cCCcEEEEEEc
Confidence 4578999977664 542 2 245555553212 1121 222111 2334444 4556665543 33567777776
Q ss_pred CCCC
Q 006375 299 AVGE 302 (648)
Q Consensus 299 ~~g~ 302 (648)
...+
T Consensus 305 ~~~g 308 (330)
T PRK11028 305 GETG 308 (330)
T ss_pred CCCC
Confidence 4333
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00025 Score=75.29 Aligned_cols=197 Identities=15% Similarity=0.118 Sum_probs=122.2
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc-cCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
+.++..+..||||++||=. .|...|.|||..+|-=..+ +- ......+.|+.+| .++-.+.|.. |..+
T Consensus 350 ~~~i~~l~YSpDgq~iaTG-----~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt-----VRAw 419 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATG-----AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT-----VRAW 419 (893)
T ss_pred ccceeeEEECCCCcEEEec-----cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe-----EEee
Confidence 6788999999999999854 4455899999988764332 11 1224569999999 5555554433 5666
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEeecCCEEEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFI 235 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~ 235 (648)
|+... .--..|+.+.+.-+.-++..|.|.-+. +...+.-+|++++.++|+.+..|..++..+. ..++|+|..|+-
T Consensus 420 DlkRY--rNfRTft~P~p~QfscvavD~sGelV~--AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 420 DLKRY--RNFRTFTSPEPIQFSCVAVDPSGELVC--AGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred eeccc--ceeeeecCCCceeeeEEEEcCCCCEEE--eeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 66544 233455556565555667777786544 4666778999999999983333444444333 469999998776
Q ss_pred EeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 236 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
.+.+. ..+++-+=-+....+ .++...++.-..|.++++.+.+...+ .+|.+++..
T Consensus 496 ~SWDk---TVRiW~if~s~~~vE--tl~i~sdvl~vsfrPdG~elaVaTld---gqItf~d~~ 550 (893)
T KOG0291|consen 496 GSWDK---TVRIWDIFSSSGTVE--TLEIRSDVLAVSFRPDGKELAVATLD---GQITFFDIK 550 (893)
T ss_pred ccccc---eEEEEEeeccCceee--eEeeccceeEEEEcCCCCeEEEEEec---ceEEEEEhh
Confidence 66641 234433222221122 23333344455677778888777665 256666654
|
|
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.6e-05 Score=67.78 Aligned_cols=126 Identities=19% Similarity=0.228 Sum_probs=82.5
Q ss_pred cHhH-HHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh---------CCCceeEEEecCCcccccccccCCCCCCC
Q 006375 465 TFTD-FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM---------RPDLFKAAVAAVPFVDVLTTMLDPTIPLT 534 (648)
Q Consensus 465 ~~~D-~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~---------~p~~~~a~v~~~~~~d~~~~~~~~~~~~~ 534 (648)
.++. +....+|+.++|.-| +|.|+|.|+.|++.+++. .| .|+-+|..+|+.-.
T Consensus 87 ~~eesl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P-~~kF~v~~SGf~~~------------ 149 (230)
T KOG2551|consen 87 GFEESLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQP-PFKFAVFISGFKFP------------ 149 (230)
T ss_pred ChHHHHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCC-CeEEEEEEecCCCC------------
Confidence 4444 556667788888765 799999999999988882 12 35667777665321
Q ss_pred cccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCcc
Q 006375 535 TAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHF 614 (648)
Q Consensus 535 ~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~ 614 (648)
+.+.+.. .....+++| .|-+.|+.|..||...+..+++....+ .++.. .+||+
T Consensus 150 -------~~~~~~~-----------~~~~~i~~P-SLHi~G~~D~iv~~~~s~~L~~~~~~a-----~vl~H---pggH~ 202 (230)
T KOG2551|consen 150 -------SKKLDES-----------AYKRPLSTP-SLHIFGETDTIVPSERSEQLAESFKDA-----TVLEH---PGGHI 202 (230)
T ss_pred -------cchhhhh-----------hhccCCCCC-eeEEecccceeecchHHHHHHHhcCCC-----eEEec---CCCcc
Confidence 0000111 113356788 999999999999999999999888754 23333 57998
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcC
Q 006375 615 SKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 615 ~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
..... ...+. +.+|+...+.
T Consensus 203 VP~~~-~~~~~---i~~fi~~~~~ 222 (230)
T KOG2551|consen 203 VPNKA-KYKEK---IADFIQSFLQ 222 (230)
T ss_pred CCCch-HHHHH---HHHHHHHHHH
Confidence 76654 33333 3566655443
|
|
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.6e-05 Score=80.17 Aligned_cols=238 Identities=18% Similarity=0.177 Sum_probs=118.5
Q ss_pred eEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcH
Q 006375 387 TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF 466 (648)
Q Consensus 387 ~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~ 466 (648)
..+.+.+..|++. ...++.|+++..||........ ......++..++.++..+....++.+-.-+ |. .......
T Consensus 31 ~~~~~~l~~p~~~-~~~~~~p~v~~~h~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--g~-~~~~~~~ 104 (299)
T COG1073 31 IALAAVLHLPPSG-NEEKKLPAVVFLHGFGSSKEQS--LGYAVLLAEKGYRVLAGDASLFGESGGDPR--GL-ADSEGYA 104 (299)
T ss_pred ceeeeEEEecCCC-CccccCceEEeccCccccccCc--chHHHHhhhceeEEeeeccccccccccccc--cc-cCccccc
Confidence 5577787888765 3336799999999954433221 124667778888877776411111111100 00 0000000
Q ss_pred hHHHHHHHHHHH---------cCCCCCCeEEEEeeChhHHHHHHHHhhCCC---ceeEEEecCCccccccccc-------
Q 006375 467 TDFIACAEYLIK---------NCYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAVPFVDVLTTML------- 527 (648)
Q Consensus 467 ~D~~~~~~~l~~---------~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~~~a~v~~~~~~d~~~~~~------- 527 (648)
.++......... ......++....|.+.||..+..++...+. ..+.++...+.-.......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~~~ 184 (299)
T COG1073 105 EDFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPEL 184 (299)
T ss_pred cccchhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccchHH
Confidence 111111111000 011123677778888887777776666542 2222222211110000000
Q ss_pred -CCCCCC--Cccccccc-CCC-----CCHHHHHHHHcCCccccCCCCC-CCeEEEeecCCCCccCCchHHHHHHHHHhcC
Q 006375 528 -DPTIPL--TTAEWEEW-GDP-----WKEEFYFYMKSYSPVDNVKAQN-YPHILVTAGLNDPRVMYSEPAKFVAKLREMK 597 (648)
Q Consensus 528 -~~~~~~--~~~~~~~~-g~~-----~~~~~~~~~~~~sp~~~~~~~~-~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~ 597 (648)
....+. ....+... ..+ .... ...+..+++...+.++. .| +|++||.+|..||..++.+++.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~i~~~P-~l~~~G~~D~~vp~~~~~~~~~~~~~~- 261 (299)
T COG1073 185 ARELIDYLITPGGFAPLPAPEAPLDTLPLR-AVLLLLLDPFDDAEKISPRP-VLLVHGERDEVVPLRDAEDLYEAARER- 261 (299)
T ss_pred HHhhhhhhccCCCCCCCCcccccccccccc-hhhhccCcchhhHhhcCCcc-eEEEecCCCcccchhhhHHHHhhhccC-
Confidence 000000 00000000 000 0011 12245566777777775 67 999999999999999999999998865
Q ss_pred CCCCeEEEEecCCCCccCCC-chHHHHHHHHHHHHHHHHhc
Q 006375 598 TDDNILLFKCELGAGHFSKS-GRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 598 ~~~~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~~~fl~~~l 637 (648)
+.+.++++ +++|.... ......+...++..||.++|
T Consensus 262 -~~~~~~~~---~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 262 -PKKLLFVP---GGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred -CceEEEec---CCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 44444554 66796653 22221233446678988875
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.1e-06 Score=79.90 Aligned_cols=171 Identities=18% Similarity=0.171 Sum_probs=77.9
Q ss_pred CCcEEEEecCCCCCCCCCCCchhH---HHHHHC-CCEEEEEccCCCC--------------------CCChhhhhccccc
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSR---LSLLDR-GFIFAIAQIRGGG--------------------ELGRQWYENGKFL 460 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~---~~l~~~-G~~v~~~~~rG~g--------------------~~g~~~~~~~~~~ 460 (648)
+.+-||++||...+. .-|.... ...+.. ++.++.+|-+--- +....|......
T Consensus 3 ~k~riLcLHG~~~na--~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~- 79 (212)
T PF03959_consen 3 RKPRILCLHGYGQNA--EIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDD- 79 (212)
T ss_dssp ---EEEEE--TT--H--HHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S--
T ss_pred CCceEEEeCCCCcCH--HHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCC-
Confidence 357899999954332 1233222 233334 7888888753111 122233322111
Q ss_pred CCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC--------CCceeEEEecCCcccccccccCCCCC
Q 006375 461 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR--------PDLFKAAVAAVPFVDVLTTMLDPTIP 532 (648)
Q Consensus 461 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~--------p~~~~a~v~~~~~~d~~~~~~~~~~~ 532 (648)
.....++..++++|.+.-.-+.--.+|+|+|.||.+|+.++.+. ...|+.+|+.+++.-....
T Consensus 80 --~~~~~~~~~sl~~l~~~i~~~GPfdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------- 150 (212)
T PF03959_consen 80 --DHEYEGLDESLDYLRDYIEENGPFDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------- 150 (212)
T ss_dssp --SGGG---HHHHHHHHHHHHHH---SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE--------
T ss_pred --cccccCHHHHHHHHHHHHHhcCCeEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh-------
Confidence 23355566666665442100112479999999999998777531 1247888888876432110
Q ss_pred CCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCC
Q 006375 533 LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 612 (648)
Q Consensus 533 ~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g 612 (648)
+.+...-.++++| +|-++|.+|..+++..++++++..... . .++.. .+|
T Consensus 151 -----------------------~~~~~~~~~i~iP-tlHv~G~~D~~~~~~~s~~L~~~~~~~---~--~v~~h--~gG 199 (212)
T PF03959_consen 151 -----------------------YQELYDEPKISIP-TLHVIGENDPVVPPERSEALAEMFDPD---A--RVIEH--DGG 199 (212)
T ss_dssp -----------------------GTTTT--TT---E-EEEEEETT-SSS-HHHHHHHHHHHHHH---E--EEEEE--SSS
T ss_pred -----------------------hhhhhccccCCCC-eEEEEeCCCCCcchHHHHHHHHhccCC---c--EEEEE--CCC
Confidence 0010012344677 999999999999999999999888764 1 23332 678
Q ss_pred ccCCCc
Q 006375 613 HFSKSG 618 (648)
Q Consensus 613 H~~~~~ 618 (648)
|.....
T Consensus 200 H~vP~~ 205 (212)
T PF03959_consen 200 HHVPRK 205 (212)
T ss_dssp SS----
T ss_pred CcCcCC
Confidence 976543
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00039 Score=70.86 Aligned_cols=194 Identities=17% Similarity=0.249 Sum_probs=112.0
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-----cccCccceeEEecCC-eEEEEEeCCCCCCceEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-----PLVGVTASVEWAGNE-ALVYITMDEILRPDKAW 154 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-----~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~ 154 (648)
-.+...++||||.+.|=+.. .-.++++|=++|+.+-. .-.+....++||||+ +|+-.+.+ ...+||
T Consensus 191 kFV~~VRysPDG~~Fat~gs-----Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD---kt~KIW 262 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGS-----DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD---KTIKIW 262 (603)
T ss_pred cceeeEEECCCCCeEEEecC-----CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC---ceEEEE
Confidence 35678999999999875532 23799999999987732 112223459999999 87655443 334444
Q ss_pred EEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEeecCCEE
Q 006375 155 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHF 233 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~dg~~l 233 (648)
++.+..-..+......-....++.-|..| .|+-.+.+ + -|-.++.+....++.+......+. ..+++||++|
T Consensus 263 --dVs~~slv~t~~~~~~v~dqqvG~lWqkd--~lItVSl~-G--~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 263 --DVSTNSLVSTWPMGSTVEDQQVGCLWQKD--HLITVSLS-G--TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI 335 (603)
T ss_pred --EeeccceEEEeecCCchhceEEEEEEeCC--eEEEEEcC-c--EEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence 44444222222332222345667788844 23322222 2 344556665553444555544544 4689999877
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC-CEEEEEEecCCeeEEEEEEcC
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI-DHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~v~~~~ 298 (648)
|-.+.+ ++|...+...+...+ +++.....++..+.... +.++-...++ .|++.++.
T Consensus 336 ~SgsyD-----G~I~~W~~~~g~~~~-~~g~~h~nqI~~~~~~~~~~~~t~g~Dd---~l~~~~~~ 392 (603)
T KOG0318|consen 336 YSGSYD-----GHINSWDSGSGTSDR-LAGKGHTNQIKGMAASESGELFTIGWDD---TLRVISLK 392 (603)
T ss_pred EeeccC-----ceEEEEecCCccccc-cccccccceEEEEeecCCCcEEEEecCC---eEEEEecc
Confidence 544332 578888876532222 55444455677777766 5555555554 45555553
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00086 Score=68.05 Aligned_cols=193 Identities=13% Similarity=0.142 Sum_probs=101.8
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEE--------ecCCeEEEEEeCCCCCCceEEE
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEW--------AGNEALVYITMDEILRPDKAWL 155 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~W--------spDg~l~y~~~~~~~~~~~l~~ 155 (648)
.+.+|||||+|.+. +.+. ...+-|+|+++++.+.. ..++...-+.+ ..||.++..+.+..+. +..
T Consensus 109 ~~~ls~dgk~l~V~-n~~p--~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~---~~~ 182 (352)
T TIGR02658 109 MTSLTPDNKTLLFY-QFSP--SPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN---PKI 182 (352)
T ss_pred eEEECCCCCEEEEe-cCCC--CCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc---eEE
Confidence 78899999987654 3222 34799999999997742 33433222333 4555333333322221 111
Q ss_pred EECCCCCCCcEEEEee-cCCCeEEEEEeCC-CCcEEEEEEccccccEEEEEECCCCC-----ceeEeeec-------ccc
Q 006375 156 HKLEADQSNDICLYHE-KDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPE-----ELRVLTPR-------VVG 221 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~dl~~~~-----~~~~l~~~-------~~~ 221 (648)
....+|.. .++.+ ..+.+++ ||++++++.. ..|+.+|+.+.+ .+..++.. ..+
T Consensus 183 --------~~~~vf~~~~~~v~-~rP~~~~~dg~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g 249 (352)
T TIGR02658 183 --------KPTEVFHPEDEYLI-NHPAYSNKSGRLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG 249 (352)
T ss_pred --------eeeeeecCCccccc-cCCceEcCCCcEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence 11122221 11111 1222345 8988877544 789999976654 12222211 111
Q ss_pred ee-eeEeecCCEEEEEeccCC-----CCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEE-EEEEecCCeeEEEE
Q 006375 222 VD-TAASHRGNHFFITRRSDE-----LFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHL-AVYEREGGLQKITT 294 (648)
Q Consensus 222 ~~-~~~s~dg~~l~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~l~v 294 (648)
.+ ..++++|+.+|+..+... .+..+|.++|..+..... .++-.. ...++.+++|.- .++..+.....+.+
T Consensus 250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~-~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR-KIELGH--EIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE-EEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 11 458899999998654311 122489999987633222 333322 245566666533 34444444556888
Q ss_pred EEcCC
Q 006375 295 YRLPA 299 (648)
Q Consensus 295 ~~~~~ 299 (648)
++...
T Consensus 327 iD~~t 331 (352)
T TIGR02658 327 FDAET 331 (352)
T ss_pred EECcC
Confidence 88763
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00098 Score=71.56 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=97.4
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC-CCeeeccccC---ccceeEEecCCeEEEEEeCCCCCCceEEE
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWL 155 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~-g~~~~~~~~~---~~~~~~WspDg~l~y~~~~~~~~~~~l~~ 155 (648)
...+..+.|||||++|+=.. ...+|+|||+.. +..+. ++.+ ....++|+|+|.++.....+ ..|++
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s-----~D~tiriwd~~~~~~~~~-~l~gH~~~v~~~~f~p~g~~i~Sgs~D----~tvri 272 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGS-----DDKTLRIWDLKDDGRNLK-TLKGHSTYVTSVAFSPDGNLLVSGSDD----GTVRI 272 (456)
T ss_pred ccceeeeEECCCCcEEEEec-----CCceEEEeeccCCCeEEE-EecCCCCceEEEEecCCCCEEEEecCC----CcEEE
Confidence 56788999999999766443 356999999944 34432 2222 24569999999444544322 23778
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCcee---Eeeecccc---eeeeEeec
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR---VLTPRVVG---VDTAASHR 229 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~---~l~~~~~~---~~~~~s~d 229 (648)
+++.++ +-...+..+.. ....+.+++||++|+.. + .+..|.++|+.++. .+ .+...... ....++|+
T Consensus 273 Wd~~~~--~~~~~l~~hs~-~is~~~f~~d~~~l~s~--s-~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~fsp~ 345 (456)
T KOG0266|consen 273 WDVRTG--ECVRKLKGHSD-GISGLAFSPDGNLLVSA--S-YDGTIRVWDLETGS-KLCLKLLSGAENSAPVTSVQFSPN 345 (456)
T ss_pred EeccCC--eEEEeeeccCC-ceEEEEECCCCCEEEEc--C-CCccEEEEECCCCc-eeeeecccCCCCCCceeEEEECCC
Confidence 888875 34445544433 34467899999998754 2 26788999999886 32 23322222 22358999
Q ss_pred CCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 230 GNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 230 g~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
|++|+..+.. ..|...++..
T Consensus 346 ~~~ll~~~~d-----~~~~~w~l~~ 365 (456)
T KOG0266|consen 346 GKYLLSASLD-----RTLKLWDLRS 365 (456)
T ss_pred CcEEEEecCC-----CeEEEEEccC
Confidence 9877655443 3566666654
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0033 Score=67.07 Aligned_cols=239 Identities=11% Similarity=0.084 Sum_probs=140.8
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec---cccCccceeEEecCCeEEEEEeCCCCCCceEEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~---~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~ 157 (648)
..+..+.|+--|.+||+....-| +|-||+..+...+.. ....+ ..++.||||+++.+..+ ..+|..++
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klg----QLlVweWqsEsYVlKQQgH~~~i-~~l~YSpDgq~iaTG~e----DgKVKvWn 378 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLG----QLLVWEWQSESYVLKQQGHSDRI-TSLAYSPDGQLIATGAE----DGKVKVWN 378 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccc----eEEEEEeeccceeeeccccccce-eeEEECCCCcEEEeccC----CCcEEEEe
Confidence 46677888889999999987655 788888877665422 22333 45999999955555543 34577777
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc--eeeeEeecCCEEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG--VDTAASHRGNHFFI 235 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~--~~~~~s~dg~~l~~ 235 (648)
..++ -=...|+++... ...+.|+..|+.++-.+-+ ..+..+|+......+.++....- ....++|.|. |++
T Consensus 379 ~~Sg--fC~vTFteHts~-Vt~v~f~~~g~~llssSLD---GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~ 451 (893)
T KOG0291|consen 379 TQSG--FCFVTFTEHTSG-VTAVQFTARGNVLLSSSLD---GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVC 451 (893)
T ss_pred ccCc--eEEEEeccCCCc-eEEEEEEecCCEEEEeecC---CeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEE
Confidence 7665 234556665443 3367899999888755443 34666777665433444322111 2234667687 444
Q ss_pred EeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccc--eEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCcee
Q 006375 236 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQ--DIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 313 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i 313 (648)
.... ..|.|++.+++++.... ++...++. +. .+.+.++.++-.+.+ ..+++|++=...+. .+++
T Consensus 452 AG~~---d~F~IfvWS~qTGqllD-iLsGHEgP-Vs~l~f~~~~~~LaS~SWD---kTVRiW~if~s~~~------vEtl 517 (893)
T KOG0291|consen 452 AGAQ---DSFEIFVWSVQTGQLLD-ILSGHEGP-VSGLSFSPDGSLLASGSWD---KTVRIWDIFSSSGT------VETL 517 (893)
T ss_pred eecc---ceEEEEEEEeecCeeee-hhcCCCCc-ceeeEEccccCeEEecccc---ceEEEEEeeccCce------eeeE
Confidence 4433 45899999998844333 44444332 44 466666755433333 24566665322221 1344
Q ss_pred ecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 314 EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 314 ~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
..+.. +..+.+.|++.++.+.... +++-.+|.+.+.
T Consensus 518 ~i~sd---vl~vsfrPdG~elaVaTld----gqItf~d~~~~~ 553 (893)
T KOG0291|consen 518 EIRSD---VLAVSFRPDGKELAVATLD----GQITFFDIKEAV 553 (893)
T ss_pred eeccc---eeEEEEcCCCCeEEEEEec----ceEEEEEhhhce
Confidence 44332 3346677889988765432 456667766543
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.5e-05 Score=75.42 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=82.3
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC-----CCchhHHHHHHC-CCEEEEEccCCCCC
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-----AFNSSRLSLLDR-GFIFAIAQIRGGGE 448 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~-----~~~~~~~~l~~~-G~~v~~~~~rG~g~ 448 (648)
..+++.+.. |+..|.+..+.-++. .+...||+.-|..+ ..+. .....+..++.. |..|+++||||-|.
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a----~~~RWiL~s~GNg~-~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~ 184 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEA----KPQRWILVSNGNGE-CYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGS 184 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCC----CCCcEEEEEcCChH-HhhhhhhhccccHHHHHHHHHcCCcEEEECCCcccc
Confidence 467777775 899999887664443 33457777776322 2221 122345566554 99999999999774
Q ss_pred C-ChhhhhcccccCCCCcHhHHHHHHHHHHHcC-CCCCCeEEEEeeChhHHHHHHHHhhC
Q 006375 449 L-GRQWYENGKFLKKKNTFTDFIACAEYLIKNC-YCTKEKLCIEGRSAGGLLIGAVLNMR 506 (648)
Q Consensus 449 ~-g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~~ 506 (648)
. |. .....-+.|..+|++||.++. .+.+++|.+.|+|.||.+++.++.++
T Consensus 185 S~G~--------~s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 185 STGP--------PSRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred CCCC--------CCHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 3 22 123456789999999999743 46899999999999999988877654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.011 Score=64.23 Aligned_cols=201 Identities=9% Similarity=0.039 Sum_probs=108.0
Q ss_pred EeCCCCCEEEEEEeCC-CCeEEEEEEEECCCCCeeec-c-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCC
Q 006375 87 QVSPDNKLVAYAEDTK-GDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 87 ~~SPDG~~la~~~~~~-G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
.++..++++|+..+.. |+....|.++++.....+.. . -.+....++|+|+. .++++...+ ..|.++++.++.
T Consensus 33 ~ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~D----gtIrIWDi~t~~ 108 (568)
T PTZ00420 33 GIACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSED----LTIRVWEIPHND 108 (568)
T ss_pred eEeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCC----CeEEEEECCCCC
Confidence 3566778888887653 44355778888765543321 1 12234569999985 666665432 347777776532
Q ss_pred C------CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEE
Q 006375 163 S------NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFIT 236 (648)
Q Consensus 163 ~------~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~ 236 (648)
. .....+..+ ......+.|+|++..+++++.. +..|.++|+.+++....+.....-....|+++|..|+..
T Consensus 109 ~~~~~i~~p~~~L~gH-~~~V~sVaf~P~g~~iLaSgS~--DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~ 185 (568)
T PTZ00420 109 ESVKEIKDPQCILKGH-KKKISIIDWNPMNYYIMCSSGF--DSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGT 185 (568)
T ss_pred ccccccccceEEeecC-CCcEEEEEECCCCCeEEEEEeC--CCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEE
Confidence 1 011122222 2234468999999988765443 356888899887622222211111234599999976544
Q ss_pred eccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEE-----EeCCEEEEEEecC-CeeEEEEEEcCC
Q 006375 237 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQ-----LFIDHLAVYEREG-GLQKITTYRLPA 299 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~-~~~~l~v~~~~~ 299 (648)
+.. ..|.++|+.+......+-.+........+. .+++.++.....+ ...++.+|++..
T Consensus 186 s~D-----~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 186 CVG-----KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred ecC-----CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 322 367788887633222122233221111121 2233444333332 224689999874
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0038 Score=64.77 Aligned_cols=250 Identities=15% Similarity=0.101 Sum_probs=119.3
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-ccc--------CccceeEEecCC-eEEEEEeCCCCCCce
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV--------GVTASVEWAGNE-ALVYITMDEILRPDK 152 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~--------~~~~~~~WspDg-~l~y~~~~~~~~~~~ 152 (648)
..++.+||||++|+.+.-..+ ++.|+|.++.+.+.. ... .....+.-+|++ .+++.-. +..+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~----~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----d~~~ 151 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPG----TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK----DTGE 151 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETT----EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET----TTTE
T ss_pred cceEEEcCCCCEEEEEecCCC----ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc----cCCe
Confidence 357899999999987765555 799999999887632 111 112345567887 5555432 2457
Q ss_pred EEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec--cc--ceee-eEe
Q 006375 153 AWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR--VV--GVDT-AAS 227 (648)
Q Consensus 153 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~--~~--~~~~-~~s 227 (648)
+|..+.... ....+-...-..+..+..|+|||||++...+. .+.+-++|+++++ ...+... .. +.-. ...
T Consensus 152 I~vVdy~d~--~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~--sn~i~viD~~~~k-~v~~i~~g~~p~~~~~~~~ph 226 (369)
T PF02239_consen 152 IWVVDYSDP--KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG--SNKIAVIDTKTGK-LVALIDTGKKPHPGPGANFPH 226 (369)
T ss_dssp EEEEETTTS--SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG--GTEEEEEETTTTE-EEEEEE-SSSBEETTEEEEEE
T ss_pred EEEEEeccc--cccceeeecccccccccccCcccceeeecccc--cceeEEEeeccce-EEEEeeccccccccccccccC
Confidence 999987765 22222222234555678899999999876543 3588889988876 3333221 11 0011 122
Q ss_pred ecCCEEEEEeccCCCCCcEEEEEeCCC-CCccee----EecCCCCcccceEEEeCCEEEEE-EecCCeeEEEEEEcCCCC
Q 006375 228 HRGNHFFITRRSDELFNSELLACPVDN-TSETTV----LIPHRESVKLQDIQLFIDHLAVY-EREGGLQKITTYRLPAVG 301 (648)
Q Consensus 228 ~dg~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~v~~~~~~g 301 (648)
|..+.++..... +....-++-.+... -....| .++......-...++.+.++++- ........+.+++..+-
T Consensus 227 p~~g~vw~~~~~-~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl- 304 (369)
T PF02239_consen 227 PGFGPVWATSGL-GYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL- 304 (369)
T ss_dssp TTTEEEEEEEBS-SSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT-
T ss_pred CCcceEEeeccc-cceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc-
Confidence 333344433332 11110112112111 011122 22222221122234455566655 12233568888887631
Q ss_pred CcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 302 EPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 302 ~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
... ..+. +.+...+-.+.++.+++.++++.... -.++..||.+|.+
T Consensus 305 ~~~------~~i~-~~~~~~~~h~ef~~dG~~v~vS~~~~--~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 305 KVV------KTIT-PGPGKRVVHMEFNPDGKEVWVSVWDG--NGAIVVYDAKTLK 350 (369)
T ss_dssp EEE------E-HH-HHHT--EEEEEE-TTSSEEEEEEE----TTEEEEEETTTTE
T ss_pred cee------EEEe-ccCCCcEeccEECCCCCEEEEEEecC--CCEEEEEECCCcE
Confidence 111 1111 00110121245667899888765544 3389999999987
|
... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.002 Score=64.49 Aligned_cols=242 Identities=13% Similarity=0.057 Sum_probs=135.0
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSN 164 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~ 164 (648)
+|.|-|+.+.|.|. |..| .+|+-++.++|+......++...+...-.++..+++... .+++.++.++..
T Consensus 29 gP~w~~~~~~L~w~-DI~~---~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~------g~~~~~~~~~~~- 97 (307)
T COG3386 29 GPVWDPDRGALLWV-DILG---GRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH------GVRLLDPDTGGK- 97 (307)
T ss_pred CccCcCCCCEEEEE-eCCC---CeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc------ccEEEeccCCce-
Confidence 78999999988665 4444 388999999887766555554444555555533333322 255555544311
Q ss_pred cEEEEeecC---CCeEEEEEeCCCCcEEEEEEcc---------ccccEEEEEECCCCCceeEeeecccc-eeeeEeecCC
Q 006375 165 DICLYHEKD---DIYSLGLQASESKKFLFIASES---------KITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGN 231 (648)
Q Consensus 165 ~~~~~~~~~---~~~~~~~~~s~Dg~~l~~~~~~---------~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~ 231 (648)
.+++.+..+ ....-+....|||++-+ .... +....||++|..+.. .+++...... .-..|||||+
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~-~~l~~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWF-GDMGYFDLGKSEERPTGSLYRVDPDGGV-VRLLDDDLTIPNGLAFSPDGK 175 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEE-eCCCccccCccccCCcceEEEEcCCCCE-EEeecCcEEecCceEECCCCC
Confidence 122222211 11223567789987544 4333 122479999985554 4444332211 1245999999
Q ss_pred EEEEEeccCCCCCcEEEEEeCCC---C--CcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccc
Q 006375 232 HFFITRRSDELFNSELLACPVDN---T--SETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKS 306 (648)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~ 306 (648)
.+|+.-.. ..+|++++++. . +....+....+.....++..+.++.+......+-..+.+++.+ |..+
T Consensus 176 tly~aDT~----~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~-- 247 (307)
T COG3386 176 TLYVADTP----ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLL-- 247 (307)
T ss_pred EEEEEeCC----CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEE--
Confidence 98887543 35888888752 1 1111222222344577888888876665444333577777776 5543
Q ss_pred cCCCceeecCCCeeeeeCCCCcc---cccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 307 LQGGKSVEFIDPVYSIDPSESVF---SSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 307 l~~~~~i~~~~~~~~v~~~~~~~---~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
..+.+|... + .++.+ +.+.|+++.+....+ ....-+...|.
T Consensus 248 ----~~i~lP~~~--~--t~~~FgG~~~~~L~iTs~~~~~~-~~~~~~~~~G~ 291 (307)
T COG3386 248 ----GEIKLPVKR--P--TNPAFGGPDLNTLYITSARSGMS-RMLTADPLGGG 291 (307)
T ss_pred ----EEEECCCCC--C--ccceEeCCCcCEEEEEecCCCCC-ccccccccCce
Confidence 356666321 1 22333 347777777666555 33334444554
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0063 Score=68.58 Aligned_cols=247 Identities=9% Similarity=-0.025 Sum_probs=132.6
Q ss_pred eEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCcEEEeeEEeCCCCCEEEE
Q 006375 18 FRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAY 97 (648)
Q Consensus 18 ~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~ 97 (648)
.++|.++.|....+|.+...++.+...+ + ++|.++-.. +. ..+.|+|||+.|.|
T Consensus 135 Spdg~~la~~~d~~G~E~~~l~v~d~~t------------------g-~~l~~~i~~------~~-~~~~w~~D~~~~~y 188 (686)
T PRK10115 135 TPDNTIMALAEDFLSRRQYGIRFRNLET------------------G-NWYPELLDN------VE-PSFVWANDSWTFYY 188 (686)
T ss_pred CCCCCEEEEEecCCCcEEEEEEEEECCC------------------C-CCCCccccC------cc-eEEEEeeCCCEEEE
Confidence 3578888999999999988888877542 1 222221111 11 35899999999999
Q ss_pred EEeCCC-CeEEEEEEEECCCCC--eeec--cccCccceeEEec-CC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEe
Q 006375 98 AEDTKG-DEIYTVYVIDIETGT--PVGK--PLVGVTASVEWAG-NE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYH 170 (648)
Q Consensus 98 ~~~~~G-~e~~~l~v~dl~~g~--~~~~--~~~~~~~~~~Wsp-Dg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 170 (648)
+....+ ....+||..++.++. .... ...+...-..|.+ |+ .+++.... ....++++++......+...+..
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~--~~~~~~~l~~~~~~~~~~~~~~~ 266 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS--ATTSEVLLLDAELADAEPFVFLP 266 (686)
T ss_pred EEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC--CccccEEEEECcCCCCCceEEEE
Confidence 987543 234799999999983 2211 1112122234555 77 66644432 22345777664332122333333
Q ss_pred ecCCCeEEEEEeCCCCcEEEEEEccc-cccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEeccCCCCCcEEE
Q 006375 171 EKDDIYSLGLQASESKKFLFIASESK-ITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSELL 248 (648)
Q Consensus 171 ~~~~~~~~~~~~s~Dg~~l~~~~~~~-~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~ 248 (648)
....... .+. ..+..+++.++.. ....|..+++.+...++.+.+...+ ..-.+...++.|++..+.+ ...+|+
T Consensus 267 ~~~~~~~-~~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~--g~~~l~ 341 (686)
T PRK10115 267 RRKDHEY-SLD--HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQR--GLTSLR 341 (686)
T ss_pred CCCCCEE-EEE--eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeC--CEEEEE
Confidence 3222222 222 2235566666543 4578888888742236667665333 2223444477888888863 345788
Q ss_pred EEeCCCCCcceeEe-cCCCCcccceEE--EeCCEEEEEEecC-CeeEEEEEEcC
Q 006375 249 ACPVDNTSETTVLI-PHRESVKLQDIQ--LFIDHLAVYEREG-GLQKITTYRLP 298 (648)
Q Consensus 249 ~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~l~~~~~~~-~~~~l~v~~~~ 298 (648)
.++..+ +....+. +........+.. ...+.+++....- ....++.+++.
T Consensus 342 ~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~ 394 (686)
T PRK10115 342 QINRKT-REVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMD 394 (686)
T ss_pred EEcCCC-CceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECC
Confidence 888754 2222122 211111111111 2234454444433 34577777776
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00092 Score=68.69 Aligned_cols=222 Identities=13% Similarity=0.120 Sum_probs=130.1
Q ss_pred CceEEEecccccCC-------CCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee---eccccCccceeEE
Q 006375 64 PEHLILDENVKAEG-------RGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV---GKPLVGVTASVEW 133 (648)
Q Consensus 64 ~~~~lld~n~~~~~-------~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~---~~~~~~~~~~~~W 133 (648)
..-++.|..+.... .....-.-++||.|+|++|-..- ..|.|++..+-..+ ...+.++.. ++|
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~------~sisIyEtpsf~lld~Kslki~gIr~-Fsw 354 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG------NSISIYETPSFMLLDKKSLKISGIRD-FSW 354 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc------ceEEEEecCceeeecccccCCccccC-ccc
Confidence 44567776554321 12233346799999999997753 35667765442222 224566554 999
Q ss_pred ecCC-eEEEEEeCCCCCCceEEEEECCCCCCCc-EEEEeecCCCeEEEEEeCCCCcEEEEEEccccc---------cEEE
Q 006375 134 AGNE-ALVYITMDEILRPDKAWLHKLEADQSND-ICLYHEKDDIYSLGLQASESKKFLFIASESKIT---------RFVF 202 (648)
Q Consensus 134 spDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~---------~~l~ 202 (648)
||-+ -|+|=..-.++.+.++-++.+.+++.-. ..++...| +...|-+.|.||.+...+... -+|+
T Consensus 355 sP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsD----ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIf 430 (698)
T KOG2314|consen 355 SPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSD----CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIF 430 (698)
T ss_pred CCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeec----cEEEeccCCcEEEEEEEeeccccccceEeeEEEE
Confidence 9999 7777655446677888888887763211 11232222 245799999999998765322 2455
Q ss_pred EEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcc--cceEEEeCCEE
Q 006375 203 YLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVK--LQDIQLFIDHL 280 (648)
Q Consensus 203 ~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l 280 (648)
.++-..- +...+.-...-..+.|.|.|+.+.+++......+.+.|.+.... ...+ ++..-+... -..+++-|..+
T Consensus 431 rireKdI-pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-~~~~-lVk~~dk~~~N~vfwsPkG~fv 507 (698)
T KOG2314|consen 431 RIREKDI-PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-KKPS-LVKELDKKFANTVFWSPKGRFV 507 (698)
T ss_pred EeeccCC-CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-Cchh-hhhhhcccccceEEEcCCCcEE
Confidence 5443221 12222212223456799999999988876555566677665422 2222 332222222 23455566777
Q ss_pred EEEEecCCeeEEEEEEcCC
Q 006375 281 AVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 281 ~~~~~~~~~~~l~v~~~~~ 299 (648)
++.........+..++.+.
T Consensus 508 vva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 508 VVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred EEEEecccccceEEEecch
Confidence 7777766667888888773
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00074 Score=62.55 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=88.2
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCc---cceeEEecCCeEEEEEeCCC--------
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV---TASVEWAGNEALVYITMDEI-------- 147 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~---~~~~~WspDg~l~y~~~~~~-------- 147 (648)
...+..+.++||++.||-+ | +..|+++|+.++.+.+. ++++. ...+.|--||+..|++..+.
T Consensus 40 dsqVNrLeiTpdk~~LAaa----~--~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR 113 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAA----G--NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR 113 (311)
T ss_pred ccceeeEEEcCCcchhhhc----c--CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence 4466788999999999965 3 56899999999876432 33332 34477888885556654321
Q ss_pred -----------------------------CCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccc
Q 006375 148 -----------------------------LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKIT 198 (648)
Q Consensus 148 -----------------------------~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~ 198 (648)
.+...|+.+||+...-..+++ .|. ....-++...|||++++. .+++
T Consensus 114 ~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-Pe~-~~~i~sl~v~~dgsml~a-~nnk-- 188 (311)
T KOG0315|consen 114 SLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-PED-DTSIQSLTVMPDGSMLAA-ANNK-- 188 (311)
T ss_pred CcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-CCC-CcceeeEEEcCCCcEEEE-ecCC--
Confidence 112335556665542222222 122 234446788999998874 3433
Q ss_pred cEEEEEECCCCC---ceeEeeecccc----eeeeEeecCCEEEEEecc
Q 006375 199 RFVFYLDVSKPE---ELRVLTPRVVG----VDTAASHRGNHFFITRRS 239 (648)
Q Consensus 199 ~~l~~~dl~~~~---~~~~l~~~~~~----~~~~~s~dg~~l~~~~~~ 239 (648)
...|++++-+.. ++.++.+-... ....+|||+++|+-.+.+
T Consensus 189 G~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 189 GNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD 236 (311)
T ss_pred ccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence 356777765544 34444432221 234599999988766554
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00016 Score=70.09 Aligned_cols=211 Identities=18% Similarity=0.150 Sum_probs=109.7
Q ss_pred EEEEecCCCCCCCCCCCchhHHHHH-HCCCE--EEEEccCCCC--CCChhhhhccc-------ccCCCC-----cHhHHH
Q 006375 408 LLLYGYGSYEICNDPAFNSSRLSLL-DRGFI--FAIAQIRGGG--ELGRQWYENGK-------FLKKKN-----TFTDFI 470 (648)
Q Consensus 408 ~vl~~hGg~~~~~~~~~~~~~~~l~-~~G~~--v~~~~~rG~g--~~g~~~~~~~~-------~~~~~~-----~~~D~~ 470 (648)
..|++||..+. ..+|...+..+. +.|.+ ++.+++.-.| .+...|..... ..+..+ ...=+.
T Consensus 13 PTifihG~~gt--~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl~ 90 (255)
T PF06028_consen 13 PTIFIHGYGGT--ANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWLK 90 (255)
T ss_dssp EEEEE--TTGG--CCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHHH
T ss_pred cEEEECCCCCC--hhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHHH
Confidence 46778884443 345777788886 55543 5555554322 22223322100 111221 234466
Q ss_pred HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC-----ceeEEEecCCcccccccccCCCCCCCcccccccCCCC
Q 006375 471 ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD-----LFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPW 545 (648)
Q Consensus 471 ~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~ 545 (648)
.++.+|.++..+ .++-++||||||..+..++..+.. .++.+|..++..|-...... . ........-| |.
T Consensus 91 ~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~-~--~~~~~~~~~g-p~ 164 (255)
T PF06028_consen 91 KVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMND-D--QNQNDLNKNG-PK 164 (255)
T ss_dssp HHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC----TTTT-CSTT--BS
T ss_pred HHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccc-c--chhhhhcccC-Cc
Confidence 788888888665 899999999999999888877422 35666666655554332211 0 0001112224 52
Q ss_pred -CHHHHHHHHcC-CccccCCCCCCCeEEEeecC------CCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC
Q 006375 546 -KEEFYFYMKSY-SPVDNVKAQNYPHILVTAGL------NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS 617 (648)
Q Consensus 546 -~~~~~~~~~~~-sp~~~~~~~~~P~~li~~g~------~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~ 617 (648)
.-+.+..+.+. . .++.+ +. .||-+.|. .|-+||...++.+..-++......+-+.+... ++.|....
T Consensus 165 ~~~~~y~~l~~~~~--~~~p~-~i-~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~-~a~HS~Lh 239 (255)
T PF06028_consen 165 SMTPMYQDLLKNRR--KNFPK-NI-QVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGK-DAQHSQLH 239 (255)
T ss_dssp S--HHHHHHHHTHG--GGSTT-T--EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESG-GGSCCGGG
T ss_pred ccCHHHHHHHHHHH--hhCCC-Ce-EEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECC-CCccccCC
Confidence 33344444332 1 11111 23 49999998 89999988887776666655445555566532 56786554
Q ss_pred chHHHHHHHHHHHHHHH
Q 006375 618 GRFERLREAAFTYTFLM 634 (648)
Q Consensus 618 ~~~~~~~~~~~~~~fl~ 634 (648)
...+..+ .+..||.
T Consensus 240 eN~~V~~---~I~~FLw 253 (255)
T PF06028_consen 240 ENPQVDK---LIIQFLW 253 (255)
T ss_dssp CCHHHHH---HHHHHHC
T ss_pred CCHHHHH---HHHHHhc
Confidence 4443222 4456764
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00074 Score=66.25 Aligned_cols=126 Identities=18% Similarity=0.108 Sum_probs=73.8
Q ss_pred CCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCC-eEEEEEeCCCCCCceEE
Q 006375 78 RGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAW 154 (648)
Q Consensus 78 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~ 154 (648)
|+.. +-..++||||++||- |+...++++||+.|..+.-..- .+-...++||||| .|+-... ...|.
T Consensus 114 H~e~-Vl~~~fsp~g~~l~t-----GsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~-----dg~I~ 182 (480)
T KOG0271|consen 114 HGEA-VLSVQFSPTGSRLVT-----GSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK-----DGSIR 182 (480)
T ss_pred CCCc-EEEEEecCCCceEEe-----cCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc-----CCeEE
Confidence 4433 346799999999873 4447899999999877654321 2234569999999 7754322 34577
Q ss_pred EEECCCCCCCcEEEEeecCCCeEEEEEe-----CCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc
Q 006375 155 LHKLEADQSNDICLYHEKDDIYSLGLQA-----SESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV 219 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~ 219 (648)
+++..+++..-.. +..+ ..+...++| .|..++++ ++..++.+.++|+..+.....+....
T Consensus 183 lwdpktg~~~g~~-l~gH-~K~It~Lawep~hl~p~~r~la---s~skDg~vrIWd~~~~~~~~~lsgHT 247 (480)
T KOG0271|consen 183 LWDPKTGQQIGRA-LRGH-KKWITALAWEPLHLVPPCRRLA---SSSKDGSVRIWDTKLGTCVRTLSGHT 247 (480)
T ss_pred EecCCCCCccccc-ccCc-ccceeEEeecccccCCCcccee---cccCCCCEEEEEccCceEEEEeccCc
Confidence 8887776432222 2222 334444444 45667554 22233556677776654233343333
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.8e-05 Score=85.17 Aligned_cols=99 Identities=13% Similarity=0.053 Sum_probs=67.4
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChh--hh-----hc---cc---------ccCCCCc
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ--WY-----EN---GK---------FLKKKNT 465 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~--~~-----~~---~~---------~~~~~~~ 465 (648)
..|+||++||-.+... .|...+..|+++||.|+++|+||+|..... +. .. +. +.+-...
T Consensus 448 g~P~VVllHG~~g~~~--~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~ 525 (792)
T TIGR03502 448 GWPVVIYQHGITGAKE--NALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQS 525 (792)
T ss_pred CCcEEEEeCCCCCCHH--HHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHH
Confidence 4589999999655433 355666788889999999999999865322 00 00 00 0122345
Q ss_pred HhHHHHHHHHHH------Hc----CCCCCCeEEEEeeChhHHHHHHHHhh
Q 006375 466 FTDFIACAEYLI------KN----CYCTKEKLCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 466 ~~D~~~~~~~l~------~~----~~~d~~~i~i~G~S~GG~l~~~~~~~ 505 (648)
+.|+......|. .. +..+..++.++||||||.++..++..
T Consensus 526 v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 526 ILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 677777777776 11 12456899999999999998887764
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00061 Score=74.60 Aligned_cols=116 Identities=12% Similarity=0.114 Sum_probs=76.5
Q ss_pred EeeEEeCCCCCEEEEEEeCC-------CCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCCCCCCceEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTK-------GDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAW 154 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~-------G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~ 154 (648)
+..|+|||||+.|+|..+.+ .+...+|+++++++++... .+.+....+.||||| +|+|+.. .+|+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~~------g~v~ 471 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMIIG------GKVY 471 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEEC------CEEE
Confidence 67899999999998886531 1124588999998887754 444445679999999 9999872 2577
Q ss_pred E---EECCCCCCCcEEE-----EeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 155 L---HKLEADQSNDICL-----YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 155 ~---~~l~~~~~~~~~~-----~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
. ...+.+ + ..+ .......-..++.|..|++.+ +. .......+|.+++++..
T Consensus 472 Va~Vvr~~~G--~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~-~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 472 LAVVEQTEDG--Q-YALTNPREVGPGLGDTAVSLDWRTGDSLV-VG-RSDPEHPVWYVNLDGSN 530 (591)
T ss_pred EEEEEeCCCC--c-eeecccEEeecccCCccccceEecCCEEE-EE-ecCCCCceEEEecCCcc
Confidence 6 443343 1 222 111111112457899999844 43 33455779999999775
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.004 Score=67.67 Aligned_cols=199 Identities=13% Similarity=0.047 Sum_probs=107.3
Q ss_pred EEEeeEEeCCC-CCEEEEEEeCCCCeEEEEEEEECCCCCe-ee------cccc---CccceeEEecCC-eEEEEEeCCCC
Q 006375 81 YSVGCFQVSPD-NKLVAYAEDTKGDEIYTVYVIDIETGTP-VG------KPLV---GVTASVEWAGNE-ALVYITMDEIL 148 (648)
Q Consensus 81 ~~~~~~~~SPD-G~~la~~~~~~G~e~~~l~v~dl~~g~~-~~------~~~~---~~~~~~~WspDg-~l~y~~~~~~~ 148 (648)
-.+..+.|||+ +++||-.. .+| .|+|||+.++.. .. ..+. .....++|+|++ .++.+...
T Consensus 75 ~~V~~lafsP~~~~lLASgS-~Dg----tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~--- 146 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGS-EDL----TIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF--- 146 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEe-CCC----eEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC---
Confidence 35778899997 67665443 233 799999976432 10 0111 224569999999 77655442
Q ss_pred CCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce--ee--
Q 006375 149 RPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV--DT-- 224 (648)
Q Consensus 149 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~--~~-- 224 (648)
...|.++++.++. ....+.. ......+.|++||+.|+..+ ....|.++|+.+++....+....... ..
T Consensus 147 -DgtIrIWDl~tg~--~~~~i~~--~~~V~SlswspdG~lLat~s---~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 147 -DSFVNIWDIENEK--RAFQINM--PKKLSSLKWNIKGNLLSGTC---VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW 218 (568)
T ss_pred -CCeEEEEECCCCc--EEEEEec--CCcEEEEEECCCCCEEEEEe---cCCEEEEEECCCCcEEEEEecccCCceeEEEE
Confidence 2347888888763 2222222 23345789999999886543 23568999998876222232222211 11
Q ss_pred --eEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcC
Q 006375 225 --AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 225 --~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~ 298 (648)
.++++++.|+-.... +.....|.+.|+.........+..+.........++. +.+++....+ ..+++|++.
T Consensus 219 ~~~fs~d~~~IlTtG~d-~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD--~tIr~~e~~ 293 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFS-KNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD--GNCRYYQHS 293 (568)
T ss_pred eeeEcCCCCEEEEEEcC-CCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC--CeEEEEEcc
Confidence 134777766554443 2223468888887533222122222111111122222 3444444433 456777775
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00051 Score=65.56 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=41.9
Q ss_pred HHHHHHHHHc-CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 470 IACAEYLIKN-CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 470 ~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
..-+.=.+++ .-+|++|.+|+|+|+||++++.++..+|+.|.+.++.+|-+
T Consensus 121 ~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSl 172 (264)
T COG2819 121 TEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSL 172 (264)
T ss_pred HHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchh
Confidence 3444433444 56899999999999999999999999999999999999843
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00022 Score=69.33 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=76.2
Q ss_pred CCceEEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCC-eE
Q 006375 63 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-AL 139 (648)
Q Consensus 63 ~~~~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg-~l 139 (648)
...+|+=|+ |+..+..++|.+||..++=++- | ...|.|||+++|.-.+... .+-.+.+.||||| .|
T Consensus 185 ~~~qvl~~p-------gh~pVtsmqwn~dgt~l~tAS~--g--sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 185 HHLQVLQDP-------GHNPVTSMQWNEDGTILVTASF--G--SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cchhheeCC-------CCceeeEEEEcCCCCEEeeccc--C--cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 344565554 4467889999999998875543 3 3578999999988765432 2224568999999 87
Q ss_pred EEEEeCCCCCCceEE-EEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECC
Q 006375 140 VYITMDEILRPDKAW-LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS 207 (648)
Q Consensus 140 ~y~~~~~~~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~ 207 (648)
|-.+.+. ...|| .++.-+. + +-+. ..+..-...|||+|++|+|.... ...||.+...
T Consensus 254 faAt~da---vfrlw~e~q~wt~--e-rw~l---gsgrvqtacWspcGsfLLf~~sg--sp~lysl~f~ 311 (445)
T KOG2139|consen 254 FAATCDA---VFRLWQENQSWTK--E-RWIL---GSGRVQTACWSPCGSFLLFACSG--SPRLYSLTFD 311 (445)
T ss_pred EEecccc---eeeeehhccccee--c-ceec---cCCceeeeeecCCCCEEEEEEcC--CceEEEEeec
Confidence 7666543 23344 2222221 1 1111 12233466899999999997642 3455655543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0038 Score=61.53 Aligned_cols=193 Identities=15% Similarity=0.149 Sum_probs=113.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-c-ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..+.|+|++++|+.... + ..|+++++.+++.... . .......+.|+|++.++++.. ....|+.+++.
T Consensus 53 ~i~~~~~~~~~~~l~~~~~-~----~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~i~~~~~~ 123 (289)
T cd00200 53 PVRDVAASADGTYLASGSS-D----KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS----RDKTIKVWDVE 123 (289)
T ss_pred ceeEEEECCCCCEEEEEcC-C----CeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec----CCCeEEEEECC
Confidence 3467899999988887654 2 3799999988654432 1 122345589999985555543 23458888887
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEec
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRR 238 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~ 238 (648)
+. +....+... ......+.++|++++++... ....|+++|+.+++....+...... ....|+++++.+++.+.
T Consensus 124 ~~--~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 124 TG--KCLTTLRGH-TDWVNSVAFSPDGTFVASSS---QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred Cc--EEEEEeccC-CCcEEEEEEcCcCCEEEEEc---CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC
Confidence 54 223333322 22344678999988776543 2356889998866522233222212 23458899988877765
Q ss_pred cCCCCCcEEEEEeCCCCCcceeEe-cCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcCC
Q 006375 239 SDELFNSELLACPVDNTSETTVLI-PHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~ 299 (648)
. ..+..+++....... .+ .+.. .+..+.+.++. +++....+ ..+.++++..
T Consensus 198 ~-----~~i~i~d~~~~~~~~-~~~~~~~--~i~~~~~~~~~~~~~~~~~~--~~i~i~~~~~ 250 (289)
T cd00200 198 D-----GTIKLWDLSTGKCLG-TLRGHEN--GVNSVAFSPDGYLLASGSED--GTIRVWDLRT 250 (289)
T ss_pred C-----CcEEEEECCCCceec-chhhcCC--ceEEEEEcCCCcEEEEEcCC--CcEEEEEcCC
Confidence 2 357777876522222 22 2222 35666776643 33333323 3677778763
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00023 Score=73.43 Aligned_cols=85 Identities=12% Similarity=0.059 Sum_probs=56.5
Q ss_pred hHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC
Q 006375 427 SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR 506 (648)
Q Consensus 427 ~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 506 (648)
....|+. |+.|.+.|.+--+.- ....+.-.++|++..+...++. +.++ +-++|.|+||.+++++++..
T Consensus 122 ~V~~Ll~-g~dVYl~DW~~p~~v--------p~~~~~f~ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa~Al~ 189 (406)
T TIGR01849 122 TVEALLP-DHDVYITDWVNARMV--------PLSAGKFDLEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAAVALM 189 (406)
T ss_pred HHHHHhC-CCcEEEEeCCCCCCC--------chhcCCCCHHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHHHHHH
Confidence 3467777 999999986522210 1123445678887655544433 3344 99999999999876555443
Q ss_pred -----CCceeEEEecCCccccc
Q 006375 507 -----PDLFKAAVAAVPFVDVL 523 (648)
Q Consensus 507 -----p~~~~a~v~~~~~~d~~ 523 (648)
|+.++.+++..+.+|..
T Consensus 190 a~~~~p~~~~sltlm~~PID~~ 211 (406)
T TIGR01849 190 AENEPPAQPRSMTLMGGPIDAR 211 (406)
T ss_pred HhcCCCCCcceEEEEecCccCC
Confidence 55789999888888854
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.6e-05 Score=87.82 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=82.4
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCC-CCC--chhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccC-CCC
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAF--NSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK-KKN 464 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~-~~~--~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~-~~~ 464 (648)
+.+.++.|+.. ...+ .|++|++|||.-.... ..| ......+..+..+|+.++||-|- +| |...+.... +-.
T Consensus 97 LylNV~tp~~~-~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~-lG--F~st~d~~~~gN~ 171 (545)
T KOG1516|consen 97 LYLNVYTPQGC-SESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGP-LG--FLSTGDSAAPGNL 171 (545)
T ss_pred ceEEEeccCCC-ccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEeccccee-ce--eeecCCCCCCCcc
Confidence 55565666553 2212 8999999997432222 222 12223445568999999999642 22 222222222 224
Q ss_pred cHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhCC---CceeEEEecCCc
Q 006375 465 TFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVAAVPF 519 (648)
Q Consensus 465 ~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~~~a~v~~~~~ 519 (648)
.+.|...|++|+.++ -.-||++|.++|+|+||..+..++.. | .+|+.+|+.+|.
T Consensus 172 gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~S-p~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 172 GLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLS-PHSRGLFHKAISMSGN 231 (545)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcC-HhhHHHHHHHHhhccc
Confidence 678999999999876 33699999999999999988777763 4 378888888774
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00022 Score=71.49 Aligned_cols=157 Identities=14% Similarity=0.179 Sum_probs=102.3
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
.-.+..+.+|||+++||+.-. ...|+++-..|++... ..+++....+.|+.|| .|+.+.. ..+||.++
T Consensus 303 ~~~~e~FeVShd~~fia~~G~-----~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~-----~GeV~v~n 372 (514)
T KOG2055|consen 303 EKSMERFEVSHDSNFIAIAGN-----NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGG-----TGEVYVWN 372 (514)
T ss_pred cchhheeEecCCCCeEEEccc-----CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcC-----CceEEEEe
Confidence 346778999999999998643 3478999999988664 3678888889999999 6655432 33799999
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECC--CCCceeEeeec---ccc-eeeeEeecCC
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS--KPEELRVLTPR---VVG-VDTAASHRGN 231 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~--~~~~~~~l~~~---~~~-~~~~~s~dg~ 231 (648)
++.. .-...+...+......++.|.+|+|++..+.++ --.||-.+-. +. .++++..- .-. ....|+||+.
T Consensus 373 l~~~--~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G-iVNIYd~~s~~~s~-~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 373 LRQN--SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG-IVNIYDGNSCFAST-NPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred cCCc--ceEEEEeecCccceeeeeecCCCceEEeccCcc-eEEEeccchhhccC-CCCchhhhhhhheeeeeeeeCcchh
Confidence 9887 334445444445566788899999988755443 2344432211 11 13333211 111 2346999999
Q ss_pred EEEEEeccCCCCCcEEEEEe
Q 006375 232 HFFITRRSDELFNSELLACP 251 (648)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~ 251 (648)
.|++.++.. ....+|.-++
T Consensus 449 iLAiaS~~~-knalrLVHvP 467 (514)
T KOG2055|consen 449 ILAIASRVK-KNALRLVHVP 467 (514)
T ss_pred hhhhhhhcc-ccceEEEecc
Confidence 999988862 3335665554
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0002 Score=68.80 Aligned_cols=189 Identities=16% Similarity=0.162 Sum_probs=107.6
Q ss_pred EEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec--cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCC
Q 006375 86 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 86 ~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
..+||+|++||-.+ ++++.|+|..|=+.... -+..+.. +.|+.|+ .++-..+.+ ..|..+++..+
T Consensus 14 c~fSp~g~yiAs~~------~yrlviRd~~tlq~~qlf~cldki~y-ieW~ads~~ilC~~yk~----~~vqvwsl~Qp- 81 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS------RYRLVIRDSETLQLHQLFLCLDKIVY-IEWKADSCHILCVAYKD----PKVQVWSLVQP- 81 (447)
T ss_pred eeECCCCCeeeeee------eeEEEEeccchhhHHHHHHHHHHhhh-eeeeccceeeeeeeecc----ceEEEEEeecc-
Confidence 47899999999776 46899999988766542 2344444 9999999 776655422 12555555433
Q ss_pred CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEeccCC
Q 006375 163 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDE 241 (648)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~~~ 241 (648)
+-..-..++ +.-.....||||||.|+.++. -..+|-++.+.+.+ -..+.--..+ --+.+.+||+..++.++++-
T Consensus 82 -ew~ckIdeg-~agls~~~WSPdgrhiL~tse--F~lriTVWSL~t~~-~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 82 -EWYCKIDEG-QAGLSSISWSPDGRHILLTSE--FDLRITVWSLNTQK-GYLLPHPKTNVKGYAFHPDGQFCAILSRRDC 156 (447)
T ss_pred -eeEEEeccC-CCcceeeeECCCcceEeeeec--ceeEEEEEEeccce-eEEecccccCceeEEECCCCceeeeeecccH
Confidence 333333332 223346799999999987553 34566667776655 2222211122 23568899999888888753
Q ss_pred CCCcEEEEEeCCCCCccee-EecC--CCCcccceEEEeCCEEEEEEecCCe-eEEEEEEcC
Q 006375 242 LFNSELLACPVDNTSETTV-LIPH--RESVKLQDIQLFIDHLAVYEREGGL-QKITTYRLP 298 (648)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~-~~l~v~~~~ 298 (648)
..-.+|..+ ..| +..+ -+..++.+++|.+|+.++...++-. ..++.|...
T Consensus 157 kdyv~i~~c-------~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~ 210 (447)
T KOG4497|consen 157 KDYVQISSC-------KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG 210 (447)
T ss_pred HHHHHHHhh-------HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec
Confidence 322333211 123 1110 1122355666666655444444432 244555443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0061 Score=58.67 Aligned_cols=195 Identities=10% Similarity=0.128 Sum_probs=104.8
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
-.+..+..||-+... .+ ++..-+|++||+...+-.- ....+ ..-.++.|.|=++-+... ...|.++|+.
T Consensus 101 ~~V~sL~~sP~~d~F--lS---~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~----~~~IkLyD~R 170 (311)
T KOG1446|consen 101 KRVNSLSVSPKDDTF--LS---SSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANG----SELIKLYDLR 170 (311)
T ss_pred ceEEEEEecCCCCeE--Ee---cccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecC----CCeEEEEEec
Confidence 456788899988643 32 2223489999998654321 11122 223778888833333321 1146666665
Q ss_pred CCCCCcEEEEeec--CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEee--ecccc--eeeeEeecCCEE
Q 006375 160 ADQSNDICLYHEK--DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT--PRVVG--VDTAASHRGNHF 233 (648)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~--~~~~~--~~~~~s~dg~~l 233 (648)
.-.+..-..|.-. +..-+..+.+|||||+|+++.+ .+.+|++|.=+|+....+. ++... ....++|||+.+
T Consensus 171 s~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~---~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 171 SFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN---ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred ccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC---CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEE
Confidence 4333333333222 2222347899999999998754 3679999998886111121 12111 345689999865
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEc
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 297 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~ 297 (648)
+-.++ +.+|.+++++++.+.. .+.........-+.+.+.+..+... .+.+..|-.
T Consensus 248 l~gs~-----dg~i~vw~~~tg~~v~-~~~~~~~~~~~~~~fnP~~~mf~sa---~s~l~fw~p 302 (311)
T KOG1446|consen 248 LSGSD-----DGTIHVWNLETGKKVA-VLRGPNGGPVSCVRFNPRYAMFVSA---SSNLVFWLP 302 (311)
T ss_pred EEecC-----CCcEEEEEcCCCcEee-EecCCCCCCccccccCCceeeeeec---CceEEEEec
Confidence 44333 2578888887643222 2211112223334455565544443 244555543
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00019 Score=64.79 Aligned_cols=118 Identities=17% Similarity=0.066 Sum_probs=67.4
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCC
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKA 564 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~ 564 (648)
++++++|.|+||+.|.+++.++. + .+|+..|.+.+...+.. .+... .+|. ...++..+.++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~~-~ig~~----~~y~-~~~~~h~~eL~---------- 120 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENMEG-KIDRP----EEYA-DIATKCVTNFR---------- 120 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHHH-HhCCC----cchh-hhhHHHHHHhh----------
Confidence 46999999999999999999875 3 46777787776543211 01000 0111 11233222333
Q ss_pred CCCC-eEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 565 QNYP-HILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 565 ~~~P-~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
++-| ..+++..+.|.+.++.++.+.++.. .+.++. +|+.|.+. ..+. -+..+.+|+.
T Consensus 121 ~~~p~r~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~---~GGdH~f~--~fe~--~l~~I~~F~~ 178 (180)
T PRK04940 121 EKNRDRCLVILSRNDEVLDSQRTAEELHPY------YEIVWD---EEQTHKFK--NISP--HLQRIKAFKT 178 (180)
T ss_pred hcCcccEEEEEeCCCcccCHHHHHHHhccC------ceEEEE---CCCCCCCC--CHHH--HHHHHHHHHh
Confidence 1222 3788889999999887776665332 022333 48888543 2221 2335677873
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0018 Score=60.50 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=103.2
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCC------------
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEI------------ 147 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~------------ 147 (648)
++....|+|...-+.++... | -+|++||...++..... ..+-.....|+||| ++++...++.
T Consensus 66 svdql~w~~~~~d~~atas~-d---k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~ 141 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASG-D---KTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIV 141 (313)
T ss_pred chhhheeCCCCCcceEEecC-C---ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEeccccee
Confidence 66678888876665555442 2 47999999998876532 22223458999999 8877654331
Q ss_pred --------------CCCceEEEEECCCCCCCcEEEEeecC--------CCeEEEEEeCCCCcEEEEEEccccccEEEEEE
Q 006375 148 --------------LRPDKAWLHKLEADQSNDICLYHEKD--------DIYSLGLQASESKKFLFIASESKITRFVFYLD 205 (648)
Q Consensus 148 --------------~~~~~l~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 205 (648)
+-..+++...-|-+. -..+-|.+-. +.-.+-+.++|||||+++.+.+ .-+-++|
T Consensus 142 ~~~~~~~e~ne~~w~~~nd~Fflt~GlG~-v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsAD---AlvSLWD 217 (313)
T KOG1407|consen 142 NEEQFKFEVNEISWNNSNDLFFLTNGLGC-VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD---ALVSLWD 217 (313)
T ss_pred ehhcccceeeeeeecCCCCEEEEecCCce-EEEEeccccccccccccCCcceEEEEECCCCceEeecccc---ceeeccC
Confidence 112334444443321 1122222111 2223346899999999875543 3344556
Q ss_pred CCCCCceeEeeecccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEE
Q 006375 206 VSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYE 284 (648)
Q Consensus 206 l~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (648)
++.--=.+.++.....+ ..++|+||+.|+-.+.+ .-|-+..+++ +..-|-++.... .-.++|-+++.++.+
T Consensus 218 ~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED-----h~IDIA~vet-Gd~~~eI~~~~~--t~tVAWHPk~~LLAy 289 (313)
T KOG1407|consen 218 VDELICERCISRLDWPVRTLSFSHDGRMLASASED-----HFIDIAEVET-GDRVWEIPCEGP--TFTVAWHPKRPLLAY 289 (313)
T ss_pred hhHhhhheeeccccCceEEEEeccCcceeeccCcc-----ceEEeEeccc-CCeEEEeeccCC--ceeEEecCCCceeeE
Confidence 55432012232222223 46799999977644432 3455666666 445565554433 345666666544444
Q ss_pred e
Q 006375 285 R 285 (648)
Q Consensus 285 ~ 285 (648)
.
T Consensus 290 A 290 (313)
T KOG1407|consen 290 A 290 (313)
T ss_pred E
Confidence 3
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0047 Score=66.48 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=91.7
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
..+..+.|+|++..+..+...+| .|.|||+++++..... -.+....++|+|||.++++... ...|..+++
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~Dg----tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~----Dg~IrIwD~ 197 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGADM----VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK----DKKLNIIDP 197 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCCC----EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC----CCEEEEEEC
Confidence 45678899999753333433333 7999999998765321 1223456999999944444432 235888888
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcc-ccccEEEEEECCCCC-ceeEeeecc-cce-eeeEeecCCEEE
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES-KITRFVFYLDVSKPE-ELRVLTPRV-VGV-DTAASHRGNHFF 234 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~dl~~~~-~~~~l~~~~-~~~-~~~~s~dg~~l~ 234 (648)
.++. ....+..+.........|.+++..|+....+ .....|.++|+.+.. ......... ... ...+++++..|+
T Consensus 198 rsg~--~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~ 275 (493)
T PTZ00421 198 RDGT--IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLY 275 (493)
T ss_pred CCCc--EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEE
Confidence 8762 2222222222222346788888776644333 345789999997654 122211111 112 235788988776
Q ss_pred EEeccCCCCCcEEEEEeCCC
Q 006375 235 ITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~ 254 (648)
.....+ ..|..+++..
T Consensus 276 lggkgD----g~Iriwdl~~ 291 (493)
T PTZ00421 276 IGSKGE----GNIRCFELMN 291 (493)
T ss_pred EEEeCC----CeEEEEEeeC
Confidence 654321 3566666654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0084 Score=61.33 Aligned_cols=254 Identities=14% Similarity=0.119 Sum_probs=136.3
Q ss_pred CCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee------ccc-cCccceeEEecCC-eEEEEEeCCC
Q 006375 76 EGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG------KPL-VGVTASVEWAGNE-ALVYITMDEI 147 (648)
Q Consensus 76 ~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~------~~~-~~~~~~~~WspDg-~l~y~~~~~~ 147 (648)
-.||+-.+..+.+-|.|-+++ .|+-.++|..||+++....- ++- ......++||+.| .|+.++...
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~-----sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a- 236 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFV-----SGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA- 236 (641)
T ss_pred ccCCceEEEEeeecCCCceee-----eccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc-
Confidence 347888899999999998876 36667899999998754321 111 2235569999999 887765422
Q ss_pred CCCceEEEEECCCCCCCcEEEEeecC----------C--CeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEe
Q 006375 148 LRPDKAWLHKLEADQSNDICLYHEKD----------D--IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL 215 (648)
Q Consensus 148 ~~~~~l~~~~l~~~~~~~~~~~~~~~----------~--~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l 215 (648)
+..+++-++- ...-+...| . .......|.|+.+-.++++...++-+||-++-...+ .+.+
T Consensus 237 ----qakl~DRdG~---~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-~qVi 308 (641)
T KOG0772|consen 237 ----QAKLLDRDGF---EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-LQVI 308 (641)
T ss_pred ----ceeEEccCCc---eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-eeEE
Confidence 2333333221 111111111 0 011235799999999988877766666655433332 3444
Q ss_pred eeccc------ceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCC-cceeEe--cCCCCcccceEEEeCCEEEEEEec
Q 006375 216 TPRVV------GVDTAASHRGNHFFITRRSDELFNSELLACPVDNTS-ETTVLI--PHRESVKLQDIQLFIDHLAVYERE 286 (648)
Q Consensus 216 ~~~~~------~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~ 286 (648)
.+... ...+.|++||.+|+-.... +.|-..+..+.. .....+ .|.....|..+.+..++-++..+
T Consensus 309 k~k~~~g~Rv~~tsC~~nrdg~~iAagc~D-----GSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR- 382 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNRDGKLIAAGCLD-----GSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR- 382 (641)
T ss_pred eeccCCCcccCceeeecCCCcchhhhcccC-----CceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc-
Confidence 33322 1345699999986544332 334444432211 111122 24444456666666665555543
Q ss_pred CCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCC---CCCEEEEEECCCCc
Q 006375 287 GGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLR---TPPSVYDYDMDMGI 356 (648)
Q Consensus 287 ~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~---~P~~~~~~d~~~~~ 356 (648)
.....+.+|++....+.+. ..+.+|.+ +.-....++++.. |+++-+|.. .++.|+-||..+-+
T Consensus 383 g~D~tLKvWDLrq~kkpL~-----~~tgL~t~-~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLN-----VRTGLPTP-FPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred cCCCceeeeeccccccchh-----hhcCCCcc-CCCCccccCCCce-EEEecccccCCCCCceEEEEecccee
Confidence 3345688888874333221 11112211 0111123345544 555555442 55678888765544
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0062 Score=65.41 Aligned_cols=199 Identities=17% Similarity=0.199 Sum_probs=111.1
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCe-eeccccC---ccceeEEecCCeEEEEEeCCCCCCceEEE
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWL 155 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~-~~~~~~~---~~~~~~WspDg~l~y~~~~~~~~~~~l~~ 155 (648)
...+....+||||+.++.+... ..+.++++.+++. +...+.+ ....+.|+|||.++.+..+ ...++.
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~----D~tiri 229 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSD-----GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD----DKTLRI 229 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCC-----CcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC----CceEEE
Confidence 3556678999999998877542 2567777766651 1112222 2456999999954444433 345788
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEeecCCEEE
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFF 234 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~dg~~l~ 234 (648)
+++..+. .-..++. ....+...+.++|+|+.|+ ... .+..++++|+.+++..+.+......+. ..++++|..|+
T Consensus 230 wd~~~~~-~~~~~l~-gH~~~v~~~~f~p~g~~i~-Sgs--~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 230 WDLKDDG-RNLKTLK-GHSTYVTSVAFSPDGNLLV-SGS--DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred eeccCCC-eEEEEec-CCCCceEEEEecCCCCEEE-Eec--CCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence 8883321 2233333 3345566889999995554 332 335678888888762334444444443 45889998665
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcc-eeEecCCCCc-ccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 235 ITRRSDELFNSELLACPVDNTSET-TVLIPHRESV-KLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
-.+. +..|.+.|+.+.... ...+...+.. .+..+.+..+..++...... ..+.+|++.
T Consensus 305 s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d-~~~~~w~l~ 364 (456)
T KOG0266|consen 305 SASY-----DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD-RTLKLWDLR 364 (456)
T ss_pred EcCC-----CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC-CeEEEEEcc
Confidence 4422 356788888763211 1122222222 23444444544333322211 356666776
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.015 Score=55.99 Aligned_cols=148 Identities=19% Similarity=0.198 Sum_probs=84.4
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc---CccceeEEecCCeEEEEEeCCCCCCceEEEEECCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~---~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
...+||+-|.+||.... +| .|.|+|+.|-.+-. .+. ....+++||+||+++.++.. ...+-.+++-.
T Consensus 27 ~~~~Fs~~G~~lAvGc~-nG----~vvI~D~~T~~iar-~lsaH~~pi~sl~WS~dgr~LltsS~----D~si~lwDl~~ 96 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCA-NG----RVVIYDFDTFRIAR-MLSAHVRPITSLCWSRDGRKLLTSSR----DWSIKLWDLLK 96 (405)
T ss_pred ceEEeccCcceeeeecc-CC----cEEEEEccccchhh-hhhccccceeEEEecCCCCEeeeecC----CceeEEEeccC
Confidence 36799999999999875 34 68889998855321 111 12456999999955555432 34577778776
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCC--cEEEEEEccccccEEEEEECCCCCceeEeeecccc---eee---eEeecCCE
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESK--KFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG---VDT---AASHRGNH 232 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg--~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~---~~~---~~s~dg~~ 232 (648)
+..-.+..| ..+.+ +..|.|-. +.++...... -++++...+. -+.|....++ ... .+.+.|++
T Consensus 97 gs~l~rirf--~spv~--~~q~hp~k~n~~va~~~~~s----p~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~y 167 (405)
T KOG1273|consen 97 GSPLKRIRF--DSPVW--GAQWHPRKRNKCVATIMEES----PVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKY 167 (405)
T ss_pred CCceeEEEc--cCccc--eeeeccccCCeEEEEEecCC----cEEEEecCCc-eeeccCCCccccccccccccccCCCCE
Confidence 632222233 22333 45566643 3333222221 4666776654 3444333222 111 26677887
Q ss_pred EEEEeccCCCCCcEEEEEeCCCC
Q 006375 233 FFITRRSDELFNSELLACPVDNT 255 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~ 255 (648)
|+.-+.. ++|..++.++.
T Consensus 168 IitGtsK-----Gkllv~~a~t~ 185 (405)
T KOG1273|consen 168 IITGTSK-----GKLLVYDAETL 185 (405)
T ss_pred EEEecCc-----ceEEEEecchh
Confidence 7644433 57888887663
|
|
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00015 Score=77.46 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=74.9
Q ss_pred EEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC-CCchhHHHHHHC-CCEEEEEccCCCCCCChhhhhccc------c
Q 006375 388 QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGK------F 459 (648)
Q Consensus 388 ~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~------~ 459 (648)
+.....+.-... -+.+ .|++|++-| -+..... .....+..|+++ |..+++...| -||++..-... .
T Consensus 13 tf~qRY~~n~~~-~~~~-gpifl~~gg-E~~~~~~~~~~~~~~~lA~~~~a~~v~lEHR---yYG~S~P~~~~s~~nL~y 86 (434)
T PF05577_consen 13 TFSQRYWVNDQY-YKPG-GPIFLYIGG-EGPIEPFWINNGFMWELAKEFGALVVALEHR---YYGKSQPFGDLSTENLRY 86 (434)
T ss_dssp EEEEEEEEE-TT---TT-SEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--T---TSTTB-TTGGGGGSTTTC
T ss_pred eEEEEEEEEhhh-cCCC-CCEEEEECC-CCccchhhhcCChHHHHHHHcCCcEEEeehh---hhcCCCCccccchhhHHh
Confidence 344454555554 2223 789998844 3221110 011234466665 9999999999 45555422111 1
Q ss_pred cCCCCcHhHHHHHHHHHHHcC-CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccc
Q 006375 460 LKKKNTFTDFIACAEYLIKNC-YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 521 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d 521 (648)
+.-++.+.|+..-++++..+. ..+..++.++|+|+||.|++++-..+|++|.++++.++++.
T Consensus 87 Lt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 87 LTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp -SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred cCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 222357899999999988653 34556999999999999999999999999999998877654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00084 Score=68.11 Aligned_cols=168 Identities=17% Similarity=0.186 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHcCCCCC--CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccc-cccccCCCCCC----------
Q 006375 467 TDFIACAEYLIKNCYCTK--EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDV-LTTMLDPTIPL---------- 533 (648)
Q Consensus 467 ~D~~~~~~~l~~~~~~d~--~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~-~~~~~~~~~~~---------- 533 (648)
-|.+.|+.+|+.+-.... -++.++|+|+||+|+..++.-.|..|.+++=.++.+-. +++.+...+-+
T Consensus 164 iD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~~~ 243 (403)
T PF11144_consen 164 IDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGEFF 243 (403)
T ss_pred HHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccccccccc
Confidence 688889999988743333 48999999999999999999999999999866554322 12221111110
Q ss_pred ----------Ccccc-cccCCCC--CHHHHHHHHcCCccccCCCC----CCCeEEEeecCCCCccCCchHHHHHHHHHhc
Q 006375 534 ----------TTAEW-EEWGDPW--KEEFYFYMKSYSPVDNVKAQ----NYPHILVTAGLNDPRVMYSEPAKFVAKLREM 596 (648)
Q Consensus 534 ----------~~~~~-~~~g~~~--~~~~~~~~~~~sp~~~~~~~----~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~ 596 (648)
....| ...++|. .++. ..++...-..++.-+ .-|-....|+..|+.+|+.+-.++++.+++.
T Consensus 244 ~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~-~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~l 322 (403)
T PF11144_consen 244 NFKNIRIYCFDKTFWTRNKNSPYYFSKAR-YIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKNL 322 (403)
T ss_pred ccCCEEEEEEeccccccCCCCccccChHH-HHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHHc
Confidence 00011 1112231 1111 233333222222211 2255778899999999999999999999999
Q ss_pred CCCCCeEEEEecC--------CCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 597 KTDDNILLFKCEL--------GAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 597 ~~~~~~~~~~~~~--------~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
|-++++.+++.+. +-.|+.+......++ .++.-+.+.+.
T Consensus 323 gfda~l~lIkdes~iDGkfIKnl~HGmgis~k~Lf~---KeLp~~lek~~ 369 (403)
T PF11144_consen 323 GFDATLHLIKDESEIDGKFIKNLEHGMGISDKALFK---KELPLMLEKLQ 369 (403)
T ss_pred CCCeEEEEecChhhccchheeccccCCCCCHHHHHH---HHhHHHHHHhh
Confidence 9998888874322 245765555444333 34555555553
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0086 Score=58.67 Aligned_cols=156 Identities=15% Similarity=0.037 Sum_probs=88.0
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
...+..+.+||||+.+|+.....+ ...|++....+.......-. ....++|+++|+++..... .....+++ +..
T Consensus 23 ~~~~~s~AvS~dg~~~A~v~~~~~--~~~L~~~~~~~~~~~~~~g~-~l~~PS~d~~g~~W~v~~~--~~~~~~~~-~~~ 96 (253)
T PF10647_consen 23 GYDVTSPAVSPDGSRVAAVSEGDG--GRSLYVGPAGGPVRPVLTGG-SLTRPSWDPDGWVWTVDDG--SGGVRVVR-DSA 96 (253)
T ss_pred CccccceEECCCCCeEEEEEEcCC--CCEEEEEcCCCcceeeccCC-ccccccccCCCCEEEEEcC--CCceEEEE-ecC
Confidence 345678999999999999983333 56899988765444332222 3456999999966655432 22222322 222
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECC---CCC-----ceeEeeec-ccc-eeeeEeec
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS---KPE-----ELRVLTPR-VVG-VDTAASHR 229 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~---~~~-----~~~~l~~~-~~~-~~~~~s~d 229 (648)
++......+-......-...+.+||||.++++.....+..+||+.-+. .+. ....+... ... ....|.++
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 221122222111111134478999999999998877777888887543 221 11122211 111 24568887
Q ss_pred CCEEEEEeccCCC
Q 006375 230 GNHFFITRRSDEL 242 (648)
Q Consensus 230 g~~l~~~~~~~~~ 242 (648)
+. |++.+...+.
T Consensus 177 ~~-L~V~~~~~~~ 188 (253)
T PF10647_consen 177 ST-LVVLGRSAGG 188 (253)
T ss_pred CE-EEEEeCCCCC
Confidence 76 5555554333
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00031 Score=70.82 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=61.0
Q ss_pred hhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh
Q 006375 426 SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 426 ~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 505 (648)
.....++++|..|.+++.|+-... .. .........+++..|++.+.+. +..++|-++|.|.||.+..++++.
T Consensus 130 s~V~~l~~~g~~vfvIsw~nPd~~-~~-----~~~~edYi~e~l~~aid~v~~i--tg~~~InliGyCvGGtl~~~ala~ 201 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWRNPDAS-LA-----AKNLEDYILEGLSEAIDTVKDI--TGQKDINLIGYCVGGTLLAAALAL 201 (445)
T ss_pred cHHHHHHHcCCceEEEeccCchHh-hh-----hccHHHHHHHHHHHHHHHHHHH--hCccccceeeEecchHHHHHHHHh
Confidence 346788899999999998753321 11 1111112225555777777765 334899999999999999888888
Q ss_pred CCCc-eeEEEecCCccccc
Q 006375 506 RPDL-FKAAVAAVPFVDVL 523 (648)
Q Consensus 506 ~p~~-~~a~v~~~~~~d~~ 523 (648)
.+.. ++.+......+|..
T Consensus 202 ~~~k~I~S~T~lts~~DF~ 220 (445)
T COG3243 202 MAAKRIKSLTLLTSPVDFS 220 (445)
T ss_pred hhhcccccceeeecchhhc
Confidence 7776 77777666656643
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.002 Score=68.86 Aligned_cols=128 Identities=20% Similarity=0.209 Sum_probs=83.8
Q ss_pred EEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCc-hhHHHHHHCCCEEEEEccCCCCCCC----hhhhh--ccccc
Q 006375 388 QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN-SSRLSLLDRGFIFAIAQIRGGGELG----RQWYE--NGKFL 460 (648)
Q Consensus 388 ~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~~~rG~g~~g----~~~~~--~~~~~ 460 (648)
.|..-+-.|.+. +++ .+..+-||+.......-. .....-+.+||+++.-| -|+.+.. ..|.. .....
T Consensus 16 ~i~fev~LP~~W---NgR--~~~~GgGG~~G~i~~~~~~~~~~~~~~~G~A~~~TD-~Gh~~~~~~~~~~~~~n~~~~~d 89 (474)
T PF07519_consen 16 NIRFEVWLPDNW---NGR--FLQVGGGGFAGGINYADGKASMATALARGYATASTD-SGHQGSAGSDDASFGNNPEALLD 89 (474)
T ss_pred eEEEEEECChhh---ccC--eEEECCCeeeCcccccccccccchhhhcCeEEEEec-CCCCCCcccccccccCCHHHHHH
Confidence 566565667644 232 445555555433322110 01234467899999999 4444332 22320 01123
Q ss_pred CCCCcHhHHHHHHHHHHHcCC-CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccc
Q 006375 461 KKKNTFTDFIACAEYLIKNCY-CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 521 (648)
Q Consensus 461 ~~~~~~~D~~~~~~~l~~~~~-~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d 521 (648)
+....+.+...+.+.|++..| ..|++-...|.|-||--++.+|.++|+.|.++|+.+|..+
T Consensus 90 fa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~ 151 (474)
T PF07519_consen 90 FAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAIN 151 (474)
T ss_pred HHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHH
Confidence 344567788888888887744 5789999999999999999999999999999999999654
|
It also includes several bacterial homologues of unknown function. |
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00022 Score=55.62 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=50.7
Q ss_pred CeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCc
Q 006375 386 GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNT 465 (648)
Q Consensus 386 g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~ 465 (648)
|.+|......|++ .+..+|+++||-...+. .|...+..|+++||.|+..|.||+|..... ....+.
T Consensus 1 G~~L~~~~w~p~~-----~~k~~v~i~HG~~eh~~--ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~-------rg~~~~ 66 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-----PPKAVVVIVHGFGEHSG--RYAHLAEFLAEQGYAVFAYDHRGHGRSEGK-------RGHIDS 66 (79)
T ss_pred CcEEEEEEecCCC-----CCCEEEEEeCCcHHHHH--HHHHHHHHHHhCCCEEEEECCCcCCCCCCc-------ccccCC
Confidence 4566666444433 14789999999543332 477778899999999999999999976421 111245
Q ss_pred HhHHHHHHHHH
Q 006375 466 FTDFIACAEYL 476 (648)
Q Consensus 466 ~~D~~~~~~~l 476 (648)
++++++-+..+
T Consensus 67 ~~~~v~D~~~~ 77 (79)
T PF12146_consen 67 FDDYVDDLHQF 77 (79)
T ss_pred HHHHHHHHHHH
Confidence 56666555443
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.015 Score=56.06 Aligned_cols=263 Identities=15% Similarity=0.114 Sum_probs=129.3
Q ss_pred EecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-----ecccc-CccceeEEecCC-eEEE
Q 006375 69 LDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-----GKPLV-GVTASVEWAGNE-ALVY 141 (648)
Q Consensus 69 ld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-----~~~~~-~~~~~~~WspDg-~l~y 141 (648)
||.+.+.. | --.+..+.||-|||+||-.... -.|++|+++.=+.. ....+ +....++|+||- .+++
T Consensus 77 l~~~~LKg-H-~~~vt~~~FsSdGK~lat~~~D-----r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv 149 (420)
T KOG2096|consen 77 LNVSVLKG-H-KKEVTDVAFSSDGKKLATISGD-----RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVV 149 (420)
T ss_pred hhhhhhhc-c-CCceeeeEEcCCCceeEEEeCC-----ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEE
Confidence 45555543 2 2357789999999999977642 36888888752211 11111 123458899998 6665
Q ss_pred EEeCCCCCCceEEEEECCCC--CC-------CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCce
Q 006375 142 ITMDEILRPDKAWLHKLEAD--QS-------NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL 212 (648)
Q Consensus 142 ~~~~~~~~~~~l~~~~l~~~--~~-------~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~ 212 (648)
... +...|+.+.+... .+ .|-+-|++....-.+++.....+++|. ++ ..++.|.++++.+.. +
T Consensus 150 ~~~----~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im-sa--s~dt~i~lw~lkGq~-L 221 (420)
T KOG2096|consen 150 SVK----RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIM-SA--SLDTKICLWDLKGQL-L 221 (420)
T ss_pred EEc----cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEE-Ee--cCCCcEEEEecCCce-e
Confidence 543 2234665554321 11 122223322222233444444555554 22 234678899998554 4
Q ss_pred eEeeecc-cceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee---EecCCC-CcccceEEEeCC-EEEEEEec
Q 006375 213 RVLTPRV-VGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV---LIPHRE-SVKLQDIQLFID-HLAVYERE 286 (648)
Q Consensus 213 ~~l~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~-~l~~~~~~ 286 (648)
.-+..+. .+....+||+|+.|+...-. +..+++-.=....+..+. ++.-.. ...+..+.+.++ ...+...+
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gFT---pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGFT---PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecCC---CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence 4443332 33456699999976655433 344555433322122211 222111 122445555554 45667778
Q ss_pred CCeeEEEEEEcCC-CCCcccccCCCceeecCCCeeeee-CCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 287 GGLQKITTYRLPA-VGEPLKSLQGGKSVEFIDPVYSID-PSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 287 ~~~~~l~v~~~~~-~g~~~~~l~~~~~i~~~~~~~~v~-~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+|.-++|=.++.- .++.+..|-.. .+.+- .+++-+ -+..+++++.+.+++.|. +..|..++|+
T Consensus 299 DG~wriwdtdVrY~~~qDpk~Lk~g-~~pl~-aag~~p~RL~lsP~g~~lA~s~gs~-----l~~~~se~g~ 363 (420)
T KOG2096|consen 299 DGKWRIWDTDVRYEAGQDPKILKEG-SAPLH-AAGSEPVRLELSPSGDSLAVSFGSD-----LKVFASEDGK 363 (420)
T ss_pred CCcEEEeeccceEecCCCchHhhcC-Ccchh-hcCCCceEEEeCCCCcEEEeecCCc-----eEEEEcccCc
Confidence 8876665333221 11211111111 01110 000100 134457777776665543 6666666665
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.006 Score=59.71 Aligned_cols=199 Identities=11% Similarity=0.065 Sum_probs=111.3
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc---ccCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP---LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~---~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
..+..++|.+ ..++|++-... ..|+++|-....+.... -.+ ...++|-|-+ .-+-+..... -=+|..
T Consensus 99 ~dlr~~aWhq--H~~~fava~nd---dvVriy~ksst~pt~Lks~sQrn-vtclawRPlsaselavgCr~g---IciW~~ 169 (445)
T KOG2139|consen 99 IDLRGVAWHQ--HIIAFAVATND---DVVRIYDKSSTCPTKLKSVSQRN-VTCLAWRPLSASELAVGCRAG---ICIWSD 169 (445)
T ss_pred cceeeEeech--hhhhhhhhccC---cEEEEeccCCCCCceecchhhcc-eeEEEeccCCcceeeeeecce---eEEEEc
Confidence 5677888888 55666654332 36777776553332211 122 3459999988 4333333211 001110
Q ss_pred E--------CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEee-eccccee-eeE
Q 006375 157 K--------LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-PRVVGVD-TAA 226 (648)
Q Consensus 157 ~--------l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~-~~~~~~~-~~~ 226 (648)
+ +..+.+....++..+.........|.+||..++ +.+.+++.|.++|.+++. -++|. .+.+++. ..|
T Consensus 170 s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~--tAS~gsssi~iWdpdtg~-~~pL~~~glgg~slLkw 246 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILV--TASFGSSSIMIWDPDTGQ-KIPLIPKGLGGFSLLKW 246 (445)
T ss_pred CcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEe--ecccCcceEEEEcCCCCC-cccccccCCCceeeEEE
Confidence 0 001111223344444434455679999997765 455677889999999987 45555 3445553 569
Q ss_pred eecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 227 SHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 227 s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
||||++|+..+-+ ..++|+-..- ....++|++..+ .+++..|+..+-.+.+.--+.+.++....+
T Consensus 247 SPdgd~lfaAt~d---avfrlw~e~q-~wt~erw~lgsg---rvqtacWspcGsfLLf~~sgsp~lysl~f~ 311 (445)
T KOG2139|consen 247 SPDGDVLFAATCD---AVFRLWQENQ-SWTKERWILGSG---RVQTACWSPCGSFLLFACSGSPRLYSLTFD 311 (445)
T ss_pred cCCCCEEEEeccc---ceeeeehhcc-cceecceeccCC---ceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence 9999987666554 2366663221 123456766554 366666665543333334466777766655
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0026 Score=55.63 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEe---cCCcccccccccCCCCCCCcccccccCC
Q 006375 467 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA---AVPFVDVLTTMLDPTIPLTTAEWEEWGD 543 (648)
Q Consensus 467 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~---~~~~~d~~~~~~~~~~~~~~~~~~~~g~ 543 (648)
....+-++-++.+. .|+ .++|+|.|.||+.+.++..+.- +++++. ..|.-++..+...+..|++..+|. -.
T Consensus 43 ~~a~~ele~~i~~~-~~~-~p~ivGssLGGY~At~l~~~~G--irav~~NPav~P~e~l~gylg~~en~ytg~~y~--le 116 (191)
T COG3150 43 QQALKELEKAVQEL-GDE-SPLIVGSSLGGYYATWLGFLCG--IRAVVFNPAVRPYELLTGYLGRPENPYTGQEYV--LE 116 (191)
T ss_pred HHHHHHHHHHHHHc-CCC-CceEEeecchHHHHHHHHHHhC--ChhhhcCCCcCchhhhhhhcCCCCCCCCcceEE--ee
Confidence 45555555555543 232 3999999999999999998753 555542 233333333333344455544331 00
Q ss_pred CCCHHHHHHHHcCCccccCCCCCCCeEEEeecCC-CCccCCchHHHHHHHHH
Q 006375 544 PWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLN-DPRVMYSEPAKFVAKLR 594 (648)
Q Consensus 544 ~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~-D~~v~~~~~~~~~~~l~ 594 (648)
+ .....+. ..+++.++-|..|++.... |.+..+.++..++....
T Consensus 117 ~---~hI~~l~----~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~~ 161 (191)
T COG3150 117 S---RHIATLC----VLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPCY 161 (191)
T ss_pred h---hhHHHHH----HhhccccCCCcEEEeecccccHHHHHHHHHHHhhhhh
Confidence 1 1111111 1234455556566665555 88776665555554443
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0084 Score=61.12 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=100.7
Q ss_pred HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecC-CcccccccccC--CCCC-CCccccccc---CC
Q 006375 471 ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV-PFVDVLTTMLD--PTIP-LTTAEWEEW---GD 543 (648)
Q Consensus 471 ~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~-~~~d~~~~~~~--~~~~-~~~~~~~~~---g~ 543 (648)
++-+++.+....+.++.+|.|.|==|..+..+++ ...+++|+|..+ +++|+...+.. .... .+...+..| |-
T Consensus 158 ~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi 236 (367)
T PF10142_consen 158 AVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGI 236 (367)
T ss_pred HHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCc
Confidence 3334445545567899999999999998877777 445788877654 33333222100 0000 001111111 22
Q ss_pred C---CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchH
Q 006375 544 P---WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRF 620 (648)
Q Consensus 544 ~---~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~ 620 (648)
. ..++..+.+.-.+|+...++.+.| -||+.|.+|+...+..+.-|+..|.. ++.+..+ ++++|.... .
T Consensus 237 ~~~l~tp~f~~L~~ivDP~~Y~~rL~~P-K~ii~atgDeFf~pD~~~~y~d~L~G---~K~lr~v---PN~~H~~~~--~ 307 (367)
T PF10142_consen 237 TQQLDTPEFDKLMQIVDPYSYRDRLTMP-KYIINATGDEFFVPDSSNFYYDKLPG---EKYLRYV---PNAGHSLIG--S 307 (367)
T ss_pred hhhcCCHHHHHHHHhcCHHHHHHhcCcc-EEEEecCCCceeccCchHHHHhhCCC---CeeEEeC---CCCCcccch--H
Confidence 2 345555566678999999888998 99999999999999999999999984 3223333 489996543 2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCC
Q 006375 621 ERLREAAFTYTFLMRALSMLPSV 643 (648)
Q Consensus 621 ~~~~~~~~~~~fl~~~l~~~~~~ 643 (648)
. ....+.+|+...+...+-|
T Consensus 308 ~---~~~~l~~f~~~~~~~~~lP 327 (367)
T PF10142_consen 308 D---VVQSLRAFYNRIQNGRPLP 327 (367)
T ss_pred H---HHHHHHHHHHHHHcCCCCC
Confidence 2 2224578888866554444
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.012 Score=60.23 Aligned_cols=195 Identities=13% Similarity=0.136 Sum_probs=121.9
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-----ccCccceeEEecCC---eEEEEEeCCCCCCceEEEE
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-----LVGVTASVEWAGNE---ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-----~~~~~~~~~WspDg---~l~y~~~~~~~~~~~l~~~ 156 (648)
-++||-|.+++|+.+ | ..|+|.++ |+..-..+ ..+ ...++|||-| .|+|-.....+.+..+..+
T Consensus 136 ~~k~s~~D~y~ARvv---~---~sl~i~e~-t~n~~~~p~~~lr~~g-i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~ 207 (561)
T COG5354 136 VLKFSIDDKYVARVV---G---SSLYIHEI-TDNIEEHPFKNLRPVG-ILDFSISPEGNHDELAYWTPEKLNKPAMVRIL 207 (561)
T ss_pred eeeeeecchhhhhhc---c---CeEEEEec-CCccccCchhhccccc-eeeEEecCCCCCceEEEEccccCCCCcEEEEE
Confidence 468899999999885 3 37888887 55443222 222 3569999974 6677665445667777777
Q ss_pred ECCCCCCCc-EEEEeecCCCeEEEEEeCCCCcEEEEEEccc--------cccEEEEEECCCCCceeEeeecc-cceeeeE
Q 006375 157 KLEADQSND-ICLYHEKDDIYSLGLQASESKKFLFIASESK--------ITRFVFYLDVSKPEELRVLTPRV-VGVDTAA 226 (648)
Q Consensus 157 ~l~~~~~~~-~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~--------~~~~l~~~dl~~~~~~~~l~~~~-~~~~~~~ 226 (648)
.+..+.... ..++... .+.+.|.+.|++|++...+. +.++||++++.... +....... .-.++.|
T Consensus 208 sIp~~s~l~tk~lfk~~----~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W 282 (561)
T COG5354 208 SIPKNSVLVTKNLFKVS----GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTW 282 (561)
T ss_pred EccCCCeeeeeeeEeec----ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeee
Confidence 777442111 1222221 24578999999999875432 34799999998665 33222222 2356779
Q ss_pred eecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 227 SHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 227 s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
+|+++.+.+.+... ...+...|+.+ ..+..+|++..- -..|++...++++..-.+-...+.+++..
T Consensus 283 ~p~S~~F~vi~g~~---pa~~s~~~lr~--Nl~~~~Pe~~rN-T~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 283 EPLSSRFAVISGYM---PASVSVFDLRG--NLRFYFPEQKRN-TIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred cccCCceeEEeccc---ccceeeccccc--ceEEecCCcccc-cccccCcccEEEEecCCccccceEEeccC
Confidence 99999999887532 23566667654 233355555432 33466667777776665555566676655
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0017 Score=72.10 Aligned_cols=142 Identities=16% Similarity=0.142 Sum_probs=78.5
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC----------CCee-e------ccccC---ccceeEEecCCeE
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET----------GTPV-G------KPLVG---VTASVEWAGNEAL 139 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~----------g~~~-~------~~~~~---~~~~~~WspDg~l 139 (648)
...+..++|||||++||..+| ..-|.||+-+. |... . -.+.+ -...+.|+||+.+
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSD-----D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSD-----DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred cCceeEEEECCCCCeEeeccC-----cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence 457788999999999998655 34566666552 1110 0 01111 1346999999944
Q ss_pred EEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc
Q 006375 140 VYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV 219 (648)
Q Consensus 140 ~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~ 219 (648)
+.+..- ...|..++..+- +...++..+ ....-++.|.|-|+|++-++.++ .|-++.+.+=.-.+.++...
T Consensus 144 lvS~s~----DnsViiwn~~tF--~~~~vl~~H-~s~VKGvs~DP~Gky~ASqsdDr---tikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 144 LVSVSL----DNSVIIWNAKTF--ELLKVLRGH-QSLVKGVSWDPIGKYFASQSDDR---TLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred EEEecc----cceEEEEccccc--eeeeeeecc-cccccceEECCccCeeeeecCCc---eEEEEEcccceeeEeeccch
Confidence 444321 233666666554 334444433 33444789999999998655433 23333332211022333222
Q ss_pred c---ce----eeeEeecCCEEEEE
Q 006375 220 V---GV----DTAASHRGNHFFIT 236 (648)
Q Consensus 220 ~---~~----~~~~s~dg~~l~~~ 236 (648)
. .. ...|||||++|...
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred hhCCCcceeeecccCCCcCeecch
Confidence 1 11 23599999977543
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.001 Score=60.27 Aligned_cols=128 Identities=13% Similarity=0.154 Sum_probs=78.3
Q ss_pred hHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC
Q 006375 427 SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR 506 (648)
Q Consensus 427 ~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 506 (648)
.+..|+++|+.|+.+|-+ +-|.. ....+..-.|+...+++..++- ..+++.++|.|.|+-++-.+.++-
T Consensus 21 ~a~~l~~~G~~VvGvdsl------~Yfw~---~rtP~~~a~Dl~~~i~~y~~~w--~~~~vvLiGYSFGADvlP~~~nrL 89 (192)
T PF06057_consen 21 IAEALAKQGVPVVGVDSL------RYFWS---ERTPEQTAADLARIIRHYRARW--GRKRVVLIGYSFGADVLPFIYNRL 89 (192)
T ss_pred HHHHHHHCCCeEEEechH------HHHhh---hCCHHHHHHHHHHHHHHHHHHh--CCceEEEEeecCCchhHHHHHhhC
Confidence 357889999999999964 11111 1222345678888888777663 348999999999999888888887
Q ss_pred CC----ceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCc
Q 006375 507 PD----LFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPR 580 (648)
Q Consensus 507 p~----~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~ 580 (648)
|. .++.+++.+|-... .+. + ....| +|.+... .++.+...++++...+++++.|.+|.-
T Consensus 90 p~~~r~~v~~v~Ll~p~~~~-dFe----i--hv~~w--lg~~~~~------~~~~~~pei~~l~~~~v~CiyG~~E~d 152 (192)
T PF06057_consen 90 PAALRARVAQVVLLSPSTTA-DFE----I--HVSGW--LGMGGDD------AAYPVIPEIAKLPPAPVQCIYGEDEDD 152 (192)
T ss_pred CHHHHhheeEEEEeccCCcc-eEE----E--Ehhhh--cCCCCCc------ccCCchHHHHhCCCCeEEEEEcCCCCC
Confidence 76 45556666553211 110 0 01111 1222111 123444455566444599999998875
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.091 Score=61.00 Aligned_cols=194 Identities=10% Similarity=0.066 Sum_probs=104.8
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCC----e----e-eccccCccceeEEecCC-eEEEEEeCCCCCC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT----P----V-GKPLVGVTASVEWAGNE-ALVYITMDEILRP 150 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~----~----~-~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~ 150 (648)
-.+..+.|||||++||-... ...|.||++.+.. . . ..........++|++.. .++.+... .
T Consensus 484 ~~V~~i~fs~dg~~latgg~-----D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~----D 554 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGV-----NKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNF----E 554 (793)
T ss_pred CcEEEEEECCCCCEEEEEeC-----CCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeC----C
Confidence 34678899999999886542 2378888875421 1 0 00111223458998864 44444432 2
Q ss_pred ceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCC-CCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeE-ee
Q 006375 151 DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAA-SH 228 (648)
Q Consensus 151 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~-s~ 228 (648)
..|.++++.++ +....+..+. .....+.|+| |+..|+..+ .+..|.++|+.++.....+..........| ++
T Consensus 555 g~v~lWd~~~~--~~~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs---~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~ 628 (793)
T PLN00181 555 GVVQVWDVARS--QLVTEMKEHE-KRVWSIDYSSADPTLLASGS---DDGSVKLWSINQGVSIGTIKTKANICCVQFPSE 628 (793)
T ss_pred CeEEEEECCCC--eEEEEecCCC-CCEEEEEEcCCCCCEEEEEc---CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCC
Confidence 35778888765 2333343332 3345778886 677665432 235688889887652222222111122335 34
Q ss_pred cCCEEEEEeccCCCCCcEEEEEeCCCCCccee-EecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 229 RGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 229 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
+|..|+..+. +..|..+|+........ +..+.. .+..+.+.....++....++ .+.+|++.
T Consensus 629 ~g~~latgs~-----dg~I~iwD~~~~~~~~~~~~~h~~--~V~~v~f~~~~~lvs~s~D~--~ikiWd~~ 690 (793)
T PLN00181 629 SGRSLAFGSA-----DHKVYYYDLRNPKLPLCTMIGHSK--TVSYVRFVDSSTLVSSSTDN--TLKLWDLS 690 (793)
T ss_pred CCCEEEEEeC-----CCeEEEEECCCCCccceEecCCCC--CEEEEEEeCCCEEEEEECCC--EEEEEeCC
Confidence 5665554433 24788888865322211 222322 34556665444445555554 47777775
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.011 Score=61.99 Aligned_cols=198 Identities=15% Similarity=0.092 Sum_probs=120.7
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-c--cCccceeEEecCCeEEEEEeCCCCCCceEEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-L--VGVTASVEWAGNEALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~--~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~ 157 (648)
..+..+.|+|+|++||..... ..|.|+|++..+.+... . ....+.++|. +.++-+. .+...+..++
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssG----sr~~~I~~~d 286 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSG----SRDGKILNHD 286 (484)
T ss_pred CceEEEEECCCCCEEEEeecC-----CeEEEEehhhccccccccCCcCceeEEEecc--CceEEEe----cCCCcEEEEE
Confidence 467788999999999998652 37899999887655432 2 1235678997 3232222 2334466666
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEeecCCEEEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFIT 236 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~ 236 (648)
+...+..-. ....+ ..-..+..|++|+++++ ..+.++.++++|..+......+......+. ..|+|.-.-|+.+
T Consensus 287 vR~~~~~~~-~~~~H-~qeVCgLkws~d~~~lA---SGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAs 361 (484)
T KOG0305|consen 287 VRISQHVVS-TLQGH-RQEVCGLKWSPDGNQLA---SGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLAT 361 (484)
T ss_pred Eecchhhhh-hhhcc-cceeeeeEECCCCCeec---cCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEE
Confidence 665532212 22222 23455789999999986 445568899999865553344444444433 4588876666554
Q ss_pred eccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEE-EEEEecCCeeEEEEEEcCC
Q 006375 237 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHL-AVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~l~v~~~~~ 299 (648)
.. |.....|...+..++...+ .-.....+..+.|.+.+- ++...-....++.||.++.
T Consensus 362 GG--Gs~D~~i~fwn~~~g~~i~---~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 362 GG--GSADRCIKFWNTNTGARID---SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred cC--CCcccEEEEEEcCCCcEec---ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence 33 3455677777876532222 223345688899988762 3333333455788888874
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00058 Score=66.96 Aligned_cols=112 Identities=14% Similarity=0.118 Sum_probs=70.1
Q ss_pred ceEEEecccccC----CCCc-EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC---ccceeEEecC
Q 006375 65 EHLILDENVKAE----GRGF-YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGN 136 (648)
Q Consensus 65 ~~~lld~n~~~~----~~~~-~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~WspD 136 (648)
.-.|.+|++... -.|. ..+....+||||++||-++- ...|.+|+-.+|+.+. ++.+ ....++||.|
T Consensus 347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF-----DkSVkLW~g~tGk~la-sfRGHv~~VYqvawsaD 420 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF-----DKSVKLWDGRTGKFLA-SFRGHVAAVYQVAWSAD 420 (480)
T ss_pred eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec-----ccceeeeeCCCcchhh-hhhhccceeEEEEeccC
Confidence 345566666541 1222 34568899999999997654 2468999999999875 3332 2456999999
Q ss_pred CeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeec-CCCeEEEEEeCCCCcEEE
Q 006375 137 EALVYITMDEILRPDKAWLHKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLF 190 (648)
Q Consensus 137 g~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~s~Dg~~l~ 190 (648)
++|+.+...+ ..|-.+++.+. ++.++-+ ...-.+.+.|||||+.++
T Consensus 421 sRLlVS~SkD----sTLKvw~V~tk----Kl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 421 SRLLVSGSKD----STLKVWDVRTK----KLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred ccEEEEcCCC----ceEEEEEeeee----eecccCCCCCceEEEEEecCCCceee
Confidence 9888876532 22444455443 2222111 111233578999999875
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.092 Score=52.42 Aligned_cols=263 Identities=17% Similarity=0.202 Sum_probs=127.9
Q ss_pred ceEEEecccccCCCCcEE---EeeEEeCCCCCEEEEEEe-----CCCCeEEEEEEEECCCCCeeec-cccC--------c
Q 006375 65 EHLILDENVKAEGRGFYS---VGCFQVSPDNKLVAYAED-----TKGDEIYTVYVIDIETGTPVGK-PLVG--------V 127 (648)
Q Consensus 65 ~~~lld~n~~~~~~~~~~---~~~~~~SPDG~~la~~~~-----~~G~e~~~l~v~dl~~g~~~~~-~~~~--------~ 127 (648)
...++|.++..- .|... ++++.+||||+.+..... ..|...--|-++|.+|=.+..+ .++. .
T Consensus 18 rv~viD~d~~k~-lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~ 96 (342)
T PF06433_consen 18 RVYVIDADSGKL-LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY 96 (342)
T ss_dssp EEEEEETTTTEE-EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--
T ss_pred eEEEEECCCCcE-EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccc
Confidence 356677665432 23322 247889999999886531 2343334588899998655422 2221 1
Q ss_pred cceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEEC
Q 006375 128 TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV 206 (648)
Q Consensus 128 ~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl 206 (648)
...++.|+|| ++++.... -...|-.+|+... +.+-+-+-+.+.. +..+...++..+ +. .+.--.+.+|.
T Consensus 97 ~~~~~ls~dgk~~~V~N~T---Pa~SVtVVDl~~~----kvv~ei~~PGC~~-iyP~~~~~F~~l-C~-DGsl~~v~Ld~ 166 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFT---PATSVTVVDLAAK----KVVGEIDTPGCWL-IYPSGNRGFSML-CG-DGSLLTVTLDA 166 (342)
T ss_dssp GGGEEE-TTSSEEEEEEES---SSEEEEEEETTTT----EEEEEEEGTSEEE-EEEEETTEEEEE-ET-TSCEEEEEETS
T ss_pred ccceEEccCCcEEEEEccC---CCCeEEEEECCCC----ceeeeecCCCEEE-EEecCCCceEEE-ec-CCceEEEEECC
Confidence 3458899999 55444332 2345778888764 2333333355542 222332233221 12 12222333443
Q ss_pred CCCCceeEeee---cccc---eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCc---cee-EecCC---CC-----c
Q 006375 207 SKPEELRVLTP---RVVG---VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSE---TTV-LIPHR---ES-----V 268 (648)
Q Consensus 207 ~~~~~~~~l~~---~~~~---~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~---~~~-~~~~~---~~-----~ 268 (648)
++.. .+.-++ .... ....++.++.+++|.|-. ++|+.+++++... ..| +++.. .+ .
T Consensus 167 ~Gk~-~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~-----G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 167 DGKE-AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYE-----GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp TSSE-EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTT-----SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred CCCE-eEeeccccCCCCcccccccceECCCCeEEEEecC-----CEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence 3332 222111 1111 112355677889998775 4799999876321 123 22211 11 2
Q ss_pred ccceEEEeCCEEEEEEecC-------CeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeC
Q 006375 269 KLQDIQLFIDHLAVYEREG-------GLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSL 341 (648)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~-------~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~ 341 (648)
++.++....+++++.-..+ +..++|++++.+ ++.+ .++.++.+..+|. .+-+..-++|..+.
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv------~Ri~l~~~~~Si~---Vsqd~~P~L~~~~~- 309 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRV------ARIPLEHPIDSIA---VSQDDKPLLYALSA- 309 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEE------EEEEEEEEESEEE---EESSSS-EEEEEET-
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEE------EEEeCCCccceEE---EccCCCcEEEEEcC-
Confidence 2233333446776654332 235789888875 2222 2444443332332 22344445555543
Q ss_pred CCCCEEEEEECCCCc
Q 006375 342 RTPPSVYDYDMDMGI 356 (648)
Q Consensus 342 ~~P~~~~~~d~~~~~ 356 (648)
.-..++.+|..+|+
T Consensus 310 -~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 310 -GDGTLDVYDAATGK 323 (342)
T ss_dssp -TTTEEEEEETTT--
T ss_pred -CCCeEEEEeCcCCc
Confidence 33679999999998
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0034 Score=58.87 Aligned_cols=212 Identities=20% Similarity=0.198 Sum_probs=109.7
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCC-----CEEEEEccCCCCCCChhhhhccc-------ccCCCCcHhH----
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRG-----FIFAIAQIRGGGELGRQWYENGK-------FLKKKNTFTD---- 468 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G-----~~v~~~~~rG~g~~g~~~~~~~~-------~~~~~~~~~D---- 468 (648)
..| .+++||..|...+ +......+++++ -.++.++.-|+-..-........ .+.+.....|
T Consensus 45 ~iP-TIfIhGsgG~asS--~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w 121 (288)
T COG4814 45 AIP-TIFIHGSGGTASS--LNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW 121 (288)
T ss_pred ccc-eEEEecCCCChhH--HHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence 345 4577885555433 344455555554 45677776664321111111100 1122223333
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC------CCceeEEEecCCcccccccccCCCCCCCcccccccC
Q 006375 469 FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR------PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWG 542 (648)
Q Consensus 469 ~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g 542 (648)
+..++.||.++..+ .++-++||||||......+..+ |. ++..|+..+..+.-....++++ + +...-+
T Consensus 122 lk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~-lnK~V~l~gpfN~~~l~~de~v--~--~v~~~~ 194 (288)
T COG4814 122 LKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPP-LNKLVSLAGPFNVGNLVPDETV--T--DVLKDG 194 (288)
T ss_pred HHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcc-hhheEEecccccccccCCCcch--h--eeeccC
Confidence 45688899988765 7899999999999887777654 43 4555555544441111111111 0 110012
Q ss_pred CC-CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCC------ccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccC
Q 006375 543 DP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDP------RVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 615 (648)
Q Consensus 543 ~~-~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~------~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~ 615 (648)
.+ ..-..++++... +..+.+ +. -+|++.|+-|+ .||...++-.+.-+..+++....-+++.. ++-|.-
T Consensus 195 ~~~~~t~y~~y~~~n--~k~v~~-~~-evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk-~a~Hs~ 269 (288)
T COG4814 195 PGLIKTPYYDYIAKN--YKKVSP-NT-EVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGK-DARHSK 269 (288)
T ss_pred ccccCcHHHHHHHhc--ceeCCC-Cc-EEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCC-cchhhc
Confidence 11 122233333211 111111 34 38999998654 78888888877777766655544455543 678865
Q ss_pred CCchHHHHHHHHHHHHHHH
Q 006375 616 KSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 616 ~~~~~~~~~~~~~~~~fl~ 634 (648)
..+.....+ .+..||.
T Consensus 270 lhen~~v~~---yv~~FLw 285 (288)
T COG4814 270 LHENPTVAK---YVKNFLW 285 (288)
T ss_pred cCCChhHHH---HHHHHhh
Confidence 544444333 3456664
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.14 Score=49.50 Aligned_cols=243 Identities=12% Similarity=0.075 Sum_probs=131.3
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-ccc--CccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV--GVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~--~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
.+..+.+|+||..|+-..+ + -.|.++|..+|+.+.. .-. ++. -+.|.... .+++.+. .....|.+..
T Consensus 16 ~i~sl~fs~~G~~litss~-d----Dsl~LYd~~~g~~~~ti~skkyG~~-~~~Fth~~~~~i~sSt---k~d~tIryLs 86 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSE-D----DSLRLYDSLSGKQVKTINSKKYGVD-LACFTHHSNTVIHSST---KEDDTIRYLS 86 (311)
T ss_pred ceeEEEecCCCCEEEEecC-C----CeEEEEEcCCCceeeEeeccccccc-EEEEecCCceEEEccC---CCCCceEEEE
Confidence 4567899999999887443 2 3799999999887642 112 333 37787666 7777654 3345688888
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEe
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITR 237 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~ 237 (648)
+-+. +-...|..+.. -..++..+|-+..++ ++ .-+..|+++|+...+ .+-+..........++|.|-.++...
T Consensus 87 l~dN--kylRYF~GH~~-~V~sL~~sP~~d~Fl-S~--S~D~tvrLWDlR~~~-cqg~l~~~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 87 LHDN--KYLRYFPGHKK-RVNSLSVSPKDDTFL-SS--SLDKTVRLWDLRVKK-CQGLLNLSGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred eecC--ceEEEcCCCCc-eEEEEEecCCCCeEE-ec--ccCCeEEeeEecCCC-CceEEecCCCcceeECCCCcEEEEec
Confidence 8876 45566665533 345778888775443 22 233568888988665 22222222223345788884333332
Q ss_pred ccCCCCCcEEEEEeCCCC--Cccee-EecCCCCcccce--EEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCce
Q 006375 238 RSDELFNSELLACPVDNT--SETTV-LIPHRESVKLQD--IQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKS 312 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~--~~~~~-~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~ 312 (648)
.. . .|-.+|+... +..+. .+.......... |+.+|+.+++.... +.+++++.=. |.... .
T Consensus 160 ~~---~--~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~---s~~~~lDAf~-G~~~~------t 224 (311)
T KOG1446|consen 160 GS---E--LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA---SFIYLLDAFD-GTVKS------T 224 (311)
T ss_pred CC---C--eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---CcEEEEEccC-CcEee------e
Confidence 22 1 5666676532 23332 233222222333 44555566655543 3455554321 33211 1
Q ss_pred eecCCCeeeee-CCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEEE
Q 006375 313 VEFIDPVYSID-PSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVL 359 (648)
Q Consensus 313 i~~~~~~~~v~-~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~ 359 (648)
.........++ +....||+.- ++..+ .-++++.|++++|+...
T Consensus 225 fs~~~~~~~~~~~a~ftPds~F-vl~gs---~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSKF-VLSGS---DDGTIHVWNLETGKKVA 268 (311)
T ss_pred EeeccCCCCcceeEEECCCCcE-EEEec---CCCcEEEEEcCCCcEee
Confidence 11110011111 1334567773 33333 23679999999998543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.017 Score=58.50 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=100.1
Q ss_pred EEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccccCc-cceeEEecCC-eEEEEE
Q 006375 67 LILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGV-TASVEWAGNE-ALVYIT 143 (648)
Q Consensus 67 ~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~~~~-~~~~~WspDg-~l~y~~ 143 (648)
.|-|.|.-... .-.+..++|.|.-..|. +...+| ..+||-+|-++...++ ..+... .....++|+| ..++++
T Consensus 202 rlkDaNa~~ps--~~~I~sv~FHp~~plll-vaG~d~--~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s 276 (514)
T KOG2055|consen 202 RLKDANAAHPS--HGGITSVQFHPTAPLLL-VAGLDG--TLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS 276 (514)
T ss_pred eecccccCCcC--cCCceEEEecCCCceEE-EecCCC--cEEEEEecCccChhheeeeeccCccceeeecCCCceEEEec
Confidence 45666765443 34567788888766544 444445 4556655554444332 122332 3458899999 566664
Q ss_pred eCCCCCCceEEEEECCCCCCCcE-EEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-
Q 006375 144 MDEILRPDKAWLHKLEADQSNDI-CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG- 221 (648)
Q Consensus 144 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~- 221 (648)
. +..-+|.+|+.+.+.... .++... ....-.+.+|+|+++|++..+ ...|+++...+++ +.--.+-.+.
T Consensus 277 ~----rrky~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~---~G~I~lLhakT~e-li~s~KieG~v 347 (514)
T KOG2055|consen 277 G----RRKYLYSYDLETAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGN---NGHIHLLHAKTKE-LITSFKIEGVV 347 (514)
T ss_pred c----cceEEEEeeccccccccccCCCCcc-cchhheeEecCCCCeEEEccc---CceEEeehhhhhh-hhheeeeccEE
Confidence 3 333488899987632211 122111 233445788999999987643 4679999988876 2111111111
Q ss_pred eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCC
Q 006375 222 VDTAASHRGNHFFITRRSDELFNSELLACPVDNT 255 (648)
Q Consensus 222 ~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~ 255 (648)
....|+.||+.|+..... ++|+..|+...
T Consensus 348 ~~~~fsSdsk~l~~~~~~-----GeV~v~nl~~~ 376 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGT-----GEVYVWNLRQN 376 (514)
T ss_pred eeEEEecCCcEEEEEcCC-----ceEEEEecCCc
Confidence 234588899887766443 48999999764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.043 Score=52.93 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=89.1
Q ss_pred CceEEEecccccCC----CCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-
Q 006375 64 PEHLILDENVKAEG----RGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE- 137 (648)
Q Consensus 64 ~~~~lld~n~~~~~----~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg- 137 (648)
+..|+.|..++..+ .-...+.++.||+||++|.-++. ...|.+||+..|..+.. .++.......|.|-.
T Consensus 45 G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~-----D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~ 119 (405)
T KOG1273|consen 45 GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR-----DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKR 119 (405)
T ss_pred CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC-----CceeEEEeccCCCceeEEEccCccceeeeccccC
Confidence 55778887776421 12457889999999999875543 34789999999986643 445445558898876
Q ss_pred -eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEE---EeCCCCcEEEEEEccccccEEEEEECCCCC--c
Q 006375 138 -ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL---QASESKKFLFIASESKITRFVFYLDVSKPE--E 211 (648)
Q Consensus 138 -~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~--~ 211 (648)
..+.+-.+.. -+..+++.+ ....+-...+....... .+.+-|++|+.. +++ ..|-+++.++-+ .
T Consensus 120 n~~va~~~~~s-----p~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG-tsK--Gkllv~~a~t~e~va 189 (405)
T KOG1273|consen 120 NKCVATIMEES-----PVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITG-TSK--GKLLVYDAETLECVA 189 (405)
T ss_pred CeEEEEEecCC-----cEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEe-cCc--ceEEEEecchheeee
Confidence 3333333221 234444443 12222211111111122 267789988743 222 456777777755 1
Q ss_pred eeEeeecccceeeeEeecCCEEEEEecc
Q 006375 212 LRVLTPRVVGVDTAASHRGNHFFITRRS 239 (648)
Q Consensus 212 ~~~l~~~~~~~~~~~s~dg~~l~~~~~~ 239 (648)
.-+++.-..--...++..|+.|++-+.+
T Consensus 190 s~rits~~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 190 SFRITSVQAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred eeeechheeeeEEEEeccCcEEEEecCC
Confidence 1122211111123477788877666553
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.13 Score=50.70 Aligned_cols=113 Identities=15% Similarity=0.255 Sum_probs=77.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec---cccCccceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~---~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
++....||.||.+||=. +-+| .|.|++..+|...-. ...++.. +.|.|-+.|++....+ ..||.+.+
T Consensus 108 SVt~~~FshdgtlLATG-dmsG----~v~v~~~stg~~~~~~~~e~~dieW-l~WHp~a~illAG~~D----GsvWmw~i 177 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATG-DMSG----KVLVFKVSTGGEQWKLDQEVEDIEW-LKWHPRAHILLAGSTD----GSVWMWQI 177 (399)
T ss_pred ceEEEEEccCceEEEec-CCCc----cEEEEEcccCceEEEeecccCceEE-EEecccccEEEeecCC----CcEEEEEC
Confidence 66788999999999832 3334 789999999876532 2233333 7889987555555433 35999999
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
... ....++..+...... -.+.||||.++.... +.-|.++++.++.
T Consensus 178 p~~--~~~kv~~Gh~~~ct~-G~f~pdGKr~~tgy~---dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 178 PSQ--ALCKVMSGHNSPCTC-GEFIPDGKRILTGYD---DGTIIVWNPKTGQ 223 (399)
T ss_pred CCc--ceeeEecCCCCCccc-ccccCCCceEEEEec---CceEEEEecCCCc
Confidence 885 355666665444332 357999999986544 4568888988887
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0074 Score=57.95 Aligned_cols=197 Identities=15% Similarity=0.177 Sum_probs=102.3
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-------c---cCccceeEEecCC-eEEEEEeCCCCCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-------L---VGVTASVEWAGNE-ALVYITMDEILRP 150 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-------~---~~~~~~~~WspDg-~l~y~~~~~~~~~ 150 (648)
.+...++||||++|+-.+ .+| -|-|||.-+|+.+.+- + +.....+.||.|+ .++-... +..
T Consensus 215 h~EcA~FSPDgqyLvsgS-vDG----FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq---DGk 286 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGS-VDG----FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ---DGK 286 (508)
T ss_pred chhheeeCCCCceEeecc-ccc----eeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc---CCc
Confidence 344678999999987543 234 6888999999876321 1 2223447778887 5543222 223
Q ss_pred ceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeec
Q 006375 151 DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHR 229 (648)
Q Consensus 151 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~d 229 (648)
-+||+ +.+++ -..-|+.....-...+.+|.|+..|+-.+. +.-+.+--+.+++-++.......- .+..+++|
T Consensus 287 IKvWr--i~tG~--ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf---D~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 287 IKVWR--IETGQ--CLRRFDRAHTKGVTCLSFSRDNSQILSASF---DQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred EEEEE--Eecch--HHHHhhhhhccCeeEEEEccCcchhhcccc---cceEEEeccccchhHHHhcCccccccceEEcCC
Confidence 34454 55552 223343322233345688999999874333 233455556666511111111111 12348899
Q ss_pred CCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC---CEEEEEEecCCeeEEEEEEcCCCCCc
Q 006375 230 GNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI---DHLAVYEREGGLQKITTYRLPAVGEP 303 (648)
Q Consensus 230 g~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~l~v~~~~~~g~~ 303 (648)
|..+.-.+.+ ..+-+.+.++.+-....-+...+..+..+.+.+ .++++..+ .+.++++++. |+.
T Consensus 360 G~~iisaSsD-----gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr---sntv~imn~q--GQv 426 (508)
T KOG0275|consen 360 GHHIISASSD-----GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR---SNTVYIMNMQ--GQV 426 (508)
T ss_pred CCeEEEecCC-----ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC---CCeEEEEecc--ceE
Confidence 9887655553 234444544422111111222333445555544 35554443 3467888877 553
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.079 Score=57.22 Aligned_cols=148 Identities=13% Similarity=-0.017 Sum_probs=82.6
Q ss_pred EEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCC
Q 006375 86 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQS 163 (648)
Q Consensus 86 ~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~ 163 (648)
.=++|||+.|--. ......+.++|.++.+.... ..++......++||| ++|.+.++... ...+-.++.++.
T Consensus 198 ~PlpnDGk~l~~~----~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~-G~tl~em~a~e~-- 270 (635)
T PRK02888 198 IPLPNDGKDLDDP----KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEE-GVTLAEMMAAER-- 270 (635)
T ss_pred cccCCCCCEeecc----cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCccc-CcceeeeccccC--
Confidence 3468999977322 22356788889998776533 344444568999999 66666554322 223333333221
Q ss_pred CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCC----CCceeE-eeecccceeeeEeecCCEEEEEec
Q 006375 164 NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK----PEELRV-LTPRVVGVDTAASHRGNHFFITRR 238 (648)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~----~~~~~~-l~~~~~~~~~~~s~dg~~l~~~~~ 238 (648)
....+|.-. . ...+.+||++.++. .+.+-++|..+ +..... |.-...-.-..+||||+++|....
T Consensus 271 d~~vvfni~--~---iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank 340 (635)
T PRK02888 271 DWVVVFNIA--R---IEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK 340 (635)
T ss_pred ceEEEEchH--H---HHHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC
Confidence 122222111 1 01457899988862 46788999887 211222 221222233458999998765533
Q ss_pred cCCCCCcEEEEEeCCC
Q 006375 239 SDELFNSELLACPVDN 254 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~ 254 (648)
. . -.+-++|+++
T Consensus 341 l--S--~tVSVIDv~k 352 (635)
T PRK02888 341 L--S--PTVTVIDVRK 352 (635)
T ss_pred C--C--CcEEEEEChh
Confidence 2 2 2466667654
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.028 Score=62.66 Aligned_cols=117 Identities=12% Similarity=0.154 Sum_probs=74.3
Q ss_pred CEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCC-eEEE-EEeCCCCCCceEEEEECCCCCCCcEEE
Q 006375 93 KLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVY-ITMDEILRPDKAWLHKLEADQSNDICL 168 (648)
Q Consensus 93 ~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg-~l~y-~~~~~~~~~~~l~~~~l~~~~~~~~~~ 168 (648)
.+|||..+..| +|.++|.++...+...+ ......+.||||| .|+| ++...-.+...||+.+|.+..+....+
T Consensus 319 tkiAfv~~~~~----~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl 394 (912)
T TIGR02171 319 AKLAFRNDVTG----NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKL 394 (912)
T ss_pred eeEEEEEcCCC----eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEe
Confidence 47899988655 89999999877664322 2234459999999 9999 665432356679999999876543333
Q ss_pred Eeec--CCCeEEEEEeCCCCcEEEEE-Ecccc--------ccEEEEEECCCCC--ceeEeee
Q 006375 169 YHEK--DDIYSLGLQASESKKFLFIA-SESKI--------TRFVFYLDVSKPE--ELRVLTP 217 (648)
Q Consensus 169 ~~~~--~~~~~~~~~~s~Dg~~l~~~-~~~~~--------~~~l~~~dl~~~~--~~~~l~~ 217 (648)
--+. -|+|- +.+.|.-+++. ++..+ ....|.+....|+ ++++|..
T Consensus 395 ~ve~aaiprwr----v~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg~p~kl~d 452 (912)
T TIGR02171 395 PVENAAIPRWR----VLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFGTPKKLFD 452 (912)
T ss_pred ecccccccceE----ecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCCCchhhhc
Confidence 2222 14443 46666554443 32211 1357888888887 4566654
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0097 Score=63.99 Aligned_cols=193 Identities=15% Similarity=0.096 Sum_probs=111.3
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCc--cceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV--TASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~--~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+.+.++|||-++|.= .+|..++++|.+++-.-+..--... ...+.|+|-|..|.+.. .++..+||..+-
T Consensus 453 PVyg~sFsPd~rfLlS-----cSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas--~D~tArLWs~d~- 524 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLS-----CSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS--HDQTARLWSTDH- 524 (707)
T ss_pred ceeeeeecccccceee-----ccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC--CCceeeeeeccc-
Confidence 4567899999998763 3445678888888866543211111 23477888883323332 234446776543
Q ss_pred CCCCCcEEEEeecCCCeEEE-EEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEeecCCEEEEEe
Q 006375 160 ADQSNDICLYHEKDDIYSLG-LQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITR 237 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~-~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~~ 237 (648)
. ....+|..+-.. ++ +.+.|+..|++-. ..+.-+.++|..++...+..+....-+. ..+||+|++|+-.
T Consensus 525 -~--~PlRifaghlsD--V~cv~FHPNs~Y~aTG---SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg- 595 (707)
T KOG0263|consen 525 -N--KPLRIFAGHLSD--VDCVSFHPNSNYVATG---SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASG- 595 (707)
T ss_pred -C--Cchhhhcccccc--cceEEECCcccccccC---CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeec-
Confidence 2 345566543211 22 4689999888633 3345677888888873344444333333 4599999876433
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
+..+.|.+.|+.++.....+..|.. .+-++++..++-++.+. .+...+.+|++.
T Consensus 596 ----~ed~~I~iWDl~~~~~v~~l~~Ht~--ti~SlsFS~dg~vLasg-g~DnsV~lWD~~ 649 (707)
T KOG0263|consen 596 ----DEDGLIKIWDLANGSLVKQLKGHTG--TIYSLSFSRDGNVLASG-GADNSVRLWDLT 649 (707)
T ss_pred ----ccCCcEEEEEcCCCcchhhhhcccC--ceeEEEEecCCCEEEec-CCCCeEEEEEch
Confidence 2336788888876332222555532 35566665554443332 334567788775
|
|
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.031 Score=53.87 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=86.0
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCC---CCCCCC-CchhHHHHHHCCCEEEEEccCCCCCCCh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE---ICNDPA-FNSSRLSLLDRGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~---~~~~~~-~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 451 (648)
+++..+.+..|. |.+.+. + ++.++.|+||..|.-.- ++...- +.+.++.++++ ++|+-+|.+|.-.-..
T Consensus 22 ~~e~~V~T~~G~-v~V~V~---G--d~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp 94 (326)
T KOG2931|consen 22 CQEHDVETAHGV-VHVTVY---G--DPKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAP 94 (326)
T ss_pred ceeeeecccccc-EEEEEe---c--CCCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCc
Confidence 345555555664 665533 2 22346789999998211 111111 23456777777 9999999998653222
Q ss_pred hhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 452 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
.+.. .....+++|+.+-+..+.+.-.. +-|.-+|.-+|+++-++.|..+|+++-++|+..+.
T Consensus 95 ~~p~----~y~yPsmd~LAd~l~~VL~~f~l--k~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~ 156 (326)
T KOG2931|consen 95 SFPE----GYPYPSMDDLADMLPEVLDHFGL--KSVIGMGVGAGAYILARFALNHPERVLGLVLINCD 156 (326)
T ss_pred cCCC----CCCCCCHHHHHHHHHHHHHhcCc--ceEEEecccccHHHHHHHHhcChhheeEEEEEecC
Confidence 2211 11235677887777777665333 78999999999999999999999999999988764
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.012 Score=61.39 Aligned_cols=202 Identities=14% Similarity=0.132 Sum_probs=113.5
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccccCccceeEEecCC--eEEEEEeCCCCCCceEEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGVTASVEWAGNE--ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~~~~~~~~~WspDg--~l~y~~~~~~~~~~~l~~~~ 157 (648)
-.+.++++.|.|.+||= |++..+|+||.++||.-+. ..+.+....++|.|.+ .++-+..... +.+.+
T Consensus 401 g~Vr~iSvdp~G~wlas-----GsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-----~~ivn 470 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLAS-----GSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-----VLIVN 470 (733)
T ss_pred CeEEEEEecCCcceeee-----cCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-----eEEeC
Confidence 45678899999999884 4445589999999998654 3455666679999997 5555443211 11211
Q ss_pred CCCC------CC-----------------------------CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEE
Q 006375 158 LEAD------QS-----------------------------NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVF 202 (648)
Q Consensus 158 l~~~------~~-----------------------------~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 202 (648)
-.-+ .+ ....+.-. .+.-.-.+.|..+|.||+....+.....++
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~-~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIK-HPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEe-cCCccceeeeecCCceEEEeccCCCcceEE
Confidence 1000 00 00000000 111223578999999999888888888999
Q ss_pred EEECCCCCceeEeeeccccee-eeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEE
Q 006375 203 YLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLA 281 (648)
Q Consensus 203 ~~dl~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 281 (648)
+..|........+.....-+. ..|-|.--+|++.|.+ .|..+|+......+.+.+...-..-.++++.||.++
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~------~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR------SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEecc------ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 999877651111211111122 2355555556555544 466667754211111333332222223444557887
Q ss_pred EEEecCCeeEEEEEEcCCCCC
Q 006375 282 VYEREGGLQKITTYRLPAVGE 302 (648)
Q Consensus 282 ~~~~~~~~~~l~v~~~~~~g~ 302 (648)
+.... .++..++++...+
T Consensus 624 ~gs~d---~k~~WfDldlssk 641 (733)
T KOG0650|consen 624 LGSYD---KKMCWFDLDLSSK 641 (733)
T ss_pred EecCC---CeeEEEEcccCcc
Confidence 76654 4678888886443
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0062 Score=60.75 Aligned_cols=190 Identities=17% Similarity=0.111 Sum_probs=102.3
Q ss_pred cEEEeeEEeCCC--CCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC---ccceeEEecCC-eEEEEEeCCCCCCceE
Q 006375 80 FYSVGCFQVSPD--NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKA 153 (648)
Q Consensus 80 ~~~~~~~~~SPD--G~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~WspDg-~l~y~~~~~~~~~~~l 153 (648)
...++.+.|+|. +.-||= ...+| .+.+|++++..++.+ +.+ ..+.++|.|+| .|.-.++|..+
T Consensus 217 ~~~v~~~~fhP~~~~~~lat-~s~Dg----tvklw~~~~e~~l~~-l~gH~~RVs~VafHPsG~~L~TasfD~tW----- 285 (459)
T KOG0272|consen 217 TSRVGAAVFHPVDSDLNLAT-ASADG----TVKLWKLSQETPLQD-LEGHLARVSRVAFHPSGKFLGTASFDSTW----- 285 (459)
T ss_pred ccceeeEEEccCCCccceee-eccCC----ceeeeccCCCcchhh-hhcchhhheeeeecCCCceeeecccccch-----
Confidence 456788999998 445543 23334 688889887666543 222 24569999999 66555555443
Q ss_pred EEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEee-ecccc-eeeeEeecCC
Q 006375 154 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-PRVVG-VDTAASHRGN 231 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~-~~~~~-~~~~~s~dg~ 231 (648)
.++|+.++ .+++..+....-..+++|.+||..++ +..-....+ ++|+.++. -..+. ..... ....|||+|-
T Consensus 286 RlWD~~tk---~ElL~QEGHs~~v~~iaf~~DGSL~~-tGGlD~~~R--vWDlRtgr-~im~L~gH~k~I~~V~fsPNGy 358 (459)
T KOG0272|consen 286 RLWDLETK---SELLLQEGHSKGVFSIAFQPDGSLAA-TGGLDSLGR--VWDLRTGR-CIMFLAGHIKEILSVAFSPNGY 358 (459)
T ss_pred hhcccccc---hhhHhhcccccccceeEecCCCceee-ccCccchhh--eeecccCc-EEEEecccccceeeEeECCCce
Confidence 34567776 33455555444455889999997554 222222234 56888876 33322 22222 3356999996
Q ss_pred EEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCC-cccceEEEeCCEEEEEEecCCeeEEE
Q 006375 232 HFFITRRSDELFNSELLACPVDNTSETTVLIPHRES-VKLQDIQLFIDHLAVYEREGGLQKIT 293 (648)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~l~ 293 (648)
.|+--+.+ ...-+.|+..-.... ++|...+ +.-.-+++..+..++...-+..-+||
T Consensus 359 ~lATgs~D-----nt~kVWDLR~r~~ly-~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 359 HLATGSSD-----NTCKVWDLRMRSELY-TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIW 415 (459)
T ss_pred EEeecCCC-----CcEEEeeecccccce-ecccccchhhheEecccCCeEEEEcccCcceeee
Confidence 65433332 233444554422222 4553333 22223344334444455444433333
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.016 Score=59.91 Aligned_cols=204 Identities=11% Similarity=0.081 Sum_probs=116.3
Q ss_pred EEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccccCc-cceeEEecCC-eEEEEE
Q 006375 67 LILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGV-TASVEWAGNE-ALVYIT 143 (648)
Q Consensus 67 ~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~~~~-~~~~~WspDg-~l~y~~ 143 (648)
.|+|..++.. --+.++.|||-+..|||-.....+--.++-++.+-+++.+. ..+.++ .-.+-|-..| +|.+-.
T Consensus 337 ~lld~Kslki----~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 337 MLLDKKSLKI----SGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV 412 (698)
T ss_pred eeecccccCC----ccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE
Confidence 3455444432 24678999999999999987766656788889988877653 234443 3458899999 776654
Q ss_pred eCC-CC------CCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccc--cEEEEEECCCCCceeE
Q 006375 144 MDE-IL------RPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKIT--RFVFYLDVSKPEELRV 214 (648)
Q Consensus 144 ~~~-~~------~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~--~~l~~~dl~~~~~~~~ 214 (648)
.+- .. .+.++++++ .. +..+-...-....+.++|-|.|..+++.+..... -..|-+.....+ +.+
T Consensus 413 dR~tK~~~~g~f~n~eIfrir--eK---dIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~-~~l 486 (698)
T KOG2314|consen 413 DRHTKSKVKGQFSNLEIFRIR--EK---DIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK-PSL 486 (698)
T ss_pred EeeccccccceEeeEEEEEee--cc---CCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc-hhh
Confidence 321 11 122344433 21 2211111111234567899999777766655433 345555543443 444
Q ss_pred eeec--ccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEE
Q 006375 215 LTPR--VVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYE 284 (648)
Q Consensus 215 l~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (648)
+..- ......+|||.|+++++.+-. +.++.|.-+|.+-.... .+...++.....+.|++.+.|+..
T Consensus 487 Vk~~dk~~~N~vfwsPkG~fvvva~l~--s~~g~l~F~D~~~a~~k--~~~~~eh~~at~veWDPtGRYvvT 554 (698)
T KOG2314|consen 487 VKELDKKFANTVFWSPKGRFVVVAALV--SRRGDLEFYDTDYADLK--DTASPEHFAATEVEWDPTGRYVVT 554 (698)
T ss_pred hhhhcccccceEEEcCCCcEEEEEEec--ccccceEEEecchhhhh--hccCccccccccceECCCCCEEEE
Confidence 3321 122356799999988776654 35677888887631111 233333444455666665544443
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0024 Score=68.23 Aligned_cols=131 Identities=13% Similarity=0.036 Sum_probs=77.7
Q ss_pred CeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCch----------------hHHHHHHCCCEEEEEcc-CCCCC
Q 006375 386 GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS----------------SRLSLLDRGFIFAIAQI-RGGGE 448 (648)
Q Consensus 386 g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~----------------~~~~l~~~G~~v~~~~~-rG~g~ 448 (648)
+..+..|++..+.. ....|+||+++||+|.+...++-. .-..|.+. ..++.+|. +|.|.
T Consensus 60 ~~~lFyw~~~s~~~---~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l~iDqP~G~G~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRNG---NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNE-AYVIYVDQPAGVGF 135 (462)
T ss_pred CceEEEEEEEcCCC---CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccc-cCeEEEeCCCCcCc
Confidence 44577776654432 356799999999998764332110 11245544 45667775 56552
Q ss_pred -CChhhhhcccccCCCCcHhHHHHHHHHHHHc-CCCCCCeEEEEeeChhHHHHHHHHhh----CC------CceeEEEec
Q 006375 449 -LGRQWYENGKFLKKKNTFTDFIACAEYLIKN-CYCTKEKLCIEGRSAGGLLIGAVLNM----RP------DLFKAAVAA 516 (648)
Q Consensus 449 -~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~----~p------~~~~a~v~~ 516 (648)
++.. . ..........+|+...++...++ ......++.|+|+||||..+-.++.+ .. =.++++++.
T Consensus 136 S~~~~-~--~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IG 212 (462)
T PTZ00472 136 SYADK-A--DYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVG 212 (462)
T ss_pred ccCCC-C--CCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEe
Confidence 2211 0 01111123557777777755443 33345799999999999977555443 11 147899999
Q ss_pred CCccccc
Q 006375 517 VPFVDVL 523 (648)
Q Consensus 517 ~~~~d~~ 523 (648)
.|++|..
T Consensus 213 Ng~~dp~ 219 (462)
T PTZ00472 213 NGLTDPY 219 (462)
T ss_pred ccccChh
Confidence 9988754
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.06 Score=50.69 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=61.4
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccC---ccceeEEecCC-eEEEEEeCCCCCCceEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~---~~~~~~WspDg-~l~y~~~~~~~~~~~l~~ 155 (648)
..+.++.|+-||++||-.+. ...+.|++++.++.+.. ...+ ..-.+.|.|-. -++++...+ ..+.+
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~-----dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d----k~ir~ 91 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSF-----DKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD----KTIRI 91 (313)
T ss_pred hcceEEEEcccCceeeeccc-----CCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCC----ceEEE
Confidence 35678899999999997654 23677778776644321 1111 23458899887 666665422 23667
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEE
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIAS 193 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~ 193 (648)
+++..+ +.....+..... +.+.|||||.++++..
T Consensus 92 wd~r~~--k~~~~i~~~~en--i~i~wsp~g~~~~~~~ 125 (313)
T KOG1407|consen 92 WDIRSG--KCTARIETKGEN--INITWSPDGEYIAVGN 125 (313)
T ss_pred EEeccC--cEEEEeeccCcc--eEEEEcCCCCEEEEec
Confidence 777665 222222222222 3568999999998754
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.048 Score=52.92 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=48.8
Q ss_pred eeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC--EEEEEEecCCeeEEEEEEcCCCC
Q 006375 224 TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPAVG 301 (648)
Q Consensus 224 ~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~~~~g 301 (648)
..||+|..++. +.| +..+| .|+..|+........++ ... .+..+.|++. ++++.. |.++++.+.+. |
T Consensus 324 lafs~Ds~y~a-Trn-d~~Pn-alW~Wdlq~l~l~avLi-Qk~--piraf~WdP~~prL~vct---g~srLY~W~ps--g 392 (447)
T KOG4497|consen 324 LAFSCDSTYAA-TRN-DKYPN-ALWLWDLQNLKLHAVLI-QKH--PIRAFEWDPGRPRLVVCT---GKSRLYFWAPS--G 392 (447)
T ss_pred eeecCCceEEe-eec-CCCCc-eEEEEechhhhhhhhhh-hcc--ceeEEEeCCCCceEEEEc---CCceEEEEcCC--C
Confidence 35888875332 223 34554 78999987633222222 222 3677888775 455443 55788888766 4
Q ss_pred CcccccCCCceeecCCCeeeeeCCCCccccc
Q 006375 302 EPLKSLQGGKSVEFIDPVYSIDPSESVFSSR 332 (648)
Q Consensus 302 ~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~ 332 (648)
- ..+..|.++++|..+.+.-.++
T Consensus 393 ~--------~~V~vP~~GF~i~~l~W~~~g~ 415 (447)
T KOG4497|consen 393 P--------RVVGVPKKGFNIQKLQWLQPGE 415 (447)
T ss_pred c--------eEEecCCCCceeeeEEecCCCc
Confidence 2 2344455555554444433333
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.024 Score=58.82 Aligned_cols=144 Identities=10% Similarity=0.108 Sum_probs=87.5
Q ss_pred eeEEeCCCCCEEEEEE----eCCCC---eEEEEEEEECCCCCee-eccccCccceeEEecCC-eEEEEEeCCCCCCceEE
Q 006375 84 GCFQVSPDNKLVAYAE----DTKGD---EIYTVYVIDIETGTPV-GKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAW 154 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~----~~~G~---e~~~l~v~dl~~g~~~-~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~ 154 (648)
-.+.|.+-|.-|.... |..|. ...+||+++.++...+ +..-.+....+.|+|+| .+..+- +-.+..+-
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~Vvy---GfMPAkvt 297 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVY---GFMPAKVT 297 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEE---ecccceEE
Confidence 4678999999777663 22221 1468999999844433 33445656679999999 554332 23456677
Q ss_pred EEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-ccccee-eeEeecCCE
Q 006375 155 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGVD-TAASHRGNH 232 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~~~-~~~s~dg~~ 232 (648)
++++... .++.-+.... -.+.|+|.|++|++..-..-..++-++|..+.+ ++.. ...+.. +.|+|||++
T Consensus 298 ifnlr~~-----~v~df~egpR-N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K---~i~~~~a~~tt~~eW~PdGe~ 368 (566)
T KOG2315|consen 298 IFNLRGK-----PVFDFPEGPR-NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK---LIAKFKAANTTVFEWSPDGEY 368 (566)
T ss_pred EEcCCCC-----EeEeCCCCCc-cceEECCCCCEEEEeecCCCCCceEEEeccchh---hccccccCCceEEEEcCCCcE
Confidence 8887764 3443332222 134689999999986432223445556766643 2322 223333 459999998
Q ss_pred EEEEecc
Q 006375 233 FFITRRS 239 (648)
Q Consensus 233 l~~~~~~ 239 (648)
|+..+..
T Consensus 369 flTATTa 375 (566)
T KOG2315|consen 369 FLTATTA 375 (566)
T ss_pred EEEEecc
Confidence 8777664
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00059 Score=69.24 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=62.2
Q ss_pred CCCCcEEEEecCCCCCCCCCCCchh-HHHHHH---CCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHH
Q 006375 403 DGSDPLLLYGYGSYEICNDPAFNSS-RLSLLD---RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK 478 (648)
Q Consensus 403 ~~~~P~vl~~hGg~~~~~~~~~~~~-~~~l~~---~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 478 (648)
+.+.|+++++||-.+......+... ...++. +.+.|+++|...+... .+..+.... ...-..+...+..|..
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~~n~--~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAVANT--RLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc--cccchhhhH--HHHHHHHHHHHHHHHh
Confidence 4568999999995444423333333 344555 4899999998632221 122111110 0111344455667775
Q ss_pred cCCCCCCeEEEEeeChhHHHHHHHHhhCCC--ceeEEEecCCc
Q 006375 479 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPD--LFKAAVAAVPF 519 (648)
Q Consensus 479 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~--~~~a~v~~~~~ 519 (648)
...+++++|-++|||+|+.+|+.+..+-.. ++..+...-|.
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA 186 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA 186 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence 555889999999999999999999887665 56666666553
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0028 Score=62.52 Aligned_cols=111 Identities=18% Similarity=0.155 Sum_probs=71.3
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHH---HCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHH----HHHHHHH
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLL---DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIA----CAEYLIK 478 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~---~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~----~~~~l~~ 478 (648)
.++|+++.|.||... -|......|. ...+.|+++...|....... ... ....+..+++|.+. .++.++.
T Consensus 2 ~~li~~IPGNPGlv~--fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~-~~~-~~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVE--FYEEFLSALYEKLNPQFEILGISHAGHSTSPSN-SKF-SPNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCChHH--HHHHHHHHHHHhCCCCCeeEEecCCCCcCCccc-ccc-cCCCCccCHHHHHHHHHHHHHHHhh
Confidence 468999999888532 1222233343 34899999999887644332 000 01233345555554 3333333
Q ss_pred cCCCCCCeEEEEeeChhHHHHHHHHhhCC---CceeEEEecCCcc
Q 006375 479 NCYCTKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVAAVPFV 520 (648)
Q Consensus 479 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~~~a~v~~~~~~ 520 (648)
.......++.++|||.|+++++.++.+.+ ..+..+++..|.+
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 22114579999999999999999999998 5788888888864
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.065 Score=50.60 Aligned_cols=187 Identities=15% Similarity=0.124 Sum_probs=107.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
++-...++-|.++|. .|+....+.+||+++|+.+.. ..+.....+.|+++| .++++....-+....|..+++.
T Consensus 54 avW~~Did~~s~~li-----TGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 54 AVWCCDIDWDSKHLI-----TGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR 128 (327)
T ss_pred eEEEEEecCCcceee-----eccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence 455566666777654 255567899999999998854 334445568999999 8888777666667778888777
Q ss_pred CCC----CCc-EEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cc--cc-eeeeEeecC
Q 006375 160 ADQ----SND-ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RV--VG-VDTAASHRG 230 (648)
Q Consensus 160 ~~~----~~~-~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~--~~-~~~~~s~dg 230 (648)
... +++ .+....++.. ....-|+|-+++|+... ....|-.+|+.++. ..+.. .. .. .+..+|+|.
T Consensus 129 ~~~~~~~s~ep~~kI~t~~sk-it~a~Wg~l~~~ii~Gh---e~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~ 202 (327)
T KOG0643|consen 129 DDSSDIDSEEPYLKIPTPDSK-ITSALWGPLGETIIAGH---EDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDR 202 (327)
T ss_pred CChhhhcccCceEEecCCccc-eeeeeecccCCEEEEec---CCCcEEEEEcccCc--eeeechhhhccccccccccCCc
Confidence 432 122 3333333322 33567999999987532 33567888998875 22211 11 11 234588887
Q ss_pred CEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEe
Q 006375 231 NHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYER 285 (648)
Q Consensus 231 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (648)
..+. +...+ .+.+| +|..+....+....+. .+.-..+.+..|++++..-
T Consensus 203 T~Fi-T~s~D--ttakl--~D~~tl~v~Kty~te~-PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 203 TYFI-TGSKD--TTAKL--VDVRTLEVLKTYTTER-PVNTAAISPLLDHVILGGG 251 (327)
T ss_pred ceEE-ecccC--cccee--eeccceeeEEEeeecc-cccceecccccceEEecCC
Confidence 6433 32322 23344 3444432222222222 2223445566677766543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.033 Score=59.07 Aligned_cols=158 Identities=13% Similarity=0.170 Sum_probs=91.3
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee--eccccC---ccceeEEecCC-eEEEEEeCCCCCCceE
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV--GKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKA 153 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~--~~~~~~---~~~~~~WspDg-~l~y~~~~~~~~~~~l 153 (648)
...+....+||||++|||..-. +..||-+..+....+ .+..+- ......++-|+ .+++...+ ..+|
T Consensus 382 ~~nIs~~aiSPdg~~Ia~st~~----~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~----~~~l 453 (691)
T KOG2048|consen 382 KENISCAAISPDGNLIAISTVS----RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKN----IFSL 453 (691)
T ss_pred ccceeeeccCCCCCEEEEeecc----ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecc----ccee
Confidence 4567788999999999998632 234444444331111 111111 13457889999 88777622 2446
Q ss_pred EEEECCCCCCCcEEEEeec-CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc--ceeeeEeec-
Q 006375 154 WLHKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV--GVDTAASHR- 229 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~--~~~~~~s~d- 229 (648)
....+.++..+...-.... .......+..|+||.||++.+ +...|+++++++.+ .+.+..+.. .....++|.
T Consensus 454 e~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~---t~g~I~v~nl~~~~-~~~l~~rln~~vTa~~~~~~~ 529 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS---TRGQIFVYNLETLE-SHLLKVRLNIDVTAAAFSPFV 529 (691)
T ss_pred EEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe---ccceEEEEEcccce-eecchhccCcceeeeeccccc
Confidence 6667776643333222221 223344677899999999765 45789999999987 555543332 222335533
Q ss_pred CCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 230 GNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 230 g~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
-..|++.+.. .+++..|++.
T Consensus 530 ~~~lvvats~-----nQv~efdi~~ 549 (691)
T KOG2048|consen 530 RNRLVVATSN-----NQVFEFDIEA 549 (691)
T ss_pred cCcEEEEecC-----CeEEEEecch
Confidence 3445444332 3677777743
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.014 Score=64.98 Aligned_cols=205 Identities=15% Similarity=0.060 Sum_probs=101.1
Q ss_pred CCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC----C----Ceee------ccccCccceeEEecCC-eEEEE
Q 006375 78 RGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET----G----TPVG------KPLVGVTASVEWAGNE-ALVYI 142 (648)
Q Consensus 78 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~----g----~~~~------~~~~~~~~~~~WspDg-~l~y~ 142 (648)
|...++..+.++|||.++|=.-.. . ...+.||+.+. . +.++ ..-.+....+.||||| +|+..
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~--~-d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQV--L-DGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCcc--c-cccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence 444567788999999987733211 1 11222554331 0 0011 1112334558899999 77654
Q ss_pred EeCCCCCCceEEEEEC-C------C-CCC------CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCC
Q 006375 143 TMDEILRPDKAWLHKL-E------A-DQS------NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 208 (648)
Q Consensus 143 ~~~~~~~~~~l~~~~l-~------~-~~~------~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~ 208 (648)
+.| +.-.||...- + + +.. +...++..++ .-..++.||||+++++-.+ -++.|.+++..+
T Consensus 88 SDD---~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s---~DnsViiwn~~t 160 (942)
T KOG0973|consen 88 SDD---RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVS---LDNSVIIWNAKT 160 (942)
T ss_pred cCc---ceEEEeeecccCCcccccccccccccceeeEEEEEecCC-CccceeccCCCccEEEEec---ccceEEEEcccc
Confidence 432 2333454441 1 1 000 0123444443 3345789999999887433 346688888877
Q ss_pred CCceeEeeecccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCC-------CcccceEEEeCCEE
Q 006375 209 PEELRVLTPRVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE-------SVKLQDIQLFIDHL 280 (648)
Q Consensus 209 ~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l 280 (648)
.+..+.+.....-+ -..|+|-|++|+-.+++ ...++++ ..+.+..+ .+.... ...-.+|+++++++
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdD---rtikvwr--t~dw~i~k-~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDD---RTLKVWR--TSDWGIEK-SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ceeeeeeecccccccceEECCccCeeeeecCC---ceEEEEE--cccceeeE-eeccchhhCCCcceeeecccCCCcCee
Confidence 64222222222111 24599999977666554 1234554 32222222 122111 11123455566666
Q ss_pred EEEE-ecCCeeEEEEEEcC
Q 006375 281 AVYE-REGGLQKITTYRLP 298 (648)
Q Consensus 281 ~~~~-~~~~~~~l~v~~~~ 298 (648)
+... .+++.+.+.+++.+
T Consensus 235 as~nA~n~~~~~~~IieR~ 253 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERG 253 (942)
T ss_pred cchhhccCCcceeEEEecC
Confidence 4432 23445566666554
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0066 Score=59.04 Aligned_cols=236 Identities=14% Similarity=0.196 Sum_probs=116.0
Q ss_pred EeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCC---CCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcc
Q 006375 381 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI---CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG 457 (648)
Q Consensus 381 ~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~---~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~ 457 (648)
+++.-| .|.+.+. + +++++.|+||..|--.-. +...-|...........++++=+|.+|..+-......
T Consensus 4 v~t~~G-~v~V~v~---G--~~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~~f~i~Hi~aPGqe~ga~~~p~-- 75 (283)
T PF03096_consen 4 VETPYG-SVHVTVQ---G--DPKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEILQNFCIYHIDAPGQEEGAATLPE-- 75 (283)
T ss_dssp EEETTE-EEEEEEE---S--S--TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHHTTSEEEEEE-TTTSTT-----T--
T ss_pred eccCce-EEEEEEE---e--cCCCCCceEEEeccccccchHHHHHHhcchhHHHHhhceEEEEEeCCCCCCCcccccc--
Confidence 334445 3555533 2 233468999999972111 1111122222333445799999999998763333321
Q ss_pred cccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccc------ccccccC-CC
Q 006375 458 KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD------VLTTMLD-PT 530 (648)
Q Consensus 458 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d------~~~~~~~-~~ 530 (648)
.....+++++.+.+..+.+.-.+ +.+..+|.-+|+++-+..|..+|+++-++|+..|... +...-+. ..
T Consensus 76 --~y~yPsmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~ 151 (283)
T PF03096_consen 76 --GYQYPSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWL 151 (283)
T ss_dssp --T-----HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH---
T ss_pred --cccccCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhccc
Confidence 11234667777666666655333 6799999999999999999999999999999887543 2211000 00
Q ss_pred CC---CC--cccc---cccCCC---CCHH-----------------HHHHHHcC---Ccc-ccCCCCCCCeEEEeecCCC
Q 006375 531 IP---LT--TAEW---EEWGDP---WKEE-----------------FYFYMKSY---SPV-DNVKAQNYPHILVTAGLND 578 (648)
Q Consensus 531 ~~---~~--~~~~---~~~g~~---~~~~-----------------~~~~~~~~---sp~-~~~~~~~~P~~li~~g~~D 578 (648)
+. .+ ..++ ..||.. .+.+ ...++.+| ..+ ...+...+| +|++.|++-
T Consensus 152 L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~-vLlvvG~~S 230 (283)
T PF03096_consen 152 LYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCP-VLLVVGDNS 230 (283)
T ss_dssp ----CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS--EEEEEETTS
T ss_pred ccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCC-eEEEEecCC
Confidence 00 00 0010 112211 0111 11122222 112 123334788 999999998
Q ss_pred CccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 579 PRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
+. ..++.++..+|... +--+++.+ ++|=.. ..++-..++..+.+|.+-+|.
T Consensus 231 p~--~~~vv~~ns~Ldp~----~ttllkv~-dcGglV---~eEqP~klaea~~lFlQG~G~ 281 (283)
T PF03096_consen 231 PH--VDDVVEMNSKLDPT----KTTLLKVA-DCGGLV---LEEQPGKLAEAFKLFLQGMGY 281 (283)
T ss_dssp TT--HHHHHHHHHHS-CC----CEEEEEET-T-TT-H---HHH-HHHHHHHHHHHHHHTTB
T ss_pred cc--hhhHHHHHhhcCcc----cceEEEec-ccCCcc---cccCcHHHHHHHHHHHccCCc
Confidence 76 45778888888543 23455544 565432 344455666778888887764
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.015 Score=59.49 Aligned_cols=163 Identities=14% Similarity=0.135 Sum_probs=93.9
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-e----cccc--Cc-cceeEEecCC-eEEEEEeCCCCCC
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-G----KPLV--GV-TASVEWAGNE-ALVYITMDEILRP 150 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-~----~~~~--~~-~~~~~WspDg-~l~y~~~~~~~~~ 150 (648)
.+.+..-.|.|+.+-...+...+| ++++||+..-+.. . .... .+ ....+|++|| .|+-...+ ..
T Consensus 268 ia~lt~g~whP~~k~~FlT~s~Dg----tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D---GS 340 (641)
T KOG0772|consen 268 IAELTCGCWHPDNKEEFLTCSYDG----TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD---GS 340 (641)
T ss_pred eeeeeccccccCcccceEEecCCC----cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC---Cc
Confidence 467788899999998877777666 7888898754321 1 1111 12 4568899999 65543332 23
Q ss_pred ceEEEEECCCCCCCcEEEEe-ecCC-CeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCce----eEeeecccceee
Q 006375 151 DKAWLHKLEADQSNDICLYH-EKDD-IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL----RVLTPRVVGVDT 224 (648)
Q Consensus 151 ~~l~~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~----~~l~~~~~~~~~ 224 (648)
-|+| +.++-.......+. .+.+ .-...+.+|.||++|+ ++..+..|-++||...+++ .-|.......+.
T Consensus 341 IQ~W--~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll---SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc 415 (641)
T KOG0772|consen 341 IQIW--DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL---SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC 415 (641)
T ss_pred eeee--ecCCcccccceEeeeccCCCCceeEEEeccccchhh---hccCCCceeeeeccccccchhhhcCCCccCCCCcc
Confidence 3444 43433222222222 2222 2344688999999987 4555667888898876511 112222334456
Q ss_pred eEeecCCEEEEEeccC-CCCCcEEEEEeCCC
Q 006375 225 AASHRGNHFFITRRSD-ELFNSELLACPVDN 254 (648)
Q Consensus 225 ~~s~dg~~l~~~~~~~-~~~~~~l~~~~~~~ 254 (648)
-||||.+.|+--+... +.....|+.+|.-+
T Consensus 416 ~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 416 CFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 6999987554333321 22234677777544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.028 Score=61.70 Aligned_cols=166 Identities=14% Similarity=0.056 Sum_probs=99.7
Q ss_pred CceEEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee--ccccCccceeEEecCC-eEE
Q 006375 64 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG--KPLVGVTASVEWAGNE-ALV 140 (648)
Q Consensus 64 ~~~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~--~~~~~~~~~~~WspDg-~l~ 140 (648)
.+..+|+.-++ .+....+|-+|+++|..++ .+.|.++++.+..... ....+....+.+.|.+ -|+
T Consensus 87 ~~~~iL~Rftl-------p~r~~~v~g~g~~iaagsd-----D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLA 154 (933)
T KOG1274|consen 87 EEDTILARFTL-------PIRDLAVSGSGKMIAAGSD-----DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLA 154 (933)
T ss_pred Cccceeeeeec-------cceEEEEecCCcEEEeecC-----ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEE
Confidence 44556665544 4567899999999998654 5789999987754332 2334445668999999 665
Q ss_pred EEEeCCCCCCceEEEEECCCCCCCcEE--EE---eecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEe
Q 006375 141 YITMDEILRPDKAWLHKLEADQSNDIC--LY---HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL 215 (648)
Q Consensus 141 y~~~~~~~~~~~l~~~~l~~~~~~~~~--~~---~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l 215 (648)
....+ ..|+.+++.++.-...+ +. +..+.+....++|+|+|..+++-.. .+.|-+++..+.+..-.+
T Consensus 155 vss~d-----G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~---d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 155 VSSCD-----GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV---DNTVKVYSRKGWELQFKL 226 (933)
T ss_pred EEecC-----ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc---CCeEEEEccCCceeheee
Confidence 55543 34888888765221111 10 1111234456899999655555433 345677777665411122
Q ss_pred eecc--c-ceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 216 TPRV--V-GVDTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 216 ~~~~--~-~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
.... . -....|||.|++|+-.+-. .+|.+.|+++
T Consensus 227 r~~~~ss~~~~~~wsPnG~YiAAs~~~-----g~I~vWnv~t 263 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWSPNGKYIAASTLD-----GQILVWNVDT 263 (933)
T ss_pred cccccccceEEEEEcCCCcEEeeeccC-----CcEEEEeccc
Confidence 2211 1 1234699999988766543 4677888764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.019 Score=58.66 Aligned_cols=175 Identities=13% Similarity=0.144 Sum_probs=100.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccC---ccceeEEecCCeEEEEEeCCCCCCceEEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG---VTASVEWAGNEALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~---~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~ 157 (648)
-+....++|||+.|.. |+|..+|-||||++...+.. .+.. ....++-|||..+.|....+.+ |..+|
T Consensus 467 yiRSckL~pdgrtLiv-----GGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGn----I~vwD 537 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIV-----GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGN----IAVWD 537 (705)
T ss_pred ceeeeEecCCCceEEe-----ccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCc----EEEEE
Confidence 4678899999999875 55688999999998766532 1221 2344888999988888774432 66667
Q ss_pred CCCCCCCcEEEEeec-CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-ccc--eeeeEeecCCEE
Q 006375 158 LEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG--VDTAASHRGNHF 233 (648)
Q Consensus 158 l~~~~~~~~~~~~~~-~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-~~~--~~~~~s~dg~~l 233 (648)
|... .-..-|... |..- -+..|+||..|.- .+-++-+.-+|+..+. .+... ..- +....+|.|+||
T Consensus 538 Lhnq--~~VrqfqGhtDGas--cIdis~dGtklWT---GGlDntvRcWDlregr---qlqqhdF~SQIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 538 LHNQ--TLVRQFQGHTDGAS--CIDISKDGTKLWT---GGLDNTVRCWDLREGR---QLQQHDFSSQIFSLGYCPTGDWL 607 (705)
T ss_pred cccc--eeeecccCCCCCce--eEEecCCCceeec---CCCccceeehhhhhhh---hhhhhhhhhhheecccCCCccce
Confidence 7543 112222222 2222 3467899988752 2334677888887764 22221 111 223467899998
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEE
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLA 281 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 281 (648)
++--. +..+.+....++.+.+ +.-+...+.-.-|+.++.+.+
T Consensus 608 avGMe-----ns~vevlh~skp~kyq-lhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 608 AVGME-----NSNVEVLHTSKPEKYQ-LHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeecc-----cCcEEEEecCCcccee-ecccccEEEEEEecccCceee
Confidence 76533 2345555555543332 332332322233445555543
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0012 Score=43.62 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=21.2
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEE
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYV 111 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v 111 (648)
..+.|||||++|+|++++.+....+||+
T Consensus 12 ~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 5789999999999999988222577875
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0035 Score=60.09 Aligned_cols=97 Identities=20% Similarity=0.324 Sum_probs=61.8
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec----cccCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK----PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~----~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
.+-.+.+|.|...||- |+....|.||.+.+|.-+.. ...++. .+.||.|+ .|+-.+.| ..+..|
T Consensus 265 aVlci~FSRDsEMlAs-----GsqDGkIKvWri~tG~ClRrFdrAHtkGvt-~l~FSrD~SqiLS~sfD-----~tvRiH 333 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLAS-----GSQDGKIKVWRIETGQCLRRFDRAHTKGVT-CLSFSRDNSQILSASFD-----QTVRIH 333 (508)
T ss_pred ceEEEeecccHHHhhc-----cCcCCcEEEEEEecchHHHHhhhhhccCee-EEEEccCcchhhccccc-----ceEEEe
Confidence 3456788999888874 33345899999999975421 123333 48999999 77654443 346777
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIA 192 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~ 192 (648)
-+.++ +-..-|..+ ..|.....+++||.+|+-.
T Consensus 334 GlKSG--K~LKEfrGH-sSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 334 GLKSG--KCLKEFRGH-SSYVNEATFTDDGHHIISA 366 (508)
T ss_pred ccccc--hhHHHhcCc-cccccceEEcCCCCeEEEe
Confidence 77776 222223222 3455567788999887643
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.39 Score=46.88 Aligned_cols=196 Identities=15% Similarity=0.112 Sum_probs=104.4
Q ss_pred eeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeC-CCCcEEEEEEccccccEEEEEECC
Q 006375 130 SVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQAS-ESKKFLFIASESKITRFVFYLDVS 207 (648)
Q Consensus 130 ~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s-~Dg~~l~~~~~~~~~~~l~~~dl~ 207 (648)
++.|.++. .||++-.. ..+|++++..++ ...++.... ..+.... +||+.++. .. ..+.++|..
T Consensus 4 gp~~d~~~g~l~~~D~~----~~~i~~~~~~~~---~~~~~~~~~---~~G~~~~~~~g~l~v~-~~----~~~~~~d~~ 68 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIP----GGRIYRVDPDTG---EVEVIDLPG---PNGMAFDRPDGRLYVA-DS----GGIAVVDPD 68 (246)
T ss_dssp EEEEETTTTEEEEEETT----TTEEEEEETTTT---EEEEEESSS---EEEEEEECTTSEEEEE-ET----TCEEEEETT
T ss_pred ceEEECCCCEEEEEEcC----CCEEEEEECCCC---eEEEEecCC---CceEEEEccCCEEEEE-Ec----CceEEEecC
Confidence 48999854 88887432 357999998876 233343332 3355555 77665543 22 234556988
Q ss_pred CCCceeEeeecc----cc---eeeeEeecCCEEEEEeccCCC--CC--cEEEEEeCCCCCcceeEecCCCCcccceEEEe
Q 006375 208 KPEELRVLTPRV----VG---VDTAASHRGNHFFITRRSDEL--FN--SELLACPVDNTSETTVLIPHRESVKLQDIQLF 276 (648)
Q Consensus 208 ~~~~~~~l~~~~----~~---~~~~~s~dg~~l~~~~~~~~~--~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (648)
+++ .+.+.... .. .+..++++|+ ||+....... .. .+|++++.+. ..+.+... . ....++.++
T Consensus 69 ~g~-~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~--~~~~~~~~-~-~~pNGi~~s 142 (246)
T PF08450_consen 69 TGK-VTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG--KVTVVADG-L-GFPNGIAFS 142 (246)
T ss_dssp TTE-EEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS--EEEEEEEE-E-SSEEEEEEE
T ss_pred CCc-EEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC--eEEEEecC-c-ccccceEEC
Confidence 886 55554331 11 2345888887 8887654221 11 6799999872 22223222 1 124456666
Q ss_pred CC--EEEEEEecCCeeEEEEEEcCCCCCcccccCCCc-eeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECC
Q 006375 277 ID--HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGK-SVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMD 353 (648)
Q Consensus 277 ~~--~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~-~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~ 353 (648)
++ .+++... ...+|+.++++..+..+. ..+ -+.++.......++..+.+++ |++... ....++++++.
T Consensus 143 ~dg~~lyv~ds--~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~---~~~~I~~~~p~ 213 (246)
T PF08450_consen 143 PDGKTLYVADS--FNGRIWRFDLDADGGELS---NRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW---GGGRIVVFDPD 213 (246)
T ss_dssp TTSSEEEEEET--TTTEEEEEEEETTTCCEE---EEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE---TTTEEEEEETT
T ss_pred Ccchheeeccc--ccceeEEEecccccccee---eeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc---CCCEEEEECCC
Confidence 54 5554443 345688888875443221 011 122222211122345556665 444433 55789999997
Q ss_pred CCc
Q 006375 354 MGI 356 (648)
Q Consensus 354 ~~~ 356 (648)
|+
T Consensus 214 -G~ 215 (246)
T PF08450_consen 214 -GK 215 (246)
T ss_dssp -SC
T ss_pred -cc
Confidence 66
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.098 Score=54.49 Aligned_cols=229 Identities=9% Similarity=0.029 Sum_probs=131.6
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC-ccceeEEecCC---eEEEEEeCCCCCCceEEEEECCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNE---ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-~~~~~~WspDg---~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
.++||+|..+.|..+. ..++++++.+-+.....+.. -.+.++.||-+ .+++-.-...+.+..|.++...-
T Consensus 130 ~~qfs~dEsl~arlv~------nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVS------NEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred ccccccchhhhhhhhc------ceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 6899999999888763 37888888763322222222 13458888885 34332222345566666666542
Q ss_pred CCC----CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccc---------cccEEEEEECCCCCceeEeeecccceeeeEe
Q 006375 161 DQS----NDICLYHEKDDIYSLGLQASESKKFLFIASESK---------ITRFVFYLDVSKPEELRVLTPRVVGVDTAAS 227 (648)
Q Consensus 161 ~~~----~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~---------~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s 227 (648)
... ..+..| ..| -+...|.+-|.-|++.+.+. +.+.||++++++.+....|.....-.++.|+
T Consensus 204 ~~~~~~~a~ksFF-kad---kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~ 279 (566)
T KOG2315|consen 204 EGQHQPVANKSFF-KAD---KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWS 279 (566)
T ss_pred ccccchhhhcccc-ccc---eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEEC
Confidence 111 011111 111 23567999888777654321 3478999999843322333333334567799
Q ss_pred ecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCccccc
Q 006375 228 HRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSL 307 (648)
Q Consensus 228 ~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l 307 (648)
++|+.+.++-.- .-.++-..|++. ....-++++..- -.-+.+.++.+++..--+-...+.++++.. .+
T Consensus 280 ~s~~EF~VvyGf---MPAkvtifnlr~--~~v~df~egpRN-~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K---- 347 (566)
T KOG2315|consen 280 PSGREFAVVYGF---MPAKVTIFNLRG--KPVFDFPEGPRN-TAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RK---- 347 (566)
T ss_pred CCCCEEEEEEec---ccceEEEEcCCC--CEeEeCCCCCcc-ceEECCCCCEEEEeecCCCCCceEEEeccc--hh----
Confidence 999998887553 234677777764 222244444432 334677778888887777777899998873 21
Q ss_pred CCCceeecCCCeeeeeCCCCcccccEEEEEEee
Q 006375 308 QGGKSVEFIDPVYSIDPSESVFSSRILRFHYSS 340 (648)
Q Consensus 308 ~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss 340 (648)
.|.-+.... -....+.+|+..+.-..++
T Consensus 348 ----~i~~~~a~~-tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 348 ----LIAKFKAAN-TTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred ----hccccccCC-ceEEEEcCCCcEEEEEecc
Confidence 122111111 1125677888865544444
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.002 Score=60.93 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=49.5
Q ss_pred EEEecCCCCCCCCCCCchhHHHHHHCCCE---EEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 409 LLYGYGSYEICNDPAFNSSRLSLLDRGFI---FAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 409 vl~~hGg~~~~~~~~~~~~~~~l~~~G~~---v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
||++||-.+ .....|......|.++||. |...+|-..... ....... .......++.+.++.+.+. +..
T Consensus 4 VVlVHG~~~-~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~--~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa- 75 (219)
T PF01674_consen 4 VVLVHGTGG-NAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGS--PSVQNAH--MSCESAKQLRAFIDAVLAY--TGA- 75 (219)
T ss_dssp EEEE--TTT-TTCGGCCHHHHHHHHTT--CCCEEEE--S-CCHH--THHHHHH--B-HHHHHHHHHHHHHHHHH--HT--
T ss_pred EEEECCCCc-chhhCHHHHHHHHHHcCCCcceeEeccCCCCCCC--Ccccccc--cchhhHHHHHHHHHHHHHh--hCC-
Confidence 778899543 3445688888999999999 799988433321 1111000 1112234555666655542 556
Q ss_pred eEEEEeeChhHHHHHHHHhh
Q 006375 486 KLCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~ 505 (648)
+|-|+||||||.++-+++..
T Consensus 76 kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp -EEEEEETCHHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHHH
Confidence 99999999999988777753
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0011 Score=69.64 Aligned_cols=89 Identities=19% Similarity=0.245 Sum_probs=62.3
Q ss_pred CCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHH
Q 006375 422 PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGA 501 (648)
Q Consensus 422 ~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~ 501 (648)
..|...+..|.+.||.+ ..|.+|. |.+|+... .....++++...++.+.+.. ...++.++||||||.++..
T Consensus 108 ~~~~~li~~L~~~GY~~-~~dL~g~---gYDwR~~~---~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~ 178 (440)
T PLN02733 108 YYFHDMIEQLIKWGYKE-GKTLFGF---GYDFRQSN---RLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKC 178 (440)
T ss_pred HHHHHHHHHHHHcCCcc-CCCcccC---CCCccccc---cHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHH
Confidence 44667778899999977 6788864 45566421 11234677777777776542 2368999999999999999
Q ss_pred HHhhCCCc----eeEEEecCCc
Q 006375 502 VLNMRPDL----FKAAVAAVPF 519 (648)
Q Consensus 502 ~~~~~p~~----~~a~v~~~~~ 519 (648)
++.++|+. ++..|+.++.
T Consensus 179 fl~~~p~~~~k~I~~~I~la~P 200 (440)
T PLN02733 179 FMSLHSDVFEKYVNSWIAIAAP 200 (440)
T ss_pred HHHHCCHhHHhHhccEEEECCC
Confidence 88888864 4666665543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.16 Score=50.09 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=96.5
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-c-ccCccceeEEecCCeEEEEEeCCCCCCceEEEEE
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~ 157 (648)
.-++..++++|+.+++| + |++.-.-++|++.+|+..-. + -.+......||-||.++-+. +-..+|..+.
T Consensus 64 ~~svFavsl~P~~~l~a-T----GGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATG----dmsG~v~v~~ 134 (399)
T KOG0296|consen 64 TDSVFAVSLHPNNNLVA-T----GGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATG----DMSGKVLVFK 134 (399)
T ss_pred CCceEEEEeCCCCceEE-e----cCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEec----CCCccEEEEE
Confidence 34666788999776655 2 44456778999999985422 1 12234568999999665553 3345688888
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-ccceee-eEeecCCEEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVGVDT-AASHRGNHFFI 235 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-~~~~~~-~~s~dg~~l~~ 235 (648)
..++..+ ..++.+.. -.....|.|-+..|+..+. ...+|++.+..+. ..++..+ ...... .+.|||+.++-
T Consensus 135 ~stg~~~-~~~~~e~~--dieWl~WHp~a~illAG~~---DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQ-WKLDQEVE--DIEWLKWHPRAHILLAGST---DGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceE-EEeecccC--ceEEEEecccccEEEeecC---CCcEEEEECCCcc-eeeEecCCCCCcccccccCCCceEEE
Confidence 8887432 23332222 1235689998877765443 3568999888754 3444433 222332 38999998765
Q ss_pred EeccCCCCCcEEEEEeCCCC
Q 006375 236 TRRSDELFNSELLACPVDNT 255 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~ 255 (648)
... +..|.+.++++.
T Consensus 208 gy~-----dgti~~Wn~ktg 222 (399)
T KOG0296|consen 208 GYD-----DGTIIVWNPKTG 222 (399)
T ss_pred Eec-----CceEEEEecCCC
Confidence 544 246777888763
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.8 Score=49.56 Aligned_cols=200 Identities=14% Similarity=0.118 Sum_probs=121.3
Q ss_pred CCCCCEEEEEEeCCCCeEEEEEEEECCCCCe---e-ecc---ccC--c--cceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 89 SPDNKLVAYAEDTKGDEIYTVYVIDIETGTP---V-GKP---LVG--V--TASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 89 SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~---~-~~~---~~~--~--~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
..+|.+--|.....|. .+-++..-+..|.. + .+. ..+ . .+.++-|||. .++|.......+.+.|...
T Consensus 82 ~~~~~~~Yy~r~~~g~-~y~~~~R~~~~g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~k 160 (682)
T COG1770 82 YRKGPYEYYSRTEEGK-EYPIYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFK 160 (682)
T ss_pred cccCCeeEEEEecCCC-cceeEEeccCCCCCceeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEE
Confidence 4578887888777665 44566664444322 2 111 111 1 2457778999 8888887777888889999
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcccc--ccEEEEEECCCCC-ceeEeeecccc-ee--eeEeecC
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI--TRFVFYLDVSKPE-ELRVLTPRVVG-VD--TAASHRG 230 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~--~~~l~~~dl~~~~-~~~~l~~~~~~-~~--~~~s~dg 230 (648)
+|.+++.-...+ .....++.|.+|++.++++..... ...||...+.+.. .-+++....+. .. ..-+...
T Consensus 161 dL~tg~~~~d~i-----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~ 235 (682)
T COG1770 161 DLATGEELPDEI-----TNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSE 235 (682)
T ss_pred ecccccccchhh-----cccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccCC
Confidence 998873211111 112335689999999999876543 4789999888843 23444433222 22 2245566
Q ss_pred CEEEEEeccCCCCCcEEEEEeCCCCCcceeE-ecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 231 NHFFITRRSDELFNSELLACPVDNTSETTVL-IPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 231 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
++|++..+. ....+++.++.+.++...++ .+...+.. =.+...+++.++..+.+| ....++...
T Consensus 236 ~yi~i~~~~--~~tsE~~ll~a~~p~~~p~vv~pr~~g~e-Y~~eh~~d~f~i~sN~~g-knf~l~~ap 300 (682)
T COG1770 236 AYIVISLGS--HITSEVRLLDADDPEAEPKVVLPRENGVE-YSVEHGGDRFYILSNADG-KNFKLVRAP 300 (682)
T ss_pred ceEEEEcCC--CcceeEEEEecCCCCCceEEEEEcCCCcE-EeeeecCcEEEEEecCCC-cceEEEEcc
Confidence 777776643 34568888888776554444 44333332 234555778888888888 444555544
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.13 Score=51.78 Aligned_cols=151 Identities=13% Similarity=0.147 Sum_probs=96.0
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc---Cc-cceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GV-TASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~---~~-~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
+......|.|.|+..++++ ..+.+-|+.+|..+..... ++ ....++.|||-||-+.. ....|..+++
T Consensus 306 V~~ls~h~tgeYllsAs~d-----~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt----~d~~vkiwdl 376 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASND-----GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT----PDGVVKIWDL 376 (506)
T ss_pred ceeeeeccCCcEEEEecCC-----ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC----CCceEEEEEc
Confidence 5677889999999888763 2677788888886643221 22 56799999996654433 2345778888
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEee--ecccceeeeEeecCCEEEEE
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT--PRVVGVDTAASHRGNHFFIT 236 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~--~~~~~~~~~~s~dg~~l~~~ 236 (648)
.... ...-|..+... .-.+.++.+|-||+..+++ ..+.++||..-+.++.+. ...+-..+.++..|..|.+.
T Consensus 377 ks~~--~~a~Fpght~~-vk~i~FsENGY~Lat~add---~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 377 KSQT--NVAKFPGHTGP-VKAISFSENGYWLATAADD---GSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred CCcc--ccccCCCCCCc-eeEEEeccCceEEEEEecC---CeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 7652 33344333222 3367899999998876553 338899997654222222 12223456788889887766
Q ss_pred eccCCCCCcEEEEEeCC
Q 006375 237 RRSDELFNSELLACPVD 253 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~ 253 (648)
.+ ..++|.++-.
T Consensus 451 g~-----~l~Vy~~~k~ 462 (506)
T KOG0289|consen 451 GS-----DLQVYICKKK 462 (506)
T ss_pred cc-----eeEEEEEecc
Confidence 33 2577777643
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0044 Score=66.03 Aligned_cols=140 Identities=14% Similarity=0.066 Sum_probs=76.6
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCch-----------------hHHHHHHCCCEEEEEc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS-----------------SRLSLLDRGFIFAIAQ 442 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~-----------------~~~~l~~~G~~v~~~~ 442 (648)
.+....+..+..|++..++ ...+.|+||++.||||.+....+-. ....|.+ -..++.+|
T Consensus 17 ~~~~~~~~~lfyw~~~s~~---~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~-~an~l~iD 92 (415)
T PF00450_consen 17 PVNDNENAHLFYWFFESRN---DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNK-FANLLFID 92 (415)
T ss_dssp EECTTTTEEEEEEEEE-SS---GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGG-TSEEEEE-
T ss_pred ecCCCCCcEEEEEEEEeCC---CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccccc-ccceEEEe
Confidence 3444466778877554433 2456799999999998765432100 0124444 47889999
Q ss_pred cCCCCCCChhhhhcccccCCCCcHhHHHHHHHHH-HHcCCCCCCeEEEEeeChhHHHHH----HHHhhC------CCcee
Q 006375 443 IRGGGELGRQWYENGKFLKKKNTFTDFIACAEYL-IKNCYCTKEKLCIEGRSAGGLLIG----AVLNMR------PDLFK 511 (648)
Q Consensus 443 ~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l-~~~~~~d~~~i~i~G~S~GG~l~~----~~~~~~------p~~~~ 511 (648)
.+-+.|+...-........-....+|+..+++.. ...+......+.|+|.|+||..+- +++.+. +-.++
T Consensus 93 ~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLk 172 (415)
T PF00450_consen 93 QPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLK 172 (415)
T ss_dssp -STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEE
T ss_pred ecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccc
Confidence 7766666543222111111123345555555433 333444556999999999998543 333433 23488
Q ss_pred EEEecCCccccc
Q 006375 512 AAVAAVPFVDVL 523 (648)
Q Consensus 512 a~v~~~~~~d~~ 523 (648)
++++..|++|..
T Consensus 173 Gi~IGng~~dp~ 184 (415)
T PF00450_consen 173 GIAIGNGWIDPR 184 (415)
T ss_dssp EEEEESE-SBHH
T ss_pred cceecCcccccc
Confidence 999999998854
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0039 Score=60.15 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=65.6
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCC--EEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGF--IFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 481 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~--~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 481 (648)
.+..++|++|| |...........++.....|+ .++.+..+..|.. ..|..+ ...-..+-.++...++.|.+.
T Consensus 16 ~~~~vlvfVHG-yn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~~d--~~~a~~s~~~l~~~L~~L~~~-- 89 (233)
T PF05990_consen 16 PDKEVLVFVHG-YNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYFYD--RESARFSGPALARFLRDLARA-- 89 (233)
T ss_pred CCCeEEEEEeC-CCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhhhh--hhhHHHHHHHHHHHHHHHHhc--
Confidence 34679999999 444332222222232223333 7888888866542 122211 111123446666667777665
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhC----C-----CceeEEEecCCcccc
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMR----P-----DLFKAAVAAVPFVDV 522 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~----p-----~~~~a~v~~~~~~d~ 522 (648)
....+|-|++||||+.++..++.+- + ..|.-+|+.+|-+|.
T Consensus 90 ~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~ 139 (233)
T PF05990_consen 90 PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDN 139 (233)
T ss_pred cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCH
Confidence 2348999999999999988776641 1 245666677765553
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0013 Score=57.47 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc---CCCCCCCcccccccCCC---
Q 006375 471 ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML---DPTIPLTTAEWEEWGDP--- 544 (648)
Q Consensus 471 ~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~---~~~~~~~~~~~~~~g~~--- 544 (648)
+--+|++++.. |.+..+.|.||||+.++....++|++|..+|+.+|+.|...+.. +... -|..|
T Consensus 89 AyerYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yyddDv--------~ynsP~dy 158 (227)
T COG4947 89 AYERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDDDV--------YYNSPSDY 158 (227)
T ss_pred HHHHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccCce--------eecChhhh
Confidence 34456666543 57789999999999999999999999999999999998654321 1110 01111
Q ss_pred ----CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCC
Q 006375 545 ----WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 600 (648)
Q Consensus 545 ----~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~ 600 (648)
.+|...+ .++++ .+.+.+|..|+..+ +..++-+.|.+.+++.
T Consensus 159 lpg~~dp~~l~---------rlr~~---~~vfc~G~e~~~L~--~~~~L~~~l~dKqipa 204 (227)
T COG4947 159 LPGLADPFRLE---------RLRRI---DMVFCIGDEDPFLD--NNQHLSRLLSDKQIPA 204 (227)
T ss_pred ccCCcChHHHH---------HHhhc---cEEEEecCcccccc--chHHHHHHhccccccH
Confidence 1221111 12222 47788899998755 4567777887766665
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.011 Score=64.76 Aligned_cols=116 Identities=13% Similarity=0.129 Sum_probs=73.4
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee---c------cc-cCccceeEEecCC-eEEEEEeCCCC
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG---K------PL-VGVTASVEWAGNE-ALVYITMDEIL 148 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~---~------~~-~~~~~~~~WspDg-~l~y~~~~~~~ 148 (648)
...+..+.++|.|++||.+. .+| +|+|||++++.... . .+ ..+...++|+||| .+++...+.
T Consensus 138 ~apVl~l~~~p~~~fLAvss-~dG----~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-- 210 (933)
T KOG1274|consen 138 DAPVLQLSYDPKGNFLAVSS-CDG----KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-- 210 (933)
T ss_pred CCceeeeeEcCCCCEEEEEe-cCc----eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC--
Confidence 35677899999999999875 345 79999999876431 1 11 1235669999998 777765432
Q ss_pred CCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCC
Q 006375 149 RPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP 209 (648)
Q Consensus 149 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~ 209 (648)
.|..++..+-...-.+. ......-+..++|||.|+||+... -.+.|-++|.++-
T Consensus 211 ---~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG~YiAAs~---~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 211 ---TVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNGKYIAAST---LDGQILVWNVDTH 264 (933)
T ss_pred ---eEEEEccCCceeheeec-ccccccceEEEEEcCCCcEEeeec---cCCcEEEEecccc
Confidence 25555554442111111 111122255789999999997533 3467888887753
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.44 Score=45.49 Aligned_cols=198 Identities=13% Similarity=0.089 Sum_probs=112.5
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCC-----CeeeccccC---ccceeEEecCCeEEEEEeCCCCCCce
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG-----TPVGKPLVG---VTASVEWAGNEALVYITMDEILRPDK 152 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g-----~~~~~~~~~---~~~~~~WspDg~l~y~~~~~~~~~~~ 152 (648)
-.+..++..+++.-+.+..+++ ..+.++++... .++. .+.+ ....++-++||.++++.. ....
T Consensus 16 d~Vt~la~~~~~~~~l~sasrD----k~ii~W~L~~dd~~~G~~~r-~~~GHsH~v~dv~~s~dg~~alS~s----wD~~ 86 (315)
T KOG0279|consen 16 DWVTALAIKIKNSDILVSASRD----KTIIVWKLTSDDIKYGVPVR-RLTGHSHFVSDVVLSSDGNFALSAS----WDGT 86 (315)
T ss_pred ceEEEEEeecCCCceEEEcccc----eEEEEEEeccCccccCceee-eeeccceEecceEEccCCceEEecc----ccce
Confidence 4566778888888888887653 46778877543 2222 2222 245688999996666543 2345
Q ss_pred EEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-cccee-eeEeecC
Q 006375 153 AWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVGVD-TAASHRG 230 (648)
Q Consensus 153 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-~~~~~-~~~s~dg 230 (648)
++++|+.++ +....|..+ ..-.+++++|+|.+.|+-. +. +.-|-+++.-+....+..... .+.+. ..|+|..
T Consensus 87 lrlWDl~~g--~~t~~f~GH-~~dVlsva~s~dn~qivSG--Sr-DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 87 LRLWDLATG--ESTRRFVGH-TKDVLSVAFSTDNRQIVSG--SR-DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred EEEEEecCC--cEEEEEEec-CCceEEEEecCCCceeecC--CC-cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 889999988 344555544 2345678999999998732 22 234556666554312211111 23344 3489987
Q ss_pred CEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 231 NHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 231 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
...++++... ...+-+.|+++.+..+-.+.+... +..+.+.+|+-...+ -+...++.+++++.
T Consensus 161 ~~p~Ivs~s~---DktvKvWnl~~~~l~~~~~gh~~~--v~t~~vSpDGslcas-Ggkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 161 SNPIIVSASW---DKTVKVWNLRNCQLRTTFIGHSGY--VNTVTVSPDGSLCAS-GGKDGEAMLWDLNE 223 (315)
T ss_pred CCcEEEEccC---CceEEEEccCCcchhhcccccccc--EEEEEECCCCCEEec-CCCCceEEEEEccC
Confidence 6666666531 134556677664333324444443 344444444322222 11234788889984
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.23 Score=51.94 Aligned_cols=198 Identities=11% Similarity=0.053 Sum_probs=113.5
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc-cCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
-.+..++++|+++..... . ...|.++|.++........ ...-..++|+||+ .+|...... ....+...+-.+
T Consensus 76 p~~i~v~~~~~~vyv~~~-~---~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~--~~~~vsvid~~t 149 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTG-D---SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN--GNNTVSVIDAAT 149 (381)
T ss_pred ccceeeCCCCCeEEEecC-C---CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc--CCceEEEEeCCC
Confidence 346788999997654432 2 2478999977766554322 2234569999999 665543321 345677777666
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeE------eeecccceeeeEeecCCEEE
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV------LTPRVVGVDTAASHRGNHFF 234 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~------l~~~~~~~~~~~s~dg~~l~ 234 (648)
... ...++....+ .+..++|+|.++++.. ...+.|.++|.++.. ... +..........++++|..+|
T Consensus 150 ~~~-~~~~~vG~~P---~~~a~~p~g~~vyv~~--~~~~~v~vi~~~~~~-v~~~~~~~~~~~~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 150 NKV-TATIPVGNTP---TGVAVDPDGNKVYVTN--SDDNTVSVIDTSGNS-VVRGSVGSLVGVGTGPAGIAVDPDGNRVY 222 (381)
T ss_pred CeE-EEEEecCCCc---ceEEECCCCCeEEEEe--cCCCeEEEEeCCCcc-eeccccccccccCCCCceEEECCCCCEEE
Confidence 522 1223332223 5678999999988754 556889999977765 332 11111112345899999877
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccce--EEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 235 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQD--IQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
..-... ....+.++|........+..+.... ...+ +.+.+..+++... ....+.+++..
T Consensus 223 V~~~~~--~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~--~~~~V~vid~~ 283 (381)
T COG3391 223 VANDGS--GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANS--QGGTVSVIDGA 283 (381)
T ss_pred EEeccC--CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEec--CCCeEEEEeCC
Confidence 665542 2357888887663222222232222 2333 4444444444433 34566666654
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0057 Score=58.65 Aligned_cols=101 Identities=17% Similarity=0.209 Sum_probs=55.0
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHH--------HHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHH
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSL--------LDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK 478 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l--------~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 478 (648)
..||++||..|+... +......+ ....+.++..|+.... ..++ |.... ...+-+..+++++.+
T Consensus 5 ~pVlFIhG~~Gs~~q--~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~---s~~~--g~~l~--~q~~~~~~~i~~i~~ 75 (225)
T PF07819_consen 5 IPVLFIHGNAGSYKQ--VRSLASELQRKALLNDNSSHFDFFTVDFNEEL---SAFH--GRTLQ--RQAEFLAEAIKYILE 75 (225)
T ss_pred CEEEEECcCCCCHhH--HHHHHHHHhhhhhhccCccceeEEEeccCccc---cccc--cccHH--HHHHHHHHHHHHHHH
Confidence 469999995554221 11111111 1125778888876422 1111 00010 112344556666655
Q ss_pred cC---CCCCCeEEEEeeChhHHHHHHHHhhCC---CceeEEEec
Q 006375 479 NC---YCTKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVAA 516 (648)
Q Consensus 479 ~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~~~a~v~~ 516 (648)
.. ...+.+|.++||||||.++-.++...+ +.++.+|..
T Consensus 76 ~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl 119 (225)
T PF07819_consen 76 LYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITL 119 (225)
T ss_pred hhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEE
Confidence 43 467899999999999988877776533 345555543
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.49 Score=45.53 Aligned_cols=197 Identities=13% Similarity=0.103 Sum_probs=105.4
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-eccccCc-cceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GKPLVGV-TASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-~~~~~~~-~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
-.+..+.||+|.|+|.-++ .+| .+-|||.-|...+ ..+.+.. .-..+++|.| .++-...++ ...||...
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaS-qDG----klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN---~Csiy~ls 127 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSAS-QDG----KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN---KCSIYPLS 127 (343)
T ss_pred cceeeeEecCCcCeEEeec-cCC----eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc---eeEEEecc
Confidence 3566789999999987544 445 7889998876543 3344443 3458899999 776655432 23455444
Q ss_pred CCCCCC--CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEee-cCCEE
Q 006375 158 LEADQS--NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASH-RGNHF 233 (648)
Q Consensus 158 l~~~~~--~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~-dg~~l 233 (648)
...... .-...+.. ...|..-..+.+|+. |+- ..++...-++|+++++..+.+.....++ ...++| +++++
T Consensus 128 ~~d~~g~~~v~r~l~g-HtgylScC~f~dD~~-ilT---~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAG-HTGYLSCCRFLDDNH-ILT---GSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred cccccccceeeeeecC-ccceeEEEEEcCCCc-eEe---cCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 321110 01111111 133444456677764 332 2244567788999987233333333333 345788 66643
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEE-EEecCCeeEEEEEEcCC
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAV-YEREGGLQKITTYRLPA 299 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~l~v~~~~~ 299 (648)
++.. -...-.+.|+..+...+ .++.. +..|.++.+++++-.+ ...+++.- ++|++..
T Consensus 203 --vSg~---cD~~aklWD~R~~~c~q-tF~gh-esDINsv~ffP~G~afatGSDD~tc--RlyDlRa 260 (343)
T KOG0286|consen 203 --VSGG---CDKSAKLWDVRSGQCVQ-TFEGH-ESDINSVRFFPSGDAFATGSDDATC--RLYDLRA 260 (343)
T ss_pred --Eecc---cccceeeeeccCcceeE-eeccc-ccccceEEEccCCCeeeecCCCcee--EEEeecC
Confidence 3321 12234556776533232 34332 2346777777765433 44455543 4456653
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.31 Score=51.44 Aligned_cols=236 Identities=13% Similarity=0.093 Sum_probs=127.9
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc-cCccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
+-+.-+.|| ....||.+.. ..||+|+..+++.+.. .+ .+....+.|+++| .|+....+ ..|.++|
T Consensus 178 fY~nlldWs-s~n~laValg------~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD 245 (484)
T KOG0305|consen 178 FYLNLLDWS-SANVLAVALG------QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSD-----GTVQIWD 245 (484)
T ss_pred HhhhHhhcc-cCCeEEEEec------ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecC-----CeEEEEe
Confidence 344557899 6667888763 5899999999997654 33 3445679999999 77665432 3477777
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeec-ccceeeeEeecCCEEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPR-VVGVDTAASHRGNHFFI 235 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~-~~~~~~~~s~dg~~l~~ 235 (648)
+.... ...-+..........++|.. .+ +.+..+ ...|...|+...+ ....+... ....-..|++|+.+++-
T Consensus 246 ~~~~k--~~~~~~~~h~~rvg~laW~~---~~-lssGsr-~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lAS 318 (484)
T KOG0305|consen 246 VKEQK--KTRTLRGSHASRVGSLAWNS---SV-LSSGSR-DGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLAS 318 (484)
T ss_pred hhhcc--ccccccCCcCceeEEEeccC---ce-EEEecC-CCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeecc
Confidence 76542 22222221122333566762 12 222222 2445566665544 11112111 11122459999987653
Q ss_pred EeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeec
Q 006375 236 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEF 315 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~ 315 (648)
-.|+ ..+++.|...+.....+..+...+...+|.+....++...--.....|.+++... |..+ .-
T Consensus 319 GgnD-----N~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i---------~~ 383 (484)
T KOG0305|consen 319 GGND-----NVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARI---------DS 383 (484)
T ss_pred CCCc-----cceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEe---------cc
Confidence 3332 3677777755343333666666655556666556666555444456788888873 3322 11
Q ss_pred CCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEE
Q 006375 316 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDY 350 (648)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~ 350 (648)
.+....|..+.+.+...++..+..-...-=+||.|
T Consensus 384 vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 384 VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 11111244455666666666555444332234444
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.48 Score=45.07 Aligned_cols=157 Identities=16% Similarity=0.171 Sum_probs=82.0
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-eccccCc---cceeEEecCC-eEEEEEeCCCCCCceEE
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GKPLVGV---TASVEWAGNE-ALVYITMDEILRPDKAW 154 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-~~~~~~~---~~~~~WspDg-~l~y~~~~~~~~~~~l~ 154 (648)
.-++..++|||.|++||-.+-. .++.|+.-..++.. ..++++. .-.++||++| .|+-.+. ...||
T Consensus 61 krsVRsvAwsp~g~~La~aSFD-----~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR-----DKSVW 130 (312)
T KOG0645|consen 61 KRSVRSVAWSPHGRYLASASFD-----ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR-----DKSVW 130 (312)
T ss_pred hheeeeeeecCCCcEEEEeecc-----ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC-----CCeEE
Confidence 4678999999999999987642 34555554444432 2244442 3459999999 6654332 34588
Q ss_pred EEECCCCCCCc-EEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee---cccce-eeeEeec
Q 006375 155 LHKLEADQSND-ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP---RVVGV-DTAASHR 229 (648)
Q Consensus 155 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~---~~~~~-~~~~s~d 229 (648)
.+.+..+..-+ .-+++++... .=.+.|.|-.. |+++.+-.++-.+|.-+. +.. +..+.. +..-+ ...|++.
T Consensus 131 iWe~deddEfec~aVL~~HtqD-VK~V~WHPt~d-lL~S~SYDnTIk~~~~~~-ddd-W~c~~tl~g~~~TVW~~~F~~~ 206 (312)
T KOG0645|consen 131 IWEIDEDDEFECIAVLQEHTQD-VKHVIWHPTED-LLFSCSYDNTIKVYRDED-DDD-WECVQTLDGHENTVWSLAFDNI 206 (312)
T ss_pred EEEecCCCcEEEEeeecccccc-ccEEEEcCCcc-eeEEeccCCeEEEEeecC-CCC-eeEEEEecCccceEEEEEecCC
Confidence 88887542111 1233322111 11346777543 444443333344444433 333 333322 21111 1236777
Q ss_pred CCEEEEEeccCCCCCcEEEE--EeCC
Q 006375 230 GNHFFITRRSDELFNSELLA--CPVD 253 (648)
Q Consensus 230 g~~l~~~~~~~~~~~~~l~~--~~~~ 253 (648)
|..+.-.++. ...+|++ +++.
T Consensus 207 G~rl~s~sdD---~tv~Iw~~~~~~~ 229 (312)
T KOG0645|consen 207 GSRLVSCSDD---GTVSIWRLYTDLS 229 (312)
T ss_pred CceEEEecCC---cceEeeeeccCcc
Confidence 8776655553 3456666 5554
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.024 Score=63.20 Aligned_cols=78 Identities=24% Similarity=0.367 Sum_probs=50.7
Q ss_pred EEEeeEEeCCCCCEEEE-EEeCC--CCeEEEEEEEECCCCC--eeeccccCccceeEE--ecCC--eEEEEEeCCCCC--
Q 006375 81 YSVGCFQVSPDNKLVAY-AEDTK--GDEIYTVYVIDIETGT--PVGKPLVGVTASVEW--AGNE--ALVYITMDEILR-- 149 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~-~~~~~--G~e~~~l~v~dl~~g~--~~~~~~~~~~~~~~W--spDg--~l~y~~~~~~~~-- 149 (648)
..+-+|.|||||++||| ++-.+ | ...|||.+|.+.. .+....+++.- +.| .+.| .|.|++...++.
T Consensus 350 ~~i~sP~~SPDG~~vAY~ts~e~~~g--~s~vYv~~L~t~~~~~vkl~ve~aai-prwrv~e~gdt~ivyv~~a~nn~d~ 426 (912)
T TIGR02171 350 ISVYHPDISPDGKKVAFCTGIEGLPG--KSSVYVRNLNASGSGLVKLPVENAAI-PRWRVLENGDTVIVYVSDASNNKDD 426 (912)
T ss_pred CceecCcCCCCCCEEEEEEeecCCCC--CceEEEEehhccCCCceEeecccccc-cceEecCCCCeEEEEEcCCCCCcch
Confidence 35568999999999999 54444 4 6789999998743 33344555432 666 5767 788887644332
Q ss_pred ----CceEEEEECCCC
Q 006375 150 ----PDKAWLHKLEAD 161 (648)
Q Consensus 150 ----~~~l~~~~l~~~ 161 (648)
...-|.+....+
T Consensus 427 ~~~~~~stw~v~f~~g 442 (912)
T TIGR02171 427 ATFAAYSTWQVPFANG 442 (912)
T ss_pred hhhhhcceEEEEecCC
Confidence 234566655544
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.066 Score=51.91 Aligned_cols=176 Identities=15% Similarity=0.093 Sum_probs=83.7
Q ss_pred EEEEECCCCCeee-----ccccCc--cceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEee----cC--C
Q 006375 109 VYVIDIETGTPVG-----KPLVGV--TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHE----KD--D 174 (648)
Q Consensus 109 l~v~dl~~g~~~~-----~~~~~~--~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~----~~--~ 174 (648)
|.+||.-+|+.+. +..+.+ ..+++|+||| +| |..+. .-|...++..+. .+-.++.. +. .
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeql-faGyk-----rcirvFdt~RpG-r~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQL-FAGYK-----RCIRVFDTSRPG-RDCPVYTTVTKGKFGQK 207 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeE-eeccc-----ceEEEeeccCCC-CCCcchhhhhccccccc
Confidence 5566666666552 111111 3358999999 66 44442 224444442221 12222211 11 1
Q ss_pred CeEEEEEeCCC-CcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEeecCCEEEEEeccCCCCCcEEEEEeC
Q 006375 175 IYSLGLQASES-KKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRRSDELFNSELLACPV 252 (648)
Q Consensus 175 ~~~~~~~~s~D-g~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 252 (648)
....-++++|- .+-+++.+. .....||.-| +..+...+-.+..++. ..|.+||..|+.-+..+ -+|...|+
T Consensus 208 giisc~a~sP~~~~~~a~gsY-~q~~giy~~~--~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~----dkIl~WDi 280 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSY-GQRVGIYNDD--GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKD----DKILCWDI 280 (406)
T ss_pred ceeeeeeccCCCCcceeeecc-cceeeeEecC--CCCceeeecccCCCeeeEEeccCcCeecccccCC----CeEEEEee
Confidence 23334567774 334444322 1223455443 3333555555666655 46999999887666543 37888888
Q ss_pred CCCCccee-EecCCCCcc-cceEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 253 DNTSETTV-LIPHRESVK-LQDIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 253 ~~~~~~~~-~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
.......| +-.+..+.. -.-|+.+++.-++..- +....+.+|+++.
T Consensus 281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG-~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDTNQRILFDLDPKGEILASG-DTDGSVRVWDLKD 328 (406)
T ss_pred hhccchhhhhhhhccCccceEEEecCCCCceeecc-CCCccEEEEecCC
Confidence 65333333 222222111 1123444433322221 1234577778774
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.11 Score=56.62 Aligned_cols=148 Identities=13% Similarity=0.157 Sum_probs=76.3
Q ss_pred eeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCC-CCcEEEEEEccccccEEEEEECCC
Q 006375 130 SVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSK 208 (648)
Q Consensus 130 ~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~dl~~ 208 (648)
.+.||.++.|+=.+.|. .|.++.++.. +=+.+|... .|..-+++.| |.+|++- .+ -+..+.++++..
T Consensus 374 DlSWSKn~fLLSSSMDK-----TVRLWh~~~~--~CL~~F~Hn--dfVTcVaFnPvDDryFiS--GS-LD~KvRiWsI~d 441 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMDK-----TVRLWHPGRK--ECLKVFSHN--DFVTCVAFNPVDDRYFIS--GS-LDGKVRLWSISD 441 (712)
T ss_pred ecccccCCeeEeccccc-----cEEeecCCCc--ceeeEEecC--CeeEEEEecccCCCcEee--cc-cccceEEeecCc
Confidence 47888887665544433 2666677765 456777665 3555677888 6677652 22 234566666665
Q ss_pred CCceeEeeecccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCc-ceeEecCC-----CCcccceEEEeC---C
Q 006375 209 PEELRVLTPRVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSE-TTVLIPHR-----ESVKLQDIQLFI---D 278 (648)
Q Consensus 209 ~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~---~ 278 (648)
.+ +..-+.-.+-+ ...++|||+..++-+-. +....++..+... ..+-+... .+..|.++.++. +
T Consensus 442 ~~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~-----G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~ 515 (712)
T KOG0283|consen 442 KK-VVDWNDLRDLITAVCYSPDGKGAVIGTFN-----GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD 515 (712)
T ss_pred Ce-eEeehhhhhhheeEEeccCCceEEEEEec-----cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC
Confidence 54 22111111111 23478888866655543 2233333322110 01111111 122477777764 3
Q ss_pred EEEEEEecCCeeEEEEEEcC
Q 006375 279 HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 279 ~l~~~~~~~~~~~l~v~~~~ 298 (648)
.+++..++ ++|++++..
T Consensus 516 ~vLVTSnD---SrIRI~d~~ 532 (712)
T KOG0283|consen 516 EVLVTSND---SRIRIYDGR 532 (712)
T ss_pred eEEEecCC---CceEEEecc
Confidence 45555443 678888874
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=1.5 Score=51.10 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=83.3
Q ss_pred EEeeEEeCCC-CCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEec-CCeEEEEEeCCCCCCceEEEEE
Q 006375 82 SVGCFQVSPD-NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAG-NEALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 82 ~~~~~~~SPD-G~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~Wsp-Dg~l~y~~~~~~~~~~~l~~~~ 157 (648)
.+..+.|+|. +++||-. ..+| +|.+||+.+++.+.... .+....++|+| |+.++.+...+ ..|..++
T Consensus 534 ~v~~l~~~~~~~~~las~-~~Dg----~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D----g~v~iWd 604 (793)
T PLN00181 534 KLSGICWNSYIKSQVASS-NFEG----VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD----GSVKLWS 604 (793)
T ss_pred ceeeEEeccCCCCEEEEE-eCCC----eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC----CEEEEEE
Confidence 4567788775 5666543 3334 79999999887654211 22244699997 55665665432 3477888
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEe-CCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeeccccee-eeEeecCCEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQA-SESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVD-TAASHRGNHFF 234 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~-s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~~~~-~~~s~dg~~l~ 234 (648)
+.++. ....+... .....+.| +++|.+|+..+. +..|+++|+.+.. ....+......+. ..|. ++..|+
T Consensus 605 ~~~~~--~~~~~~~~--~~v~~v~~~~~~g~~latgs~---dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv 676 (793)
T PLN00181 605 INQGV--SIGTIKTK--ANICCVQFPSESGRSLAFGSA---DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV 676 (793)
T ss_pred CCCCc--EEEEEecC--CCeEEEEEeCCCCCEEEEEeC---CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE
Confidence 87652 22233222 12234556 467888776443 3579999997654 2223333322232 2354 666554
Q ss_pred EEeccCCCCCcEEEEEeCC
Q 006375 235 ITRRSDELFNSELLACPVD 253 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~ 253 (648)
..+.+ ..|...|+.
T Consensus 677 s~s~D-----~~ikiWd~~ 690 (793)
T PLN00181 677 SSSTD-----NTLKLWDLS 690 (793)
T ss_pred EEECC-----CEEEEEeCC
Confidence 44432 245555654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.69 Score=44.55 Aligned_cols=195 Identities=12% Similarity=0.090 Sum_probs=99.0
Q ss_pred cceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEEC
Q 006375 128 TASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV 206 (648)
Q Consensus 128 ~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl 206 (648)
...+.|++|+ .|+-.++| .+|..++.-|..+... . .....|.+..+++|.|.+++... -++.--++++
T Consensus 58 i~~~~ws~Dsr~ivSaSqD-----GklIvWDs~TtnK~ha--i-pl~s~WVMtCA~sPSg~~VAcGG---LdN~Csiy~l 126 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQD-----GKLIVWDSFTTNKVHA--I-PLPSSWVMTCAYSPSGNFVACGG---LDNKCSIYPL 126 (343)
T ss_pred eeeeEecCCcCeEEeeccC-----CeEEEEEcccccceeE--E-ecCceeEEEEEECCCCCeEEecC---cCceeEEEec
Confidence 3459999999 66544332 3577888776533222 1 12346888899999999987532 1233334455
Q ss_pred CCC--CceeEeeecccceee-----eEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC-C
Q 006375 207 SKP--EELRVLTPRVVGVDT-----AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI-D 278 (648)
Q Consensus 207 ~~~--~~~~~l~~~~~~~~~-----~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 278 (648)
.+. +...++.....+..- .+-.|+ +|+-.+ +.......|++++...+....|..+ +.++++.+ +
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~S-----GD~TCalWDie~g~~~~~f~GH~gD--V~slsl~p~~ 198 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGS-----GDMTCALWDIETGQQTQVFHGHTGD--VMSLSLSPSD 198 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCCC-ceEecC-----CCceEEEEEcccceEEEEecCCccc--EEEEecCCCC
Confidence 443 212233222233221 233444 343222 2356778898874333323334444 45555544 3
Q ss_pred -EEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 279 -HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 279 -~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
..++....+... .+|++... . -.-.|+.....|..+.+-|++. .|...|...--++ ||+...+
T Consensus 199 ~ntFvSg~cD~~a--klWD~R~~-~--------c~qtF~ghesDINsv~ffP~G~--afatGSDD~tcRl--yDlRaD~ 262 (343)
T KOG0286|consen 199 GNTFVSGGCDKSA--KLWDVRSG-Q--------CVQTFEGHESDINSVRFFPSGD--AFATGSDDATCRL--YDLRADQ 262 (343)
T ss_pred CCeEEecccccce--eeeeccCc-c--------eeEeecccccccceEEEccCCC--eeeecCCCceeEE--EeecCCc
Confidence 344555555444 45566532 2 1234554443455555555555 3444444444444 5555544
|
|
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0067 Score=60.89 Aligned_cols=130 Identities=20% Similarity=0.315 Sum_probs=82.2
Q ss_pred eEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCch---hHHHHHH-CCCEEEEEccCCCCC---CChhhhhccc-
Q 006375 387 TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---SRLSLLD-RGFIFAIAQIRGGGE---LGRQWYENGK- 458 (648)
Q Consensus 387 ~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~-~G~~v~~~~~rG~g~---~g~~~~~~~~- 458 (648)
.+.+..++....++++ ++.|+++|. |.-|. .. .|.. .+..++. .+-.++.+..|-=|+ +|.+=+....
T Consensus 63 ~tF~qRylin~~fw~~-g~gPIffYt-GNEGd-ie-~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~h 138 (492)
T KOG2183|consen 63 KTFDQRYLINDDFWKK-GEGPIFFYT-GNEGD-IE-WFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARH 138 (492)
T ss_pred cceeeEEEEecccccC-CCCceEEEe-CCccc-HH-HHHhccchHHhhhHhhCceEEEeehhccccCCCCcchhccChhh
Confidence 4455565666555333 446776665 42221 11 1221 1233443 488889999885443 3333111111
Q ss_pred --ccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeE-EEecCCcc
Q 006375 459 --FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKA-AVAAVPFV 520 (648)
Q Consensus 459 --~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a-~v~~~~~~ 520 (648)
-..-++.+.|+...+.+|+.........|.++|+|+||+|+++.-..+|+++.+ .++.+|++
T Consensus 139 lgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 139 LGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVL 203 (492)
T ss_pred hccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceE
Confidence 123346889999999999988666778999999999999999999999997664 44566755
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.6 Score=55.52 Aligned_cols=196 Identities=15% Similarity=0.141 Sum_probs=105.2
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc------------------cCccceeEEecCC-eEEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL------------------VGVTASVEWAGNE-ALVYIT 143 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~------------------~~~~~~~~WspDg-~l~y~~ 143 (648)
-.++.++++|+.| |..|..+ ..|+++|+.++....... -+.-..++++|++ .+|++
T Consensus 626 P~GIavd~~gn~L-YVaDt~n---~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa- 700 (1057)
T PLN02919 626 PQGLAYNAKKNLL-YVADTEN---HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA- 700 (1057)
T ss_pred CcEEEEeCCCCEE-EEEeCCC---ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE-
Confidence 3577888988875 4445433 578889988776542210 0011348899976 66554
Q ss_pred eCCCCCCceEEEEECCCCCCCcEEEEeecC--------------CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCC
Q 006375 144 MDEILRPDKAWLHKLEADQSNDICLYHEKD--------------DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP 209 (648)
Q Consensus 144 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~--------------~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~ 209 (648)
. ....+|+.++..++. ...+.... ...-.+++++|||++|++.. ...+.|+++|++++
T Consensus 701 d---~~~~~I~v~d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg 772 (1057)
T PLN02919 701 M---AGQHQIWEYNISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTG 772 (1057)
T ss_pred E---CCCCeEEEEECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCC
Confidence 3 234568888876541 12221100 01123578999999887743 34578999999876
Q ss_pred CceeEeeecc-------------cc----------eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCC
Q 006375 210 EELRVLTPRV-------------VG----------VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE 266 (648)
Q Consensus 210 ~~~~~l~~~~-------------~~----------~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (648)
. ...+.... ++ ....++++|. +|+. +. .+.+|.++|.++. ....+.....
T Consensus 773 ~-~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVA-Ds---~N~rIrviD~~tg-~v~tiaG~G~ 845 (1057)
T PLN02919 773 G-SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVA-DS---YNHKIKKLDPATK-RVTTLAGTGK 845 (1057)
T ss_pred c-EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEE-EC---CCCEEEEEECCCC-eEEEEeccCC
Confidence 5 33322110 00 1123677775 5444 32 3568888887652 2221221110
Q ss_pred ------------CcccceEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 267 ------------SVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 267 ------------~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
-....++.++.++-+++ .+....+|.+++++.
T Consensus 846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyV-aDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLALGENGRLFV-ADTNNSLIRYLDLNK 889 (1057)
T ss_pred cCCCCCcccccccCCceEEEEeCCCCEEE-EECCCCEEEEEECCC
Confidence 01244556655433222 233445788888874
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.069 Score=53.34 Aligned_cols=107 Identities=14% Similarity=0.067 Sum_probs=52.1
Q ss_pred EEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCc
Q 006375 179 GLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSE 257 (648)
Q Consensus 179 ~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~ 257 (648)
.+.|.|.-..|+ + .+++ +-+-++|..++..+..+.....-+ ...|++++.+|+-.+.+ ..+.++|+..-.+
T Consensus 227 svdWHP~kgLia-s-gskD-nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD-----~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 227 SVDWHPTKGLIA-S-GSKD-NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD-----QSCKVFDIRTMKE 298 (464)
T ss_pred eeccCCccceeE-E-ccCC-ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCC-----ceEEEEehhHhHH
Confidence 356777644333 2 2222 266777887765111122221112 24589999877655443 2455667653222
Q ss_pred ceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEE
Q 006375 258 TTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKIT 293 (648)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 293 (648)
....-.+..++.-..+.+....++...--+|.-..+
T Consensus 299 l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~ 334 (464)
T KOG0284|consen 299 LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHW 334 (464)
T ss_pred HHHhhcchhhheeeccccccccceeeccCCCceEEE
Confidence 221222333433344566666776665555543333
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.014 Score=61.25 Aligned_cols=152 Identities=13% Similarity=0.157 Sum_probs=87.7
Q ss_pred EEeeEEeCCCC-CEEEEEEeCCCCeEEEEEEEECCCCCeeec---cccCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 82 SVGCFQVSPDN-KLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 82 ~~~~~~~SPDG-~~la~~~~~~G~e~~~l~v~dl~~g~~~~~---~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
.+..++|.|=- ..||.++ -..+|.+||+++++.... ..+.++ +++||||| .++-+..|. .|+.|
T Consensus 679 KI~slRfHPLAadvLa~as-----yd~Ti~lWDl~~~~~~~~l~gHtdqIf-~~AWSpdGr~~AtVcKDg-----~~rVy 747 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVAS-----YDSTIELWDLANAKLYSRLVGHTDQIF-GIAWSPDGRRIATVCKDG-----TLRVY 747 (1012)
T ss_pred eEEEEEecchhhhHhhhhh-----ccceeeeeehhhhhhhheeccCcCcee-EEEECCCCcceeeeecCc-----eEEEe
Confidence 45677888732 2233222 246899999999876532 223344 59999999 777665543 46677
Q ss_pred ECCCCCCCcEEEEeecCCC--eEEEEEeCCCCcEEEEEEccc-cccEEEEEECCCCCceeEeeecccce-----eeeEee
Q 006375 157 KLEADQSNDICLYHEKDDI--YSLGLQASESKKFLFIASESK-ITRFVFYLDVSKPEELRVLTPRVVGV-----DTAASH 228 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~--~~~~~~~s~Dg~~l~~~~~~~-~~~~l~~~dl~~~~~~~~l~~~~~~~-----~~~~s~ 228 (648)
...+. ...+++.+.+. -...+.|.=||++|++..-++ ....|-++|.++-. ...|....-++ ..+.++
T Consensus 748 ~Prs~---e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~-~~pl~t~~lDvaps~LvP~YD~ 823 (1012)
T KOG1445|consen 748 EPRSR---EQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD-LRPLYTQVLDVAPSPLVPHYDY 823 (1012)
T ss_pred CCCCC---CCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc-CCcceeeeecccCccccccccC
Confidence 66554 45667665432 234567888999998875444 33567777766544 22222211111 123556
Q ss_pred cCCEEEEEeccCCCCCcEEEEEeC
Q 006375 229 RGNHFFITRRSDELFNSELLACPV 252 (648)
Q Consensus 229 dg~~l~~~~~~~~~~~~~l~~~~~ 252 (648)
|.. ++|++..+ ...++.+.+
T Consensus 824 Ds~-~lfltGKG---D~~v~~yEv 843 (1012)
T KOG1445|consen 824 DSN-VLFLTGKG---DRFVNMYEV 843 (1012)
T ss_pred CCc-eEEEecCC---CceEEEEEe
Confidence 665 55666652 235555554
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.023 Score=59.83 Aligned_cols=164 Identities=19% Similarity=0.174 Sum_probs=93.3
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHC-C--CEEEEEccCC-CCCCChhhhhcccccCCCCcHhHHHHHHHHHHH--c
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDR-G--FIFAIAQIRG-GGELGRQWYENGKFLKKKNTFTDFIACAEYLIK--N 479 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G--~~v~~~~~rG-~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~--~ 479 (648)
.|+++..||++-......|...++..+.. | .-|..+|++. .|| .+-....+-++...++.+. .
T Consensus 176 spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG-----------~nI~h~ae~~vSf~r~kvlei~ 244 (784)
T KOG3253|consen 176 SPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGG-----------ANIKHAAEYSVSFDRYKVLEIT 244 (784)
T ss_pred CceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCCC-----------cchHHHHHHHHHHhhhhhhhhh
Confidence 58999999987322233344444433332 3 4455666652 222 1111122334444443222 2
Q ss_pred CCCCCCeEEEEeeChhHHHHHHHHhhCCCc-eeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCc
Q 006375 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDL-FKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSP 558 (648)
Q Consensus 480 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~-~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp 558 (648)
+..--..|.++|+|||..++..+...+-|. +.|+||..=.+|-..- + -|.+ |+.
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdg------p--------rgir-DE~---------- 299 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDG------P--------RGIR-DEA---------- 299 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCc------c--------cCCc-chh----------
Confidence 333447899999999987776666555443 5566665422221110 0 0221 111
Q ss_pred cccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccC
Q 006375 559 VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 615 (648)
Q Consensus 559 ~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~ 615 (648)
+-..+.| +|++.|.+|.+|++..-+++.+++++ +++++++. +++|..
T Consensus 300 ---Lldmk~P-VLFV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~---~adhsm 346 (784)
T KOG3253|consen 300 ---LLDMKQP-VLFVIGSNDHMCSPNSMEEVREKMQA---EVELHVIG---GADHSM 346 (784)
T ss_pred ---hHhcCCc-eEEEecCCcccCCHHHHHHHHHHhhc---cceEEEec---CCCccc
Confidence 1123456 99999999999999999999988886 45667775 889944
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.075 Score=55.96 Aligned_cols=199 Identities=11% Similarity=0.039 Sum_probs=101.5
Q ss_pred EEEeeEEeCC-CCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC-------ccceeEEecCC--eEEEEEeCCCCCC
Q 006375 81 YSVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-------VTASVEWAGNE--ALVYITMDEILRP 150 (648)
Q Consensus 81 ~~~~~~~~SP-DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-------~~~~~~WspDg--~l~y~~~~~~~~~ 150 (648)
..+..+.|.| |-.+||...+. | +.+||-+...+......+... ....+.|.|=- -|+...+ .
T Consensus 628 t~vtDl~WdPFD~~rLAVa~dd-g--~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy-----d 699 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDD-G--QINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY-----D 699 (1012)
T ss_pred ceeeecccCCCChHHeeecccC-c--eEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc-----c
Confidence 4667888888 77788887663 3 344554444433322111111 12336666543 2222222 2
Q ss_pred ceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc-----cceeee
Q 006375 151 DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-----VGVDTA 225 (648)
Q Consensus 151 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~-----~~~~~~ 225 (648)
..|.++|+.+. ++..-+..+... .++++|||||+.++-...+ ..|+++....++ +.+..+. .+....
T Consensus 700 ~Ti~lWDl~~~--~~~~~l~gHtdq-If~~AWSpdGr~~AtVcKD---g~~rVy~Prs~e--~pv~Eg~gpvgtRgARi~ 771 (1012)
T KOG1445|consen 700 STIELWDLANA--KLYSRLVGHTDQ-IFGIAWSPDGRRIATVCKD---GTLRVYEPRSRE--QPVYEGKGPVGTRGARIL 771 (1012)
T ss_pred ceeeeeehhhh--hhhheeccCcCc-eeEEEECCCCcceeeeecC---ceEEEeCCCCCC--CccccCCCCccCcceeEE
Confidence 34667788776 334444444333 3489999999998754332 456777666654 3333221 234456
Q ss_pred EeecCCEEEEEeccCCCCCcEEEEEeCCCCCcce---eEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 226 ASHRGNHFFITRRSDELFNSELLACPVDNTSETT---VLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 226 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
|.=||+.++.+.-. .....+|..++..+..... ..+.......+..++.+.+-+++. -.|...++.|.+-
T Consensus 772 wacdgr~viv~Gfd-k~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lflt--GKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 772 WACDGRIVIVVGFD-KSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLT--GKGDRFVNMYEVI 844 (1012)
T ss_pred EEecCcEEEEeccc-ccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEe--cCCCceEEEEEec
Confidence 88888877666543 3334456666654322111 122222222333444444433333 3345566666553
|
|
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0056 Score=56.02 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=74.4
Q ss_pred EEEEecCCCCCCC--CCCCchhHHHHHHCCCEEEEEccCCCC-CCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 408 LLLYGYGSYEICN--DPAFNSSRLSLLDRGFIFAIAQIRGGG-ELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 408 ~vl~~hGg~~~~~--~~~~~~~~~~l~~~G~~v~~~~~rG~g-~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
.||++ ||-+... .+.-......+.+.+|..+.+-.|-+- |||.. .-+.+.+|+..++++++..+..
T Consensus 38 ~vvfi-GGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~--------slk~D~edl~~l~~Hi~~~~fS-- 106 (299)
T KOG4840|consen 38 KVVFI-GGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTF--------SLKDDVEDLKCLLEHIQLCGFS-- 106 (299)
T ss_pred EEEEE-cccCCCccccccHHHHHHHHhhccceeeeeeccccccccccc--------cccccHHHHHHHHHHhhccCcc--
Confidence 34444 5444433 232334456777889999999988654 35432 2235679999999999877653
Q ss_pred CeEEEEeeChhHHHHHHHHhhC--CCceeEEEecCCccccc
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFVDVL 523 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~--p~~~~a~v~~~~~~d~~ 523 (648)
..|.++|||-|+-=++.++++. |..++|+|+++|+.|.-
T Consensus 107 t~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 107 TDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred cceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 5999999999999777777543 55788999999999854
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.71 Score=43.44 Aligned_cols=176 Identities=13% Similarity=0.110 Sum_probs=102.3
Q ss_pred EEEEEEEECCCCCeeec--cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEe
Q 006375 106 IYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQA 182 (648)
Q Consensus 106 ~~~l~v~dl~~g~~~~~--~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (648)
..+|++|...||.=... ..+.....++-+||+ .|+. ....+|.++|+.+........|+..... ...+.+
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAa------a~~qhvRlyD~~S~np~Pv~t~e~h~kN-VtaVgF 91 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAA------AGNQHVRLYDLNSNNPNPVATFEGHTKN-VTAVGF 91 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhh------ccCCeeEEEEccCCCCCceeEEeccCCc-eEEEEE
Confidence 46899999999974321 223334558899999 6643 2345689999998865566667655333 335677
Q ss_pred CCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeE
Q 006375 183 SESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVL 261 (648)
Q Consensus 183 s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 261 (648)
.-||||++- .++.+. +.++|+.... .+++......+ ...+-|+-..| |+.+. +++|.+.|+....-...+
T Consensus 92 ~~dgrWMyT-gseDgt--~kIWdlR~~~-~qR~~~~~spVn~vvlhpnQteL-is~dq----sg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 92 QCDGRWMYT-GSEDGT--VKIWDLRSLS-CQRNYQHNSPVNTVVLHPNQTEL-ISGDQ----SGNIRVWDLGENSCTHEL 162 (311)
T ss_pred eecCeEEEe-cCCCce--EEEEeccCcc-cchhccCCCCcceEEecCCcceE-EeecC----CCcEEEEEccCCcccccc
Confidence 889999863 333333 4455665554 33333222222 22344444444 44443 246777888652233337
Q ss_pred ecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 262 IPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
+|+.+ ..++++....|+-.+...+ .....+++++-.
T Consensus 163 iPe~~-~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~ 198 (311)
T KOG0315|consen 163 IPEDD-TSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLN 198 (311)
T ss_pred CCCCC-cceeeEEEcCCCcEEEEec-CCccEEEEEccC
Confidence 77665 4577777766644333322 235678888764
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.011 Score=61.58 Aligned_cols=85 Identities=19% Similarity=0.139 Sum_probs=63.9
Q ss_pred CcEEEEecCCC-CCCCCCCCchhHHHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc----
Q 006375 406 DPLLLYGYGSY-EICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN---- 479 (648)
Q Consensus 406 ~P~vl~~hGg~-~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---- 479 (648)
.-+|+++|||. -.+...+.......|+.. |.-|+.+||.-..|- .-....+++.-|.-|++.+
T Consensus 396 ~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPEa-----------PFPRaleEv~fAYcW~inn~all 464 (880)
T KOG4388|consen 396 RSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPEA-----------PFPRALEEVFFAYCWAINNCALL 464 (880)
T ss_pred ceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCCC-----------CCCcHHHHHHHHHHHHhcCHHHh
Confidence 45899999964 344556677777777765 999999999866542 2235678999999999876
Q ss_pred CCCCCCeEEEEeeChhHHHHHHH
Q 006375 480 CYCTKEKLCIEGRSAGGLLIGAV 502 (648)
Q Consensus 480 ~~~d~~~i~i~G~S~GG~l~~~~ 502 (648)
|+ ..+||+++|.|+||.|..-+
T Consensus 465 G~-TgEriv~aGDSAGgNL~~~V 486 (880)
T KOG4388|consen 465 GS-TGERIVLAGDSAGGNLCFTV 486 (880)
T ss_pred Cc-ccceEEEeccCCCcceeehh
Confidence 44 46899999999999965433
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.79 Score=43.69 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=82.5
Q ss_pred EEeeEEeCCC-CCEEEEEEeCCCCeEEEEEEEECCCCCeee--cccc----CccceeEEecCC-eEEEEEeCCCCCCceE
Q 006375 82 SVGCFQVSPD-NKLVAYAEDTKGDEIYTVYVIDIETGTPVG--KPLV----GVTASVEWAGNE-ALVYITMDEILRPDKA 153 (648)
Q Consensus 82 ~~~~~~~SPD-G~~la~~~~~~G~e~~~l~v~dl~~g~~~~--~~~~----~~~~~~~WspDg-~l~y~~~~~~~~~~~l 153 (648)
++-.+.|+|- |..|| +. +..-.|+++++.++.... ..+. .....++|+|.| .|+-.++|.. . +
T Consensus 16 r~W~~awhp~~g~ilA-sc----g~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t---~-~ 86 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILA-SC----GTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT---V-V 86 (312)
T ss_pred cEEEEEeccCCceEEE-ee----cCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce---E-E
Confidence 5667899998 87554 32 224578999987544321 1221 124569999999 7766666542 1 1
Q ss_pred EEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCcee---Eeeeccccee-eeEeec
Q 006375 154 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR---VLTPRVVGVD-TAASHR 229 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~---~l~~~~~~~~-~~~s~d 229 (648)
...+- .+.-+-...++.++ .-.=.++||++|++|+-.+. ...+|++..+...++. .|.+...++- ..|-|-
T Consensus 87 Iw~k~-~~efecv~~lEGHE-nEVK~Vaws~sG~~LATCSR---DKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 87 IWKKE-DGEFECVATLEGHE-NEVKCVAWSASGNYLATCSR---DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred EeecC-CCceeEEeeeeccc-cceeEEEEcCCCCEEEEeeC---CCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 12222 22112222333332 22235789999999975433 3457777666443233 3444443333 336554
Q ss_pred CCEEEEEeccCCCCCcEEEEEe
Q 006375 230 GNHFFITRRSDELFNSELLACP 251 (648)
Q Consensus 230 g~~l~~~~~~~~~~~~~l~~~~ 251 (648)
.+ |+|....++ ..++|+-+
T Consensus 162 ~d-lL~S~SYDn--TIk~~~~~ 180 (312)
T KOG0645|consen 162 ED-LLFSCSYDN--TIKVYRDE 180 (312)
T ss_pred cc-eeEEeccCC--eEEEEeec
Confidence 44 666666532 24666654
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.083 Score=50.20 Aligned_cols=179 Identities=16% Similarity=0.096 Sum_probs=99.6
Q ss_pred EEEEecCCCCCCCCCC--CchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 408 LLLYGYGSYEICNDPA--FNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 408 ~vl~~hGg~~~~~~~~--~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.||++-||......|. |......|+++||+|++.-|.-+-.. +..+ ...++.+..|++.|...+..++.
T Consensus 18 gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH---~~~A------~~~~~~f~~~~~~L~~~~~~~~~ 88 (250)
T PF07082_consen 18 GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDH---QAIA------REVWERFERCLRALQKRGGLDPA 88 (250)
T ss_pred EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcH---HHHH------HHHHHHHHHHHHHHHHhcCCCcc
Confidence 6888888755444443 44455688899999999988643221 1111 12346778888888877544443
Q ss_pred --eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcc---c-ccccCCCCCHHHHHHHHcCCcc
Q 006375 486 --KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTA---E-WEEWGDPWKEEFYFYMKSYSPV 559 (648)
Q Consensus 486 --~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~---~-~~~~g~~~~~~~~~~~~~~sp~ 559 (648)
.+.-+|||+|+-+-+.+....+..-++-|+.+ +-| .-.++.+|+... . -.|| .|.-.+....+++.-
T Consensus 89 ~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS-FNN---~~a~~aIP~~~~l~~~l~~EF-~PsP~ET~~li~~~Y-- 161 (250)
T PF07082_consen 89 YLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS-FNN---FPADEAIPLLEQLAPALRLEF-TPSPEETRRLIRESY-- 161 (250)
T ss_pred cCCeeeeecccchHHHHHHhhhccCcccceEEEe-cCC---hHHHhhCchHhhhccccccCc-cCCHHHHHHHHHHhc--
Confidence 67789999999987776655433223333332 111 112234443210 0 0122 233333333333311
Q ss_pred ccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCcc
Q 006375 560 DNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHF 614 (648)
Q Consensus 560 ~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~ 614 (648)
..|..|++-=.+|. ..|+..+.+.|+....+ ++....- .+.|.
T Consensus 162 ------~~~rnLLIkF~~D~---iDqt~~L~~~L~~r~~~--~~~~~~L-~G~HL 204 (250)
T PF07082_consen 162 ------QVRRNLLIKFNDDD---IDQTDELEQILQQRFPD--MVSIQTL-PGNHL 204 (250)
T ss_pred ------CCccceEEEecCCC---ccchHHHHHHHhhhccc--cceEEeC-CCCCC
Confidence 22346777777776 36899999999875322 2333222 46673
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.6 Score=47.81 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=85.5
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc-cCccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
.-.+..+.||-||..||+..- +| .+++|+..++....... .+....+-|..+| +|+-...+ ....+++
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~-~G----~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD-----~ttilwd 304 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSE-DG----EARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVD-----GTTILWD 304 (524)
T ss_pred cCCcceEEecCCCCeEEEeec-Cc----EEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCC-----ccEEEEe
Confidence 356789999999999998764 34 78888887766543321 2334459999999 77654332 2355667
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEeecCCEEEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFIT 236 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~ 236 (648)
.-++ +....|+.... -.+++.|-.+.++.. +..+..-.+|.++-+.+ ...+......+. ..|.|.|..|+-.
T Consensus 305 ~~~g--~~~q~f~~~s~-~~lDVdW~~~~~F~t--s~td~~i~V~kv~~~~P--~~t~~GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 305 AHTG--TVKQQFEFHSA-PALDVDWQSNDEFAT--SSTDGCIHVCKVGEDRP--VKTFIGHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred ccCc--eEEEeeeeccC-CccceEEecCceEee--cCCCceEEEEEecCCCc--ceeeecccCceEEEEECCCCceEEEe
Confidence 6555 23444444322 134566766665442 33333344555554444 333444333332 4588888755444
Q ss_pred eccCCCCCcEEEEE
Q 006375 237 RRSDELFNSELLAC 250 (648)
Q Consensus 237 ~~~~~~~~~~l~~~ 250 (648)
+++ ...+|+-.
T Consensus 378 SdD---~TlkiWs~ 388 (524)
T KOG0273|consen 378 SDD---GTLKIWSM 388 (524)
T ss_pred cCC---CeeEeeec
Confidence 443 23456553
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0046 Score=63.35 Aligned_cols=111 Identities=22% Similarity=0.248 Sum_probs=72.0
Q ss_pred EEEEecCCCCCCCCCCCchh-HHHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCC-cHhHHHHHHHHHHHc---CC
Q 006375 408 LLLYGYGSYEICNDPAFNSS-RLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKN-TFTDFIACAEYLIKN---CY 481 (648)
Q Consensus 408 ~vl~~hGg~~~~~~~~~~~~-~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~---~~ 481 (648)
++|++|||...+..++.... ...|+.. ..+|+.+|||-|. +|-= +-.+..+...| .+-|..=|++|+.++ -.
T Consensus 137 VlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~-FGFL-~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~aFG 214 (601)
T KOG4389|consen 137 VLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGA-FGFL-YLPGHPEAPGNMGLLDQQLALQWVQENIAAFG 214 (601)
T ss_pred EEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeecc-ceEE-ecCCCCCCCCccchHHHHHHHHHHHHhHHHhC
Confidence 88999997544444443322 2344444 5889999999543 2211 11122222222 567889999999887 33
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCC---ceeEEEecCCccc
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAVPFVD 521 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~---~~~a~v~~~~~~d 521 (648)
-||+||.++|.|+|+.-+.+-+. .|. +|+-+|+++|-++
T Consensus 215 Gnp~~vTLFGESAGaASv~aHLl-sP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 215 GNPSRVTLFGESAGAASVVAHLL-SPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CCcceEEEeccccchhhhhheec-CCCchhhHHHHHhhcCCCC
Confidence 69999999999999975544443 243 7999999988654
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.07 Score=56.89 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=70.3
Q ss_pred CCCceEEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCc-cceeEEecCC-eE
Q 006375 62 APPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE-AL 139 (648)
Q Consensus 62 ~~~~~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~-~~~~~WspDg-~l 139 (648)
..++++++|+|+... ++++.+..-++|-|++|+||.....|+++..|..+....|....+.+... ...++|.+|+ .+
T Consensus 106 ~~e~~~~ld~~~~~d-d~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~~e~~~~v~~~~~~~~~~~~~~~g~ 184 (712)
T KOG2237|consen 106 EKEEEVFLDPNALGD-DGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEGKELFTVVIDVKFSGPVWTHDGKGV 184 (712)
T ss_pred hcccceecCCccCCC-CceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCCCccceeeeeeccCCceeeccCCce
Confidence 357789999999987 68899999999999999999999999999999999888887776555554 5679999999 88
Q ss_pred EEEEeC
Q 006375 140 VYITMD 145 (648)
Q Consensus 140 ~y~~~~ 145 (648)
+|.+..
T Consensus 185 ~y~~w~ 190 (712)
T KOG2237|consen 185 SYLAWA 190 (712)
T ss_pred Eeeeec
Confidence 887653
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.2 Score=47.10 Aligned_cols=195 Identities=13% Similarity=0.113 Sum_probs=105.1
Q ss_pred eEEeCCC-CCEEEEEEeC----CCCeEEEEEEEECCCCC-eeec---cccCccceeEEecCC-eEEEEEeCCCCCCceEE
Q 006375 85 CFQVSPD-NKLVAYAEDT----KGDEIYTVYVIDIETGT-PVGK---PLVGVTASVEWAGNE-ALVYITMDEILRPDKAW 154 (648)
Q Consensus 85 ~~~~SPD-G~~la~~~~~----~G~e~~~l~v~dl~~g~-~~~~---~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~ 154 (648)
+.++||= ..+||.+... .| ..+|+|.++..++ .... ...+....++|++.- .++++...+ ..|.
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G--~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD----GSLr 86 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAG--NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGD----GSLR 86 (311)
T ss_pred eeEecccccchhheeehhhccccc--CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecC----ceEE
Confidence 4577772 3344544221 23 3589999996433 3321 122223459999987 777766532 2366
Q ss_pred EEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceee--eEeecCCE
Q 006375 155 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT--AASHRGNH 232 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~--~~s~dg~~ 232 (648)
++++..+ +....++.|+.. -..++.|.+-.++++++++-.++-.||..+.... ++..... ....| .|+|.-..
T Consensus 87 l~d~~~~-s~Pi~~~kEH~~-EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S--v~Tf~gh-~~~Iy~a~~sp~~~n 161 (311)
T KOG0277|consen 87 LFDLTMP-SKPIHKFKEHKR-EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS--VQTFNGH-NSCIYQAAFSPHIPN 161 (311)
T ss_pred EeccCCC-CcchhHHHhhhh-heEEeccccccceeEEeeccCCceEeecCCCCcc--eEeecCC-ccEEEEEecCCCCCC
Confidence 6665544 456667766543 3447788988888888775555566665554332 3333222 22223 38886655
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEe--CCEEEEEEecCCeeEEEEEEcC
Q 006375 233 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
++..+..+ ..+-..|++.+++.. .++... ..+....|. ++.+++....+. -++.+++.
T Consensus 162 lfas~Sgd----~~l~lwdvr~~gk~~-~i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~--~vr~wDir 221 (311)
T KOG0277|consen 162 LFASASGD----GTLRLWDVRSPGKFM-SIEAHN-SEILCCDWSKYNHNVLATGGVDN--LVRGWDIR 221 (311)
T ss_pred eEEEccCC----ceEEEEEecCCCcee-EEEecc-ceeEeecccccCCcEEEecCCCc--eEEEEehh
Confidence 55444332 345555666555443 343222 234444444 455665555444 45666665
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=96.40 E-value=2 Score=51.28 Aligned_cols=154 Identities=12% Similarity=0.138 Sum_probs=85.1
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc---c------------CccceeEEecCCeEEEEEeCCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---V------------GVTASVEWAGNEALVYITMDEIL 148 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~---~------------~~~~~~~WspDg~l~y~~~~~~~ 148 (648)
+++.+++++..| |..|..+ .+|+++|+.+........ . +.-.++++.+++..+|+...
T Consensus 571 ~gvavd~~~g~l-yVaDs~n---~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt--- 643 (1057)
T PLN02919 571 GKLAIDLLNNRL-FISDSNH---NRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT--- 643 (1057)
T ss_pred ceEEEECCCCeE-EEEECCC---CeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC---
Confidence 467888876655 4445433 588899987543321110 0 01245888888843455442
Q ss_pred CCceEEEEECCCCCCCcEEEEeec----------C------CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCce
Q 006375 149 RPDKAWLHKLEADQSNDICLYHEK----------D------DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL 212 (648)
Q Consensus 149 ~~~~l~~~~l~~~~~~~~~~~~~~----------~------~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~ 212 (648)
....|..+++.++ ....+... . -..-.++.++|++..|+++. .....|+++|..++. .
T Consensus 644 ~n~~Ir~id~~~~---~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad--~~~~~I~v~d~~~g~-v 717 (1057)
T PLN02919 644 ENHALREIDFVNE---TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM--AGQHQIWEYNISDGV-T 717 (1057)
T ss_pred CCceEEEEecCCC---EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE--CCCCeEEEEECCCCe-E
Confidence 2345777776554 12112110 0 00113568888766776643 345679999987765 3
Q ss_pred eEeeec-----ccc-----------eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 213 RVLTPR-----VVG-----------VDTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 213 ~~l~~~-----~~~-----------~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
..+... ..+ ....++|+|++||+.... +.+|.++|+++
T Consensus 718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~----n~~Irv~D~~t 771 (1057)
T PLN02919 718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE----SSSIRALDLKT 771 (1057)
T ss_pred EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC----CCeEEEEECCC
Confidence 322211 000 113488999988876442 35888888875
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.15 Score=52.49 Aligned_cols=143 Identities=10% Similarity=0.087 Sum_probs=86.2
Q ss_pred eEEeCCCCCEEEEEEeCCC----C--eEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 85 CFQVSPDNKLVAYAEDTKG----D--EIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G----~--e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
.+.|.+.|++|++...+.- + ...+|+++++.......+ ...+....++|.|++ ++..... -.+..+..+
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g---~~pa~~s~~ 303 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISG---YMPASVSVF 303 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEec---ccccceeec
Confidence 5789999999999865421 1 136899999975443333 345556679999999 7766552 223446666
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccceee-eEeecCCEEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGVDT-AASHRGNHFF 234 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~ 234 (648)
++.+. +.+-.+...- -...+||.++||++..-......+-++|..+. ...+.. ...+..+ .|||||..++
T Consensus 304 ~lr~N-----l~~~~Pe~~r-NT~~fsp~~r~il~agF~nl~gni~i~~~~~r--f~~~~~~~~~n~s~~~wspd~qF~~ 375 (561)
T COG5354 304 DLRGN-----LRFYFPEQKR-NTIFFSPHERYILFAGFDNLQGNIEIFDPAGR--FKVAGAFNGLNTSYCDWSPDGQFYD 375 (561)
T ss_pred ccccc-----eEEecCCccc-ccccccCcccEEEEecCCccccceEEeccCCc--eEEEEEeecCCceEeeccCCceEEE
Confidence 76654 2222211111 12347999999998654444556667777664 343422 2233344 5999998555
Q ss_pred EEec
Q 006375 235 ITRR 238 (648)
Q Consensus 235 ~~~~ 238 (648)
..+.
T Consensus 376 ~~~t 379 (561)
T COG5354 376 TDTT 379 (561)
T ss_pred ecCC
Confidence 4443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.031 Score=56.88 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=49.8
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
-.+..+.||++|+.+.-+.- ...|.+||++||+.+.. ....+...+.+.||+ .+|+.+.- ..+|..+|+
T Consensus 259 k~Vrd~~~s~~g~~fLS~sf-----D~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~s----d~ki~~wDi 329 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSASF-----DRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGS----DKKIRQWDI 329 (503)
T ss_pred hhhhhhhccccCCeeeeeec-----ceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecC----CCcEEEEec
Confidence 35678899999998764432 34799999999997753 333445568899999 77776542 334666666
Q ss_pred CCC
Q 006375 159 EAD 161 (648)
Q Consensus 159 ~~~ 161 (648)
.++
T Consensus 330 Rs~ 332 (503)
T KOG0282|consen 330 RSG 332 (503)
T ss_pred cch
Confidence 665
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.057 Score=58.30 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=74.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+....+-|+..|+| .|+...++++||+-+|..+..-. .+....+++||+| +|+- . .....|.++|+
T Consensus 537 DV~cv~FHPNs~Y~a-----TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS-g----~ed~~I~iWDl 606 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVA-----TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS-G----DEDGLIKIWDL 606 (707)
T ss_pred ccceEEECCcccccc-----cCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee-c----ccCCcEEEEEc
Confidence 455688999999887 34556799999999998765321 1224569999999 6643 2 33445888999
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCC
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP 209 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~ 209 (648)
+++ .....+.++ .....++.+|.||..|+.. +.++.|.++|+...
T Consensus 607 ~~~--~~v~~l~~H-t~ti~SlsFS~dg~vLasg---g~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 607 ANG--SLVKQLKGH-TGTIYSLSFSRDGNVLASG---GADNSVRLWDLTKV 651 (707)
T ss_pred CCC--cchhhhhcc-cCceeEEEEecCCCEEEec---CCCCeEEEEEchhh
Confidence 886 233333233 3344578899999877643 34566777787653
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.013 Score=56.68 Aligned_cols=97 Identities=12% Similarity=0.036 Sum_probs=58.2
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHH-HHHHHHcCCCCCC
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC-AEYLIKNCYCTKE 485 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~ 485 (648)
+.|+++|++.|. ...|...+..+...++.|..+..+|.+.. .....+++++.+. ++.+..... .+
T Consensus 1 ~~lf~~p~~gG~--~~~y~~la~~l~~~~~~v~~i~~~~~~~~----------~~~~~si~~la~~y~~~I~~~~~--~g 66 (229)
T PF00975_consen 1 RPLFCFPPAGGS--ASSYRPLARALPDDVIGVYGIEYPGRGDD----------EPPPDSIEELASRYAEAIRARQP--EG 66 (229)
T ss_dssp -EEEEESSTTCS--GGGGHHHHHHHTTTEEEEEEECSTTSCTT----------SHEESSHHHHHHHHHHHHHHHTS--SS
T ss_pred CeEEEEcCCccC--HHHHHHHHHhCCCCeEEEEEEecCCCCCC----------CCCCCCHHHHHHHHHHHhhhhCC--CC
Confidence 368889987663 23466656655544588999998876511 1112445555533 333333322 13
Q ss_pred eEEEEeeChhHHHHHHHHhh---CCCceeEEEecC
Q 006375 486 KLCIEGRSAGGLLIGAVLNM---RPDLFKAAVAAV 517 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~---~p~~~~a~v~~~ 517 (648)
.+.++|+|+||.+|..+|.+ .-..+..+++..
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD 101 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVSRLILID 101 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence 89999999999999887765 222355555554
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.12 Score=51.89 Aligned_cols=159 Identities=15% Similarity=0.058 Sum_probs=83.5
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-c---ccCccceeEEecCC---eEEEEEeCCCCCCce
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P---LVGVTASVEWAGNE---ALVYITMDEILRPDK 152 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~---~~~~~~~~~WspDg---~l~y~~~~~~~~~~~ 152 (648)
.-.+..+.|||||+.||+.... ...||++++|..+.. + -+..+....|+.|+ .++..........-.
T Consensus 186 ~~eV~DL~FS~dgk~lasig~d------~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~ 259 (398)
T KOG0771|consen 186 HAEVKDLDFSPDGKFLASIGAD------SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVR 259 (398)
T ss_pred cCccccceeCCCCcEEEEecCC------ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCcee
Confidence 3567889999999999998532 578999999965432 1 12235567788776 332222211111111
Q ss_pred EEEEECCCCCCCcEEEEee-cCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc---eeeeEee
Q 006375 153 AWLHKLEADQSNDICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG---VDTAASH 228 (648)
Q Consensus 153 l~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~---~~~~~s~ 228 (648)
++...+-.+. .-...... ....-.....+|+||+++++.+.+ ..+-+++..+-+ ...+.++.-. ....|+|
T Consensus 260 ~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d---GsVai~~~~~lq-~~~~vk~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 260 LCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD---GSVAIYDAKSLQ-RLQYVKEAHLGFVTGLTFSP 334 (398)
T ss_pred EEEeeeeccc-cccchhhhhhccCcceeEEEcCCCcEEEEeccC---CcEEEEEeceee-eeEeehhhheeeeeeEEEcC
Confidence 2222221110 00011000 011123356889999999987763 456666665543 3333343222 1245888
Q ss_pred cCCEEEEEeccCCCCCcEEEEEeC
Q 006375 229 RGNHFFITRRSDELFNSELLACPV 252 (648)
Q Consensus 229 dg~~l~~~~~~~~~~~~~l~~~~~ 252 (648)
|.+.+.=++.. ....|..+.+
T Consensus 335 dsr~~~svSs~---~~~~v~~l~v 355 (398)
T KOG0771|consen 335 DSRYLASVSSD---NEAAVTKLAV 355 (398)
T ss_pred CcCcccccccC---CceeEEEEee
Confidence 88766544332 2234555554
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.86 Score=44.13 Aligned_cols=176 Identities=16% Similarity=0.160 Sum_probs=90.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC-CCeeec---cccCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGK---PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~-g~~~~~---~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
+++.+.|||.-..++...+.+| +|++|+++. |...+. ...+....++|+.|| .+|-...+ .++-.+
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~----tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D-----k~~k~w 99 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDG----TVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD-----KQAKLW 99 (347)
T ss_pred chheeEeccccCceEEecccCC----ceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC-----CceEEE
Confidence 5778899996555555555555 788888875 454432 344445569999999 55443332 347788
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFIT 236 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~ 236 (648)
+|.+++. ..+- -++...- ...|-+...+=.+...+ -+.-|..+|.....+...+ ...+..|..+---. ++.+
T Consensus 100 DL~S~Q~--~~v~-~Hd~pvk-t~~wv~~~~~~cl~TGS-WDKTlKfWD~R~~~pv~t~--~LPeRvYa~Dv~~p-m~vV 171 (347)
T KOG0647|consen 100 DLASGQV--SQVA-AHDAPVK-TCHWVPGMNYQCLVTGS-WDKTLKFWDTRSSNPVATL--QLPERVYAADVLYP-MAVV 171 (347)
T ss_pred EccCCCe--eeee-eccccee-EEEEecCCCcceeEecc-cccceeecccCCCCeeeee--eccceeeehhccCc-eeEE
Confidence 9988843 2232 2332221 34455544332222222 1245677777655411111 11222233222122 3333
Q ss_pred eccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC
Q 006375 237 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID 278 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (648)
... +..|.+++++.+..+...+...-...+..+..+.|
T Consensus 172 ata----~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d 209 (347)
T KOG0647|consen 172 ATA----ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQD 209 (347)
T ss_pred Eec----CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEec
Confidence 332 24688888865322211333344555666666654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.12 Score=51.91 Aligned_cols=182 Identities=12% Similarity=0.079 Sum_probs=92.5
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
..+++++||..||-. ++.-.++|++........... ..-...+.||||| .|++++.+ ...||-.+-+.
T Consensus 148 k~vaf~~~gs~latg-----g~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d----~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATG-----GTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD----SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeec-----cccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC----ceEEEEeccCc
Confidence 567899999998853 334578899854443332211 1113359999999 88887654 23455443331
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCC--cEEEEEEcccccc--EEEEEECCCCC---ceeEeeecccce-eeeEeecCCE
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESK--KFLFIASESKITR--FVFYLDVSKPE---ELRVLTPRVVGV-DTAASHRGNH 232 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg--~~l~~~~~~~~~~--~l~~~dl~~~~---~~~~l~~~~~~~-~~~~s~dg~~ 232 (648)
.-+ .+..+ +.+.. +-...++.|+ ..+.+.+...... .++.+.+..+. ..+....+...+ ...+|.||+.
T Consensus 219 ~~a-~~t~~-~k~~~-~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 219 ALA-RKTPF-SKDEM-FSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred hhh-hcCCc-ccchh-hhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 110 11111 11221 2234555554 2333333332222 22222222221 122233333333 3569999999
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEE
Q 006375 233 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVY 283 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (648)
+++-++. ..+.+++..+.+.. .++++.....+.++.+.++.-++.
T Consensus 296 ~AlGT~d-----GsVai~~~~~lq~~-~~vk~aH~~~VT~ltF~Pdsr~~~ 340 (398)
T KOG0771|consen 296 LALGTMD-----GSVAIYDAKSLQRL-QYVKEAHLGFVTGLTFSPDSRYLA 340 (398)
T ss_pred EEEeccC-----CcEEEEEeceeeee-EeehhhheeeeeeEEEcCCcCccc
Confidence 9888885 24666666542211 266655555566777766644333
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.095 Score=47.84 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=61.2
Q ss_pred CCCCcEEEEecCCCCCC-CCCC-------------CchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCC--CCcH
Q 006375 403 DGSDPLLLYGYGSYEIC-NDPA-------------FNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK--KNTF 466 (648)
Q Consensus 403 ~~~~P~vl~~hGg~~~~-~~~~-------------~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~--~~~~ 466 (648)
..+..++|++||..-.. ..+. --+.+..-...||-|++.|.- .-+.+++.-....+ ...+
T Consensus 98 t~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N----~~~kfye~k~np~kyirt~v 173 (297)
T KOG3967|consen 98 TNPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPN----RERKFYEKKRNPQKYIRTPV 173 (297)
T ss_pred cCccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCc----hhhhhhhcccCcchhccchH
Confidence 44556899999942111 1110 012223444569999998853 11234422111111 1356
Q ss_pred hHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCc
Q 006375 467 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL 509 (648)
Q Consensus 467 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~ 509 (648)
+-+..+..+++.. ..+..|+++.||+||++++.++.+.|+.
T Consensus 174 eh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~d 214 (297)
T KOG3967|consen 174 EHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPDD 214 (297)
T ss_pred HHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCCc
Confidence 6666666666653 4678999999999999999999999873
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.4 Score=42.71 Aligned_cols=205 Identities=15% Similarity=0.182 Sum_probs=103.9
Q ss_pred CceEEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccccCc--cceeEEecCCeEE
Q 006375 64 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGV--TASVEWAGNEALV 140 (648)
Q Consensus 64 ~~~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~~~~--~~~~~WspDg~l~ 140 (648)
.-++.++.-.++.-. -.++++.|.||.+.|+...+..+ .|+.++++ |+.+. ..+.+. .-++++..++.++
T Consensus 7 ~y~~~i~~~~l~g~~--~e~SGLTy~pd~~tLfaV~d~~~----~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~v 79 (248)
T PF06977_consen 7 DYRVVIEAKPLPGIL--DELSGLTYNPDTGTLFAVQDEPG----EIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYV 79 (248)
T ss_dssp T-EEEEEEEE-TT----S-EEEEEEETTTTEEEEEETTTT----EEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEE
T ss_pred CcEEEEeeeECCCcc--CCccccEEcCCCCeEEEEECCCC----EEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEE
Confidence 346667744443221 14889999999998888877655 68888975 55543 233332 3348888777554
Q ss_pred EEEeCCCCCCceEEEEECCCCCCC-cE---EEEe--ec--CCCeEEEEEeCCCCcEEEEEEccccccEEEEEEC--CCCC
Q 006375 141 YITMDEILRPDKAWLHKLEADQSN-DI---CLYH--EK--DDIYSLGLQASESKKFLFIASESKITRFVFYLDV--SKPE 210 (648)
Q Consensus 141 y~~~~~~~~~~~l~~~~l~~~~~~-~~---~~~~--~~--~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl--~~~~ 210 (648)
.+. .+..+|+.++++..... .. .-++ .. +..-+-+++|.+.++.+++. ..+....||-++. ....
T Consensus 80 l~~----Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 80 LSE----ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp EEE----TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS-
T ss_pred EEE----cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccc
Confidence 432 34567888888543211 11 1111 11 11224588999987777764 4445567888887 2222
Q ss_pred ceeEee--ecc-cc------eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcce-eEecC------CCCcccceEE
Q 006375 211 ELRVLT--PRV-VG------VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETT-VLIPH------RESVKLQDIQ 274 (648)
Q Consensus 211 ~~~~l~--~~~-~~------~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~------~~~~~~~~~~ 274 (648)
..... ... .. ....+.|..+.||+++... ..|..+|.++ .... .-+.. ..-.+.+++.
T Consensus 155 -~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es----~~l~~~d~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa 228 (248)
T PF06977_consen 155 -LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES----RLLLELDRQG-RVVSSLSLDRGFHGLSKDIPQPEGIA 228 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT----TEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEE
T ss_pred -eeeccccccccccceeccccceEEcCCCCeEEEEECCC----CeEEEECCCC-CEEEEEEeCCcccCcccccCCccEEE
Confidence 11111 000 00 1134678888899998862 4788888654 2222 12222 1123577888
Q ss_pred EeCCEEEEEEec
Q 006375 275 LFIDHLAVYERE 286 (648)
Q Consensus 275 ~~~~~l~~~~~~ 286 (648)
++.++-++..++
T Consensus 229 ~d~~G~LYIvsE 240 (248)
T PF06977_consen 229 FDPDGNLYIVSE 240 (248)
T ss_dssp E-TT--EEEEET
T ss_pred ECCCCCEEEEcC
Confidence 888765555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.61 Score=50.60 Aligned_cols=183 Identities=17% Similarity=0.198 Sum_probs=94.8
Q ss_pred EeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC--C
Q 006375 87 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA--D 161 (648)
Q Consensus 87 ~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~--~ 161 (648)
.+=|-+++|..... +| .|.|+|+++...+.... ++...+++-+||+ +++-.+.|. .-+.|-..+-. +
T Consensus 419 ~Fvpgd~~Iv~G~k-~G----el~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk---tVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 419 KFVPGDRYIVLGTK-NG----ELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK---TVKFWDFKLVVSVP 490 (888)
T ss_pred EecCCCceEEEecc-CC----ceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc---EEEEEeEEEEeccC
Confidence 45566666655433 23 68888888877654322 3444557778999 765444332 22233221111 1
Q ss_pred CCCcE-------EEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCEE
Q 006375 162 QSNDI-------CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHF 233 (648)
Q Consensus 162 ~~~~~-------~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~l 233 (648)
.++.+ .+.+-.+ -.+-+..||||++|++.--+ .+-.+|.+| +-+=..-|..+.- -....+|||++.+
T Consensus 491 gt~~k~lsl~~~rtLel~d--dvL~v~~Spdgk~LaVsLLd-nTVkVyflD--tlKFflsLYGHkLPV~smDIS~DSkli 565 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELED--DVLCVSVSPDGKLLAVSLLD-NTVKVYFLD--TLKFFLSLYGHKLPVLSMDISPDSKLI 565 (888)
T ss_pred cccceeeeeccceEEeccc--cEEEEEEcCCCcEEEEEecc-CeEEEEEec--ceeeeeeecccccceeEEeccCCcCeE
Confidence 11111 1111112 23457889999999986433 334566665 3220112333222 2234699999854
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC-CEEEEEEecCCe
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI-DHLAVYEREGGL 289 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 289 (648)
+ +... ..|.+++=+|... -.+-++.|+.. +..+.+.+ .++++...+++.
T Consensus 566 v-TgSA--DKnVKiWGLdFGD--CHKS~fAHdDS--vm~V~F~P~~~~FFt~gKD~k 615 (888)
T KOG0306|consen 566 V-TGSA--DKNVKIWGLDFGD--CHKSFFAHDDS--VMSVQFLPKTHLFFTCGKDGK 615 (888)
T ss_pred E-eccC--CCceEEeccccch--hhhhhhcccCc--eeEEEEcccceeEEEecCcce
Confidence 4 3332 2467777776643 12227777655 34444444 567777766653
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.9 Score=42.68 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=70.6
Q ss_pred eEEeCC-CCCEEEEEEeCCCCeEEEEEEEECCCCCeeec--cccC--ccceeEEecCCeEEEEEeCC-CCCCceEEEEEC
Q 006375 85 CFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVG--VTASVEWAGNEALVYITMDE-ILRPDKAWLHKL 158 (648)
Q Consensus 85 ~~~~SP-DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~--~~~~~~WspDg~l~y~~~~~-~~~~~~l~~~~l 158 (648)
++..+| ++..+||... -| .-+.++|..+|+.... ..++ .++..+|||||+++|++.++ ......|-.++.
T Consensus 9 ~~a~~p~~~~avafaRR-PG---~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARR-PG---TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ceeeCCCCCeEEEEEeC-CC---cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 577899 5666666654 45 3678999999987642 2233 36779999999666776544 223344556776
Q ss_pred CCCCCCcEEEEeecCCCe-EEEEEeCCCCcEEEEEEcc---c------------cccEEEEEECCCCC
Q 006375 159 EADQSNDICLYHEKDDIY-SLGLQASESKKFLFIASES---K------------ITRFVFYLDVSKPE 210 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~-~~~~~~s~Dg~~l~~~~~~---~------------~~~~l~~~dl~~~~ 210 (648)
... -..+-+-..... --.+.+.|||+.|++.-.- . -...|-++|..+++
T Consensus 85 ~~~---~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ 149 (305)
T PF07433_consen 85 ARG---YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA 149 (305)
T ss_pred cCC---cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc
Confidence 522 122222211111 1135789999988874211 0 02357778888776
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.61 Score=47.42 Aligned_cols=197 Identities=12% Similarity=0.127 Sum_probs=111.9
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-----ecc-c---cCccceeEEecCC-eEEEEEeCCCCCCceEE
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-----GKP-L---VGVTASVEWAGNE-ALVYITMDEILRPDKAW 154 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-----~~~-~---~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~ 154 (648)
++.||+.-.--.. ++++..+|.+||+...... +.. + ..+...++|.+-. .+|-... ....|.
T Consensus 182 glsWn~~~~g~Ll----s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~----dd~~L~ 253 (422)
T KOG0264|consen 182 GLSWNRQQEGTLL----SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG----DDGKLM 253 (422)
T ss_pred ccccccccceeEe----eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec----CCCeEE
Confidence 3566664332222 2344568999998754331 111 1 2234558899887 5544332 234688
Q ss_pred EEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeecccc-eeeeEeecCCE
Q 006375 155 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVG-VDTAASHRGNH 232 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~~-~~~~~s~dg~~ 232 (648)
++|+.+++.+......... .-...+++.|-+.+|+.+.+ .++.|.++|+..-. .+..+....+. ....|||+.+.
T Consensus 254 iwD~R~~~~~~~~~~~ah~-~~vn~~~fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~et 330 (422)
T KOG0264|consen 254 IWDTRSNTSKPSHSVKAHS-AEVNCVAFNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNET 330 (422)
T ss_pred EEEcCCCCCCCcccccccC-CceeEEEeCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCc
Confidence 8998864222222222222 22335678898888876544 34678889988765 22223333332 34569999998
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCcce-----------eEecCCCC-cccceEEEeCC--EEEEEEecCCeeEEEEEEcC
Q 006375 233 FFITRRSDELFNSELLACPVDNTSETT-----------VLIPHRES-VKLQDIQLFID--HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~~ 298 (648)
++.++..+ .+|.+.|+..-++.+ .++.|..+ ..+.+|+|.++ +++....+++. +.||.+.
T Consensus 331 vLASSg~D----~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~--LqIW~~s 404 (422)
T KOG0264|consen 331 VLASSGTD----RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI--LQIWQMA 404 (422)
T ss_pred eeEecccC----CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCce--EEEeecc
Confidence 87776542 478888875432221 14444433 35777888775 66667766654 5555554
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=2.3 Score=45.69 Aligned_cols=153 Identities=8% Similarity=0.065 Sum_probs=93.0
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc----cCccceeEEecCCeEEEEEeCCCCCCceEEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL----VGVTASVEWAGNEALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~----~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~ 157 (648)
.+..+++|.+.+.||.+.. .| .|-+|++..+--....+ .....+++|++.++||=... ...|..+|
T Consensus 27 ~I~slA~s~kS~~lAvsRt-~g----~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~-----sg~i~EwD 96 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRT-DG----NIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGL-----SGSITEWD 96 (691)
T ss_pred ceEEEEEeccCCceeeecc-CC----cEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecC-----CceEEEEe
Confidence 3567889999999998764 34 67788887754332222 22344699995558865433 34588888
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeecccce--eeeEeecCCEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGV--DTAASHRGNHFF 234 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~~~--~~~~s~dg~~l~ 234 (648)
+-+. +.+...+.. ..-..+.+..|-+..+.+.+.++ .++.++...++ +...+..++.+. ...|.++|..|+
T Consensus 97 l~~l--k~~~~~d~~-gg~IWsiai~p~~~~l~IgcddG---vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 97 LHTL--KQKYNIDSN-GGAIWSIAINPENTILAIGCDDG---VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred cccC--ceeEEecCC-CcceeEEEeCCccceEEeecCCc---eEEEEecCCceEEEEeecccccceEEEEEecCCccEEE
Confidence 8876 333333322 23334667788888888765543 67777766655 333444444332 345888887765
Q ss_pred EEeccCCCCCcEEEEEeCCCC
Q 006375 235 ITRRSDELFNSELLACPVDNT 255 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~ 255 (648)
.-+- .+.|...|+..+
T Consensus 171 ~Gs~-----Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 171 GGSI-----DGVIRIWDVKSG 186 (691)
T ss_pred eccc-----CceEEEEEcCCC
Confidence 4333 356777777653
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.025 Score=56.32 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=64.8
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCC--EEEEEccCCCC-CCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGF--IFAIAQIRGGG-ELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 482 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~--~v~~~~~rG~g-~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 482 (648)
.-++|++|| |+.+....-...++...+.|+ +.+++-.+-.| -+|..+- ++.-..+-.++...+++|.+....
T Consensus 116 k~vlvFvHG-fNntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~D----reS~~~Sr~aLe~~lr~La~~~~~ 190 (377)
T COG4782 116 KTVLVFVHG-FNNTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYD----RESTNYSRPALERLLRYLATDKPV 190 (377)
T ss_pred CeEEEEEcc-cCCchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccc----hhhhhhhHHHHHHHHHHHHhCCCC
Confidence 358999999 444333222222343334443 33333333222 1111110 111224668899999999987643
Q ss_pred CCCeEEEEeeChhHHHHHHHHhh----C----CCceeEEEecCCcccc
Q 006375 483 TKEKLCIEGRSAGGLLIGAVLNM----R----PDLFKAAVAAVPFVDV 522 (648)
Q Consensus 483 d~~~i~i~G~S~GG~l~~~~~~~----~----p~~~~a~v~~~~~~d~ 522 (648)
.+|.|++||||.++++.++.| . +..|+-+|+.+|=.|.
T Consensus 191 --~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 191 --KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred --ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 799999999999998876654 2 2257778888886664
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.35 Score=46.77 Aligned_cols=193 Identities=13% Similarity=0.228 Sum_probs=103.8
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC------------CC-----eeeccc-cCc--cceeEEecCCeEEEEE
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET------------GT-----PVGKPL-VGV--TASVEWAGNEALVYIT 143 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~------------g~-----~~~~~~-~~~--~~~~~WspDg~l~y~~ 143 (648)
...++||||.++|- |+....|.++|++- |. ++..++ +.+ ...+.|.|-..|+.+.
T Consensus 116 R~aafs~DG~lvAT-----GsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 116 RAAAFSPDGSLVAT-----GSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred eeeeeCCCCcEEEc-----cCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 45689999999883 55567899999861 11 111111 111 3458899988777765
Q ss_pred eCCCCCCceEEEEECCCCCC-CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cc--
Q 006375 144 MDEILRPDKAWLHKLEADQS-NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RV-- 219 (648)
Q Consensus 144 ~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~-- 219 (648)
.++ .-|-+.++..... +.-.+|++..+ ...+++.|.|.+|++.... .-+.++|+.+-+ ...+ +.
T Consensus 191 srD----~tvKlFDfsK~saKrA~K~~qd~~~--vrsiSfHPsGefllvgTdH---p~~rlYdv~T~Q---cfvsanPd~ 258 (430)
T KOG0640|consen 191 SRD----NTVKLFDFSKTSAKRAFKVFQDTEP--VRSISFHPSGEFLLVGTDH---PTLRLYDVNTYQ---CFVSANPDD 258 (430)
T ss_pred cCC----CeEEEEecccHHHHHHHHHhhccce--eeeEeecCCCceEEEecCC---CceeEEecccee---EeeecCccc
Confidence 432 3366666654322 22234444322 3356789999999986443 335666776643 2221 11
Q ss_pred ---cce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEE
Q 006375 220 ---VGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTY 295 (648)
Q Consensus 220 ---~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~ 295 (648)
+.+ ....|+.|+ ||++...++ .|-..|--...-.+.+-....+..+.+..+.+++.++... +-.+-+.+|
T Consensus 259 qht~ai~~V~Ys~t~~-lYvTaSkDG----~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS-G~DS~vkLW 332 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGS-LYVTASKDG----AIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS-GKDSTVKLW 332 (430)
T ss_pred ccccceeEEEecCCcc-EEEEeccCC----cEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec-CCcceeeee
Confidence 111 233666665 777776643 3444442210101101112334457777787776655543 223456677
Q ss_pred EcCC
Q 006375 296 RLPA 299 (648)
Q Consensus 296 ~~~~ 299 (648)
.+.+
T Consensus 333 Ei~t 336 (430)
T KOG0640|consen 333 EIST 336 (430)
T ss_pred eecC
Confidence 7764
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.3 Score=45.43 Aligned_cols=196 Identities=14% Similarity=0.124 Sum_probs=100.3
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCcc-ceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVT-ASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~-~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
-.+.+++|+.+|.||+-.. . ..++.+||..+|+..+. ++.... -.+.|-.+..++-...+ ..++.+.+
T Consensus 277 gPI~slKWnk~G~yilS~~-v----D~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td-----~~i~V~kv 346 (524)
T KOG0273|consen 277 GPIFSLKWNKKGTYILSGG-V----DGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTD-----GCIHVCKV 346 (524)
T ss_pred CceEEEEEcCCCCEEEecc-C----CccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCC-----ceEEEEEe
Confidence 3567889999999987442 2 23778999999987653 333322 34889766666543321 22556666
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCE-----
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNH----- 232 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~----- 232 (648)
+.+. +...+..++. -...+.|.|-|..|+ ++++.++-.||-..-... ...+..... -....|||+|.-
T Consensus 347 ~~~~--P~~t~~GH~g-~V~alk~n~tg~LLa-S~SdD~TlkiWs~~~~~~--~~~l~~Hskei~t~~wsp~g~v~~n~~ 420 (524)
T KOG0273|consen 347 GEDR--PVKTFIGHHG-EVNALKWNPTGSLLA-SCSDDGTLKIWSMGQSNS--VHDLQAHSKEIYTIKWSPTGPVTSNPN 420 (524)
T ss_pred cCCC--cceeeecccC-ceEEEEECCCCceEE-EecCCCeeEeeecCCCcc--hhhhhhhccceeeEeecCCCCccCCCc
Confidence 6542 3333444433 234678999997654 445555556664432221 222222211 123458887652
Q ss_pred --EEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 233 --FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 233 --l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
+.+.+- ..+.-|...|+..+.....+..+++.+.-..+++++.+++. ...++ .+.+++..
T Consensus 421 ~~~~l~sa---s~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs-Gs~dg--~V~iws~~ 482 (524)
T KOG0273|consen 421 MNLMLASA---SFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS-GSLDG--CVHIWSTK 482 (524)
T ss_pred CCceEEEe---ecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe-cCCCC--eeEecccc
Confidence 111111 11234555666553333324456665444344444444432 22233 45555555
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.2 Score=51.28 Aligned_cols=150 Identities=12% Similarity=0.127 Sum_probs=86.9
Q ss_pred EEEeeEEeCC-CCCEEEEEEeCCCCeEEEEEEEECCC-CCeeeccccC---ccceeEEecCC-eEEEEEeCCCCCCceEE
Q 006375 81 YSVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAW 154 (648)
Q Consensus 81 ~~~~~~~~SP-DG~~la~~~~~~G~e~~~l~v~dl~~-g~~~~~~~~~---~~~~~~WspDg-~l~y~~~~~~~~~~~l~ 154 (648)
-.++.++|.| .|.+|+ +... ...|+||++-+ ++.+. +.-+ ....+.|+++| .|+-.++|. -|.
T Consensus 215 kgvsai~~fp~~~hLlL-S~gm----D~~vklW~vy~~~~~lr-tf~gH~k~Vrd~~~s~~g~~fLS~sfD~-----~lK 283 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLL-SGGM----DGLVKLWNVYDDRRCLR-TFKGHRKPVRDASFNNCGTSFLSASFDR-----FLK 283 (503)
T ss_pred cccchhhhccceeeEEE-ecCC----CceEEEEEEecCcceeh-hhhcchhhhhhhhccccCCeeeeeecce-----eee
Confidence 3567889999 565554 3222 34889999876 44433 3322 24569999999 887666643 367
Q ss_pred EEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc--eeeeEeecCCE
Q 006375 155 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG--VDTAASHRGNH 232 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~--~~~~~s~dg~~ 232 (648)
++|+.|++ -..-|....... -+.+.||+..+++... ...+|..+|+.+++ +..-..+..+ ....+-++|++
T Consensus 284 lwDtETG~--~~~~f~~~~~~~--cvkf~pd~~n~fl~G~--sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 284 LWDTETGQ--VLSRFHLDKVPT--CVKFHPDNQNIFLVGG--SDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred eeccccce--EEEEEecCCCce--eeecCCCCCcEEEEec--CCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCce
Confidence 78888883 333343332222 3467888877766433 34678999999887 3222222212 12346677776
Q ss_pred EEEEeccCCCCCcEEEEEe
Q 006375 233 FFITRRSDELFNSELLACP 251 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~ 251 (648)
++-+++. ...+++-..
T Consensus 357 FissSDd---ks~riWe~~ 372 (503)
T KOG0282|consen 357 FISSSDD---KSVRIWENR 372 (503)
T ss_pred EeeeccC---ccEEEEEcC
Confidence 5554443 234554433
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.059 Score=53.01 Aligned_cols=170 Identities=14% Similarity=0.139 Sum_probs=102.8
Q ss_pred EEEecccccC----CCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC-ccceeEEecCCeEEE
Q 006375 67 LILDENVKAE----GRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNEALVY 141 (648)
Q Consensus 67 ~lld~n~~~~----~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-~~~~~~WspDg~l~y 141 (648)
-++|++-..+ .-|+-.+..++++|-..-|.-+... ...|.++|+.++.++...+-. ....++|+| ..+-|
T Consensus 170 ~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s----DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF 244 (433)
T KOG0268|consen 170 DIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS----DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNF 244 (433)
T ss_pred eecccccCCccceeecCCCceeEEecCCCcchheeeecc----CCceEEEecccCCccceeeeeccccceecCc-cccce
Confidence 3577643321 1245567788889987766655422 236899999999888643332 245699999 53334
Q ss_pred EEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEe--eecc
Q 006375 142 ITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL--TPRV 219 (648)
Q Consensus 142 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l--~~~~ 219 (648)
+.. ++.+.+|.+|+.-- .....++... ..-.+++.+||-|+-++-.+- +..|.++....+. -+.+ +.+.
T Consensus 245 ~~a---~ED~nlY~~DmR~l-~~p~~v~~dh-vsAV~dVdfsptG~Efvsgsy---DksIRIf~~~~~~-SRdiYhtkRM 315 (433)
T KOG0268|consen 245 VAA---NEDHNLYTYDMRNL-SRPLNVHKDH-VSAVMDVDFSPTGQEFVSGSY---DKSIRIFPVNHGH-SRDIYHTKRM 315 (433)
T ss_pred eec---cccccceehhhhhh-cccchhhccc-ceeEEEeccCCCcchhccccc---cceEEEeecCCCc-chhhhhHhhh
Confidence 443 45667999887654 2334444433 234568899999998874332 3456677666654 3333 2343
Q ss_pred ccee-eeEeecCCEEEEEeccCCCCCcEEEEEeCC
Q 006375 220 VGVD-TAASHRGNHFFITRRSDELFNSELLACPVD 253 (648)
Q Consensus 220 ~~~~-~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~ 253 (648)
..+. .-||.|.++++--++ ..|.+|++....
T Consensus 316 q~V~~Vk~S~Dskyi~SGSd---d~nvRlWka~As 347 (433)
T KOG0268|consen 316 QHVFCVKYSMDSKYIISGSD---DGNVRLWKAKAS 347 (433)
T ss_pred heeeEEEEeccccEEEecCC---Ccceeeeecchh
Confidence 3333 349999885543333 367888887654
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.37 Score=48.68 Aligned_cols=135 Identities=14% Similarity=0.117 Sum_probs=81.3
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCC-CchhHHHHHHCCCEEEEEccCCCC-CCChhh-
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQIRGGG-ELGRQW- 453 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~~rG~g-~~g~~~- 453 (648)
+.+++.. ++.++.+. +.|... ..+.-+||++||-......+. .......|.+.||..+.+....-- ..-...
T Consensus 63 e~~~L~~-~~~~flaL-~~~~~~---~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~ 137 (310)
T PF12048_consen 63 EVQWLQA-GEERFLAL-WRPANS---AKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRA 137 (310)
T ss_pred hcEEeec-CCEEEEEE-EecccC---CCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccC
Confidence 3444543 55556554 555443 344568999999544333222 233456888899999998876510 000000
Q ss_pred ------hhcccc---------------------cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC
Q 006375 454 ------YENGKF---------------------LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR 506 (648)
Q Consensus 454 ------~~~~~~---------------------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 506 (648)
..++.. ......+.-+.+++.++..++. .+|+++|++.|+++++.++...
T Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~la~~ 214 (310)
T PF12048_consen 138 TEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARYLAEK 214 (310)
T ss_pred CCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHHHhcC
Confidence 000000 0011334566677778777764 5699999999999999999887
Q ss_pred CC-ceeEEEecCCc
Q 006375 507 PD-LFKAAVAAVPF 519 (648)
Q Consensus 507 p~-~~~a~v~~~~~ 519 (648)
+. .+.+.|+..+.
T Consensus 215 ~~~~~daLV~I~a~ 228 (310)
T PF12048_consen 215 PPPMPDALVLINAY 228 (310)
T ss_pred CCcccCeEEEEeCC
Confidence 64 46788887764
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.078 Score=56.53 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=70.5
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC---ccceeEEecCC-eEEEEEeCCCCCCceEEE
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~WspDg-~l~y~~~~~~~~~~~l~~ 155 (648)
.+.+.....||+|+.||=+...+--+...|++++..+=.... .+.+ ....++||||| .|+-++.| |...||-
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-~L~~HsLTVT~l~FSpdg~~LLsvsRD---Rt~sl~~ 600 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-ELEGHSLTVTRLAFSPDGRYLLSVSRD---RTVSLYE 600 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh-eecccceEEEEEEECCCCcEEEEeecC---ceEEeee
Confidence 378889999999999998876666778899999976533322 2222 13569999999 66554443 3344444
Q ss_pred EECCCCCCCcEEEE--eecCCCeEEEEEeCCCCcEEEEEEccccccEEEE
Q 006375 156 HKLEADQSNDICLY--HEKDDIYSLGLQASESKKFLFIASESKITRFVFY 203 (648)
Q Consensus 156 ~~l~~~~~~~~~~~--~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 203 (648)
. ..+. .+..-| .....+...+..|+||++++ ++++++-.-.+|.
T Consensus 601 ~--~~~~-~~e~~fa~~k~HtRIIWdcsW~pde~~F-aTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 601 V--QEDI-KDEFRFACLKAHTRIIWDCSWSPDEKYF-ATASRDKKVKVWE 646 (764)
T ss_pred e--eccc-chhhhhccccccceEEEEcccCccccee-EEecCCceEEEEe
Confidence 3 2211 111112 22234566688999999984 3444432233443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.25 Score=50.69 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=83.5
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec--cccC-ccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVG-VTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~-~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
-.+.-+.+||.-|.+.-+....| .+.+||+.+..+.-. .... ...+++|+|-+ .|+.+- +...+|+.+
T Consensus 165 qsvRll~ys~skr~lL~~asd~G----~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV----G~Dkki~~y 236 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKG----AVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV----GYDKKINIY 236 (673)
T ss_pred CeEEEeecccccceeeEeeccCC----eEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe----cccceEEEe
Confidence 34567889999999998887777 788899987665421 1111 24569999999 665442 445679999
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
|+++....+.+.++.+ +..++++++|.+|++... ..+|+.+|+...+
T Consensus 237 D~~s~~s~~~l~y~~P----lstvaf~~~G~~L~aG~s---~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 237 DIRSQASTDRLTYSHP----LSTVAFSECGTYLCAGNS---KGELIAYDMRSTK 283 (673)
T ss_pred ecccccccceeeecCC----cceeeecCCceEEEeecC---CceEEEEecccCC
Confidence 9998877777777654 235788999988876433 3689999998765
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.75 Score=45.72 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=80.3
Q ss_pred EEEEEECCCCCeeec--cc-cCccceeEEecC--C-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEE
Q 006375 108 TVYVIDIETGTPVGK--PL-VGVTASVEWAGN--E-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQ 181 (648)
Q Consensus 108 ~l~v~dl~~g~~~~~--~~-~~~~~~~~WspD--g-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 181 (648)
.|||+|+.+.+.+.. +. ++..+-.+.||. + +++|-.. ....+|+++++.+- +.......++... .-++
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s---~t~GdV~l~d~~nl--~~v~~I~aH~~~l-Aala 180 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS---TTSGDVVLFDTINL--QPVNTINAHKGPL-AALA 180 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC---CCCceEEEEEcccc--eeeeEEEecCCce-eEEE
Confidence 599999999987742 22 344444566654 4 7877543 34677999988765 3344444444333 3568
Q ss_pred eCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc---eeeeEeecCCEEEEEeccCCCCCcEEEEEeC
Q 006375 182 ASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG---VDTAASHRGNHFFITRRSDELFNSELLACPV 252 (648)
Q Consensus 182 ~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~---~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 252 (648)
+++||..|+-.+. + ..-|.++...+++.+..+..+..- ....|++|+..|..+++. ...+|++++.
T Consensus 181 fs~~G~llATASe-K-GTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T---eTVHiFKL~~ 249 (391)
T KOG2110|consen 181 FSPDGTLLATASE-K-GTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT---ETVHIFKLEK 249 (391)
T ss_pred ECCCCCEEEEecc-C-ceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC---CeEEEEEecc
Confidence 9999998874333 2 345666677766512222111111 123489999977777765 3467777654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.87 Score=45.76 Aligned_cols=153 Identities=10% Similarity=0.040 Sum_probs=78.0
Q ss_pred EEEeeEEeCCCCCEEEEEEe-----CC-CCeEEEEEEEECCCCCeeeccc-cCccceeEEecCC-eEEEEEeCCCCCCce
Q 006375 81 YSVGCFQVSPDNKLVAYAED-----TK-GDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDK 152 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~-----~~-G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~ 152 (648)
.+....++.|||++.+=+.. .. ..+.-.||.+|..++..+.... -.+..+++||||+ .+|++ . ....+
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~a-D---T~~~~ 186 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVA-D---TPANR 186 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEE-e---CCCCe
Confidence 44456688899986443333 11 1223368888875544443221 1234569999999 66554 3 22356
Q ss_pred EEEEECCC--CC-CCcE-EEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEee-eccc-ceeeeE
Q 006375 153 AWLHKLEA--DQ-SNDI-CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-PRVV-GVDTAA 226 (648)
Q Consensus 153 l~~~~l~~--~~-~~~~-~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~-~~~~-~~~~~~ 226 (648)
+++++++. +. .... .++....+..--+.....||..-+ +.......|-+++.++.. ...+. +... ..-.+-
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~--~a~~~g~~v~~~~pdG~l-~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV--AAVWGGGRVVRFNPDGKL-LGEIKLPVKRPTNPAFG 263 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE--ecccCCceEEEECCCCcE-EEEEECCCCCCccceEe
Confidence 88887752 11 1111 222111222222445556664322 233334578888877332 22222 2111 112345
Q ss_pred eecCCEEEEEeccC
Q 006375 227 SHRGNHFFITRRSD 240 (648)
Q Consensus 227 s~dg~~l~~~~~~~ 240 (648)
.++.+.||+++...
T Consensus 264 G~~~~~L~iTs~~~ 277 (307)
T COG3386 264 GPDLNTLYITSARS 277 (307)
T ss_pred CCCcCEEEEEecCC
Confidence 67789999998874
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.042 Score=56.75 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=41.1
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec--cccCccceeEEecCC-eEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVY 141 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~WspDg-~l~y 141 (648)
..+..+.+||||++||..+. +| -|+|+|.++.+.+-. ...+-...++||||| .|+-
T Consensus 291 g~in~f~FS~DG~~LA~VSq-DG----fLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQ-DG----FLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred ccccceeEcCCCceEEEEec-Cc----eEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe
Confidence 37788999999999998865 34 789999988776531 223334458999999 6644
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.033 Score=36.60 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCcEEEEEEccc--cccEEEE
Q 006375 176 YSLGLQASESKKFLFIASESK--ITRFVFY 203 (648)
Q Consensus 176 ~~~~~~~s~Dg~~l~~~~~~~--~~~~l~~ 203 (648)
....+.|||||++|+|.+... +..+||+
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 445789999999999999887 7788885
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.18 Score=51.81 Aligned_cols=131 Identities=21% Similarity=0.238 Sum_probs=82.0
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc---ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP---LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~---~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
..+.+|||.| |+|+.-.+| +|.|||+.....+.+. .++ .+.+.-++|| .|+-...| .-|..+|+.
T Consensus 513 yALa~spDak-vcFsccsdG----nI~vwDLhnq~~VrqfqGhtDG-ascIdis~dGtklWTGGlD-----ntvRcWDlr 581 (705)
T KOG0639|consen 513 YALAISPDAK-VCFSCCSDG----NIAVWDLHNQTLVRQFQGHTDG-ASCIDISKDGTKLWTGGLD-----NTVRCWDLR 581 (705)
T ss_pred hhhhcCCccc-eeeeeccCC----cEEEEEcccceeeecccCCCCC-ceeEEecCCCceeecCCCc-----cceeehhhh
Confidence 4578899997 688877777 7999999877655431 222 3458889999 77654333 336677777
Q ss_pred CCCCCcEEEEeecC-CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEE
Q 006375 160 ADQSNDICLYHEKD-DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFF 234 (648)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~ 234 (648)
++. ... +.+ ..-.+++...|.+.|+++... ++.++++...+.+ .-.|...+.- ....|++-|+|++
T Consensus 582 egr--qlq---qhdF~SQIfSLg~cP~~dWlavGMe---ns~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 582 EGR--QLQ---QHDFSSQIFSLGYCPTGDWLAVGME---NSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred hhh--hhh---hhhhhhhheecccCCCccceeeecc---cCcEEEEecCCcc-ceeecccccEEEEEEecccCceee
Confidence 652 111 112 122346678999999998654 3568888877665 2233322221 1234888898643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=2.1 Score=39.61 Aligned_cols=68 Identities=9% Similarity=0.156 Sum_probs=41.0
Q ss_pred EEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceee-eEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 179 GLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT-AASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 179 ~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
.+...|.||.|+ ....++.-.++|+.++..++...+....+.. .+||...++ ++-. ...+|-+.|+.+
T Consensus 236 av~vdpsgrll~---sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yl--lt~s---yd~~ikltdlqg 304 (350)
T KOG0641|consen 236 AVAVDPSGRLLA---SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYL--LTCS---YDMKIKLTDLQG 304 (350)
T ss_pred EEEECCCcceee---eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEE--EEec---ccceEEEeeccc
Confidence 456778887665 2233455667788887645566666555543 488855433 3322 224788888875
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.073 Score=56.33 Aligned_cols=134 Identities=10% Similarity=0.089 Sum_probs=73.7
Q ss_pred CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchh---------------------HHHHHHCCCEEEEEcc
Q 006375 385 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSS---------------------RLSLLDRGFIFAIAQI 443 (648)
Q Consensus 385 ~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~---------------------~~~l~~~G~~v~~~~~ 443 (648)
.+..+-.|++.... .....|+|+++-||+|.+....+-.+ -..|.+ -..++.+|.
T Consensus 50 ~~~~lf~~f~es~~---~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~-~anllfiDq 125 (437)
T PLN02209 50 ENVQFFYYFIKSDK---NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK-TANIIFLDQ 125 (437)
T ss_pred CCeEEEEEEEecCC---CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh-cCcEEEecC
Confidence 35556666554332 23457999999999887643311100 013333 356888887
Q ss_pred CCCCCCChhhhhcccccCCCCcHhHHHHHHHHHH-HcCCCCCCeEEEEeeChhHHHH----HHHHhhC-----C-CceeE
Q 006375 444 RGGGELGRQWYENGKFLKKKNTFTDFIACAEYLI-KNCYCTKEKLCIEGRSAGGLLI----GAVLNMR-----P-DLFKA 512 (648)
Q Consensus 444 rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~-~~~~~d~~~i~i~G~S~GG~l~----~~~~~~~-----p-~~~~a 512 (648)
+-+.|+...-..... .......+|+...++... ....-....+.|+|.|+||.-+ ..+..+. + =-+++
T Consensus 126 PvGtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~G 204 (437)
T PLN02209 126 PVGSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQG 204 (437)
T ss_pred CCCCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeee
Confidence 766665422111111 111123355555555333 3333344679999999999843 3333222 1 14789
Q ss_pred EEecCCccccc
Q 006375 513 AVAAVPFVDVL 523 (648)
Q Consensus 513 ~v~~~~~~d~~ 523 (648)
+++..|++|..
T Consensus 205 i~igng~td~~ 215 (437)
T PLN02209 205 YVLGNPITHIE 215 (437)
T ss_pred EEecCcccChh
Confidence 99999988853
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.64 Score=45.02 Aligned_cols=118 Identities=12% Similarity=0.100 Sum_probs=73.9
Q ss_pred CcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-----ccCccceeEEecCCeEEEEEeCCCCCCceE
Q 006375 79 GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-----LVGVTASVEWAGNEALVYITMDEILRPDKA 153 (648)
Q Consensus 79 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-----~~~~~~~~~WspDg~l~y~~~~~~~~~~~l 153 (648)
+...+..+++-|.|.+|+...+ ...++++|++|-+-.... -.+....+.+|+.|.+|.+...+ .. |
T Consensus 215 d~~~vrsiSfHPsGefllvgTd-----Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD--G~--I 285 (430)
T KOG0640|consen 215 DTEPVRSISFHPSGEFLLVGTD-----HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD--GA--I 285 (430)
T ss_pred ccceeeeEeecCCCceEEEecC-----CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccC--Cc--E
Confidence 4567889999999999997544 678999999986643211 12234458889999887776533 22 3
Q ss_pred EEEECCCCCCCcEEEE-eecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 154 WLHKLEADQSNDICLY-HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
.+++=-++ .=...+ ..++..-..+..++++||||+ .++-++-++++.+.++.
T Consensus 286 klwDGVS~--rCv~t~~~AH~gsevcSa~Ftkn~kyiL---sSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 286 KLWDGVSN--RCVRTIGNAHGGSEVCSAVFTKNGKYIL---SSGKDSTVKLWEISTGR 338 (430)
T ss_pred EeeccccH--HHHHHHHhhcCCceeeeEEEccCCeEEe---ecCCcceeeeeeecCCc
Confidence 33331111 111111 123344456778999999997 33334667777777775
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.67 Score=50.87 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=38.6
Q ss_pred EEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEec
Q 006375 178 LGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRR 238 (648)
Q Consensus 178 ~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~ 238 (648)
.+..+|||||||+..+.+ +.|.++|+-++.-+.-+.-...-....+||.|+.|+-+.-
T Consensus 580 td~~FS~DgrWlisasmD---~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 580 TDMTFSPDGRWLISASMD---STIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred eeeEeCCCCcEEEEeecC---CcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEe
Confidence 367899999999976654 4588899988761222222222234568999997766554
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.32 E-value=3.4 Score=41.02 Aligned_cols=191 Identities=14% Similarity=0.050 Sum_probs=99.1
Q ss_pred CCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCc-cceeEEecCC-eEEEEEe-----CCC-
Q 006375 78 RGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGV-TASVEWAGNE-ALVYITM-----DEI- 147 (648)
Q Consensus 78 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~-~~~~~WspDg-~l~y~~~-----~~~- 147 (648)
.+....+.-.+||||++|.-+.+.-.+.+-.|-|+|++.+=.+... ..++ -..+.|.||| +|+...- ++.
T Consensus 48 ~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~G 127 (305)
T PF07433_consen 48 PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSG 127 (305)
T ss_pred CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccC
Confidence 4566777889999999987776655555779999999844333322 2333 3458899999 8866421 111
Q ss_pred --------CCCceEEEEECCCCCCCcEEEEeecCCCe-EEEEEeCCCCcEEEEEEcccc---c-cEEEEEECCCCCceeE
Q 006375 148 --------LRPDKAWLHKLEADQSNDICLYHEKDDIY-SLGLQASESKKFLFIASESKI---T-RFVFYLDVSKPEELRV 214 (648)
Q Consensus 148 --------~~~~~l~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~s~Dg~~l~~~~~~~~---~-~~l~~~dl~~~~~~~~ 214 (648)
.++. |.+++..++.--++..+...+... .--+++.+||.-++-.-.... . .=|.+.+... . ++.
T Consensus 128 R~kLNl~tM~ps-L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~-~~~ 204 (305)
T PF07433_consen 128 RAKLNLDTMQPS-LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-A-LRL 204 (305)
T ss_pred ceecChhhcCCc-eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-c-cee
Confidence 1122 444555554211221121111111 123577888854433222211 1 2233333322 1 333
Q ss_pred eeec------ccc--eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE
Q 006375 215 LTPR------VVG--VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH 279 (648)
Q Consensus 215 l~~~------~~~--~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (648)
+... ..+ ....++.+|+.+++++.+. ..+.+.|..+. + ++....-....++...++.
T Consensus 205 ~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG----g~~~~~d~~tg---~-~~~~~~l~D~cGva~~~~~ 269 (305)
T PF07433_consen 205 LPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG----GRVAVWDAATG---R-LLGSVPLPDACGVAPTDDG 269 (305)
T ss_pred ccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC----CEEEEEECCCC---C-EeeccccCceeeeeecCCc
Confidence 3211 111 1234778888888888773 35666777652 2 2222222235667776666
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.32 E-value=3 Score=40.47 Aligned_cols=116 Identities=12% Similarity=0.051 Sum_probs=67.0
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee---eccccCccceeEEecCCeEEEEEeCCCCCCceEEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV---GKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~---~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~ 157 (648)
-.+....|+|||..+|= +|. ...|++|++.+...- ..--.++...+.|++|+..+|+...+ ..|+.+|
T Consensus 48 geI~~~~F~P~gs~~aS----gG~-Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtD----k~v~~wD 118 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFAS----GGS-DRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTD----KTVRGWD 118 (338)
T ss_pred ceEEEEEECCCCCeEee----cCC-cceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCC----ceEEEEe
Confidence 45677899999998873 344 458999997654322 11112345669999999444444322 3588899
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
+.+++. ..-+.. +..+.-....+.-|..++.+.. .+..+.++|..+.+
T Consensus 119 ~~tG~~--~rk~k~-h~~~vNs~~p~rrg~~lv~Sgs--dD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 119 AETGKR--IRKHKG-HTSFVNSLDPSRRGPQLVCSGS--DDGTLKLWDIRKKE 166 (338)
T ss_pred ccccee--eehhcc-ccceeeecCccccCCeEEEecC--CCceEEEEeecccc
Confidence 988732 222222 2334333333444555554333 34556667777554
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=95.27 E-value=6.2 Score=46.30 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=58.5
Q ss_pred EEEEEeCCCCcEEEEEEcc--cc-ccEEEEEECCCCCceeEeeeccccee--eeEeecCCEEEEEeccCCCCCcEEEEEe
Q 006375 177 SLGLQASESKKFLFIASES--KI-TRFVFYLDVSKPEELRVLTPRVVGVD--TAASHRGNHFFITRRSDELFNSELLACP 251 (648)
Q Consensus 177 ~~~~~~s~Dg~~l~~~~~~--~~-~~~l~~~dl~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 251 (648)
...++|-.||+|+++++-. .+ ...+.+++-+ |+ +.-......+.+ ..|-|.|..|+-.... ..+..|.-..
T Consensus 212 ~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~--~~~~~VvFfE 287 (928)
T PF04762_consen 212 RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRL--PDRHDVVFFE 287 (928)
T ss_pred ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEc--CCCcEEEEEe
Confidence 3468999999999998753 23 4667777766 33 444444334433 4699999977766653 2335566555
Q ss_pred CCCCCcceeEecC-CCCcccceEEEeCCE
Q 006375 252 VDNTSETTVLIPH-RESVKLQDIQLFIDH 279 (648)
Q Consensus 252 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 279 (648)
-++.......++. .....+..+.|..+.
T Consensus 288 rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds 316 (928)
T PF04762_consen 288 RNGLRHGEFTLRFDPEEEKVIELAWNSDS 316 (928)
T ss_pred cCCcEeeeEecCCCCCCceeeEEEECCCC
Confidence 4442222222332 234456778887764
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.75 Score=45.04 Aligned_cols=62 Identities=26% Similarity=0.453 Sum_probs=40.3
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECC---CCCee--ec--cc----cCccceeEEecCCeEEEEEeC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE---TGTPV--GK--PL----VGVTASVEWAGNEALVYITMD 145 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~---~g~~~--~~--~~----~~~~~~~~WspDg~l~y~~~~ 145 (648)
.+..+++||||.++|+.....+. .+|+|.-+. .|... .. .. ......++|++|++|++....
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~--~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGG--GRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCC--CeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCC
Confidence 78899999999999999977664 445555432 23111 11 11 112346999999987776653
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.044 Score=52.30 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=44.7
Q ss_pred cCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCC----CceeEEEecC
Q 006375 443 IRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP----DLFKAAVAAV 517 (648)
Q Consensus 443 ~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p----~~~~a~v~~~ 517 (648)
+||.-.....|.+....... ........|++|+...-.-.++.|.+.|||.||.+|.+++...+ +++..+....
T Consensus 43 FRGTd~t~~~W~ed~~~~~~-~~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fD 120 (224)
T PF11187_consen 43 FRGTDDTLVDWKEDFNMSFQ-DETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFD 120 (224)
T ss_pred EECCCCchhhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEee
Confidence 36665445566654333221 12234456777776542223457999999999999998888743 2455555443
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.31 Score=47.39 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=38.3
Q ss_pred CCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccC
Q 006375 566 NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 615 (648)
Q Consensus 566 ~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~ 615 (648)
.+| -|.+.+.+|..|+..+.+++++..++.|.++....+. ++.|..
T Consensus 178 ~~p-~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~---~S~HV~ 223 (240)
T PF05705_consen 178 RCP-RLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFE---DSPHVA 223 (240)
T ss_pred CCC-eEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCC---CCchhh
Confidence 566 8999999999999999999999999998887666665 556643
|
|
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.11 Score=53.86 Aligned_cols=112 Identities=19% Similarity=0.157 Sum_probs=76.0
Q ss_pred CCcEEEEecC-CCCCCCCC-CC-chhHHHHHHC-CCEEEEEccCCCCCCChhhhhccc------ccCCCCcHhHHHHHHH
Q 006375 405 SDPLLLYGYG-SYEICNDP-AF-NSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGK------FLKKKNTFTDFIACAE 474 (648)
Q Consensus 405 ~~P~vl~~hG-g~~~~~~~-~~-~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~------~~~~~~~~~D~~~~~~ 474 (648)
..|+.|++-| |+.. ..+ .. ...+..||.+ |..|+....| -||+.+.-... ...-...+.|+...|+
T Consensus 85 ~gPiFLmIGGEgp~~-~~wv~~~~~~~~~~AkkfgA~v~~lEHR---FYG~S~P~~~~st~nlk~LSs~QALaDla~fI~ 160 (514)
T KOG2182|consen 85 GGPIFLMIGGEGPES-DKWVGNENLTWLQWAKKFGATVFQLEHR---FYGQSSPIGDLSTSNLKYLSSLQALADLAEFIK 160 (514)
T ss_pred CCceEEEEcCCCCCC-CCccccCcchHHHHHHHhCCeeEEeeee---ccccCCCCCCCcccchhhhhHHHHHHHHHHHHH
Confidence 3589999966 2222 112 11 2235566665 9999999999 45544321111 1112357788888888
Q ss_pred HHHHcC-CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 475 YLIKNC-YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 475 ~l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
.+-.+. .-++.+....|+|+-|.|++++=..+|+++.++|+.+..+
T Consensus 161 ~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 161 AMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred HHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 887664 5566799999999999999999999999988888776544
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.11 E-value=3.5 Score=39.95 Aligned_cols=131 Identities=9% Similarity=0.056 Sum_probs=74.3
Q ss_pred EEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCC--eEEEEEeCCCCCCceEEEEECCCCCC
Q 006375 86 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE--ALVYITMDEILRPDKAWLHKLEADQS 163 (648)
Q Consensus 86 ~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg--~l~y~~~~~~~~~~~l~~~~l~~~~~ 163 (648)
...-+||++=+.+.+..|. -.-...++.....++++|-. .++|.+.+. .-.+.++..+.+
T Consensus 41 af~~~dgs~g~a~~~eaGk-------------~v~~~~lpaR~Hgi~~~p~~~ravafARrPG----tf~~vfD~~~~~- 102 (366)
T COG3490 41 AFDARDGSFGAATLSEAGK-------------IVFATALPARGHGIAFHPALPRAVAFARRPG----TFAMVFDPNGAQ- 102 (366)
T ss_pred eeeccCCceeEEEEccCCc-------------eeeeeecccccCCeecCCCCcceEEEEecCC----ceEEEECCCCCc-
Confidence 3445666665555554441 11122334444458888886 777776542 224456666653
Q ss_pred CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccc--cEEEEEECCCCCceeEeee----cccceeeeEeecCCEEEEE
Q 006375 164 NDICLYHEKDDIYSLGLQASESKKFLFIASESKIT--RFVFYLDVSKPEELRVLTP----RVVGVDTAASHRGNHFFIT 236 (648)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~--~~l~~~dl~~~~~~~~l~~----~~~~~~~~~s~dg~~l~~~ 236 (648)
+..++....+..|+-.-.+|+||++|+.+-++.+. .-|=++|...+ ++.+-. ...-.+..|.+||+.+++.
T Consensus 103 ~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 103 EPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred CcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEe
Confidence 34444444444455445789999999877665433 45666776543 444321 2223456799999977654
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.2 Score=56.65 Aligned_cols=178 Identities=11% Similarity=0.128 Sum_probs=108.8
Q ss_pred CCCceEEEecccccCC----------CCcEEEeeEEeCCCCC-EEEEEEeCCCCeEEEEEEEECCCCCee-ec-c--ccC
Q 006375 62 APPEHLILDENVKAEG----------RGFYSVGCFQVSPDNK-LVAYAEDTKGDEIYTVYVIDIETGTPV-GK-P--LVG 126 (648)
Q Consensus 62 ~~~~~~lld~n~~~~~----------~~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~l~v~dl~~g~~~-~~-~--~~~ 126 (648)
++|..+|.|++.+..+ ..+-.+.++.|+|.+. .||= |+...+|+|||+..-+.- .- . ..+
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLAS-----Ga~~geI~iWDlnn~~tP~~~~~~~~~~ 162 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLAS-----GADDGEILIWDLNKPETPFTPGSQAPPS 162 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeec-----cCCCCcEEEeccCCcCCCCCCCCCCCcc
Confidence 3456788999886211 1245677799999987 6663 334568999999863321 10 1 112
Q ss_pred ccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCe-EEEEEeCCCCc-EEEEEEccccccEEEE
Q 006375 127 VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIY-SLGLQASESKK-FLFIASESKITRFVFY 203 (648)
Q Consensus 127 ~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~s~Dg~-~l~~~~~~~~~~~l~~ 203 (648)
-...++|...- .|+-.... .....++||... +..+-+.....+. ...+.|.||+. .|++.++++...-|-+
T Consensus 163 eI~~lsWNrkvqhILAS~s~----sg~~~iWDlr~~--~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql 236 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSHILASGSP----SGRAVIWDLRKK--KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL 236 (1049)
T ss_pred cceEeccchhhhHHhhccCC----CCCceeccccCC--CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence 23458887665 66544332 223556677654 3344444333322 44689999974 5655556666678888
Q ss_pred EECCCCC-ceeEeeeccccee-eeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 204 LDVSKPE-ELRVLTPRVVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 204 ~dl~~~~-~~~~l~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
+|+.-.. +.+.++.+..|+. ..|.+.+..+++.+..+ .+++..+.++
T Consensus 237 WDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD----~~ii~wN~~t 285 (1049)
T KOG0307|consen 237 WDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD----NRIICWNPNT 285 (1049)
T ss_pred ecccccCCchhhhcccccceeeeccCCCCchhhhcccCC----CCeeEecCCC
Confidence 8876554 3455555555543 56999888888887763 4677777765
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.05 E-value=2 Score=42.08 Aligned_cols=159 Identities=12% Similarity=0.080 Sum_probs=89.2
Q ss_pred CCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEEC-CCCCeee---c------cccCccceeEEecCC--eEEEEEeC
Q 006375 78 RGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDI-ETGTPVG---K------PLVGVTASVEWAGNE--ALVYITMD 145 (648)
Q Consensus 78 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl-~~g~~~~---~------~~~~~~~~~~WspDg--~l~y~~~~ 145 (648)
++.....++.|||||.+|.-.- +..|+|+|+ ..|..-+ . ...++.+.++++|-. .++..++
T Consensus 156 de~taAhsL~Fs~DGeqlfaGy------krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY- 228 (406)
T KOG2919|consen 156 DEYTAAHSLQFSPDGEQLFAGY------KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY- 228 (406)
T ss_pred HhhhhheeEEecCCCCeEeecc------cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecc-
Confidence 3456667899999999986432 457999998 4554321 1 123456778899865 4544443
Q ss_pred CCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeeccc----
Q 006375 146 EILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVV---- 220 (648)
Q Consensus 146 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~---- 220 (648)
.+...||..+=. ....+..+. ..-...+.|-+||..++. ..+-...|-.+|+.... .+..|.....
T Consensus 229 --~q~~giy~~~~~----~pl~llggh-~gGvThL~~~edGn~lfs--GaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQ 299 (406)
T KOG2919|consen 229 --GQRVGIYNDDGR----RPLQLLGGH-GGGVTHLQWCEDGNKLFS--GARKDDKILCWDIRYSRDPVYALERHVGDTNQ 299 (406)
T ss_pred --cceeeeEecCCC----Cceeeeccc-CCCeeeEEeccCcCeecc--cccCCCeEEEEeehhccchhhhhhhhccCccc
Confidence 222335543311 122222222 223346789999998874 33334677788886644 1112221111
Q ss_pred ceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCc
Q 006375 221 GVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSE 257 (648)
Q Consensus 221 ~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~ 257 (648)
.+.+..+|+|++|+-- ...+-|-+.|+++.+.
T Consensus 300 RI~FDld~~~~~LasG-----~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 300 RILFDLDPKGEILASG-----DTDGSVRVWDLKDLGN 331 (406)
T ss_pred eEEEecCCCCceeecc-----CCCccEEEEecCCCCC
Confidence 1334577888866422 2335677778877554
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.036 Score=53.81 Aligned_cols=85 Identities=18% Similarity=0.053 Sum_probs=53.4
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCe
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 486 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 486 (648)
|.|+++|++.|.. +.|.+....|... ..|+....+|-+... ....+++|+.++.-..+.+. -....
T Consensus 1 ~pLF~fhp~~G~~--~~~~~L~~~l~~~-~~v~~l~a~g~~~~~----------~~~~~l~~~a~~yv~~Ir~~-QP~GP 66 (257)
T COG3319 1 PPLFCFHPAGGSV--LAYAPLAAALGPL-LPVYGLQAPGYGAGE----------QPFASLDDMAAAYVAAIRRV-QPEGP 66 (257)
T ss_pred CCEEEEcCCCCcH--HHHHHHHHHhccC-ceeeccccCcccccc----------cccCCHHHHHHHHHHHHHHh-CCCCC
Confidence 5789999966542 3355555555544 888888888765322 22244556555443333221 11257
Q ss_pred EEEEeeChhHHHHHHHHhh
Q 006375 487 LCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 487 i~i~G~S~GG~l~~~~~~~ 505 (648)
..+.|+|+||.++..+|.+
T Consensus 67 y~L~G~S~GG~vA~evA~q 85 (257)
T COG3319 67 YVLLGWSLGGAVAFEVAAQ 85 (257)
T ss_pred EEEEeeccccHHHHHHHHH
Confidence 9999999999999888776
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.13 Score=54.44 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=73.3
Q ss_pred CeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCC-------c--------------hhHHHHHHCCCEEEEEccC
Q 006375 386 GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF-------N--------------SSRLSLLDRGFIFAIAQIR 444 (648)
Q Consensus 386 g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~-------~--------------~~~~~l~~~G~~v~~~~~r 444 (648)
+..+..|++...+ .....|+||++-||+|.+...++ . ..-..|.+ -..++.+|.+
T Consensus 49 ~~~lfy~f~es~~---~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~-~anllfiDqP 124 (433)
T PLN03016 49 NVQFFYYFIKSEN---NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTK-MANIIFLDQP 124 (433)
T ss_pred CeEEEEEEEecCC---CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhh-cCcEEEecCC
Confidence 4556666554332 23567999999999886542111 0 00123333 3678888977
Q ss_pred CCCCCChhhhhcccccCC-CCcHhHHHHHHH-HHHHcCCCCCCeEEEEeeChhHHHHHHHH----hhC------CCceeE
Q 006375 445 GGGELGRQWYENGKFLKK-KNTFTDFIACAE-YLIKNCYCTKEKLCIEGRSAGGLLIGAVL----NMR------PDLFKA 512 (648)
Q Consensus 445 G~g~~g~~~~~~~~~~~~-~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~----~~~------p~~~~a 512 (648)
-|.|+... ........ ....+|+...+. |+..........+.|+|.|+||..+-.++ ..+ +=-+++
T Consensus 125 vGtGfSy~--~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkG 202 (433)
T PLN03016 125 VGSGFSYS--KTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQG 202 (433)
T ss_pred CCCCccCC--CCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCccccee
Confidence 66555421 11111111 112245554444 33333333456799999999998443333 222 115789
Q ss_pred EEecCCccccc
Q 006375 513 AVAAVPFVDVL 523 (648)
Q Consensus 513 ~v~~~~~~d~~ 523 (648)
+++..|++|..
T Consensus 203 i~iGNg~t~~~ 213 (433)
T PLN03016 203 YMLGNPVTYMD 213 (433)
T ss_pred eEecCCCcCch
Confidence 99999988764
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.4 Score=41.55 Aligned_cols=189 Identities=16% Similarity=0.153 Sum_probs=106.3
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC---ccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~---~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
-+....+|-|.++|. .+|. .--|+|+|+...+..+..+.+ ....+.|.-.. .|+-...+ ..|.++|
T Consensus 102 ivk~~af~~ds~~ll----tgg~-ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd-----~tVRLWD 171 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLL----TGGQ-EKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD-----KTVRLWD 171 (334)
T ss_pred eeeeEEecccchhhh----ccch-HHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC-----CceEEEE
Confidence 345677788877765 2333 446889998876655444433 23458897666 77544332 2366677
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc--cce-eeeEeecCCEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV--VGV-DTAASHRGNHFF 234 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~--~~~-~~~~s~dg~~l~ 234 (648)
..++.. -..+.... + .-+..+|+||++|.+... +.|-.+|..+-. +|.... -.+ ..+++|+. .+|
T Consensus 172 ~rTgt~-v~sL~~~s-~--VtSlEvs~dG~ilTia~g----ssV~Fwdaksf~---~lKs~k~P~nV~SASL~P~k-~~f 239 (334)
T KOG0278|consen 172 HRTGTE-VQSLEFNS-P--VTSLEVSQDGRILTIAYG----SSVKFWDAKSFG---LLKSYKMPCNVESASLHPKK-EFF 239 (334)
T ss_pred eccCcE-EEEEecCC-C--CcceeeccCCCEEEEecC----ceeEEecccccc---ceeeccCccccccccccCCC-ceE
Confidence 777622 22222221 2 225678999999987543 346667766533 232221 122 23577876 354
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEc
Q 006375 235 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRL 297 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~ 297 (648)
+.-+ ..+.++++|-.++ ......-.+....+..+.+.+++ ++....++|.-+||....
T Consensus 240 VaGg----ed~~~~kfDy~Tg-eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 240 VAGG----EDFKVYKFDYNTG-EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred EecC----cceEEEEEeccCC-ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 4433 3489999998873 33223212222335566677765 455566777766666543
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.99 Score=50.62 Aligned_cols=100 Identities=16% Similarity=0.056 Sum_probs=62.7
Q ss_pred EEEeeEEeCCCCCEEEEEEeCC-C---CeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCCCCCCceEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTK-G---DEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~-G---~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~ 155 (648)
..++.+.++|+|+.++|..+.- . .....+|+.|..+ ............+.|+||| .+++... ......++|.
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~spdg~~~~~~~~-~~~~~~~l~l 89 (620)
T COG1506 13 ARVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VRLLTFGGGVSELRWSPDGSVLAFVST-DGGRVAQLYL 89 (620)
T ss_pred hcccCcccCCCCceeEEeeccccccccccccceEEEeccc--ccccccCCcccccccCCCCCEEEEEec-cCCCcceEEE
Confidence 4566789999999999998741 1 1235788877665 2222333335569999999 7777763 3444677888
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEE
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFI 191 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~ 191 (648)
...+ + ....... ......|+++|+.+++
T Consensus 90 ~~~~-g---~~~~~~~----~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 90 VDVG-G---LITKTAF----GVSDARWSPDGDRIAF 117 (620)
T ss_pred EecC-C---ceeeeec----ccccceeCCCCCeEEE
Confidence 8776 3 1111111 1123567888887777
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.75 E-value=2.7 Score=42.30 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=74.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-ec-----cccC---ccceeEEecCC-eEEEEEeCCCCCCc
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GK-----PLVG---VTASVEWAGNE-ALVYITMDEILRPD 151 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-~~-----~~~~---~~~~~~WspDg-~l~y~~~~~~~~~~ 151 (648)
.+-...|+|=...+.- +|+|..+|.||.+-.+... .. .+.+ ..+.++|.|-- -++.+. +..+
T Consensus 83 ~vLDi~w~PfnD~vIA----SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa----g~Dn 154 (472)
T KOG0303|consen 83 PVLDIDWCPFNDCVIA----SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA----GSDN 154 (472)
T ss_pred cccccccCccCCceee----cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc----cCCc
Confidence 3446678886554432 4788899999987543322 11 1222 24569999987 665543 3345
Q ss_pred eEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 152 KAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 152 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
.|..++++++ +..+-.. .+....+.+|+.||..++-++. +..|.++|..+++
T Consensus 155 ~v~iWnv~tg--eali~l~--hpd~i~S~sfn~dGs~l~Ttck---DKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 155 TVSIWNVGTG--EALITLD--HPDMVYSMSFNRDGSLLCTTCK---DKKVRVIDPRRGT 206 (472)
T ss_pred eEEEEeccCC--ceeeecC--CCCeEEEEEeccCCceeeeecc---cceeEEEcCCCCc
Confidence 6999999998 3333333 4566778899999998875443 3578899988876
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.69 E-value=5.4 Score=41.33 Aligned_cols=225 Identities=12% Similarity=0.062 Sum_probs=113.3
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
+.+..+-.||+++|. |++...|.|+|.++...+..- -........|+|++ +++.+..|+. .+..+++.
T Consensus 71 v~s~~fR~DG~Llaa-----GD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~----v~k~~d~s 141 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAA-----GDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK----VVKYWDLS 141 (487)
T ss_pred eeEEEeecCCeEEEc-----cCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCc----eEEEEEcC
Confidence 456678899999885 344458999996663333211 11113346789988 7776665432 24456666
Q ss_pred CCCCCcEEEEeecC-CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeecccceeeeEeecCCEEEEEe
Q 006375 160 ADQSNDICLYHEKD-DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVDTAASHRGNHFFITR 237 (648)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~~~~~~~s~dg~~l~~~~ 237 (648)
+.. . ..+..+ ..+.-..+|+|-..+|+++.+ .+..|.++|+.... ....+..+.+-...-+-|.|..|+ +.
T Consensus 142 ~a~---v-~~~l~~htDYVR~g~~~~~~~hivvtGs--YDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ia-sA 214 (487)
T KOG0310|consen 142 TAY---V-QAELSGHTDYVRCGDISPANDHIVVTGS--YDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIA-SA 214 (487)
T ss_pred CcE---E-EEEecCCcceeEeeccccCCCeEEEecC--CCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEE-Ec
Confidence 652 2 322222 234435678998888887543 33456666766543 122232222222222445565443 21
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecC
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFI 316 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~ 316 (648)
+++ .+-++|+-++++...... .....+..+....+ ..++...-++ ++.+++.. .-+. -+...+|
T Consensus 215 ---gGn--~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~--~VKVfd~t--~~Kv-----v~s~~~~ 279 (487)
T KOG0310|consen 215 ---GGN--SVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDR--HVKVFDTT--NYKV-----VHSWKYP 279 (487)
T ss_pred ---CCC--eEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeeccccc--ceEEEEcc--ceEE-----EEeeecc
Confidence 122 455567764332221111 12233555555443 3344443333 46666644 2222 1455677
Q ss_pred CCeeeeeCCCCcccccEEEEEEeeC
Q 006375 317 DPVYSIDPSESVFSSRILRFHYSSL 341 (648)
Q Consensus 317 ~~~~~v~~~~~~~~~~~l~~~~ss~ 341 (648)
.|..++ ..+++++.+.+.-++-
T Consensus 280 ~pvLsi---avs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 280 GPVLSI---AVSPDDQTVVIGMSNG 301 (487)
T ss_pred cceeeE---EecCCCceEEEecccc
Confidence 665443 3345666666555443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.91 Score=45.14 Aligned_cols=112 Identities=19% Similarity=0.244 Sum_probs=68.5
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec--cccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
+-.+++|+.+.+|||-.+..- .+|+++|+.+-++... .-.+....+++++||.++-+..+. ..-++.+.+.+
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~---GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeK---GTVIRVf~v~~ 205 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTS---GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEK---GTVIRVFSVPE 205 (391)
T ss_pred eEeeccCCCCceEEecCCCCC---ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccC---ceEEEEEEcCC
Confidence 556677888889999866542 4899999887665532 123335568999999554454422 23344555555
Q ss_pred CCCCcEEEEeecC---CCeEEEEEeCCCCcEEEEEEccccccEEEEEE
Q 006375 161 DQSNDICLYHEKD---DIYSLGLQASESKKFLFIASESKITRFVFYLD 205 (648)
Q Consensus 161 ~~~~~~~~~~~~~---~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 205 (648)
+ .++++--. +.-..+++++||+++|..+++.. +-+|+.++
T Consensus 206 G----~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te-TVHiFKL~ 248 (391)
T KOG2110|consen 206 G----QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE-TVHIFKLE 248 (391)
T ss_pred c----cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC-eEEEEEec
Confidence 4 23343222 22345789999999988765543 33444444
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.79 Score=43.33 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=61.7
Q ss_pred CCCCcEEEEecCCCCCCCCCCCchh-HHHHHHC-C--CEEEEEccCCCCCCChhhhhcccccC-CCCcHhHHHHHHHHHH
Q 006375 403 DGSDPLLLYGYGSYEICNDPAFNSS-RLSLLDR-G--FIFAIAQIRGGGELGRQWYENGKFLK-KKNTFTDFIACAEYLI 477 (648)
Q Consensus 403 ~~~~P~vl~~hGg~~~~~~~~~~~~-~~~l~~~-G--~~v~~~~~rG~g~~g~~~~~~~~~~~-~~~~~~D~~~~~~~l~ 477 (648)
....|.|+++-|.+|.. +|-.. ...|... + ..|..+---|+-.....-.+.....+ ..-+++|.+.---..+
T Consensus 26 ~~~~~li~~IpGNPG~~---gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFi 102 (301)
T KOG3975|consen 26 GEDKPLIVWIPGNPGLL---GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFI 102 (301)
T ss_pred CCCceEEEEecCCCCch---hHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHH
Confidence 35678999999988753 23322 2222221 2 33444444444333322222222111 1124455554333334
Q ss_pred HcCCCCCCeEEEEeeChhHHHHHHHHhhC-CC-ceeEEEecCCc
Q 006375 478 KNCYCTKEKLCIEGRSAGGLLIGAVLNMR-PD-LFKAAVAAVPF 519 (648)
Q Consensus 478 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~-~~~a~v~~~~~ 519 (648)
++..-...||.++|||-|+++++.++-.. ++ .++.+++..|-
T Consensus 103 k~~~Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPT 146 (301)
T KOG3975|consen 103 KEYVPKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPT 146 (301)
T ss_pred HHhCCCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecch
Confidence 44444558999999999999999988743 22 35566766663
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.4 Score=42.07 Aligned_cols=135 Identities=14% Similarity=0.075 Sum_probs=79.7
Q ss_pred ceEEEeccccc---CCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC-------CCeee-c-cccCccceeE
Q 006375 65 EHLILDENVKA---EGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-------GTPVG-K-PLVGVTASVE 132 (648)
Q Consensus 65 ~~~lld~n~~~---~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~-------g~~~~-~-~~~~~~~~~~ 132 (648)
.-.|.|..+-. .-.--..+....+|++|++++++.+..=+-...|.++|+.. .++.. . +.+.....+.
T Consensus 75 t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~ 154 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL 154 (327)
T ss_pred eeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeee
Confidence 34667754422 11123567888999999999999876544467888888873 33221 1 1222344588
Q ss_pred EecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEee-cCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 133 WAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 133 WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
|+|-+ .|++. .+...|-.+++.++. +++-.. ....-..+.++|+|..+++ +++...+.. ++|..+-+
T Consensus 155 Wg~l~~~ii~G-----he~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~T~Fi-T~s~Dttak--l~D~~tl~ 223 (327)
T KOG0643|consen 155 WGPLGETIIAG-----HEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDRTYFI-TGSKDTTAK--LVDVRTLE 223 (327)
T ss_pred ecccCCEEEEe-----cCCCcEEEEEcccCc---eeeechhhhccccccccccCCcceEE-ecccCccce--eeecccee
Confidence 99999 77663 334458888888762 222211 1122334678999998765 333333344 34555433
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.53 Score=47.14 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=59.7
Q ss_pred EEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEE-----eCCCCCCceEEEEECCCCCCCcEEEEeecCCCeE---
Q 006375 107 YTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYIT-----MDEILRPDKAWLHKLEADQSNDICLYHEKDDIYS--- 177 (648)
Q Consensus 107 ~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~-----~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~--- 177 (648)
.+++|+|.++++.+-....+...++.-|||| .+|... ...+.|..-|-.+|..+-....+.+...+ +++.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k-~R~~~~~ 95 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK-PRAQVVP 95 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS--B--BS-
T ss_pred ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc-chheecc
Confidence 4799999999887643334455678899999 554322 12222333355677766532222222211 1221
Q ss_pred --EEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 178 --LGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 178 --~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
.....|.|||++++. |-...+.+-++|++.++
T Consensus 96 ~~~~~~ls~dgk~~~V~-N~TPa~SVtVVDl~~~k 129 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQ-NFTPATSVTVVDLAAKK 129 (342)
T ss_dssp -GGGEEE-TTSSEEEEE-EESSSEEEEEEETTTTE
T ss_pred cccceEEccCCcEEEEE-ccCCCCeEEEEECCCCc
Confidence 135789999999885 33345778999999876
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.12 Score=42.65 Aligned_cols=42 Identities=33% Similarity=0.517 Sum_probs=34.0
Q ss_pred CeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCC
Q 006375 568 PHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSK 616 (648)
Q Consensus 568 P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~ 616 (648)
+|+||+.++.|+..|+..++++.++|.. .+++... +.||+..
T Consensus 35 ~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~---g~gHg~~ 76 (103)
T PF08386_consen 35 PPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVD---GAGHGVY 76 (103)
T ss_pred CCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEe---ccCccee
Confidence 4599999999999999999999988874 3456665 6689654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.14 E-value=5.1 Score=41.03 Aligned_cols=247 Identities=11% Similarity=0.079 Sum_probs=125.1
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec---------cccCc---cceeEEecCC-eEEEEEeCCCCCCc
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---------PLVGV---TASVEWAGNE-ALVYITMDEILRPD 151 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~---------~~~~~---~~~~~WspDg-~l~y~~~~~~~~~~ 151 (648)
..+.-|....|.-+.... .+++|+|......++. .+.+. ..+++|++.. ..+.+..+ ..
T Consensus 129 RaRymPQnp~iVAt~t~~----~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~----d~ 200 (422)
T KOG0264|consen 129 RARYMPQNPNIVATKTSS----GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD----DH 200 (422)
T ss_pred hhhhCCCCCcEEEecCCC----CCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC----CC
Confidence 334455555554443333 4788998765332211 12211 2358999887 44444332 23
Q ss_pred eEEEEECCCCCC-----CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEee-eccccee-
Q 006375 152 KAWLHKLEADQS-----NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLT-PRVVGVD- 223 (648)
Q Consensus 152 ~l~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~-~~~~~~~- 223 (648)
.+-.+++..... ..+.+|.... ...-+++|.+-...++.... .++.|.++|+.+++ +++... .....+.
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~-~~VeDV~~h~~h~~lF~sv~--dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHE-DVVEDVAWHPLHEDLFGSVG--DDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCC-cceehhhccccchhhheeec--CCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 355556554432 2334454432 33346788887777765443 45678888888532 122222 2222233
Q ss_pred eeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC--EEEEEEecCCeeEEEEEEcCCCC
Q 006375 224 TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPAVG 301 (648)
Q Consensus 224 ~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~~~~g 301 (648)
..|.|.++.|+.+... +..|...|+......--.+... ...+-.+.|+++ .++..... ..++.+|++..-|
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg~--D~rl~vWDls~ig 350 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSGT--DRRLNVWDLSRIG 350 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEeccc--CCcEEEEeccccc
Confidence 4588888877655443 3578888987643322133322 223556666664 55544443 4578888887544
Q ss_pred Cccc--ccCC-CceeecCCCe--eeeeCCCCcccccEEEEEEeeCCCCCEEEEEEC
Q 006375 302 EPLK--SLQG-GKSVEFIDPV--YSIDPSESVFSSRILRFHYSSLRTPPSVYDYDM 352 (648)
Q Consensus 302 ~~~~--~l~~-~~~i~~~~~~--~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~ 352 (648)
+... .-.+ +.++.|-..+ ..|..+++++...-++++.+.. ..+..+.+
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD---N~LqIW~~ 403 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED---NILQIWQM 403 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC---ceEEEeec
Confidence 4211 0000 0122222111 1244566777766555555444 44444444
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.12 E-value=4.4 Score=39.43 Aligned_cols=75 Identities=7% Similarity=-0.011 Sum_probs=49.4
Q ss_pred ccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEEC
Q 006375 127 VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV 206 (648)
Q Consensus 127 ~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl 206 (648)
......|+|||..+.+ .+...+|+++++-.... -.-+.... ..-.+++.|++|++.|+- ..++..++.+|.
T Consensus 49 eI~~~~F~P~gs~~aS----gG~Dr~I~LWnv~gdce-N~~~lkgH-sgAVM~l~~~~d~s~i~S---~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFAS----GGSDRAIVLWNVYGDCE-NFWVLKGH-SGAVMELHGMRDGSHILS---CGTDKTVRGWDA 119 (338)
T ss_pred eEEEEEECCCCCeEee----cCCcceEEEEecccccc-ceeeeccc-cceeEeeeeccCCCEEEE---ecCCceEEEEec
Confidence 3456899999944443 23456788888765522 22222222 334568899999999873 334578999999
Q ss_pred CCCC
Q 006375 207 SKPE 210 (648)
Q Consensus 207 ~~~~ 210 (648)
++++
T Consensus 120 ~tG~ 123 (338)
T KOG0265|consen 120 ETGK 123 (338)
T ss_pred ccce
Confidence 9987
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.95 E-value=1.8 Score=43.01 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=68.4
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee--ccccCccceeEEecCC---eEEEEEeCC--------CC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG--KPLVGVTASVEWAGNE---ALVYITMDE--------IL 148 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~--~~~~~~~~~~~WspDg---~l~y~~~~~--------~~ 148 (648)
-+.-++++-||+.+|--.. ..+|.+|-+++++-.. ...+...--++|.|+. .|...+... ..
T Consensus 237 wvr~v~v~~DGti~As~s~-----dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSN-----DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred hEEEEEecCCeeEEEecCC-----CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 3456788999998874332 3578888888873221 1122222336666654 222211110 12
Q ss_pred CCceEEEEECCCCCCCcEEEEe-ecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 149 RPDKAWLHKLEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 149 ~~~~l~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
+..-+..+++.++ ..+++ .....|.-+++++|.||||+-.+. +..|.++|+.+++
T Consensus 312 rDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD---Dktlrvwdl~~~~ 367 (406)
T KOG0295|consen 312 RDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCAD---DKTLRVWDLKNLQ 367 (406)
T ss_pred ccceEEEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEec---CCcEEEEEeccce
Confidence 2344667788776 23333 233567778999999999975443 3457778887765
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.94 E-value=3.4 Score=44.97 Aligned_cols=208 Identities=11% Similarity=0.073 Sum_probs=107.9
Q ss_pred CceEEEecccccC-----CCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccc-cCccceeEEecC
Q 006375 64 PEHLILDENVKAE-----GRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPL-VGVTASVEWAGN 136 (648)
Q Consensus 64 ~~~~lld~n~~~~-----~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~-~~~~~~~~WspD 136 (648)
+...+.|.+.-.. ...+..+.++.+++|+.-+.+... .-.+.|||+..-+.+. .+. .... ++...++
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R-----Dkvi~vwd~~~~~~l~~lp~ye~~E-~vv~l~~ 244 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR-----DKVIIVWDLVQYKKLKTLPLYESLE-SVVRLRE 244 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc-----CcEEEEeehhhhhhhheechhhhee-eEEEech
Confidence 3445667663221 023567889999999998887653 2378899996544332 122 2223 2555555
Q ss_pred -----CeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeec-CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 137 -----EALVYITMDEILRPDKAWLHKLEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 137 -----g~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
|.++++... ...+..++..++. .......+ .+.+........+++.+++++ ..+|+++|.++.+
T Consensus 245 ~~~~~~~~~~TaG~----~g~~~~~d~es~~--~~~~~~~~~~~e~~~~~~~~~~~~~l~vta----eQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 245 ELGGKGEYIITAGG----SGVVQYWDSESGK--CVYKQRQSDSEEIDHLLAIESMSQLLLVTA----EQNLFLYDEDELT 314 (775)
T ss_pred hcCCcceEEEEecC----CceEEEEecccch--hhhhhccCCchhhhcceeccccCceEEEEc----cceEEEEEccccE
Confidence 235555432 2224445544431 11000001 111211223345566666653 3678889887765
Q ss_pred ceeEeeecccce-e-eeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecC
Q 006375 211 ELRVLTPRVVGV-D-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREG 287 (648)
Q Consensus 211 ~~~~l~~~~~~~-~-~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~ 287 (648)
..+.+....+.+ + .++.|+.+.+++.+|. +..++| ++.+.. .+ +++...+. +.+++...+ .++....++
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs---~~lr~y--~~~~~~-c~-ii~GH~e~-vlSL~~~~~g~llat~sKD 386 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNS---PELRLY--TLPTSY-CQ-IIPGHTEA-VLSLDVWSSGDLLATGSKD 386 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCC---CceEEE--ecCCCc-eE-EEeCchhh-eeeeeecccCcEEEEecCC
Confidence 112222221111 1 2488888999999986 456776 665532 23 55544443 556664344 366666666
Q ss_pred CeeEEEEE
Q 006375 288 GLQKITTY 295 (648)
Q Consensus 288 ~~~~l~v~ 295 (648)
..-++|.+
T Consensus 387 ~svilWr~ 394 (775)
T KOG0319|consen 387 KSVILWRL 394 (775)
T ss_pred ceEEEEEe
Confidence 55455544
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.77 E-value=3.5 Score=45.38 Aligned_cols=191 Identities=11% Similarity=0.019 Sum_probs=104.3
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
-.+=.+.||.++-+|--++| -++++|++...+-+-.- -.+....++|.|-+ ..|.++. -..++.++.|
T Consensus 370 ~DILDlSWSKn~fLLSSSMD------KTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGS----LD~KvRiWsI 439 (712)
T KOG0283|consen 370 ADILDLSWSKNNFLLSSSMD------KTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGS----LDGKVRLWSI 439 (712)
T ss_pred hhheecccccCCeeEecccc------ccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecc----cccceEEeec
Confidence 45668899999977766555 37899999876655321 23445679999976 6666543 2345667776
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC---cee-Eee------e-cccceeeeEe
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE---ELR-VLT------P-RVVGVDTAAS 227 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~---~~~-~l~------~-~~~~~~~~~s 227 (648)
-.. .+++...-..+...+.++|||+++++.+-.+ ..+.++..+.+ ... .+. . +.-|.+ +.
T Consensus 440 ~d~----~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G---~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q--~~ 510 (712)
T KOG0283|consen 440 SDK----KVVDWNDLRDLITAVCYSPDGKGAVIGTFNG---YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ--FF 510 (712)
T ss_pred CcC----eeEeehhhhhhheeEEeccCCceEEEEEecc---EEEEEEccCCeEEEeeeEeeccCccccCceeeeeE--ec
Confidence 543 3333322234555788999999999876432 33444444332 000 010 0 111222 22
Q ss_pred e-cCCEEEEEeccCCCCCcEEEEEeCCCCCcceeE--ecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 228 H-RGNHFFITRRSDELFNSELLACPVDNTSETTVL--IPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 228 ~-dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
| +-+.+++++++ .+|-++|..+......+ +.......-..+..++++|+... + ...+++|+.+
T Consensus 511 p~~~~~vLVTSnD-----SrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s-e--Ds~VYiW~~~ 576 (712)
T KOG0283|consen 511 PGDPDEVLVTSND-----SRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS-E--DSWVYIWKND 576 (712)
T ss_pred CCCCCeEEEecCC-----CceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee-c--CceEEEEeCC
Confidence 2 22357777775 36777777431111100 10111112234555667776555 3 2578888875
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.8 Score=43.74 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=62.2
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCC-eEEEEEeCCCCCC------ceE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRP------DKA 153 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg-~l~y~~~~~~~~~------~~l 153 (648)
+..+.||||+.++...+- ...++++|+..|....... ......++|.|-+ .|.-.+.+...+. ..+
T Consensus 126 iydL~Ws~d~~~l~s~s~-----dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~ 200 (434)
T KOG1009|consen 126 IYDLAWSPDSNFLVSGSV-----DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVI 200 (434)
T ss_pred hhhhhccCCCceeeeeec-----cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeee
Confidence 446789999999987653 3578999999998775322 2234569999988 6655554432111 112
Q ss_pred EEEE-----CCCC---CCCcEEEEee-cCCCeEEEEEeCCCCcEEEEEE
Q 006375 154 WLHK-----LEAD---QSNDICLYHE-KDDIYSLGLQASESKKFLFIAS 193 (648)
Q Consensus 154 ~~~~-----l~~~---~~~~~~~~~~-~~~~~~~~~~~s~Dg~~l~~~~ 193 (648)
+++. .+.. ...-..+|.. .-..|+...+|||||..++.-+
T Consensus 201 ~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 201 KRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 2221 0100 0111223322 2245677789999998877543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.55 E-value=1.5 Score=44.08 Aligned_cols=144 Identities=17% Similarity=0.139 Sum_probs=77.6
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
-.++.+.|.|--.-+..+. |. .++|.+||+.||+.+.. .-++...++.|+-||.++.++.. ..+|..++..
T Consensus 132 rrVg~V~wHPtA~NVLlsa---g~-Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~Ttck----DKkvRv~dpr 203 (472)
T KOG0303|consen 132 RRVGLVQWHPTAPNVLLSA---GS-DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCK----DKKVRVIDPR 203 (472)
T ss_pred eeEEEEeecccchhhHhhc---cC-CceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecc----cceeEEEcCC
Confidence 3455666666544444332 22 46899999999997642 34555667999999955555542 2457777776
Q ss_pred CCCCCcEEEEeec--CCCeEEEEEeCCCCcEEEEEE-ccccccEEEEEECCCCCce---eEeeecccce-eeeEeecCCE
Q 006375 160 ADQSNDICLYHEK--DDIYSLGLQASESKKFLFIAS-ESKITRFVFYLDVSKPEEL---RVLTPRVVGV-DTAASHRGNH 232 (648)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~~~~~~~s~Dg~~l~~~~-~~~~~~~l~~~dl~~~~~~---~~l~~~~~~~-~~~~s~dg~~ 232 (648)
++ +++.+.. ...-....-|-.+|+ |+-+. +......+-++|.+.-+++ +.|-.. .|+ ..++++|.+.
T Consensus 204 ~~----~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~i 277 (472)
T KOG0303|consen 204 RG----TVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSI 277 (472)
T ss_pred CC----cEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCE
Confidence 65 2232221 011112345667777 33222 2233456666665554312 222111 233 3457777776
Q ss_pred EEEEec
Q 006375 233 FFITRR 238 (648)
Q Consensus 233 l~~~~~ 238 (648)
||+..-
T Consensus 278 vYl~GK 283 (472)
T KOG0303|consen 278 VYLCGK 283 (472)
T ss_pred EEEEec
Confidence 665543
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.074 Score=50.78 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=16.9
Q ss_pred CeEEEEeeChhHHHHHHHHh
Q 006375 485 EKLCIEGRSAGGLLIGAVLN 504 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~ 504 (648)
.+|.++|||+||.++-.++.
T Consensus 78 ~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 78 RKISFIGHSLGGLIARYALG 97 (217)
T ss_pred ccceEEEecccHHHHHHHHH
Confidence 58999999999998866555
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.36 Score=59.64 Aligned_cols=99 Identities=12% Similarity=0.021 Sum_probs=62.5
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.++++||+.+... .|......| ..++.|+.++.+|.+.. .....+++++.+.+...+..-. ...
T Consensus 1068 ~~~l~~lh~~~g~~~--~~~~l~~~l-~~~~~v~~~~~~g~~~~----------~~~~~~l~~la~~~~~~i~~~~-~~~ 1133 (1296)
T PRK10252 1068 GPTLFCFHPASGFAW--QFSVLSRYL-DPQWSIYGIQSPRPDGP----------MQTATSLDEVCEAHLATLLEQQ-PHG 1133 (1296)
T ss_pred CCCeEEecCCCCchH--HHHHHHHhc-CCCCcEEEEECCCCCCC----------CCCCCCHHHHHHHHHHHHHhhC-CCC
Confidence 366889999766432 344333333 45799999999876532 1122455665554443333211 124
Q ss_pred eEEEEeeChhHHHHHHHHhh---CCCceeEEEecCC
Q 006375 486 KLCIEGRSAGGLLIGAVLNM---RPDLFKAAVAAVP 518 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~---~p~~~~a~v~~~~ 518 (648)
+..++|+|+||.++..++.+ +++.+..+++..+
T Consensus 1134 p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1134 PYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred CEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 79999999999999888875 5677777776554
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.49 Score=47.63 Aligned_cols=98 Identities=13% Similarity=0.033 Sum_probs=66.0
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCc-----cceeEEecCC-eEEEEEeCCCCCCceEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV-----TASVEWAGNE-ALVYITMDEILRPDKAW 154 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~-----~~~~~WspDg-~l~y~~~~~~~~~~~l~ 154 (648)
.+.++.+|+||..|.-.+. ..++-++|+.+.++... ..++. ...+.||||+ +++-.+. ...||
T Consensus 343 ~vtSl~ls~~g~~lLsssR-----Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~-----dgsv~ 412 (459)
T KOG0288|consen 343 RVTSLDLSMDGLELLSSSR-----DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA-----DGSVY 412 (459)
T ss_pred ceeeEeeccCCeEEeeecC-----CCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC-----CCcEE
Confidence 7788999999998876532 23789999999887642 22221 4568899999 6655433 34589
Q ss_pred EEECCCCCCCcEEEEeecC-CCeEEEEEeCCCCcEEEE
Q 006375 155 LHKLEADQSNDICLYHEKD-DIYSLGLQASESKKFLFI 191 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~-~~~~~~~~~s~Dg~~l~~ 191 (648)
++++.++.- +.+..... ..-...+.|+|.|++++-
T Consensus 413 iW~v~tgKl--E~~l~~s~s~~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 413 IWSVFTGKL--EKVLSLSTSNAAITSLSWNPSGSGLLS 448 (459)
T ss_pred EEEccCceE--EEEeccCCCCcceEEEEEcCCCchhhc
Confidence 999888733 23333222 213457899999999874
|
|
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.26 Score=51.68 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=54.2
Q ss_pred CCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHH
Q 006375 423 AFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAV 502 (648)
Q Consensus 423 ~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~ 502 (648)
.|...+..|.+.||..- .+++ +.+-+|+.... .....+..+...++.+.+.. ..+|.|+||||||.++..+
T Consensus 66 ~~~~li~~L~~~GY~~~-~~l~---~~pYDWR~~~~--~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~f 136 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRG-KDLF---AAPYDWRLSPA--ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYF 136 (389)
T ss_pred hHHHHHHHHHhcCcccC-CEEE---EEeechhhchh--hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHH
Confidence 46677788888787631 0111 11123443222 11233456666777665543 5899999999999999998
Q ss_pred HhhCCC------ceeEEEecCCc
Q 006375 503 LNMRPD------LFKAAVAAVPF 519 (648)
Q Consensus 503 ~~~~p~------~~~a~v~~~~~ 519 (648)
+...+. .+++.|..++.
T Consensus 137 l~~~~~~~W~~~~i~~~i~i~~p 159 (389)
T PF02450_consen 137 LQWMPQEEWKDKYIKRFISIGTP 159 (389)
T ss_pred HHhccchhhHHhhhhEEEEeCCC
Confidence 887643 36677766653
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=93.07 E-value=1.6 Score=42.13 Aligned_cols=142 Identities=11% Similarity=0.184 Sum_probs=83.1
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-ec-----ccc--CccceeEEec--CC-eEEEEEeCCCCCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GK-----PLV--GVTASVEWAG--NE-ALVYITMDEILRP 150 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-~~-----~~~--~~~~~~~Wsp--Dg-~l~y~~~~~~~~~ 150 (648)
.+..+.|-|++++||-..+ .+|.+|+++.+..+ .. ... ..+.+-.||| || .++-+..
T Consensus 125 ~i~cvew~Pns~klasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d------ 192 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD------ 192 (370)
T ss_pred ceeeEEEcCCCCeeEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC------
Confidence 5678899999999997763 47889999877652 11 111 1245688998 67 6654432
Q ss_pred ceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeeccccee-eeEee
Q 006375 151 DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVD-TAASH 228 (648)
Q Consensus 151 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~~~~-~~~s~ 228 (648)
..++.+++.+.. +.. -.+........+..+.|..++++++..+. .-|.++|+...+ +.+.+.+..-++. ..+.|
T Consensus 193 ~tl~~~D~RT~~-~~~-sI~dAHgq~vrdlDfNpnkq~~lvt~gDd--gyvriWD~R~tk~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 193 STLQFWDLRTMK-KNN-SIEDAHGQRVRDLDFNPNKQHILVTCGDD--GYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred CcEEEEEccchh-hhc-chhhhhcceeeeccCCCCceEEEEEcCCC--ccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence 237788887652 211 22222233445677889999998766544 456667776554 2333333222221 12445
Q ss_pred cCCEEEEEecc
Q 006375 229 RGNHFFITRRS 239 (648)
Q Consensus 229 dg~~l~~~~~~ 239 (648)
--++|++....
T Consensus 269 ~hdqLiLs~~S 279 (370)
T KOG1007|consen 269 EHDQLILSGGS 279 (370)
T ss_pred ccceEEEecCC
Confidence 55566555443
|
|
| >KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.8 Score=41.61 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=52.4
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
.| +|+.||-...+....+....+.+.+. |..|.+.+.--+ -...|.. +..+.+.-+.+.+. +..--+
T Consensus 24 ~P-~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig~g--~~~s~l~--------pl~~Qv~~~ce~v~-~m~~ls 91 (296)
T KOG2541|consen 24 VP-VIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIGDG--IKDSSLM--------PLWEQVDVACEKVK-QMPELS 91 (296)
T ss_pred CC-EEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEecCC--cchhhhc--------cHHHHHHHHHHHHh-cchhcc
Confidence 44 56679965555554455444555554 888888875322 1122221 22234444555555 333346
Q ss_pred CeEEEEeeChhHHHHHHHHhhCC
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRP 507 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p 507 (648)
+-..++|.|.||.++=+++..-+
T Consensus 92 qGynivg~SQGglv~Raliq~cd 114 (296)
T KOG2541|consen 92 QGYNIVGYSQGGLVARALIQFCD 114 (296)
T ss_pred CceEEEEEccccHHHHHHHHhCC
Confidence 78999999999977766665543
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.73 Score=48.63 Aligned_cols=140 Identities=16% Similarity=0.062 Sum_probs=80.8
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhH----------------HHHHHCCCEEEEEcc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSR----------------LSLLDRGFIFAIAQI 443 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~----------------~~l~~~G~~v~~~~~ 443 (648)
.+.-..+..+..|++--.. .....|+||++-||||=+.-.+...+. -.|. +=..++..|.
T Consensus 50 ~v~~~~~~~LFYwf~eS~~---~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWn-k~aNiLfLd~ 125 (454)
T KOG1282|consen 50 TVNESEGRQLFYWFFESEN---NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWN-KEANILFLDQ 125 (454)
T ss_pred ECCCCCCceEEEEEEEccC---CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCcccc-ccccEEEEec
Confidence 3333457778888665432 234579999999998754322221111 0122 1245777777
Q ss_pred CCCCCCChhhhhcccccCCCCcHhHHH-HHHHHHHHcCCCCCCeEEEEeeChhHH----HHHHHHhhCC------CceeE
Q 006375 444 RGGGELGRQWYENGKFLKKKNTFTDFI-ACAEYLIKNCYCTKEKLCIEGRSAGGL----LIGAVLNMRP------DLFKA 512 (648)
Q Consensus 444 rG~g~~g~~~~~~~~~~~~~~~~~D~~-~~~~~l~~~~~~d~~~i~i~G~S~GG~----l~~~~~~~~p------~~~~a 512 (648)
+-|.|+.-.-........-..+.+|.. ...+|+.+.+.-....+.|.|.|++|. ||..+...+. --+++
T Consensus 126 PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG 205 (454)
T KOG1282|consen 126 PVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKG 205 (454)
T ss_pred CCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceE
Confidence 765555332111111111122334444 556677776655567999999999997 4444444331 14789
Q ss_pred EEecCCccccc
Q 006375 513 AVAAVPFVDVL 523 (648)
Q Consensus 513 ~v~~~~~~d~~ 523 (648)
+++..|++|..
T Consensus 206 ~~IGNg~td~~ 216 (454)
T KOG1282|consen 206 YAIGNGLTDPE 216 (454)
T ss_pred EEecCcccCcc
Confidence 99999998854
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.01 E-value=2.1 Score=43.17 Aligned_cols=103 Identities=21% Similarity=0.269 Sum_probs=62.5
Q ss_pred CcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECC--------C-----CC-eee-ccc----cCccceeEEecCC-e
Q 006375 79 GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE--------T-----GT-PVG-KPL----VGVTASVEWAGNE-A 138 (648)
Q Consensus 79 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~--------~-----g~-~~~-~~~----~~~~~~~~WspDg-~ 138 (648)
...++..++|||+|..||=..| ..++.+|... + .+ .+. ... .++ ...+|+||+ .
T Consensus 64 H~~aVN~vRf~p~gelLASg~D-----~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~di-ydL~Ws~d~~~ 137 (434)
T KOG1009|consen 64 HTRAVNVVRFSPDGELLASGGD-----GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDI-YDLAWSPDSNF 137 (434)
T ss_pred CcceeEEEEEcCCcCeeeecCC-----CceEEEEEecCcCCccccchhhhCccceEEEEEecccccch-hhhhccCCCce
Confidence 4578889999999999985443 2244444433 3 11 111 111 222 349999999 6
Q ss_pred EEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcc
Q 006375 139 LVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES 195 (648)
Q Consensus 139 l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~ 195 (648)
+...+.+. .++.+++..++ -..+..+ +..+..+++|.|-++++.-.+.+
T Consensus 138 l~s~s~dn-----s~~l~Dv~~G~--l~~~~~d-h~~yvqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 138 LVSGSVDN-----SVRLWDVHAGQ--LLAILDD-HEHYVQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred eeeeeccc-----eEEEEEeccce--eEeeccc-cccccceeecchhhhhhhhhccC
Confidence 66655433 37888888873 2223322 24566678999999998765443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=93.01 E-value=8.8 Score=36.79 Aligned_cols=186 Identities=12% Similarity=0.093 Sum_probs=92.0
Q ss_pred eCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcE
Q 006375 88 VSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDI 166 (648)
Q Consensus 88 ~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~ 166 (648)
..+++++|... +.. ..|+.+|.++|+.+-. ..++......-..++.+++... ...|+.+++.++.....
T Consensus 32 ~~~~~~~v~~~-~~~----~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~-----~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 32 AVPDGGRVYVA-SGD----GNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTS-----DGSLYALDAKTGKVLWS 101 (238)
T ss_dssp EEEETTEEEEE-ETT----SEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEET-----TSEEEEEETTTSCEEEE
T ss_pred EEEeCCEEEEE-cCC----CEEEEEECCCCCEEEEeeccccccceeeecccccccccc-----eeeeEecccCCcceeee
Confidence 34456655444 333 3899999999987632 2333222122223447765542 12799999888732111
Q ss_pred EEEeec--CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCc-eeEeeecccc-e--------eeeEeecCCEEE
Q 006375 167 CLYHEK--DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLTPRVVG-V--------DTAASHRGNHFF 234 (648)
Q Consensus 167 ~~~~~~--~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~-~~~l~~~~~~-~--------~~~~s~dg~~l~ 234 (648)
..... ............++..+++... ...|+.+|+++++. +..-...... . .....-.++.+|
T Consensus 102 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (238)
T PF13360_consen 102 -IYLTSSPPAGVRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVY 177 (238)
T ss_dssp -EEE-SSCTCSTB--SEEEEETTEEEEEET---CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEE
T ss_pred -eccccccccccccccCceEecCEEEEEec---cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEE
Confidence 11111 1111112222233666665443 56789999988871 1111111111 0 112222334666
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccce-EEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 235 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQD-IQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
+.+.. + +++.+|+.+ +...|..+ ... ... +...++.+++.. ++ ..+..+++.+
T Consensus 178 ~~~~~-g----~~~~~d~~t-g~~~w~~~--~~~-~~~~~~~~~~~l~~~~-~~--~~l~~~d~~t 231 (238)
T PF13360_consen 178 VSSGD-G----RVVAVDLAT-GEKLWSKP--ISG-IYSLPSVDGGTLYVTS-SD--GRLYALDLKT 231 (238)
T ss_dssp EECCT-S----SEEEEETTT-TEEEEEEC--SS--ECECEECCCTEEEEEE-TT--TEEEEEETTT
T ss_pred EEcCC-C----eEEEEECCC-CCEEEEec--CCC-ccCCceeeCCEEEEEe-CC--CEEEEEECCC
Confidence 65544 2 366678877 44446333 121 333 556667776666 33 4677788773
|
... |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=92.85 E-value=9.1 Score=37.15 Aligned_cols=137 Identities=14% Similarity=0.131 Sum_probs=79.9
Q ss_pred EEEEEEECCCCCe---eeccc--cCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCC-CeEEE
Q 006375 107 YTVYVIDIETGTP---VGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDD-IYSLG 179 (648)
Q Consensus 107 ~~l~v~dl~~g~~---~~~~~--~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~-~~~~~ 179 (648)
.+.-|||+++|.. .+.-+ +.-...++|+.+| .+|-+.. ....|..+||.... -.+.+|+.+.+ .-.+.
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg----aDGSvRmFDLR~le-HSTIIYE~p~~~~pLlR 247 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVG----ADGSVRMFDLRSLE-HSTIIYEDPSPSTPLLR 247 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEec----CCCcEEEEEecccc-cceEEecCCCCCCccee
Confidence 4788889998733 22212 1123459999988 6654432 22347788887763 45678876652 23456
Q ss_pred EEeCCC-CcEEEEEEccccccEEEEEECCCCC-ceeEeeeccccee-eeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 180 LQASES-KKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 180 ~~~s~D-g~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
.+|.+. -++++- -..+.+++.++|+.-+. +...|......+. ..|.|....-.-+.. ...+....|+..
T Consensus 248 LswnkqDpnymAT--f~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG----DD~qaliWDl~q 319 (364)
T KOG0290|consen 248 LSWNKQDPNYMAT--FAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG----DDCQALIWDLQQ 319 (364)
T ss_pred eccCcCCchHHhh--hhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC----CcceEEEEeccc
Confidence 777774 445432 23456889999998776 3333433333222 458887654433332 235777788865
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.31 Score=49.98 Aligned_cols=97 Identities=15% Similarity=0.085 Sum_probs=57.9
Q ss_pred EEEEecCCCCCCCCCCCchhHHHHHHCCCE---EEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 408 LLLYGYGSYEICNDPAFNSSRLSLLDRGFI---FAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 408 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~---v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
.++++||.... ...|......+...|+. +..+++.+....+..+ ...+-+.+-++.+.... ..
T Consensus 61 pivlVhG~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~ql~~~V~~~l~~~--ga 126 (336)
T COG1075 61 PIVLVHGLGGG--YGNFLPLDYRLAILGWLTNGVYAFELSGGDGTYSLA----------VRGEQLFAYVDEVLAKT--GA 126 (336)
T ss_pred eEEEEccCcCC--cchhhhhhhhhcchHHHhcccccccccccCCCcccc----------ccHHHHHHHHHHHHhhc--CC
Confidence 58888995222 22244444445555776 7777766542111111 12233444444444332 23
Q ss_pred CeEEEEeeChhHHHHHHHHhhCC--CceeEEEecCC
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRP--DLFKAAVAAVP 518 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p--~~~~a~v~~~~ 518 (648)
.++.++||||||.++-.++...+ ..++.++...+
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~t 162 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGT 162 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEecc
Confidence 89999999999999988888877 67887776654
|
|
| >PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.31 Score=35.89 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=28.5
Q ss_pred CCcceEEEEEeCCCCeEEeEEEEEeeC-ccccCCCCcEEEEecCCCCCCCC
Q 006375 372 NNYFTERKWASASDGTQIPICIVYRKN-LVKLDGSDPLLLYGYGSYEICND 421 (648)
Q Consensus 372 ~~~~~~~~~~~s~~g~~i~~~l~~~~~-~~~~~~~~P~vl~~hGg~~~~~~ 421 (648)
-.|.+|...+++.||--+.++-+.++. ......+.|.|++.||-.+++..
T Consensus 8 ~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~ 58 (63)
T PF04083_consen 8 HGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDD 58 (63)
T ss_dssp TT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGG
T ss_pred cCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChHH
Confidence 367889999999999988888776665 11235668999999997665543
|
The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B. |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.82 E-value=2.1 Score=40.43 Aligned_cols=111 Identities=15% Similarity=0.058 Sum_probs=68.2
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
.+.++.+|+||++|..+- | ..|..+|.++=..+. -..+-...+.+-+|+..+|.. .++...+|.+|..+
T Consensus 186 ~VtSlEvs~dG~ilTia~---g---ssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVa----Gged~~~~kfDy~T 255 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIAY---G---SSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVA----GGEDFKVYKFDYNT 255 (334)
T ss_pred CCcceeeccCCCEEEEec---C---ceeEEeccccccceeeccCccccccccccCCCceEEe----cCcceEEEEEeccC
Confidence 456788999999876542 3 267888887755442 223333334778888855443 35567799999999
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcc-ccccEEEEEEC
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASES-KITRFVFYLDV 206 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~dl 206 (648)
+ +++-.+......-..-+.+||||..- .+.+ .++-+||....
T Consensus 256 g--eEi~~~nkgh~gpVhcVrFSPdGE~y--AsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 256 G--EEIGSYNKGHFGPVHCVRFSPDGELY--ASGSEDGTIRLWQTTP 298 (334)
T ss_pred C--ceeeecccCCCCceEEEEECCCCcee--eccCCCceEEEEEecC
Confidence 8 45555522223334457899999643 3333 34456666543
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.79 E-value=11 Score=41.78 Aligned_cols=165 Identities=18% Similarity=0.177 Sum_probs=89.0
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCe----eecccc-CccceeEEecCCeEEEEEeCCCCCCceEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP----VGKPLV-GVTASVEWAGNEALVYITMDEILRPDKAWL 155 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~----~~~~~~-~~~~~~~WspDg~l~y~~~~~~~~~~~l~~ 155 (648)
..+..+.+|+||+.+|+... . ...+++-.+..+.. ...... .....++|.++|+++-. ........-|+.
T Consensus 363 ~~~~s~avS~~g~~~A~v~~-~---~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g~vWtv-d~~~~~~~vl~v 437 (599)
T PRK13613 363 VPLRRVAVSRDESRAAGISA-D---GDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRGDLWVV-DRDPADPRLLWL 437 (599)
T ss_pred CCccceEEcCCCceEEEEcC-C---CcEEEEeccCCCCccccccceeeccCcccCCcCcCCCCEEEe-cCCCCCceEEEE
Confidence 45678999999999999843 2 24788877654443 111122 22456899988865533 211122222333
Q ss_pred EECCCCCCCcEEEEe-ecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECC---CCC----ceeEeeecccc-eeeeE
Q 006375 156 HKLEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS---KPE----ELRVLTPRVVG-VDTAA 226 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~-~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~---~~~----~~~~l~~~~~~-~~~~~ 226 (648)
.. .++. ...+-. .....-...+..|+||-++++.....+...||+--+. .+. .++.+...... ....|
T Consensus 438 ~~-~~G~--~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W 514 (599)
T PRK13613 438 LQ-GDGE--PVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSW 514 (599)
T ss_pred Ec-CCCc--EEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEE
Confidence 33 2331 111111 1112235578999999999887766555666654332 222 12223222222 23457
Q ss_pred eecCCEEEEEeccCCCCCcEEEEEeCCCC
Q 006375 227 SHRGNHFFITRRSDELFNSELLACPVDNT 255 (648)
Q Consensus 227 s~dg~~l~~~~~~~~~~~~~l~~~~~~~~ 255 (648)
..++. |+++... ...+..++++.+++.
T Consensus 515 ~~~~s-L~Vlg~~-~~~~~~v~~v~vdG~ 541 (599)
T PRK13613 515 AGDSQ-LVVLGRE-EGGVQQARYVQVDGS 541 (599)
T ss_pred cCCCE-EEEEecc-CCCCcceEEEecCCc
Confidence 77665 6554432 224567888888764
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.7 Score=45.13 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=65.9
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC-ccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 161 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~ 161 (648)
....+-|.| .||.... .| .+.|+|.++...+.....+ ..+-+.++||| .|+..+.| ..||++.+..+
T Consensus 411 ~~~~fhpsg-~va~Gt~-~G----~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d-----~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 411 ECADFHPSG-VVAVGTA-TG----RWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD-----NHIYIYRVSAN 479 (626)
T ss_pred eEeeccCcc-eEEEeec-cc----eEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCC-----CeEEEEEECCC
Confidence 345677888 6665543 23 7899999986665443333 35568999999 88776543 34787777665
Q ss_pred CCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEE
Q 006375 162 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYL 204 (648)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 204 (648)
.. ...........+...+.||+|++++.- ++ .+-+|..+
T Consensus 480 g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~--~S-~d~eiLyW 518 (626)
T KOG2106|consen 480 GR-KYSRVGKCSGSPITHLDWSSDSQFLVS--NS-GDYEILYW 518 (626)
T ss_pred Cc-EEEEeeeecCceeEEeeecCCCceEEe--cc-CceEEEEE
Confidence 32 222222222356667899999999863 33 33455444
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=92.75 E-value=10 Score=36.84 Aligned_cols=254 Identities=11% Similarity=0.085 Sum_probs=122.3
Q ss_pred EEEeeEEeC--CC-CCEEEEEEeCC-CCeEEEEEEEECCCCCeeecc-ccCc--cceeEEecCC-eEEEEEe-CCCCCCc
Q 006375 81 YSVGCFQVS--PD-NKLVAYAEDTK-GDEIYTVYVIDIETGTPVGKP-LVGV--TASVEWAGNE-ALVYITM-DEILRPD 151 (648)
Q Consensus 81 ~~~~~~~~S--PD-G~~la~~~~~~-G~e~~~l~v~dl~~g~~~~~~-~~~~--~~~~~WspDg-~l~y~~~-~~~~~~~ 151 (648)
+.+.++.|| || .-+||..+-.. -+-+.+|.-.|.++++.+.+. ++.. ..-+.|.||. ..+ ... ......-
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~-pdlLATs~D~L 123 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVY-PDLLATSSDFL 123 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccC-cchhhcccCeE
Confidence 445566677 44 44677664221 112456666677788877543 2222 3458899997 442 111 0112223
Q ss_pred eEEEEECCCCCCCcEEEEee-cCCCe---EEEEEeCC-CCcEEEEEEccccccEEEEEECCCCC----ceeEeeecccce
Q 006375 152 KAWLHKLEADQSNDICLYHE-KDDIY---SLGLQASE-SKKFLFIASESKITRFVFYLDVSKPE----ELRVLTPRVVGV 222 (648)
Q Consensus 152 ~l~~~~l~~~~~~~~~~~~~-~~~~~---~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~dl~~~~----~~~~l~~~~~~~ 222 (648)
+||+...+........++.. ....+ ..++.|.. |-++| .+++-.++--|| |++++. +.+++.....-.
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~i-gtSSiDTTCTiW--die~~~~~~vkTQLIAHDKEV~ 200 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLI-GTSSIDTTCTIW--DIETGVSGTVKTQLIAHDKEVY 200 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCccee-EeecccCeEEEE--EEeeccccceeeEEEecCccee
Confidence 34444332221111111111 11111 23456665 44444 444444455555 555542 355666555555
Q ss_pred eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCC-CcccceEEEeCC-EEEEEEecCCeeEEEEEEcCCC
Q 006375 223 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE-SVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAV 300 (648)
Q Consensus 223 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~~ 300 (648)
+..|+..|..++..-..+ +.+...|+......+.+..... ...+..++|.+. --++........++.++++...
T Consensus 201 DIaf~~~s~~~FASvgaD----GSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P 276 (364)
T KOG0290|consen 201 DIAFLKGSRDVFASVGAD----GSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP 276 (364)
T ss_pred EEEeccCccceEEEecCC----CcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC
Confidence 667888666665554433 4566677766444443333222 445666777663 2233333334456777776543
Q ss_pred CCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECC
Q 006375 301 GEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMD 353 (648)
Q Consensus 301 g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~ 353 (648)
...+. .+-....+|.++.+.+.+..-+++.... .+...+|+.
T Consensus 277 ~tpva--------~L~~H~a~VNgIaWaPhS~~hictaGDD---~qaliWDl~ 318 (364)
T KOG0290|consen 277 CTPVA--------RLRNHQASVNGIAWAPHSSSHICTAGDD---CQALIWDLQ 318 (364)
T ss_pred Cccee--------hhhcCcccccceEecCCCCceeeecCCc---ceEEEEecc
Confidence 32211 1222233455666666666555544332 234445554
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.70 E-value=13 Score=38.08 Aligned_cols=198 Identities=10% Similarity=0.087 Sum_probs=98.0
Q ss_pred CceEEEeccccc-----CCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee--eccccCccceeEEecC
Q 006375 64 PEHLILDENVKA-----EGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV--GKPLVGVTASVEWAGN 136 (648)
Q Consensus 64 ~~~~lld~n~~~-----~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~--~~~~~~~~~~~~WspD 136 (648)
.+.|++|-.... +|| .-.+....++||...++-.+. ...|+||.+-..... ....+.......-.|.
T Consensus 241 ~~av~~d~~s~q~l~~~~Gh-~kki~~v~~~~~~~~v~~aSa-----d~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t 314 (506)
T KOG0289|consen 241 KTAVLFDKPSNQILATLKGH-TKKITSVKFHKDLDTVITASA-----DEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT 314 (506)
T ss_pred CceEEEecchhhhhhhccCc-ceEEEEEEeccchhheeecCC-----cceEEeeccccccCccccccccccceeeeeccC
Confidence 456778854322 222 456778899999987664432 457777766443321 1122222233444555
Q ss_pred C-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEee-cCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeE
Q 006375 137 E-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV 214 (648)
Q Consensus 137 g-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~ 214 (648)
| +|+-...+. ..-..++.++ .-..+... ....-.....+.||| ++|.... .++.|-++|+..+.....
T Consensus 315 geYllsAs~d~-----~w~Fsd~~~g--~~lt~vs~~~s~v~~ts~~fHpDg--Lifgtgt-~d~~vkiwdlks~~~~a~ 384 (506)
T KOG0289|consen 315 GEYLLSASNDG-----TWAFSDISSG--SQLTVVSDETSDVEYTSAAFHPDG--LIFGTGT-PDGVVKIWDLKSQTNVAK 384 (506)
T ss_pred CcEEEEecCCc-----eEEEEEccCC--cEEEEEeeccccceeEEeeEcCCc--eEEeccC-CCceEEEEEcCCcccccc
Confidence 5 443322211 0112334443 11222211 111223367899999 4443332 346788889887652222
Q ss_pred eeecccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEE--eCCEEEEE
Q 006375 215 LTPRVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL--FIDHLAVY 283 (648)
Q Consensus 215 l~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~ 283 (648)
.-.....+ ...|+.+|=||+..+++ ..+...|+.+....+ .++-++...+.++++ .+.++...
T Consensus 385 Fpght~~vk~i~FsENGY~Lat~add-----~~V~lwDLRKl~n~k-t~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 385 FPGHTGPVKAISFSENGYWLATAADD-----GSVKLWDLRKLKNFK-TIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred CCCCCCceeEEEeccCceEEEEEecC-----CeEEEEEehhhcccc-eeeccccccceeEEEcCCCCeEEee
Confidence 22222222 34588888777666664 237777887644333 222232223444444 45555544
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.66 E-value=8 Score=42.43 Aligned_cols=192 Identities=17% Similarity=0.132 Sum_probs=96.4
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECC-----CCCe---------eeccccCccceeEEecCC-eEEEEEeC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE-----TGTP---------VGKPLVGVTASVEWAGNE-ALVYITMD 145 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~-----~g~~---------~~~~~~~~~~~~~WspDg-~l~y~~~~ 145 (648)
-.+..++.+||++..+-.+ ...+|.+||.. .|.. +...+++-...++.|||| .++..-.|
T Consensus 455 gaIWsi~~~pD~~g~vT~s-----aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLd 529 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGS-----ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLD 529 (888)
T ss_pred cceeeeeecCCCCceEEec-----CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEecc
Confidence 4678889999999876432 23466666543 1221 122345545569999999 55544333
Q ss_pred CCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-ee
Q 006375 146 EILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DT 224 (648)
Q Consensus 146 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~ 224 (648)
. ..+||.+| +- +=-..+|...-|.. ....|||++.|+-.+.+ -+-.+|=+| =|.=-+-+..+.+.+ ..
T Consensus 530 n---TVkVyflD--tl-KFflsLYGHkLPV~--smDIS~DSklivTgSAD-KnVKiWGLd--FGDCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 530 N---TVKVYFLD--TL-KFFLSLYGHKLPVL--SMDISPDSKLIVTGSAD-KNVKIWGLD--FGDCHKSFFAHDDSVMSV 598 (888)
T ss_pred C---eEEEEEec--ce-eeeeeeccccccee--EEeccCCcCeEEeccCC-CceEEeccc--cchhhhhhhcccCceeEE
Confidence 2 34455543 33 11234554443433 45679999877643332 223444444 343011223333332 23
Q ss_pred eEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEc
Q 006375 225 AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRL 297 (648)
Q Consensus 225 ~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~ 297 (648)
.+-| ..+++|+..++ .++-..|.++....+.+-.|... +.......++ .++...++- .|++|..
T Consensus 599 ~F~P-~~~~FFt~gKD----~kvKqWDg~kFe~iq~L~~H~~e--v~cLav~~~G~~vvs~shD~--sIRlwE~ 663 (888)
T KOG0306|consen 599 QFLP-KTHLFFTCGKD----GKVKQWDGEKFEEIQKLDGHHSE--VWCLAVSPNGSFVVSSSHDK--SIRLWER 663 (888)
T ss_pred EEcc-cceeEEEecCc----ceEEeechhhhhhheeeccchhe--eeeeEEcCCCCeEEeccCCc--eeEeeec
Confidence 4666 45677887764 46666776554333323333322 3334444443 334444433 3444443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.61 E-value=12 Score=38.75 Aligned_cols=58 Identities=7% Similarity=0.085 Sum_probs=40.1
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCCeEEEEEeC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNEALVYITMD 145 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg~l~y~~~~ 145 (648)
+..+.-||+|.+|+-. .+.-+||+|.+.+|..+..-... ...-+.|+.||..+++...
T Consensus 84 v~al~s~n~G~~l~ag-----~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAG-----TISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred eeeeecCCCceEEEee-----cccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC
Confidence 5677889999988743 24458999999999977422111 1345889999966666653
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.58 E-value=2.4 Score=42.88 Aligned_cols=215 Identities=13% Similarity=0.095 Sum_probs=115.2
Q ss_pred CCceEEEecccc----cCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCe-eeccccCc-cceeEEecC
Q 006375 63 PPEHLILDENVK----AEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGKPLVGV-TASVEWAGN 136 (648)
Q Consensus 63 ~~~~~lld~n~~----~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~-~~~~~~~~-~~~~~WspD 136 (648)
++-.-..+||-- ...+..-++..+++||.-.+.+=.++ + .+|.|||..-.+. +.....+. ...+.|.|.
T Consensus 159 gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~Sd-D----g~ikiWdf~~~kee~vL~GHgwdVksvdWHP~ 233 (464)
T KOG0284|consen 159 GGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD-D----GTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT 233 (464)
T ss_pred CceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecC-C----CeEEEEeccCCchhheeccCCCCcceeccCCc
Confidence 344445666531 11233457889999995554443222 2 3789999765443 22233332 345999999
Q ss_pred CeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEee
Q 006375 137 EALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT 216 (648)
Q Consensus 137 g~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~ 216 (648)
-.++++...++ -|-++|..++. -..-.. ......+.+.|++++.||+-.+. +..+.++|+.+.+++....
T Consensus 234 kgLiasgskDn----lVKlWDprSg~--cl~tlh-~HKntVl~~~f~~n~N~Llt~sk---D~~~kv~DiR~mkEl~~~r 303 (464)
T KOG0284|consen 234 KGLIASGSKDN----LVKLWDPRSGS--CLATLH-GHKNTVLAVKFNPNGNWLLTGSK---DQSCKVFDIRTMKELFTYR 303 (464)
T ss_pred cceeEEccCCc----eeEeecCCCcc--hhhhhh-hccceEEEEEEcCCCCeeEEccC---CceEEEEehhHhHHHHHhh
Confidence 87766655432 46677777662 222111 12345567899999988874333 2467788887544344343
Q ss_pred ecccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC-CEEEEEEecCCeeEEEE
Q 006375 217 PRVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI-DHLAVYEREGGLQKITT 294 (648)
Q Consensus 217 ~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~v 294 (648)
..... ....|.|-...|+.+...+ ..|+...+.. .+....++...+..|-++.+-+ .+|+....++...+.+.
T Consensus 304 ~Hkkdv~~~~WhP~~~~lftsgg~D----gsvvh~~v~~-~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 304 GHKKDVTSLTWHPLNESLFTSGGSD----GSVVHWVVGL-EEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cchhhheeeccccccccceeeccCC----CceEEEeccc-cccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 33333 2345888777665543332 2343333321 1122234444444566666655 45655555554445554
Q ss_pred EEc
Q 006375 295 YRL 297 (648)
Q Consensus 295 ~~~ 297 (648)
...
T Consensus 379 r~r 381 (464)
T KOG0284|consen 379 RNR 381 (464)
T ss_pred cCC
Confidence 433
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.56 E-value=4.7 Score=39.51 Aligned_cols=147 Identities=12% Similarity=0.065 Sum_probs=76.9
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+.++-+.-.+++|+-.+. ..+|.+|+++ |+.+.....+ .....+-|||| .|+...+.. .-.||..-.
T Consensus 189 ~~i~iGiA~~~k~imsas~-----dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTp---DVkVwE~~f 259 (420)
T KOG2096|consen 189 DIINIGIAGNAKYIMSASL-----DTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP---DVKVWEPIF 259 (420)
T ss_pred ceEEEeecCCceEEEEecC-----CCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCC---CceEEEEEe
Confidence 3444556667777664432 3589999998 6666432222 23457889999 555544422 233554333
Q ss_pred CCCC--CCcEEEEeecC-CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCC--CCceeEeeec--------ccceeee
Q 006375 159 EADQ--SNDICLYHEKD-DIYSLGLQASESKKFLFIASESKITRFVFYLDVSK--PEELRVLTPR--------VVGVDTA 225 (648)
Q Consensus 159 ~~~~--~~~~~~~~~~~-~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~--~~~~~~l~~~--------~~~~~~~ 225 (648)
+.+. .+-..+|+-.. ..-...+++|++.+.++- .+..+.-+||-.|..= ++.+..|... .......
T Consensus 260 ~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt-vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~ 338 (420)
T KOG2096|consen 260 TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT-VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLE 338 (420)
T ss_pred ccCcchhhhhhhheeccchhheeeeeeCCCcceeEE-EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEE
Confidence 3221 12233443322 122345678898888763 3444455666554421 1112222111 1123456
Q ss_pred EeecCCEEEEEec
Q 006375 226 ASHRGNHFFITRR 238 (648)
Q Consensus 226 ~s~dg~~l~~~~~ 238 (648)
.+|.|+.|+....
T Consensus 339 lsP~g~~lA~s~g 351 (420)
T KOG2096|consen 339 LSPSGDSLAVSFG 351 (420)
T ss_pred eCCCCcEEEeecC
Confidence 8999997776654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.5 Score=51.77 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=52.2
Q ss_pred ceEEEeccccc-----CCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-
Q 006375 65 EHLILDENVKA-----EGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE- 137 (648)
Q Consensus 65 ~~~lld~n~~~-----~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg- 137 (648)
.-+++|.-+.. .+| .-.+..+.+|||||+|+-+... ..|++||+.+|....- ..+....++.+||.|
T Consensus 557 ~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD-----~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD 630 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMD-----STIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGD 630 (910)
T ss_pred eEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecC-----CcEEEEeccCcceeeeEecCCcceeeEECCCCC
Confidence 34667866432 122 3478899999999999877642 4899999999987642 345556679999999
Q ss_pred eEEEEEe
Q 006375 138 ALVYITM 144 (648)
Q Consensus 138 ~l~y~~~ 144 (648)
.|+-+-.
T Consensus 631 ~LAT~Hv 637 (910)
T KOG1539|consen 631 FLATVHV 637 (910)
T ss_pred EEEEEEe
Confidence 6655443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.40 E-value=14 Score=38.08 Aligned_cols=195 Identities=14% Similarity=0.135 Sum_probs=106.8
Q ss_pred EEEeeEEeCCCCC-EEEEEEeCCCCeEEEEEEEECCCCCeeecc-----cc-CccceeEEecCC--eEEEEEeCCCCCCc
Q 006375 81 YSVGCFQVSPDNK-LVAYAEDTKGDEIYTVYVIDIETGTPVGKP-----LV-GVTASVEWAGNE--ALVYITMDEILRPD 151 (648)
Q Consensus 81 ~~~~~~~~SPDG~-~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-----~~-~~~~~~~WspDg--~l~y~~~~~~~~~~ 151 (648)
-++..+.|-|-.. .|..+-+..| +|-+||+.+.+...+. .. ...+++.|+|.+ .|+-++++..
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G----~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt---- 258 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGG----QVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT---- 258 (498)
T ss_pred cceEEEEecccCcceEEEEccCCC----cEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce----
Confidence 4677888999876 5555556656 8999999754443221 11 125668999988 6666655542
Q ss_pred eEEEEECCCCCCCcEEEEee-cCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-cee--EeeecccceeeeEe
Q 006375 152 KAWLHKLEADQSNDICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELR--VLTPRVVGVDTAAS 227 (648)
Q Consensus 152 ~l~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~--~l~~~~~~~~~~~s 227 (648)
+...++.+...+ .++.. .+..++.+..++.+.+.+++..+-+ ..-++|+.++. +.. .+... .-....+.
T Consensus 259 -iR~~D~~~~i~e--~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G---~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~N 331 (498)
T KOG4328|consen 259 -IRLQDFEGNISE--EVLSLDTDNIWFSSLDFSAESRSVLFGDNVG---NFNVIDLRTDGSEYENLRLHKK-KITSVALN 331 (498)
T ss_pred -eeeeeecchhhH--HHhhcCccceeeeeccccCCCccEEEeeccc---ceEEEEeecCCccchhhhhhhc-ccceeecC
Confidence 667777776432 23322 2345666778888888877754433 34455555443 122 22222 11234467
Q ss_pred ecCCEEEEEeccCCCCCcEEEEEeCCCCCcce--e--EecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEc
Q 006375 228 HRGNHFFITRRSDELFNSELLACPVDNTSETT--V--LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 297 (648)
Q Consensus 228 ~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~ 297 (648)
|...+++.++..+ ..+.+.|+....... . .+++...+...-|++++..++-... ...|+|++.
T Consensus 332 P~~p~~laT~s~D----~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~---D~~IRv~ds 398 (498)
T KOG4328|consen 332 PVCPWFLATASLD----QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ---DNEIRVFDS 398 (498)
T ss_pred CCCchheeecccC----cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc---CCceEEeec
Confidence 7777766655443 233445554321111 1 4445544444445666656433332 246777765
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.5 Score=42.91 Aligned_cols=132 Identities=20% Similarity=0.271 Sum_probs=79.5
Q ss_pred ceEEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee----eccccCccceeEEecCC-eE
Q 006375 65 EHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV----GKPLVGVTASVEWAGNE-AL 139 (648)
Q Consensus 65 ~~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~----~~~~~~~~~~~~WspDg-~l 139 (648)
..||+-.|.-+ ..+.|||.++++|..+ |.....|+-+.-+..=.+ ..++......+.|.|++ -+
T Consensus 93 tlvLlRiNrAA--------t~V~WsP~enkFAVgS---gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 93 TLVLLRINRAA--------TCVKWSPKENKFAVGS---GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred ceeEEEeccce--------eeEeecCcCceEEecc---CccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 34666555433 4789999999999764 332333333332221111 22445555679999999 77
Q ss_pred EEEEeCCCCCCceEEEEECCCCCCC----cEEEE-----ee-cCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCC
Q 006375 140 VYITMDEILRPDKAWLHKLEADQSN----DICLY-----HE-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP 209 (648)
Q Consensus 140 ~y~~~~~~~~~~~l~~~~l~~~~~~----~~~~~-----~~-~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~ 209 (648)
+..+.|..-+-...|+-.++...+. .++.| +- ..+.|..++.|||+|..|.+...+ +-+++.|..++
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd---s~v~~~da~~p 238 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD---STVSFVDAAGP 238 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC---CceEEeecCCC
Confidence 6666665555566777777765321 11111 11 235567788999999999886543 44677777666
Q ss_pred C
Q 006375 210 E 210 (648)
Q Consensus 210 ~ 210 (648)
.
T Consensus 239 ~ 239 (361)
T KOG1523|consen 239 S 239 (361)
T ss_pred c
Confidence 4
|
|
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=92.37 E-value=1.2 Score=46.62 Aligned_cols=118 Identities=19% Similarity=0.152 Sum_probs=72.7
Q ss_pred CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCE-EEEEccCCCCC---CChhhhhccccc
Q 006375 385 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFI-FAIAQIRGGGE---LGRQWYENGKFL 460 (648)
Q Consensus 385 ~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~-v~~~~~rG~g~---~g~~~~~~~~~~ 460 (648)
.+.++-.+ +.|-+. |.|+.||+-|--. ..+|.... .+-..|.- .++-|.|--|| .|.+-++
T Consensus 274 ~reEi~yY-FnPGD~-----KPPL~VYFSGyR~---aEGFEgy~-MMk~Lg~PfLL~~DpRleGGaFYlGs~eyE----- 338 (511)
T TIGR03712 274 KRQEFIYY-FNPGDF-----KPPLNVYFSGYRP---AEGFEGYF-MMKRLGAPFLLIGDPRLEGGAFYLGSDEYE----- 338 (511)
T ss_pred CCCeeEEe-cCCcCC-----CCCeEEeeccCcc---cCcchhHH-HHHhcCCCeEEeeccccccceeeeCcHHHH-----
Confidence 35555444 666554 5699999988322 34455322 22233544 56678885443 1332221
Q ss_pred CCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccc
Q 006375 461 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 525 (648)
Q Consensus 461 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~ 525 (648)
+-++..++...+.-..+.+.+.+.|.|||.+-|+..++.- ..+|+|..-|++++-+.
T Consensus 339 ------~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~NLGti 395 (511)
T TIGR03712 339 ------QGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVNLGTI 395 (511)
T ss_pred ------HHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccchhhh
Confidence 2344444433333235789999999999999999888864 24789999999986543
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.34 Score=42.45 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh
Q 006375 466 FTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 466 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 505 (648)
.+.+...++.+.++.. +.+|.+.|||+||.+|..++..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 3466666666666544 4899999999999988766654
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.29 E-value=15 Score=37.86 Aligned_cols=58 Identities=21% Similarity=0.155 Sum_probs=38.3
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec--cccCccceeEEecCC-eEEEEEe
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITM 144 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~WspDg-~l~y~~~ 144 (648)
.+-.+.+||||+|||..- . ...|.||+.++.+.+.. ...+...+.+|-..- .+|-.+.
T Consensus 204 eil~~avS~Dgkylatgg----~-d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~ 264 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGG----R-DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA 264 (479)
T ss_pred eeEEEEEcCCCcEEEecC----C-CceEEEecCcccchhhcccccccceeeeeeecCccceeeeec
Confidence 455789999999999752 1 35788999999987753 123344557775443 5544443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=91.78 E-value=12 Score=43.89 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=63.4
Q ss_pred eEEeCCCCCEEEEEEe--CCCCeEEEEEEEECCCCCee--eccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 85 CFQVSPDNKLVAYAED--TKGDEIYTVYVIDIETGTPV--GKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~--~~G~e~~~l~v~dl~~g~~~--~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.++|-.||+++|.+.- ..| .+-.|+|++-+ |+.. ....++....++|.|.| .|+-+.. ..++ .+|..+.-.
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~-~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~-~~VvFfErN 289 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETG-SRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDR-HDVVFFERN 289 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCC-ceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCC-cEEEEEecC
Confidence 5689999999999864 233 36789999876 4433 23456667789999999 6655443 2222 444444333
Q ss_pred CCCC-CcEEEEeecCCCeEEEEEeCCCCcEEEEEEc
Q 006375 160 ADQS-NDICLYHEKDDIYSLGLQASESKKFLFIASE 194 (648)
Q Consensus 160 ~~~~-~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~ 194 (648)
+-.- +-.+.+ .....-...+.|++|+.-|++...
T Consensus 290 GLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 290 GLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred CcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEec
Confidence 2211 111111 112223457899999999988653
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.76 E-value=13 Score=40.76 Aligned_cols=106 Identities=13% Similarity=0.218 Sum_probs=57.2
Q ss_pred EEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc---c--eeeeEeecCCEEEEEeccCCCCCcEEEEEeCC
Q 006375 179 GLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV---G--VDTAASHRGNHFFITRRSDELFNSELLACPVD 253 (648)
Q Consensus 179 ~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~---~--~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~ 253 (648)
+..+.|..++++.... +..|.+++++.++ .++..++.. | +....+|.| +|+.+.- .+..|..+|..
T Consensus 601 Dm~Vdp~~k~v~t~cQ---Drnirif~i~sgK-q~k~FKgs~~~eG~lIKv~lDPSg--iY~atSc---sdktl~~~Df~ 671 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQ---DRNIRIFDIESGK-QVKSFKGSRDHEGDLIKVILDPSG--IYLATSC---SDKTLCFVDFV 671 (1080)
T ss_pred EeeeCCCcceEEEEec---ccceEEEeccccc-eeeeecccccCCCceEEEEECCCc--cEEEEee---cCCceEEEEec
Confidence 4556677777665443 3468888999887 555554322 2 123466666 4555443 22468888876
Q ss_pred CCCcceeEecCCCCcccceEEEeCC--EEEEEEecCCeeEEEEEEcC
Q 006375 254 NTSETTVLIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~~ 298 (648)
.++-.-..+.|.+- +.++.+.+| +++ ...-+ .-|.+|.++
T Consensus 672 sgEcvA~m~GHsE~--VTG~kF~nDCkHlI-SvsgD--gCIFvW~lp 713 (1080)
T KOG1408|consen 672 SGECVAQMTGHSEA--VTGVKFLNDCKHLI-SVSGD--GCIFVWKLP 713 (1080)
T ss_pred cchhhhhhcCcchh--eeeeeecccchhhe-eecCC--ceEEEEECc
Confidence 53222114445443 455666554 433 33333 345666665
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.71 E-value=3.6 Score=41.69 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=73.2
Q ss_pred EEEEEECCCCCeee-ccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCC---CeEEEEEe
Q 006375 108 TVYVIDIETGTPVG-KPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDD---IYSLGLQA 182 (648)
Q Consensus 108 ~l~v~dl~~g~~~~-~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~ 182 (648)
.|+.||..++..+. .+..+...++.-++|| .++-.+.++ -+-.+++.+. +-...|....- .-...+.+
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd-----tl~viDlRt~--eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD-----TLKVIDLRTK--EIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC-----ceeeeecccc--cEEEEeeccccccccccceeEE
Confidence 58999988877654 2445556668899999 776543332 2556777665 33444433211 11224679
Q ss_pred CCCCcEEEEEEccccccEEEEEECCCCCceeEeee--ccc-ce-eeeEeecCCEEEEEec
Q 006375 183 SESKKFLFIASESKITRFVFYLDVSKPEELRVLTP--RVV-GV-DTAASHRGNHFFITRR 238 (648)
Q Consensus 183 s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~--~~~-~~-~~~~s~dg~~l~~~~~ 238 (648)
|||++|++..+. +..||+++..+++ ...+.. ... ++ ...|++.|..++-..+
T Consensus 396 Spd~~YvaAGS~---dgsv~iW~v~tgK-lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 396 SPDGSYVAAGSA---DGSVYIWSVFTGK-LEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred CCCCceeeeccC---CCcEEEEEccCce-EEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 999999986443 3569999999987 333322 222 22 3458888876654433
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.76 Score=46.04 Aligned_cols=120 Identities=18% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHC---------CCEEEEEccCCCCCCChhhhh
Q 006375 385 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR---------GFIFAIAQIRGGGELGRQWYE 455 (648)
Q Consensus 385 ~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~---------G~~v~~~~~rG~g~~g~~~~~ 455 (648)
.|.+|+...+.|++. +..++.--||++||-+|+-.+ |-..+..|.+- -|-|++|...|=| |.+
T Consensus 132 eGL~iHFlhvk~p~~-k~~k~v~PlLl~HGwPGsv~E--FykfIPlLT~p~~hg~~~d~~FEVI~PSlPGyg-----wSd 203 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQK-KKKKKVKPLLLLHGWPGSVRE--FYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYG-----WSD 203 (469)
T ss_pred cceeEEEEEecCCcc-ccCCcccceEEecCCCchHHH--HHhhhhhhcCccccCCccceeEEEeccCCCCcc-----cCc
Confidence 577787766666654 333333347888998876443 33333333331 3678899888533 443
Q ss_pred cccccCCCCcHhHHHHHHHHH-HHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecC
Q 006375 456 NGKFLKKKNTFTDFIACAEYL-IKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV 517 (648)
Q Consensus 456 ~~~~~~~~~~~~D~~~~~~~l-~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~ 517 (648)
+.. ..+-+.. .+..+++-| ...|+ ++..|-|+-+|..++..++.-+|+.+.+.=+..
T Consensus 204 ~~s-k~GFn~~-a~ArvmrkLMlRLg~---nkffiqGgDwGSiI~snlasLyPenV~GlHlnm 261 (469)
T KOG2565|consen 204 APS-KTGFNAA-ATARVMRKLMLRLGY---NKFFIQGGDWGSIIGSNLASLYPENVLGLHLNM 261 (469)
T ss_pred CCc-cCCccHH-HHHHHHHHHHHHhCc---ceeEeecCchHHHHHHHHHhhcchhhhHhhhcc
Confidence 211 1111222 222333333 34455 799999999999999999999999776644333
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.30 E-value=17 Score=38.00 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=94.2
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-cccc-C-ccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLV-G-VTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~~-~-~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
-.+..+...-...|||-.++ +| +|-|..++++.... ..++ + ...-+.++|-. .++-+..+. ..|.++
T Consensus 122 stvt~v~YN~~DeyiAsvs~-gG----diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~----G~Vtlw 192 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSD-GG----DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDK----GAVTLW 192 (673)
T ss_pred ceeEEEEecCCcceeEEecc-CC----cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccC----CeEEEE
Confidence 45556666667777776554 33 68888888876543 2333 2 23347788888 554444332 236677
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFIT 236 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~ 236 (648)
|+.+. ....-+.+....-..++.+||....|+++. +-+..|+++|.........|+-..+-....++++|-+|..-
T Consensus 193 Dv~g~--sp~~~~~~~HsAP~~gicfspsne~l~vsV--G~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 193 DVQGM--SPIFHASEAHSAPCRGICFSPSNEALLVSV--GYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAG 268 (673)
T ss_pred eccCC--CcccchhhhccCCcCcceecCCccceEEEe--cccceEEEeecccccccceeeecCCcceeeecCCceEEEee
Confidence 77654 222223222222234678899888887654 34578999998765523334333233345688998766543
Q ss_pred eccCCCCCcEEEEEeCCCC
Q 006375 237 RRSDELFNSELLACPVDNT 255 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~ 255 (648)
+ .+++|+.+|+...
T Consensus 269 ~-----s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 269 N-----SKGELIAYDMRST 282 (673)
T ss_pred c-----CCceEEEEecccC
Confidence 3 3579999999763
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.28 E-value=13 Score=34.99 Aligned_cols=56 Identities=23% Similarity=0.176 Sum_probs=33.3
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc-cCccceeEEecCCeEEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNEALVYIT 143 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~WspDg~l~y~~ 143 (648)
+-....|-|..++|- . |. .-.+++||++||+.... .. .+....+.|..++.++++.
T Consensus 62 VlD~~~s~Dnskf~s---~-Gg-Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sg 119 (307)
T KOG0316|consen 62 VLDAALSSDNSKFAS---C-GG-DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASG 119 (307)
T ss_pred eeecccccccccccc---C-CC-CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEec
Confidence 334566777777662 2 33 45799999999987642 11 1123447776666555543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.27 E-value=22 Score=41.60 Aligned_cols=115 Identities=11% Similarity=0.078 Sum_probs=60.1
Q ss_pred EEEeCCCCcEEEEEEccc--cccEEEEEECCCCCceeEeeecccc--eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 179 GLQASESKKFLFIASESK--ITRFVFYLDVSKPEELRVLTPRVVG--VDTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 179 ~~~~s~Dg~~l~~~~~~~--~~~~l~~~dl~~~~~~~~l~~~~~~--~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
.++|--||++++++.... +...|.++|.+ +. +........+ ....|-|.|..++..-... .. .+|....-++
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~-sd-~~IvffErNG 275 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT-SD-SDIVFFERNG 275 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceeecCCCCeEeeeeecC-CC-CcEEEEecCC
Confidence 478999999999875433 23678888877 33 2222222222 2346888887766554432 22 2565555444
Q ss_pred CCcceeEecCCCCcc-cceEEEeCCE--EEEEEecCCeeEEEEEEc
Q 006375 255 TSETTVLIPHRESVK-LQDIQLFIDH--LAVYEREGGLQKITTYRL 297 (648)
Q Consensus 255 ~~~~~~~~~~~~~~~-~~~~~~~~~~--l~~~~~~~~~~~l~v~~~ 297 (648)
.......++...+.. +..+.|..+. +++........++.+|..
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 222222344333333 6677776543 333222222334555543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.24 E-value=19 Score=37.31 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=80.1
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-c---ccCccceeEEecCC-eEEEEEeCCCCCCceEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P---LVGVTASVEWAGNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~---~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~ 155 (648)
..++++.+||-..--.|+.+.+| +|+..|++++..... . ..-.++.+.++.+. .+++... .....++-
T Consensus 235 ~~Vs~l~F~P~n~s~i~ssSyDG----tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~---~G~f~~iD 307 (498)
T KOG4328|consen 235 GPVSGLKFSPANTSQIYSSSYDG----TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN---VGNFNVID 307 (498)
T ss_pred ccccceEecCCChhheeeeccCc----eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec---ccceEEEE
Confidence 35788999998887788888778 799999998753321 1 22235668888887 6655432 11333444
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-cee-Ee--ee-cccceeeeEeecC
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELR-VL--TP-RVVGVDTAASHRG 230 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~-~l--~~-~~~~~~~~~s~dg 230 (648)
+.++.++-..+.- ++. -..++++.|-..+++++++.+.+..|| |+..-. ... .| .+ +..-...++||.|
T Consensus 308 --~R~~~s~~~~~~l-h~k-KI~sv~~NP~~p~~laT~s~D~T~kIW--D~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 308 --LRTDGSEYENLRL-HKK-KITSVALNPVCPWFLATASLDQTAKIW--DLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred --eecCCccchhhhh-hhc-ccceeecCCCCchheeecccCcceeee--ehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 4444332111111 111 233677889888888877665555555 543321 011 11 11 2222335699999
Q ss_pred CEE
Q 006375 231 NHF 233 (648)
Q Consensus 231 ~~l 233 (648)
..|
T Consensus 382 gtl 384 (498)
T KOG4328|consen 382 GTL 384 (498)
T ss_pred Cce
Confidence 984
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.13 E-value=6.4 Score=39.53 Aligned_cols=118 Identities=15% Similarity=0.090 Sum_probs=74.2
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc-CccceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV-GVTASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~-~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
+-.+..+.|++ .-.+|+... ..+|.+||+.+|........ .....+.-+|...++..... ...+.+||.
T Consensus 260 t~~Vs~V~w~d--~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gss----dr~irl~DP 329 (423)
T KOG0313|consen 260 TEPVSSVVWSD--ATVIYSVSW----DHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSS----DRHIRLWDP 329 (423)
T ss_pred ccceeeEEEcC--CCceEeecc----cceEEEEEeecccceeeeecCcceeEeecccccceeeecCC----CCceeecCC
Confidence 44678899998 557888765 46999999999987643222 23556888887755554431 234677777
Q ss_pred CCCCCCcE-EEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 159 EADQSNDI-CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 159 ~~~~~~~~-~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
.++...-. .-|.. ...|.-.+.|+|-..+++++....+. +.++|+.+.+
T Consensus 330 R~~~gs~v~~s~~g-H~nwVssvkwsp~~~~~~~S~S~D~t--~klWDvRS~k 379 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIG-HKNWVSSVKWSPTNEFQLVSGSYDNT--VKLWDVRSTK 379 (423)
T ss_pred CCCCCceeEEeeec-chhhhhheecCCCCceEEEEEecCCe--EEEEEeccCC
Confidence 76633211 11222 23466678999999999886554443 4455665543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.04 E-value=9.8 Score=41.65 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=83.0
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCe-eeccc---cCccceeEEecCC-eEEEEEeCCCCCCceEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGKPL---VGVTASVEWAGNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~-~~~~~---~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~ 155 (648)
+.-+.++||++|+.|+-.. | ..|-+.|+++++. .+... +.....+.-+||+ .+++.. +...+..
T Consensus 20 YtGG~~~~s~nG~~L~t~~---~---d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~-----rs~llrv 88 (775)
T KOG0319|consen 20 YTGGPVAWSSNGQHLYTAC---G---DRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTAS-----RSQLLRV 88 (775)
T ss_pred ecCCceeECCCCCEEEEec---C---ceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEee-----ccceEEE
Confidence 4445689999999987664 3 3688899999988 33211 1224558889999 665432 2334556
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeee--EeecCC-E
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTA--ASHRGN-H 232 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~--~s~dg~-~ 232 (648)
+.+.++.--+........|. +..+++|-| .++- ..+-...+-++|...+. .+--..+.++.... +.|+-. +
T Consensus 89 ~~L~tgk~irswKa~He~Pv--i~ma~~~~g-~LlA--tggaD~~v~VWdi~~~~-~th~fkG~gGvVssl~F~~~~~~~ 162 (775)
T KOG0319|consen 89 WSLPTGKLIRSWKAIHEAPV--ITMAFDPTG-TLLA--TGGADGRVKVWDIKNGY-CTHSFKGHGGVVSSLLFHPHWNRW 162 (775)
T ss_pred EEcccchHhHhHhhccCCCe--EEEEEcCCC-ceEE--eccccceEEEEEeeCCE-EEEEecCCCceEEEEEeCCccchh
Confidence 66766621111111112233 344677877 3332 22334667778887764 22222233343322 333322 2
Q ss_pred EEEEeccCCCCCcEEEEEeCCC
Q 006375 233 FFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
+++. ++++..+.++++..
T Consensus 163 lL~s----g~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 163 LLAS----GATDGTVRVWNLND 180 (775)
T ss_pred heee----cCCCceEEEEEccc
Confidence 3333 23456788888864
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.87 E-value=1.5 Score=45.85 Aligned_cols=124 Identities=17% Similarity=0.202 Sum_probs=63.7
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEe--cCC-eEEEEEeCCCCCCceEEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWA--GNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~Ws--pDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
.++..++|=|-++-+-...-..| +++++|.. +......+.|+ +++ .+............-|.++.
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sG----nlyly~~~--------~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~ 287 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASG----NLYLYDKE--------IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH 287 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecC----ceEEeecc--------ccccCCCCcccccCCCCeeEEeeeeccccCCccceeE
Confidence 56777788776665544455556 57777761 11111123343 455 44333221111011123333
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-cccee-eeEeecCCEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVGVD-TAASHRGNHFF 234 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-~~~~~-~~~s~dg~~l~ 234 (648)
++.+ -...+.+||||++|+..+.+ .-|.++|.++.+ +.-+.+. ..+.. ..|||||++|+
T Consensus 288 ~~~g--------------~in~f~FS~DG~~LA~VSqD---GfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGKyIv 348 (636)
T KOG2394|consen 288 IGEG--------------SINEFAFSPDGKYLATVSQD---GFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGKYIV 348 (636)
T ss_pred eccc--------------cccceeEcCCCceEEEEecC---ceEEEeeccHHH-HHHHHHhhccceEEEEEcCCccEEE
Confidence 3222 12245789999999976543 346677776654 3333332 23333 35999999654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.79 E-value=3.7 Score=43.64 Aligned_cols=171 Identities=13% Similarity=0.202 Sum_probs=77.5
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEE-EECCCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWL-HKLEAD 161 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~-~~l~~~ 161 (648)
...++.||+|+.++.. .+| .+.|+. +...+. ...+....++|++.+.++.... ...|-. .++...
T Consensus 35 p~~ls~npngr~v~V~--g~g--eY~iyt----~~~~r~-k~~G~g~~~vw~~~n~yAv~~~-----~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVC--GDG--EYEIYT----ALAWRN-KAFGSGLSFVWSSRNRYAVLES-----SSTIKIYKNFKNE 100 (443)
T ss_dssp -SEEEE-TTSSEEEEE--ETT--EEEEEE----TTTTEE-EEEEE-SEEEE-TSSEEEEE-T-----TS-EEEEETTEE-
T ss_pred CeeEEECCCCCEEEEE--cCC--EEEEEE----ccCCcc-cccCceeEEEEecCccEEEEEC-----CCeEEEEEcCccc
Confidence 5688999999999982 223 677765 111111 2233345699999777554322 233444 344322
Q ss_pred CCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEeccC
Q 006375 162 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSD 240 (648)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~~ 240 (648)
.. ..+ ..+ +...--+. |..|.+.++ ..|.++|.++++.++.+. ... ....|+++|+.+++.+..
T Consensus 101 ~~--k~i-~~~---~~~~~If~--G~LL~~~~~----~~i~~yDw~~~~~i~~i~--v~~vk~V~Ws~~g~~val~t~~- 165 (443)
T PF04053_consen 101 VV--KSI-KLP---FSVEKIFG--GNLLGVKSS----DFICFYDWETGKLIRRID--VSAVKYVIWSDDGELVALVTKD- 165 (443)
T ss_dssp TT--------S---S-EEEEE---SSSEEEEET----TEEEEE-TTT--EEEEES--S-E-EEEEE-TTSSEEEEE-S--
T ss_pred cc--eEE-cCC---cccceEEc--CcEEEEECC----CCEEEEEhhHcceeeEEe--cCCCcEEEEECCCCEEEEEeCC-
Confidence 10 111 111 11110111 766665433 259999999876223332 122 245699999999998764
Q ss_pred CCCCcEEEEEeCC------CCCcc-ee-EecCCCCcccceEEEeCCEEEEEEecC
Q 006375 241 ELFNSELLACPVD------NTSET-TV-LIPHRESVKLQDIQLFIDHLAVYEREG 287 (648)
Q Consensus 241 ~~~~~~l~~~~~~------~~~~~-~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (648)
..-|+..+.+ ..+.. .. ++.+ -...+.+..|.++ ++++...+
T Consensus 166 ---~i~il~~~~~~~~~~~~~g~e~~f~~~~E-~~~~IkSg~W~~d-~fiYtT~~ 215 (443)
T PF04053_consen 166 ---SIYILKYNLEAVAAIPEEGVEDAFELIHE-ISERIKSGCWVED-CFIYTTSN 215 (443)
T ss_dssp ---SEEEEEE-HHHHHHBTTTB-GGGEEEEEE-E-S--SEEEEETT-EEEEE-TT
T ss_pred ---eEEEEEecchhcccccccCchhceEEEEE-ecceeEEEEEEcC-EEEEEcCC
Confidence 2455555554 00111 11 3322 1335788899999 55555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.78 E-value=12 Score=41.30 Aligned_cols=198 Identities=10% Similarity=-0.018 Sum_probs=106.6
Q ss_pred CceEEEecccccCC-------CCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEe
Q 006375 64 PEHLILDENVKAEG-------RGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWA 134 (648)
Q Consensus 64 ~~~~lld~n~~~~~-------~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~Ws 134 (648)
+..++.|.|....+ .-.-++..+.|++-.-.|..+-..+| .|..||+...........+ ....+.|+
T Consensus 110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg----~vK~~DlR~~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDG----TVKCWDLRSKKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCc----eEEEEeeecccccccccccchhhhceeec
Confidence 45667787772211 11356678889888888877755444 8999999877665433222 23469999
Q ss_pred cCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC--c
Q 006375 135 GNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE--E 211 (648)
Q Consensus 135 pDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~--~ 211 (648)
|-- ..|++..+.+ -|..+||.-... -..-+..+ .+..+-..|+|++.||+-. . .+..+.++|..++. .
T Consensus 186 p~~~~~F~s~~dsG----~lqlWDlRqp~r-~~~k~~AH-~GpV~c~nwhPnr~~lATG-G--RDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 186 PGYGNKFASIHDSG----YLQLWDLRQPDR-CEKKLTAH-NGPVLCLNWHPNREWLATG-G--RDKMVKIWDMTDSRAKP 256 (839)
T ss_pred cCCCceEEEecCCc----eEEEeeccCchh-HHHHhhcc-cCceEEEeecCCCceeeec-C--CCccEEEEeccCCCccc
Confidence 976 5555554432 255667765421 11222222 2334457899998888632 2 33456666666554 1
Q ss_pred eeEeeecccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC
Q 006375 212 LRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI 277 (648)
Q Consensus 212 ~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (648)
...+..-..-....|=|+..+.+-++.- -....|.+.|+..|=.....+.+..+ .+.++.|..
T Consensus 257 ~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t~~eH~~-~vt~i~W~~ 319 (839)
T KOG0269|consen 257 KHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYATFLEHTD-SVTGIAWDS 319 (839)
T ss_pred eeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeeccccccceeeeccCc-cccceeccC
Confidence 1112111111223466665543333222 23467888888764222223333323 356677765
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.63 Score=43.41 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=55.0
Q ss_pred CCEEEEEccCCCCCCChh-hhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC----C--
Q 006375 435 GFIFAIAQIRGGGELGRQ-WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR----P-- 507 (648)
Q Consensus 435 G~~v~~~~~rG~g~~g~~-~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~----p-- 507 (648)
-..|.+|-||=..-...- -..........-.+.|+.+|.+|.+++.. +-..+.|+|||.|+.+...++.++ |
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~ 123 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEEIAGDPLR 123 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHHhcCchHH
Confidence 467888888843321110 00011111223578999999998877642 346899999999999999998874 2
Q ss_pred -CceeEEEecCCccc
Q 006375 508 -DLFKAAVAAVPFVD 521 (648)
Q Consensus 508 -~~~~a~v~~~~~~d 521 (648)
.+++|-+...++..
T Consensus 124 ~rLVAAYliG~~v~~ 138 (207)
T PF11288_consen 124 KRLVAAYLIGYPVTV 138 (207)
T ss_pred hhhheeeecCccccH
Confidence 25666666666543
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=90.40 E-value=23 Score=36.25 Aligned_cols=118 Identities=15% Similarity=0.196 Sum_probs=61.1
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCe--eeccccC-------ccceeEEecC----C--eEEEEEeC--C
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP--VGKPLVG-------VTASVEWAGN----E--ALVYITMD--E 146 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~--~~~~~~~-------~~~~~~WspD----g--~l~y~~~~--~ 146 (648)
..++|.|||+. |..++.| .|++++. .|.. ....+.. -..++++.|+ + +++|+... .
T Consensus 5 ~~~a~~pdG~l--~v~e~~G----~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 5 RSMAFLPDGRL--LVAERSG----RIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp EEEEEETTSCE--EEEETTT----EEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred eEEEEeCCCcE--EEEeCCc----eEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 36789999975 4455567 7888883 3332 1111111 1345888885 4 44444331 1
Q ss_pred CCCCceEEEEECCCCC---CCcEEEEee-cC----CCeEEEEEeCCCCcEEEEEEcccc-----------ccEEEEEECC
Q 006375 147 ILRPDKAWLHKLEADQ---SNDICLYHE-KD----DIYSLGLQASESKKFLFIASESKI-----------TRFVFYLDVS 207 (648)
Q Consensus 147 ~~~~~~l~~~~l~~~~---~~~~~~~~~-~~----~~~~~~~~~s~Dg~~l~~~~~~~~-----------~~~l~~~dl~ 207 (648)
......|.++.+..+. ...+.++.. +. ......+.+.||| +|+++..+.. ...|.+++.+
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d 156 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPD 156 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEeccc
Confidence 2233467777765441 112233322 21 2334467899999 7777654321 2478888876
Q ss_pred CC
Q 006375 208 KP 209 (648)
Q Consensus 208 ~~ 209 (648)
+.
T Consensus 157 G~ 158 (331)
T PF07995_consen 157 GS 158 (331)
T ss_dssp SS
T ss_pred Cc
Confidence 54
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.32 E-value=21 Score=41.63 Aligned_cols=121 Identities=12% Similarity=0.106 Sum_probs=69.8
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee--ccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG--KPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 161 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~--~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~ 161 (648)
.+.|--||++.|.+.-....+.-.|.|+|-+ |..-. .+..+....++|-|.| .|+-....... . +|..+.-.+-
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd-~-~IvffErNGL 276 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSD-S-DIVFFERNGL 276 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCC-C-cEEEEecCCc
Confidence 4789999999998854444434678999887 43322 2334446679999998 66655443222 2 3444332221
Q ss_pred CC-CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCC
Q 006375 162 QS-NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP 209 (648)
Q Consensus 162 ~~-~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~ 209 (648)
.- +-.+-+. .+..-...+.|..++.-|++.......+.|+++.+.+-
T Consensus 277 ~hg~f~l~~p-~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 277 RHGEFVLPFP-LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cccccccCCc-ccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 10 1111111 11111346789999988887666555566777766554
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.11 E-value=23 Score=35.80 Aligned_cols=153 Identities=8% Similarity=0.080 Sum_probs=83.9
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccC---ccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~---~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
++.||| +.+..-..|.=...|+++...+|....+. +.+ ..-.++|||.. .+|++..-+ ..+.++++
T Consensus 216 ~LdWSp----~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D----gsIrIWDi 287 (440)
T KOG0302|consen 216 GLDWSP----IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD----GSIRIWDI 287 (440)
T ss_pred eeeccc----ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC----ceEEEEEe
Confidence 567888 22222233554668999999988766432 211 13359999998 777766422 23666777
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC---ceeEeeecccce-eeeEeecCCEEE
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE---ELRVLTPRVVGV-DTAASHRGNHFF 234 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~---~~~~l~~~~~~~-~~~~s~dg~~l~ 234 (648)
..++.+..+.. .....-.--++|+.+-..|+. ..+...+-++||..-+ ++..+.-....+ ...|.|....++
T Consensus 288 Rs~~~~~~~~~-kAh~sDVNVISWnr~~~lLas---G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 288 RSGPKKAAVST-KAHNSDVNVISWNRREPLLAS---GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred cCCCccceeEe-eccCCceeeEEccCCcceeee---cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceE
Confidence 77654444333 332222334678877663332 2233456667776543 122222222222 245888777766
Q ss_pred EEeccCCCCCcEEEEEeCC
Q 006375 235 ITRRSDELFNSELLACPVD 253 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~ 253 (648)
.++..+ -+|...|++
T Consensus 364 aasg~D----~QitiWDls 378 (440)
T KOG0302|consen 364 AASGED----NQITIWDLS 378 (440)
T ss_pred EeccCC----CcEEEEEee
Confidence 665542 256666653
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.04 E-value=4.3 Score=44.53 Aligned_cols=117 Identities=12% Similarity=0.108 Sum_probs=75.1
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee--ecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV--GKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~--~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
++..++|||--...-++...+| .|.+||+.-...- ..+ -.+....+.|+|++ +|+- . +|...+.+++
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG----~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lAT-G----GRDK~vkiWd 248 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSG----YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLAT-G----GRDKMVKIWD 248 (839)
T ss_pred hhhceeeccCCCceEEEecCCc----eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeee-c----CCCccEEEEe
Confidence 5677888886554445555556 7888898653321 111 23445568899988 6643 2 3445577777
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCC
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP 209 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~ 209 (648)
.+++....+.......+ ..-+.|-|+.++.+.++.-.....|+++|+..+
T Consensus 249 ~t~~~~~~~~tInTiap--v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAP--VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred ccCCCccceeEEeecce--eeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 87765444443333212 235789999998887777777889999998765
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=89.91 E-value=14 Score=40.63 Aligned_cols=162 Identities=13% Similarity=-0.011 Sum_probs=85.9
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC-ccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
..+..+.+|+||+.+|+... . ...+++.... +.... ...+ ....++|.++|+++-. .+ +.+.+|.+..-.
T Consensus 343 ~~~~s~avS~~g~~~A~~~~---~-~~~l~~~~~g-~~~~~-~~~g~~Lt~PS~d~~g~vWtv-~~--g~~~~vv~~~~~ 413 (573)
T PRK13614 343 LGPASPAESPVSQTVAFLNG---S-RTTLYTVSPG-QPARA-LTSGSTLTRPSFSPQDWVWTA-GP--GGNGRIVAYRPT 413 (573)
T ss_pred ccccceeecCCCceEEEecC---C-CcEEEEecCC-Cccee-eecCCCccCCcccCCCCEEEe-eC--CCCceEEEEecC
Confidence 45678899999999999732 2 3477776652 32222 2222 2455889888855533 22 222345554422
Q ss_pred -CCCCC--c--EEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEEC---CCCCceeEeeec-c-----cceeee
Q 006375 160 -ADQSN--D--ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV---SKPEELRVLTPR-V-----VGVDTA 225 (648)
Q Consensus 160 -~~~~~--~--~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl---~~~~~~~~l~~~-~-----~~~~~~ 225 (648)
++... . .......+..-...+..|+||-++++.....+...|++.-+ ..+. ++.|+.. . ......
T Consensus 414 g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~-P~~L~~~~~~~~~~~~~sl~ 492 (573)
T PRK13614 414 GVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGT-PRELTAPITLAADSDADTGA 492 (573)
T ss_pred CCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCC-eEEccCceecccCCCcceeE
Confidence 11100 0 11111111222557899999999888776555556776433 2333 3444321 1 123345
Q ss_pred EeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 226 ASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 226 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
|..++. |+..+... ..+..++++.+..
T Consensus 493 W~~~~s-l~V~~~~~-~~~~~~~~v~v~~ 519 (573)
T PRK13614 493 WVGDST-VVVTKASA-TSNVVPELLSVDA 519 (573)
T ss_pred EcCCCE-EEEEeccC-CCcceEEEEEeCC
Confidence 776665 66665432 3455667777743
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=89.73 E-value=5.9 Score=31.50 Aligned_cols=72 Identities=7% Similarity=0.065 Sum_probs=42.5
Q ss_pred eEEecC-CeEEEEEeCC-------------CCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccc
Q 006375 131 VEWAGN-EALVYITMDE-------------ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK 196 (648)
Q Consensus 131 ~~WspD-g~l~y~~~~~-------------~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~ 196 (648)
+.-.+| |.|||+-... .....+|++++..++ +-.++.+. -.+.-+++.|+|++++++.- .
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~--~~~vl~~~--L~fpNGVals~d~~~vlv~E--t 76 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTK--ETTVLLDG--LYFPNGVALSPDESFVLVAE--T 76 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTT--EEEEEEEE--ESSEEEEEE-TTSSEEEEEE--G
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCC--eEEEehhC--CCccCeEEEcCCCCEEEEEe--c
Confidence 556677 4777765421 123467999999887 33344433 24666899999999998743 3
Q ss_pred cccEEEEEECCC
Q 006375 197 ITRFVFYLDVSK 208 (648)
Q Consensus 197 ~~~~l~~~dl~~ 208 (648)
...+|..+-+++
T Consensus 77 ~~~Ri~rywl~G 88 (89)
T PF03088_consen 77 GRYRILRYWLKG 88 (89)
T ss_dssp GGTEEEEEESSS
T ss_pred cCceEEEEEEeC
Confidence 446676666654
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.71 E-value=17 Score=39.43 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=39.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCC-eEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALV 140 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg-~l~ 140 (648)
.+..+.+-|||..|..+. | ..++++|+..|..+..- -.+....++||.|| .++
T Consensus 14 ci~d~afkPDGsqL~lAA---g---~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---G---SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFA 69 (1081)
T ss_pred chheeEECCCCceEEEec---C---CEEEEEeCCCcccccccccccceEEEEEEccCCceec
Confidence 667889999999998875 3 38999999988876421 12334569999999 554
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.5 Score=42.21 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCC
Q 006375 467 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP 507 (648)
Q Consensus 467 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p 507 (648)
..+...++....+ ....+|.++|||+||.+|..++.+..
T Consensus 12 ~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 12 NLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred HHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3444444444332 24579999999999999988777653
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.43 E-value=4.6 Score=39.13 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=76.7
Q ss_pred CCCceEEEecccccCCCCc---EEEeeEEeCCC---CCEEEEEEeCCCCeEEEEEEEECCCCCeeec---cccCccceeE
Q 006375 62 APPEHLILDENVKAEGRGF---YSVGCFQVSPD---NKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLVGVTASVE 132 (648)
Q Consensus 62 ~~~~~~lld~n~~~~~~~~---~~~~~~~~SPD---G~~la~~~~~~G~e~~~l~v~dl~~g~~~~~---~~~~~~~~~~ 132 (648)
.+...-+.|.|++.+...+ -.+..-.|||= .-+||... ...+|++.|+++|.-... .-.++ ..+.
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gt-----r~~~VrLCDi~SGs~sH~LsGHr~~v-laV~ 195 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGT-----RDVQVRLCDIASGSFSHTLSGHRDGV-LAVE 195 (397)
T ss_pred ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEec-----CCCcEEEEeccCCcceeeeccccCce-EEEE
Confidence 3455677999998753221 12344567773 34455433 246899999999985432 12233 4599
Q ss_pred EecCC-eEEEEEeCCCCCCceEEEEECCCC--------CCCcEEEEeec--CCCeEEEEEeCCCCcEEEEEEccccccEE
Q 006375 133 WAGNE-ALVYITMDEILRPDKAWLHKLEAD--------QSNDICLYHEK--DDIYSLGLQASESKKFLFIASESKITRFV 201 (648)
Q Consensus 133 WspDg-~l~y~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~~--~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 201 (648)
|+|.. +++++..-+ ...++|-++-.++ +.+...+.+.. ...-+.+.+|+.||++++. ....+++
T Consensus 196 Wsp~~e~vLatgsaD--g~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~---~gtd~r~ 270 (397)
T KOG4283|consen 196 WSPSSEWVLATGSAD--GAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS---CGTDDRI 270 (397)
T ss_pred eccCceeEEEecCCC--ceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh---ccCccce
Confidence 99999 999987532 2223332221111 10111111111 1122457899999999863 3344566
Q ss_pred EEEECCCCC
Q 006375 202 FYLDVSKPE 210 (648)
Q Consensus 202 ~~~dl~~~~ 210 (648)
.+++...+.
T Consensus 271 r~wn~~~G~ 279 (397)
T KOG4283|consen 271 RVWNMESGR 279 (397)
T ss_pred EEeecccCc
Confidence 666666665
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=89.33 E-value=7.2 Score=40.52 Aligned_cols=128 Identities=14% Similarity=0.160 Sum_probs=58.5
Q ss_pred EEEEEEECCCCCeeec-ccc--C-ccceeEEe--cCCeEEEEEeCCCCCCceEEEEEC-CCCCCCcEEEEeecC------
Q 006375 107 YTVYVIDIETGTPVGK-PLV--G-VTASVEWA--GNEALVYITMDEILRPDKAWLHKL-EADQSNDICLYHEKD------ 173 (648)
Q Consensus 107 ~~l~v~dl~~g~~~~~-~~~--~-~~~~~~Ws--pDg~l~y~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~------ 173 (648)
.+|.|||+.+.+.++. .+. + .-..+.|. |+..--|+... -...||++-- ..+.=+.+.+.+-+.
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a---Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA---LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE-----EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe---ccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 5899999999887753 222 2 22335554 55533344431 2334554322 222111112222111
Q ss_pred ------------CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-ccc------------------c-
Q 006375 174 ------------DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVV------------------G- 221 (648)
Q Consensus 174 ------------~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~------------------~- 221 (648)
+....++..|.|.|+|+++.- ...+|..+|++++..++++-. ... +
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W--~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNW--LHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEET--TTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcc--cCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 234567889999999998543 456888999988763333221 000 1
Q ss_pred eeeeEeecCCEEEEEecc
Q 006375 222 VDTAASHRGNHFFITRRS 239 (648)
Q Consensus 222 ~~~~~s~dg~~l~~~~~~ 239 (648)
.-.++|-||++||+++..
T Consensus 377 qMvqlS~DGkRlYvTnSL 394 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVTNSL 394 (461)
T ss_dssp --EEE-TTSSEEEEE---
T ss_pred CeEEEccCCeEEEEEeec
Confidence 124589999999988753
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=89.28 E-value=19 Score=39.58 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=59.6
Q ss_pred EEEeCCCCcEEEEEEc-cccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC---
Q 006375 179 GLQASESKKFLFIASE-SKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDN--- 254 (648)
Q Consensus 179 ~~~~s~Dg~~l~~~~~-~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~--- 254 (648)
.+.+++||+++++++. +.....+..++..... ..... +....+ .+.++|+..++ + ..++.++|..+
T Consensus 239 ~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvf-ni~~ie-a~vkdGK~~~V--~-----gn~V~VID~~t~~~ 308 (635)
T PRK02888 239 NVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVF-NIARIE-EAVKAGKFKTI--G-----GSKVPVVDGRKAAN 308 (635)
T ss_pred cceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEE-chHHHH-HhhhCCCEEEE--C-----CCEEEEEECCcccc
Confidence 4578999999998863 2334556666654433 22111 111111 24567886665 1 13688888765
Q ss_pred -CCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 255 -TSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 255 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
.......++.... ..++..++|+-+++......+.+.|+++..
T Consensus 309 ~~~~v~~yIPVGKs--PHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 309 AGSALTRYVPVPKN--PHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred CCcceEEEEECCCC--ccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 1112224444332 445555555555555555567888888863
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.02 E-value=8.2 Score=40.61 Aligned_cols=86 Identities=10% Similarity=0.018 Sum_probs=52.4
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc-CccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV-GVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~-~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
-...|||....|+ .|+|.....|||-.+......... -...+++|.|| .+|.... |+.
T Consensus 190 L~~~W~~~s~lI~-----sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S-----------~nt---- 248 (737)
T KOG1524|consen 190 LSLSWSTQSNIIA-----SGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWS-----------YNT---- 248 (737)
T ss_pred EEeecCcccccee-----ecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeee-----------eee----
Confidence 3567888887776 467789999999765433322222 23567999999 4443322 110
Q ss_pred CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEc
Q 006375 163 SNDICLYHEKDDIYSLGLQASESKKFLFIASE 194 (648)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~ 194 (648)
+-++.+..+..+.++||+||..+.....
T Consensus 249 ----~R~~~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 249 ----ARFSSPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred ----eeecCCCccceEEEEEcCCCceeecccc
Confidence 1133333344557899999999876543
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=88.98 E-value=6.3 Score=31.32 Aligned_cols=53 Identities=17% Similarity=0.083 Sum_probs=36.1
Q ss_pred cccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 197 ITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 197 ~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
.+.+|+.+|..+++ .+.+..+... .-..+++|++.|++.-.. ..+|.++-+++
T Consensus 35 ~~GRll~ydp~t~~-~~vl~~~L~fpNGVals~d~~~vlv~Et~----~~Ri~rywl~G 88 (89)
T PF03088_consen 35 PTGRLLRYDPSTKE-TTVLLDGLYFPNGVALSPDESFVLVAETG----RYRILRYWLKG 88 (89)
T ss_dssp --EEEEEEETTTTE-EEEEEEEESSEEEEEE-TTSSEEEEEEGG----GTEEEEEESSS
T ss_pred CCcCEEEEECCCCe-EEEehhCCCccCeEEEcCCCCEEEEEecc----CceEEEEEEeC
Confidence 34689999999987 6666655432 224589999988777553 36888887765
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.74 E-value=11 Score=35.55 Aligned_cols=121 Identities=13% Similarity=0.115 Sum_probs=62.3
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCe----EEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCCCCCCceE--E
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDE----IYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKA--W 154 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e----~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l--~ 154 (648)
++..-.++||||+.+=++...|.+ ...||.+-+...-.+...--++..+++|+-|- .+||+-. -++.| |
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs----ln~~V~a~ 185 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDS----LNYEVDAY 185 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEcc----CceEEeee
Confidence 444557899999966555544421 12455554433222211122345569999888 7766532 23455 6
Q ss_pred EEECCCCCC-CcEEEEeecCCCeEEEEEeCCCCcE------EEEEEccccccEEEEEECCCCC
Q 006375 155 LHKLEADQS-NDICLYHEKDDIYSLGLQASESKKF------LFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 155 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~s~Dg~~------l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
-++..+++. ....+|.-...+-+ -..-|||-- |++.. -....++.+|..+++
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~--e~~~PDGm~ID~eG~L~Va~--~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPF--ESLEPDGMTIDTEGNLYVAT--FNGGTVQKVDPTTGK 244 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCc--CCCCCCcceEccCCcEEEEE--ecCcEEEEECCCCCc
Confidence 666777643 33445432211100 012344421 22222 234678888988887
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.66 E-value=3.4 Score=44.89 Aligned_cols=134 Identities=10% Similarity=0.111 Sum_probs=74.0
Q ss_pred CCceEEEecccccCCC----CcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCc--cceeEEecC
Q 006375 63 PPEHLILDENVKAEGR----GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV--TASVEWAGN 136 (648)
Q Consensus 63 ~~~~~lld~n~~~~~~----~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~--~~~~~WspD 136 (648)
|-..||+|+..-...| ..-.+..++|||+|||+|-..- | ....+.||+++....+....+.. ...++|+|-
T Consensus 57 GCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEc--G-~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~ 133 (1080)
T KOG1408|consen 57 GCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGEC--G-RTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPG 133 (1080)
T ss_pred CcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEeccc--C-CCccceeeeeccccchhhhhhccccceeeeecCC
Confidence 4567888886643321 1236788999999999986543 2 24578999999877654333332 345889999
Q ss_pred C-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCC
Q 006375 137 E-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 208 (648)
Q Consensus 137 g-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~ 208 (648)
+ ++.-+...-.. --.+|.++.....+ ...+ ..-...+++|.||.|.+-..+++ -.+|.++...
T Consensus 134 ~kyvvSVGsQHDM-IVnv~dWr~N~~~a-snki-----ss~Vsav~fsEdgSYfvT~gnrH--vk~wyl~~~~ 197 (1080)
T KOG1408|consen 134 NKYVVSVGSQHDM-IVNVNDWRVNSSGA-SNKI-----SSVVSAVAFSEDGSYFVTSGNRH--VKLWYLQIQS 197 (1080)
T ss_pred CcEEEeeccccce-EEEhhhhhhccccc-cccc-----ceeEEEEEEccCCceeeeeeeee--EEEEEeeccc
Confidence 9 66544332110 11122222211111 1111 11223467899999876443322 3455555443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.47 E-value=6.8 Score=41.76 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=74.0
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-ec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|.-+|+|||-....+| ...|.|..|.-+... +. ...+....+.|.|-. +++..+.. .|..++|
T Consensus 523 ~i~~vtWHrkGDYlatV~~~~~--~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~------~vRiYdL 594 (733)
T KOG0650|consen 523 SIRQVTWHRKGDYLATVMPDSG--NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR------SVRIYDL 594 (733)
T ss_pred ccceeeeecCCceEEEeccCCC--cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc------ceEEEeh
Confidence 4678899999999999887666 567888888655433 11 223444558899998 77766542 3777887
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCC
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP 209 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~ 209 (648)
.......+ +. ....|....+.+|.|..|++.+.. +.+..+|++-.
T Consensus 595 ~kqelvKk-L~--tg~kwiS~msihp~GDnli~gs~d---~k~~WfDldls 639 (733)
T KOG0650|consen 595 SKQELVKK-LL--TGSKWISSMSIHPNGDNLILGSYD---KKMCWFDLDLS 639 (733)
T ss_pred hHHHHHHH-Hh--cCCeeeeeeeecCCCCeEEEecCC---CeeEEEEcccC
Confidence 65311111 11 123455567889999999876543 45666776654
|
|
| >COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.46 E-value=1.4 Score=46.27 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=66.2
Q ss_pred CCCCcEEEEecCCCCCCCCCCCc-------------h----hHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCc
Q 006375 403 DGSDPLLLYGYGSYEICNDPAFN-------------S----SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNT 465 (648)
Q Consensus 403 ~~~~P~vl~~hGg~~~~~~~~~~-------------~----~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~ 465 (648)
..+.|+|+++-||+|.+....+. + .--.|.+. -.++.+|.+-+.||.+.- ...........
T Consensus 98 p~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a~-~~e~~~d~~~~ 175 (498)
T COG2939 98 PANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRAL-GDEKKKDFEGA 175 (498)
T ss_pred CCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCccccc-ccccccchhcc
Confidence 35689999999998765433221 1 11245544 457778877666666541 11111222234
Q ss_pred HhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHH----HHHHHHhh--CCC---ceeEEEecCC-ccccc
Q 006375 466 FTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGL----LIGAVLNM--RPD---LFKAAVAAVP-FVDVL 523 (648)
Q Consensus 466 ~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~----l~~~~~~~--~p~---~~~a~v~~~~-~~d~~ 523 (648)
-+|+....+.+.+. ..-.-.+..|+|.|+||. +|..+..+ .+. ++..+...++ .+|.+
T Consensus 176 ~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssvligng~~t~Pl 246 (498)
T COG2939 176 GKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVLIGNGLWTDPL 246 (498)
T ss_pred chhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeeeeecCCcccChh
Confidence 46777766655443 111225899999999998 34444443 122 3445555555 44443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=88.31 E-value=26 Score=36.43 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=53.0
Q ss_pred ceeEEecCCeEEEEEeCCCCCCceEEEE-ECCCCCC---CcEEEEeecCC------CeEEEEEeCCCCcEEEEEEccc--
Q 006375 129 ASVEWAGNEALVYITMDEILRPDKAWLH-KLEADQS---NDICLYHEKDD------IYSLGLQASESKKFLFIASESK-- 196 (648)
Q Consensus 129 ~~~~WspDg~l~y~~~~~~~~~~~l~~~-~l~~~~~---~~~~~~~~~~~------~~~~~~~~s~Dg~~l~~~~~~~-- 196 (648)
.+++|.++| +|++. ..+|+++ +.+.+.. +.+++++.-.. ....++.+.|||+ |+++..+.
T Consensus 75 ~Gi~~~~~G-lyV~~------~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~ 146 (367)
T TIGR02604 75 TGLAVAVGG-VYVAT------PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLA 146 (367)
T ss_pred cceeEecCC-EEEeC------CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCC
Confidence 458898998 55432 1247766 3332211 22334432111 2233678999995 55543321
Q ss_pred ---------------cccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEec
Q 006375 197 ---------------ITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRR 238 (648)
Q Consensus 197 ---------------~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~ 238 (648)
....+++++.++++ .+.+.....+ ....|+++|+ ++++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 147 SKVTRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred ceeccCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCC-EEEEcc
Confidence 01368888888876 5555543322 2245778775 555544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.23 E-value=36 Score=35.56 Aligned_cols=131 Identities=12% Similarity=-0.004 Sum_probs=79.6
Q ss_pred CceEEEeccccc----CCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc---cCccceeEEecC
Q 006375 64 PEHLILDENVKA----EGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---VGVTASVEWAGN 136 (648)
Q Consensus 64 ~~~~lld~n~~~----~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~---~~~~~~~~WspD 136 (648)
+..-+||.++.. -..-...+....++|+++.++.+.+. ...+.+||+.++.. ...+ .+.....+|+|-
T Consensus 90 G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD----d~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~ 164 (487)
T KOG0310|consen 90 GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD----DKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPA 164 (487)
T ss_pred CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC----CceEEEEEcCCcEE-EEEecCCcceeEeeccccC
Confidence 445678876621 11124566778999999988876543 34788888888775 3233 233456889998
Q ss_pred C-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 137 E-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 137 g-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
. .+++++ .....|..|++.+.. ....-+... .-.-.+-.-|.|..|+-. +.+.+-++|+.+|.
T Consensus 165 ~~hivvtG----sYDg~vrl~DtR~~~-~~v~elnhg--~pVe~vl~lpsgs~iasA----gGn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 165 NDHIVVTG----SYDGKVRLWDTRSLT-SRVVELNHG--CPVESVLALPSGSLIASA----GGNSVKVWDLTTGG 228 (487)
T ss_pred CCeEEEec----CCCceEEEEEeccCC-ceeEEecCC--CceeeEEEcCCCCEEEEc----CCCeEEEEEecCCc
Confidence 8 888875 334457788877652 222222221 112234456777665422 35778899998664
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.03 E-value=37 Score=35.50 Aligned_cols=245 Identities=13% Similarity=0.078 Sum_probs=128.7
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-ccc-CccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~-~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
......|+|..+.++..... ++.+.+......... ... ..-.+.+-++++ .+|....+ ...+..++..+
T Consensus 34 ~~v~~~~~g~~~~v~~~~~~----~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~----~~~v~vid~~~ 105 (381)
T COG3391 34 GGVAVNPDGTQVYVANSGSN----DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGD----SNTVSVIDTAT 105 (381)
T ss_pred ceeEEcCccCEEEEEeecCc----eeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCC----CCeEEEEcCcc
Confidence 35678999988777765332 566666553222221 112 123457778888 66554432 23466666444
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeE-eeecccceeeeEeecCCEEEEEecc
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV-LTPRVVGVDTAASHRGNHFFITRRS 239 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~-l~~~~~~~~~~~s~dg~~l~~~~~~ 239 (648)
. +.+....-...-.++.+++|++++++.......+.++++|..+.+ ... +..........++|+|..+|....
T Consensus 106 ~----~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-~~~~~~vG~~P~~~a~~p~g~~vyv~~~- 179 (381)
T COG3391 106 N----TVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-VTATIPVGNTPTGVAVDPDGNKVYVTNS- 179 (381)
T ss_pred c----ceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe-EEEEEecCCCcceEEECCCCCeEEEEec-
Confidence 3 111111111233467899999999886443357889999998876 222 222222234558999998776652
Q ss_pred CCCCCcEEEEEeCCCCCccee----EecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeec
Q 006375 240 DELFNSELLACPVDNTSETTV----LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEF 315 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~ 315 (648)
....|..++.+.....+. .+..........+..++.++++....+....+..++... .... ....
T Consensus 180 ---~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~--~~v~------~~~~ 248 (381)
T COG3391 180 ---DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT--GNVT------ATDL 248 (381)
T ss_pred ---CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC--ceEE------Eecc
Confidence 235788888654211100 122222212233444556666665554334566666552 2211 1101
Q ss_pred CCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 316 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+.....-.+...++++..+++..+. ...++..|..+.+
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~~ 286 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDGATDR 286 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEecC---CCeEEEEeCCCCc
Confidence 1111001124456777755444333 7788888888776
|
|
| >PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children | Back alignment and domain information |
|---|
Probab=87.94 E-value=2.5 Score=41.41 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC-ceeEEEecC
Q 006375 470 IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAV 517 (648)
Q Consensus 470 ~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~~~a~v~~~ 517 (648)
..+.+-|....... +-+-++|+|.||.+.=+++.+.|+ .++-.|...
T Consensus 66 ~~vc~~l~~~p~L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlg 113 (279)
T PF02089_consen 66 EQVCEQLANDPELA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLG 113 (279)
T ss_dssp HHHHHHHHH-GGGT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES
T ss_pred HHHHHHHhhChhhh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEec
Confidence 33444444433222 579999999999988788877654 466666543
|
Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A. |
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=87.90 E-value=33 Score=34.74 Aligned_cols=190 Identities=17% Similarity=0.126 Sum_probs=106.1
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCe-----------------------ee-ccccC---ccceeEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-----------------------VG-KPLVG---VTASVEW 133 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~-----------------------~~-~~~~~---~~~~~~W 133 (648)
-.+..++..+||.+++= |+-...|.+|+.++.+. .+ .++.+ ....+.|
T Consensus 194 ~~V~sVsv~~sgtr~~S-----gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCS-----GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred cceeEEEecCCCCeEEe-----ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 46678888999998763 33346788887322110 01 12222 2566999
Q ss_pred ecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC---
Q 006375 134 AGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE--- 210 (648)
Q Consensus 134 spDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~--- 210 (648)
++ ...+|+..- .+.|..+|+.+++..+. +.. ..-+..+..+|..+.|+..+ ....|.++|..++.
T Consensus 269 ~d-~~v~yS~Sw----DHTIk~WDletg~~~~~-~~~---~ksl~~i~~~~~~~Ll~~gs---sdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 269 SD-ATVIYSVSW----DHTIKVWDLETGGLKST-LTT---NKSLNCISYSPLSKLLASGS---SDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cC-CCceEeecc----cceEEEEEeecccceee-eec---CcceeEeecccccceeeecC---CCCceeecCCCCCCCce
Confidence 87 544455432 24488888888743332 221 23344677888776665322 34678888888776
Q ss_pred ceeEeeeccccee-eeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee-EecCCCCcccceEEEeCCEEEEEEecCC
Q 006375 211 ELRVLTPRVVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFIDHLAVYEREGG 288 (648)
Q Consensus 211 ~~~~l~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (648)
....+......+. ..|+|-..+.+.....+ ..+...|+......-. +..+ +..+..+.|.....++....+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D----~t~klWDvRS~k~plydI~~h--~DKvl~vdW~~~~~IvSGGaD- 409 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD----NTVKLWDVRSTKAPLYDIAGH--NDKVLSVDWNEGGLIVSGGAD- 409 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecC----CeEEEEEeccCCCcceeeccC--CceEEEEeccCCceEEeccCc-
Confidence 1223334444433 45899877665554443 3566667765321211 3333 334677888777555554433
Q ss_pred eeEEEEE
Q 006375 289 LQKITTY 295 (648)
Q Consensus 289 ~~~l~v~ 295 (648)
..|+++
T Consensus 410 -~~l~i~ 415 (423)
T KOG0313|consen 410 -NKLRIF 415 (423)
T ss_pred -ceEEEe
Confidence 345544
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.81 E-value=1.8 Score=49.40 Aligned_cols=138 Identities=14% Similarity=0.134 Sum_probs=78.4
Q ss_pred CCceEEEecccccCCCC------cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec---ccc-CccceeE
Q 006375 63 PPEHLILDENVKAEGRG------FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PLV-GVTASVE 132 (648)
Q Consensus 63 ~~~~~lld~n~~~~~~~------~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~---~~~-~~~~~~~ 132 (648)
+++-.|.|.|......- .-.+..++|.-.=..|.-+ ++....+.|||+...++... ... ...+.++
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS----~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~ 213 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILAS----GSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLA 213 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhc----cCCCCCceeccccCCCcccccccCCCccceeeee
Confidence 46778899888653211 1123334444333333322 22233678899988765532 122 2256799
Q ss_pred EecCC--eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 133 WAGNE--ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 133 WspDg--~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
|.||+ +|+..+.++..-..++|-.+..+ ....+++.+ .+-.+...|.+.+..+++++. -+++++.++.++++
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~as---sP~k~~~~H-~~GilslsWc~~D~~lllSsg--kD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGH-QRGILSLSWCPQDPRLLLSSG--KDNRIICWNPNTGE 287 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccC---Cchhhhccc-ccceeeeccCCCCchhhhccc--CCCCeeEecCCCce
Confidence 99999 66555544433334444333333 234455444 344567889998766666544 45788899988876
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.69 E-value=1.2 Score=44.16 Aligned_cols=131 Identities=12% Similarity=0.153 Sum_probs=74.4
Q ss_pred CCceEEEecccccCCCC---cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCe-eec--cccCccceeEEecC
Q 006375 63 PPEHLILDENVKAEGRG---FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGK--PLVGVTASVEWAGN 136 (648)
Q Consensus 63 ~~~~~lld~n~~~~~~~---~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~-~~~--~~~~~~~~~~WspD 136 (648)
++.-+|+|..+-..-+. ...-..+.|+|.+ .-|+. ++|.++||.+|+..-+. +.. .-..+...+.|||-
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea--fnF~~---a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNPEA--FNFVA---ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT 283 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCccc--cceee---ccccccceehhhhhhcccchhhcccceeEEEeccCCC
Confidence 34568888766443211 2233578999932 33443 67789999999865332 211 11123456889999
Q ss_pred C-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEEC
Q 006375 137 E-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV 206 (648)
Q Consensus 137 g-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl 206 (648)
| .|+-.++|. .|.++....+.+ .-+|....=...+.+.||-|.+||+-.+ +..+-+||...+
T Consensus 284 G~EfvsgsyDk-----sIRIf~~~~~~S--RdiYhtkRMq~V~~Vk~S~Dskyi~SGS-dd~nvRlWka~A 346 (433)
T KOG0268|consen 284 GQEFVSGSYDK-----SIRIFPVNHGHS--RDIYHTKRMQHVFCVKYSMDSKYIISGS-DDGNVRLWKAKA 346 (433)
T ss_pred cchhccccccc-----eEEEeecCCCcc--hhhhhHhhhheeeEEEEeccccEEEecC-CCcceeeeecch
Confidence 9 776554443 355666655533 2344333223345789999999987332 223345555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.62 E-value=27 Score=38.31 Aligned_cols=239 Identities=12% Similarity=0.116 Sum_probs=113.3
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCc-cceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~-~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
...+.+++|.-||.+|+..-.. | .|.|=.+++.++.-..+.+. ...+.||+|. .++|...+ .+..+++
T Consensus 115 KSvV~SmsWn~dG~kIcIvYeD-G----avIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~an-----ge~hlyd 184 (1189)
T KOG2041|consen 115 KSVVVSMSWNLDGTKICIVYED-G----AVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKAN-----GETHLYD 184 (1189)
T ss_pred ccEEEEEEEcCCCcEEEEEEcc-C----CEEEEeeccceecchhcchheccceeecccHHHHHhhhcC-----CcEEEec
Confidence 3567899999999999988643 3 34455555555544344443 3469999999 66665432 1222222
Q ss_pred CCCCCC----CcEEE-----Eee-----cCCCeEEE--EEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc
Q 006375 158 LEADQS----NDICL-----YHE-----KDDIYSLG--LQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG 221 (648)
Q Consensus 158 l~~~~~----~~~~~-----~~~-----~~~~~~~~--~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~ 221 (648)
..+.-. .+-.+ ++. ..-.|+.+ ...-||.-.+++.-. .+...|.+ ...+.. +..+..+...
T Consensus 185 nqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~-nGr~QiMR-~eND~~-Pvv~dtgm~~ 261 (1189)
T KOG2041|consen 185 NQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA-NGRMQIMR-SENDPE-PVVVDTGMKI 261 (1189)
T ss_pred ccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc-Cceehhhh-hcCCCC-CeEEecccEe
Confidence 221100 01100 000 00001111 112346555554322 22222221 122333 5555444444
Q ss_pred eeeeEeecCCEEEEEeccCCCCC----cEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEc
Q 006375 222 VDTAASHRGNHFFITRRSDELFN----SELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 297 (648)
Q Consensus 222 ~~~~~s~dg~~l~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~ 297 (648)
+...|+|+|..|++..+..++.. .++.-+..=+ ...-.+ .-++..|.+++|.+.++-+....++ .|++-++
T Consensus 262 vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G--~i~gtl-kvpg~~It~lsWEg~gLriA~Avds--fiyfanI 336 (1189)
T KOG2041|consen 262 VGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG--HIVGTL-KVPGSCITGLSWEGTGLRIAIAVDS--FIYFANI 336 (1189)
T ss_pred ecceecCCCcEEEEccCcccccCccccceEEEeccch--hheEEE-ecCCceeeeeEEcCCceEEEEEecc--eEEEEee
Confidence 55679999998888766532211 1222222111 110011 1123346777777766544333332 3443333
Q ss_pred CCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCE-EEEEECCCCcEEEE
Q 006375 298 PAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPS-VYDYDMDMGISVLK 360 (648)
Q Consensus 298 ~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~-~~~~d~~~~~~~~~ 360 (648)
.. .+ -+.+=..++.|.++....|-- +.-||.++.+..++
T Consensus 337 RP-------------------~y-----kWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK 376 (1189)
T KOG2041|consen 337 RP-------------------EY-----KWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK 376 (1189)
T ss_pred cc-------------------cc-----eEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh
Confidence 21 01 111123467888888877754 44577777664443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.51 E-value=23 Score=34.60 Aligned_cols=75 Identities=11% Similarity=0.020 Sum_probs=48.1
Q ss_pred EEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceee---eEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 179 GLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDT---AASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 179 ~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
++.++|--+..++- .++....-+++|..+..+++.+........| .+||||.+||.+.|.-+..+.-|-++|...
T Consensus 72 gi~~~p~~~ravaf-ARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 72 GIAFHPALPRAVAF-ARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CeecCCCCcceEEE-EecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 45667765544433 3344566788899887745555444333333 399999999999887555566677777653
|
|
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=87.44 E-value=0.46 Score=48.91 Aligned_cols=37 Identities=24% Similarity=0.184 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHH
Q 006375 467 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVL 503 (648)
Q Consensus 467 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~ 503 (648)
.-+.+++++|..++.-++++|.+.|.|+||+-+..-+
T Consensus 138 ~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 138 RILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 5678999999999889999999999999998765533
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.24 E-value=30 Score=34.13 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=45.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-eccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..+++-|.|| ||.++-.+ ..++.|||-.|+.- ...+......+.|+|.| +++....+ .|-.|.++
T Consensus 129 ~Vt~lsiHPS~K-LALsVg~D----~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~------~i~i~q~d 197 (362)
T KOG0294|consen 129 QVTDLSIHPSGK-LALSVGGD----QVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN------KIDIYQLD 197 (362)
T ss_pred ccceeEecCCCc-eEEEEcCC----ceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc------EEEEEecc
Confidence 488899999998 57676433 47889998877643 23445555569999999 77665432 24455555
Q ss_pred C
Q 006375 160 A 160 (648)
Q Consensus 160 ~ 160 (648)
+
T Consensus 198 ~ 198 (362)
T KOG0294|consen 198 N 198 (362)
T ss_pred c
Confidence 4
|
|
| >PLN02454 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=87.05 E-value=1 Score=46.61 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=30.4
Q ss_pred cHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHh
Q 006375 465 TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN 504 (648)
Q Consensus 465 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 504 (648)
..+++.+.++.|+++..-..-+|.++|||+||.||..+|.
T Consensus 208 ~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~ 247 (414)
T PLN02454 208 ARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAF 247 (414)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHH
Confidence 4468888888888764322236999999999999987765
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.70 E-value=42 Score=34.70 Aligned_cols=150 Identities=11% Similarity=0.164 Sum_probs=86.1
Q ss_pred eeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCC
Q 006375 130 SVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 208 (648)
Q Consensus 130 ~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~ 208 (648)
.++|.-.- .++.++. ....|..+++.++.. ...++..... .-...|.|....++++.. ....+-+.|+..
T Consensus 248 ~Ls~n~~~~nVLaSgs----aD~TV~lWD~~~g~p--~~s~~~~~k~-Vq~l~wh~~~p~~LLsGs--~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGS----ADKTVKLWDVDTGKP--KSSITHHGKK-VQTLEWHPYEPSVLLSGS--YDGTVALKDCRD 318 (463)
T ss_pred HHHhccccceeEEecC----CCceEEEEEcCCCCc--ceehhhcCCc-eeEEEecCCCceEEEecc--ccceEEeeeccC
Confidence 46777666 6666543 334588889988843 3444322222 225678886655554332 234566667653
Q ss_pred CC----ceeEeeecccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee-EecCCCCcccceEEEeCCEEEE
Q 006375 209 PE----ELRVLTPRVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFIDHLAV 282 (648)
Q Consensus 209 ~~----~~~~l~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 282 (648)
.. .++ +. ..+ ...|.|.....+|.+..+ +.|+.+|...++...| +..|.. .|.+++.+...-.+
T Consensus 319 ~~~s~~~wk-~~---g~VEkv~w~~~se~~f~~~tdd----G~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~ 388 (463)
T KOG0270|consen 319 PSNSGKEWK-FD---GEVEKVAWDPHSENSFFVSTDD----GTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGL 388 (463)
T ss_pred ccccCceEE-ec---cceEEEEecCCCceeEEEecCC----ceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcc
Confidence 22 121 11 122 245888887777777653 5799999988777778 555554 47777776643222
Q ss_pred EEecCCeeEEEEEEcC
Q 006375 283 YEREGGLQKITTYRLP 298 (648)
Q Consensus 283 ~~~~~~~~~l~v~~~~ 298 (648)
.....+...+.+++++
T Consensus 389 l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFD 404 (463)
T ss_pred eeeccccceEEEEeec
Confidence 2233344456677766
|
|
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.55 E-value=0.71 Score=50.73 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHcC----CCC---CCeEEEEeeChhHHHHHHHHhhCCCceeEE
Q 006375 467 TDFIACAEYLIKNC----YCT---KEKLCIEGRSAGGLLIGAVLNMRPDLFKAA 513 (648)
Q Consensus 467 ~D~~~~~~~l~~~~----~~d---~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~ 513 (648)
+=+.+|+.++.+.. .-+ |.-|+++||||||.+|-++++ .|...+..
T Consensus 157 EYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~t-lkn~~~~s 209 (973)
T KOG3724|consen 157 EYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLT-LKNEVQGS 209 (973)
T ss_pred HHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHh-hhhhccch
Confidence 44556777776542 122 677999999999988777776 46544443
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.44 E-value=34 Score=33.42 Aligned_cols=94 Identities=13% Similarity=-0.016 Sum_probs=61.8
Q ss_pred CCeEEEEEEEECCCCCeee-ccccCccceeEEecCC---eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEE
Q 006375 103 GDEIYTVYVIDIETGTPVG-KPLVGVTASVEWAGNE---ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSL 178 (648)
Q Consensus 103 G~e~~~l~v~dl~~g~~~~-~~~~~~~~~~~WspDg---~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 178 (648)
++-..+|.|||..|-+... ...++....-+|||=. .|+-+. .+..+|.+.|+.++. -.-.+..+. .-.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~g----tr~~~VrLCDi~SGs--~sH~LsGHr-~~vl 192 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAG----TRDVQVRLCDIASGS--FSHTLSGHR-DGVL 192 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEe----cCCCcEEEEeccCCc--ceeeecccc-CceE
Confidence 4556789999998866543 3556655568899865 454443 344678899998883 233333332 2345
Q ss_pred EEEeCCCCcEEEEEEccccccEEEE
Q 006375 179 GLQASESKKFLFIASESKITRFVFY 203 (648)
Q Consensus 179 ~~~~s~Dg~~l~~~~~~~~~~~l~~ 203 (648)
.+.|||...|++.+....+.-++|-
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWD 217 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWD 217 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEE
Confidence 7899999999998766555444443
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=44 Score=36.68 Aligned_cols=158 Identities=8% Similarity=-0.072 Sum_probs=84.0
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
..++.+|+||+.+|+... . ..+++-...+....... ......++|.++|+++-. .+.. ...+.+.. .++
T Consensus 336 ~~s~avS~dg~~~A~v~~-~----~~l~vg~~~~~~~~~~~-~~~Lt~PS~d~~g~vWtv-~~g~--~~~l~~~~-~~G- 404 (557)
T PRK13615 336 ADAATLSADGRQAAVRNA-S----GVWSVGDGDRDAVLLDT-RPGLVAPSLDAQGYVWST-PASD--PRGLVAWG-PDG- 404 (557)
T ss_pred cccceEcCCCceEEEEcC-C----ceEEEecCCCcceeecc-CCccccCcCcCCCCEEEE-eCCC--ceEEEEec-CCC-
Confidence 367899999999999843 1 26777665522222111 122445889888855533 3222 23333322 122
Q ss_pred CCcEEE-EeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEEC--CCCCceeEe-e-eccc------ceeeeEeecCC
Q 006375 163 SNDICL-YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV--SKPEELRVL-T-PRVV------GVDTAASHRGN 231 (648)
Q Consensus 163 ~~~~~~-~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl--~~~~~~~~l-~-~~~~------~~~~~~s~dg~ 231 (648)
+...+ .......-...+..|+||-++++.....+...|++.-+ .++. ++.| + ++.- .....|..++.
T Consensus 405 -~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~-P~~L~~~p~~l~~~l~~v~sl~W~~~~~ 482 (557)
T PRK13615 405 -VGHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGV-PTSLTTTPLELLASPGTPLDATWVDELD 482 (557)
T ss_pred -ceEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCc-ceEeeeccEEcccCcCcceeeEEcCCCE
Confidence 11111 11112233557899999999988776555566765322 3332 3333 2 2111 12345777665
Q ss_pred EEEEEeccCCCCCcEEEEEeCCCC
Q 006375 232 HFFITRRSDELFNSELLACPVDNT 255 (648)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~~~ 255 (648)
|+.++... ..+..++++.+.++
T Consensus 483 -laVl~~~~-~~~~~v~~v~v~g~ 504 (557)
T PRK13615 483 -VATLTLAP-DGERQVELHQVGGP 504 (557)
T ss_pred -EEEEeccC-CCCceEEEEECCCc
Confidence 66665432 24567788888763
|
|
| >PLN02408 phospholipase A1 | Back alignment and domain information |
|---|
Probab=85.76 E-value=1.2 Score=45.36 Aligned_cols=39 Identities=18% Similarity=0.036 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh
Q 006375 467 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 467 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 505 (648)
+.+.+.++.++++..-.+.+|.++|||+||.||..++..
T Consensus 182 ~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 182 EMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 566677777776543334579999999999998777663
|
|
| >cd00519 Lipase_3 Lipase (class 3) | Back alignment and domain information |
|---|
Probab=85.71 E-value=1.5 Score=42.11 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh
Q 006375 467 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 467 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 505 (648)
+++...++.+.++. ...+|.+.|||+||.+|..++..
T Consensus 112 ~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~ 148 (229)
T cd00519 112 NQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALD 148 (229)
T ss_pred HHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHH
Confidence 45555555555442 34789999999999988776654
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=85.69 E-value=37 Score=33.10 Aligned_cols=161 Identities=8% Similarity=0.069 Sum_probs=82.4
Q ss_pred CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeC
Q 006375 174 DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSELLACPV 252 (648)
Q Consensus 174 ~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 252 (648)
..|.-++.+..|| .|+-++...+.+.|..+|+++++ ...-.+-... +--.+..-++.||.++.+. ...+++|.
T Consensus 44 ~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~-~~~~~~l~~~~FgEGit~~~d~l~qLTWk~----~~~f~yd~ 117 (264)
T PF05096_consen 44 TAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGK-VLQSVPLPPRYFGEGITILGDKLYQLTWKE----GTGFVYDP 117 (264)
T ss_dssp T-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSS-EEEEEE-TTT--EEEEEEETTEEEEEESSS----SEEEEEET
T ss_pred cccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCc-EEEEEECCccccceeEEEECCEEEEEEecC----CeEEEEcc
Confidence 3455566665666 45555666678999999999987 3322221111 1112455588899999973 47888898
Q ss_pred CCCCcceeEec-CCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCC-Cccc
Q 006375 253 DNTSETTVLIP-HRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSE-SVFS 330 (648)
Q Consensus 253 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~-~~~~ 330 (648)
++..... .++ ..++ -++..+++.+++ .+|.++|+.++... -.. .+.+........+..+| ..+-
T Consensus 118 ~tl~~~~-~~~y~~EG---WGLt~dg~~Li~---SDGS~~L~~~dP~~--f~~-----~~~i~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 118 NTLKKIG-TFPYPGEG---WGLTSDGKRLIM---SDGSSRLYFLDPET--FKE-----VRTIQVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp TTTEEEE-EEE-SSS-----EEEECSSCEEE---E-SSSEEEEE-TTT---SE-----EEEEE-EETTEE---EEEEEEE
T ss_pred ccceEEE-EEecCCcc---eEEEcCCCEEEE---ECCccceEEECCcc--cce-----EEEEEEEECCEECCCcEeEEEE
Confidence 7643222 222 2222 233445555543 36778899888652 211 11222211111111111 1111
Q ss_pred ccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 331 SRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 331 ~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
+..++ .+--+-..+.++|+.+|+.
T Consensus 184 ~G~Iy---ANVW~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 184 NGKIY---ANVWQTDRIVRIDPETGKV 207 (264)
T ss_dssp TTEEE---EEETTSSEEEEEETTT-BE
T ss_pred cCEEE---EEeCCCCeEEEEeCCCCeE
Confidence 23333 3444567899999999983
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=85.57 E-value=13 Score=36.11 Aligned_cols=142 Identities=12% Similarity=0.058 Sum_probs=74.4
Q ss_pred EEEeCCCCcEEEEEEccccccEEEEEECCCCCc-eeEe-eecccc--ee---eeEee--cCCEEEEEeccCCCCCcEEEE
Q 006375 179 GLQASESKKFLFIASESKITRFVFYLDVSKPEE-LRVL-TPRVVG--VD---TAASH--RGNHFFITRRSDELFNSELLA 249 (648)
Q Consensus 179 ~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~-~~~l-~~~~~~--~~---~~~s~--dg~~l~~~~~~~~~~~~~l~~ 249 (648)
-+.|-|++..++... .++|.+++++.+.+ ...+ .+.... .. ..||| ||..+..+.. ..|.-
T Consensus 128 cvew~Pns~klasm~----dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d------~tl~~ 197 (370)
T KOG1007|consen 128 CVEWEPNSDKLASMD----DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD------STLQF 197 (370)
T ss_pred eEEEcCCCCeeEEec----cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC------CcEEE
Confidence 367999998887543 57788888887652 1222 121111 11 23876 6666554433 24666
Q ss_pred EeCCCCCcceeEecCCCCcccceEEEeCC--EEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCC
Q 006375 250 CPVDNTSETTVLIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSES 327 (648)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~ 327 (648)
+|+.+ ....+.+....+..+.++.+..+ ++++..-+++ .+.+|+......++ ..+++...-++.+.+
T Consensus 198 ~D~RT-~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdg--yvriWD~R~tk~pv--------~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 198 WDLRT-MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDG--YVRIWDTRKTKFPV--------QELPGHSHWVWAVRF 266 (370)
T ss_pred EEccc-hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCc--cEEEEeccCCCccc--------cccCCCceEEEEEEe
Confidence 77765 33344444333334556666555 4555554544 56666765322222 223333323444555
Q ss_pred cccccEEEEEEeeC
Q 006375 328 VFSSRILRFHYSSL 341 (648)
Q Consensus 328 ~~~~~~l~~~~ss~ 341 (648)
++.-+.|+++.+|.
T Consensus 267 n~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 267 NPEHDQLILSGGSD 280 (370)
T ss_pred cCccceEEEecCCC
Confidence 55566666665544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.43 E-value=35 Score=32.66 Aligned_cols=153 Identities=12% Similarity=0.062 Sum_probs=88.0
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-----cccCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-----PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-----~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
+..+.||+...-++++...+| .|.++|+. ....+. .-..++ ++.|.+-. .++.++. -+..-+||.
T Consensus 63 LfdV~Wse~~e~~~~~a~GDG----SLrl~d~~-~~s~Pi~~~kEH~~EV~-Svdwn~~~r~~~ltsS--WD~TiKLW~- 133 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDG----SLRLFDLT-MPSKPIHKFKEHKREVY-SVDWNTVRRRIFLTSS--WDGTIKLWD- 133 (311)
T ss_pred eeEeeecCCCcceEEEEecCc----eEEEeccC-CCCcchhHHHhhhhheE-EeccccccceeEEeec--cCCceEeec-
Confidence 446789999999999988666 57778843 222221 112233 48899876 6666653 122334443
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc-cceeeeEeecCCEEEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-VGVDTAASHRGNHFFI 235 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~-~~~~~~~s~dg~~l~~ 235 (648)
...+ +....|.+. ........|||--.-++.+.+....-+||-++..+. ...+.... ......|+.-...++.
T Consensus 134 -~~r~--~Sv~Tf~gh-~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk--~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 134 -PNRP--NSVQTFNGH-NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK--FMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred -CCCC--cceEeecCC-ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc--eeEEEeccceeEeecccccCCcEEE
Confidence 3333 234456554 344567889997666665555555566666655533 22232222 2233468888887777
Q ss_pred EeccCCCCCcEEEEEeCCC
Q 006375 236 TRRSDELFNSELLACPVDN 254 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~ 254 (648)
+...+ .-|...|+..
T Consensus 208 Tg~vd----~~vr~wDir~ 222 (311)
T KOG0277|consen 208 TGGVD----NLVRGWDIRN 222 (311)
T ss_pred ecCCC----ceEEEEehhh
Confidence 65542 3566667754
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.37 E-value=40 Score=33.19 Aligned_cols=148 Identities=12% Similarity=0.081 Sum_probs=82.1
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
.++.+++||.+..|+.++ .+| .|.++|+.+.+.+.. .........+|.++..++.... ..+|.++|+.+
T Consensus 15 ~IS~v~f~~~~~~LLvss-WDg----slrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~-----dg~vr~~Dln~ 84 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSS-WDG----SLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGL-----DGQVRRYDLNT 84 (323)
T ss_pred ceeeEEEcCcCCcEEEEe-ccC----cEEEEeccchhhhhheecCCceeeeeccCCceEEEecc-----CceEEEEEecC
Confidence 467889999999888876 667 688888877654432 2233344577877777766443 34699999998
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCC-CCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEecc
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRS 239 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~ 239 (648)
+. ...+-.. +.... .+..++ +|. +++.+ -+..|-++|..... ...+.....-.+..+-.|..|++-+..
T Consensus 85 ~~--~~~igth-~~~i~-ci~~~~~~~~--vIsgs--WD~~ik~wD~R~~~--~~~~~d~~kkVy~~~v~g~~LvVg~~~ 154 (323)
T KOG1036|consen 85 GN--EDQIGTH-DEGIR-CIEYSYEVGC--VISGS--WDKTIKFWDPRNKV--VVGTFDQGKKVYCMDVSGNRLVVGTSD 154 (323)
T ss_pred Cc--ceeeccC-CCceE-EEEeeccCCe--EEEcc--cCccEEEEeccccc--cccccccCceEEEEeccCCEEEEeecC
Confidence 73 2233322 22221 233333 232 22211 23456667765422 112222222335566667777664543
Q ss_pred CCCCCcEEEEEeCCC
Q 006375 240 DELFNSELLACPVDN 254 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~ 254 (648)
.++..+|+..
T Consensus 155 -----r~v~iyDLRn 164 (323)
T KOG1036|consen 155 -----RKVLIYDLRN 164 (323)
T ss_pred -----ceEEEEEccc
Confidence 3667777754
|
|
| >smart00824 PKS_TE Thioesterase | Back alignment and domain information |
|---|
Probab=84.74 E-value=4.2 Score=37.94 Aligned_cols=71 Identities=21% Similarity=0.145 Sum_probs=41.7
Q ss_pred CCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHH-HHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh---CCCc
Q 006375 434 RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIA-CAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM---RPDL 509 (648)
Q Consensus 434 ~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~---~p~~ 509 (648)
..+.|+.++.+|.+.. ......++++.. .++.+... ....++.++|+|+||.++..++.+ .++.
T Consensus 24 ~~~~v~~~~~~g~~~~----------~~~~~~~~~~~~~~~~~l~~~--~~~~~~~l~g~s~Gg~~a~~~a~~l~~~~~~ 91 (212)
T smart00824 24 GRRDVSALPLPGFGPG----------EPLPASADALVEAQAEAVLRA--AGGRPFVLVGHSSGGLLAHAVAARLEARGIP 91 (212)
T ss_pred CCccEEEecCCCCCCC----------CCCCCCHHHHHHHHHHHHHHh--cCCCCeEEEEECHHHHHHHHHHHHHHhCCCC
Confidence 4688999998876421 111123444433 22333332 223679999999999998777664 3444
Q ss_pred eeEEEec
Q 006375 510 FKAAVAA 516 (648)
Q Consensus 510 ~~a~v~~ 516 (648)
+..+++.
T Consensus 92 ~~~l~~~ 98 (212)
T smart00824 92 PAAVVLL 98 (212)
T ss_pred CcEEEEE
Confidence 5555544
|
Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa. |
| >PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria | Back alignment and domain information |
|---|
Probab=84.57 E-value=2.3 Score=38.87 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCC
Q 006375 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP 507 (648)
Q Consensus 468 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p 507 (648)
++...++-|.... ....++.++|||||+.+++.++.+.+
T Consensus 93 ~L~~f~~gl~a~~-~~~~~~tv~GHSYGS~v~G~A~~~~~ 131 (177)
T PF06259_consen 93 RLARFLDGLRATH-GPDAHLTVVGHSYGSTVVGLAAQQGG 131 (177)
T ss_pred HHHHHHHHhhhhc-CCCCCEEEEEecchhHHHHHHhhhCC
Confidence 3444444444433 45679999999999999999888733
|
Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates. |
| >PLN02571 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=84.56 E-value=1.4 Score=45.70 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=29.8
Q ss_pred cHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh
Q 006375 465 TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 465 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 505 (648)
..+++.+.++.|+++..-..-+|.++|||+||.||..+|..
T Consensus 206 ar~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 206 ARDQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 34677788888776532222379999999999998776653
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.38 E-value=85 Score=36.17 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=44.6
Q ss_pred EeCCCC-cEEEEEEcccc-ccEEEEEECCCCCceeEeeeccccee--eeEeecCCEEEEEeccCCCCCcEEEEEeCCCC
Q 006375 181 QASESK-KFLFIASESKI-TRFVFYLDVSKPEELRVLTPRVVGVD--TAASHRGNHFFITRRSDELFNSELLACPVDNT 255 (648)
Q Consensus 181 ~~s~Dg-~~l~~~~~~~~-~~~l~~~dl~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~ 255 (648)
.++.|+ .++.+.+...+ ...+..+....+..+..++.....+. +.++.+.+.++|.+..++....+|+++++...
T Consensus 346 ~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~ 424 (755)
T KOG2100|consen 346 VFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSG 424 (755)
T ss_pred eEeecCCceeEEEeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEcccc
Confidence 356665 34444343333 46666666666521444444332222 23556788999998876566789999998753
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.24 E-value=35 Score=37.06 Aligned_cols=144 Identities=15% Similarity=0.141 Sum_probs=69.4
Q ss_pred EEEEEEEECCCCCeeec-ccc---------Cc-c--ceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeec
Q 006375 106 IYTVYVIDIETGTPVGK-PLV---------GV-T--ASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEK 172 (648)
Q Consensus 106 ~~~l~v~dl~~g~~~~~-~~~---------~~-~--~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 172 (648)
...|++||+.+|..+.. ... +. . .+++=.+.|.++..+ +-...|..++-.+.. ..+-+..+
T Consensus 139 D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG----gtek~lr~wDprt~~--kimkLrGH 212 (735)
T KOG0308|consen 139 DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG----GTEKDLRLWDPRTCK--KIMKLRGH 212 (735)
T ss_pred CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec----CcccceEEecccccc--ceeeeecc
Confidence 45899999998854211 111 11 1 112222333343322 222346666666652 22222222
Q ss_pred CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeeccccee-eeEeecCCEEEEEeccCCCCCcEEEEE
Q 006375 173 DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGVD-TAASHRGNHFFITRRSDELFNSELLAC 250 (648)
Q Consensus 173 ~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~l~~~ 250 (648)
....- .+-.++||+.++-.++ +.-|.++||.... -.+... ..+++. ...+|+=+.+|+-.. ...|+++
T Consensus 213 TdNVr-~ll~~dDGt~~ls~sS---DgtIrlWdLgqQrCl~T~~v-H~e~VWaL~~~~sf~~vYsG~r-----d~~i~~T 282 (735)
T KOG0308|consen 213 TDNVR-VLLVNDDGTRLLSASS---DGTIRLWDLGQQRCLATYIV-HKEGVWALQSSPSFTHVYSGGR-----DGNIYRT 282 (735)
T ss_pred ccceE-EEEEcCCCCeEeecCC---CceEEeeeccccceeeeEEe-ccCceEEEeeCCCcceEEecCC-----CCcEEec
Confidence 22222 3457899999874332 2446777876543 111111 222222 224444444554322 2579999
Q ss_pred eCCCCCcceeEecCC
Q 006375 251 PVDNTSETTVLIPHR 265 (648)
Q Consensus 251 ~~~~~~~~~~~~~~~ 265 (648)
|+..+...+.++.++
T Consensus 283 dl~n~~~~tlick~d 297 (735)
T KOG0308|consen 283 DLRNPAKSTLICKED 297 (735)
T ss_pred ccCCchhheEeecCC
Confidence 998764444455544
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.78 E-value=34 Score=34.67 Aligned_cols=148 Identities=13% Similarity=0.206 Sum_probs=75.6
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC------CCeeecc-ccC--ccceeEEecCCeEEEEEeCCCCCC
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET------GTPVGKP-LVG--VTASVEWAGNEALVYITMDEILRP 150 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~------g~~~~~~-~~~--~~~~~~WspDg~l~y~~~~~~~~~ 150 (648)
+--+..+.+|.+|++||- |++..++.||.++. .++.... -+. ....++|.-.++++|.. .+.
T Consensus 56 ~GCiNAlqFS~N~~~L~S-----GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG----~~~ 126 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLAS-----GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG----ERW 126 (609)
T ss_pred ccccceeeeccCCeEEee-----cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC----CCc
Confidence 345678899999999873 44456777787753 1221110 011 12336665445777864 345
Q ss_pred ceEEEEECCCCCCCcEEEEeecCC-CeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeecc--cce-eee
Q 006375 151 DKAWLHKLEADQSNDICLYHEKDD-IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRV--VGV-DTA 225 (648)
Q Consensus 151 ~~l~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~--~~~-~~~ 225 (648)
.+|..|++.+. +..-++.+.+. .-......+|-...++..+ ....+-++|..... ...++.+.. ..+ ...
T Consensus 127 ~~VI~HDiEt~--qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t---~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 127 GTVIKHDIETK--QSIYVANENNNRGDVYHMDQHPTDNTLIVVT---RAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE 201 (609)
T ss_pred ceeEeeecccc--eeeeeecccCcccceeecccCCCCceEEEEe---cCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence 67999999987 34556655542 1222344566433332222 12345566665433 222222211 111 122
Q ss_pred EeecCCEEEEEeccCC
Q 006375 226 ASHRGNHFFITRRSDE 241 (648)
Q Consensus 226 ~s~dg~~l~~~~~~~~ 241 (648)
+.|---.|+.+.+..+
T Consensus 202 F~P~~P~Li~~~~~~~ 217 (609)
T KOG4227|consen 202 FHPETPALILVNSETG 217 (609)
T ss_pred ecCCCceeEEeccccC
Confidence 5555555655555433
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.60 E-value=7.3 Score=39.15 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=73.2
Q ss_pred ecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee----ccccCccceeEEecCCeEEEEEeC
Q 006375 70 DENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG----KPLVGVTASVEWAGNEALVYITMD 145 (648)
Q Consensus 70 d~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~----~~~~~~~~~~~WspDg~l~y~~~~ 145 (648)
|.+.+.. -+-++-.++|||..+-+.++...+| .|+|||+..+.... .....-..-++|+.+-.++.+..+
T Consensus 249 d~~Pf~g--H~~SVEDLqWSptE~~vfaScS~Dg----sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D 322 (440)
T KOG0302|consen 249 DQRPFTG--HTKSVEDLQWSPTEDGVFASCSCDG----SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD 322 (440)
T ss_pred cCccccc--cccchhhhccCCccCceEEeeecCc----eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence 4444432 2467789999999999999988877 69999998884332 111222334889877654333333
Q ss_pred CCCCCceEEEEECCCCCC-CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCC
Q 006375 146 EILRPDKAWLHKLEADQS-NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 208 (648)
Q Consensus 146 ~~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~ 208 (648)
+ .. +.+++|..-+. +....|.-+... ...+.|+|....++..+. ..+.|-++|+..
T Consensus 323 d--Gt--~~iwDLR~~~~~~pVA~fk~Hk~p-ItsieW~p~e~s~iaasg--~D~QitiWDlsv 379 (440)
T KOG0302|consen 323 D--GT--LSIWDLRQFKSGQPVATFKYHKAP-ITSIEWHPHEDSVIAASG--EDNQITIWDLSV 379 (440)
T ss_pred C--ce--EEEEEhhhccCCCcceeEEeccCC-eeEEEeccccCceEEecc--CCCcEEEEEeec
Confidence 2 12 33344433221 233444444333 347899997766665443 345666666654
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=83.45 E-value=19 Score=38.70 Aligned_cols=85 Identities=12% Similarity=0.189 Sum_probs=52.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 161 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~ 161 (648)
.+...++||+.++++..... | .|.++|...+........-....++|.|||.++.+..+ ..++..+|++-.
T Consensus 261 ~v~~ca~sp~E~kLvlGC~D-g----SiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~----qGelQ~FD~ALs 331 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCED-G----SIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSE----QGELQCFDMALS 331 (545)
T ss_pred cceEEecCcccceEEEEecC-C----eEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcC----CceEEEEEeecC
Confidence 34567889999999988652 3 68899987765443222222345899999966666532 345667776655
Q ss_pred CCCcEEEEeecCCC
Q 006375 162 QSNDICLYHEKDDI 175 (648)
Q Consensus 162 ~~~~~~~~~~~~~~ 175 (648)
.-+-.++-++..+.
T Consensus 332 pi~~qLlsEd~~P~ 345 (545)
T PF11768_consen 332 PIKMQLLSEDATPK 345 (545)
T ss_pred ccceeeccccCCCc
Confidence 33334443443333
|
|
| >PLN02324 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=83.41 E-value=1.8 Score=44.84 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=29.7
Q ss_pred cHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHh
Q 006375 465 TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN 504 (648)
Q Consensus 465 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 504 (648)
..+.+.+.++.|+++..-..-+|.++|||+||.||..+|.
T Consensus 195 areqVl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~ 234 (415)
T PLN02324 195 AQEQVQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAA 234 (415)
T ss_pred HHHHHHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHH
Confidence 3466777788888764322348999999999999877765
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.22 E-value=50 Score=32.66 Aligned_cols=139 Identities=15% Similarity=0.161 Sum_probs=71.2
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCC--eEEEEEeCCCCCCceEEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE--ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg--~l~y~~~~~~~~~~~l~~~~ 157 (648)
++..+++ +|.++|- |+-.-+|+|+|+.........+ .+....+.|.++- .-+....+ ..++..++
T Consensus 45 sitavAV--s~~~~aS-----GssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd----DG~i~iw~ 113 (362)
T KOG0294|consen 45 SITALAV--SGPYVAS-----GSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD----DGHIIIWR 113 (362)
T ss_pred ceeEEEe--cceeEec-----cCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC----CCcEEEEE
Confidence 3444443 4666653 3334589999998765543211 2233446676664 22233322 23455555
Q ss_pred CCCCCCCcEEEEeec-CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccceeeeEeecCCEEEE
Q 006375 158 LEADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGVDTAASHRGNHFFI 235 (648)
Q Consensus 158 l~~~~~~~~~~~~~~-~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~~~~~~s~dg~~l~~ 235 (648)
.+. .+++-.-. ...-..+++..|.|+..+ +.. ++..|.+++|-.+. ...+.+ ........|+|.|+++++
T Consensus 114 ~~~----W~~~~slK~H~~~Vt~lsiHPS~KLAL-sVg--~D~~lr~WNLV~Gr-~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 114 VGS----WELLKSLKAHKGQVTDLSIHPSGKLAL-SVG--GDQVLRTWNLVRGR-VAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred cCC----eEEeeeecccccccceeEecCCCceEE-EEc--CCceeeeehhhcCc-cceeeccCCcceeeEEcCCCCEEEE
Confidence 443 22222111 111244678889987544 333 34557777777665 111111 122233568999998887
Q ss_pred Eecc
Q 006375 236 TRRS 239 (648)
Q Consensus 236 ~~~~ 239 (648)
....
T Consensus 186 ~~~~ 189 (362)
T KOG0294|consen 186 SGRN 189 (362)
T ss_pred Eecc
Confidence 7653
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.04 E-value=17 Score=40.62 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=66.7
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEE-CC-CCCe-eeccccC---ccceeEEecCCeEEEEEeCCCCCCceEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVID-IE-TGTP-VGKPLVG---VTASVEWAGNEALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~d-l~-~g~~-~~~~~~~---~~~~~~WspDg~l~y~~~~~~~~~~~l~~~ 156 (648)
+...++||.|+++|-+-. .| +|.||. .. .+.. ....+.+ .....+||+||..+|++ ++-..+.++
T Consensus 208 ~t~~~~spn~~~~Aa~d~-dG----rI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSG----G~E~VLv~W 278 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDS-DG----RILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSG----GREGVLVLW 278 (792)
T ss_pred ceeEEeccccceEEEecc-CC----cEEEEeccccccccccceEEEecccccceeEEecCCceEeec----ccceEEEEE
Confidence 566899999999987644 35 466664 33 1222 1222222 14569999999444553 344557889
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCC
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP 209 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~ 209 (648)
.++++. .+. +..- ..-...+.+|||+....+... ++.|.++.+.+.
T Consensus 279 q~~T~~--kqf-LPRL-gs~I~~i~vS~ds~~~sl~~~---DNqI~li~~~dl 324 (792)
T KOG1963|consen 279 QLETGK--KQF-LPRL-GSPILHIVVSPDSDLYSLVLE---DNQIHLIKASDL 324 (792)
T ss_pred eecCCC--ccc-cccc-CCeeEEEEEcCCCCeEEEEec---CceEEEEeccch
Confidence 999984 222 2111 233557889999987655433 466777766443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.70 E-value=42 Score=31.34 Aligned_cols=132 Identities=12% Similarity=0.166 Sum_probs=67.1
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEE----ECCCCCeee-----------ccccCccceeEEecCCeEEEEEe
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVI----DIETGTPVG-----------KPLVGVTASVEWAGNEALVYITM 144 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~----dl~~g~~~~-----------~~~~~~~~~~~WspDg~l~y~~~ 144 (648)
...+....|.|.|++-|..++ +..++|.-+ |+..+...+ ..-.+.....+|||+|.++-+..
T Consensus 32 sqairav~fhp~g~lyavgsn---skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSN---SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred hhheeeEEecCCCceEEeccC---CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 457788999999998887654 334555544 343222111 01122345589999997766665
Q ss_pred CCCCCCceEEEEECCCCCC-CcEEEEeecCCCeEEEEEeC---CCCcEEEEEEccccccEEEEEECCCCCceeEeeec
Q 006375 145 DEILRPDKAWLHKLEADQS-NDICLYHEKDDIYSLGLQAS---ESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR 218 (648)
Q Consensus 145 ~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~s---~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~ 218 (648)
++ ..-++..++.++.+. ...+-|.-.|... -+..+- ..|..|++ +..-++-.||+-|...++.+..+...
T Consensus 109 nd--k~ik~l~fn~dt~~~~g~dle~nmhdgti-rdl~fld~~~s~~~il~-s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 109 ND--KTIKVLPFNADTCNATGHDLEFNMHDGTI-RDLAFLDDPESGGAILA-SAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred CC--ceEEEEecccccccccCcceeeeecCCce-eeeEEecCCCcCceEEE-ecCCCcceEEEeecCCCCcceeecCC
Confidence 33 233444444443321 1112222222221 112222 22333443 34445678888888777644444443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=82.43 E-value=23 Score=34.52 Aligned_cols=36 Identities=36% Similarity=0.389 Sum_probs=27.6
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~ 120 (648)
+..-..+.||||+..|||+.+. | +|+|+|+.+.+..
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~-G----~i~vfdl~g~~lf 78 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAEST-G----TIRVFDLMGSELF 78 (282)
T ss_pred CchheEEEECCCCcEEEEEcCC-C----eEEEEecccceeE
Confidence 3455678999999999999763 3 7889999875543
|
|
| >PLN02517 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=82.08 E-value=2 Score=46.40 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=50.2
Q ss_pred CchhHHHHHHCCCEEEEEccCCCCCCChhhhhccccc-CCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHH
Q 006375 424 FNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL-KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAV 502 (648)
Q Consensus 424 ~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~-~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~ 502 (648)
|...+..|++.||. --|.+|. ..+|+.+.... .+..-+..+...++.+.... ..++|.|+||||||.++...
T Consensus 158 w~kLIe~L~~iGY~--~~nL~gA---PYDWRls~~~le~rd~YF~rLK~lIE~ay~~n--ggkKVVLV~HSMGglv~lyF 230 (642)
T PLN02517 158 WAVLIANLARIGYE--EKNMYMA---AYDWRLSFQNTEVRDQTLSRLKSNIELMVATN--GGKKVVVVPHSMGVLYFLHF 230 (642)
T ss_pred HHHHHHHHHHcCCC--CCceeec---ccccccCccchhhhhHHHHHHHHHHHHHHHHc--CCCeEEEEEeCCchHHHHHH
Confidence 35667888999997 4566643 34676553222 22344567777777766542 23799999999999999887
Q ss_pred Hhh
Q 006375 503 LNM 505 (648)
Q Consensus 503 ~~~ 505 (648)
+..
T Consensus 231 L~w 233 (642)
T PLN02517 231 MKW 233 (642)
T ss_pred HHh
Confidence 764
|
|
| >PLN02802 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=81.66 E-value=2.2 Score=45.17 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHh
Q 006375 467 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN 504 (648)
Q Consensus 467 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 504 (648)
+++...++.|++...-...+|.|+|||+||.||..++.
T Consensus 312 eqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~ 349 (509)
T PLN02802 312 ESVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVAD 349 (509)
T ss_pred HHHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHH
Confidence 56777777777653222348999999999998876665
|
|
| >COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.47 E-value=6.3 Score=39.62 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=71.9
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc---------CCCCCCCcccccccCC---CCCHHH
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML---------DPTIPLTTAEWEEWGD---PWKEEF 549 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~---------~~~~~~~~~~~~~~g~---~~~~~~ 549 (648)
..-++..|.|.|--|..+...|...|. +.|+|..+ .|.+.... ..+-|.....|-+-|- .+.+..
T Consensus 231 ~~Ik~F~VTGaSKRgWttwLTAIaDpr-v~aIvp~v--~D~Lni~a~L~hiyrsYGgnwpi~l~pyyaegi~erl~tp~f 307 (507)
T COG4287 231 VEIKGFMVTGASKRGWTTWLTAIADPR-VFAIVPFV--YDNLNIEAQLLHIYRSYGGNWPIKLAPYYAEGIDERLETPLF 307 (507)
T ss_pred eeeeeEEEeccccchHHHHHHHhcCcc-hhhhhhhH--HhhcccHHHHHHHHHhhCCCCCcccchhHhhhHHHhhcCHHH
Confidence 445899999999999988777776775 44444432 45443220 0011111111100011 123333
Q ss_pred HHHHHcCCccccC-----CCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccC
Q 006375 550 YFYMKSYSPVDNV-----KAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 615 (648)
Q Consensus 550 ~~~~~~~sp~~~~-----~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~ 615 (648)
...+.-.+|+... .+...| -.|+.|..|+..++..+.-++..|...+ -++..++..|..
T Consensus 308 kqL~~IiDPlay~~try~~RLalp-KyivnaSgDdff~pDsa~lYyd~LPG~k------aLrmvPN~~H~~ 371 (507)
T COG4287 308 KQLLEIIDPLAYRNTRYQLRLALP-KYIVNASGDDFFVPDSANLYYDDLPGEK------ALRMVPNDPHNL 371 (507)
T ss_pred HHHHHhhcHHHHhhhhhhhhcccc-ceeecccCCcccCCCccceeeccCCCce------eeeeCCCCcchh
Confidence 3344456777655 345778 7777888888888999999999886432 234445888854
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.29 E-value=84 Score=33.86 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=23.4
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT 118 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~ 118 (648)
..+.+||||+||.-+ |.-..+|.++|++.-.
T Consensus 55 t~ik~s~DGqY~lAt----G~YKP~ikvydlanLS 85 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLAT----GTYKPQIKVYDLANLS 85 (703)
T ss_pred ceeEecCCCcEEEEe----cccCCceEEEEcccce
Confidence 478999999998754 4445689999987643
|
|
| >PLN02606 palmitoyl-protein thioesterase | Back alignment and domain information |
|---|
Probab=81.16 E-value=13 Score=36.92 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=55.4
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
+.| ||+.||-......+++......+.+. |.-+.++. -|.+. -..| -.+..+.+..+.+.|.+....
T Consensus 26 ~~P-vViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~~~-~~s~--------~~~~~~Qv~~vce~l~~~~~L- 93 (306)
T PLN02606 26 SVP-FVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGNGV-QDSL--------FMPLRQQASIACEKIKQMKEL- 93 (306)
T ss_pred CCC-EEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECCCc-cccc--------ccCHHHHHHHHHHHHhcchhh-
Confidence 456 55569954444444444444444323 66555554 23211 0011 113345666666666654333
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCC--ceeEEEec
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPD--LFKAAVAA 516 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~--~~~a~v~~ 516 (648)
++-+-++|+|.||.++=+++.+.|+ .++-.|..
T Consensus 94 ~~G~naIGfSQGglflRa~ierc~~~p~V~nlISl 128 (306)
T PLN02606 94 SEGYNIVAESQGNLVARGLIEFCDNAPPVINYVSL 128 (306)
T ss_pred cCceEEEEEcchhHHHHHHHHHCCCCCCcceEEEe
Confidence 2468999999999988888887766 25555543
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=80.96 E-value=58 Score=31.78 Aligned_cols=149 Identities=12% Similarity=0.040 Sum_probs=71.0
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
.+..+|||. +=|+.+..| .|--+|.+||+...-.+.. .-..+.--|||..+++-. ...|.+++-.+..
T Consensus 66 dvapapdG~-VWft~qg~g----aiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~-----~~aI~R~dpkt~e 135 (353)
T COG4257 66 DVAPAPDGA-VWFTAQGTG----AIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDT-----GLAIGRLDPKTLE 135 (353)
T ss_pred ccccCCCCc-eEEecCccc----cceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecC-----cceeEEecCcccc
Confidence 457789995 345544333 5777899999876544432 223466678884333321 1135555443432
Q ss_pred CCcEEEE-eecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee--eeEeecCCEEEEEecc
Q 006375 163 SNDICLY-HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD--TAASHRGNHFFITRRS 239 (648)
Q Consensus 163 ~~~~~~~-~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~~~~ 239 (648)
.+.-.+- +..+.. .....+.++|. |.|+....-.. ++|-.++. ++..-.-....- ....|||+ +||.+-.
T Consensus 136 vt~f~lp~~~a~~n-let~vfD~~G~-lWFt~q~G~yG---rLdPa~~~-i~vfpaPqG~gpyGi~atpdGs-vwyasla 208 (353)
T COG4257 136 VTRFPLPLEHADAN-LETAVFDPWGN-LWFTGQIGAYG---RLDPARNV-ISVFPAPQGGGPYGICATPDGS-VWYASLA 208 (353)
T ss_pred eEEeecccccCCCc-ccceeeCCCcc-EEEeeccccce---ecCcccCc-eeeeccCCCCCCcceEECCCCc-EEEEecc
Confidence 2111111 112222 22456677774 44543332111 33443332 222111111111 23678886 7777665
Q ss_pred CCCCCcEEEEEeCCC
Q 006375 240 DELFNSELLACPVDN 254 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~ 254 (648)
+ .-|.++|...
T Consensus 209 g----naiaridp~~ 219 (353)
T COG4257 209 G----NAIARIDPFA 219 (353)
T ss_pred c----cceEEccccc
Confidence 2 2477777654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.82 E-value=52 Score=31.20 Aligned_cols=189 Identities=8% Similarity=0.018 Sum_probs=96.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCc-cceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV-TASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~-~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+...++.-||+|..- -|+++ +|++|++..|..+.+ ...+. ...++-+-|+ +|.- .+....++.+++
T Consensus 19 aV~avryN~dGnY~lt----cGsdr-tvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s-----~GgDk~v~vwDV 88 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLT----CGSDR-TVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFAS-----CGGDKAVQVWDV 88 (307)
T ss_pred ceEEEEEccCCCEEEE----cCCCc-eEEeecccccceeeeecCCCceeeecccccccccccc-----CCCCceEEEEEc
Confidence 4567899999998542 25544 799999988876542 11121 2235556677 6643 234456888999
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeE-eeecccceeeeEeecCCEEEEE
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRV-LTPRVVGVDTAASHRGNHFFIT 236 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~-l~~~~~~~~~~~s~dg~~l~~~ 236 (648)
.+++ -..-|..+.... ..+.+..+.. +++ +. .-++.+.++|..+.. ++.+ +....+++ .++.-.+..|+--
T Consensus 89 ~TGk--v~Rr~rgH~aqV-NtV~fNeesS-Vv~-Sg-sfD~s~r~wDCRS~s~ePiQildea~D~V-~Si~v~~heIvaG 161 (307)
T KOG0316|consen 89 NTGK--VDRRFRGHLAQV-NTVRFNEESS-VVA-SG-SFDSSVRLWDCRSRSFEPIQILDEAKDGV-SSIDVAEHEIVAG 161 (307)
T ss_pred ccCe--eeeeccccccee-eEEEecCcce-EEE-ec-cccceeEEEEcccCCCCccchhhhhcCce-eEEEecccEEEee
Confidence 9983 333444443332 2455555543 333 22 234567777877665 2333 32222332 2333344444332
Q ss_pred eccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC--EEEEEEecCCeeEEEEEEcCC
Q 006375 237 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~~~ 299 (648)
+. .+.+..+|+..+.. ...-....+..+.+.++ -.+..... +.+++++.++
T Consensus 162 S~-----DGtvRtydiR~G~l----~sDy~g~pit~vs~s~d~nc~La~~l~---stlrLlDk~t 214 (307)
T KOG0316|consen 162 SV-----DGTVRTYDIRKGTL----SSDYFGHPITSVSFSKDGNCSLASSLD---STLRLLDKET 214 (307)
T ss_pred cc-----CCcEEEEEeeccee----ehhhcCCcceeEEecCCCCEEEEeecc---ceeeecccch
Confidence 22 23555666654221 11111222444555444 33333332 4567777663
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.69 E-value=68 Score=32.43 Aligned_cols=194 Identities=9% Similarity=0.012 Sum_probs=97.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee--ec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV--GK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~--~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
++..++++-.|++||=.+. ...+.+||.++-..- .. .-+...+.+.+-|-| .|+=... ...+..++
T Consensus 152 sv~di~~~a~Gk~l~tcSs-----Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr-----D~tik~We 221 (406)
T KOG0295|consen 152 SVFDISFDASGKYLATCSS-----DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR-----DNTIKAWE 221 (406)
T ss_pred ceeEEEEecCccEEEecCC-----ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc-----ccceeEEe
Confidence 4678889999988775433 234777887653211 11 112234568888999 7754332 33477788
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee---------e----
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD---------T---- 224 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~---------~---- 224 (648)
+.++ .-...|..+ +.|.-.+..+-||..++ ....+..|.++-+.+++-...+...+-.++ +
T Consensus 222 ~~tg--~cv~t~~~h-~ewvr~v~v~~DGti~A---s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~ 295 (406)
T KOG0295|consen 222 CDTG--YCVKTFPGH-SEWVRMVRVNQDGTIIA---SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSIS 295 (406)
T ss_pred cccc--eeEEeccCc-hHhEEEEEecCCeeEEE---ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchh
Confidence 8887 333444433 34655677888986543 223344455555555520001111110011 1
Q ss_pred --eEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEE-EEEecCCeeEEEEEEcCC
Q 006375 225 --AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLA-VYEREGGLQKITTYRLPA 299 (648)
Q Consensus 225 --~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~l~v~~~~~ 299 (648)
.-+.+|.++.+...++ ..+-..|+..+.-.-.+..+..- +.++.+.+.+-| +...+++ .+.+|++..
T Consensus 296 ~at~~~~~~~~l~s~SrD----ktIk~wdv~tg~cL~tL~ghdnw--Vr~~af~p~Gkyi~ScaDDk--tlrvwdl~~ 365 (406)
T KOG0295|consen 296 EATGSTNGGQVLGSGSRD----KTIKIWDVSTGMCLFTLVGHDNW--VRGVAFSPGGKYILSCADDK--TLRVWDLKN 365 (406)
T ss_pred hccCCCCCccEEEeeccc----ceEEEEeccCCeEEEEEecccce--eeeeEEcCCCeEEEEEecCC--cEEEEEecc
Confidence 0122334454444432 24555666653211114545443 566666544333 3344443 577788874
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.66 E-value=29 Score=36.77 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=51.8
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec--cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..-+|||||.-|.-+ -. ...|.+|.- +|-.+.. ........++|.|++ .++|... .+++.-.|
T Consensus 106 A~~~gRW~~dGtgLlt~-GE----DG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g------~h~~IKpL 173 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTA-GE----DGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG------GHISIKPL 173 (737)
T ss_pred hhhhcccCCCCceeeee-cC----CceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC------CeEEEeec
Confidence 44567999999876532 22 336777764 4433321 122234569999999 9999753 23555555
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEE
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFL 189 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l 189 (648)
... ....-.. ..++..+.+.|++....|
T Consensus 174 ~~n--~k~i~Wk-AHDGiiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 174 AAN--SKIIRWR-AHDGLVLSLSWSTQSNII 201 (737)
T ss_pred ccc--cceeEEe-ccCcEEEEeecCccccce
Confidence 443 1122222 223455566666665444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 648 | ||||
| 2xe4_A | 751 | Structure Of Oligopeptidase B From Leishmania Major | 1e-132 | ||
| 3iun_A | 693 | Appep_d622n Opened State Length = 693 | 2e-58 | ||
| 3mun_A | 693 | Appep_pepclose Closed State Length = 693 | 3e-58 | ||
| 3iuj_A | 693 | Appep_wt2 Opened State Length = 693 | 4e-57 | ||
| 3ivm_A | 693 | Appep_wt+pp Closed State Length = 693 | 4e-57 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 2e-52 | ||
| 1yr2_A | 741 | Structural And Mechanistic Analysis Of Two Prolyl E | 2e-49 | ||
| 3ddu_A | 709 | Prolyl Oligopeptidase With Gsk552 Length = 709 | 6e-42 | ||
| 1qfm_A | 710 | Prolyl Oligopeptidase From Porcine Muscle Length = | 1e-41 | ||
| 1qfs_A | 710 | Prolyl Oligopeptidase From Porcine Muscle With Cova | 3e-41 | ||
| 1vz2_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y73c/v427 | 5e-41 | ||
| 1vz3_A | 710 | Prolyl Oligopeptidase From Porcine Brain, T597c Mut | 6e-41 | ||
| 1e8m_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant, C | 7e-41 | ||
| 1h2x_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y473f Mut | 9e-41 | ||
| 1o6g_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641n Mut | 9e-41 | ||
| 1e5t_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant Le | 1e-40 | ||
| 1o6f_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641a Mut | 2e-40 | ||
| 4ax4_A | 710 | Prolyl Oligopeptidase From Porcine Brain, H680a Mut | 5e-40 | ||
| 4hvt_A | 711 | Structure Of A Post-Proline Cleaving Enzyme From Ri | 3e-35 | ||
| 1ve6_A | 582 | Crystal Structure Of An Acylpeptide HydrolaseESTERA | 4e-04 | ||
| 3o4h_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 4e-04 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 4e-04 | ||
| 2qzp_A | 562 | Crystal Structure Of Mutation Of An Acylptide Hydro | 4e-04 | ||
| 2hu8_A | 582 | Binding Of Inhibitors By Acylaminoacyl Peptidase Le | 8e-04 |
| >pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major Length = 751 | Back alignment and structure |
|
| >pdb|3IUN|A Chain A, Appep_d622n Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3MUN|A Chain A, Appep_pepclose Closed State Length = 693 | Back alignment and structure |
|
| >pdb|3IUJ|A Chain A, Appep_wt2 Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3IVM|A Chain A, Appep_wt+pp Closed State Length = 693 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 741 | Back alignment and structure |
|
| >pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552 Length = 709 | Back alignment and structure |
|
| >pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle Length = 710 | Back alignment and structure |
|
| >pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently Bound Inhibitor Z-Pro-Prolinal Length = 710 | Back alignment and structure |
|
| >pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant, Complexed With Inhibitor Length = 710 | Back alignment and structure |
|
| >pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant Length = 710 | Back alignment and structure |
|
| >pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From Rickettsia Typhi Length = 711 | Back alignment and structure |
|
| >pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM Aeropyrum Pernix K1 Length = 582 | Back alignment and structure |
|
| >pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide HydrolaseESTERASE FROM AEROPYRUM PERNIX K1 Length = 562 | Back alignment and structure |
|
| >pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 648 | |||
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 0.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 0.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 0.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 0.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 0.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 7e-29 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 8e-26 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 1e-12 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 3e-12 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 2e-11 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 2e-10 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 1e-09 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 2e-09 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 3e-08 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 4e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-07 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 6e-08 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 1e-07 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 2e-07 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 5e-07 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 6e-07 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 8e-07 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 6e-05 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 5e-04 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 8e-04 |
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Length = 751 | Back alignment and structure |
|---|
Score = 858 bits (2220), Expect = 0.0
Identities = 266/658 (40%), Positives = 371/658 (56%), Gaps = 25/658 (3%)
Query: 2 FAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPD 61
+AE I ++D+SAP+ G Y YYTR ++GK Y +CR D
Sbjct: 107 YAEHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCRVFTDK------------EPGD 154
Query: 62 APPEHLILDENVKAEGRGFYSVGCFQ-VSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTP 119
E +I+D N AEG+ F V + P++ LVA++ D G+E+YT+ I
Sbjct: 155 VAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT 214
Query: 120 VGKPLVGVTASVEWAG-NEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSL 178
+ + G + W + +L Y+T DE LR +K W H + QS D+CLY E + ++S
Sbjct: 215 IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSA 274
Query: 179 GLQASESKKFLFIASESKITRFVFYLDVSKPE---ELRVLTPRVVGVD-TAASHRGNHFF 234
+ + L I S+S T V LD+ K L ++ PR GV H +H
Sbjct: 275 FMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLV 334
Query: 235 ITRRSDELFNSELLACPVDNTSE-TTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKIT 293
I N +LL P S+ + VL+ H E V ++ I + ++L V R GL +I
Sbjct: 335 ILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIW 394
Query: 294 TYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESV---FSSRILRFHYSSLRTPPSVYDY 350
T + K+ G + V +P++++ ES + R YSSL TP + +D
Sbjct: 395 TMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDV 454
Query: 351 DMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLL 410
K+ V GGFD NY ER++A+A D T+IP+ +VY K+L + P +L
Sbjct: 455 SPQDHSRTAVKVREVGGGFDAANYKVERRFATAPDQTKIPLSVVYHKDL-DMSQPQPCML 513
Query: 411 YGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG-KFLKKKNTFTDF 469
YGYGSY + DP F+ L DRG IFAIA IRGG ELGR WYE G K+L K+NTF+DF
Sbjct: 514 YGYGSYGLSMDPQFSIQHLPYCDRGMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFSDF 573
Query: 470 IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP 529
IA AE+L+ T +L EGRSAGGLL+GAVLNMRPDLFK A+A VPFVDV+TTM DP
Sbjct: 574 IAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTMCDP 633
Query: 530 TIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKF 589
+IPLTT EWEEWG+P + ++Y YM SYSP+DNV+AQ YP+I+V GL+DPRV Y EPAK+
Sbjct: 634 SIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMVQCGLHDPRVAYWEPAKW 693
Query: 590 VAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVGSEQ 647
V+KLRE KTD+N +L ++ +GHFS R++ +E+A F+ + L + +
Sbjct: 694 VSKLRECKTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLKSTVRLLVRR 751
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Length = 693 | Back alignment and structure |
|---|
Score = 779 bits (2015), Expect = 0.0
Identities = 168/654 (25%), Positives = 291/654 (44%), Gaps = 56/654 (8%)
Query: 2 FAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPD 61
+L APFR+G Y+Y+ + + R+ +
Sbjct: 69 KEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQ------------------QE 110
Query: 62 APPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG 121
P + LD N + G ++ S D +++AY+ G + ++++D+E+ P+
Sbjct: 111 GKPAEVFLDPNTLSPD-GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE 169
Query: 122 KPLVGVTAS-VEWAGNEALVYITMDE--------ILRPDKAWLHKLEADQSNDICLYHEK 172
PL V S + W GNE Y + D+ K + H+L Q +D ++
Sbjct: 170 TPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAI 229
Query: 173 DDIY--SLGLQASESKKFLFIASESKITRF-VFYLDVSKPE-ELRVLTPRVVGVDTAASH 228
+ +G +E +FL I++ + + ++ D+S+ L + + + +
Sbjct: 230 PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDN 289
Query: 229 RGNHFFITRRSDELFNSELLACPVDNTSET--TVLIPHRESVKLQDIQLFIDHLAVYERE 286
+G+ ++ D N L+ N LIP R+ V + +L
Sbjct: 290 KGSTLYLLTNRDA-PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMV 346
Query: 287 GGLQKITTYRLPAVGEPLKSLQGGKSVEFIDP-VYSIDPSESVFSSRILRFHYSSLRTPP 345
++ + +G + E P + S+ L F + + PP
Sbjct: 347 DATARVEQF----------DYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPP 396
Query: 346 SVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGS 405
++Y ++ G L + F +Y +E+++ + DGT++P+ I YRK L KLDGS
Sbjct: 397 TLYRFEPKSGAISLYRASAA--PFKPEDYVSEQRFYQSKDGTRVPLIISYRKGL-KLDGS 453
Query: 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNT 465
+P +LYGYG +++ P+F+ S + LD G ++A+A +RGGGE G+ W+ G K+N
Sbjct: 454 NPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNV 513
Query: 466 FTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 525
F DFIA AEYL Y ++L I G S GGLL+GAV+ RPDL + A+P V VL
Sbjct: 514 FDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMR---VALPAVGVLDM 570
Query: 526 MLDPTIPLTTAEWEEWGDPW-KEEFYFYMKSYSPVDNVK-AQNYPHILVTAGLNDPRVMY 583
+ T T ++G E + Y+K YSP+ NV+ +YP +VT +D RV+
Sbjct: 571 LRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVVP 630
Query: 584 SEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637
+ KF A L+ + L + E AGH + + + + ++A Y F + +
Sbjct: 631 AHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEM 684
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Length = 695 | Back alignment and structure |
|---|
Score = 770 bits (1990), Expect = 0.0
Identities = 165/662 (24%), Positives = 287/662 (43%), Gaps = 50/662 (7%)
Query: 2 FAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPD 61
A K + VS P R+ ++Y RT + KE R +
Sbjct: 60 AARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWR-----------------QGE 102
Query: 62 APPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG 121
+ E ++LD N ++ G S+G + VS D K VA+A+ + ++VID+++G
Sbjct: 103 SGQEKVLLDPNGWSKD-GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK 161
Query: 122 KPLVGVTA--SVEWA-GNEALVY--------ITMDEILRPDKAWLHKLEADQSNDICLYH 170
++ + +W ++ Y I +DE H L + S D ++
Sbjct: 162 VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE 221
Query: 171 EKDD-IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHR 229
D L S K+LF+ + Y ++ R+L + VG
Sbjct: 222 RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLL-VKGVGAKYEVHAW 280
Query: 230 GNHFFITRRSDELFNSELLACPVDNTSET--TVLIPHRESVKLQDIQLFIDHLAVYEREG 287
+ F++ + + + ++P S L + + HL++ +
Sbjct: 281 KDRFYV-LTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKD 339
Query: 288 GLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSV 347
++ L G+P+++ V+ + + + ++S TP +
Sbjct: 340 ATSEVRVATLK--GKPVRT------VQLPGVGAASNLMGL-EDLDDAYYVFTSFTTPRQI 390
Query: 348 YDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDP 407
Y + G S L V + Y E+ + ++ DGT++P+ +V+RK+L K DG+ P
Sbjct: 391 YKTSVSTGKSELWAKVDV--PMNPEQYQVEQVFYASKDGTKVPMFVVHRKDL-KRDGNAP 447
Query: 408 LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFT 467
LLYGYG + + + F SS L LD G ++A+A +RGGGE G+ W++ G+ KK+N F
Sbjct: 448 TLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFD 507
Query: 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML 527
DF A AEYL++ Y ++L I G S GGLL+GA + RP+L+ A V AVP +D++ L
Sbjct: 508 DFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHL 567
Query: 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMYSEP 586
+ E+ P E + + +YSP +V+ YP +L+ A +D RV
Sbjct: 568 FGSGRTWIPEYGTAEKP---EDFKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMHA 624
Query: 587 AKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSVGSE 646
KFVA ++ + L + E AGH + + + Y+FL + L + + G
Sbjct: 625 RKFVAAVQNSPGNPATALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVLDVQGAQGGV 684
Query: 647 QS 648
+
Sbjct: 685 AA 686
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Length = 710 | Back alignment and structure |
|---|
Score = 740 bits (1914), Expect = 0.0
Identities = 155/676 (22%), Positives = 273/676 (40%), Gaps = 71/676 (10%)
Query: 2 FAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPD 61
+ S F++G Y+Y G + +
Sbjct: 64 KERMTELYDYPKYSCHFKKGKRYFYFYN-TGLQNQRVLYV----------------QDSL 106
Query: 62 APPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG 121
+ LD N+ ++ G ++ + S D + AY G + T+ + ++ +
Sbjct: 107 EGEARVFLDPNILSDD-GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP 165
Query: 122 KPLVGVTAS-VEWAG-NEALVYITMDE-----------ILRPDKAWLHKLEADQSNDICL 168
L V S + W + + Y + K + H L DQS DI
Sbjct: 166 DVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC 225
Query: 169 YHEKDD-IYSLGLQASESKKFLFIASESKITR--FVFYLDVSKPE-ELRVLTPRVVGVDT 224
D+ + G + S+ +++ ++ ++Y D+ + + + V +D
Sbjct: 226 AEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN 285
Query: 225 ------AASHRGNHFFITRRSDELFNSELLACPVDNTSET--TVLIPHRESVKLQDIQLF 276
++ G F N L+ + E+ VL+P E L+ +
Sbjct: 286 FEGEYDYVTNEGTVFTFKTNRHSP-NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV 344
Query: 277 I-DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE-FIDPVYSIDPSESVFSSRIL 334
+ L + + + L G ++ F V S+ +
Sbjct: 345 RSNFLVLCYLHDVKNTLQLH----------DLATGALLKIFPLEVGSVVGYSGQKKDTEI 394
Query: 335 RFHYSSLRTPPSVYDYDMDMGISVLKKI-ETVLGGFDTNNYFTERKWASASDGTQIPICI 393
+ ++S +P +Y D+ + E + G D ++Y T + + + DGT+IP+ I
Sbjct: 395 FYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFI 454
Query: 394 VYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQ 452
V++K + KLDGS P LYGYG + I P ++ SRL + G + A+A IRGGGE G
Sbjct: 455 VHKKGI-KLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGET 513
Query: 453 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKA 512
W++ G K+N F DF AEYLIK Y + ++L I G S GGLL+ N RPDLF
Sbjct: 514 WHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGC 573
Query: 513 AVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-----NY 567
+A V +D+L + A ++G ++ + ++ YSP+ NVK Y
Sbjct: 574 VIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQY 630
Query: 568 PHILVTAGLNDPRVMYSEPAKFVAKLREM----KTDDNILLFKCELGAGHFSKSGRFERL 623
P +L+ +D RV+ KF+A L+ + + +N LL + AGH + + +
Sbjct: 631 PSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVI 690
Query: 624 REAAFTYTFLMRALSM 639
E + + F+ R L++
Sbjct: 691 EEVSDMFAFIARCLNI 706
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Length = 741 | Back alignment and structure |
|---|
Score = 741 bits (1915), Expect = 0.0
Identities = 167/658 (25%), Positives = 269/658 (40%), Gaps = 51/658 (7%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
+ +K I E P R+G+ +Y+ Q R P
Sbjct: 98 LEKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVRP--------------ADAP 143
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
++LD N A+ G ++ + S D +L+AY+ G + TV + + G P+
Sbjct: 144 VGTKGRVLLDPNTWAKD-GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL 202
Query: 121 GKPLVGVTAS-VEWAGNEALVY---------ITMDEILRPDKAWLHKLEADQSNDICLYH 170
L V S + W GN+AL+Y + WLH+L QS D ++
Sbjct: 203 ADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262
Query: 171 EKDD-IYSLGLQASESKKFLFIASESKITRF--VFYLDVSKPE--ELRVLTPRVVGVDTA 225
+ G S +++ I S V V+ + + L P +
Sbjct: 263 TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF 322
Query: 226 ASHRGNHFFITRRSDELFNSELLACPVDNTSE-TTVLIPHRESVKLQDIQLFIDHLAVYE 284
G+ + D +++ + ++ ++P + L+ + + + L
Sbjct: 323 VDGVGDQLWF-VSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN-LESVGIAGNRLFASY 380
Query: 285 REGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTP 344
++ + L G+P + V + S +SS P
Sbjct: 381 IHDAKSQVLAFDLD--GKPAGA------VSLPGIGSASGLSGRPGDRH-AYLSFSSFTQP 431
Query: 345 PSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDG 404
+V D + + V FD ++ E+ + + DGT++P+ IV RK+ G
Sbjct: 432 ATVLALDPATAKTTPWE--PVHLTFDPADFRVEQVFYPSKDGTKVPMFIVRRKDA---KG 486
Query: 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN 464
P LLYGYG + + P F++ ++ +D G FA+A +RGGGE G W++ G+ KK+N
Sbjct: 487 PLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDKKQN 546
Query: 465 TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT 524
F DFIA E+LI N + L IEG S GGLLIGAV N RPDLF AA AV +D
Sbjct: 547 VFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMD--- 603
Query: 525 TMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMY 583
+ +++G P KE + ++ YSP NV++ +YP ILVT D RV+
Sbjct: 604 MLRFDQFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVVP 663
Query: 584 SEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLP 641
K+ A L+ L + E AGH S +++ E A FL + P
Sbjct: 664 GHSFKYTAALQTAAIGPKPHLIRIETRAGHGSGKPIDKQIEETADVQAFLAHFTGLTP 721
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 7e-29
Identities = 92/565 (16%), Positives = 167/565 (29%), Gaps = 73/565 (12%)
Query: 89 SPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGKPLVGVTASVEWAGNEALVYITMDEI 147
+++ + +KG E + ++ ++ G V + V T
Sbjct: 72 YGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGA-- 129
Query: 148 LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS 207
D+ L+ L+ ++ + + +F ++
Sbjct: 130 -TEDRVALYALDGGGLREL---ARLPGFGFVS--DIRGDLIAGLGFFGGGRVSLFTSNL- 182
Query: 208 KPEELRVLTPRVVGVDTAA-SHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE 266
LRV +A+ S + E + L+ + S + +P ++
Sbjct: 183 SSGGLRVFDSGEGSFSSASISPGMKVTAGLETARE---ARLVTVDPRDGSVEDLELPSKD 239
Query: 267 SVKLQDIQLFI------DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVY 320
+ + LAV R G + GE +++ QG
Sbjct: 240 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-----GERVEAPQG----------- 283
Query: 321 SIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFT-ERK 379
+ V L ++SL TPP + +E L +
Sbjct: 284 --NHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGE-----PLLEGGLPEDLRRSIAGSRLV 336
Query: 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 439
W + DG+++P V + P ++ +G + ++++ SL GF
Sbjct: 337 WVESFDGSRVP-TYVLESG--RAPTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGF--H 391
Query: 440 IAQI--RGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGL 497
+ RG G +W D A A + ++ +L I G S GG
Sbjct: 392 VVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGL--ASELYIMGYSYGGY 449
Query: 498 LIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYS 557
+ L M+P LFKA VA VD + G E +S S
Sbjct: 450 MTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSR--EIM---RSRS 504
Query: 558 P---VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGH- 613
P VD +K P + + N R + + +L + AGH
Sbjct: 505 PINHVDRIKE---P-LALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIP---DAGHA 557
Query: 614 FSKSG-RFERLREAAFTYTFLMRAL 637
+ + L A FL
Sbjct: 558 INTMEDAVKILLPAV---FFLATQR 579
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 8e-26
Identities = 64/345 (18%), Positives = 112/345 (32%), Gaps = 33/345 (9%)
Query: 307 LQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVL 366
+ G+ V+ P + +V +R + +S RT V + D G
Sbjct: 323 PESGELVDAAGPWTEWAATLTVSGTRAV-GVAASPRTAYEVVELDTVTG-RARTIGARHT 380
Query: 367 GGFDTNNYFT-ERKWASASDGTQIPICIVYRKNLVKLDGSD----PLLLYGYGSYEICND 421
D Y + + +A DG +I +Y + G P ++ +G
Sbjct: 381 DPVDPAYYPEPQIRTFTAPDGREIH-AHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVP 439
Query: 422 PAFNSSRLSLLDRGFIFAIAQI--RGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479
+ RG +A + G GR + E + D A A L +
Sbjct: 440 AVLDLDVAYFTSRGI--GVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEE 497
Query: 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 539
+ +L + G SAGG + L + D++ P +D+L T + +
Sbjct: 498 GTADRARLAVRGGSAGGWTAASSL-VSTDVYACGTVLYPVLDLLGWADGGTHDFESRYLD 556
Query: 540 EW-GDPWKE-EFYFYMKSYSP---VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLR 594
G + E Y + +P D V+ P L+ GL DP + +F+ +
Sbjct: 557 FLIGSFEEFPERY---RDRAPLTRADRVRV---P-FLLLQGLEDPVCPPEQCDRFLEAVA 609
Query: 595 EMKTDDNILLFKCELGAGH-FSKSG-RFERLREAAFTYTFLMRAL 637
L F+ G GH F + L + +
Sbjct: 610 GCGVPHAYLSFE---GEGHGFRRKETMVRALEA---ELSLYAQVF 648
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 44/243 (18%), Positives = 78/243 (32%), Gaps = 40/243 (16%)
Query: 407 PLLLY--GYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRG-GGELGRQWYENGKFLKK- 462
P ++ GY + + ++ G+ +RG +G L
Sbjct: 83 PAIVKYHGYNA----SYDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWM 138
Query: 463 ------------KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLF 510
+ + D + E + + ++ + G S GG L A +
Sbjct: 139 TKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-P 197
Query: 511 KAAVAAVPFVDVLTTMLDPTIPLTTAE----WEEWGDPWKEEFYFYMKSY-SP---VDNV 562
KAAVA P++ +D + E + G P E SY D V
Sbjct: 198 KAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRV 257
Query: 563 KAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGH-FSKSGRFE 621
K P +L++ GL D S L K + +++ GH + + + E
Sbjct: 258 KV---P-VLMSIGLIDKVTPPSTVFAAYNHLETKKE---LKVYR---YFGHEYIPAFQTE 307
Query: 622 RLR 624
+L
Sbjct: 308 KLA 310
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 43/260 (16%), Positives = 85/260 (32%), Gaps = 50/260 (19%)
Query: 407 PLLLY--GYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRG----------------GGE 448
P L+ GY S + +L+ + GF +RG G
Sbjct: 109 PALIRFHGYSSN-----SGDWNDKLNYVAAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGH 163
Query: 449 LGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD 508
+ R ++ + ++ F D A ++ ++++ + G S GG L A + P
Sbjct: 164 IIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR 223
Query: 509 LFKAAVAAVPFVDVLTTMLDPTIPLTT----AEWEEWGDPWKE---EFYFYMKSYSPV-- 559
+ V+ PF+ + D + ++ DP E E + +
Sbjct: 224 -VRKVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNL 282
Query: 560 -DNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG 618
+K +L+ GL D S A +++ +I ++ GH G
Sbjct: 283 AKRIKG----DVLMCVGLMDQVCPPST---VFAAYNNIQSKKDIKVYP---DYGHEPMRG 332
Query: 619 RFERLREAAFTYTFLMRALS 638
+ + F++ S
Sbjct: 333 FGDLAMQ------FMLELYS 346
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 2e-11
Identities = 27/208 (12%), Positives = 53/208 (25%), Gaps = 18/208 (8%)
Query: 431 LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIE 490
+ G I +RG + D A + L Y + +
Sbjct: 51 AVGLGCICMTFDLRGHEGYASMRQSVTRA----QNLDDIKAAYDQLASLPYVDAHSIAVV 106
Query: 491 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFY 550
G S GG L + RP + A + + D ++ +
Sbjct: 107 GLSYGGYLSALLTRERPVEWLALRSPALYKDAHWDQPKVSL------NADPDLMDYRRRA 160
Query: 551 FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 610
+ +L+ ND V + + ++ + ++ G
Sbjct: 161 LAPGDNLALAACAQYKGD-VLLVEAENDVIVPHPVMRNYADAFTNARSLTSRVIA----G 215
Query: 611 AGH-FSKSGRFERLREAAFTYTFLMRAL 637
A H S + A +L +
Sbjct: 216 ADHALSVKEHQQEYTRA--LIDWLTEMV 241
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 2e-10
Identities = 35/197 (17%), Positives = 62/197 (31%), Gaps = 14/197 (7%)
Query: 431 LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIE 490
+LDRG A G GE+ G + A + L K + + +
Sbjct: 175 VLDRGMATATFDGPGQGEMFEYKRIAG------DYEKYTSAVVDLLTKLEAIRNDAIGVL 228
Query: 491 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFY 550
GRS GG P A ++ F D+ L+ + + ++ D +E
Sbjct: 229 GRSLGGNYALKSAACEPR-LAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARL 287
Query: 551 FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 610
+ D + P + G++D V S + + N+++ K
Sbjct: 288 HVHAALETRDVLSQIACP-TYILHGVHD-EVPLSFVDTVLELVP--AEHLNLVVEK---D 340
Query: 611 AGHFSKSGRFERLREAA 627
H + E A
Sbjct: 341 GDHCCHNLGIRPRLEMA 357
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 1e-09
Identities = 37/180 (20%), Positives = 56/180 (31%), Gaps = 18/180 (10%)
Query: 463 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDV 522
+ FTD + E +E++ I G S GG + AV + KA + VPF+
Sbjct: 170 RRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKK-AKALLCDVPFLCH 228
Query: 523 LTTMLDPTIPLTTAEWEEW--GDPWKEEFYF----YMKSYSPVDNVKAQNYPHILVTAGL 576
+ AE + KEE F Y + K P L + GL
Sbjct: 229 FRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKI---P-ALFSVGL 284
Query: 577 NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 636
D S A I ++ H G F+ + + F +
Sbjct: 285 MDNICPPST---VFAAYNYYAGPKEIRIYP---YNNHEG-GGSFQAVEQVKFLKKLFEKG 337
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 2e-09
Identities = 32/210 (15%), Positives = 57/210 (27%), Gaps = 24/210 (11%)
Query: 408 LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGEL--GRQWYENGKFLK--KK 463
L L+G + +RGF+ GE ++ ++++ +
Sbjct: 28 LALHGLQGSKEHILALLPG----YAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYR 83
Query: 464 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVL 523
+ L + G S G + +L
Sbjct: 84 VALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLA--------- 134
Query: 524 TTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMY 583
+ P+ + + DP Y P +A +L G D V
Sbjct: 135 --FIGSGFPMKLPQGQVVEDPGVLALY----QAPPATRGEAYGGVPLLHLHGSRDHIVPL 188
Query: 584 SEPAKFVAKLREMKTDDNILLFKCELGAGH 613
+ K + LR + + F E GAGH
Sbjct: 189 ARMEKTLEALRPHYPEGRLARFVEE-GAGH 217
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 34/232 (14%), Positives = 66/232 (28%), Gaps = 23/232 (9%)
Query: 306 SLQGGKSVEFIDPVYSIDPSESVFSSRILRF------HYSSLRTPPSVYDYDMDMGISVL 359
S+ + + +++ + P S
Sbjct: 390 SIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD----- 444
Query: 360 KKIETVLGGFDTNNYFTERKWAS------ASDGTQIPICIVYRKNLVKLDGSDPLLLYGY 413
++I+ + + N + D + ++ + PLL+ Y
Sbjct: 445 QEIKILEENKELENALKNIQLPKEEIKKLEVDEITLWYKMILPPQFDR-SKKYPLLIQVY 503
Query: 414 G---SYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK-KKNTFTDF 469
G S + + A N G + A+ RG G + + K D
Sbjct: 504 GGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKL-LYAVYRKLGVYEVEDQ 562
Query: 470 IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 521
I I+ + ++++ I G S GG + L LFK +A P
Sbjct: 563 ITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSS 614
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 84/518 (16%), Positives = 169/518 (32%), Gaps = 126/518 (24%)
Query: 87 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETG-----TPVGKPLV--GVTASV-------- 131
++SP V++ ++VID+ +G T G + G+ V
Sbjct: 158 KLSPKGGFVSFIRG------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRH 211
Query: 132 ---EWAGN-EALVYITMDEILRPDKAWLHKLEADQSNDICL-YH---EKDDIYSLGLQAS 183
WA + A+ Y +DE P +++ AD+++ I Y + + L
Sbjct: 212 TGYWWAPDDSAIAYARIDESPVPV-QKRYEVYADRTDVIEQRYPAAGDANVQVKL----- 265
Query: 184 ESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFIT---RRSD 240
+ +E T+ ++D+ K +++ + RV D H R
Sbjct: 266 ----GVISPAEQAQTQ---WIDLGKEQDIYL--ARVNWRD------PQHLSFQRQSRDQK 310
Query: 241 ELFNSELLACPVDNTSETTVLIPHRES----VKLQDIQLFID--------------HLAV 282
+L +L+ + + + + E+ V L + F+D HL
Sbjct: 311 KL---DLVEVTLASNQQRVL---AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYR 364
Query: 283 YEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFI----DP----VYSIDPSES------- 327
+ +G +T V E L + F +Y++
Sbjct: 365 IDSKGKAAALTHGNWS-VDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK 423
Query: 328 -------VFSS--RILRFHYSSLRTPPSVYDYDMDMGISV------LKKIETVLGGFDTN 372
F+ + +S+ TPP + + + L + +
Sbjct: 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEKIATLVENDLADPKHPYARYREA 483
Query: 373 NYFTERKWASASDG-TQIPICIVYRKNLVKLDGSD--PLLLYGYG---SYEICNDPAFNS 426
E +A+DG T + ++ D + P+ +Y YG S + +
Sbjct: 484 QRPVEFGTLTAADGKTPLNYSVIKPAGF---DPAKRYPVAVYVYGGPASQTVTDSWPGRG 540
Query: 427 SRL---SLLDRGFIFAIAQI--RGGGELGRQWYENGKFLK-KKNTFTDFIACAEYLIKNC 480
L L +G++ + + RG GR + + K D + +L +
Sbjct: 541 DHLFNQYLAQQGYV--VFSLDNRGTPRRGRDF-GGALYGKQGTVEVADQLRGVAWLKQQP 597
Query: 481 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518
+ ++ ++G S GG + +L D + VA P
Sbjct: 598 WVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAP 635
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 5e-08
Identities = 68/523 (13%), Positives = 156/523 (29%), Gaps = 164/523 (31%)
Query: 136 NEALVYITMDEILRPDKAWL----HKLEADQSNDICLYHE-KDDIYSLGLQASESKKFLF 190
E +V ++E+LR + +L + S +Y E +D +Y ++++ F
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY------NDNQVF-- 126
Query: 191 IASESKITRFVFYLDVSKP-EELRVLTPRVV--G----------VDTAASHR------GN 231
++ ++R YL + + ELR V+ G +D S++
Sbjct: 127 --AKYNVSRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 232 HFFIT----RRSDELFN-----SELLACPVDNTSETTVLIPHR-ESVKLQDIQLF----- 276
F++ + + + + S+ + I R S++ + +L
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 277 ------IDHLAVYERE------GGLQKITTYRLPAVGEPLKSLQGGK-SVEFIDPVYSID 323
+ + V + + + T R V + L + S++ + D
Sbjct: 244 ENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 324 PSESVFSS--------------RILRFHYS----SLRTPPSVYDYDMDMGISVLKK-IET 364
+S+ S S+R + +D + L IE+
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 365 VLGGFDTN---NYFTERKWASASDGTQIP---ICIV----------------YRKNLVKL 402
L + F + + IP + ++ ++ +LV+
Sbjct: 362 SLNVLEPAEYRKMF--DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 403 DGSDPLLLYGYGSY-----EICNDPA--------------FNSSRLSLL-DRGFIFA--- 439
+ Y ++ N+ A F+S L + ++
Sbjct: 420 Q-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 440 --IAQIRGGGE--LGRQWYENGKFLKKK---------------NTFTDFIACAEYLIKNC 480
+ I L R + + +FL++K NT Y+ N
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 481 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVL 523
+ + ++ + + +L + + D+L
Sbjct: 539 PKYERLVN--------AILDFLPKIEENLICS-----KYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 8e-07
Identities = 95/572 (16%), Positives = 157/572 (27%), Gaps = 175/572 (30%)
Query: 155 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV 214
L E ++ +D S+ L E + T +F+ +SK EE
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--- 77
Query: 215 LTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQ-DI 273
+ + V R N+ F+ +E + T + I R+ +L D
Sbjct: 78 MVQKFVE----EVLRINYKFLMSP----IKTE----QRQPSMMTRMYIEQRD--RLYNDN 123
Query: 274 QLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQ--------G----GKSVEFIDPVYS 321
Q+F + V R Q R + L L+ G GK+ +D V
Sbjct: 124 QVFAKY-NVS-RL---QPYLKLR-----QALLELRPAKNVLIDGVLGSGKTWVALD-VCL 172
Query: 322 IDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWA 381
+ +I + + +P +VL+ ++ +L D N W
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPE-----------TVLEMLQKLLYQIDPN-------WT 214
Query: 382 SASDGTQ-IPICI--------------VYRKNLVKLDG-SDPLLLYGYGSYEICNDPAFN 425
S SD + I + I Y L+ L + + N AFN
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA---------KAWN--AFN 263
Query: 426 -SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484
S ++ L R + + T T L+K C
Sbjct: 264 LSCKILLTTRF--KQVTDFLSAATTTHISLD-----HHSMTLTPDEV-KSLLLKYLDCRP 315
Query: 485 EKLCIEGRSAGGL---LIGAVL---NMRPDLFKAAVAAVPFVDVLTTM-------LDPT- 530
+ L E + +I + D +K D LTT+ L+P
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-----VNCDKLTTIIESSLNVLEPAE 370
Query: 531 ----------------IPLTTAE--WEE--WGDP----------------WKEEFYF--- 551
IP W + D KE
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 552 -YMKSYSPVDNVKAQNYPH-ILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN-ILLFKCE 608
Y++ ++N A H +V Y+ P F + D
Sbjct: 431 IYLELKVKLENEYAL---HRSIVDH--------YNIPKTFDSDDLIPPYLDQYFYSH--- 476
Query: 609 LGAGHFSK---SGRFERLREAAFTYTFLMRAL 637
+G H R R + FL + +
Sbjct: 477 IGH-HLKNIEHPERMTLFRMVFLDFRFLEQKI 507
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 6e-08
Identities = 34/197 (17%), Positives = 73/197 (37%), Gaps = 27/197 (13%)
Query: 337 HYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDG-TQIPICIVY 395
+ S P V ++ G L + + G+ T A+DG T + +
Sbjct: 418 IFQSPTVPRKVTVTNIGKGSHTLLEAKNPDTGYAMPEIRTGT--IMAADGQTPLYYKLTM 475
Query: 396 RKNLVKLDGSD--PLLLYGYG---SYEICNDPAFNSSRL----SLLDRGFIFAIAQI--R 444
+ D + P+++Y YG + + + SS + +G+ + + R
Sbjct: 476 PLHF---DPAKKYPVIVYVYGGPHAQLVTK--TWRSSVGGWDIYMAQKGYA--VFTVDSR 528
Query: 445 GGGELGRQWYENGKFLKKK---NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGA 501
G G + + + ++ D + ++L + +++ + G S GG +
Sbjct: 529 GSANRGAAFE---QVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTN 585
Query: 502 VLNMRPDLFKAAVAAVP 518
++ D+FK VA P
Sbjct: 586 LMLTHGDVFKVGVAGGP 602
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 1e-07
Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 32/228 (14%)
Query: 401 KLDGSDPLLLYGYGSYEICNDPAFNSSRLSLL-DRGFIFAIAQIRGGGELGRQWYENGKF 459
G P ++ +G+ R SLL +GF +L +
Sbjct: 169 PEPGPFPGIVDMFGT-----GGGLLEYRASLLAGKGFAVMALAYYNYEDLPKTMETLH-- 221
Query: 460 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519
F YL+ + + + G S GG L ++ + + A V
Sbjct: 222 ------LEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSV 275
Query: 520 VDVLTTML-----DPTIPLTTAEWEEWGDPWKEEFYFY--------MKSYSPVDNVKAQN 566
+V T+ P + + + D + + KS+ PV+ ++
Sbjct: 276 ANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAES-- 333
Query: 567 YPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHF 614
L G +D A K + + GH+
Sbjct: 334 --TFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYP-ETGHY 378
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 30/145 (20%), Positives = 48/145 (33%), Gaps = 10/145 (6%)
Query: 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYG---SYEICNDPAFNSSRLSLLDRGFIFA 439
+ T+ ++ + K PLLL Y S + N + I A
Sbjct: 480 ILNETKFWYQMILPPHFDK-SKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVA 538
Query: 440 IAQIRGGGELGRQWYENGKFLKKK---NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGG 496
RG G G + + ++ D I A K + +++ I G S GG
Sbjct: 539 SFDGRGSGYQGDKIM---HAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGG 595
Query: 497 LLIGAVLNMRPDLFKAAVAAVPFVD 521
+ VL +FK +A P
Sbjct: 596 YVTSMVLGSGSGVFKCGIAVAPVSR 620
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 34/214 (15%), Positives = 64/214 (29%), Gaps = 31/214 (14%)
Query: 328 VFSSRILRF--HYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWAS--- 382
FS + F P D KK+ + +R+
Sbjct: 416 SFSHSMDFFLLKCEGPGVPMVTVHNTTDK-----KKMFDLETNEHVKKAINDRQMPKVEY 470
Query: 383 ---ASDGTQIPICIVYRKNLVKLDGSD--PLLLYGYG---SYEICNDPAFNSSRLSLLDR 434
D +P+ I+ + PLLL G S + + + +
Sbjct: 471 RDIEIDDYNLPMQILKPATF---TDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSH 527
Query: 435 GFIFAIAQIRGGGELGRQWYENGKFLKKK---NTFTDFIACAEYLIKNCYCTKEKLCIEG 491
G + RG G G + ++++ D + ++K Y + ++ + G
Sbjct: 528 GAVVVKCDGRGSGFQGTKLL---HEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFG 584
Query: 492 RSAGGLLIGAVLNMRPD----LFKAAVAAVPFVD 521
+ GG L +L + + F A P D
Sbjct: 585 KDYGGYLSTYILPAKGENQGQTFTCGSALSPITD 618
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 6e-07
Identities = 32/236 (13%), Positives = 66/236 (27%), Gaps = 32/236 (13%)
Query: 393 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLL-DRGFIFAIAQIRGGGELGR 451
+ L G P ++ +G R SLL GF +L
Sbjct: 145 VRATLFLPPGPGPFPGIIDIFGI-----GGGLLEYRASLLAGHGFATLALAYYNFEDLPN 199
Query: 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 511
F Y++++ + + G S G + ++ + ++
Sbjct: 200 NMDNIS--------LEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSA 251
Query: 512 AAVAAVPFVDVLT--TMLDPTIP-----LTTAEWEEWGDPWKEEFY------FYMKSYSP 558
+ T +IP L + G + + S P
Sbjct: 252 TVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIP 311
Query: 559 VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHF 614
++ + IL+ G +D A+ V++ + + + G GH+
Sbjct: 312 IEKAQG----PILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYP-GTGHY 362
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 8e-07
Identities = 38/253 (15%), Positives = 67/253 (26%), Gaps = 48/253 (18%)
Query: 371 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLL--LYGYGSYEICNDPAFNSSR 428
+ F + G +IP + K++ D PL+ L+G G N +R
Sbjct: 140 IIDDFLAFTFKDPETGVEIPYRLFVPKDVNP-DRKYPLVVFLHGAGERGTDNYLQVAGNR 198
Query: 429 LSLL--------DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 480
+++ Q + + + I L+
Sbjct: 199 GAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEY 258
Query: 481 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEE 540
+ ++ I G S GG + P+LF AA+ DV
Sbjct: 259 NIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVS----------------- 301
Query: 541 WGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 600
++ + I V +DP V V KL E+
Sbjct: 302 -----------KVERIKDI---------PIWVFHAEDDPVVPVENSRVLVKKLAEIGGKV 341
Query: 601 NILLFKCELGAGH 613
++ H
Sbjct: 342 RYTEYEKGFMEKH 354
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 6e-05
Identities = 36/257 (14%), Positives = 64/257 (24%), Gaps = 49/257 (19%)
Query: 403 DGSDPLLLY--GYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 460
D + L+ G + + F S + + + + G G+ Q
Sbjct: 156 DKAQDTLIVVGGGDTS---REDLFYMLGYSGWEHDYNVLMVDLPGQGKNPNQGL------ 206
Query: 461 KKKNTFTDFI-ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519
F A ++ EK+ I G S GG + KA +A+ P
Sbjct: 207 ----HFEVDARAAISAILDWYQAPTEKIAIAGFSGGGYFTAQAVEKDKR-IKAWIASTPI 261
Query: 520 VDVLTTML-------------------DPTIPLTTAEWEEWGDPWK------EEFYFYMK 554
DV T AE W+ +
Sbjct: 262 YDVAEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVL 321
Query: 555 SYSP---VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 611
+ + + L G + + + ++ D + F E GA
Sbjct: 322 EQAQIVDYNKIDVP----SLFLVGAGEDSELMRQSQVLYDNFKQRGIDVTLRKFSSESGA 377
Query: 612 GHFSKSGRFERLREAAF 628
+ F + F
Sbjct: 378 DAHCQVNNFRLMHYQVF 394
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 24/178 (13%), Positives = 47/178 (26%), Gaps = 19/178 (10%)
Query: 431 LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIE 490
L + G + + A L Y ++ +
Sbjct: 217 LAKHDIAMLTVDMPSVGYSSKYPLTE-------DYSRLHQAVLNELFSIPYVDHHRVGLI 269
Query: 491 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD--PTIPLTTAEW--EEWGDPWK 546
G GG + + + + KA V + + +P + G
Sbjct: 270 GFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVLASRLGKSVV 329
Query: 547 EEFYFY--MKSYS----PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKT 598
+ + M ++S + + P IL + DP YS+ + VA
Sbjct: 330 DIYSLSGQMAAWSLKVQGFLSSRKTKVP-ILAMSLEGDPVSPYSD-NQMVAFFSTYGK 385
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 Length = 615 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 8e-04
Identities = 30/165 (18%), Positives = 52/165 (31%), Gaps = 18/165 (10%)
Query: 371 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLL----YGYGSYEICNDPAFNS 426
+N+Y DG ++ ++ K + P++L Y
Sbjct: 20 SNDYIKREVMIPMRDGVKL-HTVIVLP---KGAKNAPIVLTRTPYDASGRTERLASPHMK 75
Query: 427 SRLS-----LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF-----TDFIACAEYL 476
LS ++ G+I +RG + N TD ++L
Sbjct: 76 DLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWL 135
Query: 477 IKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 521
+KN + K+ + G S G + L K AV P +D
Sbjct: 136 VKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMID 180
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 648 | |||
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.93 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.92 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.91 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.9 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.89 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.89 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.89 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.88 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.88 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.88 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.88 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.87 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.87 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.87 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.87 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.87 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.87 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.86 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.86 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.86 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.86 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.85 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.85 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.85 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.85 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.85 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.85 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.84 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.84 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.84 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.84 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.84 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.84 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.84 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.84 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.83 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.83 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.83 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.83 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.83 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.83 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.82 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.82 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.82 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.82 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.81 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.81 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.81 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.81 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.8 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.8 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.8 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.8 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.8 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.79 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.79 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.78 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.78 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.78 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.78 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.77 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.77 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.76 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.76 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.75 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.75 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.74 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.74 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.74 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.74 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.74 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.74 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.74 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.73 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.73 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.73 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.72 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.71 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.71 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.71 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.71 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.71 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.7 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.7 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.7 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.7 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.7 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.7 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.7 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.7 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.69 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.68 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.68 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.68 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.68 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.68 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.67 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.67 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.67 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.66 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.66 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.66 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.65 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.65 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.65 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.65 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.64 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.64 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.64 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.64 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.64 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.64 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.63 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.63 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.63 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.63 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.62 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.62 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.62 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.62 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.62 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.61 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.61 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.61 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.61 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.61 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.61 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.61 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.6 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.6 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.6 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.6 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.6 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.59 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.59 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.59 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.59 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.59 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.59 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.59 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.58 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.58 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.58 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.56 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.56 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.56 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.55 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.55 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.55 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.54 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.54 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.54 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.53 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.53 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.53 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.53 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.53 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.53 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.52 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.52 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.52 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.52 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.52 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.51 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.51 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.51 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.51 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.51 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.51 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.51 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.51 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.49 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.49 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.49 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.49 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.49 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.48 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.48 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.48 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.47 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.47 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.47 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.47 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.46 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.46 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.46 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.46 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.45 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.43 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.15 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.42 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.42 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.42 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.42 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.41 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.41 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.41 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.41 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.4 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.4 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.39 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.38 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.37 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.36 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.36 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.35 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.35 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.33 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.33 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.31 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.31 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.28 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.27 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.26 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.26 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.26 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.22 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.21 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.21 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.17 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 99.17 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.15 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.15 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.15 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 99.14 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.12 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.11 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 99.1 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.1 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 99.09 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 99.09 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 99.09 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 99.08 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.08 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 99.06 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 99.05 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 99.04 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 99.04 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 99.03 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.02 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.01 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.0 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 98.98 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.94 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.93 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.93 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.91 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.9 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.89 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.88 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.88 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.87 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.86 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.85 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.83 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.81 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.81 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.8 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.79 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.79 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.78 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.78 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.78 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.77 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.75 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.74 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.74 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.74 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.73 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.73 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.73 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.73 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.72 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.71 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.71 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.7 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.69 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.69 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.67 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.66 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.65 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.64 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 98.64 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.63 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.63 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.61 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.6 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.6 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.59 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.59 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.59 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.59 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.58 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.57 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.56 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.55 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.55 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.55 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.54 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.52 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.49 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.47 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.46 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.43 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.42 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.42 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.41 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.41 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.41 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.4 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.4 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.4 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.39 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.39 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.39 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.38 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.38 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.37 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.37 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.37 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.36 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.34 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.33 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.33 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.32 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.32 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.31 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.31 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.31 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.3 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.3 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.3 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.29 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.29 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.29 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.27 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.25 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.25 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.24 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.23 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.22 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.22 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.21 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.21 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.2 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.2 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.19 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.18 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.17 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.17 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.16 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.16 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.16 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 98.16 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.15 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.14 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.13 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.13 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.13 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.1 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.1 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.09 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.07 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 98.07 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.07 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.06 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.05 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.05 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.03 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.03 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.02 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.01 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.01 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.99 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.98 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.94 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.93 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.93 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.92 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.91 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.91 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.91 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.91 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.89 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.86 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 97.86 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.86 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.84 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.84 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.83 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.82 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.8 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.79 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.78 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.76 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.75 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.73 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.72 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.71 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 97.68 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.67 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.66 | |
| 4ebb_A | 472 | Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2 | 97.64 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.64 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.6 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.58 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.58 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 97.58 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.56 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.56 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.56 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.55 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.54 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.53 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 97.51 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.51 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 97.48 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.48 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.46 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.46 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.45 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.45 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.45 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.45 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 97.44 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 97.42 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.41 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 97.4 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.4 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.39 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.34 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.32 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.31 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 97.24 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.22 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.21 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 97.21 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.2 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.19 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.19 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.18 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.14 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.13 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.13 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 97.12 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.12 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.08 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.08 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.03 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.0 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.96 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 96.93 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.9 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.87 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.87 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.84 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 96.8 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.75 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 96.72 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 96.67 | |
| 1gxs_A | 270 | P-(S)-hydroxymandelonitrIle lyase chain A; inhibit | 96.64 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.61 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.6 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.6 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 96.59 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.52 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.51 | |
| 4az3_A | 300 | Lysosomal protective protein 32 kDa chain; hydrola | 96.48 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 96.43 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.42 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 96.41 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 96.41 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.41 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.37 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.29 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.28 | |
| 1tib_A | 269 | Lipase; hydrolase(carboxylic esterase); 1.84A {The | 96.26 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.25 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.25 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 96.14 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 96.12 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.08 |
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-83 Score=724.52 Aligned_cols=605 Identities=27% Similarity=0.474 Sum_probs=513.1
Q ss_pred CHHHHhhccCCCCCCCCeEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCc
Q 006375 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGF 80 (648)
Q Consensus 1 ~~~~~~~r~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~ 80 (648)
|++||++|+.+++.++|.++|+|+||+++.++++|+++||+... ++++||||+|+++++ ++
T Consensus 68 l~~~~~~~~~~~~~~~p~~~g~~~y~~~~~~~~~~~~~~r~~~~------------------~~~~vllD~n~la~~-~~ 128 (693)
T 3iuj_A 68 IKEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQEG------------------KPAEVFLDPNTLSPD-GT 128 (693)
T ss_dssp HHHHHHHHSCCCEECCCEEETTEEEEEEECSSCSSCEEEEECTT------------------SCCEEEECGGGGSTT-SC
T ss_pred HHHHHHHhhccccCCCCEEECCEEEEEEEcCCCceeEEEEeCCC------------------CCcEEEEehhhccCC-Cc
Confidence 57899999999999999999999999999999999999997532 467999999999986 67
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCc-cceeEEecCC-eEEEEEeCCC--------CCC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE-ALVYITMDEI--------LRP 150 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~-~~~~~WspDg-~l~y~~~~~~--------~~~ 150 (648)
+.+.+++|||||++|||+.+..|+++.+|+++|++||+.+.+.++++ ...++|+ || +|+|++.+.. +++
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~ 207 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ 207 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence 89999999999999999999999999999999999999887777766 5779999 99 9999998754 678
Q ss_pred ceEEEEECCCCCCCcEEEEeecC--CCeEEEEEeCCCCcEEEEEEccccc-cEEEEEECCCCC-ceeEeeecccceeeeE
Q 006375 151 DKAWLHKLEADQSNDICLYHEKD--DIYSLGLQASESKKFLFIASESKIT-RFVFYLDVSKPE-ELRVLTPRVVGVDTAA 226 (648)
Q Consensus 151 ~~l~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~s~Dg~~l~~~~~~~~~-~~l~~~dl~~~~-~~~~l~~~~~~~~~~~ 226 (648)
.+||+|++++++.++++++++.+ +.+..++.|||||++|++.+.+... ++||++|++++. .++.+..+.....+.+
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~ 287 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLV 287 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEE
T ss_pred cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEE
Confidence 89999999999888899998865 5567789999999999998766544 699999998874 3777877766555569
Q ss_pred eecCCEEEEEeccCCCCCcEEEEEeCCCCCccee--EecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcc
Q 006375 227 SHRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPL 304 (648)
Q Consensus 227 s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~ 304 (648)
+++|++|||+++. ++++++|++++++++....| ++++.... + +++++++++++...+++..+|++++++ ++..
T Consensus 288 ~~~g~~l~~~t~~-~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~-~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~ 362 (693)
T 3iuj_A 288 DNKGSTLYLLTNR-DAPNRRLVTVDAANPGPAHWRDLIPERQQV-L-TVHSGSGYLFAEYMVDATARVEQFDYE--GKRV 362 (693)
T ss_dssp EEETTEEEEEECT-TCTTCEEEEEETTSCCGGGCEEEECCCSSC-E-EEEEETTEEEEEEEETTEEEEEEECTT--SCEE
T ss_pred eccCCEEEEEECC-CCCCCEEEEEeCCCCCccccEEEecCCCCE-E-EEEEECCEEEEEEEECCeeEEEEEECC--CCee
Confidence 9999999999997 56789999999987554334 77776654 5 999999999999999999999999887 4432
Q ss_pred cccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCcceEEEEEeCC
Q 006375 305 KSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASAS 384 (648)
Q Consensus 305 ~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 384 (648)
+.+.+|+.. .+.+++.+++++.++|.++|+++|+++|.+|+.+++.++++. ....+++..+.++++++++.
T Consensus 363 ------~~l~~p~~~-~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~--~~~~~~~~~~~~~~~~~~~~ 433 (693)
T 3iuj_A 363 ------REVALPGLG-SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRA--SAAPFKPEDYVSEQRFYQSK 433 (693)
T ss_dssp ------EEECCSSSS-EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEEC--CCSSCCGGGEEEEEEEEECT
T ss_pred ------EEeecCCCc-eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEe--CCCCcChhhCeeEEEEEecC
Confidence 345566543 344566778899999999999999999999999988655443 22357778889999999999
Q ss_pred CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCC
Q 006375 385 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN 464 (648)
Q Consensus 385 ~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~ 464 (648)
||.+|++++++|++. ..+++.|+||++|||++....+.|...++.|+++||+|+++|+||+|++|+.|+.++...++.+
T Consensus 434 dg~~i~~~l~~p~~~-~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 512 (693)
T 3iuj_A 434 DGTRVPLIISYRKGL-KLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQN 512 (693)
T ss_dssp TSCEEEEEEEEESSC-CCSSCCCEEEECCCCTTCCCCCCCCHHHHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHH
T ss_pred CCcEEEEEEEecCCC-CCCCCccEEEEECCCCCcCCCCccCHHHHHHHHCCCEEEEEeCCCCCccCHHHHHhhhhhcCCC
Confidence 999999999999986 5678899999999999998899999988999999999999999999999999999999999999
Q ss_pred cHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCC
Q 006375 465 TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP 544 (648)
Q Consensus 465 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~ 544 (648)
.++|++++++||++++++|++||+|+|+||||++++++++++|++|+|+|+.+|++|+..++. .+.....+.+||+|
T Consensus 513 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~---~~~~~~~~~~~g~p 589 (693)
T 3iuj_A 513 VFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHT---FTAGTGWAYDYGTS 589 (693)
T ss_dssp HHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGGG---SGGGGGCHHHHCCT
T ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhcc---CCCchhHHHHcCCc
Confidence 999999999999999999999999999999999999999999999999999999999887642 22222233678999
Q ss_pred CCHHH-HHHHHcCCccccCCC-CCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHH
Q 006375 545 WKEEF-YFYMKSYSPVDNVKA-QNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFER 622 (648)
Q Consensus 545 ~~~~~-~~~~~~~sp~~~~~~-~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 622 (648)
.+++. ++++.++||++++++ +++||+||+||++|++||++++++|+++|++++.....+.+...+++||+........
T Consensus 590 ~~~~~~~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 669 (693)
T 3iuj_A 590 ADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKL 669 (693)
T ss_dssp TSCHHHHHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSCTHHHHHHHHHHHHHCCSSSCEEEEEEC-------CHHHHH
T ss_pred cCHHHHHHHHHhcCHHHhhcccCCCCceeEEecCCCCCCChhHHHHHHHHHHhhCCCCCCEEEEEeCCCCCCCcccHHHH
Confidence 87776 888999999999999 8999999999999999999999999999999853223345555568999877665667
Q ss_pred HHHHHHHHHHHHHhcCCCCCC
Q 006375 623 LREAAFTYTFLMRALSMLPSV 643 (648)
Q Consensus 623 ~~~~~~~~~fl~~~l~~~~~~ 643 (648)
.+..+++++||.++||....|
T Consensus 670 ~~~~~~~~~fl~~~l~~~~~~ 690 (693)
T 3iuj_A 670 IEQSADIYAFTLYEMGYRELP 690 (693)
T ss_dssp HHHHHHHHHHHHHHTTCSSCS
T ss_pred HHHHHHHHHHHHHHcCCCCCC
Confidence 778889999999999987443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-82 Score=721.78 Aligned_cols=620 Identities=42% Similarity=0.725 Sum_probs=529.0
Q ss_pred CHHHHhhccCCCCCCCCeEeCCEEEEEEecCCceEEEEEEEecC--CCCCCCCccccCCCCCCCC--CceEEEecccccC
Q 006375 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIH--NNEAPPSVHDTMETGPDAP--PEHLILDENVKAE 76 (648)
Q Consensus 1 ~~~~~~~r~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~--~~~~lld~n~~~~ 76 (648)
|++||++|+.+++.|+|.++|+|+||+++.+|++++++||++.. . .+ .+++|||+|++++
T Consensus 106 l~~e~~~~~~~~~~~~p~~~g~~~yy~~~~~g~~~~vl~r~~~~~~~----------------~~~~~~~vlld~n~~a~ 169 (751)
T 2xe4_A 106 IYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCRVFTDKEP----------------GDVAAEEVIIDVNQVAE 169 (751)
T ss_dssp HHHHHHHTSCSSEECCCEEETTEEEEEEECTTCCSCEEEEEETTSCT----------------TCTTTCEEEEEHHHHTT
T ss_pred HHHHHHHhcccccCCCCeEECCEEEEEEECCCCceeEEEEEcCCCCC----------------CCCcCCEEEechhHhcc
Confidence 58999999999999999999999999999999999999999852 1 13 5799999999999
Q ss_pred CCCcEEEeeEEeC-CCCCEEEEEEeCCCCeEEEEEEEECCCC-CeeeccccCccceeEEecCC-eEEEEEeCCCCCCceE
Q 006375 77 GRGFYSVGCFQVS-PDNKLVAYAEDTKGDEIYTVYVIDIETG-TPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKA 153 (648)
Q Consensus 77 ~~~~~~~~~~~~S-PDG~~la~~~~~~G~e~~~l~v~dl~~g-~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l 153 (648)
+++++.++.++|| |||++|||+.+..|+++.+||++|+++| +.+.+.+++...+++||||| +|+|++.+...++.+|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 8888899999999 9999999999999999999999999999 76554555556679999999 9999998766667899
Q ss_pred EEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ce--eEeeecccceeeeEe-ec
Q 006375 154 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-EL--RVLTPRVVGVDTAAS-HR 229 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~--~~l~~~~~~~~~~~s-~d 229 (648)
|++++++++.++++++++.+..+..++.|||||++|++.+.+...++||++|++++. .+ +.++++..+..+.++ ++
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence 999999987677889987776777889999999999999887778999999998864 35 777766555555555 55
Q ss_pred CCEEEEEeccCCCCCcEEEEEeCCCCCccee-EecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCC-----CCCc
Q 006375 230 GNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA-----VGEP 303 (648)
Q Consensus 230 g~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~-----~g~~ 303 (648)
|+.|||.++.+++.+++|+++++++++..+. ++++..+..+.++.++++++++..+.++..+|++++++. .++.
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~ 409 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGT 409 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTT
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCc
Confidence 9999999998436789999999875333344 677777777889999999999999999999999999721 1332
Q ss_pred -ccccCCCceeecCCCeeeeeC-CCC--cccccEEEEEEeeCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCcceEEE
Q 006375 304 -LKSLQGGKSVEFIDPVYSIDP-SES--VFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERK 379 (648)
Q Consensus 304 -~~~l~~~~~i~~~~~~~~v~~-~~~--~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (648)
+ +.+.+|+..+.+.. .+. +++++.++|.++|+++|+++|.+|+.+++.++++..+..+.+++..+.++++
T Consensus 410 ~~------~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 483 (751)
T 2xe4_A 410 GL------REVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGGFDAANYKVERR 483 (751)
T ss_dssp CC------EECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEEECCCCTTCCGGGEEEEEE
T ss_pred cc------eEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEeccccccCCCccceEEEEE
Confidence 2 34556554332221 122 5678889999999999999999999998866555333323577778889999
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhh-ccc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE-NGK 458 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~-~~~ 458 (648)
++++.||.+|++++++|++. ..+++.|+||++|||++....+.|...++.|+++||+|+++|+||+|++|+.|+. ++.
T Consensus 484 ~~~s~dG~~i~~~l~~p~~~-~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~G~~~~~~~~~ 562 (751)
T 2xe4_A 484 FATAPDQTKIPLSVVYHKDL-DMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDRGMIFAIAHIRGGSELGRAWYEIGAK 562 (751)
T ss_dssp EEECTTCCEEEEEEEEETTS-CTTSCCCEEEECCCCTTCCCCCCCCGGGHHHHTTTCEEEEECCTTSCTTCTHHHHTTSS
T ss_pred EEECCCCcEEEEEEEcCCCC-CCCCCccEEEEECCCCCcCCCCcchHHHHHHHhCCcEEEEEeeCCCCCcCcchhhcccc
Confidence 99999999999999999886 5567899999999999988888898888999999999999999999999999999 888
Q ss_pred ccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccc
Q 006375 459 FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW 538 (648)
Q Consensus 459 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 538 (648)
..++.+.++|++++++||++++++|++||+|+|+|+||++++++++++|++|+|+|+.+|++|+..++.....++....|
T Consensus 563 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 642 (751)
T 2xe4_A 563 YLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGEW 642 (751)
T ss_dssp GGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCHHHHHTCTTSTTHHHHT
T ss_pred ccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeCCcchHHhhhcccCcccchhhH
Confidence 88888999999999999999999999999999999999999999999999999999999999998877666667666677
Q ss_pred cccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCc
Q 006375 539 EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG 618 (648)
Q Consensus 539 ~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~ 618 (648)
.+||+|.+++.+.++.++||+++++++++||+||+||++|.+||++++.+++++|+.++++.+++++...+++||+....
T Consensus 643 ~~~g~p~~~~~~~~~~~~sp~~~~~~~~~Pp~Lii~G~~D~~vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~ 722 (751)
T 2xe4_A 643 EEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMVQCGLHDPRVAYWEPAKWVSKLRECKTDNNEILLNIDMESGHFSAKD 722 (751)
T ss_dssp TTTCCTTSHHHHHHHHHHCTGGGCCSSCCCEEEEEEETTCSSSCTHHHHHHHHHHHHHCCSCCCEEEEEETTCCSSCCSS
T ss_pred HHcCCCCCHHHHHHHHhcChhhhhccCCCCceeEEeeCCCCCCCHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCcCC
Confidence 88899988888888999999999999999889999999999999999999999999998887778887767999988766
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCC
Q 006375 619 RFERLREAAFTYTFLMRALSMLPSV 643 (648)
Q Consensus 619 ~~~~~~~~~~~~~fl~~~l~~~~~~ 643 (648)
+.+.++..+.+++||.++|+..+.+
T Consensus 723 ~~~~~~~~~~~~~Fl~~~l~~~~~~ 747 (751)
T 2xe4_A 723 RYKFWKESAIQQAFVCKHLKSTVRL 747 (751)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCG
T ss_pred hhHHHHHHHHHHHHHHHHhCCCchh
Confidence 6677777888999999999987654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-76 Score=668.76 Aligned_cols=605 Identities=25% Similarity=0.392 Sum_probs=506.2
Q ss_pred CHHHHhhccCCCCCCCCeEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCc
Q 006375 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGF 80 (648)
Q Consensus 1 ~~~~~~~r~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~ 80 (648)
|+++|++++..++.+.|.++|+|+||.++.+++.++++||+...+ +.+++|+|+|+++++ +.
T Consensus 63 l~~~~~~~~~~~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~lld~~~l~~~-~~ 124 (710)
T 2xdw_A 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLE-----------------GEARVFLDPNILSDD-GT 124 (710)
T ss_dssp HHHHHHHHHCSCEECCCEEETTEEEEEEECSSCSSCEEEEESSTT-----------------SCCEEEECGGGGCTT-SC
T ss_pred HHHHHHHhhccccCCCCEEECCEEEEEEEcCCceEEEEEEEcCCC-----------------CCcEEEECHHHhccC-CC
Confidence 467888888889999999999999999999999999999987542 467899999999874 45
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCc-cceeEEecCC-eEEEEEeCCC-----------
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE-ALVYITMDEI----------- 147 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~-~~~~~WspDg-~l~y~~~~~~----------- 147 (648)
..+..++|||||++|||+.+.+|+++.+|+++|+++|+.+...+.+. ...++||||| .|+|++.+..
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 68999999999999999999999999999999999999876555443 4569999999 9999987654
Q ss_pred CCCceEEEEECCCCCCCcEEEEeecC-CCeEEEEEeCCCCcEEEEEEcccc--ccEEEEEECCC------CC-ceeEeee
Q 006375 148 LRPDKAWLHKLEADQSNDICLYHEKD-DIYSLGLQASESKKFLFIASESKI--TRFVFYLDVSK------PE-ELRVLTP 217 (648)
Q Consensus 148 ~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~s~Dg~~l~~~~~~~~--~~~l~~~dl~~------~~-~~~~l~~ 217 (648)
.++.+||++++++++.++.+++++.+ +.+..++.|||||++|++.+.+.. .++||++|+++ +. .++.+..
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~ 284 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence 44778999999998777788887754 556678999999999999876443 68999999987 53 3677777
Q ss_pred cccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcc--eeEecCCCCcccceEEEe-CCEEEEEEecCCeeEEEE
Q 006375 218 RVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSET--TVLIPHRESVKLQDIQLF-IDHLAVYEREGGLQKITT 294 (648)
Q Consensus 218 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~l~v 294 (648)
+.....+.|+|+|++|+|.++. ++++++|++++++++... +.++++.....+.++.++ ++++++....++..+|++
T Consensus 285 ~~~~~~~~~s~dg~~l~~~s~~-~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~ 363 (710)
T 2xdw_A 285 NFEGEYDYVTNEGTVFTFKTNR-HSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (710)
T ss_dssp SSSSCEEEEEEETTEEEEEECT-TCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEEeccCCEEEEEECC-CCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence 6666666799999999999987 567899999999875432 337777655567788888 789999999999999999
Q ss_pred EEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc--EEEEEEeeecCCCCCC
Q 006375 295 YRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI--SVLKKIETVLGGFDTN 372 (648)
Q Consensus 295 ~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~--~~~~~~~~~~~~~~~~ 372 (648)
+++.. |+.+ +.+.++. ..+.++..+++++.++|.++|+++|+++|.+|+.+++ .++++..+. .++++.
T Consensus 364 ~~~~~-g~~~------~~l~~~~--~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~~~~-~~~~~~ 433 (710)
T 2xdw_A 364 HDLAT-GALL------KIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTV-KGIDAS 433 (710)
T ss_dssp EETTT-CCEE------EEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCC-TTCCGG
T ss_pred EECCC-CCEE------EecCCCC--ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeeeccc-CCcCcc
Confidence 99842 3322 2344442 2344455667888999999999999999999999988 666554433 357888
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHH-CCCEEEEEccCCCCCCCh
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~g~~g~ 451 (648)
.+..+++++++.||.+|++++++|++. ..+++.|+||++|||++....+.|...++.|++ +||+|+++|+||+|++|+
T Consensus 434 ~~~~~~~~~~~~dg~~i~~~~~~p~~~-~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~g~ 512 (710)
T 2xdw_A 434 DYQTVQIFYPSKDGTKIPMFIVHKKGI-KLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGE 512 (710)
T ss_dssp GEEEEEEEEECTTSCEEEEEEEEETTC-CCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHH
T ss_pred ccEEEEEEEEcCCCCEEEEEEEecCCC-CCCCCccEEEEEcCCCCCcCCCcccHHHHHHHHhCCcEEEEEccCCCCCCCh
Confidence 889999999999999999999999886 566789999999999998888889888888888 999999999999999999
Q ss_pred hhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCC
Q 006375 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI 531 (648)
Q Consensus 452 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~ 531 (648)
.|+.++...++.+.++|+++++++|++++++|++||+|+|+||||++++++++++|++|+|+|+.+|++|+..++..
T Consensus 513 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~--- 589 (710)
T 2xdw_A 513 TWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKY--- 589 (710)
T ss_dssp HHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGS---
T ss_pred HHHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhcccc---
Confidence 99999988888899999999999999999999999999999999999999999999999999999999998876532
Q ss_pred CCCcccccccCCCCCHHHHHHHHcCCccccCC-----CCCCCeEEEeecCCCCccCCchHHHHHHHHHhc-------CCC
Q 006375 532 PLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVK-----AQNYPHILVTAGLNDPRVMYSEPAKFVAKLREM-------KTD 599 (648)
Q Consensus 532 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~-----~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~-------~~~ 599 (648)
......+.+||+|.+++.++++.++||++++. ++++||+||+||++|.+||++++.+++++|+.+ +.+
T Consensus 590 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 669 (710)
T 2xdw_A 590 TIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNP 669 (710)
T ss_dssp TTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSC
T ss_pred CCChhHHHhCCCCCCHHHHHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccChhHHHHHHHHHHhhhccccCCCcC
Confidence 11112236789998888888899999999999 789977999999999999999999999999987 555
Q ss_pred CCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCCC
Q 006375 600 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLP 641 (648)
Q Consensus 600 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 641 (648)
.+++ ..+++||+......+..+..+.+++||.++|+...
T Consensus 670 ~~~~---~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 708 (710)
T 2xdw_A 670 LLIH---VDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 708 (710)
T ss_dssp EEEE---EESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred EEEE---EeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCcc
Confidence 4444 44589998776655566777889999999999764
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-76 Score=666.14 Aligned_cols=604 Identities=26% Similarity=0.417 Sum_probs=505.5
Q ss_pred CHHHHhhccCCCCCCCCeEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCc
Q 006375 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGF 80 (648)
Q Consensus 1 ~~~~~~~r~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~ 80 (648)
|+++|++++..++.+.|.++|+|+||.++.++++++++||+...+ +.+++|+|+|++++++ .
T Consensus 59 l~~~~~~~~~~~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~l~d~~~~a~~~-~ 120 (695)
T 2bkl_A 59 LAARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGES-----------------GQEKVLLDPNGWSKDG-T 120 (695)
T ss_dssp HHHHHHHHHSCCEECCCEEETTEEEEEEECTTCSSCEEEEEESTT-----------------SCCEEEECGGGSSSSS-C
T ss_pred HHHHHHHhhccccCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCC-----------------CCcEEEEchHHhccCC-C
Confidence 467888888889999999999999999999999999999988643 4678999999998864 5
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-eccccCcc-ceeEEecCC-eEEEEEeCCC--------CC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GKPLVGVT-ASVEWAGNE-ALVYITMDEI--------LR 149 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-~~~~~~~~-~~~~WspDg-~l~y~~~~~~--------~~ 149 (648)
..+..++|||||++|||+.+.+|+++.+|+++|+++|+.+ .+.+.+.. ..++||||| .|+|++.+.. .+
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~ 200 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPG 200 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGG
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCC
Confidence 8899999999999999999999999999999999999987 54555553 679999999 9999987654 35
Q ss_pred CceEEEEECCCCCCCcEEEEeecCC-CeEEEEEeCCCCcEEEEEEccc-cccEEEEEECCCCCceeEeeecccceeeeEe
Q 006375 150 PDKAWLHKLEADQSNDICLYHEKDD-IYSLGLQASESKKFLFIASESK-ITRFVFYLDVSKPEELRVLTPRVVGVDTAAS 227 (648)
Q Consensus 150 ~~~l~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~s~Dg~~l~~~~~~~-~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s 227 (648)
+.+||++++++++.++++++++.+. .+...+.|||||++|++.+... ..++||+++..+++ ++.+..+.....+.++
T Consensus 201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~ 279 (695)
T 2bkl_A 201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA 279 (695)
T ss_dssp GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE
T ss_pred CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe
Confidence 7789999999987667888877553 4667889999999999988766 67899999887776 7778776665555566
Q ss_pred ecCCEEEEEeccCCCCCcEEEEEeCCCCCccee--EecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCccc
Q 006375 228 HRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLK 305 (648)
Q Consensus 228 ~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~ 305 (648)
++|+ ||+.++. ++++++|++++++++....| ++++.....+.++.++++++++....++..+|++++++ ++.+
T Consensus 280 ~~g~-l~~~s~~-~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~--g~~~- 354 (695)
T 2bkl_A 280 WKDR-FYVLTDE-GAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLK--GKPV- 354 (695)
T ss_dssp ETTE-EEEEECT-TCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETT--CCEE-
T ss_pred cCCc-EEEEECC-CCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC--CCee-
Confidence 8999 9999886 46789999999987543223 77766566688889999999999999999999999876 4422
Q ss_pred ccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCcceEEEEEeCCC
Q 006375 306 SLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASD 385 (648)
Q Consensus 306 ~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 385 (648)
+.+.+++.. .+.++..+++++.++|.++|+++|+++|.+|+.+++.++++... ..+++..+..+++++++.|
T Consensus 355 -----~~l~~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~~~--~~~~~~~~~~~~~~~~~~d 426 (695)
T 2bkl_A 355 -----RTVQLPGVG-AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKVD--VPMNPEQYQVEQVFYASKD 426 (695)
T ss_dssp -----EECCCSSSS-EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEECC--CSSCGGGEEEEEEEEECTT
T ss_pred -----EEecCCCCe-EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCC--CCCCHHHCeEEEEEEECCC
Confidence 234454332 35556667788999999999999999999999999866555332 2477778889999999999
Q ss_pred CeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCc
Q 006375 386 GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNT 465 (648)
Q Consensus 386 g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~ 465 (648)
|.+|++++++|++. ..+++.|+||++|||++....+.|...++.|+++||+|+++|+||+|++|+.|+.++...++.+.
T Consensus 427 g~~i~~~~~~p~~~-~~~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~ 505 (695)
T 2bkl_A 427 GTKVPMFVVHRKDL-KRDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNV 505 (695)
T ss_dssp SCEEEEEEEEETTC-CCSSCCCEEEECCCCTTCCCCCCCCGGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHH
T ss_pred CCEEEEEEEECCCC-CCCCCccEEEEECCCCccccCCCcCHHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhcCCCc
Confidence 99999999999885 55678999999999999988888998888899999999999999999999999999988888899
Q ss_pred HhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCC
Q 006375 466 FTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPW 545 (648)
Q Consensus 466 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~ 545 (648)
++|+++++++|++++++|++||+|+|+||||++++++++++|++|+|+|+.+|++|+.... ..+.....+.+||+|.
T Consensus 506 ~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~---~~~~~~~~~~~~g~~~ 582 (695)
T 2bkl_A 506 FDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYH---LFGSGRTWIPEYGTAE 582 (695)
T ss_dssp HHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGG---GSTTGGGGHHHHCCTT
T ss_pred HHHHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhcc---ccCCCcchHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999987653 2333334447889998
Q ss_pred CHHHHHHHHcCCccccCCCCC-CCeEEEeecCCCCccCCchHHHHHHHHHh---cCCCCCeEEEEecCCCCccCCCchHH
Q 006375 546 KEEFYFYMKSYSPVDNVKAQN-YPHILVTAGLNDPRVMYSEPAKFVAKLRE---MKTDDNILLFKCELGAGHFSKSGRFE 621 (648)
Q Consensus 546 ~~~~~~~~~~~sp~~~~~~~~-~P~~li~~g~~D~~v~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~gH~~~~~~~~ 621 (648)
+++.++.+.++||++++++++ +||+||+||++|.+||++++++++++|+. .+.+.+ +...+++||+......+
T Consensus 583 ~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~gH~~~~~~~~ 659 (695)
T 2bkl_A 583 KPEDFKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGNPATAL---LRIEANAGHGGADQVAK 659 (695)
T ss_dssp SHHHHHHHHHHCGGGCCCSSCCCCEEEEEEETTCSSSCTHHHHHHHHHHHTSTTCCSCEE---EEEETTCBTTBCSCHHH
T ss_pred CHHHHHHHHhcChHhhhhhcCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhhccCCCCEE---EEEeCCCCcCCCCCHHH
Confidence 888888999999999999874 57799999999999999999999999998 454544 44445899987655555
Q ss_pred HHHHHHHHHHHHHHhcCCCCCC
Q 006375 622 RLREAAFTYTFLMRALSMLPSV 643 (648)
Q Consensus 622 ~~~~~~~~~~fl~~~l~~~~~~ 643 (648)
..+..+.+++||.++|+..+.+
T Consensus 660 ~~~~~~~~~~fl~~~l~~~~~~ 681 (695)
T 2bkl_A 660 AIESSVDLYSFLFQVLDVQGAQ 681 (695)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHcCCCCCC
Confidence 6677778999999999987654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-74 Score=660.88 Aligned_cols=607 Identities=27% Similarity=0.409 Sum_probs=494.5
Q ss_pred CHHHHhhccCCCCCCCCeEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCc
Q 006375 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGF 80 (648)
Q Consensus 1 ~~~~~~~r~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~ 80 (648)
|+++|++++..++.+.|.++|+|+||.++.++++++++||+..... +.+.+++|||+|+++++ +.
T Consensus 98 l~~~~~~~~~~~~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~lld~~~l~~~-~~ 162 (741)
T 1yr2_A 98 LEKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAP--------------VGTKGRVLLDPNTWAKD-GA 162 (741)
T ss_dssp HHHHHHHHSCCCEECCCEEETTEEEEEEECSSCSSCEEEEEETTSC--------------TTCCCEEEECGGGCC-----
T ss_pred HHHHHHHhhcccccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCcc--------------CCCCCEEEECHHHhccC-CC
Confidence 4678888888899999999999999999999999999999885410 01467899999999875 35
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCc-cceeEEecCCeEEEEEeCCCC---------CC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNEALVYITMDEIL---------RP 150 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~-~~~~~WspDg~l~y~~~~~~~---------~~ 150 (648)
..+..++|||||++|||+.+.+|+++.+|+++|+++|+.+...+.+. ...++||||.+|+|++.+... .+
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCC
Confidence 78999999999999999999999999999999999999877655554 357999999778888765432 36
Q ss_pred ceEEEEECCCCCCCcEEEEeecCC-CeEEEEEeCCCCcEEEEEEccc--cccEEEEEECCCCC-c-eeEeeecccceeee
Q 006375 151 DKAWLHKLEADQSNDICLYHEKDD-IYSLGLQASESKKFLFIASESK--ITRFVFYLDVSKPE-E-LRVLTPRVVGVDTA 225 (648)
Q Consensus 151 ~~l~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~s~Dg~~l~~~~~~~--~~~~l~~~dl~~~~-~-~~~l~~~~~~~~~~ 225 (648)
.+||++++++++.++.+++++.+. .+..++.|||||++|++.+.+. ..++||++|++++. . ++.+..+.....+.
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 322 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF 322 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE
Confidence 789999999987777888887653 4677899999999999988665 46899999998863 3 56677665555566
Q ss_pred EeecCCEEEEEeccCCCCCcEEEEEeCCCCC-cceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcc
Q 006375 226 ASHRGNHFFITRRSDELFNSELLACPVDNTS-ETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPL 304 (648)
Q Consensus 226 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~ 304 (648)
++|+|++|+|.++. ++++++|++++++++. ..+.++++... .+.++.++++++++....++..+|++++++ ++.+
T Consensus 323 ~~~dg~~l~~~s~~-~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~--g~~~ 398 (741)
T 1yr2_A 323 VDGVGDQLWFVSGD-GAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIAGNRLFASYIHDAKSQVLAFDLD--GKPA 398 (741)
T ss_dssp EEEETTEEEEEECT-TCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEEBTEEEEEEEETTEEEEEEEETT--SCEE
T ss_pred EeccCCEEEEEECC-CCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEECCEEEEEEEECCEEEEEEEeCC--CCce
Confidence 78999999999997 5678999999997642 22336766554 477888999999999999999999999876 4432
Q ss_pred cccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCcceEEEEEeCC
Q 006375 305 KSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASAS 384 (648)
Q Consensus 305 ~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 384 (648)
+.+.+|+.. .+.++..+++++.++|.++|+++|+++|.+|+.+++.++++. ....|++..+..+++++++.
T Consensus 399 ------~~l~~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~--~~~~~~~~~~~~~~~~~~~~ 469 (741)
T 1yr2_A 399 ------GAVSLPGIG-SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEP--VHLTFDPADFRVEQVFYPSK 469 (741)
T ss_dssp ------EECBCSSSC-EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECSC--CCCSSCGGGEEEEEEEEECT
T ss_pred ------eeccCCCCe-EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEec--CCCCCChhHCEEEEEEEEcC
Confidence 344554432 344455667888999999999999999999999988554432 22357777888999999999
Q ss_pred CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCC
Q 006375 385 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN 464 (648)
Q Consensus 385 ~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~ 464 (648)
||.+|++++++|++. +++.|+||++|||++....+.|...++.|+++||+|+++|+||+|++|+.|+.++...++.+
T Consensus 470 dg~~i~~~~~~p~~~---~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~ 546 (741)
T 1yr2_A 470 DGTKVPMFIVRRKDA---KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDKKQN 546 (741)
T ss_dssp TSCEEEEEEEEETTC---CSCCCEEEECCCCTTCCCCCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSGGGTHH
T ss_pred CCCEEEEEEEecCCC---CCCCcEEEEECCCCCccCCCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhhhcCCC
Confidence 999999999999863 46789999999999988888898888899999999999999999999999999988888889
Q ss_pred cHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCC
Q 006375 465 TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP 544 (648)
Q Consensus 465 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~ 544 (648)
.++|+++++++|++++++|++||+|+|+||||++++++++++|++|+++|+.+|++|+.... ..+.....+.+||+|
T Consensus 547 ~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~---~~~~~~~~~~~~g~~ 623 (741)
T 1yr2_A 547 VFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFD---QFTAGRYWVDDYGYP 623 (741)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGG---GSTTGGGGHHHHCCT
T ss_pred cHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCcccccccc---CCCCCchhHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999987643 233333344788999
Q ss_pred CCHHHHHHHHcCCccccCCC-CCCCeEEEeecCCCCccCCchHHHHHHHHHh---cCCCCCeEEEEecCCCCccCCCchH
Q 006375 545 WKEEFYFYMKSYSPVDNVKA-QNYPHILVTAGLNDPRVMYSEPAKFVAKLRE---MKTDDNILLFKCELGAGHFSKSGRF 620 (648)
Q Consensus 545 ~~~~~~~~~~~~sp~~~~~~-~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~gH~~~~~~~ 620 (648)
.+++.++++.++||++++++ +++||+||+||++|.+||++++.+++++|+. .+.+.+ +...+++||+....+.
T Consensus 624 ~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~g~~~~---l~~~~~~gH~~~~~~~ 700 (741)
T 1yr2_A 624 EKEADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPHL---IRIETRAGHGSGKPID 700 (741)
T ss_dssp TSHHHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHHSCCCSSCEE---EEEC---------CHH
T ss_pred CCHHHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhhhhcCCCCEE---EEEeCCCCcCCCCCHH
Confidence 88888899999999999998 8987799999999999999999999999998 665544 4444589998766655
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCC
Q 006375 621 ERLREAAFTYTFLMRALSMLPSVG 644 (648)
Q Consensus 621 ~~~~~~~~~~~fl~~~l~~~~~~~ 644 (648)
+..+..+.+++||.++|+..+.+-
T Consensus 701 ~~~~~~~~~~~fl~~~l~~~~~~~ 724 (741)
T 1yr2_A 701 KQIEETADVQAFLAHFTGLTPRPW 724 (741)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCccch
Confidence 666777889999999999876543
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-72 Score=619.28 Aligned_cols=605 Identities=23% Similarity=0.321 Sum_probs=486.7
Q ss_pred HHHHhhccCC----C-CCCCCeEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccC
Q 006375 2 FAELKGRIKQ----E-DVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAE 76 (648)
Q Consensus 2 ~~~~~~r~~~----~-~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~ 76 (648)
+++|++|+.+ + +.+.|.+.|+|+|+.++++.+++.++.|....+ +. .+.+.+|||||+|++++
T Consensus 56 ~~~l~~~~~~~~~~~~ri~~p~~~g~~~y~f~~d~~~~~gl~rrt~~~~---------~~---~~~p~wevllD~d~l~~ 123 (711)
T 4hvt_A 56 YKQIKKEIETIFYDQRKTPYGVIRKGYVYNFWMDDKNPQGLWRRTLVDN---------YS---KDKPNWEVLIDFDKLSK 123 (711)
T ss_dssp HHHHHHHHHHHHTCTTSCCCCEEETTEEEEEECCSSCSSCEEEEEEHHH---------HT---SSSCCCEEEEEHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCcEEECCEEEEEEecCCCCcEEEEEccchh---------cc---cCCCCcEEEeccccccc
Confidence 4555665553 4 699999999999999999999994444333311 00 11256899999999987
Q ss_pred CCCc-EEEeeEE-eCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc-Cc---------cceeEEecCCeEEEEEe
Q 006375 77 GRGF-YSVGCFQ-VSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV-GV---------TASVEWAGNEALVYITM 144 (648)
Q Consensus 77 ~~~~-~~~~~~~-~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~-~~---------~~~~~WspDg~l~y~~~ 144 (648)
..|. ..+.+.. +||||+++||+.+.+|+++..|+++|++|++.+.+.+. .. ++.++|.+++++||.+.
T Consensus 124 ~~g~~~~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~ 203 (711)
T 4hvt_A 124 KIGKKVAYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLV 203 (711)
T ss_dssp HHTSCEEEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCC
T ss_pred cCCCcEEEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeC
Confidence 5465 8888888 99999999999999999999999999999998876544 22 24459985558888643
Q ss_pred C------CCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcE----EEEEEc-cccccEEEEEECCCCC-ce
Q 006375 145 D------EILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKF----LFIASE-SKITRFVFYLDVSKPE-EL 212 (648)
Q Consensus 145 ~------~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~----l~~~~~-~~~~~~l~~~dl~~~~-~~ 212 (648)
. +.+.+.+||+|.+|++++++++||++.+..+.++...++|+++ +++... +..++++|+++++.+. ++
T Consensus 204 ~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 283 (711)
T 4hvt_A 204 LHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL 283 (711)
T ss_dssp CSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE
T ss_pred CCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc
Confidence 2 2456789999999999999999999988777888888999885 555543 4456999999987543 24
Q ss_pred eEee-ecccceeeeEeecCCEEEEEeccC------CCCCcEEEEEeCCCCC-----ccee--EecCCCCcccceEEEeCC
Q 006375 213 RVLT-PRVVGVDTAASHRGNHFFITRRSD------ELFNSELLACPVDNTS-----ETTV--LIPHRESVKLQDIQLFID 278 (648)
Q Consensus 213 ~~l~-~~~~~~~~~~s~dg~~l~~~~~~~------~~~~~~l~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~ 278 (648)
..|. +.. ... ++..++++|+.+..+ +.++++|++++++++. ..+| ++++..+..+.++.++++
T Consensus 284 ~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 284 QKINMPSD--ATL-QGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD 360 (711)
T ss_dssp EECCSCTT--CEE-EEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred eEeecCCc--ceE-eeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence 4442 222 122 334466888876432 2478999999997642 2334 677777888999999999
Q ss_pred EEEEEEecCCeeEEEEEEcCCCCC-cccccCCCce-eecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 279 HLAVYEREGGLQKITTYRLPAVGE-PLKSLQGGKS-VEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 279 ~l~~~~~~~~~~~l~v~~~~~~g~-~~~~l~~~~~-i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
++++...+++..++.++++.. +. .. +. +.+|+. .++...+.+++++.+++.++|+++|+++|.+|+. ++
T Consensus 361 ~l~~~~~~~~~~~l~~~~~~~-g~~~~------~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 361 RVFLATYDNVVAKVVTFTLEN-EQWTK------PVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp CEEEEEEETTEEEEEEECEET-TEECC------CEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred EEEEEEEECCEEEEEEEECCC-CceEE------EeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence 999999999999999998763 21 11 23 556642 2343344457788899999999999999999998 76
Q ss_pred EEEEEEeeecCCCCCCCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhH-HHHHHCC
Q 006375 357 SVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSR-LSLLDRG 435 (648)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~-~~l~~~G 435 (648)
.+.++ .....+++..+..+++++++.||.+|++++++|++. +.+++.|+||++|||++....+.|.... +.|+++|
T Consensus 432 ~~~l~--~~~~~~~~~~~~~e~v~~~s~DG~~i~~~l~~P~~~-~~~~~~P~vl~~HGG~~~~~~~~~~~~~~q~la~~G 508 (711)
T 4hvt_A 432 LKIIR--KALYSFDSENYVLEQKEATSFDGVKIPYFLVYKKGI-KFDGKNPTLLEAYGGFQVINAPYFSRIKNEVWVKNA 508 (711)
T ss_dssp EEEEE--CCSSCCCGGGEEEEEEEEECTTSCEEEEEEEEETTC-CCSSCCCEEEECCCCTTCCCCCCCCHHHHHHTGGGT
T ss_pred EEEEe--cCCcccCcccCeeEEEEEECCCCeEEEEEEEecCCC-CCCCCccEEEEECCCCCCCCCCcccHHHHHHHHHCC
Confidence 44433 334467777888999999999999999999999886 5678899999999999999988898777 4899999
Q ss_pred CEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEe
Q 006375 436 FIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 515 (648)
Q Consensus 436 ~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~ 515 (648)
|+|+++|+||+|++|+.|+.++...++.+.++|+.++++||++++++|++||+|+|+|+||++++++++++|++|+|+|+
T Consensus 509 y~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f~a~V~ 588 (711)
T 4hvt_A 509 GVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVAC 588 (711)
T ss_dssp CEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEE
T ss_pred CEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHHHHHHHcCCCCcccEEEEeECHHHHHHHHHHHhCcCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccCCCCCCCcccc-cccCCCCCHHHHHHHHcCCccccCCCCC-CCeEEEeecCCCCccCCchHHHHHHHH
Q 006375 516 AVPFVDVLTTMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKAQN-YPHILVTAGLNDPRVMYSEPAKFVAKL 593 (648)
Q Consensus 516 ~~~~~d~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~~~~~~-~P~~li~~g~~D~~v~~~~~~~~~~~l 593 (648)
.+|++|+..+... . ....| .+||+|.+++.++.+.++||++++++++ +||+||+||++|++||++++.+++++|
T Consensus 589 ~~pv~D~~~~~~~---~-~~~~~~~~~G~p~~~~~~~~l~~~SP~~~v~~i~~~pPvLii~G~~D~~Vp~~~s~~~~~aL 664 (711)
T 4hvt_A 589 EVPILDMIRYKEF---G-AGHSWVTEYGDPEIPNDLLHIKKYAPLENLSLTQKYPTVLITDSVLDQRVHPWHGRIFEYVL 664 (711)
T ss_dssp ESCCCCTTTGGGS---T-TGGGGHHHHCCTTSHHHHHHHHHHCGGGSCCTTSCCCEEEEEEETTCCSSCTHHHHHHHHHH
T ss_pred eCCccchhhhhcc---c-cchHHHHHhCCCcCHHHHHHHHHcCHHHHHhhcCCCCCEEEEecCCCCcCChHHHHHHHHHH
Confidence 9999998775421 1 12234 7789998888888999999999999985 577999999999999999999999999
Q ss_pred -HhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCC
Q 006375 594 -REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 594 -~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
++.+++.++++++ ++||+.........+..+.+++||.++||+.
T Consensus 665 ~~~~g~pv~l~~~p---~~gHg~~~~~~~~~~~~~~i~~FL~~~Lg~~ 709 (711)
T 4hvt_A 665 AQNPNTKTYFLESK---DSGHGSGSDLKESANYFINLYTFFANALKLK 709 (711)
T ss_dssp TTCTTCCEEEEEES---SCCSSSCSSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCCEEEEEEC---CCCCcCcCCcchHHHHHHHHHHHHHHHhCCc
Confidence 9998876655554 8899877666777777888999999999975
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-50 Score=450.51 Aligned_cols=520 Identities=15% Similarity=0.091 Sum_probs=377.9
Q ss_pred CCCCCE-EEEEEeCCCCeEEEEEEEECC--C-CCeeeccc------cCccceeEEecCC-eEEEEEeCCC-----CCCce
Q 006375 89 SPDNKL-VAYAEDTKGDEIYTVYVIDIE--T-GTPVGKPL------VGVTASVEWAGNE-ALVYITMDEI-----LRPDK 152 (648)
Q Consensus 89 SPDG~~-la~~~~~~G~e~~~l~v~dl~--~-g~~~~~~~------~~~~~~~~WspDg-~l~y~~~~~~-----~~~~~ 152 (648)
||||++ |||+.+.. .+||+++++ + ++....+. ......++||||| .|+|++.+.. ....+
T Consensus 87 SPDg~~~la~~~~~~----~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 87 RPAGGPLLVFTHFGD----QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp CSSSSCEEEEEBTTT----CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred ecCCCeEEEEEECCC----CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 599999 99987653 479999998 5 66554332 1234579999999 9999886521 33467
Q ss_pred EEEEECCCCC----CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccc-----cccEEEEEECC-CCC--ceeEeeecc-
Q 006375 153 AWLHKLEADQ----SNDICLYHEKDDIYSLGLQASESKKFLFIASESK-----ITRFVFYLDVS-KPE--ELRVLTPRV- 219 (648)
Q Consensus 153 l~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~-----~~~~l~~~dl~-~~~--~~~~l~~~~- 219 (648)
||++++.+.. .+...+. +....+...+.|||||++|++.+... ...+||++|++ ++. ..+.+....
T Consensus 163 i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAVRELS-DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp EEEEETTSTTTTCGGGSEESS-CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred EEEEECCCCccccCCceeEEE-ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 9999998721 1333333 12234555789999999999887554 34799999998 562 255565542
Q ss_pred cc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcc-------cceEEEe-CCEEEEEEecCCee
Q 006375 220 VG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVK-------LQDIQLF-IDHLAVYEREGGLQ 290 (648)
Q Consensus 220 ~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~l~~~~~~~~~~ 290 (648)
.. ....|+|||+ ++|+++.+ ...+|+++++++ +..+.+++...... +..+.+. ++.+++.... +..
T Consensus 242 ~~~~~~~~spdg~-l~~~~~~~--~~~~l~~~~~~~-~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (662)
T 3azo_A 242 EAIAQAEWAPDGS-LIVATDRT--GWWNLHRVDPAT-GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA 316 (662)
T ss_dssp BCEEEEEECTTSC-EEEEECTT--SSCEEEEECTTT-CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC
T ss_pred ceEcceEECCCCe-EEEEECCC--CCeEEEEEECCC-CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc
Confidence 22 3356999999 88888864 346899999865 33332443322211 3345554 4567777777 777
Q ss_pred EEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEEEEEEeee-cCCC
Q 006375 291 KITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETV-LGGF 369 (648)
Q Consensus 291 ~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~-~~~~ 369 (648)
+|++++++ ++.+..+ ..+.. .+..+. +++++.++|..++...|.++|.+|+.+++.+. +... ...+
T Consensus 317 ~l~~~d~~--~~~~~~l------~~~~~--~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~--l~~~~~~~~ 383 (662)
T 3azo_A 317 VLGILDPE--SGELVDA------AGPWT--EWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRART--IGARHTDPV 383 (662)
T ss_dssp EEEEEETT--TTEEEEC------CSSCC--EEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCEEE--EESCCCCSS
T ss_pred EEEEEECC--CCcEEEe------cCCCC--eEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCceEE--eecCCcccC
Confidence 88888876 4433322 22111 222221 46788899999999999999999999988443 3221 1234
Q ss_pred CCCCc-ceEEEEEeCCCCeEEeEEEEEeeCccc----cCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccC
Q 006375 370 DTNNY-FTERKWASASDGTQIPICIVYRKNLVK----LDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIR 444 (648)
Q Consensus 370 ~~~~~-~~~~~~~~s~~g~~i~~~l~~~~~~~~----~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~r 444 (648)
++..+ ..+.+.+++.+|.+|+++++.|++. + .+++.|+||++||+++......|...++.|+++||+|+++|+|
T Consensus 384 ~~~~~~~~~~~~~~~~dg~~i~~~~~~P~~~-~~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~r 462 (662)
T 3azo_A 384 DPAYYPEPQIRTFTAPDGREIHAHIYPPHSP-DFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYG 462 (662)
T ss_dssp CGGGSCCCEEEEEECTTSCEEEEEEECCCCS-SEECCTTCCCCEEEEECSSSSSCCCCSCCHHHHHHHTTTCEEEEEECT
T ss_pred CccccCcceEEEEEcCCCCEEEEEEECCCCc-cccCCCCCCccEEEEECCCCCccCcccchHHHHHHHhCCCEEEEECCC
Confidence 44444 4688899998999999999998864 3 3567899999999988777677888889999999999999999
Q ss_pred CCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccc
Q 006375 445 GGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT 524 (648)
Q Consensus 445 G~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~ 524 (648)
|++++|+.|........+...++|+.+++++|++++.+|++||+|+|+||||+++++++.+ |++|+++|+.+|+.|+..
T Consensus 463 G~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~~~~~~~~ 541 (662)
T 3azo_A 463 GSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLG 541 (662)
T ss_dssp TCSSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEESCCCCHHH
T ss_pred CCCCccHHHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecCCccCHHH
Confidence 9999999999876666666789999999999999999999999999999999999998886 999999999999999765
Q ss_pred cccCCCCCCCcccc--cccCCC-CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCC
Q 006375 525 TMLDPTIPLTTAEW--EEWGDP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN 601 (648)
Q Consensus 525 ~~~~~~~~~~~~~~--~~~g~~-~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~ 601 (648)
........+ ...+ ..+|.+ .+. +.+..++|+.++.++++| +||+||++|.+||+.++++++++|+.++++.+
T Consensus 542 ~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~sp~~~~~~~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 616 (662)
T 3azo_A 542 WADGGTHDF-ESRYLDFLIGSFEEFP---ERYRDRAPLTRADRVRVP-FLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHA 616 (662)
T ss_dssp HHTTCSCGG-GTTHHHHHTCCTTTCH---HHHHHTCGGGGGGGCCSC-EEEEEETTCSSSCTHHHHHHHHHHTTSCCCEE
T ss_pred Hhcccccch-hhHhHHHHhCCCccch---hHHHhhChHhHhccCCCC-EEEEeeCCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 442111111 1112 123543 333 345778999999999998 99999999999999999999999999988877
Q ss_pred eEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCCCC
Q 006375 602 ILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPS 642 (648)
Q Consensus 602 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 642 (648)
+++++ ++||+... .....+....+++||.++|+..+.
T Consensus 617 ~~~~~---~~gH~~~~-~~~~~~~~~~~~~fl~~~l~~~~~ 653 (662)
T 3azo_A 617 YLSFE---GEGHGFRR-KETMVRALEAELSLYAQVFGVEVA 653 (662)
T ss_dssp EEEET---TCCSSCCS-HHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred EEEEC---CCCCCCCC-hHHHHHHHHHHHHHHHHHhCCCCC
Confidence 77665 88997643 222334455789999999987644
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-47 Score=431.34 Aligned_cols=529 Identities=15% Similarity=0.104 Sum_probs=369.1
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCc--------------------cceeEEecCC-eEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV--------------------TASVEWAGNE-ALV 140 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~--------------------~~~~~WspDg-~l~ 140 (648)
.+..+.|||||++|||..+ .+|+++|+++|+.+..+..+. ...+.||||| .|+
T Consensus 113 ~~~~~~~SPdG~~la~~~~------~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la 186 (740)
T 4a5s_A 113 NTQWVTWSPVGHKLAYVWN------NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLA 186 (740)
T ss_dssp TEEEEEECSSTTCEEEEET------TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEE
T ss_pred cceeeEECCCCCEEEEEEC------CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEE
Confidence 3678999999999999964 279999999988664332221 1248899999 999
Q ss_pred EEEeCCCC-------------------------------CCceEEEEECCC---CCCCcEEEEee-----cCCCeEEEEE
Q 006375 141 YITMDEIL-------------------------------RPDKAWLHKLEA---DQSNDICLYHE-----KDDIYSLGLQ 181 (648)
Q Consensus 141 y~~~~~~~-------------------------------~~~~l~~~~l~~---~~~~~~~~~~~-----~~~~~~~~~~ 181 (648)
|.+.+... ...+|+++++.+ +.......... ....+...+.
T Consensus 187 ~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 266 (740)
T 4a5s_A 187 YAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVT 266 (740)
T ss_dssp EEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEE
T ss_pred EEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEE
Confidence 98865431 112588888887 52111222221 1334566789
Q ss_pred eCCCCcEEEEEEccc-cccEEEEEECCCCC------ceeEe-eec-ccce------eeeEeecCCEEE-EEeccCCCCCc
Q 006375 182 ASESKKFLFIASESK-ITRFVFYLDVSKPE------ELRVL-TPR-VVGV------DTAASHRGNHFF-ITRRSDELFNS 245 (648)
Q Consensus 182 ~s~Dg~~l~~~~~~~-~~~~l~~~dl~~~~------~~~~l-~~~-~~~~------~~~~s~dg~~l~-~~~~~~~~~~~ 245 (648)
|||||+.+++..++. ....|+++|+++++ ....+ ... ...+ ...|||||+.|+ +.+.++ ...
T Consensus 267 wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~--G~~ 344 (740)
T 4a5s_A 267 WATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE--GYR 344 (740)
T ss_dssp EEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTT--SCE
T ss_pred EeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCC--Cce
Confidence 999999877766654 34689999998875 01222 121 1111 346999999988 666653 357
Q ss_pred EEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEec----CCeeEEEEEEcCCCCCccc-ccCCCceeecCCCee
Q 006375 246 ELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYERE----GGLQKITTYRLPAVGEPLK-SLQGGKSVEFIDPVY 320 (648)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~l~v~~~~~~g~~~~-~l~~~~~i~~~~~~~ 320 (648)
+|+++++++ +..+.++.....+ ..-+.++++.+++.... .+..+|+.++++ +.... .|+.. +.....
T Consensus 345 ~l~~~~~~~-~~~~~lT~g~~~v-~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~--g~~~~~~lt~~----~~~~~~ 416 (740)
T 4a5s_A 345 HICYFQIDK-KDCTFITKGTWEV-IGIEALTSDYLYYISNEYKGMPGGRNLYKIQLI--DYTKVTCLSCE----LNPERC 416 (740)
T ss_dssp EEEEEETTC-SSCEESCCSSSCE-EEEEEECSSEEEEEESCGGGCTTCBEEEEEETT--EEEEEEESSTT----TSTTTB
T ss_pred EEEEEECCC-CceEecccCCEEE-EEEEEEeCCEEEEEEecCCCCCceeEEEEEECC--CCCcceeeccc----cCCCCC
Confidence 999999986 4444344433222 22344667788887765 345577777776 43221 22211 000011
Q ss_pred eeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEEEEEEeeec----CCCCCCCc-ceEEEEEeCCCCeEEeEEEEE
Q 006375 321 SIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVL----GGFDTNNY-FTERKWASASDGTQIPICIVY 395 (648)
Q Consensus 321 ~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~s~~g~~i~~~l~~ 395 (648)
......+++++..+.+.++++. |+.++.++..+++. .++...+ ..+....+ ..+.+.+ +.+|.+|+++++.
T Consensus 417 ~~~~~~~S~dg~~~~~~~s~~~-~p~~~l~~~~~~~~--~~~l~~n~~~~~~~~~~~~~~~~~~~~-~~dg~~l~~~~~~ 492 (740)
T 4a5s_A 417 QYYSVSFSKEAKYYQLRCSGPG-LPLYTLHSSVNDKG--LRVLEDNSALDKMLQNVQMPSKKLDFI-ILNETKFWYQMIL 492 (740)
T ss_dssp CBEEEEECTTSSEEEEEECSBS-SCEEEEEETTTTEE--EEEEECCHHHHHHHTTEECCEEEEEEE-EETTEEEEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCC-CCEEEEEECCCCcE--EEEeccChhhhhhhhhccCCccEEEEE-ccCCeEEEEEEEe
Confidence 1223456678889999999987 88999999988763 2222111 11222223 3455666 6899999999999
Q ss_pred eeCccccCCCCcEEEEecCCCCCCC-CCCCch-hHHHHH-HCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHH
Q 006375 396 RKNLVKLDGSDPLLLYGYGSYEICN-DPAFNS-SRLSLL-DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC 472 (648)
Q Consensus 396 ~~~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~-~~~~l~-~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~ 472 (648)
|++. +..++.|+||++|||++... ...|.. ....++ ++||+|+++|+||+|++|..|........+...++|+.++
T Consensus 493 P~~~-~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~ 571 (740)
T 4a5s_A 493 PPHF-DKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEA 571 (740)
T ss_dssp CTTC-CTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHH
T ss_pred CCCC-CCCCCccEEEEECCCCcccccccccCcCHHHHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHH
Confidence 9886 56778999999999987643 233432 234555 5899999999999999999999887777777789999999
Q ss_pred HHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccc-cc-cCCCCCHHHH
Q 006375 473 AEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW-EE-WGDPWKEEFY 550 (648)
Q Consensus 473 ~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~ 550 (648)
+++|.+++++|++||+|+|+||||++++.++.++|++|+++|+.+|+.|+..+. ..| +. .|.|...+..
T Consensus 572 i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~---------~~~~~~~~~~p~~~~~~ 642 (740)
T 4a5s_A 572 ARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYD---------SVYTERYMGLPTPEDNL 642 (740)
T ss_dssp HHHHHTSTTEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSB---------HHHHHHHHCCSSTTTTH
T ss_pred HHHHHhcCCcCCccEEEEEECHHHHHHHHHHHhCCCceeEEEEcCCccchHHhh---------hHHHHHHcCCCCccccH
Confidence 999999888999999999999999999999999999999999999999875321 112 12 2555322333
Q ss_pred HHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHH
Q 006375 551 FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTY 630 (648)
Q Consensus 551 ~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 630 (648)
+.+...+|..++.+++.||+||+||++|++||+.++.+++++|++++++.++++++ +++|..... ....+....+.
T Consensus 643 ~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~---~~~H~~~~~-~~~~~~~~~i~ 718 (740)
T 4a5s_A 643 DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYT---DEDHGIASS-TAHQHIYTHMS 718 (740)
T ss_dssp HHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEET---TCCTTCCSH-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHhcCCCCcEEEEEcCCCCccCHHHHHHHHHHHHHCCCCeEEEEEC---CCCCcCCCC-ccHHHHHHHHH
Confidence 44577899999999887559999999999999999999999999999988888886 889976322 12233345678
Q ss_pred HHHHHhcCCCCCCC
Q 006375 631 TFLMRALSMLPSVG 644 (648)
Q Consensus 631 ~fl~~~l~~~~~~~ 644 (648)
+||.++|+....+.
T Consensus 719 ~fl~~~l~~~~~~~ 732 (740)
T 4a5s_A 719 HFIKQCFSLPAAAS 732 (740)
T ss_dssp HHHHHHTTCC----
T ss_pred HHHHHHcCCCCCcc
Confidence 99999998765443
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-45 Score=405.55 Aligned_cols=495 Identities=18% Similarity=0.154 Sum_probs=359.9
Q ss_pred EEeeEEeCCCCCEEEEEEeC-CCCeEEEEEEEEC--CCCCeeeccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDT-KGDEIYTVYVIDI--ETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~-~G~e~~~l~v~dl--~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
.+..+.|||| +++|+.+. .|.+..+||++++ +++........+.. ..+|+||| .++|++.... .+.+++
T Consensus 66 ~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~-~~~~s~dg~~~~~~s~~~~----~~~l~d 138 (582)
T 3o4h_A 66 SVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMR-ILSGVDTGEAVVFTGATED----RVALYA 138 (582)
T ss_dssp EECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBE-EEEEEECSSCEEEEEECSS----CEEEEE
T ss_pred ccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccccccCCCCce-eeeeCCCCCeEEEEecCCC----CceEEE
Confidence 5668999999 68888775 5666789999999 66555332333333 47999999 8888765322 233557
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccc-cEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKIT-RFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFI 235 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~-~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~ 235 (648)
+.++ +.+.+..... ..+.|||||++|++.+..... ..||++|+++++ .+.++..... ....|||||++|+
T Consensus 139 ~~~g--~~~~l~~~~~----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~~l~~~~~~~~~~~~SpDG~~l~- 210 (582)
T 3o4h_A 139 LDGG--GLRELARLPG----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LRVFDSGEGSFSSASISPGMKVTA- 210 (582)
T ss_dssp EETT--EEEEEEEESS----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CEEECCSSCEEEEEEECTTSCEEE-
T ss_pred ccCC--cEEEeecCCC----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ceEeecCCCccccceECCCCCEEE-
Confidence 7766 3344444332 467899999999987665433 679999999987 7777654332 3456999999998
Q ss_pred EeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEE--------EeCC-EEEEEEecCCeeEEEEEEcCCCCCcccc
Q 006375 236 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQ--------LFID-HLAVYEREGGLQKITTYRLPAVGEPLKS 306 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~ 306 (648)
.+..+ ...+|+++|+++ +..+ ++... ...+..+. +++| .+++....++..+ ++.+ |...
T Consensus 211 ~~~~~--~~~~i~~~d~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~--l~~~---g~~~-- 278 (582)
T 3o4h_A 211 GLETA--REARLVTVDPRD-GSVE-DLELP-SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSA--VFID---GERV-- 278 (582)
T ss_dssp EEECS--SCEEEEEECTTT-CCEE-ECCCS-CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEE--EEET---TEEE--
T ss_pred EccCC--CeeEEEEEcCCC-CcEE-EccCC-CcChhhhhhccccceeEcCCCcEEEEEEcCCcEE--EEEE---CCee--
Confidence 44432 346899999987 3333 43322 22233333 5444 6677777777544 4455 3211
Q ss_pred cCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEEEEEEeeecCCCCC----CCcceEEEEEe
Q 006375 307 LQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDT----NNYFTERKWAS 382 (648)
Q Consensus 307 l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 382 (648)
..+.. .+..+.++ + +.+++..++..+|+++|.++..+ + +.++ .+++ .....+.+.++
T Consensus 279 -------~~~~~--~v~~~~~s-d-g~~l~~~s~~~~p~~l~~~d~~~-~--~~~l-----~~~~~~~~~~~~~~~~~~~ 339 (582)
T 3o4h_A 279 -------EAPQG--NHGRVVLW-R-GKLVTSHTSLSTPPRIVSLPSGE-P--LLEG-----GLPEDLRRSIAGSRLVWVE 339 (582)
T ss_dssp -------CCCSS--EEEEEEEE-T-TEEEEEEEETTEEEEEEEETTCC-E--EECC-----CCCHHHHHTEEEEEEEEEE
T ss_pred -------ccCCC--ceEEEEec-C-CEEEEEEcCCCCCCeEEEEcCCC-c--eEEE-----ecCCccccccCcceEEEEE
Confidence 11111 23334444 4 45778999999999999999865 4 2222 2221 23357899999
Q ss_pred CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCC
Q 006375 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 462 (648)
Q Consensus 383 s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 462 (648)
+.+|.+|+++++.|++. . .+.|+||++||+++......|...++.|+++||+|+++|+||++++|+.|.........
T Consensus 340 ~~~g~~i~~~~~~p~~~-~--~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~~~~~ 416 (582)
T 3o4h_A 340 SFDGSRVPTYVLESGRA-P--TPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPC 416 (582)
T ss_dssp CTTSCEEEEEEEEETTS-C--SSEEEEEEECSSSSCCCCSSCCHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTT
T ss_pred CCCCCEEEEEEEcCCCC-C--CCCcEEEEECCCcccccccccCHHHHHHHhCCCEEEEeccCCCCCCchhHHhhhhhhcc
Confidence 99999999999999865 2 37899999999988776777888889999999999999999999999999988777777
Q ss_pred CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccc--cc
Q 006375 463 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW--EE 540 (648)
Q Consensus 463 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~--~~ 540 (648)
...++|+.+++++|.+++.+| +|+++|+||||++++.++.++|++|+++|+.+|+.|+......... . ...| ..
T Consensus 417 ~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 492 (582)
T 3o4h_A 417 GGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDA-A-FRNFIEQL 492 (582)
T ss_dssp THHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCCCHHHHHHTCCH-H-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCccCHHHHhhcccc-h-hHHHHHHH
Confidence 788999999999999998777 9999999999999999999999999999999999997654321110 0 0011 11
Q ss_pred cCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchH
Q 006375 541 WGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRF 620 (648)
Q Consensus 541 ~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~ 620 (648)
+| .++ +.+..++|+.++.++++| +|++||++|.+||+.++++++++|+.++++.++++++ ++||+... ..
T Consensus 493 ~~--~~~---~~~~~~sp~~~~~~i~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~---~~gH~~~~-~~ 562 (582)
T 3o4h_A 493 TG--GSR---EIMRSRSPINHVDRIKEP-LALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIP---DAGHAINT-ME 562 (582)
T ss_dssp TT--TCH---HHHHHTCGGGGGGGCCSC-EEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEET---TCCSSCCB-HH
T ss_pred cC--cCH---HHHHhcCHHHHHhcCCCC-EEEEecCCCCCcCHHHHHHHHHHHHhCCCCEEEEEEC---CCCCCCCC-hH
Confidence 23 233 345778999999999988 9999999999999999999999999999888777775 88997652 22
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 006375 621 ERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 621 ~~~~~~~~~~~fl~~~l~~ 639 (648)
...+....+.+||.++|+.
T Consensus 563 ~~~~~~~~i~~fl~~~l~~ 581 (582)
T 3o4h_A 563 DAVKILLPAVFFLATQRER 581 (582)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 2233345678999999863
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=414.14 Aligned_cols=512 Identities=16% Similarity=0.190 Sum_probs=365.2
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCc------------------cceeEEecCC-eEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV------------------TASVEWAGNE-ALVYI 142 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~------------------~~~~~WspDg-~l~y~ 142 (648)
.+..+.|||||++|||..+ + +|+++|+++++....+..+. ...++||||| .|+|.
T Consensus 153 ~~~~~~~SPDG~~la~~~~--~----~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~ 226 (741)
T 2ecf_A 153 FATDAKLSPKGGFVSFIRG--R----NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYA 226 (741)
T ss_dssp CEEEEEECTTSSEEEEEET--T----EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEE
T ss_pred ccccccCCCCCCEEEEEeC--C----cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEE
Confidence 4678999999999999974 2 79999999987664322111 2459999999 99998
Q ss_pred EeCCCC----------------------------CCceEEEEECCC-CCCCcEEEEee-cCCCeEEEEEeCCCCcEEEEE
Q 006375 143 TMDEIL----------------------------RPDKAWLHKLEA-DQSNDICLYHE-KDDIYSLGLQASESKKFLFIA 192 (648)
Q Consensus 143 ~~~~~~----------------------------~~~~l~~~~l~~-~~~~~~~~~~~-~~~~~~~~~~~s~Dg~~l~~~ 192 (648)
+.+... ...+|+.+++.+ +. ...+... ........+.| |||++|++.
T Consensus 227 ~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~-pDg~~l~~~ 303 (741)
T 2ecf_A 227 RIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ--TQWIDLGKEQDIYLARVNW-RDPQHLSFQ 303 (741)
T ss_dssp EEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC--CEEECCCSCSSEEEEEEEE-EETTEEEEE
T ss_pred EEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc--eEEecCCCCcceEEEEEEe-CCCCEEEEE
Confidence 765421 122788888887 63 2333221 12344557899 999999987
Q ss_pred Eccc--cccEEEEEECCCCCceeEeeecccc------eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecC
Q 006375 193 SESK--ITRFVFYLDVSKPEELRVLTPRVVG------VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPH 264 (648)
Q Consensus 193 ~~~~--~~~~l~~~dl~~~~~~~~l~~~~~~------~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 264 (648)
+... ....|+++|+++++ .+.+...... ....|+|||+ +++.++.+ ...+|+.+++++ + .+.+..+
T Consensus 304 ~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~--g~~~l~~~~~~~-~-~~~l~~~ 377 (741)
T 2ecf_A 304 RQSRDQKKLDLVEVTLASNQ-QRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERT--GFQHLYRIDSKG-K-AAALTHG 377 (741)
T ss_dssp EEETTSSEEEEEEEETTTCC-EEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTT--SSCEEEEECSSS-C-EEESCCS
T ss_pred EecccCCeEEEEEEECCCCc-eEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCC--CccEEEEEcCCC-C-eeeeeec
Confidence 6533 35789999999987 5555433221 2356999999 66666653 346899999765 3 3324333
Q ss_pred CCCc-ccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCC
Q 006375 265 RESV-KLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRT 343 (648)
Q Consensus 265 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~ 343 (648)
.... .+..++++++.+++....++...+.+|+++..+..+..|+. ... +..+.++++++.+.+.++++..
T Consensus 378 ~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~------~~~---~~~~~~spdg~~l~~~~~~~~~ 448 (741)
T 2ecf_A 378 NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK------APG---MHSASFARNASVYVDSWSNNST 448 (741)
T ss_dssp SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC------SCS---EEEEEECTTSSEEEEEEEETTE
T ss_pred ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc------CCC---ceEEEECCCCCEEEEEecCCCC
Confidence 3222 11235556667887777666333444444432443333322 111 2234567899999999999999
Q ss_pred CCEEEEEECCCCcEEEEEEeeecC-----CCCCC--Cc-ceEEEEEeCCCC-eEEeEEEEEeeCccccCCCCcEEEEecC
Q 006375 344 PPSVYDYDMDMGISVLKKIETVLG-----GFDTN--NY-FTERKWASASDG-TQIPICIVYRKNLVKLDGSDPLLLYGYG 414 (648)
Q Consensus 344 P~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~--~~-~~~~~~~~s~~g-~~i~~~l~~~~~~~~~~~~~P~vl~~hG 414 (648)
|+.+|.++..+++.+ .+..... .+... .+ ..+.+.+++.+| .+|+++++.|++. ...++.|+||++||
T Consensus 449 p~~~~l~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~P~~~-~~~~~~p~vv~~hG 525 (741)
T 2ecf_A 449 PPQIELFRANGEKIA--TLVENDLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAGF-DPAKRYPVAVYVYG 525 (741)
T ss_dssp EEEEEEEETTSCEEE--CSSCCCSSSTTSTTHHHHTTCCCEEEEEEECTTSSCEEEEEEECCSSC-CTTSCEEEEEECCC
T ss_pred CCeEEEEEcCCCeEE--EeccCcccccccchhhhhccCCCcEEEEEEcCCCCEEEEEEEEeCCCC-CCCCCcCEEEEEcC
Confidence 999999998766522 2222111 11111 33 578899999999 9999999988875 44567899999999
Q ss_pred CCCCCC-CCCCc-----hhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEE
Q 006375 415 SYEICN-DPAFN-----SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLC 488 (648)
Q Consensus 415 g~~~~~-~~~~~-----~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~ 488 (648)
+++... ...|. ..+..|+++||+|+++|+||+|++|..|........+...++|+.+++++|.+++.+|+++|+
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~ 605 (741)
T 2ecf_A 526 GPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIG 605 (741)
T ss_dssp STTCCSCSSCCCCSHHHHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred CCCcccccccccccchhHHHHHHHhCCCEEEEEecCCCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEE
Confidence 877642 22344 457788899999999999999999999887766666667789999999999999888999999
Q ss_pred EEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccc-cc-cCCCC-CHHHHHHHHcCCccccCCCC
Q 006375 489 IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW-EE-WGDPW-KEEFYFYMKSYSPVDNVKAQ 565 (648)
Q Consensus 489 i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~-~~-~g~~~-~~~~~~~~~~~sp~~~~~~~ 565 (648)
++|+||||++++.++.++|++|+++|+.+|+.|+.... ..+ .. .+.|. .++ .+...+|+.++.++
T Consensus 606 l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i 673 (741)
T 2ecf_A 606 VQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLYD---------SHYTERYMDLPARNDA---GYREARVLTHIEGL 673 (741)
T ss_dssp EEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGGGSB---------HHHHHHHHCCTGGGHH---HHHHHCSGGGGGGC
T ss_pred EEEEChHHHHHHHHHHhCCCceEEEEEcCCCcchhhhc---------cccchhhcCCcccChh---hhhhcCHHHHHhhC
Confidence 99999999999999999999999999999998864211 111 11 24443 222 34567899989888
Q ss_pred CCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 566 NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 566 ~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
++| +||+||++|.+||+.++.+++++|+.++++.++++++ ++||+...... .+....+.+||.++|+
T Consensus 674 ~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~---~~~H~~~~~~~--~~~~~~i~~fl~~~l~ 740 (741)
T 2ecf_A 674 RSP-LLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYP---GAKHGLSGADA--LHRYRVAEAFLGRCLK 740 (741)
T ss_dssp CSC-EEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEET---TCCSSCCHHHH--HHHHHHHHHHHHHHHC
T ss_pred CCC-EEEEccCCCCCCCHHHHHHHHHHHHHCCCceEEEEEC---CCCCCCCCCch--hHHHHHHHHHHHHhcC
Confidence 988 9999999999999999999999999998888777775 88997653322 2234467899999986
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=411.45 Aligned_cols=525 Identities=13% Similarity=0.065 Sum_probs=357.8
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--------------------ccceeEEecCC-eEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--------------------VTASVEWAGNE-ALVY 141 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--------------------~~~~~~WspDg-~l~y 141 (648)
+..+.|||||++|||+.+ + +|+++|+++|+.+..+..+ ....++||||| .|+|
T Consensus 112 ~~~~~~SPDG~~la~~~~--~----~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~ 185 (719)
T 1z68_A 112 IQYLCWSPVGSKLAYVYQ--N----NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY 185 (719)
T ss_dssp BCCEEECSSTTCEEEEET--T----EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred cccceECCCCCEEEEEEC--C----eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence 467899999999999963 2 8999999998865432211 11369999999 9999
Q ss_pred EEeCCCC-----------------------------CCceEEEEECCCCCCC-cEEEEe----ecCCCeEEEEEeCCCCc
Q 006375 142 ITMDEIL-----------------------------RPDKAWLHKLEADQSN-DICLYH----EKDDIYSLGLQASESKK 187 (648)
Q Consensus 142 ~~~~~~~-----------------------------~~~~l~~~~l~~~~~~-~~~~~~----~~~~~~~~~~~~s~Dg~ 187 (648)
.+.++.. ...+|+.+++.++... ...+.. .........+.|||||+
T Consensus 186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~ 265 (719)
T 1z68_A 186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER 265 (719)
T ss_dssp EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE
T ss_pred EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe
Confidence 8875321 1236788888765210 011110 01233456789999987
Q ss_pred EEEEEEcc-ccccEEEEEE----CCCCCceeEeee----c-ccce------eeeEeecCCEEEEEeccCCCCCcEEEEEe
Q 006375 188 FLFIASES-KITRFVFYLD----VSKPEELRVLTP----R-VVGV------DTAASHRGNHFFITRRSDELFNSELLACP 251 (648)
Q Consensus 188 ~l~~~~~~-~~~~~l~~~d----l~~~~~~~~l~~----~-~~~~------~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 251 (648)
.++...++ ....+|+++| +++++ .+.+.. . ...+ ...|+|||+.|++.+... ....+|++++
T Consensus 266 ~~~~~~~~~~~~~~l~~~d~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~g~~~l~~~~ 343 (719)
T 1z68_A 266 VCLQWLKRVQNVSVLSICDFREDWQTWD-CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK-DGYKHIHYIK 343 (719)
T ss_dssp EEEEEEESSTTEEEEEEEEECSSSSSEE-CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT-TSCEEEEEES
T ss_pred EEEEEeccccCeEEEEEEcccCCCCCCc-eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc-CCceEEEEEE
Confidence 55543333 2347899999 77765 444431 2 1112 346999999998865532 3457899999
Q ss_pred CCCCCcceeEecCCCCcccceEEEeCCEEEEEEec----CCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCC
Q 006375 252 VDNTSETTVLIPHRESVKLQDIQLFIDHLAVYERE----GGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSES 327 (648)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~ 327 (648)
+++. ..+.+........-..+. +++.+++.... .+..+++.++++........++.. ++.....+....+
T Consensus 344 ~~~~-~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~----~~~~~~~~~~~~~ 417 (719)
T 1z68_A 344 DTVE-NAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH----LRKERCQYYTASF 417 (719)
T ss_dssp SCST-TCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT----TTTTTBCBEEEEE
T ss_pred CCCC-ceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc----cCCCCCceEEEEE
Confidence 8763 333344332221111122 66677777765 455667766664211112222210 1101111222445
Q ss_pred cccccEEEEEEeeCCCCCEEEEEECCCCcEE-EEEEeeec-CCCCCCCc-ceEEEEEeCCCCeEEeEEEEEeeCccccCC
Q 006375 328 VFSSRILRFHYSSLRTPPSVYDYDMDMGISV-LKKIETVL-GGFDTNNY-FTERKWASASDGTQIPICIVYRKNLVKLDG 404 (648)
Q Consensus 328 ~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~-~~~~~~~~-~~~~~~~~-~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~ 404 (648)
+++++.+++.+++++.| .++.+|+.+++.. ++...+.. ..++...+ ..+.+.+++.+ .+|+++++.|++. +.++
T Consensus 418 s~dg~~l~~~~s~~~~p-~~~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~P~~~-~~~~ 494 (719)
T 1z68_A 418 SDYAKYYALVCYGPGIP-ISTLHDGRTDQEIKILEENKELENALKNIQLPKEEIKKLEVDE-ITLWYKMILPPQF-DRSK 494 (719)
T ss_dssp CGGGSSEEEEECCBSSC-EEEEECSSSCCEEEEEECCHHHHHHTTSBCCCEEEEEEEEETT-EEEEEEEEECTTC-CSSS
T ss_pred CCCCCEEEEEcCCCCCC-eEEEEECCCCCEEEEeecchhhhhhhccccCCceEEEEEecCC-eEEEEEEEeCCCC-CCCC
Confidence 67888899999999888 6889999888732 22211110 12333334 56888999888 8999999999875 5567
Q ss_pred CCcEEEEecCCCCCCC-CCCCch-hHHHHH-HCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC
Q 006375 405 SDPLLLYGYGSYEICN-DPAFNS-SRLSLL-DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 481 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~-~~~~~~-~~~~l~-~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 481 (648)
+.|+||++||+++... ...|.. ....|+ ++||+|+++|+||+|++|..|........+...++|+.+++++|.+++.
T Consensus 495 ~~p~vl~~hG~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~ 574 (719)
T 1z68_A 495 KYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGF 574 (719)
T ss_dssp CEEEEEEECCCTTBCCCCCCCCCCHHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHHHTTSC
T ss_pred CccEEEEECCCCCcCcccccchhhHHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHHHhcCC
Confidence 7899999999887653 233432 233444 6899999999999999999998776666666789999999999999888
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccc--cccCCCCCHHHHHHHHcCCcc
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW--EEWGDPWKEEFYFYMKSYSPV 559 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~sp~ 559 (648)
+|++||+|+|+||||++++.++.++|++|+++|+.+|+.|+.... ..+ ..+|.|...+....+...+|.
T Consensus 575 ~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~---------~~~~~~~~g~~~~~~~~~~~~~~~~~ 645 (719)
T 1z68_A 575 IDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYA---------SVYTERFMGLPTKDDNLEHYKNSTVM 645 (719)
T ss_dssp EEEEEEEEEEETHHHHHHHHHHTTSSSCCSEEEEESCCCCTTTSB---------HHHHHHHHCCSSTTTTHHHHHHTCSG
T ss_pred CCCceEEEEEECHHHHHHHHHHHhCCCceEEEEEcCCccChHHhc---------cccchhhcCCcccccchhhhhhCCHh
Confidence 999999999999999999999999999999999999998864321 112 123555322223345678898
Q ss_pred ccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 560 DNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 560 ~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
.++.++++||+||+||++|.+||+.++.+++++|+.++++.++++++ ++||+...... .+....+.+||.++|+
T Consensus 646 ~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~---~~gH~~~~~~~--~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 646 ARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYS---DQNHGLSGLST--NHLYTHMTHFLKQCFS 719 (719)
T ss_dssp GGGGGGTTSEEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEET---TCCTTCCTHHH--HHHHHHHHHHHHHHHC
T ss_pred HHHhcCCCCcEEEEEeCCCCCcCHHHHHHHHHHHHHCCCceEEEEEC---cCCCCCCcccH--HHHHHHHHHHHHHhhC
Confidence 99999888669999999999999999999999999998888777775 88997732222 2234467899999885
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=403.94 Aligned_cols=510 Identities=14% Similarity=0.164 Sum_probs=359.7
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC-----CCeeeccccC---c-------------cceeEEecCC-eEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-----GTPVGKPLVG---V-------------TASVEWAGNE-ALV 140 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~-----g~~~~~~~~~---~-------------~~~~~WspDg-~l~ 140 (648)
+..++|||||++|||+.+ + +|+++|+++ ++.+...... + ...++||||| .|+
T Consensus 123 ~~~~~~SpdG~~la~~~~--~----~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la 196 (706)
T 2z3z_A 123 TASLDFSPVGDRVAYVRN--H----NLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLA 196 (706)
T ss_dssp CTTCEECTTSSEEEEEET--T----EEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEE
T ss_pred ccCCcCCCCCCEEEEEEC--C----eEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEE
Confidence 456899999999999743 3 799999998 8765432211 1 2569999999 999
Q ss_pred EEEeCCC----------------------------CCCceEEEEECCCCCCCcEEEEee-cCCCeEEEEEeCCCCcEEEE
Q 006375 141 YITMDEI----------------------------LRPDKAWLHKLEADQSNDICLYHE-KDDIYSLGLQASESKKFLFI 191 (648)
Q Consensus 141 y~~~~~~----------------------------~~~~~l~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~s~Dg~~l~~ 191 (648)
|.+.+.. ....+|+++++.++ +...+... ........+.|||||++|++
T Consensus 197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~--~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 274 (706)
T 2z3z_A 197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG--KTVYLQTGEPKEKFLTNLSWSPDENILYV 274 (706)
T ss_dssp EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT--EEEECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC--ceEeeccCCCCceeEeeEEEECCCCEEEE
Confidence 8875421 13356899999876 22222221 12234557899999999998
Q ss_pred EEccc--cccEEEEEECCCCCceeEeeecccc------eeeeEee--cCCEEEEEeccCCCCCcEEEEEeCCCCCcceeE
Q 006375 192 ASESK--ITRFVFYLDVSKPEELRVLTPRVVG------VDTAASH--RGNHFFITRRSDELFNSELLACPVDNTSETTVL 261 (648)
Q Consensus 192 ~~~~~--~~~~l~~~dl~~~~~~~~l~~~~~~------~~~~~s~--dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 261 (648)
.+.+. ....|+++|+++++..+.+...... ....|+| ||+. ++.++.+ ...+|+.++.++ +..+.+
T Consensus 275 ~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~-l~~~~~~--g~~~l~~~~~~~-~~~~~l 350 (706)
T 2z3z_A 275 AEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF-IWQSRRD--GWNHLYLYDTTG-RLIRQV 350 (706)
T ss_dssp EEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE-EEEECTT--SSCEEEEEETTS-CEEEEC
T ss_pred EEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE-EEEEccC--CccEEEEEECCC-CEEEec
Confidence 76443 3368999999998314444322111 1246999 9884 4555543 346899998654 333324
Q ss_pred ecCCCCcc-cceEEEeCCEEEEEEecCC--eeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEE
Q 006375 262 IPHRESVK-LQDIQLFIDHLAVYEREGG--LQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHY 338 (648)
Q Consensus 262 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~--~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ 338 (648)
..+..... +..++++++.+++....++ ...++.++++ ++.+..++. .. .+..+.++++++.+++..
T Consensus 351 ~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~------~~---~~~~~~~spdg~~l~~~~ 419 (706)
T 2z3z_A 351 TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK--GGKTKDLTP------ES---GMHRTQLSPDGSAIIDIF 419 (706)
T ss_dssp CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT--CCCCEESCC------SS---SEEEEEECTTSSEEEEEE
T ss_pred CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC--CCCceeccC------CC---ceEEEEECCCCCEEEEEe
Confidence 33322211 1244445567777776655 3577777766 333333221 11 122345678899999999
Q ss_pred eeCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCc-ceEEEEEeCCCC-eEEeEEEEEeeCccccCCCCcEEEEecCCC
Q 006375 339 SSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNY-FTERKWASASDG-TQIPICIVYRKNLVKLDGSDPLLLYGYGSY 416 (648)
Q Consensus 339 ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~g-~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~ 416 (648)
++...|+.++.+|+.+++..+ +.... .+....+ ..+.+.+++.+| .+++++++.|++. ..+++.|+||++|||+
T Consensus 420 ~~~~~p~~i~l~d~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~-~~~~~~p~iv~~HGg~ 495 (706)
T 2z3z_A 420 QSPTVPRKVTVTNIGKGSHTL--LEAKN-PDTGYAMPEIRTGTIMAADGQTPLYYKLTMPLHF-DPAKKYPVIVYVYGGP 495 (706)
T ss_dssp ECSSCSCEEEEEESSSCEEEE--EECC-------CCCCEEEEEEECTTSSSEEEEEEECCTTC-CTTSCEEEEEECCCCT
T ss_pred cCCCCCcEEEEEECCCCeEee--ccccc-hhhhcCCCCcEEEEEEcCCCCEEEEEEEEeCCCC-CCCCCccEEEEecCCC
Confidence 999999999999998887222 22111 2222222 467889999999 8999999999875 5556789999999987
Q ss_pred CCCCC-CCCch----hHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEe
Q 006375 417 EICND-PAFNS----SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEG 491 (648)
Q Consensus 417 ~~~~~-~~~~~----~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G 491 (648)
+.... ..|.. .++.|+++||.|+++|+||+|++|..|............++|+.+++++|.+++.+|++|++++|
T Consensus 496 ~~~~~~~~~~~~~~~~~~~la~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G 575 (706)
T 2z3z_A 496 HAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHG 575 (706)
T ss_dssp TCCCCCSCC----CCHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred CceeeccccccCchHHHHHHHhCCcEEEEEecCCCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEE
Confidence 76532 34544 46788899999999999999999999887766666667789999999999998888999999999
Q ss_pred eChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccc-cc-cCCCC-CHHHHHHHHcCCccccCCCCCCC
Q 006375 492 RSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW-EE-WGDPW-KEEFYFYMKSYSPVDNVKAQNYP 568 (648)
Q Consensus 492 ~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~-~~-~g~~~-~~~~~~~~~~~sp~~~~~~~~~P 568 (648)
+||||++++.++.++|++|+++|+.+|+.|+.... ..+ .. .+.|. .++. +...+|...+.++++|
T Consensus 576 ~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~P 643 (706)
T 2z3z_A 576 WSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYA---------IMYGERYFDAPQENPEG---YDAANLLKRAGDLKGR 643 (706)
T ss_dssp ETHHHHHHHHHHHHSTTTEEEEEEESCCCCGGGSB---------HHHHHHHHCCTTTCHHH---HHHHCGGGGGGGCCSE
T ss_pred EChHHHHHHHHHHhCCCcEEEEEEcCCccchHHHH---------hhhhhhhcCCcccChhh---hhhCCHhHhHHhCCCC
Confidence 99999999999999999999999999998864321 112 11 25553 3443 3567888888888887
Q ss_pred eEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 569 HILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 569 ~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
+||+||++|.+||+.++.+++++|+.++++.++++++ ++||+....... +....+.+||.++|
T Consensus 644 -~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~---~~gH~~~~~~~~--~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 644 -LMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYP---SHEHNVMGPDRV--HLYETITRYFTDHL 706 (706)
T ss_dssp -EEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEET---TCCSSCCTTHHH--HHHHHHHHHHHHHC
T ss_pred -EEEEeeCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeC---CCCCCCCcccHH--HHHHHHHHHHHHhC
Confidence 9999999999999999999999999998888877776 889976544222 23446789998875
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=411.17 Aligned_cols=521 Identities=13% Similarity=0.132 Sum_probs=353.3
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc---Cc-----------------cceeEEecCC-eEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GV-----------------TASVEWAGNE-ALVY 141 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~---~~-----------------~~~~~WspDg-~l~y 141 (648)
+..++|||||++|||..+ + +|+++|+++|+.+..+.. ++ ...++||||| .|+|
T Consensus 116 ~~~~~~SPdG~~la~~~~--~----~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~ 189 (723)
T 1xfd_A 116 LQYAGWGPKGQQLIFIFE--N----NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY 189 (723)
T ss_dssp CSBCCBCSSTTCEEEEET--T----EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEE
T ss_pred ccccEECCCCCEEEEEEC--C----eEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEE
Confidence 557899999999999986 2 799999999876543221 11 1459999999 9999
Q ss_pred EEeCCCC-----------------------------CCceEEEEECCCCCCCcEEEEeecC-----CCeEEEEEeCCCCc
Q 006375 142 ITMDEIL-----------------------------RPDKAWLHKLEADQSNDICLYHEKD-----DIYSLGLQASESKK 187 (648)
Q Consensus 142 ~~~~~~~-----------------------------~~~~l~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~s~Dg~ 187 (648)
.+.+... ....|+.+++.++.. ...+.... ......+.|||||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~l~~~~~~~~~~~~~~~~~~SpDg~ 267 (723)
T 1xfd_A 190 AAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPPDDPRMREYYITMVKWATSTK 267 (723)
T ss_dssp EEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred EEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce--eEEeeCCccCCCccceeEEEEEeCCCe
Confidence 8865311 123688889887631 12222211 23445789999999
Q ss_pred EEEEEEccc-cccEEEEEECCCCCceeEeeec-ccc------eeeeEeecCCEEEEE-eccCC--CCCcEEEEEe-CCCC
Q 006375 188 FLFIASESK-ITRFVFYLDVSKPEELRVLTPR-VVG------VDTAASHRGNHFFIT-RRSDE--LFNSELLACP-VDNT 255 (648)
Q Consensus 188 ~l~~~~~~~-~~~~l~~~dl~~~~~~~~l~~~-~~~------~~~~~s~dg~~l~~~-~~~~~--~~~~~l~~~~-~~~~ 255 (648)
+|++.+++. ....|+++|+++++ .+.+... ..+ ....|||||++|++. +..++ ....+|+.++ ..+
T Consensus 268 ~l~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~- 345 (723)
T 1xfd_A 268 VAVTWLNRAQNVSILTLCDATTGV-CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN- 345 (723)
T ss_dssp EEEEEEETTSCEEEEEEEETTTCC-EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC-
T ss_pred EEEEEEcCCCCeEEEEEEeCCCCc-ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC-
Confidence 887665543 44789999999987 5544322 111 145699999999997 44422 1245899999 444
Q ss_pred Cc---ceeEecCCCCc-ccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCC-cccccCCCceeecCCCeeeeeCCCCccc
Q 006375 256 SE---TTVLIPHRESV-KLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGE-PLKSLQGGKSVEFIDPVYSIDPSESVFS 330 (648)
Q Consensus 256 ~~---~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~-~~~~l~~~~~i~~~~~~~~v~~~~~~~~ 330 (648)
+. .+.+....... ....++++++.+++....++...+.+|+++..+. ....++.. +. +...+..+.++++
T Consensus 346 ~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~----~~-~~~~~~~~~~spd 420 (723)
T 1xfd_A 346 SSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD----LV-ENCTYFSASFSHS 420 (723)
T ss_dssp SSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT----SS-SSCCCCEEEECTT
T ss_pred CCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc----cc-CCCCeEEEEECCC
Confidence 33 33233322222 1124555667887777665223334444443343 22222210 00 1112333556788
Q ss_pred ccEEEEEEeeCCCCCEEEEEECCCCcEEEEEEeee--c-CCCCCCCc-ceEEEEEeCCCCeEEeEEEEEeeCccccCCCC
Q 006375 331 SRILRFHYSSLRTPPSVYDYDMDMGISVLKKIETV--L-GGFDTNNY-FTERKWASASDGTQIPICIVYRKNLVKLDGSD 406 (648)
Q Consensus 331 ~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~--~-~~~~~~~~-~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~ 406 (648)
++.+++.++++..|..++. +..+++. +..+... . ..+....+ ..+.+.+++.+| +|+++++.|++. ...++.
T Consensus 421 g~~l~~~~~~~~~p~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~P~~~-~~~~~~ 496 (723)
T 1xfd_A 421 MDFFLLKCEGPGVPMVTVH-NTTDKKK-MFDLETNEHVKKAINDRQMPKVEYRDIEIDDY-NLPMQILKPATF-TDTTHY 496 (723)
T ss_dssp SSEEEEECCSSSSCCEEEE-ETTTCCE-EEEEECCHHHHHHHHTSCCCBCCBCCEEETTE-EECCBEEBCSSC-CSSSCE
T ss_pred CCEEEEEccCCCCCeEEEE-ECCCCCE-EEEeccChhhhhhhhhccCCCceEEEEEcCCc-eEEEEEEeCCCC-CCCCcc
Confidence 9999999999999987664 7666552 2112111 0 01111122 467788888899 999999999875 556789
Q ss_pred cEEEEecCCCCCCC-CCCCc--hhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 407 PLLLYGYGSYEICN-DPAFN--SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 407 P~vl~~hGg~~~~~-~~~~~--~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
|+||++||+++... ...|. .....|+++||+|+++|+||+|++|..|............++|+.+++++|.+++.+|
T Consensus 497 p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d 576 (723)
T 1xfd_A 497 PLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYID 576 (723)
T ss_dssp EEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEE
T ss_pred CEEEEEcCCCCccccCccccccHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcC
Confidence 99999999887642 22333 4455667789999999999999999998876555555568999999999999988889
Q ss_pred CCeEEEEeeChhHHHHHHHHhhC----CCceeEEEecCCcccccccccCCCCCCCcccc--cccCCCC-CHHHHHHHHcC
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMR----PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW--EEWGDPW-KEEFYFYMKSY 556 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~----p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~--~~~g~~~-~~~~~~~~~~~ 556 (648)
++||+|+|+||||++++.++.++ |++|+++|+.+|+.++.... ..+ ...|.|. ..+ .+...
T Consensus 577 ~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~---~~~~~ 644 (723)
T 1xfd_A 577 RTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYA---------SAFSERYLGLHGLDNR---AYEMT 644 (723)
T ss_dssp EEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSB---------HHHHHHHHCCCSSCCS---STTTT
T ss_pred hhhEEEEEECHHHHHHHHHHHhccccCCCeEEEEEEccCCcchHHhh---------hhccHhhcCCccCChh---HHHhc
Confidence 99999999999999999999999 99999999999988764321 111 1124442 222 12456
Q ss_pred CccccCCCCC-CCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 557 SPVDNVKAQN-YPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 557 sp~~~~~~~~-~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
+|..++.+++ +| +||+||++|.+||+.++.+++++|+.++.+.++++++ ++||+.... ....+....+.+||.+
T Consensus 645 ~~~~~~~~~~~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~---~~~H~~~~~-~~~~~~~~~i~~fl~~ 719 (723)
T 1xfd_A 645 KVAHRVSALEEQQ-FLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYP---DESHYFTSS-SLKQHLYRSIINFFVE 719 (723)
T ss_dssp CTHHHHTSCCSCE-EEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEET---TCCSSCCCH-HHHHHHHHHHHHHHTT
T ss_pred ChhhHHhhcCCCC-EEEEEeCCCCCcCHhHHHHHHHHHHHCCCCeEEEEEC---CCCcccccC-cchHHHHHHHHHHHHH
Confidence 7777788887 56 9999999999999999999999999998888877776 889976321 1122234467899999
Q ss_pred hcCC
Q 006375 636 ALSM 639 (648)
Q Consensus 636 ~l~~ 639 (648)
+|++
T Consensus 720 ~l~~ 723 (723)
T 1xfd_A 720 CFRI 723 (723)
T ss_dssp TTCC
T ss_pred HhcC
Confidence 8874
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=231.58 Aligned_cols=279 Identities=16% Similarity=0.049 Sum_probs=195.8
Q ss_pred EEEEEeeCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEec
Q 006375 334 LRFHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGY 413 (648)
Q Consensus 334 l~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~h 413 (648)
+++..+++.+|.++|.++..+..............++......+++++++ +|.+|+++++.|++. ++.|+||++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-dg~~i~~~l~~p~~~----~~~P~vl~~h 159 (386)
T 2jbw_A 85 LLMSAALCAQYAQFLWFDERRQKGQARKVELYQKAAPLLSPPAERHELVV-DGIPMPVYVRIPEGP----GPHPAVIMLG 159 (386)
T ss_dssp HHHHHHHHHHHHHTTCCSTHHHHHHHHHHHHHHHHGGGSSSCEEEEEEEE-TTEEEEEEEECCSSS----CCEEEEEEEC
T ss_pred HHHHHHHhhceeeeeccCCCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEe-CCEEEEEEEEcCCCC----CCCCEEEEeC
Confidence 55666777788887776543211000001111112232345688999988 899999998888763 5689999998
Q ss_pred CCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeC
Q 006375 414 GSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRS 493 (648)
Q Consensus 414 Gg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S 493 (648)
|+.+.. ...+. ....|+++||.|+++|+||+|+.. ..........+++.+++++|.+++.+|+++|+|+|+|
T Consensus 160 G~~~~~-~~~~~-~~~~l~~~G~~v~~~d~rG~G~s~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S 231 (386)
T 2jbw_A 160 GLESTK-EESFQ-MENLVLDRGMATATFDGPGQGEMF------EYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRS 231 (386)
T ss_dssp CSSCCT-TTTHH-HHHHHHHTTCEEEEECCTTSGGGT------TTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEET
T ss_pred CCCccH-HHHHH-HHHHHHhCCCEEEEECCCCCCCCC------CCCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEC
Confidence 865433 22233 377889999999999999987651 1112233445679999999999988999999999999
Q ss_pred hhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcc--cccccCCCCCHHHH-HHHHcCCccccCCCCCCCeE
Q 006375 494 AGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTA--EWEEWGDPWKEEFY-FYMKSYSPVDNVKAQNYPHI 570 (648)
Q Consensus 494 ~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~sp~~~~~~~~~P~~ 570 (648)
+||++++.++.+ |++|+++|+. |+.|+..... ..+.... ....+|.+...+.+ ..+..++|..++.++++| +
T Consensus 232 ~GG~la~~~a~~-~~~~~a~v~~-~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P-~ 306 (386)
T 2jbw_A 232 LGGNYALKSAAC-EPRLAACISW-GGFSDLDYWD--LETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACP-T 306 (386)
T ss_dssp HHHHHHHHHHHH-CTTCCEEEEE-SCCSCSTTGG--GSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSC-E
T ss_pred hHHHHHHHHHcC-CcceeEEEEe-ccCChHHHHH--hccHHHHHHHHHHhCCCCHHHHHHHHHHhCChhhhhcccCCC-E
Confidence 999999999998 8899999999 9988755431 1110000 01234554444455 667889999889998998 9
Q ss_pred EEeecCCCCccCCchHHHHHHHH-HhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCC
Q 006375 571 LVTAGLNDPRVMYSEPAKFVAKL-REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 571 li~~g~~D~~v~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
|+++|++|. ||+.++.++++++ +. +.++++++ ++||+....... ....+.+||.++|+..
T Consensus 307 Lii~G~~D~-v~~~~~~~l~~~l~~~---~~~~~~~~---~~gH~~~~~~~~---~~~~i~~fl~~~l~~~ 367 (386)
T 2jbw_A 307 YILHGVHDE-VPLSFVDTVLELVPAE---HLNLVVEK---DGDHCCHNLGIR---PRLEMADWLYDVLVAG 367 (386)
T ss_dssp EEEEETTSS-SCTHHHHHHHHHSCGG---GEEEEEET---TCCGGGGGGTTH---HHHHHHHHHHHHHTSS
T ss_pred EEEECCCCC-CCHHHHHHHHHHhcCC---CcEEEEeC---CCCcCCccchHH---HHHHHHHHHHHhcCCc
Confidence 999999999 9999999999998 54 34455554 789965332222 2335789999999865
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-26 Score=235.37 Aligned_cols=247 Identities=19% Similarity=0.155 Sum_probs=178.0
Q ss_pred CCCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCC
Q 006375 371 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG 450 (648)
Q Consensus 371 ~~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g 450 (648)
...+..+++++++.+|.+|+++++.|++. +++.|+||++||+.+.. .+......|+++||+|+++|+||.|+++
T Consensus 63 ~~~~~~~~~~~~~~dg~~i~~~~~~P~~~---~~~~p~vv~~HG~g~~~---~~~~~~~~l~~~G~~v~~~d~rG~g~s~ 136 (337)
T 1vlq_A 63 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE---EEKLPCVVQYIGYNGGR---GFPHDWLFWPSMGYICFVMDTRGQGSGW 136 (337)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS---CSSEEEEEECCCTTCCC---CCGGGGCHHHHTTCEEEEECCTTCCCSS
T ss_pred CCCeEEEEEEEEcCCCCEEEEEEEecCCC---CCCccEEEEEcCCCCCC---CCchhhcchhhCCCEEEEecCCCCCCcc
Confidence 44567899999999999999999988763 35689999999976543 2334456788899999999999999654
Q ss_pred hhh-----------------hhcccccCC----CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCc
Q 006375 451 RQW-----------------YENGKFLKK----KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL 509 (648)
Q Consensus 451 ~~~-----------------~~~~~~~~~----~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~ 509 (648)
... ...+..... ...++|+.+++++|.++..+|+++|+++|+|+||.+++.++.++| .
T Consensus 137 ~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p-~ 215 (337)
T 1vlq_A 137 LKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-K 215 (337)
T ss_dssp SCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-S
T ss_pred cCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCC-C
Confidence 320 000000000 145789999999999998889999999999999999999999998 4
Q ss_pred eeEEEecCCccccccccc--CCCCCCCccccccc--CCCC-CHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCc
Q 006375 510 FKAAVAAVPFVDVLTTML--DPTIPLTTAEWEEW--GDPW-KEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYS 584 (648)
Q Consensus 510 ~~a~v~~~~~~d~~~~~~--~~~~~~~~~~~~~~--g~~~-~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~ 584 (648)
++++|+.+|+++...... ....++ ..+.++ ..+. ..+.+..+..++|...++++++| +|+++|++|.+||+.
T Consensus 216 v~~~vl~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~lii~G~~D~~~p~~ 292 (337)
T 1vlq_A 216 AKALLCDVPFLCHFRRAVQLVDTHPY--AEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIP-ALFSVGLMDNICPPS 292 (337)
T ss_dssp CCEEEEESCCSCCHHHHHHHCCCTTH--HHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSC-EEEEEETTCSSSCHH
T ss_pred ccEEEECCCcccCHHHHHhcCCCcch--HHHHHHHHhCchhHHHHHHhhhhccHHHHHHHcCCC-EEEEeeCCCCCCCch
Confidence 899999999765433221 111111 111111 2332 33455566778898888888887 999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 585 EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 585 ~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
++.+++++++. +.++++++ ++||+... .+ ....+++||.++|+
T Consensus 293 ~~~~~~~~l~~---~~~~~~~~---~~gH~~~~--~~---~~~~~~~fl~~~l~ 335 (337)
T 1vlq_A 293 TVFAAYNYYAG---PKEIRIYP---YNNHEGGG--SF---QAVEQVKFLKKLFE 335 (337)
T ss_dssp HHHHHHHHCCS---SEEEEEET---TCCTTTTH--HH---HHHHHHHHHHHHHC
T ss_pred hHHHHHHhcCC---CcEEEEcC---CCCCCCcc--hh---hHHHHHHHHHHHHh
Confidence 99999988864 34455554 88997521 12 23467899999886
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-24 Score=210.44 Aligned_cols=215 Identities=18% Similarity=0.114 Sum_probs=140.8
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 455 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 455 (648)
.|+.+....||.+|+++|..|++. ++.|+||++||+.+....+.+...++.|+++||+|+.+|+||+|+.+.....
T Consensus 30 ~e~~~~~~~dG~~i~g~l~~P~~~----~~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~~~~~ 105 (259)
T 4ao6_A 30 QERGFSLEVDGRTVPGVYWSPAEG----SSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAG 105 (259)
T ss_dssp EEEEEEEEETTEEEEEEEEEESSS----CCSEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCCC----------
T ss_pred eEEEEEEeeCCeEEEEEEEeCCCC----CCCCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccCCCCCCCCcccc
Confidence 444444557999999999999764 5679999999987766556677778899999999999999999876554332
Q ss_pred cccccCC---------------CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 456 NGKFLKK---------------KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 456 ~~~~~~~---------------~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
....... ...+.|..+++++|... +|+++|+++|+|+||++++.++...|+ ++|+|+..+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~pr-i~Aav~~~~~~ 182 (259)
T 4ao6_A 106 REPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKR-IKVALLGLMGV 182 (259)
T ss_dssp ---CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCTT-EEEEEEESCCT
T ss_pred cccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCCc-eEEEEEecccc
Confidence 1111100 12346778888888654 688999999999999999999999885 66666554332
Q ss_pred cccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCC
Q 006375 521 DVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 600 (648)
Q Consensus 521 d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~ 600 (648)
+.. . ..++...+.++++| +||+||++|++||+.+++++++++... ++
T Consensus 183 ~~~----------------------~--------~~~~~~~a~~i~~P-~Li~hG~~D~~vp~~~~~~l~~al~~~--~k 229 (259)
T 4ao6_A 183 EGV----------------------N--------GEDLVRLAPQVTCP-VRYLLQWDDELVSLQSGLELFGKLGTK--QK 229 (259)
T ss_dssp TST----------------------T--------HHHHHHHGGGCCSC-EEEEEETTCSSSCHHHHHHHHHHCCCS--SE
T ss_pred ccc----------------------c--------ccchhhhhccCCCC-EEEEecCCCCCCCHHHHHHHHHHhCCC--Ce
Confidence 110 0 01233446677888 999999999999999999999988532 33
Q ss_pred CeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 601 NILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 601 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
.++++ .++|... .+.+ .....++||.++|+
T Consensus 230 ~l~~~----~G~H~~~-p~~e---~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 230 TLHVN----PGKHSAV-PTWE---MFAGTVDYLDQRLK 259 (259)
T ss_dssp EEEEE----SSCTTCC-CHHH---HTHHHHHHHHHHCC
T ss_pred EEEEe----CCCCCCc-CHHH---HHHHHHHHHHHhcC
Confidence 33333 3466432 2222 33456899999985
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-23 Score=198.89 Aligned_cols=225 Identities=16% Similarity=0.164 Sum_probs=163.1
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChh
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 452 (648)
.+..+.+.+++ +|.+++++++.|++. .++.|+||++||..+.. ..+...+..|+++||.|+++|+||.|+....
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~p~~~---~~~~p~vv~~HG~~g~~--~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~~ 76 (241)
T 3f67_A 3 AIIAGETSIPS-QGENMPAYHARPKNA---DGPLPIVIVVQEIFGVH--EHIRDLCRRLAQEGYLAIAPELYFRQGDPNE 76 (241)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEETTC---CSCEEEEEEECCTTCSC--HHHHHHHHHHHHTTCEEEEECTTTTTCCGGG
T ss_pred cceeeeEEEec-CCcceEEEEecCCCC---CCCCCEEEEEcCcCccC--HHHHHHHHHHHHCCcEEEEecccccCCCCCc
Confidence 45677888887 888999998888753 35689999999965543 3355556788899999999999998766543
Q ss_pred hhhcccc-------cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccc
Q 006375 453 WYENGKF-------LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 525 (648)
Q Consensus 453 ~~~~~~~-------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~ 525 (648)
+...... .......+|+.+++++|.+++ +|+++|+++|+|+||.+++.++.++|+ ++++|+..|......
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~~~~- 153 (241)
T 3f67_A 77 YHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLVGEK- 153 (241)
T ss_dssp CCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCSCCC-
T ss_pred hhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEeccccCCC-
Confidence 3211110 111235789999999999887 888999999999999999999999997 677777655422100
Q ss_pred ccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEE
Q 006375 526 MLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 605 (648)
Q Consensus 526 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 605 (648)
.. +...+|...+.++++| +|+++|++|..||+.++.++++++++.+.+.+++++
T Consensus 154 -------------~~------------~~~~~~~~~~~~~~~P-~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ 207 (241)
T 3f67_A 154 -------------SL------------NSPKHPVDIAVDLNAP-VLGLYGAKDASIPQDTVETMRQALRAANATAEIVVY 207 (241)
T ss_dssp -------------CS------------SSCCCHHHHGGGCCSC-EEEEEETTCTTSCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred -------------cc------------CCccCHHHhhhhcCCC-EEEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 00 0123455556667787 999999999999999999999999998877776666
Q ss_pred EecCCCCccCCCc------hHHHHHHHHHHHHHHHH
Q 006375 606 KCELGAGHFSKSG------RFERLREAAFTYTFLMR 635 (648)
Q Consensus 606 ~~~~~~gH~~~~~------~~~~~~~~~~~~~fl~~ 635 (648)
+ +++|..... .....+....+.+||.+
T Consensus 208 ~---~~~H~~~~~~~~~~~~~~~~~~~~~~~~fl~~ 240 (241)
T 3f67_A 208 P---EADHAFNADYRASYHEESAKDGWQRMLAWFAQ 240 (241)
T ss_dssp T---TCCTTTTCTTSTTCCHHHHHHHHHHHHHHHTT
T ss_pred C---CCCcceecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 5 889966421 22222234456788865
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=201.31 Aligned_cols=239 Identities=13% Similarity=0.089 Sum_probs=167.8
Q ss_pred EEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCC-CCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcc
Q 006375 379 KWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG 457 (648)
Q Consensus 379 ~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~ 457 (648)
..+.+.+|.++.+++..|... ..+++.|+||++|||... .....+...+..|+++||.|+++|+||.|+... +
T Consensus 17 ~~~~~~~g~~l~~~~~~~~~~-~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~-~---- 90 (276)
T 3hxk_A 17 STFSLNDTAWVDFYQLQNPRQ-NENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGTN-Y---- 90 (276)
T ss_dssp EECCCBTTBEEEEECCCC-------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCCC-S----
T ss_pred ccccCCCCeEEEEEEeCCccc-ccCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcCC-C----
Confidence 345677888888875544432 233678999999996533 233345566678889999999999999876321 0
Q ss_pred cccCCCCcHhHHHHHHHHHHHcC---CCCCCeEEEEeeChhHHHHHHHHhh-CCCceeEEEecCCcccccccccCCCCCC
Q 006375 458 KFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNM-RPDLFKAAVAAVPFVDVLTTMLDPTIPL 533 (648)
Q Consensus 458 ~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~ 533 (648)
......++|+.++++++.+.. .+|+++|+++|+|+||.+++.++.+ .+..++++|+.+|++++..... ..+
T Consensus 91 --~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~--~~~- 165 (276)
T 3hxk_A 91 --NFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWP--SDL- 165 (276)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCS--SSS-
T ss_pred --CcCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhCC--cch-
Confidence 001135689999999998864 3788999999999999999999987 6889999999999988654321 110
Q ss_pred CcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCc
Q 006375 534 TTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGH 613 (648)
Q Consensus 534 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH 613 (648)
.+..+- +... ..++|...+.++.+| +|++||++|..||+.++.+++++|+..+.+.++++++ ++||
T Consensus 166 ---~~~~~~-~~~~------~~~~~~~~~~~~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~---~~~H 231 (276)
T 3hxk_A 166 ---SHFNFE-IENI------SEYNISEKVTSSTPP-TFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFE---SGPH 231 (276)
T ss_dssp ---SSSCCC-CSCC------GGGBTTTTCCTTSCC-EEEEEETTCSSSCTHHHHHHHHHHHTTTCCEEEEEES---CCCT
T ss_pred ---hhhhcC-chhh------hhCChhhccccCCCC-EEEEecCCCceeChHHHHHHHHHHHHcCCCeEEEEEC---CCCC
Confidence 111111 1110 346777778887887 9999999999999999999999999988887777775 8899
Q ss_pred cCCCchH-----------HHHHHHHHHHHHHHHhcCCCCC
Q 006375 614 FSKSGRF-----------ERLREAAFTYTFLMRALSMLPS 642 (648)
Q Consensus 614 ~~~~~~~-----------~~~~~~~~~~~fl~~~l~~~~~ 642 (648)
....... ...+......+||.++....++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~ 271 (276)
T 3hxk_A 232 GVSLANRTTAPSDAYCLPSVHRWVSWASDWLERQIKNLEH 271 (276)
T ss_dssp TCTTCSTTSCSSSTTCCHHHHTHHHHHHHHHHHHHHTTC-
T ss_pred CccccCccccccccccCchHHHHHHHHHHHHHhCcccccc
Confidence 5533211 2222334567999998865433
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=209.39 Aligned_cols=283 Identities=13% Similarity=0.068 Sum_probs=170.1
Q ss_pred cccEEEEEEeeCCCCCEEEEEECCCCcEEEEEE---eeecCCCCC---CCcceEEEEEeCCCCeEEeEEEEEeeCccccC
Q 006375 330 SSRILRFHYSSLRTPPSVYDYDMDMGISVLKKI---ETVLGGFDT---NNYFTERKWASASDGTQIPICIVYRKNLVKLD 403 (648)
Q Consensus 330 ~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~ 403 (648)
+.+++.|.++++..|...++++. +|+ +.++ ....+..++ ..+..+++.+.+ +..+++.++.|+.....+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~g~--~~r~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~~P~~~~~~~ 80 (338)
T 2o7r_A 6 LETTGSSDPNTNLLKYLPIVLNP-DRT--ITRPIQIPSTAASPDPTSSSPVLTKDLALNP--LHNTFVRLFLPRHALYNS 80 (338)
T ss_dssp ------------CTTTCSCEECT-TSC--EECCSCCCBCCCCCCTTSSCSEEEEEEEEET--TTTEEEEEEEEGGGGGSS
T ss_pred CCCceeeccCcccccccceEECC-CCe--EEecCCCCCCCCCCCcccCCCEEEEEEEecC--CCCeEEEEEeCCCCCcCC
Confidence 45567888888888877777765 444 2221 111112233 456788888876 445777777886520134
Q ss_pred CCCcEEEEecCCCCCCCCCC---CchhHHHHH-HCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc
Q 006375 404 GSDPLLLYGYGSYEICNDPA---FNSSRLSLL-DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~---~~~~~~~l~-~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 479 (648)
++.|+||++|||........ |......|+ ++||+|+++|+||+++.. ....++|+.++++||.++
T Consensus 81 ~~~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~~~-----------~~~~~~d~~~~~~~l~~~ 149 (338)
T 2o7r_A 81 AKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAPEHR-----------LPAAYDDAMEALQWIKDS 149 (338)
T ss_dssp CCEEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCTTTTC-----------TTHHHHHHHHHHHHHHTC
T ss_pred CCceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCCCCCC-----------CchHHHHHHHHHHHHHhC
Confidence 67899999999764443322 555567777 689999999999987642 124578999999999986
Q ss_pred C------CCCCCeEEEEeeChhHHHHHHHHhhCCC--------ceeEEEecCCcccccccccC----CCCCCCcc-----
Q 006375 480 C------YCTKEKLCIEGRSAGGLLIGAVLNMRPD--------LFKAAVAAVPFVDVLTTMLD----PTIPLTTA----- 536 (648)
Q Consensus 480 ~------~~d~~~i~i~G~S~GG~l~~~~~~~~p~--------~~~a~v~~~~~~d~~~~~~~----~~~~~~~~----- 536 (648)
. .+|+++++++|+||||++++.++.++|+ +++++|+.+|+.+....... ...+....
T Consensus 150 ~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (338)
T 2o7r_A 150 RDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTGSELRLANDSRLPTFVLDL 229 (338)
T ss_dssp CCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCCSSCCHHHHHTTTCSSSCHHHHHH
T ss_pred CcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCCCcCChhhhccCCCcccCHHHHHH
Confidence 3 2677999999999999999999999888 89999999998775432100 00000000
Q ss_pred ccccc---CCCCCHHHHHHHHcCCccc------cCCCC-CCC-eEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEE
Q 006375 537 EWEEW---GDPWKEEFYFYMKSYSPVD------NVKAQ-NYP-HILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 605 (648)
Q Consensus 537 ~~~~~---g~~~~~~~~~~~~~~sp~~------~~~~~-~~P-~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 605 (648)
.|..+ +...+. ...+|+. ++.++ ++| |+||++|++|..|+ ++.+++++|++++.+.+++++
T Consensus 230 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~P~Lvi~G~~D~~~~--~~~~~~~~l~~~~~~~~~~~~ 301 (338)
T 2o7r_A 230 IWELSLPMGADRDH------EYCNPTAESEPLYSFDKIRSLGWRVMVVGCHGDPMID--RQMELAERLEKKGVDVVAQFD 301 (338)
T ss_dssp HHHHHSCTTCCTTS------TTTCCC----CCTHHHHHHHHTCEEEEEEETTSTTHH--HHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhCCCCCCCCC------cccCCCCCCcccccHhhhcCCCCCEEEEECCCCcchH--HHHHHHHHHHHCCCcEEEEEE
Confidence 00000 000000 0011211 11222 243 59999999999987 678899999988877666666
Q ss_pred EecCCCCccCCCchHHH-HHHHHHHHHHHHHhcCC
Q 006375 606 KCELGAGHFSKSGRFER-LREAAFTYTFLMRALSM 639 (648)
Q Consensus 606 ~~~~~~gH~~~~~~~~~-~~~~~~~~~fl~~~l~~ 639 (648)
+ ++||.......+. .+....+.+||.++++.
T Consensus 302 ~---g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~~~ 333 (338)
T 2o7r_A 302 V---GGYHAVKLEDPEKAKQFFVILKKFVVDSCTT 333 (338)
T ss_dssp S---SCCTTGGGTCHHHHHHHHHHHHHHHC-----
T ss_pred C---CCceEEeccChHHHHHHHHHHHHHHHhhccc
Confidence 5 8899654322222 22344678999988764
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-22 Score=196.51 Aligned_cols=235 Identities=11% Similarity=0.080 Sum_probs=161.7
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCcc--ccCCCCcEEEEecCCCCCC-CCCCCchhHHHHHHCCCEEEEEccCCCCCCCh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLV--KLDGSDPLLLYGYGSYEIC-NDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~--~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 451 (648)
..+.+.+. .+|.++++.++.|+... ...++.|+||++|||.... ....+...+..|+++||.|+++|+||+|+.+.
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~ 81 (277)
T 3bxp_A 3 QVEQRTLN-TAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQS 81 (277)
T ss_dssp EEEEEEEC-STTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCCSTTTCC
T ss_pred ceEEEEec-cCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEecccCCCCCc
Confidence 34566664 56777999988887310 1245689999999964332 23345556678888999999999999763322
Q ss_pred hhhhcccccCCCCcHhHHHHHHHHHHHcC---CCCCCeEEEEeeChhHHHHHHHHhhC--------------CCceeEEE
Q 006375 452 QWYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMR--------------PDLFKAAV 514 (648)
Q Consensus 452 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--------------p~~~~a~v 514 (648)
.....++|+.++++++.+.. .+|+++|+++|+|+||.+++.++.++ |..++++|
T Consensus 82 ---------~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~v 152 (277)
T 3bxp_A 82 ---------VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAII 152 (277)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSEEE
T ss_pred ---------cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCEEE
Confidence 12245789999999998762 26788999999999999999999875 67899999
Q ss_pred ecCCcccccccccCCCCCCCccccc-ccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHH
Q 006375 515 AAVPFVDVLTTMLDPTIPLTTAEWE-EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKL 593 (648)
Q Consensus 515 ~~~~~~d~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l 593 (648)
+.+|++++...+. . ...+. .+- ......+|...+.++..| +||+||++|..||+.++.+++++|
T Consensus 153 ~~~p~~~~~~~~~-----~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~P-~lii~G~~D~~vp~~~~~~~~~~l 217 (277)
T 3bxp_A 153 LGYPVIDLTAGFP-----T-TSAARNQIT--------TDARLWAAQRLVTPASKP-AFVWQTATDESVPPINSLKYVQAM 217 (277)
T ss_dssp EESCCCBTTSSSS-----S-SHHHHHHHC--------SCGGGSBGGGGCCTTSCC-EEEEECTTCCCSCTHHHHHHHHHH
T ss_pred EeCCcccCCCCCC-----C-ccccchhcc--------chhhhcCHhhccccCCCC-EEEEeeCCCCccChHHHHHHHHHH
Confidence 9999987532210 0 00001 110 012346777777777777 999999999999999999999999
Q ss_pred HhcCCCCCeEEEEecCCCCccCCCch-------------HHHHHHHHHHHHHHHHhc
Q 006375 594 REMKTDDNILLFKCELGAGHFSKSGR-------------FERLREAAFTYTFLMRAL 637 (648)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~gH~~~~~~-------------~~~~~~~~~~~~fl~~~l 637 (648)
++.+.+.++++++ +++|...... ....+....+.+||.++.
T Consensus 218 ~~~~~~~~~~~~~---~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 271 (277)
T 3bxp_A 218 LQHQVATAYHLFG---SGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQG 271 (277)
T ss_dssp HHTTCCEEEEECC---CC----------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCeEEEEEeC---CCCcccccccccccCccccccccchHHHHHHHHHHHHHhcc
Confidence 9988776666665 8899543221 112223446789998764
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=200.18 Aligned_cols=235 Identities=15% Similarity=0.102 Sum_probs=165.1
Q ss_pred CCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCC-CCCCCchhHHHHHH-CCCEEEEEccCCCCCC
Q 006375 372 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC-NDPAFNSSRLSLLD-RGFIFAIAQIRGGGEL 449 (648)
Q Consensus 372 ~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~-~G~~v~~~~~rG~g~~ 449 (648)
..+..+.+++++.+| +|+++++.|++. +.|+||++|||.... ....+......|+. +||+|+.+|||++++.
T Consensus 59 ~~~~~~~~~~~~~~g-~i~~~~~~p~~~-----~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~ 132 (326)
T 3ga7_A 59 PSMTTRTCAVPTPYG-DVTTRLYSPQPT-----SQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQA 132 (326)
T ss_dssp CCCEEEEEEECCTTS-CEEEEEEESSSS-----CSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTS
T ss_pred CCcceEEEEeecCCC-CeEEEEEeCCCC-----CCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCC
Confidence 345568999999999 799998888653 239999999976332 23345555667777 6999999999988764
Q ss_pred ChhhhhcccccCCCCcHhHHHHHHHHHHHcC---CCCCCeEEEEeeChhHHHHHHHHhhCCCc------eeEEEecCCcc
Q 006375 450 GRQWYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMRPDL------FKAAVAAVPFV 520 (648)
Q Consensus 450 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~------~~a~v~~~~~~ 520 (648)
. ....++|+.++++|+.++. .+|++||+|+|+|+||++++.++.+.|+. ++++|+.+|+.
T Consensus 133 ~-----------~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~~ 201 (326)
T 3ga7_A 133 R-----------YPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLY 201 (326)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCCC
T ss_pred C-----------CCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEecccc
Confidence 3 2245689999999999863 47999999999999999999999887764 89999999988
Q ss_pred cccccccCCCCCCCcccccccCC---CCCHHHH-HHHHc--------CCccc-----cCCCCCCCeEEEeecCCCCccCC
Q 006375 521 DVLTTMLDPTIPLTTAEWEEWGD---PWKEEFY-FYMKS--------YSPVD-----NVKAQNYPHILVTAGLNDPRVMY 583 (648)
Q Consensus 521 d~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~-~~~~~--------~sp~~-----~~~~~~~P~~li~~g~~D~~v~~ 583 (648)
+...... ...++. .-..+.. .++.. .+|+. .+.+ ..||+||+||++|+.|
T Consensus 202 ~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~li~~G~~D~~~-- 268 (326)
T 3ga7_A 202 GLQDSVS----------RRLFGGAWDGLTREDLDMYEKAYLRNDEDRESPWYCLFNNDLTR-DVPPCFIASAEFDPLI-- 268 (326)
T ss_dssp SCSCCHH----------HHHCCCTTTTCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCSS-CCCCEEEEEETTCTTH--
T ss_pred ccCCChh----------HhhhcCCCCCCCHHHHHHHHHHhCCCCCccCCcccCCCcchhhc-CCCCEEEEecCcCcCH--
Confidence 7543210 000000 0011111 11111 12322 2222 3456999999999998
Q ss_pred chHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCc---hHHHHHHHHHHHHHHHHhcCC
Q 006375 584 SEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG---RFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 584 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~ 639 (648)
.++.+++++|+++++++++++++ +.+|+.... ..+..+...++.+||.++|+.
T Consensus 269 ~~~~~~~~~l~~~g~~~~~~~~~---g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l~~ 324 (326)
T 3ga7_A 269 DDSRLLHQTLQAHQQPCEYKMYP---GTLHAFLHYSRMMTIADDALQDGARFFMARMKT 324 (326)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEET---TCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCcEEEEEeC---CCccchhhhcCccHHHHHHHHHHHHHHHHHhcc
Confidence 48999999999999888777775 889965321 122233455788999999864
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=202.55 Aligned_cols=253 Identities=11% Similarity=0.076 Sum_probs=163.0
Q ss_pred CCcceEEEEEeCCCCeEEeEEEEE-eeCc-------------------cccCCCCcEEEEecCCCCCCCCCC---CchhH
Q 006375 372 NNYFTERKWASASDGTQIPICIVY-RKNL-------------------VKLDGSDPLLLYGYGSYEICNDPA---FNSSR 428 (648)
Q Consensus 372 ~~~~~~~~~~~s~~g~~i~~~l~~-~~~~-------------------~~~~~~~P~vl~~hGg~~~~~~~~---~~~~~ 428 (648)
..+..+.+.+.+.+| +.+.++. |+.. ...+++.|+||++|||........ |....
T Consensus 60 ~~v~~~dv~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~~~ 137 (365)
T 3ebl_A 60 EGVSSFDHIIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLC 137 (365)
T ss_dssp TTEEEEEEEEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHHHH
T ss_pred CCCceeeEEecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHHHH
Confidence 345678899998888 5556555 6541 013457899999999864433222 45556
Q ss_pred HHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcC----CCCCC-eEEEEeeChhHHHHHHH
Q 006375 429 LSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC----YCTKE-KLCIEGRSAGGLLIGAV 502 (648)
Q Consensus 429 ~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-~i~i~G~S~GG~l~~~~ 502 (648)
..|+.+ ||+|+.+|||++++... ...++|+.++++||.++. .+|++ ||+|+|+||||++++.+
T Consensus 138 ~~la~~~g~~Vv~~dyR~~p~~~~-----------~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~~ 206 (365)
T 3ebl_A 138 RRFVKLSKGVVVSVNYRRAPEHRY-----------PCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHHV 206 (365)
T ss_dssp HHHHHHHTSEEEEECCCCTTTSCT-----------THHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHHH
T ss_pred HHHHHHCCCEEEEeeCCCCCCCCC-----------cHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHHH
Confidence 778876 99999999998775432 245689999999999765 58999 99999999999999999
Q ss_pred HhhCCC---ceeEEEecCCcccccccccC----CCCCCCccc-----cccc-CCCCCHHHHHHHHcCCcc----ccCCCC
Q 006375 503 LNMRPD---LFKAAVAAVPFVDVLTTMLD----PTIPLTTAE-----WEEW-GDPWKEEFYFYMKSYSPV----DNVKAQ 565 (648)
Q Consensus 503 ~~~~p~---~~~a~v~~~~~~d~~~~~~~----~~~~~~~~~-----~~~~-g~~~~~~~~~~~~~~sp~----~~~~~~ 565 (648)
+.+.++ .++++|+.+|++|....... ...+..... |..+ +....... ...+|+ ..++.+
T Consensus 207 a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~l~~~ 282 (365)
T 3ebl_A 207 AVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDH----PACNPFGPNGRRLGGL 282 (365)
T ss_dssp HHHHHHTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTS----TTTCTTSTTCCCCTTS
T ss_pred HHHHHhcCCceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCC----cccCCCCCcchhhccC
Confidence 987665 79999999999875432100 000000000 0001 00000000 012233 234334
Q ss_pred CCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC--chHHHHHHHHHHHHHHHHhcCCCCCC
Q 006375 566 NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS--GRFERLREAAFTYTFLMRALSMLPSV 643 (648)
Q Consensus 566 ~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~l~~~~~~ 643 (648)
.+||+||+||++|..+ .++.+++++|+++++++++++++ +++|+... ...+..+....+.+||.++++...+.
T Consensus 283 ~~pP~Li~~G~~D~l~--~~~~~~~~~L~~~g~~v~l~~~~---g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~~~~~~ 357 (365)
T 3ebl_A 283 PFAKSLIIVSGLDLTC--DRQLAYADALREDGHHVKVVQCE---NATVGFYLLPNTVHYHEVMEEISDFLNANLYYGSHH 357 (365)
T ss_dssp CCCCEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEET---TCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC-----
T ss_pred CCCCEEEEEcCcccch--hHHHHHHHHHHHCCCCEEEEEEC---CCcEEEeccCCCHHHHHHHHHHHHHHHHhhhcccch
Confidence 5677999999999765 46789999999999888777775 88996531 12233334557899999999876655
Q ss_pred CCC
Q 006375 644 GSE 646 (648)
Q Consensus 644 ~~~ 646 (648)
-++
T Consensus 358 ~~~ 360 (365)
T 3ebl_A 358 HHH 360 (365)
T ss_dssp ---
T ss_pred hhc
Confidence 443
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=206.06 Aligned_cols=246 Identities=15% Similarity=0.129 Sum_probs=171.1
Q ss_pred CCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCC-CCCCCCchhHHHHHHCCCEEEEEccCCCCCCC
Q 006375 372 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG 450 (648)
Q Consensus 372 ~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g 450 (648)
..+..+.+.+++.+|.+|+++++.|++ .++.|+||++||+.+. ... + .....|+++||.|+++|+||.|+..
T Consensus 52 ~~~~~~~~~~~~~~g~~i~~~~~~P~~----~~~~p~vv~~HG~~~~~~~~--~-~~~~~l~~~g~~v~~~d~rg~g~s~ 124 (318)
T 1l7a_A 52 DGVKVYRLTYKSFGNARITGWYAVPDK----EGPHPAIVKYHGYNASYDGE--I-HEMVNWALHGYATFGMLVRGQQRSE 124 (318)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEESS----CSCEEEEEEECCTTCCSGGG--H-HHHHHHHHTTCEEEEECCTTTSSSC
T ss_pred CCeEEEEEEEEccCCCEEEEEEEeeCC----CCCccEEEEEcCCCCCCCCC--c-ccccchhhCCcEEEEecCCCCCCCC
Confidence 345678889998899999999888865 2568999999997654 321 2 2234788899999999999999876
Q ss_pred hhhhhcccccCC--------------CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEec
Q 006375 451 RQWYENGKFLKK--------------KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 516 (648)
Q Consensus 451 ~~~~~~~~~~~~--------------~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~ 516 (648)
..+...+....+ ...++|+.+++++|.++..+|+++|+++|+|+||.+++.++.++|+ ++++|+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~~ 203 (318)
T 1l7a_A 125 DTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVAD 203 (318)
T ss_dssp CCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEE
T ss_pred CcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEec
Confidence 553211111000 1347899999999999888899999999999999999999999886 7777888
Q ss_pred CCccccccccc--CCCCCCCcc-cc-cccCCC-CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHH
Q 006375 517 VPFVDVLTTML--DPTIPLTTA-EW-EEWGDP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVA 591 (648)
Q Consensus 517 ~~~~d~~~~~~--~~~~~~~~~-~~-~~~g~~-~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~ 591 (648)
+|+++...... ....++... .+ ..++.+ .....+..+..+++...+.++++| +|+++|++|..||+.++.++++
T Consensus 204 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~li~~g~~D~~~~~~~~~~~~~ 282 (318)
T 1l7a_A 204 YPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVP-VLMSIGLIDKVTPPSTVFAAYN 282 (318)
T ss_dssp SCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSC-EEEEEETTCSSSCHHHHHHHHH
T ss_pred CCcccCHHHHHhcCCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhhCCCC-EEEEeccCCCCCCcccHHHHHh
Confidence 88654322111 111111110 11 111112 122333445566777778888887 9999999999999999999988
Q ss_pred HHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 592 KLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 592 ~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
++.. +.++++++ ++||+.. .+ ....+.+||.++|+
T Consensus 283 ~l~~---~~~~~~~~---~~~H~~~---~~---~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 283 HLET---KKELKVYR---YFGHEYI---PA---FQTEKLAFFKQILK 317 (318)
T ss_dssp HCCS---SEEEEEET---TCCSSCC---HH---HHHHHHHHHHHHHC
T ss_pred hcCC---CeeEEEcc---CCCCCCc---ch---hHHHHHHHHHHHhC
Confidence 8764 24445554 8899731 22 23356899999886
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=201.82 Aligned_cols=234 Identities=12% Similarity=0.061 Sum_probs=160.0
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccc--------------cCCCCcEEEEecCCCCCCCCCC---CchhHHHHH-HC
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVK--------------LDGSDPLLLYGYGSYEICNDPA---FNSSRLSLL-DR 434 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~--------------~~~~~P~vl~~hGg~~~~~~~~---~~~~~~~l~-~~ 434 (648)
.+..+.+.+.+ +..+++.++.|++. . .+++.|+||++|||........ |......|+ ++
T Consensus 69 ~v~~~dv~~~~--~~~l~~~~~~P~~~-~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~ 145 (351)
T 2zsh_A 69 GVFSFDVLIDR--RINLLSRVYRPAYA-DQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLC 145 (351)
T ss_dssp TEEEEEEEEET--TTTEEEEEEEECCT-TCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHH
T ss_pred CceEEEEEecC--CCCeEEEEEecCCc-cccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHHHHHHHHHHc
Confidence 44567777765 44578888888763 2 2467899999999754333222 555667788 67
Q ss_pred CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcC----CCCCC-eEEEEeeChhHHHHHHHHhhCCC-
Q 006375 435 GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC----YCTKE-KLCIEGRSAGGLLIGAVLNMRPD- 508 (648)
Q Consensus 435 G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-~i~i~G~S~GG~l~~~~~~~~p~- 508 (648)
||+|+.+|+||+++... ...++|+.++++|+.++. .+|++ ||+++|+||||.+++.++.++|+
T Consensus 146 g~~vv~~d~rg~~~~~~-----------~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~ 214 (351)
T 2zsh_A 146 KCVVVSVNYRRAPENPY-----------PCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGES 214 (351)
T ss_dssp TSEEEEECCCCTTTSCT-----------THHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTT
T ss_pred CCEEEEecCCCCCCCCC-----------chhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhcc
Confidence 99999999999876432 245789999999999864 47899 99999999999999999999888
Q ss_pred --ceeEEEecCCcccccccccCCCCCCCcccccccCCCC-CHHHHH-HHHc------------CCcc----ccCCCCCCC
Q 006375 509 --LFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPW-KEEFYF-YMKS------------YSPV----DNVKAQNYP 568 (648)
Q Consensus 509 --~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~------------~sp~----~~~~~~~~P 568 (648)
.++++|+.+|+++..... .......+.+. ...... .+.. .+|+ .+++++++|
T Consensus 215 ~~~v~~~vl~~p~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~p 286 (351)
T 2zsh_A 215 GIDVLGNILLNPMFGGNERT--------ESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFP 286 (351)
T ss_dssp TCCCCEEEEESCCCCCSSCC--------HHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTSCCCTTCCCC
T ss_pred CCCeeEEEEECCccCCCcCC--------hhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCccchhhCCCC
Confidence 899999999988743211 00000011110 111000 0111 1222 345556776
Q ss_pred eEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC----chHHHHHHHHHHHHHHHH
Q 006375 569 HILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS----GRFERLREAAFTYTFLMR 635 (648)
Q Consensus 569 ~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~~fl~~ 635 (648)
|+||++|++|..++ ++.+++++|++.+.+.++++++ ++||+... ...+ +....+.+||.+
T Consensus 287 P~Lii~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~---g~gH~~~~~~~~~~~~--~~~~~i~~Fl~~ 350 (351)
T 2zsh_A 287 KSLVVVAGLDLIRD--WQLAYAEGLKKAGQEVKLMHLE---KATVGFYLLPNNNHFH--NVMDEISAFVNA 350 (351)
T ss_dssp EEEEEEETTSTTHH--HHHHHHHHHHHTTCCEEEEEET---TCCTTTTSSSCSHHHH--HHHHHHHHHHHC
T ss_pred CEEEEEcCCCcchH--HHHHHHHHHHHcCCCEEEEEEC---CCcEEEEecCCCHHHH--HHHHHHHHHhcC
Confidence 79999999999886 7889999999988777666665 88996643 2222 223356788864
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=215.92 Aligned_cols=255 Identities=15% Similarity=0.148 Sum_probs=176.6
Q ss_pred CCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCC----CC-CCCch-hH---HHHHHCCCEEEEEc
Q 006375 372 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC----ND-PAFNS-SR---LSLLDRGFIFAIAQ 442 (648)
Q Consensus 372 ~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~----~~-~~~~~-~~---~~l~~~G~~v~~~~ 442 (648)
..+..+.+.+++.||.+|.++++.|++. ++.|+||++||..+.. .. ..|.. .. +.|+++||+|+.+|
T Consensus 21 ~~~~~~~v~i~~~DG~~L~~~~~~P~~~----~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D 96 (615)
T 1mpx_A 21 NDYIKREVMIPMRDGVKLHTVIVLPKGA----KNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD 96 (615)
T ss_dssp CSEEEEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEEEeCCCC----CCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEEC
Confidence 4567788999999999999998888753 5689999999732211 11 11111 11 78999999999999
Q ss_pred cCCCCCCChhhhhccc-----ccCCCCcHhHHHHHHHHHHHc-CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEec
Q 006375 443 IRGGGELGRQWYENGK-----FLKKKNTFTDFIACAEYLIKN-CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 516 (648)
Q Consensus 443 ~rG~g~~g~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~ 516 (648)
+||+|+++..+..... ..+.....+|+.++++||.++ ++.| .||+++|+||||+++++++.++|+.++|+|+.
T Consensus 97 ~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~~ 175 (615)
T 1mpx_A 97 VRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVPE 175 (615)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred CCCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEec
Confidence 9999988876643311 112226789999999999998 7766 59999999999999999998889999999999
Q ss_pred CCcccccc-ccc-CCCC-CCC----------------------ccccc------------------------cc-CCCCC
Q 006375 517 VPFVDVLT-TML-DPTI-PLT----------------------TAEWE------------------------EW-GDPWK 546 (648)
Q Consensus 517 ~~~~d~~~-~~~-~~~~-~~~----------------------~~~~~------------------------~~-g~~~~ 546 (648)
+|+.|+.. ... .... .+. ...|. ++ ..+.
T Consensus 176 ~~~~d~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 254 (615)
T 1mpx_A 176 SPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAA- 254 (615)
T ss_dssp SCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCS-
T ss_pred CCccccccccccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCCC-
Confidence 99999543 110 0000 000 00000 00 0010
Q ss_pred HHHHHHHHcCCccccCCC--CCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCC---CCeEEEEecCCCCccCCC----
Q 006375 547 EEFYFYMKSYSPVDNVKA--QNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD---DNILLFKCELGAGHFSKS---- 617 (648)
Q Consensus 547 ~~~~~~~~~~sp~~~~~~--~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~gH~~~~---- 617 (648)
.-+++++.||..++++ +++| +|++||.+|.+ ++.++.+++++|++.+.+ .++++.+ . +|+...
T Consensus 255 --~d~~w~~~Sp~~~~~~~~I~~P-~Lii~G~~D~~-~~~~~~~~~~aL~~~g~p~~~~~lvigp---~-~H~~~~~~~~ 326 (615)
T 1mpx_A 255 --YDAFWQEQALDKVMARTPLKVP-TMWLQGLWDQE-DMWGAIHSYAAMEPRDKRNTLNYLVMGP---W-RHSQVNYDGS 326 (615)
T ss_dssp --SCHHHHTTCHHHHHHTSCCCSC-EEEEEETTCSS-CSSHHHHHHHHHGGGCTTSSSEEEEEES---C-CTTGGGSCCS
T ss_pred --cChhhhhcChhhhhhccCCCCC-EEEeecccCcc-ccccHHHHHHHHHhhcCCCcCCEEEECC---C-CCCCcccccc
Confidence 1134577899988888 9999 99999999998 889999999999998754 4444443 2 574311
Q ss_pred --------chHHHHHHHHHHHHHHHHhcCCC
Q 006375 618 --------GRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 618 --------~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
...........+++||.++|+..
T Consensus 327 ~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 357 (615)
T 1mpx_A 327 ALGALNFEGDTARQFRHDVLRPFFDQYLVDG 357 (615)
T ss_dssp EETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred ccCccccCcccchhhhhhHHHHHHHHHhcCC
Confidence 00111111335689999999764
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=202.94 Aligned_cols=216 Identities=18% Similarity=0.169 Sum_probs=165.2
Q ss_pred ceEEEEEeCC-CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCC--------ch--hHHHHHHCCCEEEEEcc
Q 006375 375 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF--------NS--SRLSLLDRGFIFAIAQI 443 (648)
Q Consensus 375 ~~~~~~~~s~-~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~--------~~--~~~~l~~~G~~v~~~~~ 443 (648)
..+.+.+.+. +|.+++++++.|++. ...++.|+||++||+.+....... .. ........|+.|+.+|+
T Consensus 143 ~~~~~~~~~~~dg~~l~~~v~~P~~~-~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~pd~ 221 (380)
T 3doh_A 143 DFLAFTFKDPETGVEIPYRLFVPKDV-NPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQC 221 (380)
T ss_dssp GEEEEEEECTTTCCEEEEEEECCSSC-CTTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEECC
T ss_pred cccceeeccCCCCcEEEEEEEcCCCC-CCCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEecC
Confidence 3567788888 999999999999875 456778999999997655332211 00 11233456899999999
Q ss_pred CCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccc
Q 006375 444 RGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVL 523 (648)
Q Consensus 444 rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~ 523 (648)
||.+++|..|...+........++|+.++++++.++..+|++||+++|+||||++++.++.++|++|+++|+.+|..+..
T Consensus 222 ~g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~~~~ 301 (380)
T 3doh_A 222 PPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVS 301 (380)
T ss_dssp CTTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGG
T ss_pred CCCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCCChh
Confidence 99999999888655544556678999999999998877999999999999999999999999999999999999875211
Q ss_pred ccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCC-CCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCe
Q 006375 524 TTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 602 (648)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~-~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~ 602 (648)
.+.++ ..| +|++||++|..||+.++++++++|++++.+.++
T Consensus 302 -------------------------------------~~~~~~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 343 (380)
T 3doh_A 302 -------------------------------------KVERIKDIP-IWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRY 343 (380)
T ss_dssp -------------------------------------GGGGGTTSC-EEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEE
T ss_pred -------------------------------------hhhhccCCC-EEEEecCCCCccCHHHHHHHHHHHHHCCCceEE
Confidence 11122 255 999999999999999999999999999988777
Q ss_pred EEEEecCCC--------CccCCCchHHHHHHHHHHHHHHHHh
Q 006375 603 LLFKCELGA--------GHFSKSGRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 603 ~~~~~~~~~--------gH~~~~~~~~~~~~~~~~~~fl~~~ 636 (648)
++++ ++ +|.. ....+. ...+++||.++
T Consensus 344 ~~~~---~~~h~~h~~~~H~~---~~~~~~-~~~i~~wL~~~ 378 (380)
T 3doh_A 344 TEYE---KGFMEKHGWDPHGS---WIPTYE-NQEAIEWLFEQ 378 (380)
T ss_dssp EEEC---TTHHHHTTCCTTCT---HHHHHT-CHHHHHHHHTC
T ss_pred EEec---CCcccCCCCCCchh---HHHhcC-CHHHHHHHHhh
Confidence 7776 66 4531 122122 12567898765
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-22 Score=204.46 Aligned_cols=243 Identities=17% Similarity=0.236 Sum_probs=170.6
Q ss_pred CCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCCh
Q 006375 372 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 372 ~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 451 (648)
..+..+++.+.+.+|.+|+++++.|++. ++.|+||++||+.+.... |.. ...++++||.|+++|+||.|+.+.
T Consensus 78 ~~~~~~~~~~~~~~g~~l~~~~~~P~~~----~~~p~vv~~HG~g~~~~~--~~~-~~~~~~~G~~v~~~D~rG~g~s~~ 150 (346)
T 3fcy_A 78 SFAECYDLYFTGVRGARIHAKYIKPKTE----GKHPALIRFHGYSSNSGD--WND-KLNYVAAGFTVVAMDVRGQGGQSQ 150 (346)
T ss_dssp TTEEEEEEEEECGGGCEEEEEEEEESCS----SCEEEEEEECCTTCCSCC--SGG-GHHHHTTTCEEEEECCTTSSSSCC
T ss_pred CceEEEEEEEEcCCCCEEEEEEEecCCC----CCcCEEEEECCCCCCCCC--hhh-hhHHHhCCcEEEEEcCCCCCCCCC
Confidence 4567789999999999999998888753 568999999998766543 333 336778999999999999997755
Q ss_pred hhhhccc------cc-----CC-----CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEe
Q 006375 452 QWYENGK------FL-----KK-----KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 515 (648)
Q Consensus 452 ~~~~~~~------~~-----~~-----~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~ 515 (648)
....... .. .. ...++|+.++++++.....+|+++|+++|+|+||.+++.++.++|+ ++++|+
T Consensus 151 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~vl 229 (346)
T 3fcy_A 151 DVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVVS 229 (346)
T ss_dssp CCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEEE
T ss_pred CCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEEE
Confidence 4321100 00 00 0236899999999999888899999999999999999999999998 999999
Q ss_pred cCCcccccccccCCCCCCC-cc---cccccCCC---CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHH
Q 006375 516 AVPFVDVLTTMLDPTIPLT-TA---EWEEWGDP---WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAK 588 (648)
Q Consensus 516 ~~~~~d~~~~~~~~~~~~~-~~---~~~~~g~~---~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~ 588 (648)
.+|+++-............ .. .+..+..| .....+..+..+++...+.++++| +|+++|++|..||+.++.+
T Consensus 230 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P-~lii~G~~D~~~~~~~~~~ 308 (346)
T 3fcy_A 230 EYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGD-VLMCVGLMDQVCPPSTVFA 308 (346)
T ss_dssp ESCSSCCHHHHHHTTCCCGGGHHHHHHHHHHCTTCTTHHHHHHHHGGGCHHHHGGGCCSE-EEEEEETTCSSSCHHHHHH
T ss_pred CCCcccCHHHHhhccccccchHHHHHHHHhcCCCcchHHHHHHHhCcccHHHHHHhcCCC-EEEEeeCCCCcCCHHHHHH
Confidence 9997653322211110000 00 11111122 233444555666777777888887 9999999999999988888
Q ss_pred HHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 589 FVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 589 ~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
+++++.. +.++++++ ++||.... + . ...+.+||.+
T Consensus 309 ~~~~~~~---~~~~~~~~---~~gH~~~~---~-~--~~~i~~fl~~ 343 (346)
T 3fcy_A 309 AYNNIQS---KKDIKVYP---DYGHEPMR---G-F--GDLAMQFMLE 343 (346)
T ss_dssp HHTTCCS---SEEEEEET---TCCSSCCT---T-H--HHHHHHHHHT
T ss_pred HHHhcCC---CcEEEEeC---CCCCcCHH---H-H--HHHHHHHHHH
Confidence 8877653 44555554 88997751 1 1 2245788865
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-22 Score=200.15 Aligned_cols=213 Identities=13% Similarity=0.087 Sum_probs=155.3
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCcc--ccCCCCcEEEEecCCCCCC-CCCCCchhHHHHHHCCCEEEEEccCCCCCCCh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLV--KLDGSDPLLLYGYGSYEIC-NDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~--~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 451 (648)
..+.+.+.+.+|..+.+.++ |+... ..+++.|+||++|||.... ....|...+..|+++||.|+++|+||.++.+.
T Consensus 18 ~~~~v~~~~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~~~~~~ 96 (283)
T 3bjr_A 18 QGMQVIKQKLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYTLLTDQQP 96 (283)
T ss_dssp CSSEEEEEECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCCHHHHHHHHHHHHTTTCEEEEEECCCTTTCSS
T ss_pred CCcceEEeecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCCccccHHHHHHHHhCCcEEEEEeccCCCcccc
Confidence 45677888888888888877 76410 1346789999999965322 22335555678888999999999999876531
Q ss_pred hhhhcccccCCCCcHhHHHHHHHHHHHcC---CCCCCeEEEEeeChhHHHHHHHHhhCCCc-------------eeEEEe
Q 006375 452 QWYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMRPDL-------------FKAAVA 515 (648)
Q Consensus 452 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~-------------~~a~v~ 515 (648)
.....++|+.++++|+.+.. .+|+++|+++|+||||.+++.++.++|+. ++++|+
T Consensus 97 ---------~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~v~ 167 (283)
T 3bjr_A 97 ---------LGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVL 167 (283)
T ss_dssp ---------CBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCSSEEE
T ss_pred ---------CchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCccEEEE
Confidence 11234679999999998763 36788999999999999999999999987 899999
Q ss_pred cCCcccccccccCCCCCCCccccccc-CCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHH
Q 006375 516 AVPFVDVLTTMLDPTIPLTTAEWEEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLR 594 (648)
Q Consensus 516 ~~~~~d~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~ 594 (648)
.+|+.++...+.. . ...+..+ + .+..++|...+.++.+| +|++||++|..||+.++.+++++++
T Consensus 168 ~~p~~~~~~~~~~-~----~~~~~~~~~---------~~~~~~~~~~~~~~~~P-~lii~G~~D~~~p~~~~~~~~~~l~ 232 (283)
T 3bjr_A 168 GYPVISPLLGFPK-D----DATLATWTP---------TPNELAADQHVNSDNQP-TFIWTTADDPIVPATNTLAYATALA 232 (283)
T ss_dssp ESCCCCTTSBC-------------CCCC---------CGGGGCGGGSCCTTCCC-EEEEEESCCTTSCTHHHHHHHHHHH
T ss_pred cCCcccccccccc-c----cchHHHHHH---------HhHhcCHHHhccCCCCC-EEEEEcCCCCCCChHHHHHHHHHHH
Confidence 9998874332110 0 0001111 1 12345777777777887 9999999999999999999999999
Q ss_pred hcCCCCCeEEEEecCCCCccC
Q 006375 595 EMKTDDNILLFKCELGAGHFS 615 (648)
Q Consensus 595 ~~~~~~~~~~~~~~~~~gH~~ 615 (648)
..+.+.++++++ ++||..
T Consensus 233 ~~g~~~~~~~~~---~~~H~~ 250 (283)
T 3bjr_A 233 TAKIPYELHVFK---HGPHGL 250 (283)
T ss_dssp HTTCCEEEEEEC---CCSHHH
T ss_pred HCCCCeEEEEeC---CCCccc
Confidence 988887777775 889954
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=215.59 Aligned_cols=253 Identities=17% Similarity=0.183 Sum_probs=177.4
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCC--CCCCc--------hhH-HHHHHCCCEEEEE
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN--DPAFN--------SSR-LSLLDRGFIFAIA 441 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~--~~~~~--------~~~-~~l~~~G~~v~~~ 441 (648)
.+..+.+.+++.||.+|.++++.|++. ++.|+||+.|| ++... ...+. ... +.|+++||+|+.+
T Consensus 34 ~~~~~~v~i~~~DG~~L~~~l~~P~~~----~~~PvIl~~hp-yg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~ 108 (652)
T 2b9v_A 34 DYIKREVMVPMRDGVKLYTVIVIPKNA----RNAPILLTRTP-YNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQ 108 (652)
T ss_dssp SEEEEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEES-SCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEE
T ss_pred CcEEEEEEEECCCCcEEEEEEEecCCC----CCccEEEEECC-CCCCcccccccccccccccccchHHHHHhCCCEEEEE
Confidence 456788899999999999998888753 56899999986 33210 00111 113 7899999999999
Q ss_pred ccCCCCCCChhhhhccc-----ccCCCCcHhHHHHHHHHHHHc-CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEe
Q 006375 442 QIRGGGELGRQWYENGK-----FLKKKNTFTDFIACAEYLIKN-CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 515 (648)
Q Consensus 442 ~~rG~g~~g~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~ 515 (648)
|+||+|+++..|..... ..++...++|+.++++||.++ +++| .||+++|+||||++++.++.++|+.++|+|+
T Consensus 109 D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~ 187 (652)
T 2b9v_A 109 DIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAP 187 (652)
T ss_dssp ECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEE
T ss_pred ecCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEe
Confidence 99999998887754321 111236789999999999998 8877 5999999999999999999988999999999
Q ss_pred cCCcccccc-c-ccCCCC-CCC----------------------ccccc------------------------cc-CCCC
Q 006375 516 AVPFVDVLT-T-MLDPTI-PLT----------------------TAEWE------------------------EW-GDPW 545 (648)
Q Consensus 516 ~~~~~d~~~-~-~~~~~~-~~~----------------------~~~~~------------------------~~-g~~~ 545 (648)
.+|+.|+.. . +..... .+. ...|. ++ +.|.
T Consensus 188 ~~~~~d~~~~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 267 (652)
T 2b9v_A 188 ESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPA 267 (652)
T ss_dssp EEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCS
T ss_pred cccccccccccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCCC
Confidence 999999753 1 100000 000 00000 00 1111
Q ss_pred CHHHHHHHHcCCccccCCC--CCCCeEEEeecCCCCccCCchHHHHHHHHHhcC--CCCCeEEEEecCCCCccCCC----
Q 006375 546 KEEFYFYMKSYSPVDNVKA--QNYPHILVTAGLNDPRVMYSEPAKFVAKLREMK--TDDNILLFKCELGAGHFSKS---- 617 (648)
Q Consensus 546 ~~~~~~~~~~~sp~~~~~~--~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~gH~~~~---- 617 (648)
.-+++++.||..++.+ +++| +|++||.+|.+ +..++.+++++|++.+ ++.++++.+ .+|+...
T Consensus 268 ---~d~yw~~~Sp~~~~~~~~I~~P-vLiv~G~~D~~-~~~~~~~~~~aL~~~g~~~~~~lvigp----~~H~~~~~~~~ 338 (652)
T 2b9v_A 268 ---YDAFWQGQALDKILAQRKPTVP-MLWEQGLWDQE-DMWGAIHAWQALKDADVKAPNTLVMGP----WRHSGVNYNGS 338 (652)
T ss_dssp ---SSHHHHTTCHHHHHHHHCCCSC-EEEEEETTCSS-CSSHHHHHHHHHHHTTCSSCEEEEEES----CCTTGGGSCCS
T ss_pred ---CChHHhcCChhhhhhcCCCCCC-EEEEeecCCcc-ccccHHHHHHHHHhcCCCCCCEEEECC----CCCCCcccccc
Confidence 0134567789888888 9999 99999999998 7789999999999987 666655543 3575311
Q ss_pred --------chHHHHHHHHHHHHHHHHhcCCC
Q 006375 618 --------GRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 618 --------~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
...........+++||.++|+..
T Consensus 339 ~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 369 (652)
T 2b9v_A 339 TLGPLEFEGDTAHQYRRDVFRPFFDEYLKPG 369 (652)
T ss_dssp EETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred cCCccccccccchhhhhhHHHHHHHHHhCCC
Confidence 00011111335689999999764
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=195.60 Aligned_cols=235 Identities=18% Similarity=0.162 Sum_probs=165.5
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCC-CCCCCCCchhHHHHHH-CCCEEEEEccCCCCCCC
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE-ICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGELG 450 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~g~~g 450 (648)
.+..+.+.+++.+|.+|+++++.|++ ++.|+||++|||.. ......+......|+. .|++|+.+|||++++..
T Consensus 57 ~~~~~~~~i~~~~G~~i~~~~~~P~~-----~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~ 131 (317)
T 3qh4_A 57 GVAVADDVVTGEAGRPVPVRIYRAAP-----TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEHP 131 (317)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEECSC-----SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC
T ss_pred cceEEEEEecCCCCCeEEEEEEecCC-----CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCCCCC
Confidence 45678899999999899999888754 46799999999653 2333446666677775 49999999999887643
Q ss_pred hhhhhcccccCCCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhCCC----ceeEEEecCCccccc
Q 006375 451 RQWYENGKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVDVL 523 (648)
Q Consensus 451 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~~~a~v~~~~~~d~~ 523 (648)
. ...++|+.++++|+.++ ..+|++||+|+|+|+||++++.++.+.++ .++++++.+|++|..
T Consensus 132 ~-----------p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~ 200 (317)
T 3qh4_A 132 Y-----------PAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDDR 200 (317)
T ss_dssp T-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCCCCSS
T ss_pred C-----------chHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECceecCC
Confidence 2 24568999999999986 34789999999999999999999887554 489999999998864
Q ss_pred ccccCCCCCCCcccccccC-CC-CCHHH----HHHHH-------cCCccccCCCCCCCeEEEeecCCCCccCCchHHHHH
Q 006375 524 TTMLDPTIPLTTAEWEEWG-DP-WKEEF----YFYMK-------SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFV 590 (648)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~g-~~-~~~~~----~~~~~-------~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~ 590 (648)
... .+.++. .+ ..... +..+. ..+|.....-...||+||+||++|..++ ++.+++
T Consensus 201 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~lpP~li~~G~~D~~~~--~~~~~a 268 (317)
T 3qh4_A 201 PTA----------SRSEFRATPAFDGEAASLMWRHYLAGQTPSPESVPGRRGQLAGLPATLITCGEIDPFRD--EVLDYA 268 (317)
T ss_dssp CCH----------HHHHTTTCSSSCHHHHHHHHHHHHTTCCCCTTTCGGGCSCCTTCCCEEEEEEEESTTHH--HHHHHH
T ss_pred CCc----------CHHHhcCCCCcCHHHHHHHHHHhcCCCCCCcccCCCcccccCCCCceeEEecCcCCCch--hHHHHH
Confidence 110 001110 00 11111 11111 1234332222255679999999999876 889999
Q ss_pred HHHHhcCCCCCeEEEEecCCCCccCC---CchHHHHHHHHHHHHHHHHhcC
Q 006375 591 AKLREMKTDDNILLFKCELGAGHFSK---SGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 591 ~~l~~~~~~~~~~~~~~~~~~gH~~~---~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
++|++++.++++++++ +.+|++. .......+....+.+||.++|+
T Consensus 269 ~~l~~~g~~~~l~~~~---g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 269 QRLLGAGVSTELHIFP---RACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp HHHHHTTCCEEEEEEE---EEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCEEEEEeC---CCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 9999999998888887 7789632 1112223334567899999986
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=199.92 Aligned_cols=229 Identities=12% Similarity=0.097 Sum_probs=156.8
Q ss_pred EEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHh
Q 006375 388 QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFT 467 (648)
Q Consensus 388 ~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~ 467 (648)
.+.++++.|++. ++.|+||++||+.+.. +...+..|+++||.|+++|+||.++....+. ...++
T Consensus 144 ~l~~~l~~P~~~----~~~P~Vv~~hG~~~~~----~~~~a~~La~~Gy~V~a~D~rG~g~~~~~~~--------~~~~~ 207 (422)
T 3k2i_A 144 RVRATLFLPPGP----GPFPGIIDIFGIGGGL----LEYRASLLAGHGFATLALAYYNFEDLPNNMD--------NISLE 207 (422)
T ss_dssp TEEEEEEECSSS----CCBCEEEEECCTTCSC----CCHHHHHHHTTTCEEEEEECSSSTTSCSSCS--------CEETH
T ss_pred cEEEEEEcCCCC----CCcCEEEEEcCCCcch----hHHHHHHHHhCCCEEEEEccCCCCCCCCCcc--------cCCHH
Confidence 589998888753 5689999999975542 3444778889999999999999876544322 24579
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc---C---CCCCCCccc----
Q 006375 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML---D---PTIPLTTAE---- 537 (648)
Q Consensus 468 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~---~---~~~~~~~~~---- 537 (648)
|+.++++||.++..+|+++|+++|+||||.+++.++.++|+ ++++|+.+|......... . +..+.....
T Consensus 208 d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (422)
T 3k2i_A 208 YFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVA 286 (422)
T ss_dssp HHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECCCCBCGGGCEEC
T ss_pred HHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCCcccchhhcccC
Confidence 99999999999888899999999999999999999999998 999999888764321100 0 000000000
Q ss_pred ------c-cccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchH-HHHHHHHHhcCCC-CCeEEEEec
Q 006375 538 ------W-EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEP-AKFVAKLREMKTD-DNILLFKCE 608 (648)
Q Consensus 538 ------~-~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~-~~~~~~l~~~~~~-~~~~~~~~~ 608 (648)
+ ..+.++... ...+....+.++++| +|++||++|..||..+. ..+.++|++.+.+ .++++++
T Consensus 287 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~P-~Lii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~~-- 357 (422)
T 3k2i_A 287 FSGLVDIVDIRNALVGG------YKNPSMIPIEKAQGP-ILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYP-- 357 (422)
T ss_dssp TTSCEECTTCBCCCTTG------GGSTTBCCGGGCCSC-EEEEEETTCSSSCHHHHHHHHHHHHHHTTCCCCEEEEET--
T ss_pred cchhHHHHHHHhhhhhc------ccccccccHHHCCCC-EEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEC--
Confidence 0 011111111 112233345666888 99999999999998866 6888999998887 7777776
Q ss_pred CCCCccCCC--------------------------chHHHHHHHHHHHHHHHHhcCCCCCC
Q 006375 609 LGAGHFSKS--------------------------GRFERLREAAFTYTFLMRALSMLPSV 643 (648)
Q Consensus 609 ~~~gH~~~~--------------------------~~~~~~~~~~~~~~fl~~~l~~~~~~ 643 (648)
++||.... ......+....+.+||.++|+.....
T Consensus 358 -gagH~~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~~~~~~ 417 (422)
T 3k2i_A 358 -GTGHYIEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLGGTQKT 417 (422)
T ss_dssp -TCCSCCCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred -CCCCEECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 88997521 11222233446789999999865433
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=183.19 Aligned_cols=209 Identities=15% Similarity=0.115 Sum_probs=155.0
Q ss_pred EEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCC---CCCchhHHHHHHCCCEEEEEccCCCCCCChhhh
Q 006375 378 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND---PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 454 (648)
Q Consensus 378 ~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~---~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 454 (648)
++.+++.+| +|.++++.|++ ++.|+||++||..+.... ..+......|+++||.|+++|+||.|.....+.
T Consensus 25 ~~~~~~~~g-~l~~~~~~p~~-----~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~s~~~~~ 98 (249)
T 2i3d_A 25 EVIFNGPAG-RLEGRYQPSKE-----KSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGEFD 98 (249)
T ss_dssp EEEEEETTE-EEEEEEECCSS-----TTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSCCC
T ss_pred EEEEECCCc-eEEEEEEcCCC-----CCCCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
Confidence 888999888 79998665543 457999999995432221 223455678889999999999999876543321
Q ss_pred hcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCC
Q 006375 455 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLT 534 (648)
Q Consensus 455 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~ 534 (648)
.....++|+.++++++..++ .++++++++|+|+||.+++.++.++|+ ++++|+.+|..+...
T Consensus 99 ------~~~~~~~d~~~~i~~l~~~~-~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~---------- 160 (249)
T 2i3d_A 99 ------HGAGELSDAASALDWVQSLH-PDSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD---------- 160 (249)
T ss_dssp ------SSHHHHHHHHHHHHHHHHHC-TTCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC----------
T ss_pred ------CccchHHHHHHHHHHHHHhC-CCCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh----------
Confidence 11234589999999999875 477899999999999999999999998 999999998765321
Q ss_pred cccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHh-cCCCCCeEEEEecCCCCc
Q 006375 535 TAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLRE-MKTDDNILLFKCELGAGH 613 (648)
Q Consensus 535 ~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~gH 613 (648)
...+.++++| +|+++|++|..||+.++.++++++.. .+...++++++ +++|
T Consensus 161 ------------------------~~~~~~~~~P-~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~H 212 (249)
T 2i3d_A 161 ------------------------FSFLAPCPSS-GLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLP---GANH 212 (249)
T ss_dssp ------------------------CTTCTTCCSC-EEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEET---TCCT
T ss_pred ------------------------hhhhcccCCC-EEEEEcCCCCCCCHHHHHHHHHHHhhccCCceeEEEEC---CCCc
Confidence 1123345677 99999999999999999999999985 33355555554 8899
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhcCCCC
Q 006375 614 FSKSGRFERLREAAFTYTFLMRALSMLP 641 (648)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 641 (648)
.... ..+.+ ...+.+||.+++....
T Consensus 213 ~~~~-~~~~~--~~~i~~fl~~~l~~~~ 237 (249)
T 2i3d_A 213 FFNG-KVDEL--MGECEDYLDRRLNGEL 237 (249)
T ss_dssp TCTT-CHHHH--HHHHHHHHHHHHTTCS
T ss_pred cccc-CHHHH--HHHHHHHHHHhcCCCC
Confidence 7653 23222 2356899999997543
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=196.77 Aligned_cols=232 Identities=17% Similarity=0.131 Sum_probs=152.9
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCC-CCCchhHHHHHH-CCCEEEEEccCCCCCCChhhhhcccccCCCCcH
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF 466 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~-~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~ 466 (648)
|+++++.|++. ++.|+||++|||...... ..+......|+. .||+|+.+|||++++... ...+
T Consensus 67 i~~~~~~p~~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~~-----------~~~~ 131 (322)
T 3fak_A 67 CAAEWVRAPGC----QAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHPF-----------PAAV 131 (322)
T ss_dssp EEEEEEECTTC----CTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTSCT-----------THHH
T ss_pred eEEEEEeCCCC----CCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCC-----------CcHH
Confidence 88888888653 568999999997643332 223444556666 599999999998876431 2356
Q ss_pred hHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCc----eeEEEecCCccccccccc-----CCCCCCCc-c
Q 006375 467 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL----FKAAVAAVPFVDVLTTML-----DPTIPLTT-A 536 (648)
Q Consensus 467 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----~~a~v~~~~~~d~~~~~~-----~~~~~~~~-~ 536 (648)
+|+.++++|+.++ .+|++||+|+|+|+||++++.++.+.++. ++++|+.+|++|+..... ....++.. .
T Consensus 132 ~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
T 3fak_A 132 EDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKTRAEADPMVAPG 210 (322)
T ss_dssp HHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTHHHHTTTTCCSCCSS
T ss_pred HHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcCHHHhCccCcccCHH
Confidence 8999999999988 57999999999999999999998876653 999999999998643210 00000000 0
Q ss_pred cc----ccc-CCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCC
Q 006375 537 EW----EEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 611 (648)
Q Consensus 537 ~~----~~~-g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 611 (648)
.+ ..| +... .. ....+|+... ....||+||+||++|..+ .++.+++++|+++++++++++++ +.
T Consensus 211 ~~~~~~~~~~~~~~-~~----~~~~sp~~~~-~~~~pP~li~~g~~D~~~--~~~~~~~~~l~~~g~~~~~~~~~---g~ 279 (322)
T 3fak_A 211 GINKMAARYLNGAD-AK----HPYASPNFAN-LKGLPPLLIHVGRDEVLL--DDSIKLDAKAKADGVKSTLEIWD---DM 279 (322)
T ss_dssp HHHHHHHHHHTTSC-TT----CTTTCGGGSC-CTTCCCEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEET---TC
T ss_pred HHHHHHHHhcCCCC-CC----CcccCCCccc-ccCCChHhEEEcCcCccH--HHHHHHHHHHHHcCCCEEEEEeC---Cc
Confidence 00 001 1100 00 0123565322 224567999999999874 58999999999999988777775 88
Q ss_pred CccCCC--c-hHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 006375 612 GHFSKS--G-RFERLREAAFTYTFLMRALSMLPSVGSEQ 647 (648)
Q Consensus 612 gH~~~~--~-~~~~~~~~~~~~~fl~~~l~~~~~~~~~~ 647 (648)
+|+... . ..+..+....+.+||.++|+......+|+
T Consensus 280 ~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~~~~~~~~ 318 (322)
T 3fak_A 280 IHVWHAFHPMLPEGKQAIVRVGEFMREQWAALAAALEHH 318 (322)
T ss_dssp CTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC--------
T ss_pred eeehhhccCCCHHHHHHHHHHHHHHHHHHhcchhhhhhh
Confidence 996532 1 12223334567899999998765555443
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=189.66 Aligned_cols=239 Identities=13% Similarity=0.072 Sum_probs=164.1
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCC-CCCCCCchhHHHHHHC-CCEEEEEccCCCCCCC
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELG 450 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g 450 (648)
....+.+.+++.+| +++++++.|++. .++.|+||++|||... .....|......|+++ ||.|+.+|+||.++..
T Consensus 45 ~~~~~~~~i~~~~g-~l~~~~~~P~~~---~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~~~~~ 120 (310)
T 2hm7_A 45 VAEVREFDMDLPGR-TLKVRMYRPEGV---EPPYPALVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHK 120 (310)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEECTTC---CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC
T ss_pred cceEEEEEeccCCC-eEEEEEEecCCC---CCCCCEEEEECCCccccCChhHhHHHHHHHHHhcCCEEEEeCCCCCCCCC
Confidence 45678888888888 899998888752 3567999999996533 2334466667788876 9999999999988753
Q ss_pred hhhhhcccccCCCCcHhHHHHHHHHHHHcC---CCCCCeEEEEeeChhHHHHHHHHhhCCC----ceeEEEecCCccccc
Q 006375 451 RQWYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVDVL 523 (648)
Q Consensus 451 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~~~a~v~~~~~~d~~ 523 (648)
. ...++|+.++++|+.++. .+|+++|+++|+||||.+++.++.++|+ .++++|+.+|.+|..
T Consensus 121 ~-----------~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~~~~~ 189 (310)
T 2hm7_A 121 F-----------PAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYD 189 (310)
T ss_dssp T-----------THHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCCCCCC
T ss_pred C-----------CccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcCCC
Confidence 2 134689999999999874 3678999999999999999999988775 699999999988764
Q ss_pred ccccCCCCCCCcccccccC-CC-CCHHHHHH-H------------HcCCccccCCCCCCCeEEEeecCCCCccCCchHHH
Q 006375 524 TTMLDPTIPLTTAEWEEWG-DP-WKEEFYFY-M------------KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAK 588 (648)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~g-~~-~~~~~~~~-~------------~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~ 588 (648)
... . ...+..+. .+ .......+ + ...+|.....-...||+||+||++|..+ .++.+
T Consensus 190 ~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~P~lii~G~~D~~~--~~~~~ 260 (310)
T 2hm7_A 190 PAH---P----PASIEENAEGYLLTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLR--DVGKL 260 (310)
T ss_dssp TTS---C----CHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTTH--HHHHH
T ss_pred ccc---C----CcchhhcCCCCCCCHHHHHHHHHHhCCCCCccCCccCCCCcCccccCCCCEEEEEecCCCch--HHHHH
Confidence 110 0 00000000 00 01111000 0 1234443222123456999999999987 58899
Q ss_pred HHHHHHhcCCCCCeEEEEecCCCCccCCC--c-hHHHHHHHHHHHHHHHHhcC
Q 006375 589 FVAKLREMKTDDNILLFKCELGAGHFSKS--G-RFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 589 ~~~~l~~~~~~~~~~~~~~~~~~gH~~~~--~-~~~~~~~~~~~~~fl~~~l~ 638 (648)
++++|++++.+.++++++ +++|.... . ..+.-+....+.+||.++|+
T Consensus 261 ~~~~l~~~g~~~~~~~~~---g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 310 (310)
T 2hm7_A 261 YAEALNKAGVKVEIENFE---DLIHGFAQFYSLSPGATKALVRIAEKLRDALA 310 (310)
T ss_dssp HHHHHHHTTCCEEEEEEE---EEETTGGGGTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCEEEEEeC---CCccchhhhcccChHHHHHHHHHHHHHHHHhC
Confidence 999999999888888887 77895432 1 11112233467899998874
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-20 Score=187.65 Aligned_cols=241 Identities=16% Similarity=0.085 Sum_probs=163.7
Q ss_pred CCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCC-CCCCCCCchhHHHHHHC-CCEEEEEccCCCCCC
Q 006375 372 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE-ICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGEL 449 (648)
Q Consensus 372 ~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~ 449 (648)
.....+.+.+++.+| +|+++++.|++. ++.|+||++|||.. ......|......|+++ ||.|+++|+||.++.
T Consensus 61 ~~~~~~~~~i~~~~~-~i~~~iy~P~~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~La~~~g~~Vv~~Dyrg~~~~ 135 (323)
T 3ain_A 61 EVGKIEDITIPGSET-NIKARVYYPKTQ----GPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPEN 135 (323)
T ss_dssp CCSEEEEEEEECSSS-EEEEEEEECSSC----SCCCEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS
T ss_pred CccEEEEEEecCCCC-eEEEEEEecCCC----CCCcEEEEECCCccccCChHHHHHHHHHHHHhcCCEEEEecCCCCCCC
Confidence 455678899998888 799998888652 56799999999753 23334566667778764 999999999998875
Q ss_pred ChhhhhcccccCCCCcHhHHHHHHHHHHHcCC-C-CCCeEEEEeeChhHHHHHHHHhhCCCce---eEEEecCCcccccc
Q 006375 450 GRQWYENGKFLKKKNTFTDFIACAEYLIKNCY-C-TKEKLCIEGRSAGGLLIGAVLNMRPDLF---KAAVAAVPFVDVLT 524 (648)
Q Consensus 450 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~-~-d~~~i~i~G~S~GG~l~~~~~~~~p~~~---~a~v~~~~~~d~~~ 524 (648)
.. ...++|+.++++|+.++.. . |+++|+++|+||||.+++.++.++|+.. +++|+.+|++|...
T Consensus 136 ~~-----------p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~~~ 204 (323)
T 3ain_A 136 KF-----------PAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSFDL 204 (323)
T ss_dssp CT-----------THHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSCCS
T ss_pred CC-----------cchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccCCC
Confidence 32 2356899999999987631 1 7899999999999999999998887765 89999999887532
Q ss_pred ccc-----CCCCCCCccc----cccc-CCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHH
Q 006375 525 TML-----DPTIPLTTAE----WEEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLR 594 (648)
Q Consensus 525 ~~~-----~~~~~~~~~~----~~~~-g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~ 594 (648)
... .....+.... +..| +.+.+.. -...+|+.. .-...||+||++|++|+.+ .++.+++++|+
T Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~sp~~~-~l~~l~P~lii~G~~D~l~--~~~~~~a~~l~ 277 (323)
T 3ain_A 205 ITKSLYDNGEGFFLTREHIDWFGQQYLRSFADLL----DFRFSPILA-DLNDLPPALIITAEHDPLR--DQGEAYANKLL 277 (323)
T ss_dssp CCHHHHHHSSSSSSCHHHHHHHHHHHCSSGGGGG----CTTTCGGGS-CCTTCCCEEEEEETTCTTH--HHHHHHHHHHH
T ss_pred CCccHHHhccCCCCCHHHHHHHHHHhCCCCcccC----CcccCcccC-cccCCCHHHEEECCCCccH--HHHHHHHHHHH
Confidence 100 0000000000 0011 1100000 012355543 2224456999999999987 48899999999
Q ss_pred hcCCCCCeEEEEecCCCCccCCCch---HHHHHHHHHHHHHHHHhcC
Q 006375 595 EMKTDDNILLFKCELGAGHFSKSGR---FERLREAAFTYTFLMRALS 638 (648)
Q Consensus 595 ~~~~~~~~~~~~~~~~~gH~~~~~~---~~~~~~~~~~~~fl~~~l~ 638 (648)
+++.++++++++ +++|+..... ....+....+.+||.++|+
T Consensus 278 ~ag~~~~~~~~~---g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 321 (323)
T 3ain_A 278 QSGVQVTSVGFN---NVIHGFVSFFPFIEQGRDAIGLIGYVLRKVFY 321 (323)
T ss_dssp HTTCCEEEEEET---TCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEEEC---CCccccccccCcCHHHHHHHHHHHHHHHHHhc
Confidence 999887777775 8899754311 1222234467899998875
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=189.42 Aligned_cols=247 Identities=19% Similarity=0.204 Sum_probs=165.2
Q ss_pred CCcceEEEEEeCCCCe-EEeEEEEEeeCccccCCCCcEEEEecCCCCCC-CCCCCchhHHHHHH-CCCEEEEEccCCCCC
Q 006375 372 NNYFTERKWASASDGT-QIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC-NDPAFNSSRLSLLD-RGFIFAIAQIRGGGE 448 (648)
Q Consensus 372 ~~~~~~~~~~~s~~g~-~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~-~G~~v~~~~~rG~g~ 448 (648)
..+..+.+.+++.+|. +|+++++.|++. .++.|+||++|||.... ....+......|++ .||.|+.+|+||.|+
T Consensus 47 ~~~~~~~~~i~~~~g~~~l~~~~~~P~~~---~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~~ 123 (323)
T 1lzl_A 47 DGVSLRELSAPGLDGDPEVKIRFVTPDNT---AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPE 123 (323)
T ss_dssp TTEEEEEEEECCSTTCCCEEEEEEEESSC---CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTT
T ss_pred CCceEEEEEecCCCCCceeEEEEEecCCC---CCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCCC
Confidence 3567788999999997 799998888653 35679999999976332 22345555667777 499999999999887
Q ss_pred CChhhhhcccccCCCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhCCC----ceeEEEecCCccc
Q 006375 449 LGRQWYENGKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVD 521 (648)
Q Consensus 449 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~~~a~v~~~~~~d 521 (648)
... ...++|+.++++|+.+. ..+|+++|+++|+|+||++++.++.++|+ .++++|+.+|++|
T Consensus 124 ~~~-----------~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~ 192 (323)
T 1lzl_A 124 TTF-----------PGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELD 192 (323)
T ss_dssp SCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCC
T ss_pred CCC-----------CchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCccC
Confidence 532 13468999999999874 23688999999999999999999887665 4999999999987
Q ss_pred cccccc----CCCCC-CCccc----cccc-CCCCC----HHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHH
Q 006375 522 VLTTML----DPTIP-LTTAE----WEEW-GDPWK----EEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPA 587 (648)
Q Consensus 522 ~~~~~~----~~~~~-~~~~~----~~~~-g~~~~----~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~ 587 (648)
...... ....+ +.... +..| +.+.. ... ....+|.........||+||+||++|..+ .++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~sp~~~~~~~~~~P~li~~G~~D~~~--~~~~ 267 (323)
T 1lzl_A 193 DRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDV---SIYAAPSRATDLTGLPPTYLSTMELDPLR--DEGI 267 (323)
T ss_dssp TTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCC---CTTTCGGGCSCCTTCCCEEEEEETTCTTH--HHHH
T ss_pred CCcCchhHHHhccCCCCCHHHHHHHHHHhCCCCcccccccCC---CcccCcccCcccCCCChhheEECCcCCch--HHHH
Confidence 543110 00000 00000 0001 11100 000 01124443322223456999999999987 5889
Q ss_pred HHHHHHHhcCCCCCeEEEEecCCCCccCCC-ch-HHHHHHHHHHHHHHHHhcCCC
Q 006375 588 KFVAKLREMKTDDNILLFKCELGAGHFSKS-GR-FERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 588 ~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~-~~-~~~~~~~~~~~~fl~~~l~~~ 640 (648)
+++++|++++.+.++++++ +++|+... .. ....+....+.+||.++|+..
T Consensus 268 ~~~~~l~~~g~~~~~~~~~---g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 319 (323)
T 1lzl_A 268 EYALRLLQAGVSVELHSFP---GTFHGSALVATAAVSERGAAEALTAIRRGLRSL 319 (323)
T ss_dssp HHHHHHHHTTCCEEEEEET---TCCTTGGGSTTSHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHcCCCEEEEEeC---cCccCcccCccCHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999887777775 88996432 11 112223446789999998743
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=180.56 Aligned_cols=214 Identities=15% Similarity=0.130 Sum_probs=151.1
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChh
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 452 (648)
.+..+.+.+++ +|.++.++++.|++ +.|+||++||+.+....+.+......|+++||.|+++|+||.|.....
T Consensus 9 ~~~~~~~~~~~-~g~~l~~~~~~p~~------~~p~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~ 81 (223)
T 2o2g_A 9 QPQEYAVSVSV-GEVKLKGNLVIPNG------ATGIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLTQEEEEID 81 (223)
T ss_dssp CCCEEEEEEEE-TTEEEEEEEECCTT------CCEEEEEECCTTCCTTCHHHHHHHHHHHHHTCEEEEECSSCHHHHHHH
T ss_pred CceeeEEEEec-CCeEEEEEEecCCC------CceEEEEecCCCCCCCccchHHHHHHHHHCCCEEEEEcCCCcCCCCcc
Confidence 35567888886 88899999776643 479999999976655443444556788889999999999986643222
Q ss_pred hhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCC
Q 006375 453 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 532 (648)
Q Consensus 453 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~ 532 (648)
.........-....+|+.++++++..+..+|+++++++|+|+||.+++.++.++|+.++++|+.+|..++..
T Consensus 82 ~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~-------- 153 (223)
T 2o2g_A 82 LRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLAP-------- 153 (223)
T ss_dssp HHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGCT--------
T ss_pred chhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcCH--------
Confidence 111000011112357899999999998888999999999999999999999999999999999998755311
Q ss_pred CCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCC
Q 006375 533 LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 612 (648)
Q Consensus 533 ~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g 612 (648)
..+.++++| +|+++|++|..+|. + ..+.+++.+.+.++++++ +++
T Consensus 154 ---------------------------~~~~~~~~P-~l~i~g~~D~~~~~-~---~~~~~~~~~~~~~~~~~~---~~~ 198 (223)
T 2o2g_A 154 ---------------------------SALPHVKAP-TLLIVGGYDLPVIA-M---NEDALEQLQTSKRLVIIP---RAS 198 (223)
T ss_dssp ---------------------------TTGGGCCSC-EEEEEETTCHHHHH-H---HHHHHHHCCSSEEEEEET---TCC
T ss_pred ---------------------------HHHhcCCCC-EEEEEccccCCCCH-H---HHHHHHhhCCCeEEEEeC---CCC
Confidence 123344567 99999999999863 2 334445555555555554 789
Q ss_pred ccCCCc-hHHHHHHHHHHHHHHHHhcC
Q 006375 613 HFSKSG-RFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 613 H~~~~~-~~~~~~~~~~~~~fl~~~l~ 638 (648)
|..... ..+.+ ...+.+||.++|+
T Consensus 199 H~~~~~~~~~~~--~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 199 HLFEEPGALTAV--AQLASEWFMHYLR 223 (223)
T ss_dssp TTCCSTTHHHHH--HHHHHHHHHHHCC
T ss_pred cccCChHHHHHH--HHHHHHHHHHhcC
Confidence 975442 22222 2356899998874
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-21 Score=188.31 Aligned_cols=239 Identities=18% Similarity=0.270 Sum_probs=156.7
Q ss_pred EEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhccc
Q 006375 379 KWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGK 458 (648)
Q Consensus 379 ~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 458 (648)
+.++ .+|.+|.+++..|++. .++.|+||++||..+......|...+..|+++||.|+++|+||+|........
T Consensus 4 ~~~~-~~g~~l~~~~~~p~~~---~~~~p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~--- 76 (251)
T 2wtm_A 4 MYID-CDGIKLNAYLDMPKNN---PEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFED--- 76 (251)
T ss_dssp EEEE-ETTEEEEEEEECCTTC---CSSEEEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCGGG---
T ss_pred eEEe-cCCcEEEEEEEccCCC---CCCCCEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEecCCCCCCCCCcccc---
Confidence 3444 4888999987777542 24578999999966553233456666788889999999999999866432211
Q ss_pred ccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc-----CCCC-C
Q 006375 459 FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML-----DPTI-P 532 (648)
Q Consensus 459 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~-----~~~~-~ 532 (648)
.......+|+.++++++.+...+ +++.++|+||||.+++.++.++|++++++|+.+|...+..... .... +
T Consensus 77 -~~~~~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 153 (251)
T 2wtm_A 77 -HTLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDP 153 (251)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHHHHTEETTEECBT
T ss_pred -CCHHHHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHHhhhhhccccCCc
Confidence 01112357888888988765433 5999999999999999999999999999999998754321100 0000 0
Q ss_pred CCccccc-cc-CCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCC
Q 006375 533 LTTAEWE-EW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 610 (648)
Q Consensus 533 ~~~~~~~-~~-g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 610 (648)
.....+. .+ +.......+..+..+++...+.++++| +|++||++|..||+..+.++.+.+. ..++++++ +
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~---~ 225 (251)
T 2wtm_A 154 ENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKP-VLIVHGDQDEAVPYEASVAFSKQYK----NCKLVTIP---G 225 (251)
T ss_dssp TBCCSEEEETTTEEEETHHHHHHTTCCHHHHHHHCCSC-EEEEEETTCSSSCHHHHHHHHHHSS----SEEEEEET---T
T ss_pred hhcchHHhhhhccccchHHHHHHHccCHHHHHHhcCCC-EEEEEeCCCCCcChHHHHHHHHhCC----CcEEEEEC---C
Confidence 0000000 11 100111223333444555556677888 9999999999999998888877663 34455554 8
Q ss_pred CCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 611 AGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 611 ~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
+||.. ....+.+.+ .+.+||.++|.
T Consensus 226 ~gH~~-~~~~~~~~~--~i~~fl~~~~~ 250 (251)
T 2wtm_A 226 DTHCY-DHHLELVTE--AVKEFMLEQIA 250 (251)
T ss_dssp CCTTC-TTTHHHHHH--HHHHHHHHHHC
T ss_pred CCccc-chhHHHHHH--HHHHHHHHhcc
Confidence 89987 555443333 56889988764
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=186.66 Aligned_cols=214 Identities=16% Similarity=0.114 Sum_probs=152.9
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
+.+.+++.+|.++.++++.|++ ++.|+||++||..+... .+...+..|+++||.|+++|+||.|..+..+...
T Consensus 4 ~~~~~~~~~g~~l~~~~~~p~~-----~~~p~vv~~hG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~ 76 (236)
T 1zi8_A 4 EGISIQSYDGHTFGALVGSPAK-----APAPVIVIAQDIFGVNA--FMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQ 76 (236)
T ss_dssp TTCCEECTTSCEECEEEECCSS-----CSEEEEEEECCTTBSCH--HHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCTT
T ss_pred ceEEEecCCCCeEEEEEECCCC-----CCCCEEEEEcCCCCCCH--HHHHHHHHHHhCCcEEEeccccccCCCccccccc
Confidence 3456778899999999777653 46799999999765532 4555667888899999999999988765321100
Q ss_pred -----------ccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccc
Q 006375 457 -----------GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 525 (648)
Q Consensus 457 -----------~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~ 525 (648)
..........+|+.++++++.++..++ ++|+++|+|+||.+++.++.++| ++++++..|....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~--- 150 (236)
T 1zi8_A 77 DERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVGLE--- 150 (236)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSSGG---
T ss_pred chhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcccc---
Confidence 000111234689999999998876544 79999999999999999999988 8888887764211
Q ss_pred ccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEE
Q 006375 526 MLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 605 (648)
Q Consensus 526 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 605 (648)
++...+.++++| +|+++|++|..||+.++.+++++++..+ +.+++++
T Consensus 151 -------------------------------~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~ 197 (236)
T 1zi8_A 151 -------------------------------KQLNKVPEVKHP-ALFHMGGQDHFVPAPSRQLITEGFGANP-LLQVHWY 197 (236)
T ss_dssp -------------------------------GCGGGGGGCCSC-EEEEEETTCTTSCHHHHHHHHHHHTTCT-TEEEEEE
T ss_pred -------------------------------cchhhhhhcCCC-EEEEecCCCCCCCHHHHHHHHHHHHhCC-CceEEEE
Confidence 122334455677 9999999999999999999999997655 5555555
Q ss_pred EecCCCCccCCCchH-----H-HHHHHHHHHHHHHHhcCC
Q 006375 606 KCELGAGHFSKSGRF-----E-RLREAAFTYTFLMRALSM 639 (648)
Q Consensus 606 ~~~~~~gH~~~~~~~-----~-~~~~~~~~~~fl~~~l~~ 639 (648)
+ +++|....... + .-+....+.+||.++|+.
T Consensus 198 ~---~~~H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 234 (236)
T 1zi8_A 198 E---EAGHSFARTGSSGYVASAAALANERTLDFLVPLQSR 234 (236)
T ss_dssp T---TCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC-
T ss_pred C---CCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcCC
Confidence 4 78996543211 1 112233568999999864
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-20 Score=197.27 Aligned_cols=226 Identities=15% Similarity=0.140 Sum_probs=154.9
Q ss_pred EEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHh
Q 006375 388 QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFT 467 (648)
Q Consensus 388 ~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~ 467 (648)
.+.++++.|++. ++.|+||++||+.+.. +...+..|+++||.|+++|+||.++.+.... ...++
T Consensus 160 ~l~~~l~~P~~~----~~~P~Vv~lhG~~~~~----~~~~a~~La~~Gy~Vla~D~rG~~~~~~~~~--------~~~~~ 223 (446)
T 3hlk_A 160 RVRGTLFLPPEP----GPFPGIVDMFGTGGGL----LEYRASLLAGKGFAVMALAYYNYEDLPKTME--------TLHLE 223 (446)
T ss_dssp TEEEEEEECSSS----CCBCEEEEECCSSCSC----CCHHHHHHHTTTCEEEEECCSSSTTSCSCCS--------EEEHH
T ss_pred eEEEEEEeCCCC----CCCCEEEEECCCCcch----hhHHHHHHHhCCCEEEEeccCCCCCCCcchh--------hCCHH
Confidence 589998888653 5689999999976542 2334778889999999999999877644321 13579
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc---C---CCCCCCcc-----
Q 006375 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML---D---PTIPLTTA----- 536 (648)
Q Consensus 468 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~---~---~~~~~~~~----- 536 (648)
|+.++++||.++..+|+++|+++|+||||.+++.++.++|+ ++++|+.+|......... . +..+....
T Consensus 224 d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (446)
T 3hlk_A 224 YFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVT 302 (446)
T ss_dssp HHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECCCCBCGGGCEEC
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCccccchhccccc
Confidence 99999999999988899999999999999999999999998 899999888654321100 0 00100000
Q ss_pred -----cc-cccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchH-HHHHHHHHhcCCC-CCeEEEEec
Q 006375 537 -----EW-EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEP-AKFVAKLREMKTD-DNILLFKCE 608 (648)
Q Consensus 537 -----~~-~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~-~~~~~~l~~~~~~-~~~~~~~~~ 608 (648)
.+ ..+..+..... ......+.++++| +|++||++|..+|..+. ..++++|++++.+ .++++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~P-vLii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~p-- 373 (446)
T 3hlk_A 303 KDGYADIVDVLNSPLEGPD------QKSFIPVERAEST-FLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYP-- 373 (446)
T ss_dssp SSSCEECTTCBCCTTSGGG------GGGBCCGGGCCSE-EEEEEETTCCSSCHHHHHHHHHHHHHHTTCCCCEEEEET--
T ss_pred cchHHHHHHHHhchhhccc------cccccCHHHCCCC-EEEEEeCCCCCcChHHHHHHHHHHHHHcCCCCcEEEEEC--
Confidence 00 11112211110 1112234555676 99999999999998554 7889999999888 6777776
Q ss_pred CCCCccCCC--------------------------chHHHHHHHHHHHHHHHHhcCCC
Q 006375 609 LGAGHFSKS--------------------------GRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 609 ~~~gH~~~~--------------------------~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
++||.... ......+....+.+||.++|+..
T Consensus 374 -gagH~~~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~~~ 430 (446)
T 3hlk_A 374 -ETGHYIEPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLGGH 430 (446)
T ss_dssp -TBCSCCCSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -CCCCeECCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 88997620 11112223446799999999764
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=198.24 Aligned_cols=244 Identities=15% Similarity=0.149 Sum_probs=164.9
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCch-hHHHHHHCCCEEEEEccCCCCCCChhh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS-SRLSLLDRGFIFAIAQIRGGGELGRQW 453 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~G~~v~~~~~rG~g~~g~~~ 453 (648)
..+++.++. +|.+++++++ |++ +++.|+||++||..+... .+.. ....++.+||.|+++|+||.|+.....
T Consensus 134 ~~~~~~i~~-~~~~l~~~~~-~~~----~~~~p~vv~~HG~~~~~~--~~~~~~~~~~~~~g~~vi~~D~~G~G~s~~~~ 205 (405)
T 3fnb_A 134 PLKSIEVPF-EGELLPGYAI-ISE----DKAQDTLIVVGGGDTSRE--DLFYMLGYSGWEHDYNVLMVDLPGQGKNPNQG 205 (405)
T ss_dssp CCEEEEEEE-TTEEEEEEEE-CCS----SSCCCEEEEECCSSCCHH--HHHHHTHHHHHHTTCEEEEECCTTSTTGGGGT
T ss_pred CcEEEEEeE-CCeEEEEEEE-cCC----CCCCCEEEEECCCCCCHH--HHHHHHHHHHHhCCcEEEEEcCCCCcCCCCCC
Confidence 457777776 6788999865 433 245699999999644322 1222 223667899999999999988753211
Q ss_pred hhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc---CC-
Q 006375 454 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML---DP- 529 (648)
Q Consensus 454 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~---~~- 529 (648)
........+|+.+++++|..++ .+|+++|+|+||++++.++.++| .++++|+.+|+.++..... ..
T Consensus 206 -----~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~~~~~~~ 275 (405)
T 3fnb_A 206 -----LHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFRISFSTA 275 (405)
T ss_dssp -----CCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHHHHCC--
T ss_pred -----CCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHHHhhhhh
Confidence 1122345789999999987754 78999999999999999999999 8999999999988654321 00
Q ss_pred -CCCCCc-ccc-------------------cccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHH
Q 006375 530 -TIPLTT-AEW-------------------EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAK 588 (648)
Q Consensus 530 -~~~~~~-~~~-------------------~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~ 588 (648)
..|... ..+ ..++..........+..+++...+.++++| +||++|++|..||+.++.+
T Consensus 276 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vLii~G~~D~~v~~~~~~~ 354 (405)
T 3fnb_A 276 LKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVP-SLFLVGAGEDSELMRQSQV 354 (405)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSC-EEEEEETTSCHHHHHHHHH
T ss_pred hhCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCC-EEEEecCCCcCCChHHHHH
Confidence 011000 000 001111111222233344554456777888 9999999999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 589 FVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 589 ~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
++++++..+.+.++++++...++||.........+. ..+.+||.++|+.
T Consensus 355 l~~~l~~~~~~~~l~~~~~~~h~gh~~~~~~~~~~~--~~i~~fL~~~l~~ 403 (405)
T 3fnb_A 355 LYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMH--YQVFEWLNHIFKK 403 (405)
T ss_dssp HHHHHHHTTCCEEEEEECTTTTCCSGGGGGGHHHHH--HHHHHHHHHHHC-
T ss_pred HHHHhccCCCCceEEEEcCCccchhccccchHHHHH--HHHHHHHHHHhCc
Confidence 999999988888888887655666655444443333 3578999999974
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-21 Score=192.86 Aligned_cols=237 Identities=12% Similarity=0.090 Sum_probs=161.4
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 454 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 454 (648)
..+.+.+++ +|.++.++++.|+ +.|+||++||+.+... .|...+..|+++||.|+++|+||.|+......
T Consensus 5 ~~~~~~~~~-~g~~l~~~~~~p~-------~~p~vv~~HG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~g~s~~~~~ 74 (290)
T 3ksr_A 5 KLSSIEIPV-GQDELSGTLLTPT-------GMPGVLFVHGWGGSQH--HSLVRAREAVGLGCICMTFDLRGHEGYASMRQ 74 (290)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEE-------SEEEEEEECCTTCCTT--TTHHHHHHHHTTTCEEECCCCTTSGGGGGGTT
T ss_pred ceeeEEecC-CCeEEEEEEecCC-------CCcEEEEeCCCCCCcC--cHHHHHHHHHHCCCEEEEeecCCCCCCCCCcc
Confidence 456777776 7889999988876 3699999999766433 46666778888999999999999887654322
Q ss_pred hcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCC
Q 006375 455 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLT 534 (648)
Q Consensus 455 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~ 534 (648)
. .......+|+.+++++|..+..+|+++|+++|+|+||.+++.++.++| ++++++.+|.......+..+...+.
T Consensus 75 ~----~~~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~~~~~~~~~~~ 148 (290)
T 3ksr_A 75 S----VTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDAHWDQPKVSLN 148 (290)
T ss_dssp T----CBHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSSCTTSBHHHHH
T ss_pred c----ccHHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhhhhhccccccc
Confidence 1 111234689999999999988888999999999999999999999888 7788888887654322110000000
Q ss_pred -ccccccc-CCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCC
Q 006375 535 -TAEWEEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 612 (648)
Q Consensus 535 -~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g 612 (648)
...+..+ ..+... ...++...+.++++| +|++||++|..|++.++.+++++++..+ +.++++++ ++|
T Consensus 149 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~P-~lii~G~~D~~v~~~~~~~~~~~~~~~~-~~~~~~~~---~~g 217 (290)
T 3ksr_A 149 ADPDLMDYRRRALAP------GDNLALAACAQYKGD-VLLVEAENDVIVPHPVMRNYADAFTNAR-SLTSRVIA---GAD 217 (290)
T ss_dssp HSTTHHHHTTSCCCG------GGCHHHHHHHHCCSE-EEEEEETTCSSSCHHHHHHHHHHTTTSS-EEEEEEET---TCC
T ss_pred CChhhhhhhhhhhhh------ccccHHHHHHhcCCC-eEEEEecCCcccChHHHHHHHHHhccCC-CceEEEcC---CCC
Confidence 0000001 111110 111222334556777 9999999999999999999999987665 44455554 889
Q ss_pred ccCCCc-hHHHHHHHHHHHHHHHHhcCCC
Q 006375 613 HFSKSG-RFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 613 H~~~~~-~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
|..... ..+.+ ...+.+||.++++..
T Consensus 218 H~~~~~~~~~~~--~~~i~~fl~~~~~~~ 244 (290)
T 3ksr_A 218 HALSVKEHQQEY--TRALIDWLTEMVVGR 244 (290)
T ss_dssp TTCCSHHHHHHH--HHHHHHHHHHHHHTC
T ss_pred CCCCcchHHHHH--HHHHHHHHHHHhcCC
Confidence 975432 22222 235689999998654
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-21 Score=192.64 Aligned_cols=209 Identities=18% Similarity=0.195 Sum_probs=150.3
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCC-CCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhh
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN-DPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 455 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 455 (648)
..+.+. +..+.+.++.|++. .++.|+||++|||+.... ...+......|+++||+|+++|+||+++....
T Consensus 59 ~~i~y~---~~~~~~~~~~p~~~---~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~~~--- 129 (303)
T 4e15_A 59 DHLRYG---EGRQLVDVFYSEKT---TNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVTLE--- 129 (303)
T ss_dssp EEEECS---STTCEEEEEECTTC---CTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSCHH---
T ss_pred eeeccC---CCCcEEEEEecCCC---CCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCChh---
Confidence 444454 33456666677543 457899999999764433 33355667888999999999999998865322
Q ss_pred cccccCCCCcHhHHHHHHHHHHHc-CCCCCCeEEEEeeChhHHHHHHHHhhCC-------CceeEEEecCCccccccccc
Q 006375 456 NGKFLKKKNTFTDFIACAEYLIKN-CYCTKEKLCIEGRSAGGLLIGAVLNMRP-------DLFKAAVAAVPFVDVLTTML 527 (648)
Q Consensus 456 ~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p-------~~~~a~v~~~~~~d~~~~~~ 527 (648)
..++|+.++++|+.+. ...++++|+++|+||||++++.++.+.+ +.++++|+.+|+.|+.....
T Consensus 130 --------~~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~~~ 201 (303)
T 4e15_A 130 --------QLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSN 201 (303)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHHHT
T ss_pred --------HHHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHhhhc
Confidence 2468999999999873 2345789999999999999999888654 27999999999998754331
Q ss_pred CCCCCCCcccccccCCCCCHHHHHHHHcCCcc-ccCCCC----CCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCe
Q 006375 528 DPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV-DNVKAQ----NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 602 (648)
Q Consensus 528 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~-~~~~~~----~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~ 602 (648)
. .... .. ..++.. ++ .+...+|+ ..+..+ .+| +||+||++|..||+.++.+++++|++++.++++
T Consensus 202 ~-~~~~-~~--~~~~~~--~~---~~~~~sp~~~~~~~~~~~~~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~ 271 (303)
T 4e15_A 202 L-ESVN-PK--NILGLN--ER---NIESVSPMLWEYTDVTVWNSTK-IYVVAAEHDSTTFIEQSRHYADVLRKKGYKASF 271 (303)
T ss_dssp C-TTTS-GG--GTTCCC--TT---TTTTTCGGGCCCCCGGGGTTSE-EEEEEEEESCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred c-cccc-hh--hhhcCC--HH---HHHHcCchhhcccccccCCCCC-EEEEEeCCCCCCchHHHHHHHHHHHHCCCceEE
Confidence 1 0000 00 111211 11 12456787 566654 565 999999999999999999999999999988888
Q ss_pred EEEEecCCCCccC
Q 006375 603 LLFKCELGAGHFS 615 (648)
Q Consensus 603 ~~~~~~~~~gH~~ 615 (648)
++++ +++|+.
T Consensus 272 ~~~~---g~~H~~ 281 (303)
T 4e15_A 272 TLFK---GYDHFD 281 (303)
T ss_dssp EEEE---EEETTH
T ss_pred EEeC---CCCchH
Confidence 8887 779954
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-20 Score=187.99 Aligned_cols=239 Identities=15% Similarity=0.105 Sum_probs=152.6
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCC-CCCCchhHHHHHHC-CCEEEEEccCCCCCCC
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN-DPAFNSSRLSLLDR-GFIFAIAQIRGGGELG 450 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g 450 (648)
....+.+.+ +|.++ ++|++. ..+.|+||++|||..... ...+......|+.+ ||+|+++|||++++..
T Consensus 57 ~~~~~~~~~---~g~~~----~~p~~~---~~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~~ 126 (322)
T 3k6k_A 57 GVELTLTDL---GGVPC----IRQATD---GAGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENP 126 (322)
T ss_dssp TCEEEEEEE---TTEEE----EEEECT---TCCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTSC
T ss_pred CceEEEEEE---CCEeE----EecCCC---CCCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCCC
Confidence 344444444 56544 466653 223445999999753322 23344455677765 9999999999887643
Q ss_pred hhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCc----eeEEEecCCcccccccc
Q 006375 451 RQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL----FKAAVAAVPFVDVLTTM 526 (648)
Q Consensus 451 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----~~a~v~~~~~~d~~~~~ 526 (648)
. ...++|+.++++||.++ .+|+++|+|+|+|+||.+++.++.+.|+. ++++|+.+|++|+....
T Consensus 127 ~-----------~~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~ 194 (322)
T 3k6k_A 127 F-----------PAAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLSR 194 (322)
T ss_dssp T-----------THHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCS
T ss_pred C-----------chHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcccCc
Confidence 1 24568999999999988 46899999999999999999999887664 99999999998864321
Q ss_pred cCCCCCCCcccccccCCC-CCHHHHHHH------------HcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHH
Q 006375 527 LDPTIPLTTAEWEEWGDP-WKEEFYFYM------------KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKL 593 (648)
Q Consensus 527 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~------------~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l 593 (648)
.. ...... ..+ ........+ ...+|+....+ ..||+||+||++|..+ .++.+++++|
T Consensus 195 ~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-~~pP~li~~G~~D~~~--~~~~~~~~~l 264 (322)
T 3k6k_A 195 WS------NSNLAD-RDFLAEPDTLGEMSELYVGGEDRKNPLISPVYADLS-GLPEMLIHVGSEEALL--SDSTTLAERA 264 (322)
T ss_dssp HH------HHHTGG-GCSSSCHHHHHHHHHHHHTTSCTTCTTTCGGGSCCT-TCCCEEEEEESSCTTH--HHHHHHHHHH
T ss_pred cc------hhhccC-CCCcCCHHHHHHHHHHhcCCCCCCCCcCCccccccc-CCCcEEEEECCcCccH--HHHHHHHHHH
Confidence 00 000000 000 011111100 12356544322 4466999999999874 5899999999
Q ss_pred HhcCCCCCeEEEEecCCCCccCCCc---hHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 006375 594 REMKTDDNILLFKCELGAGHFSKSG---RFERLREAAFTYTFLMRALSMLPSVGSE 646 (648)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~~~~~~~~ 646 (648)
++++++.++++++ +++|..... ..+..+....+.+||.++|+...+..|+
T Consensus 265 ~~~g~~~~l~~~~---g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~~~~~~~ 317 (322)
T 3k6k_A 265 GAAGVSVELKIWP---DMPHVFQMYGKFVNAADISIKEICHWISARISKLAAALEH 317 (322)
T ss_dssp HHTTCCEEEEEET---TCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC--------
T ss_pred HHCCCCEEEEEEC---CCccccccccccChHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 9999888777775 889965321 1222233456789999999876655554
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=194.42 Aligned_cols=246 Identities=16% Similarity=0.158 Sum_probs=164.6
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCc-hhHHHHHHCCCEEEEEccCCCCCCCh
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN-SSRLSLLDRGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~~~rG~g~~g~ 451 (648)
.+..+.+.+++.||.++.++++.|++. ..++.|+||++||+.+... .+. .....|+++||.|+++|+||.|....
T Consensus 65 ~~~~~~~~~~~~~g~~~~~~~~~p~~~--~~~~~p~vv~~hG~~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~ 140 (367)
T 2hdw_A 65 KVEHRKVTFANRYGITLAADLYLPKNR--GGDRLPAIVIGGPFGAVKE--QSSGLYAQTMAERGFVTLAFDPSYTGESGG 140 (367)
T ss_dssp TEEEEEEEEECTTSCEEEEEEEEESSC--CSSCEEEEEEECCTTCCTT--SHHHHHHHHHHHTTCEEEEECCTTSTTSCC
T ss_pred CceeEEEEEecCCCCEEEEEEEeCCCC--CCCCCCEEEEECCCCCcch--hhHHHHHHHHHHCCCEEEEECCCCcCCCCC
Confidence 346788999999999999998888762 2356899999999765432 233 24678889999999999999886543
Q ss_pred hhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc---C
Q 006375 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML---D 528 (648)
Q Consensus 452 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~---~ 528 (648)
.... ........+|+.++++++.++..+|+++|+++|+|+||.+++.++.++| .++++|+.+|+. +..... .
T Consensus 141 ~~~~---~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~p~~-~~~~~~~~~~ 215 (367)
T 2hdw_A 141 QPRN---VASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTSTMYD-MTRVMSKGYN 215 (367)
T ss_dssp SSSS---CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCC-HHHHHHHTTT
T ss_pred cCcc---ccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEecccc-ccHHHhhhhc
Confidence 2211 0111245789999999999988888999999999999999999999998 589999998763 211000 0
Q ss_pred -------------------------------CCCC---CCc----cc-cccc-------------CCCCCHHHHHHHHcC
Q 006375 529 -------------------------------PTIP---LTT----AE-WEEW-------------GDPWKEEFYFYMKSY 556 (648)
Q Consensus 529 -------------------------------~~~~---~~~----~~-~~~~-------------g~~~~~~~~~~~~~~ 556 (648)
...| ... .. +..+ ...........+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (367)
T 2hdw_A 216 DSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMNM 295 (367)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHHTTS
T ss_pred cccchHHHHHHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHhcCC
Confidence 0001 000 00 0000 000111223345567
Q ss_pred CccccCCCCC-CCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 557 SPVDNVKAQN-YPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 557 sp~~~~~~~~-~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
+|...+.+++ +| +|++||++|. ++.++.+++++ .+.+.++++++ ++||+......+.. ....+.+||.+
T Consensus 296 ~~~~~~~~i~~~P-vLii~G~~D~--~~~~~~~~~~~---~~~~~~~~~~~---g~gH~~~~~~~~~~-~~~~i~~fl~~ 365 (367)
T 2hdw_A 296 PILTYIKEISPRP-ILLIHGERAH--SRYFSETAYAA---AAEPKELLIVP---GASHVDLYDRLDRI-PFDRIAGFFDE 365 (367)
T ss_dssp CSCTTGGGGTTSC-EEEEEETTCT--THHHHHHHHHH---SCSSEEEEEET---TCCTTHHHHCTTTS-CHHHHHHHHHH
T ss_pred ChhHhHHhhcCCc-eEEEecCCCC--CHHHHHHHHHh---CCCCeeEEEeC---CCCeeeeecCchhH-HHHHHHHHHHh
Confidence 7888888888 88 9999999998 77777777766 45556666665 88996422111111 12356789988
Q ss_pred hc
Q 006375 636 AL 637 (648)
Q Consensus 636 ~l 637 (648)
+|
T Consensus 366 ~l 367 (367)
T 2hdw_A 366 HL 367 (367)
T ss_dssp HC
T ss_pred hC
Confidence 75
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-20 Score=173.91 Aligned_cols=189 Identities=16% Similarity=0.197 Sum_probs=140.4
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCC---CCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCCh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSY---EICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~---~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 451 (648)
..+.+.+++.+| +++++++.|++. ++.|+||++||++ +......+......|+++||.|+.+|+||.|....
T Consensus 5 ~~~~~~~~~~~g-~l~~~~~~p~~~----~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~ 79 (208)
T 3trd_A 5 TNEDFLIQGPVG-QLEVMITRPKGI----EKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQG 79 (208)
T ss_dssp SSSCEEEECSSS-EEEEEEECCSSC----CCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTCCS
T ss_pred ccceEEEECCCc-eEEEEEEcCCCC----CCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCCCCCCC
Confidence 356788999999 899997776542 4679999999953 22222224455678888999999999999886644
Q ss_pred hhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCC
Q 006375 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI 531 (648)
Q Consensus 452 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~ 531 (648)
.+ .......+|+.++++++.++ .+.++++++|+|+||.+++.++ ++| .++++|+.+|..+...
T Consensus 80 ~~------~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~~~------- 142 (208)
T 3trd_A 80 RY------DNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFYEG------- 142 (208)
T ss_dssp CC------CTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTSGG-------
T ss_pred Cc------cchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEeccccccCC-------
Confidence 32 22234579999999999987 3458999999999999999999 677 7999999988762111
Q ss_pred CCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCC
Q 006375 532 PLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 611 (648)
Q Consensus 532 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 611 (648)
+ ..+...++| +|+++|++|..||+.++.++++++... .++++++ ++
T Consensus 143 ------------------------~---~~~~~~~~p-~l~i~g~~D~~~~~~~~~~~~~~~~~~---~~~~~~~---~~ 188 (208)
T 3trd_A 143 ------------------------F---ASLTQMASP-WLIVQGDQDEVVPFEQVKAFVNQISSP---VEFVVMS---GA 188 (208)
T ss_dssp ------------------------G---TTCCSCCSC-EEEEEETTCSSSCHHHHHHHHHHSSSC---CEEEEET---TC
T ss_pred ------------------------c---hhhhhcCCC-EEEEECCCCCCCCHHHHHHHHHHccCc---eEEEEeC---CC
Confidence 1 122333667 999999999999999988888776542 4555664 88
Q ss_pred CccCCCch
Q 006375 612 GHFSKSGR 619 (648)
Q Consensus 612 gH~~~~~~ 619 (648)
||......
T Consensus 189 ~H~~~~~~ 196 (208)
T 3trd_A 189 SHFFHGRL 196 (208)
T ss_dssp CSSCTTCH
T ss_pred CCcccccH
Confidence 99776543
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-21 Score=190.10 Aligned_cols=240 Identities=15% Similarity=0.147 Sum_probs=152.2
Q ss_pred EEEEEe-CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCC-CchhHHHHHHCCCEEEEEcc--CCCCCCChh
Q 006375 377 ERKWAS-ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQI--RGGGELGRQ 452 (648)
Q Consensus 377 ~~~~~~-s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~~--rG~g~~g~~ 452 (648)
+.+.+. ...|.++++.++.|++. . +++.|+||++||+.+...... +......++++||+|+++|+ ||.++.|..
T Consensus 17 ~~~~~~s~~~~~~~~~~v~~P~~~-~-~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~~~~~ 94 (282)
T 3fcx_A 17 KVFEHDSVELNCKMKFAVYLPPKA-E-TGKCPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDTSPRGCNIKGED 94 (282)
T ss_dssp EEEEEEETTTTEEEEEEEEECGGG-G-TSCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC----
T ss_pred EEEEEEchhcCCeeEEEEEcCCCC-C-CCCCCEEEEEcCCCCCccchhhcchHHHHhhcCCeEEEEeccccCcccccccc
Confidence 334343 45788999999999874 2 367899999999766543211 11114567788999999999 888865543
Q ss_pred ----------hhhcccccC---CCCcHhHHH-HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 453 ----------WYENGKFLK---KKNTFTDFI-ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 453 ----------~~~~~~~~~---~~~~~~D~~-~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
|+....... .....+++. ++++++.++..+|++||+++|+||||++++.++.++|++|+++|+.+|
T Consensus 95 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~ 174 (282)
T 3fcx_A 95 ESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAP 174 (282)
T ss_dssp ----CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCEEEESC
T ss_pred ccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEEEEeCC
Confidence 111100000 001123333 444555545458899999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCcccc-cccCCCCCHHHHHHHHcCCccccCCC---CCCCeEEEeecCCCCccCCch--HHHHHHH
Q 006375 519 FVDVLTTMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKA---QNYPHILVTAGLNDPRVMYSE--PAKFVAK 592 (648)
Q Consensus 519 ~~d~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~~~~---~~~P~~li~~g~~D~~v~~~~--~~~~~~~ 592 (648)
++++.... +....+ ..+|... . .+..++|...+.+ +..| +||+||++|..||..+ +.+++++
T Consensus 175 ~~~~~~~~------~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~p-~li~~G~~D~~v~~~~~~~~~~~~~ 242 (282)
T 3fcx_A 175 ICNPVLCP------WGKKAFSGYLGTDQ--S---KWKAYDATHLVKSYPGSQLD-ILIDQGKDDQFLLDGQLLPDNFIAA 242 (282)
T ss_dssp CCCGGGSH------HHHHHHHHHHC-----C---CGGGGCHHHHHTTCC---CC-EEEEEETTCHHHHTTSSCHHHHHHH
T ss_pred ccCcccCc------hhHHHHHHhcCCch--h---hhhhcCHHHHHHhcccCCCc-EEEEcCCCCcccccchhhHHHHHHH
Confidence 88754311 000011 1122210 0 1123455443333 3565 9999999999997655 6799999
Q ss_pred HHhcCCCCCeEEEEecCCCCccCCCchHHHHH-HHHHHHHHHHHhcC
Q 006375 593 LREMKTDDNILLFKCELGAGHFSKSGRFERLR-EAAFTYTFLMRALS 638 (648)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~-~~~~~~~fl~~~l~ 638 (648)
|++.+.+.++++++ +++|... .+. .+.+.+.|+.++|.
T Consensus 243 l~~~g~~~~~~~~~---g~~H~~~-----~~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 243 CTEKKIPVVFRLQE---DYDHSYY-----FIATFITDHIRHHAKYLN 281 (282)
T ss_dssp HHHTTCCEEEEEET---TCCSSHH-----HHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCceEEEECC---CCCcCHH-----HHHhhhHHHHHHHHHhhc
Confidence 99999887766665 8899532 122 23356788888875
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.6e-20 Score=185.15 Aligned_cols=241 Identities=18% Similarity=0.152 Sum_probs=160.9
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCC-CCCCCCchhHHHHHHC-CCEEEEEccCCCCCCC
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELG 450 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g 450 (648)
....+.+.+++.+| +|++++++|++. ++.|+||++|||... .....|......|+.+ ||.|+++|+||.|+..
T Consensus 45 ~~~~~~~~i~~~~g-~i~~~~~~p~~~----~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~g~~~ 119 (311)
T 2c7b_A 45 IAETRDVHIPVSGG-SIRARVYFPKKA----AGLPAVLYYHGGGFVFGSIETHDHICRRLSRLSDSVVVSVDYRLAPEYK 119 (311)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEESSSC----SSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTCEEEEECCCCTTTSC
T ss_pred cceEEEEEecCCCC-cEEEEEEecCCC----CCCcEEEEECCCcccCCChhhhHHHHHHHHHhcCCEEEEecCCCCCCCC
Confidence 44678888988888 899998888653 346999999997522 2233455566777776 9999999999988753
Q ss_pred hhhhhcccccCCCCcHhHHHHHHHHHHHcC---CCCCCeEEEEeeChhHHHHHHHHhhCCC----ceeEEEecCCccccc
Q 006375 451 RQWYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVDVL 523 (648)
Q Consensus 451 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~~~a~v~~~~~~d~~ 523 (648)
. ....+|+.++++|+.+.. .+|+++|+++|+|+||.+++.++.++|+ .++++|+.+|++|+.
T Consensus 120 ~-----------~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~ 188 (311)
T 2c7b_A 120 F-----------PTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPVVNMT 188 (311)
T ss_dssp T-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCCS
T ss_pred C-----------CccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCccCCc
Confidence 2 134689999999998762 3678999999999999999999987765 599999999998842
Q ss_pred ccc--------cCCCCCCCccc--c--ccc-CCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHH
Q 006375 524 TTM--------LDPTIPLTTAE--W--EEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFV 590 (648)
Q Consensus 524 ~~~--------~~~~~~~~~~~--~--~~~-g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~ 590 (648)
... ......+.... + ..| +.+..... ...+|+... -...||+||++|++|+.++ ++..++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~-l~~~~P~lii~G~~D~~~~--~~~~~~ 261 (311)
T 2c7b_A 189 GVPTASLVEFGVAETTSLPIELMVWFGRQYLKRPEEAYD----FKASPLLAD-LGGLPPALVVTAEYDPLRD--EGELYA 261 (311)
T ss_dssp SCCCHHHHHHHHCTTCSSCHHHHHHHHHHHCSSTTGGGS----TTTCGGGSC-CTTCCCEEEEEETTCTTHH--HHHHHH
T ss_pred cccccCCccHHHhccCCCCHHHHHHHHHHhCCCCccccC----cccCccccc-ccCCCcceEEEcCCCCchH--HHHHHH
Confidence 110 00000000000 0 011 11110000 123444321 1134459999999999986 678889
Q ss_pred HHHHhcCCCCCeEEEEecCCCCccCCC--c-hHHHHHHHHHHHHHHHHhcCC
Q 006375 591 AKLREMKTDDNILLFKCELGAGHFSKS--G-RFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 591 ~~l~~~~~~~~~~~~~~~~~~gH~~~~--~-~~~~~~~~~~~~~fl~~~l~~ 639 (648)
++++..+.+.++++++ +++|+... . ..+..+....+.+||.++|+.
T Consensus 262 ~~l~~~g~~~~~~~~~---g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 310 (311)
T 2c7b_A 262 YKMKASGSRAVAVRFA---GMVHGFVSFYPFVDAGREALDLAAASIRSGLQP 310 (311)
T ss_dssp HHHHHTTCCEEEEEET---TCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCEEEEEeC---CCccccccccccCHHHHHHHHHHHHHHHHHhcC
Confidence 9999988887766665 88996531 1 122222344678999998863
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=185.53 Aligned_cols=241 Identities=13% Similarity=0.138 Sum_probs=156.8
Q ss_pred eEEEEE-eCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCch---hHHHHHHCCCEEEEEccCCCCCCCh
Q 006375 376 TERKWA-SASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---SRLSLLDRGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 376 ~~~~~~-~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~~~rG~g~~g~ 451 (648)
.+.+.+ ....|.++++.++.|++. . +++.|+||++||+.+.... |.. ....+.++||+|+++|+||.|....
T Consensus 15 ~~~~~~~s~~~g~~~~~~v~~P~~~-~-~~~~p~vv~lHG~~~~~~~--~~~~~~~~~~~~~~g~~vv~~d~~g~G~s~~ 90 (278)
T 3e4d_A 15 QGVFSHQSETLKSEMTFAVYVPPKA-I-HEPCPVVWYLSGLTCTHAN--VMEKGEYRRMASELGLVVVCPDTSPRGNDVP 90 (278)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGG-G-TSCEEEEEEECCTTCCSHH--HHHHSCCHHHHHHHTCEEEECCSSCCSTTSC
T ss_pred EEEEEEeccccCCcceEEEEcCCCC-C-CCCCCEEEEEcCCCCCccc--hhhcccHHHHHhhCCeEEEecCCcccCcccc
Confidence 344544 445788999999999875 3 5678999999997655432 222 2234445699999999998775422
Q ss_pred h----h--------hhccccc--CCCCcHhHHH--HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEe
Q 006375 452 Q----W--------YENGKFL--KKKNTFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 515 (648)
Q Consensus 452 ~----~--------~~~~~~~--~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~ 515 (648)
. | +...... .....+.+.. ++++++.+...+|+++|+++|+||||++++.++.++|++|+++|+
T Consensus 91 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~ 170 (278)
T 3e4d_A 91 DELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSCSA 170 (278)
T ss_dssp CCTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCEEE
T ss_pred cccccccccCCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceEEE
Confidence 1 1 1110000 0111223332 366777766567889999999999999999999999999999999
Q ss_pred cCCcccccccccCCCCCCCcccc-cccCCCCCHHHHHHHHcCCccccCCCC-CCCeEEEeecCCCCccCCc-hHHHHHHH
Q 006375 516 AVPFVDVLTTMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMYS-EPAKFVAK 592 (648)
Q Consensus 516 ~~~~~d~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~~~~~-~~P~~li~~g~~D~~v~~~-~~~~~~~~ 592 (648)
.+|++++... ++....+ ..+|.. ... +..++|...+.+. ..||+||+||++|+.||.. ++.+++++
T Consensus 171 ~~~~~~~~~~------~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~ 239 (278)
T 3e4d_A 171 FAPIVAPSSA------DWSEPALEKYLGAD--RAA---WRRYDACSLVEDGARFPEFLIDQGKADSFLEKGLRPWLFEEA 239 (278)
T ss_dssp ESCCSCGGGC------TTTHHHHHHHHCSC--GGG---GGGGCHHHHHHTTCCCSEEEEEEETTCTTHHHHTCTHHHHHH
T ss_pred eCCcccccCC------ccchhhHHHhcCCc--HHH---HHhcChhhHhhcCCCCCcEEEEecCCCcccccchhHHHHHHH
Confidence 9998885432 1111111 112321 111 1345555555444 2346999999999999842 27899999
Q ss_pred HHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 593 LREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
|++.+.+.++++++ +++|.... .-..+.+.+.|+.++|+
T Consensus 240 l~~~g~~~~~~~~~---g~~H~~~~----~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 240 IKGTDIGLTLRMHD---RYDHSYYF----ISTFMDDHLKWHAERLG 278 (278)
T ss_dssp HTTSSCEEEEEEET---TCCSSHHH----HHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCceEEEeC---CCCcCHHH----HHHHHHHHHHHHHHhcC
Confidence 99988876666664 78995311 11223456889988875
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=186.49 Aligned_cols=243 Identities=15% Similarity=0.115 Sum_probs=155.1
Q ss_pred eEEEEEeC-CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCC-CchhHHHHHHCCCEEEEEccCCCCC-----
Q 006375 376 TERKWASA-SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQIRGGGE----- 448 (648)
Q Consensus 376 ~~~~~~~s-~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~~rG~g~----- 448 (648)
.+++.+.+ ..|.++++.++.|++. ..+++.|+||++||+.+....+. +......+.++|++|+++|.++.|.
T Consensus 15 ~~~~~~~s~~~g~~~~~~v~~P~~~-~~~~~~P~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~~~~~ 93 (280)
T 3ls2_A 15 HKQYTHSAVSTHCTMRFAVFLPPGA-SESNKVPVLYWLSGLTCTDENFMQKAGAFKKAAELGIAIVAPDTSPRGDNVPNE 93 (280)
T ss_dssp EEEEEEEETTTTEEEEEEEEECTTC-BTTBCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCCC
T ss_pred EEEEEEechhcCCceEEEEEcCCCC-CCCCCcCEEEEeCCCCCChhhhhcchhHHHHHhhCCeEEEEeCCcccccccccc
Confidence 45555554 5788999999999876 55678999999999765443211 1112345566799999999865442
Q ss_pred ------CChhhhhccccc--CCCCcH-hHHH-HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 449 ------LGRQWYENGKFL--KKKNTF-TDFI-ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 449 ------~g~~~~~~~~~~--~~~~~~-~D~~-~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
.|..|+...... .....+ +.+. +++.++.+... .++|++++|+||||++++.++.++|++|+++++.+|
T Consensus 94 ~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~ 172 (280)
T 3ls2_A 94 DSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFP-VTSTKAISGHSMGGHGALMIALKNPQDYVSASAFSP 172 (280)
T ss_dssp SCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHHSS-EEEEEEEEEBTHHHHHHHHHHHHSTTTCSCEEEESC
T ss_pred cccccccCCccccccccccccccccHHHHHHHHHHHHHHhhCC-CCCCeEEEEECHHHHHHHHHHHhCchhheEEEEecC
Confidence 223333221110 011122 2222 33445544433 358999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCcccc-cccCCCCCHHHHHHHHcCCccccCCCCC---CCeEEEeecCCCCccCCch-HHHHHHHH
Q 006375 519 FVDVLTTMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKAQN---YPHILVTAGLNDPRVMYSE-PAKFVAKL 593 (648)
Q Consensus 519 ~~d~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~~~~~~---~P~~li~~g~~D~~v~~~~-~~~~~~~l 593 (648)
.+++.... +....+ ..+|.. .+. +..++|...+++.+ .+|+||+||++|..|+... +++++++|
T Consensus 173 ~~~~~~~~------~~~~~~~~~~g~~--~~~---~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l 241 (280)
T 3ls2_A 173 IVNPINCP------WGVKAFTGYLGAD--KTT---WAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQNLVAVA 241 (280)
T ss_dssp CSCGGGSH------HHHHHHHHHHCSC--GGG---TGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCCCCCCHHHHHHHH
T ss_pred ccCcccCc------chhhHHHhhcCch--HHH---HHhcCHHHHHHhccccCCCcEEEEEeCCCcccCCchhHHHHHHHH
Confidence 88754311 000001 112221 111 13455655555443 2349999999999999854 89999999
Q ss_pred HhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 594 REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
++.+.+.++.+++ +++|... .....+.+.++|+.++|.
T Consensus 242 ~~~g~~~~~~~~~---g~~H~~~----~~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 242 KQKDYPLTLEMQT---GYDHSYF----FISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HHHTCCEEEEEET---TCCSSHH----HHHHHHHHHHHHHHHHHC
T ss_pred HHhCCCceEEEeC---CCCCchh----hHHHHHHHHHHHHHHHhc
Confidence 9999887766665 8899531 111224466899998875
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-19 Score=177.28 Aligned_cols=206 Identities=18% Similarity=0.192 Sum_probs=151.2
Q ss_pred CcceEEEEEeCC--CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCC
Q 006375 373 NYFTERKWASAS--DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG 450 (648)
Q Consensus 373 ~~~~~~~~~~s~--~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g 450 (648)
.+..+.+.+++. ++. ..+.+++|+.. .+++.|+||++||..+... .|......|+++||.|+++|+||.|...
T Consensus 22 ~~~~~~~~~~~~~~~~~-~~~~l~~p~~~--~~~~~p~vv~~HG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~g~g~~~ 96 (262)
T 1jfr_A 22 PYATSQTSVSSLVASGF-GGGTIYYPTST--ADGTFGAVVISPGFTAYQS--SIAWLGPRLASQGFVVFTIDTNTTLDQP 96 (262)
T ss_dssp SSCEEEEEECTTTCSSS-CCEEEEEESCC--TTCCEEEEEEECCTTCCGG--GTTTHHHHHHTTTCEEEEECCSSTTCCH
T ss_pred CCCccceEecceeccCC-CceeEEecCCC--CCCCCCEEEEeCCcCCCch--hHHHHHHHHHhCCCEEEEeCCCCCCCCC
Confidence 455666666665 333 24566777652 2456799999999765433 3566677888899999999999987653
Q ss_pred hhhhhcccccCCCCcHhHHHHHHHHHHH----cCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc
Q 006375 451 RQWYENGKFLKKKNTFTDFIACAEYLIK----NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM 526 (648)
Q Consensus 451 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~----~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~ 526 (648)
.. ...|+.++++++.+ ...++.++++++|+|+||.+++.++.++|+ ++++|+.+|+..
T Consensus 97 ~~------------~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~----- 158 (262)
T 1jfr_A 97 DS------------RGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT----- 158 (262)
T ss_dssp HH------------HHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS-----
T ss_pred ch------------hHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc-----
Confidence 32 23688999999987 345678899999999999999999999997 899998877432
Q ss_pred cCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCch-HHHHHHHHHhcCCCCCeEEE
Q 006375 527 LDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSE-PAKFVAKLREMKTDDNILLF 605 (648)
Q Consensus 527 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~-~~~~~~~l~~~~~~~~~~~~ 605 (648)
...+.++++| +|+++|++|..|++.+ +.++++++.. +.+.+++++
T Consensus 159 --------------------------------~~~~~~~~~P-~l~i~G~~D~~~~~~~~~~~~~~~l~~-~~~~~~~~~ 204 (262)
T 1jfr_A 159 --------------------------------DKTWPELRTP-TLVVGADGDTVAPVATHSKPFYESLPG-SLDKAYLEL 204 (262)
T ss_dssp --------------------------------CCCCTTCCSC-EEEEEETTCSSSCTTTTHHHHHHHSCT-TSCEEEEEE
T ss_pred --------------------------------cccccccCCC-EEEEecCccccCCchhhHHHHHHHhhc-CCCceEEEe
Confidence 1223445677 9999999999999998 9999999853 345555555
Q ss_pred EecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCC
Q 006375 606 KCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 606 ~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
+ ++||.......+.+ ...+.+||.++|+..
T Consensus 205 ~---~~~H~~~~~~~~~~--~~~i~~fl~~~l~~~ 234 (262)
T 1jfr_A 205 R---GASHFTPNTSDTTI--AKYSISWLKRFIDSD 234 (262)
T ss_dssp T---TCCTTGGGSCCHHH--HHHHHHHHHHHHSCC
T ss_pred C---CCCcCCcccchHHH--HHHHHHHHHHHhcCc
Confidence 4 88997654433322 235689999998754
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=186.89 Aligned_cols=246 Identities=15% Similarity=0.092 Sum_probs=159.5
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCC-C--CCchhHHHHHHCCCEEEEEccCCCCCC
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-P--AFNSSRLSLLDRGFIFAIAQIRGGGEL 449 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~-~--~~~~~~~~l~~~G~~v~~~~~rG~g~~ 449 (648)
.+..+.+.+.+.+|..+.+.++.|++. .++.|+||++|||...... . .|......|+++||+|+.+|+||+|++
T Consensus 79 ~~~~~~~~~~~~~g~~l~~~v~~p~~~---~~~~p~vv~iHGgg~~~g~~~~~~~~~~~~~la~~g~~vv~~d~r~~gg~ 155 (361)
T 1jkm_A 79 DVETSTETILGVDGNEITLHVFRPAGV---EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTA 155 (361)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEETTC---CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEET
T ss_pred CceeeeeeeecCCCCeEEEEEEeCCCC---CCCCeEEEEEcCCccccCCCcccchhHHHHHHHhCCCEEEEEecCCCCCC
Confidence 345677788888887899998888754 2367999999997522222 2 344556788889999999999998744
Q ss_pred ChhhhhcccccCCCCcHhHHHHHHHHHHHcC---CCCCCeEEEEeeChhHHHHHHHHhh-----CCCceeEEEecCCccc
Q 006375 450 GRQWYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNM-----RPDLFKAAVAAVPFVD 521 (648)
Q Consensus 450 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~-----~p~~~~a~v~~~~~~d 521 (648)
.. .......+.|+.++++|+.++- ..| +|+++|+|+||.+++.++.+ .|++++++|+.+|++|
T Consensus 156 ~~-------~~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~~ 226 (361)
T 1jkm_A 156 EG-------HHPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYIS 226 (361)
T ss_dssp TE-------ECCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCC
T ss_pred CC-------CCCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCccc
Confidence 21 1122346789999999998762 233 99999999999999999988 7889999999999988
Q ss_pred ccccccCCCCCCCcccccccCCC-CCHHHHHH-H------------HcCCcc----ccCCCCCCCeEEEeecCCCCccCC
Q 006375 522 VLTTMLDPTIPLTTAEWEEWGDP-WKEEFYFY-M------------KSYSPV----DNVKAQNYPHILVTAGLNDPRVMY 583 (648)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~-~------------~~~sp~----~~~~~~~~P~~li~~g~~D~~v~~ 583 (648)
................+.++..+ ........ + ...+|+ ..++. .||+||+||++|..++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~--l~P~Lii~G~~D~~~~- 303 (361)
T 1jkm_A 227 GGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRG--LPPFVVAVNELDPLRD- 303 (361)
T ss_dssp CCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTT--CCCEEEEEETTCTTHH-
T ss_pred cccccccccccccCcchhhccCcccCHHHHHHHHHHhCCCCCCCCCcccCccccChhhHcC--CCceEEEEcCcCcchh-
Confidence 62100000000000000000000 01111000 0 012343 12233 3359999999999988
Q ss_pred chHHHHHHHHHhcCCCCCeEEEEecCCCCccCC-Cc---hHHH-HHHHHHHHHHHHHhc
Q 006375 584 SEPAKFVAKLREMKTDDNILLFKCELGAGHFSK-SG---RFER-LREAAFTYTFLMRAL 637 (648)
Q Consensus 584 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~-~~---~~~~-~~~~~~~~~fl~~~l 637 (648)
++.+++++|++++.+.++++++ +++|... .. ..+. .+....+.+||.++.
T Consensus 304 -~~~~~~~~l~~~g~~~~l~~~~---g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 304 -EGIAFARRLARAGVDVAARVNI---GLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp -HHHHHHHHHHHTTCCEEEEEET---TCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHcCCCEEEEEeC---CCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 8999999999998887777665 8899654 11 1222 222345788998764
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=179.32 Aligned_cols=240 Identities=15% Similarity=0.139 Sum_probs=161.3
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 454 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 454 (648)
..+.+.++ .+|.+|.++++.|++ .+.|+||++||..+......|...+..|+++||.|+++|+||.|.......
T Consensus 21 ~~~~~~~~-~~g~~l~~~~~~p~~-----~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~ 94 (270)
T 3pfb_A 21 GMATITLE-RDGLQLVGTREEPFG-----EIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFE 94 (270)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECSS-----SSEEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCGG
T ss_pred cceEEEec-cCCEEEEEEEEcCCC-----CCCCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEccccccCCCCCCC
Confidence 34555555 688999999776653 347999999997765433335566678889999999999999887654322
Q ss_pred hcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCC----
Q 006375 455 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPT---- 530 (648)
Q Consensus 455 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~---- 530 (648)
. ..-....+|+.++++++.++.. .++++++|+|+||.+++.++.++|++++++|+.+|..+.........
T Consensus 95 ~----~~~~~~~~d~~~~i~~l~~~~~--~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~ 168 (270)
T 3pfb_A 95 N----MTVLNEIEDANAILNYVKTDPH--VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGV 168 (270)
T ss_dssp G----CCHHHHHHHHHHHHHHHHTCTT--EEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHHHTEETTE
T ss_pred c----cCHHHHHHhHHHHHHHHHhCcC--CCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhhhhhhhcc
Confidence 1 1111346889999999987633 36999999999999999999999999999999999876443211000
Q ss_pred --CCCCccccccc-CCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEe
Q 006375 531 --IPLTTAEWEEW-GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKC 607 (648)
Q Consensus 531 --~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (648)
.+........+ ...........+...++...+.++++| +|+++|++|..||+..+.++.+++. ..++++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~- 242 (270)
T 3pfb_A 169 TYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKP-VCLIHGTDDTVVSPNASKKYDQIYQ----NSTLHLIE- 242 (270)
T ss_dssp ECCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTTCCSC-EEEEEETTCSSSCTHHHHHHHHHCS----SEEEEEET-
T ss_pred ccCcccccccccccccccchhHhhcccccCHHHHHhhCCcc-EEEEEcCCCCCCCHHHHHHHHHhCC----CCeEEEcC-
Confidence 00000000001 111123334455666777778888898 9999999999999999888877754 23455554
Q ss_pred cCCCCccCCCchHHHHHHHHHHHHHHHHh
Q 006375 608 ELGAGHFSKSGRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 608 ~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 636 (648)
++||.......+.+.+ .+.+||.++
T Consensus 243 --~~gH~~~~~~~~~~~~--~i~~fl~~~ 267 (270)
T 3pfb_A 243 --GADHCFSDSYQKNAVN--LTTDFLQNN 267 (270)
T ss_dssp --TCCTTCCTHHHHHHHH--HHHHHHC--
T ss_pred --CCCcccCccchHHHHH--HHHHHHhhc
Confidence 8899775443333322 456777654
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-20 Score=184.21 Aligned_cols=241 Identities=15% Similarity=0.129 Sum_probs=156.4
Q ss_pred eEEEEEeC-CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCch---hHHHHHHCCCEEEEEccCCCCC---
Q 006375 376 TERKWASA-SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---SRLSLLDRGFIFAIAQIRGGGE--- 448 (648)
Q Consensus 376 ~~~~~~~s-~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~~~rG~g~--- 448 (648)
.+.+.+.+ .+|.++++.++.|++. ..+++.|+||++||+.+.... |.. ....+.++|++|+++|.|+.|.
T Consensus 17 ~~~~~~~s~~~g~~~~~~v~~P~~~-~~~~~~p~vv~lHG~~~~~~~--~~~~~~~~~~~~~~g~~vv~pd~~~~g~~~~ 93 (280)
T 3i6y_A 17 HKQYSHVSNTLNCAMRFAIYLPPQA-STGAKVPVLYWLSGLTCSDEN--FMQKAGAQRLAAELGIAIVAPDTSPRGEGVA 93 (280)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGG-GTTCCEEEEEEECCTTCCSSH--HHHHSCCHHHHHHHTCEEEEECSSCCSTTCC
T ss_pred EEEEEEeccccCCeeEEEEEeCCCC-CCCCCccEEEEecCCCCChhH--HhhcccHHHHHhhCCeEEEEeCCcccccccC
Confidence 45555544 5788999999999876 556789999999997665432 222 2345566799999999876542
Q ss_pred --------CChhhhhcccccC--CCCc-HhHHH-HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEec
Q 006375 449 --------LGRQWYENGKFLK--KKNT-FTDFI-ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 516 (648)
Q Consensus 449 --------~g~~~~~~~~~~~--~~~~-~~D~~-~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~ 516 (648)
.|..|+....... .... .+.+. +++.++.+...+ ++||+|+|+|+||++++.++.++|++|+++|+.
T Consensus 94 ~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 172 (280)
T 3i6y_A 94 DDEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVSAF 172 (280)
T ss_dssp CCSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEE
T ss_pred cccccccccCccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEEEe
Confidence 1122221111000 0012 22222 445555554434 789999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCCCcccc-cccCCCCCHHHHHHHHcCCccccCCCCC-CCeEEEeecCCCCccCCch-HHHHHHHH
Q 006375 517 VPFVDVLTTMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKAQN-YPHILVTAGLNDPRVMYSE-PAKFVAKL 593 (648)
Q Consensus 517 ~~~~d~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~~~~~~-~P~~li~~g~~D~~v~~~~-~~~~~~~l 593 (648)
+|.+++.... +....+ ..+|.. ... +..++|...+++.+ .+|+||+||++|+.|+... +++++++|
T Consensus 173 s~~~~~~~~~------~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~l 241 (280)
T 3i6y_A 173 SPINNPVNCP------WGQKAFTAYLGKD--TDT---WREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVLEAAA 241 (280)
T ss_dssp SCCCCGGGSH------HHHHHHHHHHCSC--GGG---TGGGCHHHHHHHCSSCCCEEEEEETTCTTHHHHTCHHHHHHHH
T ss_pred CCccccccCc------hHHHHHHHhcCCc--hHH---HHhcCHHHHHHhcCCCccEEEEEeCCCccccchhhHHHHHHHH
Confidence 9988754321 000011 112221 111 13456665555554 2349999999999998754 89999999
Q ss_pred HhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 594 REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
++.+.++++++++ +++|... .....+.+.++|+.++|.
T Consensus 242 ~~~g~~~~~~~~~---g~~H~~~----~~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 242 SSNNYPLELRSHE---GYDHSYY----FIASFIEDHLRFHSNYLN 279 (280)
T ss_dssp HHTTCCEEEEEET---TCCSSHH----HHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCceEEEeC---CCCccHH----HHHHhHHHHHHHHHhhcc
Confidence 9999887766665 8899531 111234466899998875
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=204.49 Aligned_cols=239 Identities=14% Similarity=0.089 Sum_probs=161.6
Q ss_pred eCCCCeE--EeEEEEEeeCccccCCCCcEEEEecC--CCCCC------------------C-------------------
Q 006375 382 SASDGTQ--IPICIVYRKNLVKLDGSDPLLLYGYG--SYEIC------------------N------------------- 420 (648)
Q Consensus 382 ~s~~g~~--i~~~l~~~~~~~~~~~~~P~vl~~hG--g~~~~------------------~------------------- 420 (648)
+..||++ |.+.++.|++. ++.|+||..|+ +.+.. .
T Consensus 179 ~~~DG~~d~L~a~l~~P~~~----~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 254 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKST----EKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKE 254 (763)
T ss_dssp TTCSSSCCEEEEEEEECCCS----SCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCC
T ss_pred cCCCCCeeeEEEEEEecCCC----CcccEEEecCCcCCCCcccccccccccccccccccCcccccccccccccccccccc
Confidence 4689999 99999999764 68999996654 21110 0
Q ss_pred -------CCCCc-----hhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc--C------
Q 006375 421 -------DPAFN-----SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN--C------ 480 (648)
Q Consensus 421 -------~~~~~-----~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--~------ 480 (648)
...|. .....|+++||+|+++|+||.|+++..+. .......+|+.++++||..+ +
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~~~-----~~~~~e~~D~~a~IdwL~~~~~~~~d~~~ 329 (763)
T 1lns_A 255 LPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQT-----SGDYQQIYSMTAVIDWLNGRARAYTSRKK 329 (763)
T ss_dssp CCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCC-----TTSHHHHHHHHHHHHHHTTSSCEESSTTC
T ss_pred ccccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCcCC-----CCCHHHHHHHHHHHHHHhhcccccccccc
Confidence 01121 12478999999999999999987654422 11124578999999999853 1
Q ss_pred ------CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCC-------CCCCCc------ccccc-
Q 006375 481 ------YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP-------TIPLTT------AEWEE- 540 (648)
Q Consensus 481 ------~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~-------~~~~~~------~~~~~- 540 (648)
..+.+||+++|+||||++++.+|.++|+.++|+|+.+|+.|+...+... ..+... ..+..
T Consensus 330 ~~~v~q~~~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~~~~ 409 (763)
T 1lns_A 330 THEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRN 409 (763)
T ss_dssp CCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGG
T ss_pred cccccccCCCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhhhHHhHHHHhhh
Confidence 1245799999999999999999999999999999999998754432111 011000 00000
Q ss_pred c-------------------------CCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHh
Q 006375 541 W-------------------------GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLRE 595 (648)
Q Consensus 541 ~-------------------------g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~ 595 (648)
+ ..+.. ..++...++..+++++++| +|++||.+|..||+.++.+++++++.
T Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~w~~~s~~~~l~~I~~P-vLii~G~~D~~vp~~~a~~l~~al~~ 485 (763)
T 1lns_A 410 LDGADFLKGNAEYEKRLAEMTAALDRKSGDY---NQFWHDRNYLINTDKVKAD-VLIVHGLQDWNVTPEQAYNFWKALPE 485 (763)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHCTTTCCC---CHHHHTTBGGGGGGGCCSE-EEEEEETTCCSSCTHHHHHHHHHSCT
T ss_pred cCcchhhhHHHHHHHHHHHHHhhhhhccCch---hHHhhccChhhHhhcCCCC-EEEEEECCCCCCChHHHHHHHHhhcc
Confidence 0 00000 1223456778888899998 99999999999999999999999987
Q ss_pred cCCCCCeEEEEecCCCCccCCCc-hHHHHHHHHHHHHHHHHhcCCC
Q 006375 596 MKTDDNILLFKCELGAGHFSKSG-RFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 596 ~~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
+.+..+ ++. ++||..... ....+ ...+.+||.++|+..
T Consensus 486 -~~~~~l-~i~---~~gH~~~~~~~~~~~--~~~i~~Ffd~~Lkg~ 524 (763)
T 1lns_A 486 -GHAKHA-FLH---RGAHIYMNSWQSIDF--SETINAYFVAKLLDR 524 (763)
T ss_dssp -TCCEEE-EEE---SCSSCCCTTBSSCCH--HHHHHHHHHHHHTTC
T ss_pred -CCCeEE-EEe---CCcccCccccchHHH--HHHHHHHHHHHhcCC
Confidence 555433 343 678965322 11112 235689999999754
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=181.58 Aligned_cols=193 Identities=17% Similarity=0.214 Sum_probs=146.6
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCC
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 463 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 463 (648)
.+|.. .+.+++|+.. .+.|+||++||..+... .|......|+++||.|+++|+||.|+....+
T Consensus 79 ~~g~~-~~~~~~p~~~----~~~p~vv~~HG~~~~~~--~~~~~~~~la~~G~~vv~~d~~g~g~s~~~~---------- 141 (306)
T 3vis_A 79 ADGFG-GGTIYYPREN----NTYGAIAISPGYTGTQS--SIAWLGERIASHGFVVIAIDTNTTLDQPDSR---------- 141 (306)
T ss_dssp CSSSC-CEEEEEESSC----SCEEEEEEECCTTCCHH--HHHHHHHHHHTTTEEEEEECCSSTTCCHHHH----------
T ss_pred cCCCc-ceEEEeeCCC----CCCCEEEEeCCCcCCHH--HHHHHHHHHHhCCCEEEEecCCCCCCCcchH----------
Confidence 45543 3566777664 26899999999654432 3556667888899999999999988754332
Q ss_pred CcHhHHHHHHHHHHHc------CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCccc
Q 006375 464 NTFTDFIACAEYLIKN------CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAE 537 (648)
Q Consensus 464 ~~~~D~~~~~~~l~~~------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~ 537 (648)
.+|+.++++++.+. ..+|+++|+++|+|+||.+++.++.++|+ ++++|+.+|+...
T Consensus 142 --~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~~--------------- 203 (306)
T 3vis_A 142 --ARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHLN--------------- 203 (306)
T ss_dssp --HHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCSC---------------
T ss_pred --HHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccCc---------------
Confidence 26899999999987 67889999999999999999999999997 8999988874330
Q ss_pred ccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCc-hHHHHHHHHHhcCCCCCeEEEEecCCCCccCC
Q 006375 538 WEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYS-EPAKFVAKLREMKTDDNILLFKCELGAGHFSK 616 (648)
Q Consensus 538 ~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~ 616 (648)
..+.+++.| +|+++|++|..||+. ++.+++++++..+ +.++++++ ++||+..
T Consensus 204 ----------------------~~~~~~~~P-~lii~G~~D~~~~~~~~~~~~~~~l~~~~-~~~~~~~~---g~gH~~~ 256 (306)
T 3vis_A 204 ----------------------KSWRDITVP-TLIIGAEYDTIASVTLHSKPFYNSIPSPT-DKAYLELD---GASHFAP 256 (306)
T ss_dssp ----------------------CCCTTCCSC-EEEEEETTCSSSCTTTTHHHHHHTCCTTS-CEEEEEET---TCCTTGG
T ss_pred ----------------------cccccCCCC-EEEEecCCCcccCcchhHHHHHHHhccCC-CceEEEEC---CCCccch
Confidence 123344567 999999999999998 7999999988765 55556664 8899765
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCC
Q 006375 617 SGRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 617 ~~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
....+.+. ..+.+||.++|+..
T Consensus 257 ~~~~~~~~--~~i~~fl~~~l~~~ 278 (306)
T 3vis_A 257 NITNKTIG--MYSVAWLKRFVDED 278 (306)
T ss_dssp GSCCHHHH--HHHHHHHHHHHSCC
T ss_pred hhchhHHH--HHHHHHHHHHccCc
Confidence 44333333 25689999998754
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-19 Score=182.42 Aligned_cols=249 Identities=13% Similarity=0.086 Sum_probs=165.3
Q ss_pred CCcceEEE-EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCC
Q 006375 372 NNYFTERK-WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG 450 (648)
Q Consensus 372 ~~~~~~~~-~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g 450 (648)
..+..+++ .+.+.||.+|.+.++.|.+ ++.|+||++||..+... .|...+..|+++||.|+++|+||.|...
T Consensus 30 ~~~~~~~~~~~~~~dg~~l~~~~~~p~~-----~~~p~vv~~HG~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G~G~S~ 102 (342)
T 3hju_A 30 QSIPYQDLPHLVNADGQYLFCRYWKPTG-----TPKALIFVSHGAGEHSG--RYEELARMLMGLDLLVFAHDHVGHGQSE 102 (342)
T ss_dssp TSCBTTSSCEEECTTSCEEEEEEECCSS-----CCSEEEEEECCTTCCGG--GGHHHHHHHHTTTEEEEEECCTTSTTSC
T ss_pred CCcccccCceEEccCCeEEEEEEeCCCC-----CCCcEEEEECCCCcccc--hHHHHHHHHHhCCCeEEEEcCCCCcCCC
Confidence 34444555 7788999999998776543 35799999999765433 4666777888889999999999988654
Q ss_pred hhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc---
Q 006375 451 RQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML--- 527 (648)
Q Consensus 451 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~--- 527 (648)
.... ....-....+|+.++++++..+ .+..+|+++|+|+||.+++.++.++|++++++|+.+|..+......
T Consensus 103 ~~~~---~~~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 177 (342)
T 3hju_A 103 GERM---VVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTF 177 (342)
T ss_dssp SSTT---CCSCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSHH
T ss_pred CcCC---CcCcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhHH
Confidence 3211 0111123468999999999876 4567999999999999999999999999999999999876432110
Q ss_pred -----------CCCCCCCcccccccCCCCCHHHHHHHHc---------------------CCccccCCCCCCCeEEEeec
Q 006375 528 -----------DPTIPLTTAEWEEWGDPWKEEFYFYMKS---------------------YSPVDNVKAQNYPHILVTAG 575 (648)
Q Consensus 528 -----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------------------~sp~~~~~~~~~P~~li~~g 575 (648)
.......... ..+- .........+.. .+....+.++++| +|+++|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-vlii~G 254 (342)
T 3hju_A 178 KVLAAKVLNLVLPNLSLGPID-SSVL-SRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVP-FLLLQG 254 (342)
T ss_dssp HHHHHHHHHHHCTTCBCCCCC-GGGS-CSCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGCCSC-EEEEEE
T ss_pred HHHHHHHHHHhccccccCccc-cccc-ccchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhCCcC-EEEEEe
Confidence 0000000000 0000 011111111110 0112446667888 999999
Q ss_pred CCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHH-HHHHHHHHHHhcCCC
Q 006375 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLRE-AAFTYTFLMRALSML 640 (648)
Q Consensus 576 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~-~~~~~~fl~~~l~~~ 640 (648)
++|..||+..+.++++.+... ..++++++ ++||.......+...+ +...++||.+++...
T Consensus 255 ~~D~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~gH~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (342)
T 3hju_A 255 SADRLCDSKGAYLLMELAKSQ--DKTLKIYE---GAYHVLHKELPEVTNSVFHEINMWVSQRTATA 315 (342)
T ss_dssp TTCSSSCHHHHHHHHHHCCCS--SEEEEEET---TCCSCGGGSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCcccChHHHHHHHHHcCCC--CceEEEEC---CCCchhhcCChHHHHHHHHHHHHHHhcccCCC
Confidence 999999998888888877532 34455554 8899876554443333 446789999998643
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-19 Score=169.10 Aligned_cols=207 Identities=13% Similarity=0.075 Sum_probs=150.0
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCC---CCCCCCchhHHHHHHCCCEEEEEccCCCCCCCh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI---CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~---~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 451 (648)
..+.+.+++.+| ++.++++.|++. ..++.|+||++||+... .....|......|+++||.|+++|+||.|....
T Consensus 9 ~~~~~~~~~~~g-~~~~~~~~p~~~--~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~ 85 (220)
T 2fuk_A 9 ESAALTLDGPVG-PLDVAVDLPEPD--VAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAG 85 (220)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTT--SCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCS
T ss_pred cceEEEEeCCCC-eEEEEEEeCCCC--CccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCCCCCCC
Confidence 467888999998 799998877642 11458999999995321 122224455678888899999999999886644
Q ss_pred hhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCC
Q 006375 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI 531 (648)
Q Consensus 452 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~ 531 (648)
.+ .......+|+.++++++..+. +.++++++|+|+||.+++.++.++ .++++|+.+|..+...
T Consensus 86 ~~------~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~~------- 148 (220)
T 2fuk_A 86 SF------DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD------- 148 (220)
T ss_dssp CC------CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC-------
T ss_pred Cc------ccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccchh-------
Confidence 32 112345799999999999874 667999999999999999999887 7999999998765421
Q ss_pred CCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCC
Q 006375 532 PLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 611 (648)
Q Consensus 532 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 611 (648)
+.. +.. ..| +|+++|++|..||+.++.++++++. ...++++++ ++
T Consensus 149 ------------------------~~~---~~~-~~p-~l~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~~~---~~ 193 (220)
T 2fuk_A 149 ------------------------FSD---VQP-PAQ-WLVIQGDADEIVDPQAVYDWLETLE---QQPTLVRMP---DT 193 (220)
T ss_dssp ------------------------CTT---CCC-CSS-EEEEEETTCSSSCHHHHHHHHTTCS---SCCEEEEET---TC
T ss_pred ------------------------hhh---ccc-CCc-EEEEECCCCcccCHHHHHHHHHHhC---cCCcEEEeC---CC
Confidence 011 111 356 9999999999999988888887764 245555554 88
Q ss_pred CccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 612 GHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 612 gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
||..... .+.+ ...+.+||.+.|..
T Consensus 194 ~H~~~~~-~~~~--~~~i~~~l~~~l~~ 218 (220)
T 2fuk_A 194 SHFFHRK-LIDL--RGALQHGVRRWLPA 218 (220)
T ss_dssp CTTCTTC-HHHH--HHHHHHHHGGGCSS
T ss_pred Cceehhh-HHHH--HHHHHHHHHHHhhc
Confidence 9976553 2222 22567899888763
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=171.97 Aligned_cols=216 Identities=14% Similarity=0.036 Sum_probs=147.3
Q ss_pred ceEEEEEeCC-CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCC-----chhHHHHHHC----CCEEEEEccC
Q 006375 375 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF-----NSSRLSLLDR----GFIFAIAQIR 444 (648)
Q Consensus 375 ~~~~~~~~s~-~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~-----~~~~~~l~~~----G~~v~~~~~r 444 (648)
..+.+.+.+. +|..+++.++.|++. ..+++.|+||++||+.+....+.. ......|+++ |++|+.+|+|
T Consensus 31 ~~~~~~~~s~~~~~~~~~~v~~P~~~-~~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~~d~~ 109 (268)
T 1jjf_A 31 QVVNISYFSTATNSTRPARVYLPPGY-SKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTN 109 (268)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTC-CTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCC
T ss_pred eEEEEEEeccccCCceEEEEEeCCCC-CCCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEEeCCC
Confidence 3556666654 678899999999875 445789999999997655433211 1124566665 5999999999
Q ss_pred CCCCC-ChhhhhcccccCCCCcHhH-HHHHHHHHHHcCCC--CCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 445 GGGEL-GRQWYENGKFLKKKNTFTD-FIACAEYLIKNCYC--TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 445 G~g~~-g~~~~~~~~~~~~~~~~~D-~~~~~~~l~~~~~~--d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
+.+.. ...|. ...+| +.++++++.++..+ |++||+++|+||||++++.++.++|++|+++|+.+|..
T Consensus 110 ~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~ 180 (268)
T 1jjf_A 110 AAGPGIADGYE---------NFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAP 180 (268)
T ss_dssp CCCTTCSCHHH---------HHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCT
T ss_pred CCCccccccHH---------HHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEeCCCC
Confidence 86531 11121 11233 44566777655444 89999999999999999999999999999999999976
Q ss_pred cccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCC
Q 006375 521 DVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 600 (648)
Q Consensus 521 d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~ 600 (648)
++.... ..+.... . . ...+.||+||+||++|..|| .+++++++|++++.+.
T Consensus 181 ~~~~~~------------~~~~~~~-~-~-------------~~~~~pp~li~~G~~D~~v~--~~~~~~~~l~~~g~~~ 231 (268)
T 1jjf_A 181 NTYPNE------------RLFPDGG-K-A-------------AREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINH 231 (268)
T ss_dssp TSCCHH------------HHCTTTT-H-H-------------HHHHCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCC
T ss_pred CCCchh------------hhcCcch-h-h-------------hhhcCceEEEEecCCCCCcc--HHHHHHHHHHHCCCce
Confidence 542110 1111110 0 0 11235679999999999988 4788999999999888
Q ss_pred CeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHh
Q 006375 601 NILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 601 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 636 (648)
++.+++ +++|.... ..+.+.+.+.||.++
T Consensus 232 ~~~~~~---g~~H~~~~----~~~~~~~~~~~l~~~ 260 (268)
T 1jjf_A 232 VYWLIQ---GGGHDFNV----WKPGLWNFLQMADEA 260 (268)
T ss_dssp EEEEET---TCCSSHHH----HHHHHHHHHHHHHHH
T ss_pred EEEEcC---CCCcCHhH----HHHHHHHHHHHHHhc
Confidence 777665 88996421 112344667888775
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.8e-19 Score=178.97 Aligned_cols=232 Identities=18% Similarity=0.139 Sum_probs=154.0
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCC-CCCCCchhHHHHH-HCCCEEEEEccCCCCCCChh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC-NDPAFNSSRLSLL-DRGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~-~~G~~v~~~~~rG~g~~g~~ 452 (648)
..+.+.+++.+| .++++++ + . .++.|+||++|||.... ....+......|+ ..||.|+.+|+||.|+...
T Consensus 55 ~~~~~~i~~~~g-~i~~~~y-~-~----~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~Vv~~dyrg~g~~~~- 126 (311)
T 1jji_A 55 RVEDRTIKGRNG-DIRVRVY-Q-Q----KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHKF- 126 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEE-E-S----SSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSCT-
T ss_pred eEEEEEecCCCC-cEEEEEE-c-C----CCCceEEEEECCcccccCChhHhHHHHHHHHHHhCCEEEEecCCCCCCCCC-
Confidence 478888888888 7999866 4 2 24579999999976322 2234555566777 5799999999999887532
Q ss_pred hhhcccccCCCCcHhHHHHHHHHHHHcC---CCCCCeEEEEeeChhHHHHHHHHhhCCCc----eeEEEecCCccccccc
Q 006375 453 WYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMRPDL----FKAAVAAVPFVDVLTT 525 (648)
Q Consensus 453 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----~~a~v~~~~~~d~~~~ 525 (648)
....+|+.++++|+.+.. .+|+++|+++|+|+||.+++.++.++|+. ++++|+.+|++|....
T Consensus 127 ----------p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~ 196 (311)
T 1jji_A 127 ----------PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAP 196 (311)
T ss_dssp ----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSC
T ss_pred ----------CCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCCC
Confidence 134689999999998752 36788999999999999999998887765 9999999999885321
Q ss_pred cc----CCCCC--CCccc----cccc-CCCCCHHHHHHHHcCCccc-cCCCCCCCeEEEeecCCCCccCCchHHHHHHHH
Q 006375 526 ML----DPTIP--LTTAE----WEEW-GDPWKEEFYFYMKSYSPVD-NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKL 593 (648)
Q Consensus 526 ~~----~~~~~--~~~~~----~~~~-g~~~~~~~~~~~~~~sp~~-~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l 593 (648)
.. ....+ +.... +..| +.+.+.. ....+|+. .++ ..||+||++|++|..++ ++.+++++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~~l~--~~~P~li~~G~~D~l~~--~~~~~~~~l 268 (311)
T 1jji_A 197 TPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKF----NPLASVIFADLE--NLPPALIITAEYDPLRD--EGEVFGQML 268 (311)
T ss_dssp CHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGG----CTTTSGGGSCCT--TCCCEEEEEEEECTTHH--HHHHHHHHH
T ss_pred CccHHHhcCCCccCCHHHHHHHHHHhCCCCccCC----CcccCccccccc--CCChheEEEcCcCcchH--HHHHHHHHH
Confidence 10 00000 00000 0011 1100000 01234543 122 34669999999999874 788999999
Q ss_pred HhcCCCCCeEEEEecCCCCccCCCc---hHHHHHHHHHHHHHHHH
Q 006375 594 REMKTDDNILLFKCELGAGHFSKSG---RFERLREAAFTYTFLMR 635 (648)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~ 635 (648)
++++.++++.+++ +++|..... .....+....+.+||.+
T Consensus 269 ~~~g~~~~~~~~~---g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 269 RRAGVEASIVRYR---GVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp HHTTCCEEEEEEE---EEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred HHcCCCEEEEEEC---CCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 9999888888887 778965321 12222223456778764
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=178.46 Aligned_cols=203 Identities=15% Similarity=0.203 Sum_probs=148.1
Q ss_pred EEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCC-CCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 378 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEI-CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 378 ~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~-~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
...++..++..+.+.++.|++ ++.|+||++|||+.. .....|......|+++||.|+++|+||+++....
T Consensus 40 ~~~i~~~~~~~~~~~~~~p~~-----~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~~~~~~~~~---- 110 (262)
T 2pbl_A 40 RLNLSYGEGDRHKFDLFLPEG-----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVRIS---- 110 (262)
T ss_dssp EEEEESSSSTTCEEEEECCSS-----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSCHH----
T ss_pred ccccccCCCCCceEEEEccCC-----CCCCEEEEEcCcccccCChHHHHHHHHHHHhCCCEEEEeCCCCCCCCChH----
Confidence 334444556566777666643 457999999997522 3334566667888899999999999998754321
Q ss_pred ccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC------CCceeEEEecCCcccccccccCCC
Q 006375 457 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR------PDLFKAAVAAVPFVDVLTTMLDPT 530 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~~~a~v~~~~~~d~~~~~~~~~ 530 (648)
...+|+.++++++..+.. ++++++|+||||.+++.++.++ |+.++++|+.+|+.|+...... .
T Consensus 111 -------~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~~~~~-~ 179 (262)
T 2pbl_A 111 -------EITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRT-S 179 (262)
T ss_dssp -------HHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGS-T
T ss_pred -------HHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchHHHhh-h
Confidence 235899999999988643 7999999999999999999887 8899999999998875432210 0
Q ss_pred CCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCC
Q 006375 531 IPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 610 (648)
Q Consensus 531 ~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 610 (648)
.. ..++ ...+ .+...+|...+.++++| +|+++|++|..|++.++.++++++. .++++++ +
T Consensus 180 ---~~---~~~~--~~~~---~~~~~~~~~~~~~~~~P-~lii~G~~D~~~~~~~~~~~~~~~~-----~~~~~~~---~ 239 (262)
T 2pbl_A 180 ---MN---EKFK--MDAD---AAIAESPVEMQNRYDAK-VTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAF---E 239 (262)
T ss_dssp ---TH---HHHC--CCHH---HHHHTCGGGCCCCCSCE-EEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEET---T
T ss_pred ---hh---hhhC--CCHH---HHHhcCcccccCCCCCC-EEEEEeCCCCcccHHHHHHHHHHhC-----CeEEEeC---C
Confidence 00 1111 1122 23567888888888887 9999999999999999999999987 4555664 8
Q ss_pred CCccCCCchH
Q 006375 611 AGHFSKSGRF 620 (648)
Q Consensus 611 ~gH~~~~~~~ 620 (648)
+||+......
T Consensus 240 ~~H~~~~~~~ 249 (262)
T 2pbl_A 240 KHHFNVIEPL 249 (262)
T ss_dssp CCTTTTTGGG
T ss_pred CCcchHHhhc
Confidence 8997755433
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=192.80 Aligned_cols=240 Identities=15% Similarity=0.164 Sum_probs=164.0
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCC----------------------chhHHHHH
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF----------------------NSSRLSLL 432 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~----------------------~~~~~~l~ 432 (648)
..+.+.+++.||.+|.+.++.|++. ++.|+||+.|| |+....+.+ ....+.|+
T Consensus 40 ~~~~v~i~~~DG~~L~a~l~~P~~~----~~~P~vl~~~p-yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la 114 (560)
T 3iii_A 40 MEKDGTVEMRDGEKLYINIFRPNKD----GKFPVVMSADT-YGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFWV 114 (560)
T ss_dssp EEEEEEEECTTSCEEEEEEEECSSS----SCEEEEEEEES-SCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHHG
T ss_pred EEEEEEEECCCCcEEEEEEEecCCC----CCCCEEEEecC-CCCCcccccccccccccccccccccccccccCCCHHHHH
Confidence 4678899999999999999998753 67999999987 333321111 12367899
Q ss_pred HCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeE
Q 006375 433 DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKA 512 (648)
Q Consensus 433 ~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a 512 (648)
++||+|+.+|+||.|+++..+.. ......+|+.++++||.++.++| .||+++|+|+||++++++|+++|+.++|
T Consensus 115 ~~Gy~vv~~D~RG~G~S~G~~~~-----~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~a 188 (560)
T 3iii_A 115 PNDYVVVKVALRGSDKSKGVLSP-----WSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKA 188 (560)
T ss_dssp GGTCEEEEEECTTSTTCCSCBCT-----TSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEE
T ss_pred hCCCEEEEEcCCCCCCCCCcccc-----CChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEE
Confidence 99999999999999988776542 22356799999999999988877 8999999999999999999999999999
Q ss_pred EEecCCcccccccccC-CCCCCCc--ccc-c----cc--------------CCCCCHHHHHHHHcCCccccCCCCCCCeE
Q 006375 513 AVAAVPFVDVLTTMLD-PTIPLTT--AEW-E----EW--------------GDPWKEEFYFYMKSYSPVDNVKAQNYPHI 570 (648)
Q Consensus 513 ~v~~~~~~d~~~~~~~-~~~~~~~--~~~-~----~~--------------g~~~~~~~~~~~~~~sp~~~~~~~~~P~~ 570 (648)
+|+.+|+.|+.+.... ...+... ..| . .| ..|.. -++++..++ ++.++++| +
T Consensus 189 iv~~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~---d~~W~~~~~--~~~~I~vP-v 262 (560)
T 3iii_A 189 MIPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLF---DDFWKQRQV--PLSQIKTP-L 262 (560)
T ss_dssp EEEESCCCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSS---CHHHHTTBC--CGGGCCSC-E
T ss_pred EEecCCcccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCc---chHhhccCC--chhhCCCC-E
Confidence 9999999997642111 0111000 000 0 01 11111 123455555 57788998 9
Q ss_pred EEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCC
Q 006375 571 LVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 571 li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
|+++|..|..+...++.+.+++|+..+ +.+.+. +.+|... .. ..+.....++||.++|+..
T Consensus 263 l~v~Gw~D~~~~~~g~l~~y~~l~~~~---k~l~ih---~~~~~~~--~~-~~~~~~~~~~wfD~~LkG~ 323 (560)
T 3iii_A 263 LTCASWSTQGLHNRGSFEGFKQAASEE---KWLYVH---GRKEWES--YY-ARENLERQKSFFDFYLKEE 323 (560)
T ss_dssp EEEEEGGGTTTTHHHHHHHHHHCCCSS---EEEEEE---SSCHHHH--HH-SHHHHHHHHHHHHHHTSCC
T ss_pred EEeCCcCCCcccchhHHHHHHhccccC---cEEEEC---CCCCcCc--cc-ChhHHHHHHHHHHHHhCCC
Confidence 999999997555667777777765432 223332 2233210 00 0122335689999999754
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-19 Score=175.21 Aligned_cols=246 Identities=15% Similarity=0.048 Sum_probs=153.2
Q ss_pred cceEEEEEeC-CCCeEEeEEEEEeeCccc----cCCCCcEEEEecCCCCCCCCCCCch--hHHHHHH-CCCEEEEEccCC
Q 006375 374 YFTERKWASA-SDGTQIPICIVYRKNLVK----LDGSDPLLLYGYGSYEICNDPAFNS--SRLSLLD-RGFIFAIAQIRG 445 (648)
Q Consensus 374 ~~~~~~~~~s-~~g~~i~~~l~~~~~~~~----~~~~~P~vl~~hGg~~~~~~~~~~~--~~~~l~~-~G~~v~~~~~rG 445 (648)
+..+.+.+.+ ..|.+++++++.|++. . .+++.|+||++||+.+.... |.. ....+++ .|++|+.+|+++
T Consensus 5 m~~~~~~~~s~~~~~~~~~~v~~P~~~-~~~~~~~~~~p~vv~~HG~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~ 81 (263)
T 2uz0_A 5 PAVMKIEYYSQVLDMEWGVNVLYPDAN-RVEEPECEDIPVLYLLHGMSGNHNS--WLKRTNVERLLRGTNLIVVMPNTSN 81 (263)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECC----------CCBCEEEEECCTTCCTTH--HHHHSCHHHHTTTCCCEEEECCCTT
T ss_pred ceEeEEEEechhhCCceeEEEEeCCCc-cccCCcCCCCCEEEEECCCCCCHHH--HHhccCHHHHHhcCCeEEEEECCCC
Confidence 4455666654 4678899999998764 2 24678999999997654432 333 2444544 699999999987
Q ss_pred CCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccc
Q 006375 446 GGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 525 (648)
Q Consensus 446 ~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~ 525 (648)
++...... +. .......+|+...++.+..+..+|+++++++|+|+||++++.++. +|++|+++|+.+|..++...
T Consensus 82 ~~~~~~~~---~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~~~~~~~~ 156 (263)
T 2uz0_A 82 GWYTDTQY---GF-DYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSGALSFQNF 156 (263)
T ss_dssp STTSBCTT---SC-BHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESCCCCSSSC
T ss_pred CccccCCC---cc-cHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecCCcchhhc
Confidence 65421110 00 000011244555555443323468899999999999999999998 89999999999999876541
Q ss_pred ccCCCCCCCcccc-cccCCCCCHHHHHHHHcCCccccCCCCCC-CeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeE
Q 006375 526 MLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKAQNY-PHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 603 (648)
Q Consensus 526 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~~~~~~~-P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 603 (648)
............+ ..++.+... .+..++|...+.++.- +|+|++||++|..|+ ++++++++|++.+.+.+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~~~~~~l~~~g~~~~~~ 230 (263)
T 2uz0_A 157 SPESQNLGSPAYWRGVFGEIRDW----TTSPYSLESLAKKSDKKTKLWAWCGEQDFLYE--ANNLAVKNLKKLGFDVTYS 230 (263)
T ss_dssp CGGGTTCSCHHHHHHHHCCCSCT----TTSTTSHHHHGGGCCSCSEEEEEEETTSTTHH--HHHHHHHHHHHTTCEEEEE
T ss_pred cccccccccchhHHHHcCChhhh----ccccCCHHHHHHhccCCCeEEEEeCCCchhhH--HHHHHHHHHHHCCCCeEEE
Confidence 1000000000001 112332111 1234566666665532 459999999999884 6789999999988776666
Q ss_pred EEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCCC
Q 006375 604 LFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLP 641 (648)
Q Consensus 604 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 641 (648)
+++ + +|.... ..+.....++||.++|..++
T Consensus 231 ~~~---g-~H~~~~----~~~~~~~~~~~l~~~l~~~~ 260 (263)
T 2uz0_A 231 HSA---G-THEWYY----WEKQLEVFLTTLPIDFKLEE 260 (263)
T ss_dssp EES---C-CSSHHH----HHHHHHHHHHHSSSCCCCCC
T ss_pred ECC---C-CcCHHH----HHHHHHHHHHHHHhhccchh
Confidence 554 7 995311 11234467899999998763
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-19 Score=176.83 Aligned_cols=215 Identities=14% Similarity=0.145 Sum_probs=137.9
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
+..+.||++||..++. ..|...+..|+++||.|+++|+||+|....+...... ..-++|+.+++++|...
T Consensus 49 G~~~~VlllHG~~~s~--~~~~~la~~La~~Gy~Via~Dl~GhG~S~~~~~~~~~----~~~~~d~~~~~~~l~~~---- 118 (281)
T 4fbl_A 49 GSRIGVLVSHGFTGSP--QSMRFLAEGFARAGYTVATPRLTGHGTTPAEMAASTA----SDWTADIVAAMRWLEER---- 118 (281)
T ss_dssp CSSEEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEECCCTTSSSCHHHHHTCCH----HHHHHHHHHHHHHHHHH----
T ss_pred CCCceEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEECCCCCCCCCccccCCCH----HHHHHHHHHHHHHHHhC----
Confidence 4456799999954433 3467778899999999999999999876443322111 12257888888888764
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc-----cCCCCCCCc---------ccccccCCCCCH-H
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-----LDPTIPLTT---------AEWEEWGDPWKE-E 548 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~-----~~~~~~~~~---------~~~~~~g~~~~~-~ 548 (648)
.+++.++|+||||.+++.++.++|++++++|+.+|.+.+.... .....+... ....+...+..+ .
T Consensus 119 ~~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (281)
T 4fbl_A 119 CDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVP 198 (281)
T ss_dssp CSEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSEEEGG
T ss_pred CCeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhccCchH
Confidence 3689999999999999999999999999999999876543211 000111000 000111111100 0
Q ss_pred HHHHHHcC--CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCc-hHHHHHH
Q 006375 549 FYFYMKSY--SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG-RFERLRE 625 (648)
Q Consensus 549 ~~~~~~~~--sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~ 625 (648)
....+... ..-..+.++++| +||+||++|..||+.++.++++++... +.++++++ ++||....+ ..+.+.
T Consensus 199 ~~~~~~~~~~~~~~~l~~i~~P-~Lii~G~~D~~v~~~~~~~l~~~l~~~--~~~l~~~~---~~gH~~~~e~~~e~v~- 271 (281)
T 4fbl_A 199 AIKHLITIGAVAEMLLPRVKCP-ALIIQSREDHVVPPHNGELIYNGIGST--EKELLWLE---NSYHVATLDNDKELIL- 271 (281)
T ss_dssp GHHHHHHHHHHHHHHGGGCCSC-EEEEEESSCSSSCTHHHHHHHHHCCCS--SEEEEEES---SCCSCGGGSTTHHHHH-
T ss_pred HHHHHHHhhhhccccccccCCC-EEEEEeCCCCCcCHHHHHHHHHhCCCC--CcEEEEEC---CCCCcCccccCHHHHH-
Confidence 00011000 011245667888 999999999999999999998887532 34556665 899975433 233222
Q ss_pred HHHHHHHHHHh
Q 006375 626 AAFTYTFLMRA 636 (648)
Q Consensus 626 ~~~~~~fl~~~ 636 (648)
..+.+||.+|
T Consensus 272 -~~i~~FL~~H 281 (281)
T 4fbl_A 272 -ERSLAFIRKH 281 (281)
T ss_dssp -HHHHHHHHTC
T ss_pred -HHHHHHHHhC
Confidence 2568999875
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-18 Score=168.94 Aligned_cols=233 Identities=14% Similarity=0.113 Sum_probs=148.4
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCC-CCCCc-hhHHHHHHCCCEEEEEccCCCCCCChhhh
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN-DPAFN-SSRLSLLDRGFIFAIAQIRGGGELGRQWY 454 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~-~~~~~-~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 454 (648)
++..+.+.||.++++.++.|+.. ++.|+||++||+..... ...|. .....|.+. |.|+++|+||+++....
T Consensus 4 ~~~~~~~~dg~~l~~~~~~p~~~----~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~~~~-- 76 (275)
T 3h04_A 4 IKYKVITKDAFALPYTIIKAKNQ----PTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEVSLD-- 76 (275)
T ss_dssp EEEEEECTTSCEEEEEEECCSSS----SCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTSCHH--
T ss_pred eEEEEecCCcEEEEEEEEccCCC----CCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCccccc--
Confidence 45677889999999997777542 46799999999763222 22233 334455555 99999999988765322
Q ss_pred hcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCC--
Q 006375 455 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP-- 532 (648)
Q Consensus 455 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~-- 532 (648)
..++|+.++++++.++ .+.+++.++|+|+||.+++.++.+ +.++++|+.+|+.++..........
T Consensus 77 ---------~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~~~~~~~~~~~ 143 (275)
T 3h04_A 77 ---------CIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINTEPFKTTNSYY 143 (275)
T ss_dssp ---------HHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCSHHHHSCCHHH
T ss_pred ---------hhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccccccccccchh
Confidence 2458999999999987 567899999999999999999998 6899999999988763221100000
Q ss_pred ------CCccccc------ccC-CCC--CHHHHHH----------HHc-------CC-ccccCCCCCCCeEEEeecCCCC
Q 006375 533 ------LTTAEWE------EWG-DPW--KEEFYFY----------MKS-------YS-PVDNVKAQNYPHILVTAGLNDP 579 (648)
Q Consensus 533 ------~~~~~~~------~~g-~~~--~~~~~~~----------~~~-------~s-p~~~~~~~~~P~~li~~g~~D~ 579 (648)
+...... ... .+. ....+.. +.. +. ....++++. | +|+++|++|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P-~lii~G~~D~ 221 (275)
T 3h04_A 144 AKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-P-VFIAHCNGDY 221 (275)
T ss_dssp HHHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-C-EEEEEETTCS
T ss_pred hcccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-C-EEEEecCCCC
Confidence 0000000 000 000 0000000 100 00 001123444 5 9999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHH-HHHHHHHHHHHHHhcC
Q 006375 580 RVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFER-LREAAFTYTFLMRALS 638 (648)
Q Consensus 580 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~-~~~~~~~~~fl~~~l~ 638 (648)
.||+.++.++++++.. .++++++ ++||......... .+....+.+||.++|.
T Consensus 222 ~~~~~~~~~~~~~~~~----~~~~~~~---~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 222 DVPVEESEHIMNHVPH----STFERVN---KNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp SSCTHHHHHHHTTCSS----EEEEEEC---SSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHhcCC----ceEEEeC---CCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 9999999888776643 2355555 8899765443321 2223467899999874
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=180.72 Aligned_cols=236 Identities=12% Similarity=0.115 Sum_probs=149.8
Q ss_pred EeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCC-CchhHHHHHHCCCEEEEEccC--CCCC---------
Q 006375 381 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQIR--GGGE--------- 448 (648)
Q Consensus 381 ~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~~r--G~g~--------- 448 (648)
.....|.++++.++.|++. . +++.|+||++||+.+....+. .......+.++|++|+++|.+ |.+.
T Consensus 28 ~s~~~~~~~~~~v~~P~~~-~-~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~~~~~~~~~G 105 (283)
T 4b6g_A 28 HAQTLQCEMKFAVYLPNNP-E-NRPLGVIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPNDDAYDLG 105 (283)
T ss_dssp EETTTTEEEEEEEEECCCT-T-CCCEEEEEEECCTTCCSHHHHHHSCTHHHHHHHTCEEEEECSSCCSTTSCCCSSTTSB
T ss_pred echhhCCceEEEEEeCCCC-C-CCCCCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEEecccccccccccccccccc
Confidence 3445688999999999875 3 567899999999765543221 112234556779999999964 4332
Q ss_pred CChhhhhcccccC--CCCcHhHH-H-HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccc
Q 006375 449 LGRQWYENGKFLK--KKNTFTDF-I-ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT 524 (648)
Q Consensus 449 ~g~~~~~~~~~~~--~~~~~~D~-~-~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~ 524 (648)
.|..|+....... ....+.++ . +.+.++.+. +.+++|++|+|+||||++++.++.++|++|+++++.+|++++..
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~~~~~~~ 184 (283)
T 4b6g_A 106 QSAGFYLNATEQPWAANYQMYDYILNELPRLIEKH-FPTNGKRSIMGHSMGGHGALVLALRNQERYQSVSAFSPILSPSL 184 (283)
T ss_dssp TTBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHH-SCEEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEEESCCCCGGG
T ss_pred CCCcccccCccCcccchhhHHHHHHHHHHHHHHHh-CCCCCCeEEEEEChhHHHHHHHHHhCCccceeEEEECCcccccc
Confidence 2222222111100 01122232 2 344444443 33578999999999999999999999999999999999887543
Q ss_pred cccCCCCCCCcccc-cccCCCCCHHHHHHHHcCCccccCCCC-CCCeEEEeecCCCCccCC-chHHHHHHHHHhcCCCCC
Q 006375 525 TMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNVKAQ-NYPHILVTAGLNDPRVMY-SEPAKFVAKLREMKTDDN 601 (648)
Q Consensus 525 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~~~~~-~~P~~li~~g~~D~~v~~-~~~~~~~~~l~~~~~~~~ 601 (648)
.. +....+ ..+|.. ... +..++|...+++. ..||+||+||+.|..|+. .++.+++++|++.+.+++
T Consensus 185 ~~------~~~~~~~~~~g~~--~~~---~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~~~~l~~~g~~~~ 253 (283)
T 4b6g_A 185 VP------WGEKAFTAYLGKD--REK---WQQYDANSLIQQGYKVQGMRIDQGLEDEFLPTQLRTEDFIETCRAANQPVD 253 (283)
T ss_dssp SH------HHHHHHHHHHCSC--GGG---GGGGCHHHHHHHTCCCSCCEEEEETTCTTHHHHTCHHHHHHHHHHHTCCCE
T ss_pred Cc------chhhhHHhhcCCc--hHH---HHhcCHHHHHHhcccCCCEEEEecCCCccCcchhhHHHHHHHHHHcCCCce
Confidence 11 000001 112221 111 1344555444443 233599999999999986 348999999999999988
Q ss_pred eEEEEecCCCCccCCCchHHHH-HHHHHHHHHHHHhcC
Q 006375 602 ILLFKCELGAGHFSKSGRFERL-REAAFTYTFLMRALS 638 (648)
Q Consensus 602 ~~~~~~~~~~gH~~~~~~~~~~-~~~~~~~~fl~~~l~ 638 (648)
+.+++ +++|.. ..+ ..+.+.+.|+.++|+
T Consensus 254 ~~~~~---g~~H~~-----~~~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 254 VRFHK---GYDHSY-----YFIASFIGEHIAYHAAFLK 283 (283)
T ss_dssp EEEET---TCCSSH-----HHHHHHHHHHHHHHHTTCC
T ss_pred EEEeC---CCCcCH-----hHHHHHHHHHHHHHHHhcC
Confidence 77775 789953 222 234467899988774
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.79 E-value=9.8e-19 Score=184.10 Aligned_cols=239 Identities=13% Similarity=0.072 Sum_probs=156.7
Q ss_pred cceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhh
Q 006375 374 YFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 453 (648)
Q Consensus 374 ~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~ 453 (648)
...+.+.++. +|.+|+++++.|++. ++.|+||++||..+... ..+......|+++||.|+++|+||.|+....
T Consensus 166 ~~~~~v~i~~-~g~~l~~~~~~P~~~----~~~P~vv~~hG~~~~~~-~~~~~~~~~l~~~G~~V~~~D~~G~G~s~~~- 238 (415)
T 3mve_A 166 YIIKQLEIPF-EKGKITAHLHLTNTD----KPHPVVIVSAGLDSLQT-DMWRLFRDHLAKHDIAMLTVDMPSVGYSSKY- 238 (415)
T ss_dssp SEEEEEEEEC-SSSEEEEEEEESCSS----SCEEEEEEECCTTSCGG-GGHHHHHHTTGGGTCEEEEECCTTSGGGTTS-
T ss_pred CCeEEEEEEE-CCEEEEEEEEecCCC----CCCCEEEEECCCCccHH-HHHHHHHHHHHhCCCEEEEECCCCCCCCCCC-
Confidence 3467788886 778899998888653 56899999999654322 2233334667789999999999998765321
Q ss_pred hhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc--CCCC
Q 006375 454 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML--DPTI 531 (648)
Q Consensus 454 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~--~~~~ 531 (648)
...........++++++.....+|+++|+++|+|+||++++.++..+|++++++|+.+|+++...... ....
T Consensus 239 ------~~~~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~ 312 (415)
T 3mve_A 239 ------PLTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQM 312 (415)
T ss_dssp ------CCCSCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHHHHTTS
T ss_pred ------CCCCCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHHHHHHh
Confidence 01111223446788888888878899999999999999999999989999999999999865321100 0011
Q ss_pred CCCcccc--cccCCC-CCH-HHHHHHHcCCcccc----CCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeE
Q 006375 532 PLTTAEW--EEWGDP-WKE-EFYFYMKSYSPVDN----VKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 603 (648)
Q Consensus 532 ~~~~~~~--~~~g~~-~~~-~~~~~~~~~sp~~~----~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 603 (648)
+...... ..+|.. ... .....+..+++... +.++++| +|+++|++|..||+.++.++++ ...+.+++
T Consensus 313 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-vLii~G~~D~~vp~~~~~~l~~----~~~~~~l~ 387 (415)
T 3mve_A 313 PKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVP-ILAMSLEGDPVSPYSDNQMVAF----FSTYGKAK 387 (415)
T ss_dssp CHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSC-EEEEEETTCSSSCHHHHHHHHH----TBTTCEEE
T ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccCCCCCC-EEEEEeCCCCCCCHHHHHHHHH----hCCCceEE
Confidence 1100000 112322 222 22233445555433 4567888 9999999999999988877665 44566677
Q ss_pred EEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 604 LFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 604 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
+++. ..+|. ..-+....+.+||.++|.
T Consensus 388 ~i~g--~~~h~------~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 388 KISS--KTITQ------GYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp EECC--CSHHH------HHHHHHHHHHHHHHHHHT
T ss_pred EecC--CCccc------chHHHHHHHHHHHHHHhc
Confidence 7762 12332 112234467899999874
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-18 Score=168.86 Aligned_cols=240 Identities=13% Similarity=0.096 Sum_probs=158.5
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 459 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 459 (648)
.+.+.+|.+|.+.++.|++ ++.|+||++||..+... .|......|+++||.|+++|+||.|....... ..
T Consensus 21 ~~~~~~g~~l~~~~~~~~~-----~~~~~vv~~hG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~---~~ 90 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPTG-----TPKALIFVSHGAGEHSG--RYEELARMLMGLDLLVFAHDHVGHGQSEGERM---VV 90 (303)
T ss_dssp EEECTTSCEEEEEEECCSS-----CCSEEEEEECCTTCCGG--GGHHHHHHHHHTTEEEEEECCTTSTTSCSSTT---CC
T ss_pred eEecCCCeEEEEEEeccCC-----CCCeEEEEECCCCchhh--HHHHHHHHHHhCCCcEEEeCCCCCCCCCCCCC---CC
Confidence 6778899999998665543 35799999999654433 46677788888999999999999887643211 00
Q ss_pred cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc-------------
Q 006375 460 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM------------- 526 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~------------- 526 (648)
..-....+|+.++++++..+ .+..++.++|+|+||.+++.++.++|++++++|+.+|..+.....
T Consensus 91 ~~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 168 (303)
T 3pe6_A 91 SDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLN 168 (303)
T ss_dssp SSTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHHHHHHH
Confidence 11123468888899988876 345799999999999999999999999999999999976542110
Q ss_pred -cCCCCCCCcccccccCCCCCHHHHHHHHc--------------------C-CccccCCCCCCCeEEEeecCCCCccCCc
Q 006375 527 -LDPTIPLTTAEWEEWGDPWKEEFYFYMKS--------------------Y-SPVDNVKAQNYPHILVTAGLNDPRVMYS 584 (648)
Q Consensus 527 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------------------~-sp~~~~~~~~~P~~li~~g~~D~~v~~~ 584 (648)
........... ..+-. ........+.. . .....+.++++| +|+++|++|..|++.
T Consensus 169 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~l~i~g~~D~~~~~~ 245 (303)
T 3pe6_A 169 SVLPNLSSGPID-SSVLS-RNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVP-FLLLQGSADRLCDSK 245 (303)
T ss_dssp TTCCSCCCCCCC-GGGTC-SCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGGCCSC-EEEEEETTCSSBCHH
T ss_pred HhcccccCCccc-hhhhh-cchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhcCCCC-EEEEeeCCCCCCChH
Confidence 00000000000 00000 11111111110 0 111345667888 999999999999998
Q ss_pred hHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHH-HHHHHHHHHHhcCC
Q 006375 585 EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLRE-AAFTYTFLMRALSM 639 (648)
Q Consensus 585 ~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~-~~~~~~fl~~~l~~ 639 (648)
.+.++++.+... ..++++++ ++||.......+...+ +...++||.+++..
T Consensus 246 ~~~~~~~~~~~~--~~~~~~~~---~~gH~~~~~~p~~~~~~~~~~~~~l~~~~~~ 296 (303)
T 3pe6_A 246 GAYLLMELAKSQ--DKTLKIYE---GAYHVLHKELPEVTNSVFHEINMWVSQRTAT 296 (303)
T ss_dssp HHHHHHHHCCCS--SEEEEEET---TCCSCGGGSCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHhcccC--CceEEEeC---CCccceeccchHHHHHHHHHHHHHHhccCCC
Confidence 888888877532 33445554 8899876555443333 44678999998864
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-18 Score=172.16 Aligned_cols=248 Identities=15% Similarity=0.086 Sum_probs=155.8
Q ss_pred ceEEEEEeCC-CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchh---HHHHHHCCCEEEEEccCCCCCCC
Q 006375 375 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSS---RLSLLDRGFIFAIAQIRGGGELG 450 (648)
Q Consensus 375 ~~~~~~~~s~-~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~---~~~l~~~G~~v~~~~~rG~g~~g 450 (648)
..+.+.+.|. .+.+++++ + |+.. ++.|+|+++||+.+......|... ...+.+.|++|+++|.++++.|.
T Consensus 8 ~v~~~~~~S~~~~~~i~v~-~-~p~~----~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~~~~ 81 (304)
T 1sfr_A 8 PVEYLQVPSPSMGRDIKVQ-F-QSGG----ANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYS 81 (304)
T ss_dssp CCEEEEEEETTTTEEEEEE-E-ECCS----TTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTC
T ss_pred eEEEEEEECccCCCceEEE-E-CCCC----CCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCcccc
Confidence 4566666665 46778877 4 4432 468999999997432222223322 24556679999999998764442
Q ss_pred hhhhhcccc--cCCCCcHhHHH--HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc
Q 006375 451 RQWYENGKF--LKKKNTFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM 526 (648)
Q Consensus 451 ~~~~~~~~~--~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~ 526 (648)
+|...... ......+++++ +++.++.++..+++++++|+|+||||++++.++.++|++|+++|+.+|.+++....
T Consensus 82 -~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~ 160 (304)
T 1sfr_A 82 -DWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAM 160 (304)
T ss_dssp -BCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTT
T ss_pred -ccCCccccccccccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCccccc
Confidence 22111000 00123444543 44555555334778899999999999999999999999999999999987653210
Q ss_pred cC--------CCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCC--CCCeEEEeecCCCC--------------ccC
Q 006375 527 LD--------PTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ--NYPHILVTAGLNDP--------------RVM 582 (648)
Q Consensus 527 ~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~--~~P~~li~~g~~D~--------------~v~ 582 (648)
.. ..-.+. .-..||.+... .+.+.+|..++.++ +-+|++|.||+.|+ +|+
T Consensus 161 ~~~~~~~~~~~~~~~~--~~~~~g~~~~~----~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~~ 234 (304)
T 1sfr_A 161 GPTLIGLAMGDAGGYK--ASDMWGPKEDP----AWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFV 234 (304)
T ss_dssp HHHHHHHHHHHTTSCC--HHHHHCSTTST----HHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHH
T ss_pred hhhhhhHhhhhccccc--hHHhcCCcchh----hhHhcCHHHHHHHhhhcCCeEEEEecCCCCccccccccccchhHHHH
Confidence 00 000000 01234554322 23567887665544 22359999999998 778
Q ss_pred CchHHHHHHHHHhcC-CCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCCCC
Q 006375 583 YSEPAKFVAKLREMK-TDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPS 642 (648)
Q Consensus 583 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 642 (648)
..++++++++|++.+ .+.+ +...++++|.. ....+.+.+.+.||.+.|+.++.
T Consensus 235 ~~~~~~~~~~L~~~G~~~v~---~~~~~~g~H~~----~~w~~~l~~~l~~l~~~l~~~~~ 288 (304)
T 1sfr_A 235 RTSNIKFQDAYNAGGGHNGV---FDFPDSGTHSW----EYWGAQLNAMKPDLQRALGATPN 288 (304)
T ss_dssp HHHHHHHHHHHHHTTCCSEE---EECCSCCCSSH----HHHHHHHHHTHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhCCCCceE---EEecCCCccCH----HHHHHHHHHHHHHHHHhcCCCcc
Confidence 899999999999998 7654 43333568842 11122344678999999997543
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=191.41 Aligned_cols=246 Identities=15% Similarity=0.145 Sum_probs=166.8
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCC--CCCchhH-HHHHHCCCEEEEEccCCCCCCChh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND--PAFNSSR-LSLLDRGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~--~~~~~~~-~~l~~~G~~v~~~~~rG~g~~g~~ 452 (648)
.+.+.+++.||.+|.+.++.|++. ++.|+||+.||. +.... ..|.... ..|+++||+|+.+|+||+|+++..
T Consensus 9 ~~~v~i~~~DG~~L~~~~~~P~~~----~~~P~vv~~~~~-g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G~S~g~ 83 (587)
T 3i2k_A 9 ASNVMVPMRDGVRLAVDLYRPDAD----GPVPVLLVRNPY-DKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGE 83 (587)
T ss_dssp EEEEEEECTTSCEEEEEEEEECCS----SCEEEEEEEESS-CTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTSTTCCSC
T ss_pred EEEEEEECCCCCEEEEEEEECCCC----CCeeEEEEECCc-CCCccccccchhhHHHHHHHCCCEEEEEcCCCCCCCCCc
Confidence 467899999999999998888753 578999998863 22211 1122234 789999999999999999988765
Q ss_pred hhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc-ccccccccCCCC
Q 006375 453 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF-VDVLTTMLDPTI 531 (648)
Q Consensus 453 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~-~d~~~~~~~~~~ 531 (648)
+.. .....+|+.++++||.++.+.+ .+|+++|+||||++++.++.++|+.++|+|+.++. .|+........-
T Consensus 84 ~~~------~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~~~~~~gG 156 (587)
T 3i2k_A 84 FVP------HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGG 156 (587)
T ss_dssp CCT------TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTC
T ss_pred ccc------ccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCcccccccceeecCC
Confidence 542 1357899999999999887665 89999999999999999999989999999999998 886643211111
Q ss_pred CCCc---ccc-c--------------------------------cc--CCC-------------------CCHHHHHHHH
Q 006375 532 PLTT---AEW-E--------------------------------EW--GDP-------------------WKEEFYFYMK 554 (648)
Q Consensus 532 ~~~~---~~~-~--------------------------------~~--g~~-------------------~~~~~~~~~~ 554 (648)
.+.. ..| . .| ..| ..+....+++
T Consensus 157 ~~~~~~~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yw~ 236 (587)
T 3i2k_A 157 ALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDESWQ 236 (587)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTTCCSCCHHHH
T ss_pred ccccchHHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhcCCCCChHHh
Confidence 1100 001 0 00 000 0000112456
Q ss_pred cCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC-----------chHHHH
Q 006375 555 SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS-----------GRFERL 623 (648)
Q Consensus 555 ~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~-----------~~~~~~ 623 (648)
..++...+++|++| +|+++|..|..++ .+.+++++|+..+. ..+++-+. .|+... ......
T Consensus 237 ~~s~~~~l~~I~vP-vL~v~Gw~D~~~~--~~~~~~~~l~~~~~-~~L~iGPw----~H~~~~~~~g~~~~g~~~~~~~~ 308 (587)
T 3i2k_A 237 SISLFERLGGLATP-ALITAGWYDGFVG--ESLRTFVAVKDNAD-ARLVVGPW----SHSNLTGRNADRKFGIAATYPIQ 308 (587)
T ss_dssp TTCCHHHHTTCCCC-EEEEEEEECTTHH--HHHHHHHHHTTTSC-EEEEEEEE----ETTBCSSEETTEECCGGGSCCHH
T ss_pred cCChhhhhccCCCC-EEEEccCCCccch--HHHHHHHHHhhcCC-CEEEECCc----cccCccccCCCcccCCccccccc
Confidence 66777788899999 9999999998753 57889999987664 23444332 243210 001111
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 006375 624 REAAFTYTFLMRALSMLP 641 (648)
Q Consensus 624 ~~~~~~~~fl~~~l~~~~ 641 (648)
+....+++||.++|+...
T Consensus 309 ~~~~~~~~wFD~~Lkg~~ 326 (587)
T 3i2k_A 309 EATTMHKAFFDRHLRGET 326 (587)
T ss_dssp HHHHHHHHHHHHHHSCCT
T ss_pred hhhHHHHHHHHHHhcCCC
Confidence 122457899999997543
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-19 Score=167.65 Aligned_cols=187 Identities=13% Similarity=0.107 Sum_probs=124.8
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHH---cC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK---NC 480 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~---~~ 480 (648)
+..|+||++||..+.. ..|...+..|...|+.|++||.+|.+.|+..+..... .....+++..+.++.+++ ..
T Consensus 20 ~a~~~Vv~lHG~G~~~--~~~~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~ 95 (210)
T 4h0c_A 20 RAKKAVVMLHGRGGTA--ADIISLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQ--QNQPALDSALALVGEVVAEIEAQ 95 (210)
T ss_dssp TCSEEEEEECCTTCCH--HHHHGGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGG--GGTTHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEEeCCCCCH--HHHHHHHHHhCCCCeEEEeecCCCCCccccccCCCcc--cchHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999933221 2233334455557999999999877655444332211 112334444444444332 23
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccc
Q 006375 481 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVD 560 (648)
Q Consensus 481 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~ 560 (648)
.+|++||+++|+|+||.+++.++.++|++|+++|+.+|.+-... . .. ....+
T Consensus 96 ~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~------~--------------~~------~~~~~-- 147 (210)
T 4h0c_A 96 GIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQE------L--------------AI------GNYKG-- 147 (210)
T ss_dssp TCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSS------C--------------CG------GGCCB--
T ss_pred CCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChh------h--------------hh------hhhhh--
Confidence 47999999999999999999999999999999999887532100 0 00 00000
Q ss_pred cCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 561 NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 561 ~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
...+.| +|++||++|++||+.++++++++|++++.+.++..|+ +.||... .+ ++.++.+||.
T Consensus 148 --~~~~~P-vl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~yp---g~gH~i~---~~---el~~i~~wL~ 209 (210)
T 4h0c_A 148 --DFKQTP-VFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVVYP---GRPHTIS---GD---EIQLVNNTIL 209 (210)
T ss_dssp --CCTTCE-EEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEEEEE---TCCSSCC---HH---HHHHHHHTTT
T ss_pred --hccCCc-eEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEEC---CCCCCcC---HH---HHHHHHHHHc
Confidence 011345 9999999999999999999999999999888777776 8899653 22 3334556664
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=176.88 Aligned_cols=253 Identities=15% Similarity=0.092 Sum_probs=155.0
Q ss_pred CCcceEEEEEeCCC--C--eEEeEEEEEeeCccccCCCCcEEEEecCCCCCC-CCCCCc-----hhHHHHH-HCCCEEEE
Q 006375 372 NNYFTERKWASASD--G--TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC-NDPAFN-----SSRLSLL-DRGFIFAI 440 (648)
Q Consensus 372 ~~~~~~~~~~~s~~--g--~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~-~~~~~~-----~~~~~l~-~~G~~v~~ 440 (648)
......++.|.+.| | ..+.++++.|++. .++.|+|++.||..+.. ..+++. .....|+ ++||+|++
T Consensus 39 ~~~~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~---~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~ 115 (377)
T 4ezi_A 39 YDLQLYKINYKTQSPDGNLTIASGLVAMPIHP---VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVM 115 (377)
T ss_dssp CCEEEEEEEEEEECTTSCEEEEEEEEEEESSC---SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEE
T ss_pred CCcEEEEEEEEEECCCCCEEEEEEEEEECCCC---CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEE
Confidence 34567788887766 4 4577999998763 36789999999965321 222211 2235677 99999999
Q ss_pred EccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHH-cCCCCCCeEEEEeeChhHHHHHHHHhhCC----C-ceeEEE
Q 006375 441 AQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK-NCYCTKEKLCIEGRSAGGLLIGAVLNMRP----D-LFKAAV 514 (648)
Q Consensus 441 ~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~d~~~i~i~G~S~GG~l~~~~~~~~p----~-~~~a~v 514 (648)
+|+||.|+.+...+.-.........+.|.+.++..+.. .+..+.++|+++|+|+||+++++++...| + .+++++
T Consensus 116 ~D~rG~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~~ 195 (377)
T 4ezi_A 116 PDYLGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAVA 195 (377)
T ss_dssp ECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEEE
T ss_pred eCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEEE
Confidence 99999997764111000000001223444444444433 35456799999999999999998887654 3 588999
Q ss_pred ecCCccccccccc--C-CCCCCC----------cccc-cccC------C------------------------C------
Q 006375 515 AAVPFVDVLTTML--D-PTIPLT----------TAEW-EEWG------D------------------------P------ 544 (648)
Q Consensus 515 ~~~~~~d~~~~~~--~-~~~~~~----------~~~~-~~~g------~------------------------~------ 544 (648)
+.++..|+..... + ...+.. ...+ .+|. + +
T Consensus 196 ~~~~p~dl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (377)
T 4ezi_A 196 PGSAPYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQALPQDPLLI 275 (377)
T ss_dssp EESCCCCHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHHHHSCSSGGGG
T ss_pred ecCcccCHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhhhccCCCHHHH
Confidence 9998888553210 0 000000 0000 0000 0 0
Q ss_pred ------------CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCC--
Q 006375 545 ------------WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG-- 610 (648)
Q Consensus 545 ------------~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-- 610 (648)
.++...+.+...+... .+++.| +||+||++|..||+.++.++++++++.+. .+++.++ +
T Consensus 276 ~~~~~~~~~~~~~~p~~~~~l~~~~~~~--~~~~~P-vli~hG~~D~~Vp~~~~~~l~~~l~~~G~-v~~~~~~---~~~ 348 (377)
T 4ezi_A 276 FQPKFSNGIISKTDRNTEILKINFNHYD--FKPTAP-LLLVGTKGDRDVPYAGAEMAYHSFRKYSD-FVWIKSV---SDA 348 (377)
T ss_dssp BCHHHHHHHHTTCSTTHHHHHHHHCCCC--SCCSSC-EEEEECTTCSSSCHHHHHHHHHHHHTTCS-CEEEEES---CSS
T ss_pred hchhhhhhcccccchHHHHHHHHhcccC--CCCCCC-EEEEecCCCCCCCHHHHHHHHHHHHhcCC-EEEEEcC---CCC
Confidence 0011111111111111 134677 99999999999999999999999999888 7777775 5
Q ss_pred CCccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 611 AGHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 611 ~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
.+|.... .....+.+.||.++++.
T Consensus 349 ~~H~~~~-----~~~~~~~~~wl~~~~~~ 372 (377)
T 4ezi_A 349 LDHVQAH-----PFVLKEQVDFFKQFERQ 372 (377)
T ss_dssp CCTTTTH-----HHHHHHHHHHHHHHHTS
T ss_pred CCccChH-----HHHHHHHHHHHHHhhcc
Confidence 6785421 22344678999999874
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.2e-18 Score=165.87 Aligned_cols=219 Identities=17% Similarity=0.211 Sum_probs=139.9
Q ss_pred EEEEE-eCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhh
Q 006375 377 ERKWA-SASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 455 (648)
Q Consensus 377 ~~~~~-~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 455 (648)
+.+.+ .+.+|.++......+++ .+.|+||++||+.+......+......++++||.|+++|+||.|........
T Consensus 12 ~~~~~~~~~~g~~l~~~~~~~~~-----~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~ 86 (270)
T 3llc_A 12 HAITVGQGSDARSIAALVRAPAQ-----DERPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGASGGAFRD 86 (270)
T ss_dssp EEEEESSGGGCEEEEEEEECCSS-----TTSCEEEEECCTTCCTTSHHHHHHHHHHHHHTCEEEEECCTTSTTCCSCGGG
T ss_pred ceEEEeeccCcceEEEEeccCCC-----CCCCeEEEECCCccccccchHHHHHHHHHhCCCcEEEeccccCCCCCCcccc
Confidence 44444 56788888766433221 2368999999976554333333345566688999999999999876543321
Q ss_pred cccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh---CC---CceeEEEecCCcccccccccCC
Q 006375 456 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM---RP---DLFKAAVAAVPFVDVLTTMLDP 529 (648)
Q Consensus 456 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~---~p---~~~~a~v~~~~~~d~~~~~~~~ 529 (648)
. .-....+|+.++++++ ..+++.++|+|+||.+++.++.+ +| +.++++|+.+|..++.......
T Consensus 87 ~----~~~~~~~d~~~~~~~l------~~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~~~~~~ 156 (270)
T 3llc_A 87 G----TISRWLEEALAVLDHF------KPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEP 156 (270)
T ss_dssp C----CHHHHHHHHHHHHHHH------CCSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHHHTTGG
T ss_pred c----cHHHHHHHHHHHHHHh------ccCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchhhhhhh
Confidence 1 0011234444444444 25799999999999999999999 99 8999999999987754422110
Q ss_pred CCCCC-cccc---------cccC-CC--CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhc
Q 006375 530 TIPLT-TAEW---------EEWG-DP--WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREM 596 (648)
Q Consensus 530 ~~~~~-~~~~---------~~~g-~~--~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~ 596 (648)
..... ...+ ..+. .+ .................+.++++| +|+++|++|..||+.++.++++.+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~v~~~~~~~~~~~~~~- 234 (270)
T 3llc_A 157 LLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCP-VHILQGMADPDVPYQHALKLVEHLPA- 234 (270)
T ss_dssp GCCHHHHHHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSC-EEEEEETTCSSSCHHHHHHHHHTSCS-
T ss_pred hhhhhhhhhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCC-EEEEecCCCCCCCHHHHHHHHHhcCC-
Confidence 11000 0000 1111 11 123333444555556677788898 99999999999999888888877754
Q ss_pred CCCCCeEEEEecCCCCccCC
Q 006375 597 KTDDNILLFKCELGAGHFSK 616 (648)
Q Consensus 597 ~~~~~~~~~~~~~~~gH~~~ 616 (648)
.+.++++++ ++||+..
T Consensus 235 -~~~~~~~~~---~~gH~~~ 250 (270)
T 3llc_A 235 -DDVVLTLVR---DGDHRLS 250 (270)
T ss_dssp -SSEEEEEET---TCCSSCC
T ss_pred -CCeeEEEeC---CCccccc
Confidence 124455554 8899643
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=166.68 Aligned_cols=240 Identities=14% Similarity=0.151 Sum_probs=151.1
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 454 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 454 (648)
..+.+.+++ +|..+.+.++..... +++.|+||++||..+... .|...+..|+++||.|+++|+||.|.....
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~p~vv~~hG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~-- 90 (315)
T 4f0j_A 19 PVHYLDFTS-QGQPLSMAYLDVAPK---KANGRTILLMHGKNFCAG--TWERTIDVLADAGYRVIAVDQVGFCKSSKP-- 90 (315)
T ss_dssp CCEEEEEEE-TTEEEEEEEEEECCS---SCCSCEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTSTTSCCC--
T ss_pred cceeEEEec-CCCCeeEEEeecCCC---CCCCCeEEEEcCCCCcch--HHHHHHHHHHHCCCeEEEeecCCCCCCCCC--
Confidence 456677764 566677765554432 356799999999765443 467777889999999999999998865321
Q ss_pred hcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCC--
Q 006375 455 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP-- 532 (648)
Q Consensus 455 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~-- 532 (648)
......++|+.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+..|..............
T Consensus 91 -----~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 163 (315)
T 4f0j_A 91 -----AHYQYSFQQLAANTHALLER--LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKALGVPWRSV 163 (315)
T ss_dssp -----SSCCCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCSSCHHHHTCCCCCH
T ss_pred -----CccccCHHHHHHHHHHHHHH--hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcccCCcccccchhhhh
Confidence 11245778888888887776 345699999999999999999999999999999998853211000000000
Q ss_pred ---------CCccc---c--ccc-CCCCC---HH-----------------------HHHHHHcCCccccCCCCCCCeEE
Q 006375 533 ---------LTTAE---W--EEW-GDPWK---EE-----------------------FYFYMKSYSPVDNVKAQNYPHIL 571 (648)
Q Consensus 533 ---------~~~~~---~--~~~-g~~~~---~~-----------------------~~~~~~~~sp~~~~~~~~~P~~l 571 (648)
..... + ..+ ..... .. ....+...+....+.++++| +|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P-~l 242 (315)
T 4f0j_A 164 DDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDRLQMP-TL 242 (315)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCCCGGGGGGCCSC-EE
T ss_pred HHHHhhcccCChHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccchhhhhcccCCCC-eE
Confidence 00000 0 000 00000 00 11112233445567778898 99
Q ss_pred EeecCCCCccCCchH------------HHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 572 VTAGLNDPRVMYSEP------------AKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 572 i~~g~~D~~v~~~~~------------~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
+++|++|..||..+. .+..+++.+.....++++++ ++||+......+.+.+ .+.+||.+
T Consensus 243 ii~G~~D~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~gH~~~~~~p~~~~~--~i~~fl~~ 313 (315)
T 4f0j_A 243 LLIGEKDNTAIGKDAAPAELKARLGNYAQLGKDAARRIPQATLVEFP---DLGHTPQIQAPERFHQ--ALLEGLQT 313 (315)
T ss_dssp EEEETTCCCCTTGGGSCHHHHTTSCCHHHHHHHHHHHSTTEEEEEET---TCCSCHHHHSHHHHHH--HHHHHHCC
T ss_pred EEEecCCCcCccccccccccccccccchhhhhHHHhhcCCceEEEeC---CCCcchhhhCHHHHHH--HHHHHhcc
Confidence 999999999996554 55566665555455555664 8899764443332322 35666643
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-18 Score=169.51 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=138.3
Q ss_pred EEEEEe---CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCC-chhHHHHHHCCCEEEEEccCCCCCCChh
Q 006375 377 ERKWAS---ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF-NSSRLSLLDRGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 377 ~~~~~~---s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~-~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 452 (648)
..+.+. +.+|.++.++++.|++. ..+.|+||++||+.+... .| ......+.++||.|+++|+|+.+..+..
T Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~P~~~---~~~~p~vv~lHG~~~~~~--~~~~~~~~~l~~~g~~v~~~d~~~~~~p~~~ 99 (304)
T 3d0k_A 25 NAIPYLDDDRNADRPFTLNTYRPYGY---TPDRPVVVVQHGVLRNGA--DYRDFWIPAADRHKLLIVAPTFSDEIWPGVE 99 (304)
T ss_dssp EEEEECC---CTTCCEEEEEEECTTC---CTTSCEEEEECCTTCCHH--HHHHHTHHHHHHHTCEEEEEECCTTTSCHHH
T ss_pred ceEEecccCCCCCceEEEEEEeCCCC---CCCCcEEEEeCCCCCCHH--HHHHHHHHHHHHCCcEEEEeCCccccCCCcc
Confidence 345555 67888899998888763 245799999999766542 23 3345667778999999999975322222
Q ss_pred hhhccc--c------cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC-ceeEEEecC-Ccccc
Q 006375 453 WYENGK--F------LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAV-PFVDV 522 (648)
Q Consensus 453 ~~~~~~--~------~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~~~a~v~~~-~~~d~ 522 (648)
|+..+. + ......++|+.++++++.++..+|+++|+++|+||||.+++.++.++|+ .++++|+.. |+.++
T Consensus 100 ~~~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~~~~~~~ 179 (304)
T 3d0k_A 100 SYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTL 179 (304)
T ss_dssp HTTTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEESCSSCCC
T ss_pred ccccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEecCccccc
Confidence 221111 0 0113456899999999998877899999999999999999999999995 688877554 66554
Q ss_pred cccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccC-----------------Cch
Q 006375 523 LTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVM-----------------YSE 585 (648)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~-----------------~~~ 585 (648)
.... . .| .+|.... ..+|.........| +|++||++|..+. ...
T Consensus 180 ~~~~----~-----~~-~~~~~~~--------~~~~~~~~~~~~~p-~li~~G~~D~~~~~p~~~~~~~~~~~~~~~~~~ 240 (304)
T 3d0k_A 180 PTFE----H-----RF-PEGLDGV--------GLTEDHLARLLAYP-MTILAGDQDIATDDPNLPSEPAALRQGPHRYAR 240 (304)
T ss_dssp SSTT----S-----BT-TTSSBTT--------TCCHHHHHHHHHSC-CEEEEETTCCCC--CCSCCSHHHHTTCSSHHHH
T ss_pred CCcc----c-----cC-ccccCCC--------CCCHHHHHhhhcCC-EEEEEeCCCCCccccccccChhhhccCccHHHH
Confidence 3211 0 00 1111100 01222222223456 9999999999752 234
Q ss_pred HHHHHHHHH----hcCCC--CCeEEEEecCCCCccC
Q 006375 586 PAKFVAKLR----EMKTD--DNILLFKCELGAGHFS 615 (648)
Q Consensus 586 ~~~~~~~l~----~~~~~--~~~~~~~~~~~~gH~~ 615 (648)
+.++++.++ +.+.+ .++++++ +.||..
T Consensus 241 ~~~~~~~l~~~a~~~g~~~~~~~~~~p---g~gH~~ 273 (304)
T 3d0k_A 241 ARHYYEAGQRAAAQRGLPFGWQLQVVP---GIGHDG 273 (304)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCEEEEET---TCCSCH
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEEeC---CCCCch
Confidence 667777776 66766 6666665 889964
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-19 Score=174.65 Aligned_cols=194 Identities=12% Similarity=0.075 Sum_probs=132.4
Q ss_pred CCCCcEEEEecCCCCCC---CCCCCchhHHHH----HHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHH
Q 006375 403 DGSDPLLLYGYGSYEIC---NDPAFNSSRLSL----LDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEY 475 (648)
Q Consensus 403 ~~~~P~vl~~hGg~~~~---~~~~~~~~~~~l----~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~ 475 (648)
.++.|+||++|||.... ....|...+..| +++||.|+++|+|++++.. ....++|+.+++++
T Consensus 38 ~~~~p~vv~lHGgg~~~g~~~~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~~-----------~~~~~~d~~~~~~~ 106 (273)
T 1vkh_A 38 QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEIT-----------NPRNLYDAVSNITR 106 (273)
T ss_dssp TTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSC-----------TTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCcccCCcCChHHHHHHHHHHhhhhccCCcEEEEeecccCCCCC-----------CCcHHHHHHHHHHH
Confidence 35689999999975432 233455556666 4789999999999876432 12356899999999
Q ss_pred HHHcCCCCCCeEEEEeeChhHHHHHHHHhhC-----------------CCceeEEEecCCcccccccccCCCCCCCcccc
Q 006375 476 LIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-----------------PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW 538 (648)
Q Consensus 476 l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-----------------p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 538 (648)
+.++ .++++++++|+||||.+++.++.++ |+.++++|+.+|+.++...... .+. ...+
T Consensus 107 l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~--~~~-~~~~ 181 (273)
T 1vkh_A 107 LVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIE--YPE-YDCF 181 (273)
T ss_dssp HHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHH--CGG-GHHH
T ss_pred HHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhh--ccc-HHHH
Confidence 9887 5778999999999999999999885 7889999999998876433210 000 0000
Q ss_pred --cccC-CCC-CHHHHHHHHcCCccc--cCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCC
Q 006375 539 --EEWG-DPW-KEEFYFYMKSYSPVD--NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 612 (648)
Q Consensus 539 --~~~g-~~~-~~~~~~~~~~~sp~~--~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g 612 (648)
..++ .+. ..+.. ...+|+. ....+.+| +||+||++|..||+.++++++++++..+.+.++++++ ++|
T Consensus 182 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~---~~g 254 (273)
T 1vkh_A 182 TRLAFPDGIQMYEEEP---SRVMPYVKKALSRFSID-MHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDD---LGL 254 (273)
T ss_dssp HHHHCTTCGGGCCCCH---HHHHHHHHHHHHHHTCE-EEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEEC---CCS
T ss_pred HHHHhcccccchhhcc---cccChhhhhcccccCCC-EEEEecCCcCCCChHHHHHHHHHHHhcCCceEEEEeC---CCc
Confidence 0111 110 00000 0111211 11124556 9999999999999999999999999988887777775 889
Q ss_pred ccCCCch
Q 006375 613 HFSKSGR 619 (648)
Q Consensus 613 H~~~~~~ 619 (648)
|......
T Consensus 255 H~~~~~~ 261 (273)
T 1vkh_A 255 HNDVYKN 261 (273)
T ss_dssp GGGGGGC
T ss_pred ccccccC
Confidence 9764433
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.4e-18 Score=160.15 Aligned_cols=184 Identities=13% Similarity=0.002 Sum_probs=126.4
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc--------ccc--cCCCCcHhHHHHHH
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN--------GKF--LKKKNTFTDFIACA 473 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~--------~~~--~~~~~~~~D~~~~~ 473 (648)
++.| ||++||..+... .|......|. .|+.|+.+|.++....+..|+.. +.. .......+++.+.+
T Consensus 15 ~~~p-vv~lHG~g~~~~--~~~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (209)
T 3og9_A 15 DLAP-LLLLHSTGGDEH--QLVEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTDEV 90 (209)
T ss_dssp TSCC-EEEECCTTCCTT--TTHHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHHHHHHHHHHHH
T ss_pred CCCC-EEEEeCCCCCHH--HHHHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHHHHHHHHHHHH
Confidence 4578 999999654433 3555555665 79999999966433334444430 000 00112345666667
Q ss_pred HHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHH
Q 006375 474 EYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYM 553 (648)
Q Consensus 474 ~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 553 (648)
+.+..+..+|+++++++|+||||.+++.++.++|+.++++|+.+|.......
T Consensus 91 ~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~---------------------------- 142 (209)
T 3og9_A 91 SLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDFE---------------------------- 142 (209)
T ss_dssp HHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCCC----------------------------
T ss_pred HHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCccc----------------------------
Confidence 7766666679999999999999999999999999999999999886532100
Q ss_pred HcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHH
Q 006375 554 KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 633 (648)
Q Consensus 554 ~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 633 (648)
.......+| +|++||++|+.||+.++++++++|++.+.+.++.++ ..||... .+ ...++.+||
T Consensus 143 ------~~~~~~~~p-~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~----~~gH~~~---~~---~~~~~~~~l 205 (209)
T 3og9_A 143 ------QTVQLDDKH-VFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYES----SLGHQLT---QE---EVLAAKKWL 205 (209)
T ss_dssp ------CCCCCTTCE-EEEEECTTCSSSCHHHHHHHHHHHHHTTCEEEEEEC----SSTTSCC---HH---HHHHHHHHH
T ss_pred ------ccccccCCC-EEEEcCCCCCccCHHHHHHHHHHHHHcCCceEEEEc----CCCCcCC---HH---HHHHHHHHH
Confidence 001223455 999999999999999999999999998876544443 3689763 22 233566888
Q ss_pred HHh
Q 006375 634 MRA 636 (648)
Q Consensus 634 ~~~ 636 (648)
.++
T Consensus 206 ~~~ 208 (209)
T 3og9_A 206 TET 208 (209)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=169.41 Aligned_cols=206 Identities=17% Similarity=0.103 Sum_probs=139.2
Q ss_pred CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHC--CCEEEEEccC---CCCCCChhhhhcccc
Q 006375 385 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR--GFIFAIAQIR---GGGELGRQWYENGKF 459 (648)
Q Consensus 385 ~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~~~r---G~g~~g~~~~~~~~~ 459 (648)
.+.+...+...|.. ++++.|+||++||..+.. ..|......|..+ ++.+++|+-+ ...+.|..|+.....
T Consensus 48 ~~~~~l~y~~~p~~---~~~~~plVI~LHG~G~~~--~~~~~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~ 122 (285)
T 4fhz_A 48 IMTRKLTFGRRGAA---PGEATSLVVFLHGYGADG--ADLLGLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWL 122 (285)
T ss_dssp CCCCCCCEEEEESC---TTCCSEEEEEECCTTBCH--HHHHTTHHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHH
T ss_pred cccccceeecCCCC---CCCCCcEEEEEcCCCCCH--HHHHHHHHHHHHhCCCeEEEecCCCcccccCCCcccccccccc
Confidence 33333334344443 456789999999943221 2233344556554 8899998743 233456677532111
Q ss_pred cCC---------CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCC
Q 006375 460 LKK---------KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPT 530 (648)
Q Consensus 460 ~~~---------~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~ 530 (648)
... ....+++.+.++.+.++..+|++||+++|+|+||.+++.++.++|+.|+++|+.++.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~-------- 194 (285)
T 4fhz_A 123 DGSSETAAAEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLA-------- 194 (285)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSC--------
T ss_pred cCcccchhhHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccC--------
Confidence 100 113456667777777776799999999999999999999999999999999988774311
Q ss_pred CCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCC
Q 006375 531 IPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 610 (648)
Q Consensus 531 ~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 610 (648)
++... . ..+.+.| +|++||++|++||+.++++++++|++++.+.++.+|+ +
T Consensus 195 ----------------~~~~~--~-------~~~~~~P-vl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~~~~~~y~---g 245 (285)
T 4fhz_A 195 ----------------PERLA--E-------EARSKPP-VLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHVMK---G 245 (285)
T ss_dssp ----------------HHHHH--H-------HCCCCCC-EEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEET---T
T ss_pred ----------------chhhh--h-------hhhhcCc-ccceeeCCCCCcCHHHHHHHHHHHHHCCCCEEEEEEC---C
Confidence 01100 0 0122455 9999999999999999999999999999887666664 8
Q ss_pred CCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 611 AGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 611 ~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
.||... .+ ++.++.+||.++|.
T Consensus 246 ~gH~i~---~~---~l~~~~~fL~~~Lp 267 (285)
T 4fhz_A 246 TGHGIA---PD---GLSVALAFLKERLP 267 (285)
T ss_dssp CCSSCC---HH---HHHHHHHHHHHHCC
T ss_pred CCCCCC---HH---HHHHHHHHHHHHCc
Confidence 899652 22 34467899999984
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=170.05 Aligned_cols=221 Identities=11% Similarity=0.055 Sum_probs=142.3
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCC-CCCCCchhHHHHHH-CCCEEEEEccCCCCCCChhhhhcccccCCCCcH
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEIC-NDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF 466 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~-~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~ 466 (648)
++++++.|++ ++.|+||++|||.... ....|......|+. .||.|+++|+||+++.... ..+
T Consensus 84 ~~~~~~~p~~-----~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~~~-----------~~~ 147 (326)
T 3d7r_A 84 MQVFRFNFRH-----QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFHID-----------DTF 147 (326)
T ss_dssp EEEEEEESTT-----CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSCHH-----------HHH
T ss_pred EEEEEEeeCC-----CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCCch-----------HHH
Confidence 5556565543 3569999999975432 22334444556664 5999999999997764321 246
Q ss_pred hHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCc----eeEEEecCCcccccccccCCCCCCCcccccccC
Q 006375 467 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL----FKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWG 542 (648)
Q Consensus 467 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g 542 (648)
+|+.+++++|.++ +++++|+++|+||||.+++.++.++|+. ++++|+.+|++|..... ... ........
T Consensus 148 ~d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~--~~~---~~~~~~~~ 220 (326)
T 3d7r_A 148 QAIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSN--KDI---SDALIEQD 220 (326)
T ss_dssp HHHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCC--TTC---CHHHHHHC
T ss_pred HHHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCC--hhH---HhhhcccC
Confidence 8999999999887 6789999999999999999999887766 99999999988754221 000 00000000
Q ss_pred CCCCHHHH----HHHH--------cCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCC
Q 006375 543 DPWKEEFY----FYMK--------SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 610 (648)
Q Consensus 543 ~~~~~~~~----~~~~--------~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 610 (648)
........ ..+. ..+|+...- ...||+||++|++|.. ..++.++++++++.+.+.++++++ +
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~P~lii~G~~D~~--~~~~~~~~~~l~~~~~~~~~~~~~---g 294 (326)
T 3d7r_A 221 AVLSQFGVNEIMKKWANGLPLTDKRISPINGTI-EGLPPVYMFGGGREMT--HPDMKLFEQMMLQHHQYIEFYDYP---K 294 (326)
T ss_dssp SSCCHHHHHHHHHHHHTTSCTTSTTTSGGGSCC-TTCCCEEEEEETTSTT--HHHHHHHHHHHHHTTCCEEEEEET---T
T ss_pred cccCHHHHHHHHHHhcCCCCCCCCeECcccCCc-ccCCCEEEEEeCcccc--hHHHHHHHHHHHHCCCcEEEEEeC---C
Confidence 00001100 0000 123433211 1345699999999964 457888999999988887777765 8
Q ss_pred CCccCCCc-hHHHHHHHHHHHHHHHHhcC
Q 006375 611 AGHFSKSG-RFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 611 ~gH~~~~~-~~~~~~~~~~~~~fl~~~l~ 638 (648)
++|..... ..+..+....+.+||.+++.
T Consensus 295 ~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 295 MVHDFPIYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp CCTTGGGSSSHHHHHHHHHHHHHHTSCCC
T ss_pred CcccccccCCHHHHHHHHHHHHHHHHHhh
Confidence 89975431 11222233467899988775
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=160.92 Aligned_cols=196 Identities=13% Similarity=0.070 Sum_probs=134.7
Q ss_pred EEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEcc-------------------CCCCCCChhh
Q 006375 393 IVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQI-------------------RGGGELGRQW 453 (648)
Q Consensus 393 l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~-------------------rG~g~~g~~~ 453 (648)
++.|+.. ++.|+||++||..+... .|......|+++||.|+++|. ||........
T Consensus 14 ~~~p~~~----~~~~~vv~lHG~~~~~~--~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~~~~~~~~ 87 (232)
T 1fj2_A 14 AIVPAAR----KATAAVIFLHGLGDTGH--GWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQED 87 (232)
T ss_dssp EEECCSS----CCSEEEEEECCSSSCHH--HHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBC
T ss_pred cccCCCC----CCCceEEEEecCCCccc--hHHHHHHHHhcCCcEEEecCCCccccccccccccccccccccCCcccccc
Confidence 4566543 56799999999765322 244444555667999999854 4431100000
Q ss_pred hhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCC
Q 006375 454 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPL 533 (648)
Q Consensus 454 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~ 533 (648)
. ..-....+|+.++++++.+ ..+|+++++++|+|+||.+++.++.++|+.++++|+.+|..+.....
T Consensus 88 ~-----~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~------- 154 (232)
T 1fj2_A 88 E-----SGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASF------- 154 (232)
T ss_dssp H-----HHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGS-------
T ss_pred c-----HHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCccc-------
Confidence 0 0001234666667777766 45788999999999999999999999999999999999976643221
Q ss_pred CcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCC--CCeEEEEecCCC
Q 006375 534 TTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD--DNILLFKCELGA 611 (648)
Q Consensus 534 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~ 611 (648)
+. ....+.++++| +|+++|++|..||+.++.++++++++.+.+ .++++++ ++
T Consensus 155 ----------~~------------~~~~~~~~~~P-~l~i~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~ 208 (232)
T 1fj2_A 155 ----------PQ------------GPIGGANRDIS-ILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYE---GM 208 (232)
T ss_dssp ----------CS------------SCCCSTTTTCC-EEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEET---TC
T ss_pred ----------cc------------cccccccCCCC-EEEEecCCCccCCHHHHHHHHHHHHHhCCCCceEEEEeC---CC
Confidence 00 01124455677 999999999999999999999999987754 5555554 88
Q ss_pred CccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 612 GHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 612 gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
||... .+. ...+.+||.++|..
T Consensus 209 ~H~~~---~~~---~~~i~~~l~~~l~~ 230 (232)
T 1fj2_A 209 MHSSC---QQE---MMDVKQFIDKLLPP 230 (232)
T ss_dssp CSSCC---HHH---HHHHHHHHHHHSCC
T ss_pred CcccC---HHH---HHHHHHHHHHhcCC
Confidence 99762 222 23568999999864
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=163.46 Aligned_cols=237 Identities=15% Similarity=0.142 Sum_probs=148.5
Q ss_pred ceEEEEEeCC-CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCch---hHHHHHHCCCEEEEEccCCCCCCC
Q 006375 375 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---SRLSLLDRGFIFAIAQIRGGGELG 450 (648)
Q Consensus 375 ~~~~~~~~s~-~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~~~rG~g~~g 450 (648)
..+.+.+.|. .|.+++++ +.|++ .|+||++||+.+......|.. ....+.++|++|+++|.++++.|.
T Consensus 10 ~~~~~~~~S~~~~~~~~~~-~~P~~-------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~~~~~ 81 (280)
T 1r88_A 10 PYENLMVPSPSMGRDIPVA-FLAGG-------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYT 81 (280)
T ss_dssp CCEEEEEEETTTTEEEEEE-EECCS-------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTSTTS
T ss_pred CEEEEEEECcccCCcceEE-EeCCC-------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCCCccC
Confidence 4567777765 68889988 66643 289999999743222222322 234566789999999997654431
Q ss_pred hhhhhcccccCCCCcHhHHH--HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccC
Q 006375 451 RQWYENGKFLKKKNTFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD 528 (648)
Q Consensus 451 ~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~ 528 (648)
.|.... . ..+.++. +++.++.++..+++++++|+|+||||++++.++.++|++|+++|+.+|.+++......
T Consensus 82 -~~~~~~---~--~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~ 155 (280)
T 1r88_A 82 -NWEQDG---S--KQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTN 155 (280)
T ss_dssp -BCSSCT---T--CBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHH
T ss_pred -CCCCCC---C--CcHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCCccch
Confidence 121110 0 1233322 3445555534478899999999999999999999999999999999998875321100
Q ss_pred CC--------CCCCcccccccCCCCCHHHHHHHHcCCccccCCCC--CCCeEEEee----cCCCCc-------cCCchHH
Q 006375 529 PT--------IPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ--NYPHILVTA----GLNDPR-------VMYSEPA 587 (648)
Q Consensus 529 ~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~--~~P~~li~~----g~~D~~-------v~~~~~~ 587 (648)
.. ..+. ....||.+... .+...+|+.++.+. +-+|++|.| |+.|.. |++.+++
T Consensus 156 ~~~~~~~~~~~~~~--~~~~~g~~~~~----~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~ 229 (280)
T 1r88_A 156 GAIAAGMQQFGGVD--TNGMWGAPQLG----RWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSR 229 (280)
T ss_dssp HHHHHHHHHHHCCC--THHHHCCGGGS----TTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHH
T ss_pred hhHHHHhhhccccc--hhhhcCCCchh----hhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHHHHHHH
Confidence 00 0000 00234544211 12456777666554 223599999 999984 6899999
Q ss_pred HHHHHHHhcC-CCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 588 KFVAKLREMK-TDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 588 ~~~~~l~~~~-~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
+++++|++.+ .+.+ +...++++|..... -..+.+.+.||.+.|.
T Consensus 230 ~~~~~L~~~g~~~~~---~~~~~~g~H~~~~w----~~~l~~~l~~~~~~~~ 274 (280)
T 1r88_A 230 MFYNQYRSVGGHNGH---FDFPASGDNGWGSW----APQLGAMSGDIVGAIR 274 (280)
T ss_dssp HHHHHHHHTTCCSEE---EECCSSCCSSHHHH----HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCcceE---EEecCCCCcChhHH----HHHHHHHHHHHHHHHh
Confidence 9999999988 7654 33333678943211 1223455777776653
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=160.48 Aligned_cols=216 Identities=13% Similarity=0.125 Sum_probs=139.8
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCC-ChhhhhcccccCCCCcHhHHHHHHHHHHHcCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGEL-GRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 482 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~-g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 482 (648)
++.|+||++||..+... .|......|+++||.|+++|+||.|.. +....... ......+|+.++++++..+
T Consensus 20 ~~~~~vv~~HG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~---~~~~~~~d~~~~i~~l~~~--- 91 (251)
T 3dkr_A 20 GTDTGVVLLHAYTGSPN--DMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTKG---NPDIWWAESSAAVAHMTAK--- 91 (251)
T ss_dssp CSSEEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEECCCTTCSSSCTHHHHHHC---CHHHHHHHHHHHHHHHHTT---
T ss_pred CCCceEEEeCCCCCCHH--HHHHHHHHHHHCCCEEEecCCCCCCCCChhhhcCcc---cHHHHHHHHHHHHHHHHHh---
Confidence 45689999999655443 466667888989999999999999876 33322210 1112357888899998876
Q ss_pred CCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccc-cccCCCCCHH--------HHHHH
Q 006375 483 TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW-EEWGDPWKEE--------FYFYM 553 (648)
Q Consensus 483 d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~-~~~g~~~~~~--------~~~~~ 553 (648)
.++++++|+|+||.+++.++.++|+.++++++.+|.............. ....+ ...+...... ....+
T Consensus 92 -~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (251)
T 3dkr_A 92 -YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLK-YAEYMNRLAGKSDESTQILAYLPGQLAAI 169 (251)
T ss_dssp -CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHHHH-HHHHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred -cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHHHH-HHHHHHhhcccCcchhhHHhhhHHHHHHH
Confidence 5799999999999999999999999999999999887632211000000 00000 0011100110 00011
Q ss_pred HcC--CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCch-HHHHHHHHHHH
Q 006375 554 KSY--SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGR-FERLREAAFTY 630 (648)
Q Consensus 554 ~~~--sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~ 630 (648)
... .+...+.++++| +|+++|++|..||+..+.++++++... .+.++++++ ++||...... .+.+ ...+.
T Consensus 170 ~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~gH~~~~~~~~~~~--~~~i~ 242 (251)
T 3dkr_A 170 DQFATTVAADLNLVKQP-TFIGQAGQDELVDGRLAYQLRDALINA-ARVDFHWYD---DAKHVITVNSAHHAL--EEDVI 242 (251)
T ss_dssp HHHHHHHHHTGGGCCSC-EEEEEETTCSSBCTTHHHHHHHHCTTC-SCEEEEEET---TCCSCTTTSTTHHHH--HHHHH
T ss_pred HHHHHHHhccccccCCC-EEEEecCCCcccChHHHHHHHHHhcCC-CCceEEEeC---CCCcccccccchhHH--HHHHH
Confidence 110 123455666888 999999999999999999999888763 333455554 8899765442 3322 22567
Q ss_pred HHHHHh
Q 006375 631 TFLMRA 636 (648)
Q Consensus 631 ~fl~~~ 636 (648)
+||.+.
T Consensus 243 ~fl~~~ 248 (251)
T 3dkr_A 243 AFMQQE 248 (251)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 888754
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-15 Score=152.61 Aligned_cols=234 Identities=12% Similarity=0.134 Sum_probs=152.7
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCC--------------
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEI-------------- 147 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~-------------- 147 (648)
..+.|||||++|||.....+.+..+||++|+++|+..... ... ...++||||| .|+|...+..
T Consensus 62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
T 2gop_A 62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAW 140 (347)
T ss_dssp EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC
T ss_pred CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccccee
Confidence 4789999999999998876445789999999998866432 233 5669999999 9999875310
Q ss_pred --------CCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccc------c-ccEEEEEECCCCCce
Q 006375 148 --------LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK------I-TRFVFYLDVSKPEEL 212 (648)
Q Consensus 148 --------~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~------~-~~~l~~~dl~~~~~~ 212 (648)
....+||++++.++ +....+... ....+.||||| +++.+... . ..+||++| +++ .
T Consensus 141 ~~g~~~~~~~~~~l~~~d~~~~--~~~~~l~~~---~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~ 210 (347)
T 2gop_A 141 FDDLGFFDGEKTTFWIFDTESE--EVIEEFEKP---RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK-E 210 (347)
T ss_dssp ---------CEEEEEEEETTTT--EEEEEEEEE---TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE-E
T ss_pred ecCcccccCccceEEEEECCCC--eEEeeecCC---CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc-e
Confidence 11367999999876 221222222 23367899999 55554332 2 56899999 554 6
Q ss_pred eEeeecccceeeeEeecCCEEEEEeccCC---CCCcEEEEEeCCCCCcceeEecCCCCcccce-EEEeCCEEEEEEecCC
Q 006375 213 RVLTPRVVGVDTAASHRGNHFFITRRSDE---LFNSELLACPVDNTSETTVLIPHRESVKLQD-IQLFIDHLAVYEREGG 288 (648)
Q Consensus 213 ~~l~~~~~~~~~~~s~dg~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 288 (648)
+.+... .....+||||++|++.++... ..+.+|+.+| + +..+.+++.. ...+.. +.+. +.+++....++
T Consensus 211 ~~l~~~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~-~~~~~~~~~~s-dg~~~~~~~~~ 283 (347)
T 2gop_A 211 EKMFEK--VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEV-DRGVGQAKIKD-GKVYFTLFEEG 283 (347)
T ss_dssp EEEEEE--ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTC-CSEEEEEEEET-TEEEEEEEETT
T ss_pred EEeccC--cceeeECCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccC-CcccCCccEEc-CcEEEEEecCC
Confidence 666654 223345999999999987531 2356899998 3 3333244332 233444 6666 66777777778
Q ss_pred eeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEE
Q 006375 289 LQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYD 351 (648)
Q Consensus 289 ~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d 351 (648)
..+|+ ++ + +.. . .+ ++. ...+..+.+++ .+++..++..+|.++|.++
T Consensus 284 ~~~l~-~~-~--g~~-~------~~-~~~-~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 284 SVNLY-IW-D--GEI-K------PI-AKG-RHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEE-EE-S--SSE-E------EE-ECS-SSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred cEEEE-Ec-C--Cce-E------EE-ecC-CCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 77777 66 3 431 1 11 111 11333333333 5889999999999999998
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-17 Score=151.77 Aligned_cols=194 Identities=14% Similarity=0.136 Sum_probs=136.9
Q ss_pred EEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCch--hHHHHHHCCCEEEEEccCCCCCC---Chh
Q 006375 378 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS--SRLSLLDRGFIFAIAQIRGGGEL---GRQ 452 (648)
Q Consensus 378 ~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~--~~~~l~~~G~~v~~~~~rG~g~~---g~~ 452 (648)
...++ .+|.++.++++.+++ +.|+||++||+.+... .|.. ....|+++||.|+.+|+||.|.. ...
T Consensus 6 ~~~~~-~~g~~l~~~~~~~~~------~~~~vv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~ 76 (207)
T 3bdi_A 6 EEFID-VNGTRVFQRKMVTDS------NRRSIALFHGYSFTSM--DWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKY 76 (207)
T ss_dssp EEEEE-ETTEEEEEEEECCTT------CCEEEEEECCTTCCGG--GGGGGTHHHHHHTTTEEEEEECCTTSTTSCCCTTT
T ss_pred eEEEe-eCCcEEEEEEEeccC------CCCeEEEECCCCCCcc--ccchHHHHHHHHhCCCeEEEEcCCcccccCcccCC
Confidence 33343 488899998776543 4689999999765443 4566 67888899999999999987754 211
Q ss_pred hhhcccccCCCC-cHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCC
Q 006375 453 WYENGKFLKKKN-TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI 531 (648)
Q Consensus 453 ~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~ 531 (648)
.... .++++.+.+..+++. .+.++++++|+|+||.++..++.++|++++++|+.+|.... .
T Consensus 77 --------~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~-~------- 138 (207)
T 3bdi_A 77 --------GIDRGDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVE-S------- 138 (207)
T ss_dssp --------CCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCG-G-------
T ss_pred --------CCCcchHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCcccc-c-------
Confidence 1122 678888888877765 34579999999999999999999999999999999886210 0
Q ss_pred CCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCC
Q 006375 532 PLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 611 (648)
Q Consensus 532 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 611 (648)
+ ...+.++++| +|+++|++|..+++..+.++.+.+. +.+.++++ ++
T Consensus 139 ---------~-----------------~~~~~~~~~p-~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~---~~ 184 (207)
T 3bdi_A 139 ---------L-----------------KGDMKKIRQK-TLLVWGSKDHVVPIALSKEYASIIS----GSRLEIVE---GS 184 (207)
T ss_dssp ---------G-----------------HHHHTTCCSC-EEEEEETTCTTTTHHHHHHHHHHST----TCEEEEET---TC
T ss_pred ---------h-----------------hHHHhhccCC-EEEEEECCCCccchHHHHHHHHhcC----CceEEEeC---CC
Confidence 0 1112344577 9999999999999988888877763 34455554 78
Q ss_pred CccCCCchHHHHHHHHHHHHHHH
Q 006375 612 GHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 612 gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
||.......+.+. ..+.+||.
T Consensus 185 ~H~~~~~~~~~~~--~~i~~fl~ 205 (207)
T 3bdi_A 185 GHPVYIEKPEEFV--RITVDFLR 205 (207)
T ss_dssp CSCHHHHSHHHHH--HHHHHHHH
T ss_pred CCCccccCHHHHH--HHHHHHHh
Confidence 9965332222222 23456664
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=160.25 Aligned_cols=204 Identities=17% Similarity=0.051 Sum_probs=142.2
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcc-------cccCCCCcHhHHHHHHHHHH
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG-------KFLKKKNTFTDFIACAEYLI 477 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~-------~~~~~~~~~~D~~~~~~~l~ 477 (648)
+.|+||++||..+... .|......|+++||.|+++|+||.|.....+.... ....-....+|+.++++++.
T Consensus 23 ~~~~vv~~hG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 100 (238)
T 1ufo_A 23 PKALLLALHGLQGSKE--HILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAE 100 (238)
T ss_dssp CCEEEEEECCTTCCHH--HHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCCcccch--HHHHHHHHHHhCCCEEEEecCCCCccCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999754432 24444556778899999999999886543221100 00001134578888999988
Q ss_pred HcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCC
Q 006375 478 KNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYS 557 (648)
Q Consensus 478 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~s 557 (648)
+.+. .+++++|+|+||.+++.++.++|+.++++++..|.... ... . . .+..| .....+..++
T Consensus 101 ~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~-~~~-~-~---------~~~~~---~~~~~~~~~~ 162 (238)
T 1ufo_A 101 RRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPM-KLP-Q-G---------QVVED---PGVLALYQAP 162 (238)
T ss_dssp HHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCC-CCC-T-T---------CCCCC---HHHHHHHHSC
T ss_pred hccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccc-hhh-h-h---------hccCC---cccchhhcCC
Confidence 7654 79999999999999999999999988888887764321 100 0 0 00112 1234556778
Q ss_pred ccccCCCC-CCCeEEEeecCCCCccCCchHHHHHHHHH-hcCC-CCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 558 PVDNVKAQ-NYPHILVTAGLNDPRVMYSEPAKFVAKLR-EMKT-DDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 558 p~~~~~~~-~~P~~li~~g~~D~~v~~~~~~~~~~~l~-~~~~-~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
+...+.++ ++| +|+++|++|..||+..+.++++++. ..+. +.++++++ ++||..... ....+.+||.
T Consensus 163 ~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~H~~~~~------~~~~~~~~l~ 232 (238)
T 1ufo_A 163 PATRGEAYGGVP-LLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEE---GAGHTLTPL------MARVGLAFLE 232 (238)
T ss_dssp GGGCGGGGTTCC-EEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEET---TCCSSCCHH------HHHHHHHHHH
T ss_pred hhhhhhhccCCc-EEEEECCCCCccCcHHHHHHHHHHhhcCCCCceEEEEeC---CCCcccHHH------HHHHHHHHHH
Confidence 88888887 787 9999999999999999999999998 7765 55555554 889976422 2224568888
Q ss_pred HhcC
Q 006375 635 RALS 638 (648)
Q Consensus 635 ~~l~ 638 (648)
++|+
T Consensus 233 ~~l~ 236 (238)
T 1ufo_A 233 HWLE 236 (238)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8774
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=165.45 Aligned_cols=215 Identities=12% Similarity=0.107 Sum_probs=138.8
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
+.|+||++||..+... .|...+..|+++||.|+++|+||.|......... .-....+|+.++++++..+ .
T Consensus 39 ~~~~vv~~HG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~----~~~~~~~d~~~~i~~l~~~----~ 108 (270)
T 3rm3_A 39 GPVGVLLVHGFTGTPH--SMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERT----TFHDWVASVEEGYGWLKQR----C 108 (270)
T ss_dssp SSEEEEEECCTTCCGG--GTHHHHHHHHHTTCEEEECCCTTCSSCHHHHHTC----CHHHHHHHHHHHHHHHHTT----C
T ss_pred CCeEEEEECCCCCChh--HHHHHHHHHHHCCCEEEEeCCCCCCCCccccccC----CHHHHHHHHHHHHHHHHhh----C
Confidence 3589999999665433 3667778889999999999999998765433211 1113357888888888865 5
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccC-CCCCCCcccccccCC----C---------CCHHHH
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD-PTIPLTTAEWEEWGD----P---------WKEEFY 550 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~-~~~~~~~~~~~~~g~----~---------~~~~~~ 550 (648)
.+++++|+|+||.+++.++.++|+ ++++|+.+|..++...... .........+..++. + .....+
T Consensus 109 ~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (270)
T 3rm3_A 109 QTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASL 187 (270)
T ss_dssp SEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCCCCCSEEEHHHH
T ss_pred CcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHhhcccccChhHH
Confidence 799999999999999999999999 9999999997764322100 000000000011100 0 001111
Q ss_pred HHHHc-C-CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchH-HHHHHHH
Q 006375 551 FYMKS-Y-SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRF-ERLREAA 627 (648)
Q Consensus 551 ~~~~~-~-sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~-~~~~~~~ 627 (648)
..+.. . .....+.++++| +|+++|++|..||+..+.++++++... +.++++++ ++||....... +.+ ..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~P-~lii~G~~D~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~gH~~~~~~~~~~~--~~ 259 (270)
T 3rm3_A 188 LQLARLMAQTKAKLDRIVCP-ALIFVSDEDHVVPPGNADIIFQGISST--EKEIVRLR---NSYHVATLDYDQPMI--IE 259 (270)
T ss_dssp HHHHHHHHHHHHTGGGCCSC-EEEEEETTCSSSCTTHHHHHHHHSCCS--SEEEEEES---SCCSCGGGSTTHHHH--HH
T ss_pred HHHHHHHHHHHhhhhhcCCC-EEEEECCCCcccCHHHHHHHHHhcCCC--cceEEEeC---CCCcccccCccHHHH--HH
Confidence 11100 0 122345666888 999999999999999999998887643 23455554 88997654432 222 23
Q ss_pred HHHHHHHHhcC
Q 006375 628 FTYTFLMRALS 638 (648)
Q Consensus 628 ~~~~fl~~~l~ 638 (648)
.+.+||.++.|
T Consensus 260 ~i~~fl~~~~~ 270 (270)
T 3rm3_A 260 RSLEFFAKHAG 270 (270)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHhcCC
Confidence 56789988753
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-17 Score=168.64 Aligned_cols=146 Identities=20% Similarity=0.187 Sum_probs=100.9
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccc--cCCCCcEEEEecCCCCCCCCCC----CchhHHHHHHCCCEEEEEccCCC
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVK--LDGSDPLLLYGYGSYEICNDPA----FNSSRLSLLDRGFIFAIAQIRGG 446 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~--~~~~~P~vl~~hGg~~~~~~~~----~~~~~~~l~~~G~~v~~~~~rG~ 446 (648)
.+..+...+++.||.++.++.+.|... . ..++.|+||++||..+....+. +...+..|+++||.|+++|+||.
T Consensus 24 ~~~~~~~~~~~~dG~~l~~~~~~~~~~-~~~~~~~~~~vvl~HG~~~~~~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G~ 102 (377)
T 1k8q_A 24 GYPAEEYEVVTEDGYILGIDRIPYGRK-NSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN 102 (377)
T ss_dssp TCCCEEEEEECTTSEEEEEEEECSCSS-CCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred CCCceEEEeEcCCCCEEEEEEecCCCC-CccccCCCCeEEEECCCCCchhhhhcCCCcccHHHHHHHCCCCEEEecCCCC
Confidence 455688889999999999886654331 1 1136799999999766543322 11223478889999999999998
Q ss_pred CCCChhhhhccccc-CCCCc----Hh-HHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC---ceeEEEecC
Q 006375 447 GELGRQWYENGKFL-KKKNT----FT-DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAV 517 (648)
Q Consensus 447 g~~g~~~~~~~~~~-~~~~~----~~-D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~~~a~v~~~ 517 (648)
|.....-....... ....+ .+ |+.++++++.++ .+.+++.++|+||||.+++.++.++|+ .++++|+.+
T Consensus 103 G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~~ 180 (377)
T 1k8q_A 103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALA 180 (377)
T ss_dssp TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEES
T ss_pred CCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHh--cCcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEeC
Confidence 86543100000000 00112 23 777788887765 234789999999999999999999998 799999999
Q ss_pred Cccc
Q 006375 518 PFVD 521 (648)
Q Consensus 518 ~~~d 521 (648)
|...
T Consensus 181 ~~~~ 184 (377)
T 1k8q_A 181 PVAT 184 (377)
T ss_dssp CCSC
T ss_pred Cchh
Confidence 8754
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=158.64 Aligned_cols=195 Identities=14% Similarity=0.142 Sum_probs=132.2
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHC-----CCEEEEEccCCC------CCCChhhhhcc-cccCC---CCcHhH
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-----GFIFAIAQIRGG------GELGRQWYENG-KFLKK---KNTFTD 468 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-----G~~v~~~~~rG~------g~~g~~~~~~~-~~~~~---~~~~~D 468 (648)
++.|+||++||..+... .|......|..+ |+.|++++.++. ++.+..|.... ..... ...+++
T Consensus 21 ~~~p~vv~lHG~g~~~~--~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 98 (239)
T 3u0v_A 21 RHSASLIFLHGSGDSGQ--GLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESIDV 98 (239)
T ss_dssp CCCEEEEEECCTTCCHH--HHHHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHHHH
T ss_pred CCCcEEEEEecCCCchh--hHHHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhHHH
Confidence 46799999999654322 244445566654 799999997642 33344454311 11111 123444
Q ss_pred HHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCC
Q 006375 469 FIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPW 545 (648)
Q Consensus 469 ~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~ 545 (648)
+...+..+++. ..+++++++++|+||||++++.++.++|+.++++|+.+|..+.....
T Consensus 99 ~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~------------------- 159 (239)
T 3u0v_A 99 MCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASAV------------------- 159 (239)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCHH-------------------
T ss_pred HHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhHH-------------------
Confidence 44444444432 34688999999999999999999999999999999999876532110
Q ss_pred CHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHH
Q 006375 546 KEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLRE 625 (648)
Q Consensus 546 ~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~ 625 (648)
...+. .....+||+|++||++|..||+.++.+++++|++.+.+.++++++ ++||... .+ .
T Consensus 160 ----~~~~~-------~~~~~~pp~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~---g~~H~~~---~~---~ 219 (239)
T 3u0v_A 160 ----YQALQ-------KSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFP---NVYHELS---KT---E 219 (239)
T ss_dssp ----HHHHH-------HCCSCCCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEET---TCCSSCC---HH---H
T ss_pred ----HHHHH-------hhccCCCCEEEEeeCCCCccCHHHHHHHHHHHHHcCCcEEEEEeC---CCCCcCC---HH---H
Confidence 01111 122356679999999999999999999999999988777666665 8899764 22 2
Q ss_pred HHHHHHHHHHhcCC
Q 006375 626 AAFTYTFLMRALSM 639 (648)
Q Consensus 626 ~~~~~~fl~~~l~~ 639 (648)
...+.+||.++|..
T Consensus 220 ~~~~~~~l~~~l~~ 233 (239)
T 3u0v_A 220 LDILKLWILTKLPG 233 (239)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhCCC
Confidence 34567999999864
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.3e-18 Score=175.92 Aligned_cols=147 Identities=16% Similarity=0.097 Sum_probs=110.4
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCC------------CCCc----hhHHHHHHCCC
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND------------PAFN----SSRLSLLDRGF 436 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~------------~~~~----~~~~~l~~~G~ 436 (648)
.+..+.+.+++.+|.+|+++++.|++. .++.|+||++||..+.... ..|. ..+..|+++||
T Consensus 84 g~~~e~v~~~~~~g~~l~~~l~~P~~~---~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G~ 160 (391)
T 3g8y_A 84 GYILEKWEFYPFPKSVSTFLVLKPEHL---KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGY 160 (391)
T ss_dssp TEEEEEEEECCSTTCCEEEEEEEETTC---CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTTC
T ss_pred CEEEEEEEEEcCCCCEEEEEEEeCCCC---CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCCC
Confidence 567788999999999999999998763 4678999999996443210 0112 45678899999
Q ss_pred EEEEEccCCCCCCChhhhhc--------cc----ccCCC----CcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHH
Q 006375 437 IFAIAQIRGGGELGRQWYEN--------GK----FLKKK----NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIG 500 (648)
Q Consensus 437 ~v~~~~~rG~g~~g~~~~~~--------~~----~~~~~----~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~ 500 (648)
+|+++|+||.|+.+..-... .. ...+. ..+.|+.++++||.++..+|++||+++|+||||++++
T Consensus 161 ~Vl~~D~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~al 240 (391)
T 3g8y_A 161 VAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMM 240 (391)
T ss_dssp EEEECCCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHHH
T ss_pred EEEEecCCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHHH
Confidence 99999999998765431100 00 00011 1237999999999999999999999999999999999
Q ss_pred HHHhhCCCceeEEEecCCccccc
Q 006375 501 AVLNMRPDLFKAAVAAVPFVDVL 523 (648)
Q Consensus 501 ~~~~~~p~~~~a~v~~~~~~d~~ 523 (648)
.++... +.++++|+.+++.++.
T Consensus 241 ~~a~~~-~~i~a~v~~~~~~~~~ 262 (391)
T 3g8y_A 241 VLGVLD-KDIYAFVYNDFLCQTQ 262 (391)
T ss_dssp HHHHHC-TTCCEEEEESCBCCHH
T ss_pred HHHHcC-CceeEEEEccCCCCcc
Confidence 888865 4789999888777653
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=170.85 Aligned_cols=146 Identities=12% Similarity=0.050 Sum_probs=109.7
Q ss_pred CCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCC------------CCCCc----hhHHHHHHCC
Q 006375 372 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN------------DPAFN----SSRLSLLDRG 435 (648)
Q Consensus 372 ~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~------------~~~~~----~~~~~l~~~G 435 (648)
..+..+.+.+++.+|.+++++++.|++. .++.|+||++||+.+... ...|. ..+..|+++|
T Consensus 88 ~g~~~e~v~~~~~~g~~l~~~l~~P~~~---~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~G 164 (398)
T 3nuz_A 88 EGYRLEKWEFYPLPKCVSTFLVLIPDNI---NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEG 164 (398)
T ss_dssp SSEEEEEEEECCSTTBCEEEEEEEESSC---CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTTT
T ss_pred CCEEEEEEEEEcCCCcEEEEEEEeCCCC---CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHCC
Confidence 3567889999999999999999998763 367899999999755321 11222 4567899999
Q ss_pred CEEEEEccCCCCCCChhhhhcc-c-----------ccCCC----CcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHH
Q 006375 436 FIFAIAQIRGGGELGRQWYENG-K-----------FLKKK----NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 499 (648)
Q Consensus 436 ~~v~~~~~rG~g~~g~~~~~~~-~-----------~~~~~----~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~ 499 (648)
|+|+++|+||.|+.+....... . ...+. ..+.|+.++++||.++..+|++||+|+|+||||+++
T Consensus 165 y~Vl~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~a 244 (398)
T 3nuz_A 165 YIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPM 244 (398)
T ss_dssp CEEEEECCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHHH
T ss_pred CEEEEecCCCCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHHH
Confidence 9999999999987654321000 0 00011 134799999999999988999999999999999999
Q ss_pred HHHHhhCCCceeEEEecCCccc
Q 006375 500 GAVLNMRPDLFKAAVAAVPFVD 521 (648)
Q Consensus 500 ~~~~~~~p~~~~a~v~~~~~~d 521 (648)
+.++...+ .++|+|+.+++..
T Consensus 245 ~~~aa~~~-~i~a~v~~~~~~~ 265 (398)
T 3nuz_A 245 MVLGTLDT-SIYAFVYNDFLCQ 265 (398)
T ss_dssp HHHHHHCT-TCCEEEEESCBCC
T ss_pred HHHHhcCC-cEEEEEEeccccc
Confidence 98888755 6888888665544
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=161.80 Aligned_cols=184 Identities=18% Similarity=0.153 Sum_probs=127.8
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEE--ccCCCCCCChhhhhccc-ccC----CCCcHhHHHHHHHHH
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIA--QIRGGGELGRQWYENGK-FLK----KKNTFTDFIACAEYL 476 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~--~~rG~g~~g~~~~~~~~-~~~----~~~~~~D~~~~~~~l 476 (648)
++.|+||++||+.+... .|......|++ +|.|+++ |+||.|+++ |..... ... .....+|+.++++++
T Consensus 60 ~~~p~vv~~HG~~~~~~--~~~~~~~~l~~-~~~v~~~~~d~~g~g~s~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGDEN--QFFDFGARLLP-QATILSPVGDVSEHGAAR--FFRRTGEGVYDMVDLERATGKMADFIKAN 134 (251)
T ss_dssp TTSCEEEEECCTTCCHH--HHHHHHHHHST-TSEEEEECCSEEETTEEE--SSCBCGGGCBCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHh--HHHHHHHhcCC-CceEEEecCCcCCCCCcc--cccCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 45799999999765432 34444555554 6999999 788877432 221100 000 012357777888887
Q ss_pred HHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcC
Q 006375 477 IKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSY 556 (648)
Q Consensus 477 ~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 556 (648)
.++. +.++++++|+|+||++++.++.++|++++++|+.+|..+...
T Consensus 135 ~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~-------------------------------- 180 (251)
T 2r8b_A 135 REHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP-------------------------------- 180 (251)
T ss_dssp HHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC--------------------------------
T ss_pred Hhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc--------------------------------
Confidence 7653 678999999999999999999999999999999999764311
Q ss_pred CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHh
Q 006375 557 SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 557 sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 636 (648)
......+++| +|+++|++|..||+.++.++++++++++.+.++ .++ ++||.... + ....+.+||.++
T Consensus 181 --~~~~~~~~~P-~li~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~gH~~~~---~---~~~~~~~~l~~~ 247 (251)
T 2r8b_A 181 --KISPAKPTRR-VLITAGERDPICPVQLTKALEESLKAQGGTVET-VWH---PGGHEIRS---G---EIDAVRGFLAAY 247 (251)
T ss_dssp --CCCCCCTTCE-EEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEE-EEE---SSCSSCCH---H---HHHHHHHHHGGG
T ss_pred --cccccccCCc-EEEeccCCCccCCHHHHHHHHHHHHHcCCeEEE-Eec---CCCCccCH---H---HHHHHHHHHHHh
Confidence 0011223566 999999999999999999999999987655432 343 67997632 2 223567899998
Q ss_pred cCC
Q 006375 637 LSM 639 (648)
Q Consensus 637 l~~ 639 (648)
|+.
T Consensus 248 l~~ 250 (251)
T 2r8b_A 248 GGG 250 (251)
T ss_dssp C--
T ss_pred cCC
Confidence 874
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=168.19 Aligned_cols=149 Identities=13% Similarity=0.082 Sum_probs=100.0
Q ss_pred cceEEEEEeCCC--C--eEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCC---------CCCchhHHHHHHCCCEEEE
Q 006375 374 YFTERKWASASD--G--TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND---------PAFNSSRLSLLDRGFIFAI 440 (648)
Q Consensus 374 ~~~~~~~~~s~~--g--~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~---------~~~~~~~~~l~~~G~~v~~ 440 (648)
....++.|.+.+ | ..+.++++.|+.. ...++.|+||++||+.+.... ..+...+..|+++||.|++
T Consensus 44 v~~~~i~y~t~~~~g~~~~~~g~l~~P~~~-~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~V~~ 122 (397)
T 3h2g_A 44 VRVAEFTYATIGVEGEPATASGVLLIPGGE-RCSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVG 122 (397)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEEECT-TCCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCEEEE
T ss_pred eEEEEEEEEecCCCCCeEEEEEEEEeCCCC-CCCCCCcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCEEEE
Confidence 345666666554 4 4688999999875 445778999999997765432 2255667788899999999
Q ss_pred EccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc-CCCCCCeEEEEeeChhHHHHHHHHhh-CC----C-ceeEE
Q 006375 441 AQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN-CYCTKEKLCIEGRSAGGLLIGAVLNM-RP----D-LFKAA 513 (648)
Q Consensus 441 ~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~-~p----~-~~~a~ 513 (648)
+|+||.|+.+...............+.|.+.++..+.++ +..++++|+++|+||||.+++.++.. .+ + .+.++
T Consensus 123 ~D~~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~~~ 202 (397)
T 3h2g_A 123 SDYLGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVAS 202 (397)
T ss_dssp ECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEEEE
T ss_pred ecCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceEEE
Confidence 999999876422110000000012345566666655544 55567899999999999998877622 22 2 57888
Q ss_pred EecCCccccc
Q 006375 514 VAAVPFVDVL 523 (648)
Q Consensus 514 v~~~~~~d~~ 523 (648)
++.++..|+.
T Consensus 203 ~~~~~~~~l~ 212 (397)
T 3h2g_A 203 APISGPYALE 212 (397)
T ss_dssp EEESCCSSHH
T ss_pred ecccccccHH
Confidence 8888877764
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=155.77 Aligned_cols=190 Identities=16% Similarity=0.087 Sum_probs=129.9
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHH--CCCEEEEEccCC------CCCCChhhhhc-cccc---CCCC----cHh
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLD--RGFIFAIAQIRG------GGELGRQWYEN-GKFL---KKKN----TFT 467 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~--~G~~v~~~~~rG------~g~~g~~~~~~-~~~~---~~~~----~~~ 467 (648)
++.|+||++||..+... .|......|++ +||.|+++|.+| +|..+..|++. +... .... ..+
T Consensus 12 ~~~~~vv~~HG~~~~~~--~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~~~~~ 89 (218)
T 1auo_A 12 PADACVIWLHGLGADRY--DFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAK 89 (218)
T ss_dssp CCSEEEEEECCTTCCTT--TTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHHH
T ss_pred CCCcEEEEEecCCCChh--hHHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCcccccchHHHHHHHH
Confidence 56799999999765433 36666778887 899999998774 22222223211 1100 0111 234
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHh-hCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCC
Q 006375 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN-MRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWK 546 (648)
Q Consensus 468 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~-~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~ 546 (648)
|+.+.++++.+ ..+++++++++|+|+||.+++.++. ++|++++++|+.+|..+. . ..+ .+
T Consensus 90 ~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~-~-----~~~------~~------ 150 (218)
T 1auo_A 90 MVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPT-F-----GDE------LE------ 150 (218)
T ss_dssp HHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTT-C-----CTT------CC------
T ss_pred HHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCC-c-----hhh------hh------
Confidence 55555555554 3468899999999999999999999 999999999999998664 0 110 00
Q ss_pred HHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHH
Q 006375 547 EEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREA 626 (648)
Q Consensus 547 ~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~ 626 (648)
+. ..++++| +|+++|++|..||+.++++++++++..+.+.+++++ + +||..... ..
T Consensus 151 ---------~~----~~~~~~P-~l~i~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~---~-~gH~~~~~------~~ 206 (218)
T 1auo_A 151 ---------LS----ASQQRIP-ALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEY---P-MGHEVLPQ------EI 206 (218)
T ss_dssp ---------CC----HHHHTCC-EEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEE---S-CSSSCCHH------HH
T ss_pred ---------hh----hcccCCC-EEEEEeCCCceecHHHHHHHHHHHHhCCCceEEEEe---c-CCCccCHH------HH
Confidence 00 1233566 999999999999999999999999988776655555 3 78975322 22
Q ss_pred HHHHHHHHHhcC
Q 006375 627 AFTYTFLMRALS 638 (648)
Q Consensus 627 ~~~~~fl~~~l~ 638 (648)
..+.+||.++|+
T Consensus 207 ~~~~~~l~~~l~ 218 (218)
T 1auo_A 207 HDIGAWLAARLG 218 (218)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 356789988764
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=146.74 Aligned_cols=173 Identities=13% Similarity=0.048 Sum_probs=120.3
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
++.|+||++||..+....+.+......|+++||.|+.+|+||.|..... .......+++.++++++.+.. +
T Consensus 2 ~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~-------~~~~~~~~~~~~~~~~~~~~~--~ 72 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDL-------GQLGDVRGRLQRLLEIARAAT--E 72 (176)
T ss_dssp CSSCEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEECCCCHHHHTCGGG-------CTTCCHHHHHHHHHHHHHHHH--T
T ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHHhcC--C
Confidence 3578999999976544333333556788889999999999987654211 112223455566777777654 3
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCC
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVK 563 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~ 563 (648)
.++++++|+|+||.+++.++.++| ++++|+.+|..+.... . .+.
T Consensus 73 ~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~-------------~---------------------~~~ 116 (176)
T 2qjw_A 73 KGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPL-------------P---------------------ALD 116 (176)
T ss_dssp TSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTB-------------C---------------------CCC
T ss_pred CCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCcccc-------------C---------------------ccc
Confidence 579999999999999999999988 9999999887654211 0 044
Q ss_pred CCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 564 AQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 564 ~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
++++| +|+++|++|..||+.++.++++.+ +.+++++ ++||..... .+.+. ..+.+||.
T Consensus 117 ~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~----~~~H~~~~~-~~~~~--~~i~~fl~ 174 (176)
T 2qjw_A 117 AAAVP-ISIVHAWHDELIPAADVIAWAQAR-----SARLLLV----DDGHRLGAH-VQAAS--RAFAELLQ 174 (176)
T ss_dssp CCSSC-EEEEEETTCSSSCHHHHHHHHHHH-----TCEEEEE----SSCTTCTTC-HHHHH--HHHHHHHH
T ss_pred ccCCC-EEEEEcCCCCccCHHHHHHHHHhC-----CceEEEe----CCCcccccc-HHHHH--HHHHHHHH
Confidence 55677 999999999999999999998887 2344444 468976422 22222 23456664
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.5e-17 Score=154.77 Aligned_cols=184 Identities=17% Similarity=0.134 Sum_probs=127.8
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhccccc-----CCCCcHhHHHHHHHHHHHcC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL-----KKKNTFTDFIACAEYLIKNC 480 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~-----~~~~~~~D~~~~~~~l~~~~ 480 (648)
.|+||++||..+... .|......|. .||.|+++|.++....|..|....... .-....+|+.+.++++.++.
T Consensus 30 ~p~vv~lHG~g~~~~--~~~~~~~~l~-~~~~vv~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 106 (223)
T 3b5e_A 30 RECLFLLHGSGVDET--TLVPLARRIA-PTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEAAKRH 106 (223)
T ss_dssp CCEEEEECCTTBCTT--TTHHHHHHHC-TTSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCCCCHH--HHHHHHHhcC-CCceEEEeCCCCCcCCccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 499999999765433 3555555665 499999999876433255554321100 00123466777777777664
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccc
Q 006375 481 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVD 560 (648)
Q Consensus 481 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~ 560 (648)
.+++++++++|+|+||.+++.++.++|++++++|+.+|...... + .
T Consensus 107 ~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~-------------------~---------------~ 152 (223)
T 3b5e_A 107 GLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH-------------------V---------------P 152 (223)
T ss_dssp TCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS-------------------C---------------C
T ss_pred CCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCccc-------------------c---------------c
Confidence 57889999999999999999999999999999999998653210 0 0
Q ss_pred cCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 561 NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 561 ~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
.....++| +|++||++|..||+.+++ +++++++.+.+.+++++ + +||.... + ....+.+||.+.+.
T Consensus 153 ~~~~~~~P-~li~~G~~D~~v~~~~~~-~~~~l~~~g~~~~~~~~---~-~gH~~~~---~---~~~~i~~~l~~~~~ 218 (223)
T 3b5e_A 153 ATDLAGIR-TLIIAGAADETYGPFVPA-LVTLLSRHGAEVDARII---P-SGHDIGD---P---DAAIVRQWLAGPIA 218 (223)
T ss_dssp CCCCTTCE-EEEEEETTCTTTGGGHHH-HHHHHHHTTCEEEEEEE---S-CCSCCCH---H---HHHHHHHHHHCC--
T ss_pred cccccCCC-EEEEeCCCCCcCCHHHHH-HHHHHHHCCCceEEEEe---c-CCCCcCH---H---HHHHHHHHHHhhhh
Confidence 11223566 999999999999999999 99999988776655555 3 7897632 2 22356788877654
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-17 Score=155.31 Aligned_cols=191 Identities=14% Similarity=0.035 Sum_probs=116.9
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHC--CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDR--GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
.|+||++||-.++............+.++ ||.|+++|++|+| + |..+.++.++.. .+
T Consensus 2 mptIl~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~~pdl~~~g---~----------------~~~~~l~~~~~~--~~ 60 (202)
T 4fle_A 2 MSTLLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQIPQLPPYP---A----------------EAAEMLESIVMD--KA 60 (202)
T ss_dssp -CEEEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEECCCCCSSH---H----------------HHHHHHHHHHHH--HT
T ss_pred CcEEEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEEEeCCCCCH---H----------------HHHHHHHHHHHh--cC
Confidence 48999999943322211112223344444 5999999999765 2 223334444433 24
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCC--CCHHHHHHHHcCCcccc
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP--WKEEFYFYMKSYSPVDN 561 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~sp~~~ 561 (648)
+++|+++|+||||++|+.++.++|+...+++...+..+.......... ....+.+ ......... .+....
T Consensus 61 ~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--~~~~~~ 132 (202)
T 4fle_A 61 GQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQ------NPYTGQKYVLESRHIYDL--KAMQIE 132 (202)
T ss_dssp TSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEE------CTTTCCEEEECHHHHHHH--HTTCCS
T ss_pred CCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhc------cccccccccchHHHHHHH--Hhhhhh
Confidence 579999999999999999999999988887777766554432211000 0000111 122222222 234455
Q ss_pred CCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCC
Q 006375 562 VKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 562 ~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
+.++++| +||+||++|.+||+.++.++++ .+++++++ ++||.... ..+.++ .+.+||.-..|++
T Consensus 133 ~~~~~~P-~LiihG~~D~~Vp~~~s~~l~~-------~~~l~i~~---g~~H~~~~-~~~~~~---~I~~FL~~a~~l~ 196 (202)
T 4fle_A 133 KLESPDL-LWLLQQTGDEVLDYRQAVAYYT-------PCRQTVES---GGNHAFVG-FDHYFS---PIVTFLGLATALE 196 (202)
T ss_dssp SCSCGGG-EEEEEETTCSSSCHHHHHHHTT-------TSEEEEES---SCCTTCTT-GGGGHH---HHHHHHTCCCCTT
T ss_pred hhccCce-EEEEEeCCCCCCCHHHHHHHhh-------CCEEEEEC---CCCcCCCC-HHHHHH---HHHHHHhhhhhcc
Confidence 6677888 9999999999999999988763 34566665 89996532 222222 4578987665654
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=151.56 Aligned_cols=190 Identities=14% Similarity=0.115 Sum_probs=129.4
Q ss_pred cCCCCcEEEEecCCCCCCCCCCCchhHHHHHH--CCCEEEEEccCCCC------CCChhhhhc-ccc---cCCCCcH---
Q 006375 402 LDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD--RGFIFAIAQIRGGG------ELGRQWYEN-GKF---LKKKNTF--- 466 (648)
Q Consensus 402 ~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~--~G~~v~~~~~rG~g------~~g~~~~~~-~~~---~~~~~~~--- 466 (648)
.+++.|+||++||..+... .|......|++ +||.|+++|++|.+ ..+..|.+. +.. ......+
T Consensus 20 ~~~~~~~vv~lHG~~~~~~--~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~~~ 97 (226)
T 3cn9_A 20 APNADACIIWLHGLGADRT--DFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPARAIDEDQLNAS 97 (226)
T ss_dssp CTTCCEEEEEECCTTCCGG--GGHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSSTTCBCHHHHHHH
T ss_pred CCCCCCEEEEEecCCCChH--HHHHHHHHHhhcCCCcEEEeecCCCCccccCCCCccccccccccccccccccchhHHHH
Confidence 3456899999999765432 36666778887 89999999888531 111222211 111 0111223
Q ss_pred -hHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHh-hCCCceeEEEecCCcccccccccCCCCCCCcccccccCCC
Q 006375 467 -TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN-MRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP 544 (648)
Q Consensus 467 -~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~-~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~ 544 (648)
+|+.+.++++.+ ..+++++|+++|+|+||.+++.++. ++|+.++++|+.+|..+.....
T Consensus 98 ~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~------------------ 158 (226)
T 3cn9_A 98 ADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDL------------------ 158 (226)
T ss_dssp HHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGGC------------------
T ss_pred HHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchhh------------------
Confidence 444444444444 2468899999999999999999999 9999999999999976643211
Q ss_pred CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHH
Q 006375 545 WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLR 624 (648)
Q Consensus 545 ~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~ 624 (648)
.+. ..++++| +|+++|++|..||+.++.++++.+...+.+.+++++ + +||.....
T Consensus 159 ----------~~~----~~~~~~P-~lii~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~---~-~gH~~~~~------ 213 (226)
T 3cn9_A 159 ----------ALD----ERHKRIP-VLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDY---P-MGHEVSLE------ 213 (226)
T ss_dssp ----------CCC----TGGGGCC-EEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEE---S-CCSSCCHH------
T ss_pred ----------hhc----ccccCCC-EEEEecCCCCccCHHHHHHHHHHHHHcCCceeEEEe---c-CCCCcchh------
Confidence 001 1334667 999999999999999999999999988776655555 3 78975322
Q ss_pred HHHHHHHHHHHhc
Q 006375 625 EAAFTYTFLMRAL 637 (648)
Q Consensus 625 ~~~~~~~fl~~~l 637 (648)
....+.+||.++|
T Consensus 214 ~~~~i~~~l~~~l 226 (226)
T 3cn9_A 214 EIHDIGAWLRKRL 226 (226)
T ss_dssp HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhhC
Confidence 2234678998765
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=160.41 Aligned_cols=222 Identities=16% Similarity=0.122 Sum_probs=135.2
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCC-CCCChhhh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGG-GELGRQWY 454 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~-g~~g~~~~ 454 (648)
++...+++.+|.+|.++...|+.. ..++.|+||++||..+.. ..|...+..|+++||.|+.+|+||+ |.......
T Consensus 7 ~~~~~i~~~dG~~l~~~~~~p~~~--~~~~~~~VvllHG~g~~~--~~~~~~~~~L~~~G~~Vi~~D~rGh~G~S~~~~~ 82 (305)
T 1tht_A 7 TIAHVLRVNNGQELHVWETPPKEN--VPFKNNTILIASGFARRM--DHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSID 82 (305)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTT--SCCCSCEEEEECTTCGGG--GGGHHHHHHHHTTTCCEEEECCCBCC--------
T ss_pred ceEEEEEcCCCCEEEEEEecCccc--CCCCCCEEEEecCCccCc--hHHHHHHHHHHHCCCEEEEeeCCCCCCCCCCccc
Confidence 456677888999999886655431 123468999999955433 2466777788889999999999997 65432211
Q ss_pred hcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc---cCCCC
Q 006375 455 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM---LDPTI 531 (648)
Q Consensus 455 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~---~~~~~ 531 (648)
. ..-....+|+.+++++|...+ ..++.++|+||||.+++.++.+ | .++++|+.+|..++.... .....
T Consensus 83 ~----~~~~~~~~D~~~~~~~l~~~~---~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~~~~~~~~~~~~~~ 153 (305)
T 1tht_A 83 E----FTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVNLRDTLEKALGFDY 153 (305)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSCHHHHHHHHHSSCG
T ss_pred c----eehHHHHHHHHHHHHHHHhCC---CCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchhHHHHHHHHhhhhh
Confidence 0 000112477888888887543 3789999999999999999987 7 789999888765432110 00000
Q ss_pred -CCCccccc---cc-CCCCCHHHH-HHHHcC------CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCC
Q 006375 532 -PLTTAEWE---EW-GDPWKEEFY-FYMKSY------SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599 (648)
Q Consensus 532 -~~~~~~~~---~~-g~~~~~~~~-~~~~~~------sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~ 599 (648)
........ .+ +.......+ ...... +....+.++++| +|++||++|..||+..+.++++++... .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vLii~G~~D~~vp~~~~~~l~~~i~~~--~ 230 (305)
T 1tht_A 154 LSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVP-LIAFTANNDDWVKQEEVYDMLAHIRTG--H 230 (305)
T ss_dssp GGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSC-EEEEEETTCTTSCHHHHHHHHTTCTTC--C
T ss_pred hhcchhhCcccccccccccCHHHHHHHHHhccccchhhHHHHHhhcCCC-EEEEEeCCCCccCHHHHHHHHHhcCCC--C
Confidence 00000000 00 100001111 111111 122356677898 999999999999998888776655322 2
Q ss_pred CCeEEEEecCCCCccCC
Q 006375 600 DNILLFKCELGAGHFSK 616 (648)
Q Consensus 600 ~~~~~~~~~~~~gH~~~ 616 (648)
.++++++ ++||...
T Consensus 231 ~~l~~i~---~agH~~~ 244 (305)
T 1tht_A 231 CKLYSLL---GSSHDLG 244 (305)
T ss_dssp EEEEEET---TCCSCTT
T ss_pred cEEEEeC---CCCCchh
Confidence 3455554 8999765
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-16 Score=154.32 Aligned_cols=185 Identities=16% Similarity=0.185 Sum_probs=128.1
Q ss_pred EEEEEeeCcccc-CCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHH
Q 006375 391 ICIVYRKNLVKL-DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF 469 (648)
Q Consensus 391 ~~l~~~~~~~~~-~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~ 469 (648)
+.+++|+.. .. +++.|+||++||+.+.. ..|...+..|+++||.|+++|+||++ ...|+
T Consensus 34 ~~~~~p~~~-~~~g~~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~~s~-----------------~~~~~ 93 (258)
T 2fx5_A 34 CRIYRPRDL-GQGGVRHPVILWGNGTGAGP--STYAGLLSHWASHGFVVAAAETSNAG-----------------TGREM 93 (258)
T ss_dssp EEEEEESST-TGGGCCEEEEEEECCTTCCG--GGGHHHHHHHHHHTCEEEEECCSCCT-----------------TSHHH
T ss_pred EEEEeCCCC-cccCCCceEEEEECCCCCCc--hhHHHHHHHHHhCCeEEEEecCCCCc-----------------cHHHH
Confidence 667788753 11 23689999999976533 34666677888899999999999641 11466
Q ss_pred HHHHHHHHHc---------CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccc
Q 006375 470 IACAEYLIKN---------CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEE 540 (648)
Q Consensus 470 ~~~~~~l~~~---------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 540 (648)
..+++++.+. ..+|.++++++|+||||.+++.++. ++.++++|+..|.... .
T Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~--~~~v~~~v~~~~~~~~--------~--------- 154 (258)
T 2fx5_A 94 LACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAGQ--DTRVRTTAPIQPYTLG--------L--------- 154 (258)
T ss_dssp HHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHTT--STTCCEEEEEEECCSS--------T---------
T ss_pred HHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhcc--CcCeEEEEEecCcccc--------c---------
Confidence 6677776543 2457789999999999999888873 5679999987764321 0
Q ss_pred cCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCch-HHHHHHHHHhcCCCCCeEEEEecCCCCccCCCch
Q 006375 541 WGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSE-PAKFVAKLREMKTDDNILLFKCELGAGHFSKSGR 619 (648)
Q Consensus 541 ~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~ 619 (648)
+.. ...+.++++| +|+++|++|..+|+.. +.+++++ .+.+.++++++ ++||+.....
T Consensus 155 ---~~~------------~~~~~~i~~P-~lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~---g~~H~~~~~~ 212 (258)
T 2fx5_A 155 ---GHD------------SASQRRQQGP-MFLMSGGGDTIAFPYLNAQPVYRR---ANVPVFWGERR---YVSHFEPVGS 212 (258)
T ss_dssp ---TCC------------GGGGGCCSSC-EEEEEETTCSSSCHHHHTHHHHHH---CSSCEEEEEES---SCCTTSSTTT
T ss_pred ---ccc------------hhhhccCCCC-EEEEEcCCCcccCchhhHHHHHhc---cCCCeEEEEEC---CCCCccccch
Confidence 000 1134456777 9999999999999875 7777766 23445555564 8899775543
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 006375 620 FERLREAAFTYTFLMRALS 638 (648)
Q Consensus 620 ~~~~~~~~~~~~fl~~~l~ 638 (648)
.+.+.. .+.+||.++|.
T Consensus 213 ~~~~~~--~i~~fl~~~l~ 229 (258)
T 2fx5_A 213 GGAYRG--PSTAWFRFQLM 229 (258)
T ss_dssp CGGGHH--HHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHhc
Confidence 333332 56789998874
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-16 Score=155.84 Aligned_cols=201 Identities=10% Similarity=0.079 Sum_probs=131.0
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCC-----CchhHHHHHHC----CCEEEEEccCC
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-----FNSSRLSLLDR----GFIFAIAQIRG 445 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~-----~~~~~~~l~~~----G~~v~~~~~rG 445 (648)
..+.+.+.+.++ .++++++.|++. ..++++|+|+++||+.+....+. +......|+++ +++|+++|.+|
T Consensus 40 ~~~~~~~~s~~~-~~~~~vy~P~~~-~~~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~pd~~~ 117 (297)
T 1gkl_A 40 RIVKETYTGING-TKSLNVYLPYGY-DPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNG 117 (297)
T ss_dssp EEEEEEEEETTE-EEEEEEEECTTC-CTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEECCSCS
T ss_pred eEEEEEEEcCCC-EEEEEEEeCCCC-CCCCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEEecCcC
Confidence 456777888776 799999999876 55578999999999866443221 12234566666 49999999997
Q ss_pred CCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC------------CCCCeEEEEeeChhHHHHHHHHhhCCCceeEE
Q 006375 446 GGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY------------CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAA 513 (648)
Q Consensus 446 ~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~------------~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~ 513 (648)
+.+.+..|.+ ...+|+ +.++.++.. .|+.+++|+|+||||++++.++.++|++|+++
T Consensus 118 ~~~~~~~~~~--------~~~~~l---~~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~f~~~ 186 (297)
T 1gkl_A 118 GNCTAQNFYQ--------EFRQNV---IPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYF 186 (297)
T ss_dssp TTCCTTTHHH--------HHHHTH---HHHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEE
T ss_pred CccchHHHHH--------HHHHHH---HHHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchhhhee
Confidence 6544443321 112344 444444322 37789999999999999999999999999999
Q ss_pred EecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHH
Q 006375 514 VAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKL 593 (648)
Q Consensus 514 v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l 593 (648)
++.+|...+... . .. ........+. ...++....+ +++.+|++|..+ .++++++++|
T Consensus 187 v~~sg~~~~~~~---------~--~~-----~~~~~~~~~~----~~~~~~~~~~-l~~~~G~~D~~~--~~~~~l~~~L 243 (297)
T 1gkl_A 187 MPLSGDYWYGNS---------P--QD-----KANSIAEAIN----RSGLSKREYF-VFAATGSEDIAY--ANMNPQIEAM 243 (297)
T ss_dssp EEESCCCCBSSS---------H--HH-----HHHHHHHHHH----HHTCCTTSCE-EEEEEETTCTTH--HHHHHHHHHH
T ss_pred eEeccccccCCc---------c--ch-----hhhHHHHHHh----hccCCcCcEE-EEEEeCCCcccc--hhHHHHHHHH
Confidence 999997542110 0 00 0000111111 1123322344 778899999864 5789999999
Q ss_pred HhcC----------CCCCeEEEEecCCCCcc
Q 006375 594 REMK----------TDDNILLFKCELGAGHF 614 (648)
Q Consensus 594 ~~~~----------~~~~~~~~~~~~~~gH~ 614 (648)
++++ .+.+ +...+++||.
T Consensus 244 ~~~g~~~~~~~~~~~~~~---~~~~~g~gH~ 271 (297)
T 1gkl_A 244 KALPHFDYTSDFSKGNFY---FLVAPGATHW 271 (297)
T ss_dssp HTSTTCCBBSCTTTCCEE---EEEETTCCSS
T ss_pred HHcCCccccccccCCceE---EEECCCCCcC
Confidence 9887 3444 3344478994
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=165.82 Aligned_cols=214 Identities=17% Similarity=0.089 Sum_probs=135.9
Q ss_pred ceEEEEEeCC-CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHH-HHCC---CEEEEEccCCCCCC
Q 006375 375 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSL-LDRG---FIFAIAQIRGGGEL 449 (648)
Q Consensus 375 ~~~~~~~~s~-~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l-~~~G---~~v~~~~~rG~g~~ 449 (648)
..+.+.+.|. +|.++.++++.|++. ..++++|+|+++||+........+......+ .+.| ++|+.+++|+++.+
T Consensus 17 ~~~~~~~~s~~~g~~~~~~v~~P~~~-~~~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~~~~~~~~ 95 (275)
T 2qm0_A 17 NTEQWKMYSKLEGKEYQIHISKPKQP-APDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAF 95 (275)
T ss_dssp TEEEEEEECTTTCCEEEEEEECCSSC-CCTTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEECSCSSSC
T ss_pred CceEEEEEecCCCCEEEEEEECCCCC-CCCCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEECCCCCCcC
Confidence 4677888886 688999999999886 5567899999999974311100011011112 2357 99999999986544
Q ss_pred Chhhh--hcccc-------------cC-CCC---cHhHHH--HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC
Q 006375 450 GRQWY--ENGKF-------------LK-KKN---TFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD 508 (648)
Q Consensus 450 g~~~~--~~~~~-------------~~-~~~---~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~ 508 (648)
+..-+ +.... .+ ... .+.|++ ..+.++.++..+|+++++++|+||||++++.++.++|+
T Consensus 96 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~~~~~~p~ 175 (275)
T 2qm0_A 96 SGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALHILFTNLN 175 (275)
T ss_dssp CHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCGG
T ss_pred cccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHHHHHhCch
Confidence 32100 00000 00 011 333433 34555666555789999999999999999999999999
Q ss_pred ceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHH
Q 006375 509 LFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAK 588 (648)
Q Consensus 509 ~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~ 588 (648)
+|+++++.+|.+++....+ . .. .... +...+ ...... +++|+||+.|..++..++++
T Consensus 176 ~f~~~~~~s~~~~~~~~~~-----------~--~~--~~~~---~~~~~----~~~~~~-~~~l~~G~~D~~~~~~~~~~ 232 (275)
T 2qm0_A 176 AFQNYFISSPSIWWNNKSV-----------L--EK--EENL---IIELN----NAKFET-GVFLTVGSLEREHMVVGANE 232 (275)
T ss_dssp GCSEEEEESCCTTHHHHGG-----------G--GG--TTHH---HHHHH----TCSSCE-EEEEEEETTSCHHHHHHHHH
T ss_pred hhceeEEeCceeeeChHHH-----------H--HH--HHHH---Hhhhc----ccCCCc-eEEEEeCCcccchhhHHHHH
Confidence 9999999999864321100 0 00 0011 11100 122234 59999999999999999999
Q ss_pred HHHHH---HhcCCCCCeEEEEecCCCCccC
Q 006375 589 FVAKL---REMKTDDNILLFKCELGAGHFS 615 (648)
Q Consensus 589 ~~~~l---~~~~~~~~~~~~~~~~~~gH~~ 615 (648)
++++| ++.+.+.++.++ ++++|+.
T Consensus 233 ~~~~L~~~~~~g~~~~~~~~---~g~~H~~ 259 (275)
T 2qm0_A 233 LSERLLQVNHDKLKFKFYEA---EGENHAS 259 (275)
T ss_dssp HHHHHHHCCCTTEEEEEEEE---TTCCTTT
T ss_pred HHHHHHhcccCCceEEEEEC---CCCCccc
Confidence 99999 445555444444 4888853
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-16 Score=150.55 Aligned_cols=184 Identities=15% Similarity=0.137 Sum_probs=129.1
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEE--ccCCCCCCChhhhhccc-cc-CC---CCcHhHHHHHHHHH
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIA--QIRGGGELGRQWYENGK-FL-KK---KNTFTDFIACAEYL 476 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~--~~rG~g~~g~~~~~~~~-~~-~~---~~~~~D~~~~~~~l 476 (648)
++.|+||++||+.+... .|......|++ ||.|+++ |.||.|... |..... .. .. ...++++.+.++++
T Consensus 36 ~~~~~vv~~HG~~~~~~--~~~~~~~~l~~-g~~v~~~~~d~~g~g~s~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (226)
T 2h1i_A 36 TSKPVLLLLHGTGGNEL--DLLPLAEIVDS-EASVLSVRGNVLENGMPR--FFRRLAEGIFDEEDLIFRTKELNEFLDEA 110 (226)
T ss_dssp TTSCEEEEECCTTCCTT--TTHHHHHHHHT-TSCEEEECCSEEETTEEE--SSCEEETTEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCChh--HHHHHHHHhcc-CceEEEecCcccCCcchh--hccccCccCcChhhHHHHHHHHHHHHHHH
Confidence 46799999999765433 35665666666 9999999 788776431 111100 00 00 11234566666666
Q ss_pred HHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcC
Q 006375 477 IKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSY 556 (648)
Q Consensus 477 ~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 556 (648)
.++..+++++++++|+|+||.+++.++.++|++++++|+.+|..+...
T Consensus 111 ~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~-------------------------------- 158 (226)
T 2h1i_A 111 AKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG-------------------------------- 158 (226)
T ss_dssp HHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS--------------------------------
T ss_pred HhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc--------------------------------
Confidence 776667889999999999999999999999999999999998754311
Q ss_pred CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHh
Q 006375 557 SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 557 sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 636 (648)
.......+.| +|+++|++|..+|+..+.++++++...+.+.++ +++ ++||... .+ ....+.+||.++
T Consensus 159 --~~~~~~~~~p-~l~~~G~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~gH~~~---~~---~~~~~~~~l~~~ 225 (226)
T 2h1i_A 159 --MQLANLAGKS-VFIAAGTNDPICSSAESEELKVLLENANANVTM-HWE---NRGHQLT---MG---EVEKAKEWYDKA 225 (226)
T ss_dssp --CCCCCCTTCE-EEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEE-EEE---SSTTSCC---HH---HHHHHHHHHHHH
T ss_pred --cccccccCCc-EEEEeCCCCCcCCHHHHHHHHHHHHhcCCeEEE-EeC---CCCCCCC---HH---HHHHHHHHHHHh
Confidence 0011122455 999999999999999999999999987766544 555 8899763 22 223457888876
Q ss_pred c
Q 006375 637 L 637 (648)
Q Consensus 637 l 637 (648)
|
T Consensus 226 l 226 (226)
T 2h1i_A 226 F 226 (226)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=156.10 Aligned_cols=241 Identities=12% Similarity=0.101 Sum_probs=147.9
Q ss_pred eEEEEEeCC-CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchh---HHHHHHCCCEEEEEccCCCCCCCh
Q 006375 376 TERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSS---RLSLLDRGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 376 ~~~~~~~s~-~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~---~~~l~~~G~~v~~~~~rG~g~~g~ 451 (648)
.+.+.+.|. .+.+++++ .|+.. + |+|+++||..+......|... ...++++|++|+++|.+|++.+..
T Consensus 6 ~~~~~~~s~~~~~~~~v~--~~p~~----~--~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~~~~~ 77 (280)
T 1dqz_A 6 VEYLQVPSASMGRDIKVQ--FQGGG----P--HAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTD 77 (280)
T ss_dssp EEEEEEEETTTTEEEEEE--EECCS----S--SEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTCTTSB
T ss_pred EEEEEEECcccCceeEEE--EcCCC----C--CEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCccccC
Confidence 445555544 46677766 34332 2 589999997531122223221 245667799999999876543321
Q ss_pred hhhhcccc--cCCCCcHhHHH--HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc-
Q 006375 452 QWYENGKF--LKKKNTFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM- 526 (648)
Q Consensus 452 ~~~~~~~~--~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~- 526 (648)
|...... ......+.++. +++.++.++..+++++++|+|+||||++++.++.++|++|+++|+.+|.+++....
T Consensus 78 -~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~ 156 (280)
T 1dqz_A 78 -WYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWW 156 (280)
T ss_dssp -CSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTTH
T ss_pred -CCCCCccccccccccHHHHHHHHHHHHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccccCcch
Confidence 1111000 00123444432 45555555334677899999999999999999999999999999999987753210
Q ss_pred ---cC----CCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCC--CCCeEEEeecCCCC--------------ccCC
Q 006375 527 ---LD----PTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ--NYPHILVTAGLNDP--------------RVMY 583 (648)
Q Consensus 527 ---~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~--~~P~~li~~g~~D~--------------~v~~ 583 (648)
.. ....+ .....||+|..+ .+.+.+|..++.+. +-+|++|.||+.|. .+++
T Consensus 157 ~~~~~~~~~~~~~~--~~~~~~g~~~~~----~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~~~ 230 (280)
T 1dqz_A 157 PTLIGLAMNDSGGY--NANSMWGPSSDP----AWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTL 230 (280)
T ss_dssp HHHHHHHHHHTTSC--CHHHHHCSTTSH----HHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHH
T ss_pred hhhHHHHhhhccCc--CHHHhcCCCCch----hhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccchhhHHHHHH
Confidence 00 00000 001335665432 23556887665543 22359999999997 5788
Q ss_pred chHHHHHHHHHhcC-CCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 584 SEPAKFVAKLREMK-TDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 584 ~~~~~~~~~l~~~~-~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
.++++++++|++.+ .+. .+...++++|... .--..+.+.+.||.+.||
T Consensus 231 ~~~~~~~~~L~~~g~~~~---~~~~~~~g~H~~~----~w~~~l~~~l~~l~~~l~ 279 (280)
T 1dqz_A 231 RTNQTFRDTYAADGGRNG---VFNFPPNGTHSWP----YWNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHHHHHHHTTCCSE---EEECCSCCCSSHH----HHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCce---EEEecCCCccChH----HHHHHHHHHHHHHHHHhC
Confidence 99999999999988 764 3444346789421 111234466889988886
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-15 Score=155.06 Aligned_cols=261 Identities=9% Similarity=0.058 Sum_probs=158.1
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc-cC-ccceeEEecCC-eEEEEEeCC--------CC-----
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VG-VTASVEWAGNE-ALVYITMDE--------IL----- 148 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~-~~~~~~WspDg-~l~y~~~~~--------~~----- 148 (648)
.++|||||++|||..+.+| ..+||++|+++++.+..+. .. ....+.||||| .|+|...+. ..
T Consensus 40 ~~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~ 117 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFDG--PWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV 117 (388)
T ss_dssp SCCBCTTSCEEEEEECTTS--SCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred CccCCCCCCEEEEEEcCCC--CceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee
Confidence 3789999999999998666 4689999999998775432 22 22257899999 898876421 00
Q ss_pred ------------------------------------------------CCceEEEEECCCCCCCcEEEEeecCCCeEEEE
Q 006375 149 ------------------------------------------------RPDKAWLHKLEADQSNDICLYHEKDDIYSLGL 180 (648)
Q Consensus 149 ------------------------------------------------~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (648)
...+|+++++.++ +...+... ......+
T Consensus 118 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g--~~~~l~~~--~~~~~~~ 193 (388)
T 3pe7_A 118 YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG--ESTVILQE--NQWLGHP 193 (388)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC--CEEEEEEE--SSCEEEE
T ss_pred eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC--ceEEeecC--Ccccccc
Confidence 0123555555554 22223222 2234467
Q ss_pred EeCC-CCcEEEEEEccc---cccEEEEEECCCCCceeEeeecccc---eeeeEeecCCEEEEEeccCCCCCcEEEEEeCC
Q 006375 181 QASE-SKKFLFIASESK---ITRFVFYLDVSKPEELRVLTPRVVG---VDTAASHRGNHFFITRRSDELFNSELLACPVD 253 (648)
Q Consensus 181 ~~s~-Dg~~l~~~~~~~---~~~~l~~~dl~~~~~~~~l~~~~~~---~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~ 253 (648)
.||| ||++|++.+... ...+||++|++++. .+.++....+ ....|||||+.|+|.++..+..+..|+++|++
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 194 IYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE 272 (388)
T ss_dssp EEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT
T ss_pred EECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecC
Confidence 8999 999999877642 24689999998876 6667654422 23469999999999888754444569999998
Q ss_pred CCCcceeEecCCCC------cccceEEEeCCEEEEEEec------CCeeEEEEEEcCCCCCcccccCCCce-ee--cCCC
Q 006375 254 NTSETTVLIPHRES------VKLQDIQLFIDHLAVYERE------GGLQKITTYRLPAVGEPLKSLQGGKS-VE--FIDP 318 (648)
Q Consensus 254 ~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~------~~~~~l~v~~~~~~g~~~~~l~~~~~-i~--~~~~ 318 (648)
+. ..+.+...... ..-..++++++.+++...+ .+...|++++++ ++.+..++.... .. ....
T Consensus 273 ~g-~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~~l~~~~~~~~~~~~~~ 349 (388)
T 3pe7_A 273 TL-ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK--NGTQHRVARHDTSWKVFEGDR 349 (388)
T ss_dssp TC-CEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT--TTEEEEEEECCCCCCCBTTBS
T ss_pred CC-ceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc--CCceEEeccccCccccccccc
Confidence 73 33323222110 1112467777777766543 556789999887 443332221110 00 0000
Q ss_pred eeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 319 VYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 319 ~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
...+....+++|+..++|.. +....+.+|.+++.++.
T Consensus 350 ~~~~~~~~~spDg~~l~~~s-~~~g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 350 QVTHPHPSFTPDDKQILFTS-DVHGKPALYLATLPESV 386 (388)
T ss_dssp STTCCCCEECTTSSEEEEEE-CTTSSCEEEEEECCGGG
T ss_pred ccCCCCccCCCCCCEEEEEe-cCCCceeEEEEECChhc
Confidence 00123345678888777664 44556779999987653
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=164.34 Aligned_cols=208 Identities=14% Similarity=0.186 Sum_probs=135.9
Q ss_pred CeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCCh--------------
Q 006375 386 GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR-------------- 451 (648)
Q Consensus 386 g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~-------------- 451 (648)
...+|.....|.. .+++.|+||++||+.+.. ..|...+..|+++||+|+++|+||+|....
T Consensus 81 ~~~~p~~~~~P~~---~~~~~P~Vv~~HG~~~~~--~~~~~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~ 155 (383)
T 3d59_A 81 SMTTPANWNSPLR---PGEKYPLVVFSHGLGAFR--TLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDK 155 (383)
T ss_dssp TCEESSEETCCBC---CSSCEEEEEEECCTTCCT--TTTHHHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCC
T ss_pred ceeeccccCCCcc---cCCCCCEEEEcCCCCCCc--hHHHHHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCc
Confidence 3456655333322 235789999999976554 346677889999999999999999875421
Q ss_pred hhhhc----ccc------cCCCCcHhHHHHHHHHHHH--------------------cCCCCCCeEEEEeeChhHHHHHH
Q 006375 452 QWYEN----GKF------LKKKNTFTDFIACAEYLIK--------------------NCYCTKEKLCIEGRSAGGLLIGA 501 (648)
Q Consensus 452 ~~~~~----~~~------~~~~~~~~D~~~~~~~l~~--------------------~~~~d~~~i~i~G~S~GG~l~~~ 501 (648)
.|... +.. ..-....+|+.+++++|.+ .+.+|++||+++|+|+||.+++.
T Consensus 156 ~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~ 235 (383)
T 3d59_A 156 SWLYLRTLKQEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQ 235 (383)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHH
T ss_pred eeeeccccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHH
Confidence 11100 000 0000124788999999876 45678899999999999999999
Q ss_pred HHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCcc
Q 006375 502 VLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRV 581 (648)
Q Consensus 502 ~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v 581 (648)
++.+.| .++++|+..|... +. ..+ .+.+++.| +|++||++|..+
T Consensus 236 ~a~~~~-~v~a~v~~~~~~~----------p~------------~~~------------~~~~i~~P-~Lii~g~~D~~~ 279 (383)
T 3d59_A 236 TLSEDQ-RFRCGIALDAWMF----------PL------------GDE------------VYSRIPQP-LFFINSEYFQYP 279 (383)
T ss_dssp HHHHCT-TCCEEEEESCCCT----------TC------------CGG------------GGGSCCSC-EEEEEETTTCCH
T ss_pred HHhhCC-CccEEEEeCCccC----------CC------------chh------------hhccCCCC-EEEEecccccch
Confidence 988766 5999999887421 10 000 11344667 999999999754
Q ss_pred CCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC--------------------chHHHHHHH-HHHHHHHHHhcCCC
Q 006375 582 MYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS--------------------GRFERLREA-AFTYTFLMRALSML 640 (648)
Q Consensus 582 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~--------------------~~~~~~~~~-~~~~~fl~~~l~~~ 640 (648)
...+..+++.+.+.+.++++++ +++|.... +.....+.. ..+++||.++|+..
T Consensus 280 ---~~~~~~~~l~~~~~~~~~~~~~---g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L~~~ 353 (383)
T 3d59_A 280 ---ANIIKMKKCYSPDKERKMITIR---GSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHLGLH 353 (383)
T ss_dssp ---HHHHHHHTTCCTTSCEEEEEET---TCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ---hhHHHHHHHHhcCCceEEEEeC---CCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHcCCc
Confidence 2334446666666666666665 88996521 122222222 25789999999764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-14 Score=149.50 Aligned_cols=201 Identities=10% Similarity=0.032 Sum_probs=144.1
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
+..++|||||++|||....+| ..+|+++|+++|+..... ..+....++|+||| .|+|+... ....+||.+++.+
T Consensus 181 v~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~--~g~~~i~~~d~~~ 256 (415)
T 2hqs_A 181 LMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSK--TGSLNLYVMDLAS 256 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECT--TSSCEEEEEETTT
T ss_pred ceeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEec--CCCceEEEEECCC
Confidence 568999999999999987655 468999999999876432 23345569999999 89887753 2345799999987
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEecc
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRS 239 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~ 239 (648)
+. ...+ ... ......+.|||||++|++.+...+...||++|+.+++ .+.++..... ....|+|||+.|++.+..
T Consensus 257 ~~--~~~l-~~~-~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 257 GQ--IRQV-TDG-RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSN 331 (415)
T ss_dssp CC--EEEC-CCC-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred CC--EEeC-cCC-CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-EEEEecCCCcccCeEECCCCCEEEEEECc
Confidence 62 2222 222 2345578999999999998876666799999999887 5655543222 235699999999998875
Q ss_pred CCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEe--CCEEEEEEecCCeeEEEEEEcC
Q 006375 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
+ ....|+++|+++. ....+..+ . .+..+.+. ++.+++....++...|++++++
T Consensus 332 ~--g~~~i~~~d~~~~-~~~~l~~~-~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 332 G--GQQHIAKQDLATG-GVQVLSST-F--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp S--SCEEEEEEETTTC-CEEECCCS-S--SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred C--CceEEEEEECCCC-CEEEecCC-C--CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 3 3578999999863 33323332 2 34455554 5567777777777789999987
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=155.19 Aligned_cols=225 Identities=21% Similarity=0.229 Sum_probs=131.5
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 459 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 459 (648)
++++.||.+|.... . ++.|.||++||..+... .|...+..|+++||.|+++|+||.|.....+
T Consensus 2 ~~~~~~g~~l~y~~-----~----G~g~~vvllHG~~~~~~--~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~------ 64 (271)
T 3ia2_A 2 TFVAKDGTQIYFKD-----W----GSGKPVLFSHGWLLDAD--MWEYQMEYLSSRGYRTIAFDRRGFGRSDQPW------ 64 (271)
T ss_dssp EEECTTSCEEEEEE-----E----SSSSEEEEECCTTCCGG--GGHHHHHHHHTTTCEEEEECCTTSTTSCCCS------
T ss_pred eEEcCCCCEEEEEc-----c----CCCCeEEEECCCCCcHH--HHHHHHHHHHhCCceEEEecCCCCccCCCCC------
Confidence 35678888775431 1 22356899999655433 4666677888889999999999988764321
Q ss_pred cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh-CCCceeEEEecCCcccccccccC--CCCCCCc-
Q 006375 460 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM-RPDLFKAAVAAVPFVDVLTTMLD--PTIPLTT- 535 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~-~p~~~~a~v~~~~~~d~~~~~~~--~~~~~~~- 535 (648)
....++++.+.+..+++. .+.+++.++|+||||.+++.++++ .|++++++|+..+.......... ...+...
T Consensus 65 --~~~~~~~~a~d~~~~l~~--l~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 140 (271)
T 3ia2_A 65 --TGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVF 140 (271)
T ss_dssp --SCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHH
T ss_pred --CCCCHHHHHHHHHHHHHH--hCCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCCCCCcccccHHHH
Confidence 123455555555554443 234789999999999866655554 58999999988764322111000 0000000
Q ss_pred -----------ccc-c-----cc----CCCCCHHH-------------------HHHHHcCCccccCCCCCCCeEEEeec
Q 006375 536 -----------AEW-E-----EW----GDPWKEEF-------------------YFYMKSYSPVDNVKAQNYPHILVTAG 575 (648)
Q Consensus 536 -----------~~~-~-----~~----g~~~~~~~-------------------~~~~~~~sp~~~~~~~~~P~~li~~g 575 (648)
..+ . .+ +....+.. ...+...+....+.++++| +|+++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~Lvi~G 219 (271)
T 3ia2_A 141 ARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVP-TLVIHG 219 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHTTCCSC-EEEEEE
T ss_pred HHHHHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccccCCCCC-EEEEEe
Confidence 000 0 00 01011100 0011111222345677898 999999
Q ss_pred CCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 576 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
++|..||+..+.++.+++.. ..++.+++ ++||+....+.+.+.+ .+.+||.
T Consensus 220 ~~D~~~p~~~~~~~~~~~~~---~~~~~~~~---~~gH~~~~e~p~~~~~--~i~~Fl~ 270 (271)
T 3ia2_A 220 DGDQIVPFETTGKVAAELIK---GAELKVYK---DAPHGFAVTHAQQLNE--DLLAFLK 270 (271)
T ss_dssp TTCSSSCGGGTHHHHHHHST---TCEEEEET---TCCTTHHHHTHHHHHH--HHHHHHT
T ss_pred CCCCcCChHHHHHHHHHhCC---CceEEEEc---CCCCcccccCHHHHHH--HHHHHhh
Confidence 99999999886666655532 34556665 8999765444443333 4567764
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-16 Score=163.20 Aligned_cols=254 Identities=15% Similarity=0.121 Sum_probs=147.3
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCC----------C-CCchhH---HHHHHCCCEEEEEc
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND----------P-AFNSSR---LSLLDRGFIFAIAQ 442 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~----------~-~~~~~~---~~l~~~G~~v~~~~ 442 (648)
+...++..+|..+...+.|..-......+.|+||++||..+.... . .|...+ ..|+.+||.|+++|
T Consensus 13 ~~~~~~~~~g~~l~~~i~y~~~g~~~~~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D 92 (377)
T 3i1i_A 13 ILKEYTFENGRTIPVQMGYETYGTLNRERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICTD 92 (377)
T ss_dssp EEEEEECTTSCEEEEEEEEEEESCCCTTCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEEC
T ss_pred eecceeecCCCEeeeeEEEEeecccCCCCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEec
Confidence 344566778877744444433210112346899999997665443 0 023333 45667899999999
Q ss_pred cCCCCC--------CChhhhhc--cc---ccCCCCcHhHHHHHHHHHHHcCCCCCCeEE-EEeeChhHHHHHHHHhhCCC
Q 006375 443 IRGGGE--------LGRQWYEN--GK---FLKKKNTFTDFIACAEYLIKNCYCTKEKLC-IEGRSAGGLLIGAVLNMRPD 508 (648)
Q Consensus 443 ~rG~g~--------~g~~~~~~--~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~ 508 (648)
.||.|. .|..-... +. ......+++|+.+.+..+++.- +.+++. ++|+||||.+++.++.++|+
T Consensus 93 ~~G~G~S~G~~~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l~~l--~~~~~~ilvGhS~Gg~ia~~~a~~~p~ 170 (377)
T 3i1i_A 93 NLCNVQVKNPHVITTGPKSINPKTGDEYAMDFPVFTFLDVARMQCELIKDM--GIARLHAVMGPSAGGMIAQQWAVHYPH 170 (377)
T ss_dssp CTTCSCTTSTTCCCCSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHT--TCCCBSEEEEETHHHHHHHHHHHHCTT
T ss_pred ccccccccCCCcccCCCCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHHc--CCCcEeeEEeeCHhHHHHHHHHHHChH
Confidence 998753 11110000 00 0112347788888888877653 346785 99999999999999999999
Q ss_pred ceeEEEe-cCCcccccc-----------cc-cCC---------CCC---------------CCcccc-cccCC-------
Q 006375 509 LFKAAVA-AVPFVDVLT-----------TM-LDP---------TIP---------------LTTAEW-EEWGD------- 543 (648)
Q Consensus 509 ~~~a~v~-~~~~~d~~~-----------~~-~~~---------~~~---------------~~~~~~-~~~g~------- 543 (648)
+++++|+ ..+...... .. ..+ ..| .....+ ..++.
T Consensus 171 ~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (377)
T 3i1i_A 171 MVERMIGVITNPQNPIITSVNVAQNAIEAIRLDPSWKGGKYGEEQPMKGLQLANRMMFMNAFDEHFYETTYPRNSIEVEP 250 (377)
T ss_dssp TBSEEEEESCCSBCCHHHHHHTTHHHHHHHHHSGGGGGGCCTTSCCHHHHHHHHHHHHTTSSCHHHHHHHSCCCSSCCGG
T ss_pred HHHHhcccCcCCCcCCchhhHHHHHHHHHHhcCCCccCCccccCCccchHHHHHHHHhhhcCCHHHHHHHhhhhhccccc
Confidence 9999998 554332000 00 000 000 000000 00111
Q ss_pred -----------------------CCCHHHH----HHHHcCCc-------cccCCCCCCCeEEEeecCCCCccCCchHHHH
Q 006375 544 -----------------------PWKEEFY----FYMKSYSP-------VDNVKAQNYPHILVTAGLNDPRVMYSEPAKF 589 (648)
Q Consensus 544 -----------------------~~~~~~~----~~~~~~sp-------~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~ 589 (648)
......+ ..+..+.+ ...+.++++| +|+++|++|..+|+..+.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vlii~G~~D~~~~~~~~~~~ 329 (377)
T 3i1i_A 251 YEKVSSLTSFEKEINKLTYRSIELVDANSWMYTAKAVLLHDIAHGFSSLEEALSNVEAN-VLMIPCKQDLLQPSRYNYKM 329 (377)
T ss_dssp GTCTTCCCHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHCBTTTTSSCHHHHHHTCCSE-EEEECBTTCSSSCTHHHHHH
T ss_pred cccccchhHHHHHHHHHHhhhhcccCHHHHHHHHHHHhhcccccccCCHHHHHhhCCCC-EEEEecCCccccCHHHHHHH
Confidence 0111111 11111111 2344567888 99999999999999999999
Q ss_pred HHHHHhcCCCCCeEEEEecCC-CCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 590 VAKLREMKTDDNILLFKCELG-AGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 590 ~~~l~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
++.++..+...++++++ + +||.......+.+.+ .+.+||.+++.
T Consensus 330 ~~~~~~~g~~~~~~~i~---~~~gH~~~~e~p~~~~~--~i~~fl~~~~~ 374 (377)
T 3i1i_A 330 VDLLQKQGKYAEVYEIE---SINGHMAGVFDIHLFEK--KVYEFLNRKVS 374 (377)
T ss_dssp HHHHHHTTCCEEECCBC---CTTGGGHHHHCGGGTHH--HHHHHHHSCCS
T ss_pred HHHHHhcCCCceEEEcC---CCCCCcchhcCHHHHHH--HHHHHHHhhhh
Confidence 99997765444444443 6 899654433333333 46789987764
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.7e-16 Score=159.85 Aligned_cols=222 Identities=15% Similarity=0.141 Sum_probs=137.2
Q ss_pred CcEEEEecCCCCCCCCC-----------CCchhH---HHHHHCCCEEEEEccCC--CCCCChhhhhcc--c---ccCCCC
Q 006375 406 DPLLLYGYGSYEICNDP-----------AFNSSR---LSLLDRGFIFAIAQIRG--GGELGRQWYENG--K---FLKKKN 464 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~-----------~~~~~~---~~l~~~G~~v~~~~~rG--~g~~g~~~~~~~--~---~~~~~~ 464 (648)
.|+||++||..+..... .|...+ ..|+.+||.|+++|+|| .|..+..-.... . ......
T Consensus 46 ~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G~~~G~s~~~~~~~~~~~~~~~~~~~~ 125 (366)
T 2pl5_A 46 NNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSSGPLSIHPETSTPYGSRFPFV 125 (366)
T ss_dssp CCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSSSTTSBCTTTSSBCGGGSCCC
T ss_pred CceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCCcccCCCCCCCCCCCCCccccCCCCcc
Confidence 58999999976655421 344333 24557899999999999 565432110000 0 000124
Q ss_pred cHhHHHHHHHHHHHcCCCCCCeE-EEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc----------c-C-CC-
Q 006375 465 TFTDFIACAEYLIKNCYCTKEKL-CIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM----------L-D-PT- 530 (648)
Q Consensus 465 ~~~D~~~~~~~l~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~----------~-~-~~- 530 (648)
.++++.+.+..+++. .+.+++ .++|+||||.+++.++.++|++++++|+.+|........ + . +.
T Consensus 126 ~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (366)
T 2pl5_A 126 SIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNW 203 (366)
T ss_dssp CHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTC
T ss_pred cHHHHHHHHHHHHHH--cCCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEeccCccCCCccchhhHHHHHHHHhCccc
Confidence 678888887777765 344788 899999999999999999999999999998865432100 0 0 00
Q ss_pred --------CC--------------------------------------CCcccccc-----cCCCCCHHH----HHHHHc
Q 006375 531 --------IP--------------------------------------LTTAEWEE-----WGDPWKEEF----YFYMKS 555 (648)
Q Consensus 531 --------~~--------------------------------------~~~~~~~~-----~g~~~~~~~----~~~~~~ 555 (648)
.+ .....+.. +.....+.. ...+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (366)
T 2pl5_A 204 KNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDH 283 (366)
T ss_dssp GGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHH
T ss_pred ccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHHHHHHHHHHhhhcccChhHHHHHHhhhhh
Confidence 00 00000000 000011221 122233
Q ss_pred CCcc------ccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEE-EecCCCCccCCCchHHHHHHHHH
Q 006375 556 YSPV------DNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF-KCELGAGHFSKSGRFERLREAAF 628 (648)
Q Consensus 556 ~sp~------~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~gH~~~~~~~~~~~~~~~ 628 (648)
+... ..+.++++| +|+++|++|..||+..+.++.+.+..++...+++++ + ++||.......+.+.+ .
T Consensus 284 ~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~gH~~~~e~p~~~~~--~ 357 (366)
T 2pl5_A 284 YSLGKGKELTAALSNATCR-FLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQS---GEGHDSFLLKNPKQIE--I 357 (366)
T ss_dssp CBCCSHHHHHHHHTTCCSE-EEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEECC---CBSSGGGGSCCHHHHH--H
T ss_pred hccccccchhhhhccCCCC-EEEEecCCCcccCHHHHHHHHHHhhhcccCeEEEEeCC---CCCcchhhcChhHHHH--H
Confidence 3221 256677888 999999999999999999999999876555555666 4 8899775554443333 4
Q ss_pred HHHHHHH
Q 006375 629 TYTFLMR 635 (648)
Q Consensus 629 ~~~fl~~ 635 (648)
+.+||.+
T Consensus 358 i~~fl~~ 364 (366)
T 2pl5_A 358 LKGFLEN 364 (366)
T ss_dssp HHHHHHC
T ss_pred HHHHHcc
Confidence 5678764
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.67 E-value=6e-15 Score=146.37 Aligned_cols=229 Identities=12% Similarity=0.080 Sum_probs=134.5
Q ss_pred EeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC-CCc-hhHHHHHHCCCEEEEEccCCCCCCChhhhhccc
Q 006375 381 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFN-SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGK 458 (648)
Q Consensus 381 ~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~-~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~ 458 (648)
++..+|.++ .++.|++ ++.|+||++|||....... .+. .....+++.|+.|+.+|||+.++. .|.
T Consensus 9 ~~~~~~~~~--~~y~p~~-----~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~--~~p---- 75 (274)
T 2qru_A 9 QTLANGATV--TIYPTTT-----EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT--KID---- 75 (274)
T ss_dssp EECTTSCEE--EEECCSS-----SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS--CHH----
T ss_pred ccccCCeeE--EEEcCCC-----CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC--CCc----
Confidence 334466544 4444431 4579999999986443332 232 234456677999999999987654 222
Q ss_pred ccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHh---hCCCceeEEEecCCcccccccccCC--CCCC
Q 006375 459 FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN---MRPDLFKAAVAAVPFVDVLTTMLDP--TIPL 533 (648)
Q Consensus 459 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~---~~p~~~~a~v~~~~~~d~~~~~~~~--~~~~ 533 (648)
..++|+.++++||.++.. ++++|+++|+|+||.+++.++. ..+..++++|+.+|..|.....-.. ..|.
T Consensus 76 -----~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~ 149 (274)
T 2qru_A 76 -----HILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKLLKQA 149 (274)
T ss_dssp -----HHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCSCSSC
T ss_pred -----HHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhhcccc
Confidence 347999999999998743 2789999999999999998887 3567889999988887721110000 0110
Q ss_pred Ccccc-ccc-------CCCCCHHH-----------HHHHHcC-Cc----cccCCC---CCCCeEEEeecCCCCccCCchH
Q 006375 534 TTAEW-EEW-------GDPWKEEF-----------YFYMKSY-SP----VDNVKA---QNYPHILVTAGLNDPRVMYSEP 586 (648)
Q Consensus 534 ~~~~~-~~~-------g~~~~~~~-----------~~~~~~~-sp----~~~~~~---~~~P~~li~~g~~D~~v~~~~~ 586 (648)
....+ ... ..+..... +..+... .. ...+.. .+.||+||++|+.|+.++..++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lpP~li~~G~~D~~~~~~~~ 229 (274)
T 2qru_A 150 ISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKTFPPCFSTASSSDEEVPFRYS 229 (274)
T ss_dssp CCSGGGTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHTSCCEEEEEETTCSSSCTHHH
T ss_pred ccHHHHhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChhhhcCCCCEEEEEecCCCCcCHHHH
Confidence 00000 000 00000000 0000000 00 001111 2457799999999999998887
Q ss_pred HHHHHHHHhcCCCCCeEEEEecCCCCccCCCc--hHHHHHHHHHHHHHHHH
Q 006375 587 AKFVAKLREMKTDDNILLFKCELGAGHFSKSG--RFERLREAAFTYTFLMR 635 (648)
Q Consensus 587 ~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~~fl~~ 635 (648)
+++.+++. +.++.+++ +++|+.... .....+....+.+||.+
T Consensus 230 ~~l~~~~~----~~~l~~~~---g~~H~~~~~~~~~~~~~~~~~~~~fl~~ 273 (274)
T 2qru_A 230 KKIGRTIP----ESTFKAVY---YLEHDFLKQTKDPSVITLFEQLDSWLKE 273 (274)
T ss_dssp HHHHHHST----TCEEEEEC---SCCSCGGGGTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCC----CcEEEEcC---CCCcCCccCcCCHHHHHHHHHHHHHHhh
Confidence 77776654 45666665 889976322 12222224456788864
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-15 Score=148.80 Aligned_cols=224 Identities=17% Similarity=0.194 Sum_probs=131.1
Q ss_pred EeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhccccc
Q 006375 381 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 460 (648)
Q Consensus 381 ~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 460 (648)
+++.+|.++... . . ++.|.||++||..+.. ..|...+..|+++||.|+++|+||.|.....
T Consensus 3 ~~~~~g~~l~y~----~-~----g~~~~vvllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~-------- 63 (273)
T 1a8s_A 3 FTTRDGTQIYYK----D-W----GSGQPIVFSHGWPLNA--DSWESQMIFLAAQGYRVIAHDRRGHGRSSQP-------- 63 (273)
T ss_dssp EECTTSCEEEEE----E-E----SCSSEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EecCCCcEEEEE----E-c----CCCCEEEEECCCCCcH--HHHhhHHhhHhhCCcEEEEECCCCCCCCCCC--------
Confidence 556788776533 1 1 1347899999965543 3466667788899999999999999876432
Q ss_pred CCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC-CCceeEEEecCCccccccccc-CC-CCCCC-c-
Q 006375 461 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPFVDVLTTML-DP-TIPLT-T- 535 (648)
Q Consensus 461 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~~~a~v~~~~~~d~~~~~~-~~-~~~~~-~- 535 (648)
....+++++.+.+..+++. .+.+++.++|+||||.+++.++.++ |++++++|+..+......... .. ..+.. .
T Consensus 64 ~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 141 (273)
T 1a8s_A 64 WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFD 141 (273)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--hCCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccCccccccCcHHHHH
Confidence 1123556665555555543 2346899999999999998866665 999999998875321110000 00 00000 0
Q ss_pred ----------cc----c---cccCC-----CCCHHHH----------------HH---HHcCCccccCCCCCCCeEEEee
Q 006375 536 ----------AE----W---EEWGD-----PWKEEFY----------------FY---MKSYSPVDNVKAQNYPHILVTA 574 (648)
Q Consensus 536 ----------~~----~---~~~g~-----~~~~~~~----------------~~---~~~~sp~~~~~~~~~P~~li~~ 574 (648)
.. + ..++. ...++.. .. +...+....+.++++| +|+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~ 220 (273)
T 1a8s_A 142 GIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVP-TLVVH 220 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSC-EEEEE
T ss_pred HHHHHhHhhHHHHHHHhhcccccCcCCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhhhhcCCCC-EEEEE
Confidence 00 0 00110 0111110 01 1112223345667898 99999
Q ss_pred cCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 575 GLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 575 g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
|++|..+|+....+.++++.. ..++++++ ++||+......+.+.+ .+.+||.
T Consensus 221 G~~D~~~~~~~~~~~~~~~~~---~~~~~~~~---~~gH~~~~e~p~~~~~--~i~~fl~ 272 (273)
T 1a8s_A 221 GDADQVVPIEASGIASAALVK---GSTLKIYS---GAPHGLTDTHKDQLNA--DLLAFIK 272 (273)
T ss_dssp ETTCSSSCSTTTHHHHHHHST---TCEEEEET---TCCSCHHHHTHHHHHH--HHHHHHH
T ss_pred CCCCccCChHHHHHHHHHhCC---CcEEEEeC---CCCCcchhhCHHHHHH--HHHHHHh
Confidence 999999998865555444422 34556665 8999764444433332 4567774
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.66 E-value=9.6e-15 Score=144.59 Aligned_cols=224 Identities=16% Similarity=0.181 Sum_probs=132.7
Q ss_pred EeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhccccc
Q 006375 381 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 460 (648)
Q Consensus 381 ~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 460 (648)
+++.+|.++.... . ++.|.||++||..+.. ..|...+..|+++||.|+++|.||.|......
T Consensus 3 ~~~~~g~~l~y~~-----~----g~g~~vvllHG~~~~~--~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~------- 64 (274)
T 1a8q_A 3 CTTRDGVEIFYKD-----W----GQGRPVVFIHGWPLNG--DAWQDQLKAVVDAGYRGIAHDRRGHGHSTPVW------- 64 (274)
T ss_dssp EECTTSCEEEEEE-----E----CSSSEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCCS-------
T ss_pred EEccCCCEEEEEe-----c----CCCceEEEECCCcchH--HHHHHHHHHHHhCCCeEEEEcCCCCCCCCCCC-------
Confidence 4567887765431 1 2346899999965543 34666677888899999999999998764321
Q ss_pred CCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC-CCceeEEEecCCccccccccc-CC-CCCCCcc-
Q 006375 461 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPFVDVLTTML-DP-TIPLTTA- 536 (648)
Q Consensus 461 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~~~a~v~~~~~~d~~~~~~-~~-~~~~~~~- 536 (648)
...+++++.+.+..+++. .+.+++.++|+||||.+++.++.++ |++++++|+..+......... .. ..+....
T Consensus 65 -~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 141 (274)
T 1a8q_A 65 -DGYDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVFD 141 (274)
T ss_dssp -SCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHH--cCCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCccccccccCcccchHHHHH
Confidence 123455655555555543 2346899999999999998876665 999999998876421110000 00 0000000
Q ss_pred ---------------cc--cccCC-----CCCHHHHH----------------H---HHcCCccccCCCCCCCeEEEeec
Q 006375 537 ---------------EW--EEWGD-----PWKEEFYF----------------Y---MKSYSPVDNVKAQNYPHILVTAG 575 (648)
Q Consensus 537 ---------------~~--~~~g~-----~~~~~~~~----------------~---~~~~sp~~~~~~~~~P~~li~~g 575 (648)
.+ ..++. ...++... . +...+....+.++++| +|+++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G 220 (274)
T 1a8q_A 142 ALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIP-TLVVHG 220 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSC-EEEEEE
T ss_pred HHHHHhhccHHHHHHHhcccccccccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHhhcCCCC-EEEEec
Confidence 00 00110 01111110 0 1112233456678898 999999
Q ss_pred CCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCc--hHHHHHHHHHHHHHHH
Q 006375 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG--RFERLREAAFTYTFLM 634 (648)
Q Consensus 576 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~~fl~ 634 (648)
++|..+|+....+.++++. ...++++++ ++||+.... ..+.+.+ .+.+||.
T Consensus 221 ~~D~~~~~~~~~~~~~~~~---~~~~~~~~~---~~gH~~~~e~~~p~~~~~--~i~~fl~ 273 (274)
T 1a8q_A 221 DDDQVVPIDATGRKSAQII---PNAELKVYE---GSSHGIAMVPGDKEKFNR--DLLEFLN 273 (274)
T ss_dssp TTCSSSCGGGTHHHHHHHS---TTCEEEEET---TCCTTTTTSTTHHHHHHH--HHHHHHT
T ss_pred CcCCCCCcHHHHHHHHhhC---CCceEEEEC---CCCCceecccCCHHHHHH--HHHHHhc
Confidence 9999999876555544432 234555664 899987665 5554433 4567763
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-15 Score=157.43 Aligned_cols=248 Identities=13% Similarity=0.084 Sum_probs=150.9
Q ss_pred CcceEEEEEeCCC--Ce--EEeEEEEEeeCccccCCCCcEEEEecCCCCC--CCCCCC----------------c-hhHH
Q 006375 373 NYFTERKWASASD--GT--QIPICIVYRKNLVKLDGSDPLLLYGYGSYEI--CNDPAF----------------N-SSRL 429 (648)
Q Consensus 373 ~~~~~~~~~~s~~--g~--~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~--~~~~~~----------------~-~~~~ 429 (648)
.....++.|+|.| |. .+.+.++.|++. ..+.|+|.|.||-.+. .+.+++ . ....
T Consensus 72 ~~~a~ri~Y~std~~G~p~~~~gtv~~P~~~---~~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~ 148 (462)
T 3guu_A 72 NAASFQLQYRTTNTQNEAVADVATVWIPAKP---ASPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIII 148 (462)
T ss_dssp TCEEEEEEEEEECTTSCEEEEEEEEEECSSC---CSSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHH
T ss_pred CceEEEEEEEEECCCCCEEEEEEEEEecCCC---CCCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHH
Confidence 4467788777765 43 377888889875 2358999999994332 222221 1 1235
Q ss_pred HH-HHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC--
Q 006375 430 SL-LDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-- 506 (648)
Q Consensus 430 ~l-~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-- 506 (648)
.| +++||+|+++||+|.|. .|... ... ...+.|.+.++..+. +.....+++++|+|+||..+++++...
T Consensus 149 ~~~l~~G~~Vv~~Dy~G~G~---~y~~~-~~~--~~~vlD~vrAa~~~~--~~~~~~~v~l~G~S~GG~aal~aa~~~~~ 220 (462)
T 3guu_A 149 GWALQQGYYVVSSDHEGFKA---AFIAG-YEE--GMAILDGIRALKNYQ--NLPSDSKVALEGYSGGAHATVWATSLAES 220 (462)
T ss_dssp HHHHHTTCEEEEECTTTTTT---CTTCH-HHH--HHHHHHHHHHHHHHT--TCCTTCEEEEEEETHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCEEEEecCCCCCC---cccCC-cch--hHHHHHHHHHHHHhc--cCCCCCCEEEEeeCccHHHHHHHHHhChh
Confidence 67 89999999999999874 22211 001 012234444443333 322348999999999999998877653
Q ss_pred --CC-ceeEEEecCCccccccccc--CCCCC-------------------------CC------------c---------
Q 006375 507 --PD-LFKAAVAAVPFVDVLTTML--DPTIP-------------------------LT------------T--------- 535 (648)
Q Consensus 507 --p~-~~~a~v~~~~~~d~~~~~~--~~~~~-------------------------~~------------~--------- 535 (648)
|+ .++++++..+..|+..... +.... ++ .
T Consensus 221 yapel~~~g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~ 300 (462)
T 3guu_A 221 YAPELNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVL 300 (462)
T ss_dssp HCTTSEEEEEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHH
T ss_pred hcCccceEEEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHH
Confidence 44 5888888888877543220 10000 00 0
Q ss_pred ----cccccc--C-CC-CCHHHHHHHHcCCccc-----cCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCe
Q 006375 536 ----AEWEEW--G-DP-WKEEFYFYMKSYSPVD-----NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 602 (648)
Q Consensus 536 ----~~~~~~--g-~~-~~~~~~~~~~~~sp~~-----~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~ 602 (648)
.....+ | ++ .++...+.+.....-. --.+.+.| +||+||++|++||+.+++++++++++.|.+.++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~P-vlI~hG~~D~vVP~~~s~~l~~~l~~~G~~V~~ 379 (462)
T 3guu_A 301 TYPFLNVFSLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFP-RFIWHAIPDEIVPYQPAATYVKEQCAKGANINF 379 (462)
T ss_dssp HCTTCCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSE-EEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhccCCHHHHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCC-EEEEeCCCCCcCCHHHHHHHHHHHHHcCCCeEE
Confidence 000000 1 11 1222333333322210 11234666 999999999999999999999999999877665
Q ss_pred EEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCC
Q 006375 603 LLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 603 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
.+++ +.+|... ......+.++||.++|...
T Consensus 380 ~~y~---~~~H~~~-----~~~~~~d~l~WL~~r~~G~ 409 (462)
T 3guu_A 380 SPYP---IAEHLTA-----EIFGLVPSLWFIKQAFDGT 409 (462)
T ss_dssp EEES---SCCHHHH-----HHHTHHHHHHHHHHHHHTC
T ss_pred EEEC---cCCccCc-----hhhhHHHHHHHHHHHhCCC
Confidence 5554 7899532 1223557799999999765
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=154.70 Aligned_cols=190 Identities=15% Similarity=0.099 Sum_probs=127.5
Q ss_pred CcEEEEecCCCCCCCCCCCc-------hhHHHHHHCCCEEEEEccCCCCCCChhhhhcc---------------------
Q 006375 406 DPLLLYGYGSYEICNDPAFN-------SSRLSLLDRGFIFAIAQIRGGGELGRQWYENG--------------------- 457 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~-------~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~--------------------- 457 (648)
.|.||++||+..... .|. ..+..|+++||.|+++|+||.|..+..-....
T Consensus 62 ~~~vvl~HG~g~~~~--~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (328)
T 1qlw_A 62 RYPITLIHGCCLTGM--TWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKLGKAPASSLPDLFAAGHE 139 (328)
T ss_dssp SSCEEEECCTTCCGG--GGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHTTSSCGGGSCCCBCCCHH
T ss_pred CccEEEEeCCCCCCC--ccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCcccccccccccCcccccceeccchh
Confidence 367999999764433 344 35678889999999999999886543211100
Q ss_pred -------cc-cCC---C------CcHhH------------------HHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHH
Q 006375 458 -------KF-LKK---K------NTFTD------------------FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAV 502 (648)
Q Consensus 458 -------~~-~~~---~------~~~~D------------------~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~ 502 (648)
.. .+. . ..+++ +.+++..++++- +++.++|+|+||.+++.+
T Consensus 140 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~lvGhS~GG~~a~~~ 215 (328)
T 1qlw_A 140 AAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL----DGTVLLSHSQSGIYPFQT 215 (328)
T ss_dssp HHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH----TSEEEEEEGGGTTHHHHH
T ss_pred hhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHHh----CCceEEEECcccHHHHHH
Confidence 00 000 0 00333 556666666542 389999999999999999
Q ss_pred HhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccC
Q 006375 503 LNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVM 582 (648)
Q Consensus 503 ~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~ 582 (648)
+.++|++++++|+..|... . .+....+..++| +|++||++|..+|
T Consensus 216 a~~~p~~v~~~v~~~p~~~---------~-------------------------~~~~~~~~~~~P-vLii~G~~D~~~p 260 (328)
T 1qlw_A 216 AAMNPKGITAIVSVEPGEC---------P-------------------------KPEDVKPLTSIP-VLVVFGDHIEEFP 260 (328)
T ss_dssp HHHCCTTEEEEEEESCSCC---------C-------------------------CGGGCGGGTTSC-EEEEECSSCTTCT
T ss_pred HHhChhheeEEEEeCCCCC---------C-------------------------CHHHHhhccCCC-EEEEeccCCcccc
Confidence 9999999999999987531 0 000011123577 9999999999999
Q ss_pred C-----chHHHHHHHHHhcCCCCCeEEEEecC--CCCccCCCch-HHHHHHHHHHHHHHHHhcC
Q 006375 583 Y-----SEPAKFVAKLREMKTDDNILLFKCEL--GAGHFSKSGR-FERLREAAFTYTFLMRALS 638 (648)
Q Consensus 583 ~-----~~~~~~~~~l~~~~~~~~~~~~~~~~--~~gH~~~~~~-~~~~~~~~~~~~fl~~~l~ 638 (648)
+ .++.++++++++++.+.++++++..- +.+|+..... .+.+ ...+.+||.+++.
T Consensus 261 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~--~~~i~~fl~~~~~ 322 (328)
T 1qlw_A 261 RWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQV--ADLILDWIGRNTA 322 (328)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHH--HHHHHHHHHHTCC
T ss_pred chhhHHHHHHHHHHHHHHhCCCceEEEcCCCCcCCCcccchhccCHHHH--HHHHHHHHHhccc
Confidence 7 88999999999888777766665221 3349765443 3322 2356899998875
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.4e-16 Score=144.35 Aligned_cols=182 Identities=17% Similarity=0.189 Sum_probs=120.0
Q ss_pred CCcEEEEecCCCCCCC-CCCCch-hHHHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC
Q 006375 405 SDPLLLYGYGSYEICN-DPAFNS-SRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 481 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~-~~~~~~-~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 481 (648)
+.|+||++||+.+... ...|.. ....|.++ ||.|+++|+||.+. .++...++.+.+.-.
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~------------------~~~~~~~~~~~~~l~ 64 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPIT------------------ARESIWLPFMETELH 64 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTT------------------CCHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCc------------------ccHHHHHHHHHHHhC
Confidence 4689999999766532 233444 45667776 99999999997431 123444455554422
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccc-cCCCCCHHHHHHHHcCCccc
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEE-WGDPWKEEFYFYMKSYSPVD 560 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~sp~~ 560 (648)
. .+++.++|+|+||.+++.++.++| ++++|+.+|........ ...... +..+... .
T Consensus 65 ~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~--------~~~~~~~~~~~~~~------------~ 121 (194)
T 2qs9_A 65 C-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDE--------NERASGYFTRPWQW------------E 121 (194)
T ss_dssp C-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCH--------HHHHTSTTSSCCCH------------H
T ss_pred c-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchh--------hhHHHhhhcccccH------------H
Confidence 2 378999999999999999999998 99999998876432110 000011 1122111 1
Q ss_pred cCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 561 NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 561 ~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
.+.+... |+|+++|++|..||+.++.++.+.+ . .++++++ ++||.......+.+ +.++.||.+....
T Consensus 122 ~~~~~~~-p~lii~G~~D~~vp~~~~~~~~~~~-~----~~~~~~~---~~gH~~~~~~p~~~---~~~~~fl~~~~~~ 188 (194)
T 2qs9_A 122 KIKANCP-YIVQFGSTDDPFLPWKEQQEVADRL-E----TKLHKFT---DCGHFQNTEFHELI---TVVKSLLKVPALE 188 (194)
T ss_dssp HHHHHCS-EEEEEEETTCSSSCHHHHHHHHHHH-T----CEEEEES---SCTTSCSSCCHHHH---HHHHHHHTCCCCC
T ss_pred HHHhhCC-CEEEEEeCCCCcCCHHHHHHHHHhc-C----CeEEEeC---CCCCccchhCHHHH---HHHHHHHHhhhhh
Confidence 1222234 4999999999999999999988887 2 2455665 88998766665544 3456899776554
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=148.63 Aligned_cols=211 Identities=13% Similarity=0.062 Sum_probs=130.9
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCe
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 486 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 486 (648)
|+||++||..+... .|......|+++||.|+++|.||.|...... ....+++++.+.+..+++.-.. .++
T Consensus 5 ~~vv~lHG~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~l~~~l~~l~~-~~~ 74 (258)
T 3dqz_A 5 HHFVLVHNAYHGAW--IWYKLKPLLESAGHRVTAVELAASGIDPRPI-------QAVETVDEYSKPLIETLKSLPE-NEE 74 (258)
T ss_dssp CEEEEECCTTCCGG--GGTTHHHHHHHTTCEEEEECCTTSTTCSSCG-------GGCCSHHHHHHHHHHHHHTSCT-TCC
T ss_pred CcEEEECCCCCccc--cHHHHHHHHHhCCCEEEEecCCCCcCCCCCC-------CccccHHHhHHHHHHHHHHhcc-cCc
Confidence 89999999765443 3667778899999999999999988664321 1124556666666655554321 378
Q ss_pred EEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccC--------CCCCCCccc--------------------c
Q 006375 487 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD--------PTIPLTTAE--------------------W 538 (648)
Q Consensus 487 i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~--------~~~~~~~~~--------------------~ 538 (648)
+.++|+|+||.+++.++.++|++++++|+..|.......... ....+.... +
T Consensus 75 ~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3dqz_A 75 VILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKMGPKFM 154 (258)
T ss_dssp EEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETTEEEEEEECCHHHH
T ss_pred eEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhccChhhhhhhHHHH
Confidence 999999999999999999999999999988875432211000 000000000 0
Q ss_pred -cccCCCCCHHHHHHHH-cC-------------CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeE
Q 006375 539 -EEWGDPWKEEFYFYMK-SY-------------SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 603 (648)
Q Consensus 539 -~~~g~~~~~~~~~~~~-~~-------------sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 603 (648)
..+.....++....+. .. .+.......++| +|+++|++|..+|+..++++.+.+.. .+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~ 229 (258)
T 3dqz_A 155 KARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQ-RVYVMSSEDKAIPCDFIRWMIDNFNV----SKVY 229 (258)
T ss_dssp HHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTGGGSC-EEEEEETTCSSSCHHHHHHHHHHSCC----SCEE
T ss_pred HHHhhccCCHHHHHHHHHhccCCchhhhhhhccccccccccccCC-EEEEECCCCeeeCHHHHHHHHHhCCc----ccEE
Confidence 0000111111111111 11 122222223677 99999999999999888887776642 3566
Q ss_pred EEEecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 604 LFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 604 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
+++ ++||.......+.+.+ .+.+|+.+++
T Consensus 230 ~~~---~~gH~~~~~~p~~~~~--~i~~fl~~~~ 258 (258)
T 3dqz_A 230 EID---GGDHMVMLSKPQKLFD--SLSAIATDYM 258 (258)
T ss_dssp EET---TCCSCHHHHSHHHHHH--HHHHHHHHTC
T ss_pred EcC---CCCCchhhcChHHHHH--HHHHHHHHhC
Confidence 665 8999765444444433 4568887754
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.2e-16 Score=160.97 Aligned_cols=246 Identities=13% Similarity=0.084 Sum_probs=146.8
Q ss_pred EEeCCCCeEEeEEEEEeeCc--cccCCCCcEEEEecCCCCCCCCCCCchhHHHHH----HCCC---EEEEEccCCCCCCC
Q 006375 380 WASASDGTQIPICIVYRKNL--VKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLL----DRGF---IFAIAQIRGGGELG 450 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~--~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~----~~G~---~v~~~~~rG~g~~g 450 (648)
.+.+.||.+|.+..+.|++. ....++.|+||++||..+... .|...+..|+ +.|| .|+++|+||.|...
T Consensus 24 ~~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~~~--~~~~~~~~L~~~~~~~G~~~~~vi~~D~~G~G~S~ 101 (398)
T 2y6u_A 24 TLCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSKV--VWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGDSA 101 (398)
T ss_dssp BSSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCCGG--GGGGGGGGSCCCBTTTTEEEEEEEEECCTTSHHHH
T ss_pred cccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCcHH--HHHHHHHHHHHhhhhcCcceeEEEEEcCCCCCCCC
Confidence 35578999999987776541 012244589999999665443 3555566777 3489 99999999876432
Q ss_pred hhhhhcccccCCCCcHhHHHHHHHHHHHc-C---CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc
Q 006375 451 RQWYENGKFLKKKNTFTDFIACAEYLIKN-C---YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM 526 (648)
Q Consensus 451 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~ 526 (648)
.. ..........+.+....+..+++. . .+++.++.++|+||||.+++.++.++|++++++|+.+|........
T Consensus 102 ~~---~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 178 (398)
T 2y6u_A 102 VR---NRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVVITRKAI 178 (398)
T ss_dssp HH---TTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCCCCC
T ss_pred CC---CccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEecccccccccc
Confidence 21 100011123444444433333332 2 2445569999999999999999999999999999999876642100
Q ss_pred c--CCCCCC----Cc------------------ccc----c--ccCCCCCHHHHHHHHc---------------------
Q 006375 527 L--DPTIPL----TT------------------AEW----E--EWGDPWKEEFYFYMKS--------------------- 555 (648)
Q Consensus 527 ~--~~~~~~----~~------------------~~~----~--~~g~~~~~~~~~~~~~--------------------- 555 (648)
. .+..+. .. ..+ . .+....+++..+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (398)
T 2y6u_A 179 GAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTKME 258 (398)
T ss_dssp SCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC--------CCEEESSC
T ss_pred ccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCccccccccCCCceEecCC
Confidence 0 000000 00 000 0 0111123332222211
Q ss_pred -------C--------CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchH
Q 006375 556 -------Y--------SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRF 620 (648)
Q Consensus 556 -------~--------sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~ 620 (648)
+ .....+.++++| +|+++|++|..||+..+.++.+.+. ..++++++ ++||.......
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vLii~G~~D~~~~~~~~~~l~~~~~----~~~~~~~~---~~gH~~~~e~p 330 (398)
T 2y6u_A 259 QAQNLLCYMNMQTFAPFLISNVKFVRKR-TIHIVGARSNWCPPQNQLFLQKTLQ----NYHLDVIP---GGSHLVNVEAP 330 (398)
T ss_dssp HHHHHHTTSCGGGTHHHHHHHGGGCCSE-EEEEEETTCCSSCHHHHHHHHHHCS----SEEEEEET---TCCTTHHHHSH
T ss_pred chhhhhhhcccccchHHHHHhccccCCC-EEEEEcCCCCCCCHHHHHHHHHhCC----CceEEEeC---CCCccchhcCH
Confidence 0 011345667887 9999999999999988888877764 23455554 88997544333
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 006375 621 ERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 621 ~~~~~~~~~~~fl~~~l~~~ 640 (648)
+.+.+ .+.+||.+++...
T Consensus 331 ~~~~~--~i~~fl~~~~~~~ 348 (398)
T 2y6u_A 331 DLVIE--RINHHIHEFVLTS 348 (398)
T ss_dssp HHHHH--HHHHHHHHHHHHS
T ss_pred HHHHH--HHHHHHHHHHHhH
Confidence 33332 4678998877543
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-15 Score=146.59 Aligned_cols=226 Identities=19% Similarity=0.212 Sum_probs=129.9
Q ss_pred EeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhccccc
Q 006375 381 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 460 (648)
Q Consensus 381 ~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 460 (648)
+++.+|.++..... +. .+.|.||++||..+.. ..|...+..|+++||.|+++|+||.|.....
T Consensus 3 ~~~~~g~~l~y~~~---g~----~~~~~vvllHG~~~~~--~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~-------- 65 (275)
T 1a88_A 3 VTTSDGTNIFYKDW---GP----RDGLPVVFHHGWPLSA--DDWDNQMLFFLSHGYRVIAHDRRGHGRSDQP-------- 65 (275)
T ss_dssp EECTTSCEEEEEEE---SC----TTSCEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EEccCCCEEEEEEc---CC----CCCceEEEECCCCCch--hhHHHHHHHHHHCCceEEEEcCCcCCCCCCC--------
Confidence 45678887754322 11 1347899999965443 3466667788899999999999999876432
Q ss_pred CCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC-CCceeEEEecCCccccccccc-CC-CCCCC---
Q 006375 461 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPFVDVLTTML-DP-TIPLT--- 534 (648)
Q Consensus 461 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~~~a~v~~~~~~d~~~~~~-~~-~~~~~--- 534 (648)
....+++++.+.+..+++. .+.+++.++|+||||.+++.++.++ |++++++|+..+......... .+ ..+..
T Consensus 66 ~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 143 (275)
T 1a88_A 66 STGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVFD 143 (275)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--cCCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCCcccccCccCcccCCHHHHH
Confidence 1123455555544444443 1236899999999999998877666 999999998876432110000 00 00000
Q ss_pred ---------c----ccc---cccCC-----CCCHHHHH----------------H---HHcCCccccCCCCCCCeEEEee
Q 006375 535 ---------T----AEW---EEWGD-----PWKEEFYF----------------Y---MKSYSPVDNVKAQNYPHILVTA 574 (648)
Q Consensus 535 ---------~----~~~---~~~g~-----~~~~~~~~----------------~---~~~~sp~~~~~~~~~P~~li~~ 574 (648)
. ..+ ..++. ...++... . +...+....+.++++| +|+++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~ 222 (275)
T 1a88_A 144 EFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVP-VLVAH 222 (275)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSC-EEEEE
T ss_pred HHHHHHhhhHHHHHHhhhccccccccCcccccCHHHHHHHHHHhhhcchHhHHHHHhhhhhcccccccccCCCC-EEEEe
Confidence 0 000 00110 01111111 0 1111222345567898 99999
Q ss_pred cCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 575 GLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 575 g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
|++|..+|+....+.++++.. ..++++++ ++||+......+.+.+ .+.+||.
T Consensus 223 G~~D~~~~~~~~~~~~~~~~~---~~~~~~~~---~~gH~~~~e~p~~~~~--~i~~fl~ 274 (275)
T 1a88_A 223 GTDDQVVPYADAAPKSAELLA---NATLKSYE---GLPHGMLSTHPEVLNP--DLLAFVK 274 (275)
T ss_dssp ETTCSSSCSTTTHHHHHHHST---TEEEEEET---TCCTTHHHHCHHHHHH--HHHHHHH
T ss_pred cCCCccCCcHHHHHHHHhhCC---CcEEEEcC---CCCccHHHhCHHHHHH--HHHHHhh
Confidence 999999998855554444321 33455554 8999764444443332 4567764
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=147.95 Aligned_cols=215 Identities=16% Similarity=0.131 Sum_probs=133.9
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 459 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 459 (648)
.+.+.+|.++..... ++.|+||++||..+... .|......|. +||.|+++|+||.|.....
T Consensus 6 ~~~~~~g~~l~~~~~---------g~~~~vv~lHG~~~~~~--~~~~~~~~l~-~~~~vi~~d~~G~G~S~~~------- 66 (262)
T 3r0v_A 6 TVPSSDGTPIAFERS---------GSGPPVVLVGGALSTRA--GGAPLAERLA-PHFTVICYDRRGRGDSGDT------- 66 (262)
T ss_dssp EEECTTSCEEEEEEE---------ECSSEEEEECCTTCCGG--GGHHHHHHHT-TTSEEEEECCTTSTTCCCC-------
T ss_pred eEEcCCCcEEEEEEc---------CCCCcEEEECCCCcChH--HHHHHHHHHh-cCcEEEEEecCCCcCCCCC-------
Confidence 355678887765421 12478999999765543 3555566666 8999999999998865432
Q ss_pred cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCC-----
Q 006375 460 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLT----- 534 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~----- 534 (648)
...+++|+.+.+..+++. .+ +++.++|+|+||.+++.++.++| .++++|+..|..............+.
T Consensus 67 --~~~~~~~~~~~~~~~~~~--l~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 140 (262)
T 3r0v_A 67 --PPYAVEREIEDLAAIIDA--AG-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPVPPDYQTRLDA 140 (262)
T ss_dssp --SSCCHHHHHHHHHHHHHH--TT-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCCCTTHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHh--cC-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchhhhHHHHHHHH
Confidence 134567777766666654 23 79999999999999999999999 99999999887654322100000000
Q ss_pred ------cc----cc-cc-cCCCCCHHHHHHHHc------------------------CCccccCCCCCCCeEEEeecCCC
Q 006375 535 ------TA----EW-EE-WGDPWKEEFYFYMKS------------------------YSPVDNVKAQNYPHILVTAGLND 578 (648)
Q Consensus 535 ------~~----~~-~~-~g~~~~~~~~~~~~~------------------------~sp~~~~~~~~~P~~li~~g~~D 578 (648)
.. .+ .. .+.+ ++..+.+.. ..+...+.++++| +|+++|++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D 217 (262)
T 3r0v_A 141 LLAEGRRGDAVTYFMTEGVGVP--PDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIP-TLVMDGGAS 217 (262)
T ss_dssp HHHTTCHHHHHHHHHHHTSCCC--HHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSC-EEEEECTTC
T ss_pred HhhccchhhHHHHHhhcccCCC--HHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCC-EEEEeecCC
Confidence 00 00 00 1111 111111110 1234456677888 999999999
Q ss_pred CccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 579 PRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
..+|+..+.++.+.+.. .++++++ ++||.. ..+.+.+ .+.+||.
T Consensus 218 ~~~~~~~~~~~~~~~~~----~~~~~~~---~~gH~~---~p~~~~~--~i~~fl~ 261 (262)
T 3r0v_A 218 PAWIRHTAQELADTIPN----ARYVTLE---NQTHTV---APDAIAP--VLVEFFT 261 (262)
T ss_dssp CHHHHHHHHHHHHHSTT----EEEEECC---CSSSSC---CHHHHHH--HHHHHHC
T ss_pred CCCCHHHHHHHHHhCCC----CeEEEec---CCCccc---CHHHHHH--HHHHHHh
Confidence 99998888888776643 2444554 889942 3333322 4456664
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-16 Score=149.75 Aligned_cols=191 Identities=16% Similarity=0.120 Sum_probs=124.4
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCch--hHHHHHHCCCEEEEEccCCCCCCChhhhhcccccC
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS--SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK 461 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~--~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 461 (648)
.+|.++....+.|++. ++.|+||++||+.+... .|.. ....|+++||.|+++|+||.|....... ...
T Consensus 14 ~~g~~l~~~~~~p~~~----~~~~~vv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~----~~~ 83 (210)
T 1imj_A 14 VQGQALFFREALPGSG----QARFSVLLLHGIRFSSE--TWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAA----PAP 83 (210)
T ss_dssp ETTEEECEEEEECSSS----CCSCEEEECCCTTCCHH--HHHHHTHHHHHHHTTCEEEEECCTTSGGGTTSCC----SSC
T ss_pred eCCeEEEEEEeCCCCC----CCCceEEEECCCCCccc--eeecchhHHHHHHCCCeEEEecCCCCCCCCCCCC----cch
Confidence 3788899987766542 45799999999765432 3444 3667888999999999998775432210 001
Q ss_pred CCCcH--hHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCccccc
Q 006375 462 KKNTF--TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE 539 (648)
Q Consensus 462 ~~~~~--~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 539 (648)
-.... +|+.+.++.+ +.+++.++|+|+||.+++.++.++|+.++++|+.+|......
T Consensus 84 ~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~--------------- 142 (210)
T 1imj_A 84 IGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI--------------- 142 (210)
T ss_dssp TTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGS---------------
T ss_pred hhhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCccccc---------------
Confidence 11111 4555555544 236899999999999999999999999999999988643110
Q ss_pred ccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCch
Q 006375 540 EWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGR 619 (648)
Q Consensus 540 ~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~ 619 (648)
. ...+.++++| +|+++|++|. +++..+.++ +.+. ..+.++++ ++||......
T Consensus 143 ------~------------~~~~~~~~~p-~l~i~g~~D~-~~~~~~~~~-~~~~----~~~~~~~~---~~~H~~~~~~ 194 (210)
T 1imj_A 143 ------N------------AANYASVKTP-ALIVYGDQDP-MGQTSFEHL-KQLP----NHRVLIMK---GAGHPCYLDK 194 (210)
T ss_dssp ------C------------HHHHHTCCSC-EEEEEETTCH-HHHHHHHHH-TTSS----SEEEEEET---TCCTTHHHHC
T ss_pred ------c------------chhhhhCCCC-EEEEEcCccc-CCHHHHHHH-hhCC----CCCEEEec---CCCcchhhcC
Confidence 0 0112344677 9999999999 987766655 4332 33444554 8899753322
Q ss_pred HHHHHHHHHHHHHHHH
Q 006375 620 FERLREAAFTYTFLMR 635 (648)
Q Consensus 620 ~~~~~~~~~~~~fl~~ 635 (648)
.+.+ ...+.+||.+
T Consensus 195 ~~~~--~~~i~~fl~~ 208 (210)
T 1imj_A 195 PEEW--HTGLLDFLQG 208 (210)
T ss_dssp HHHH--HHHHHHHHHT
T ss_pred HHHH--HHHHHHHHHh
Confidence 2222 2244566653
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=146.16 Aligned_cols=216 Identities=15% Similarity=0.142 Sum_probs=129.6
Q ss_pred cceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHH--CCCEEEEEccCCC-----
Q 006375 374 YFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD--RGFIFAIAQIRGG----- 446 (648)
Q Consensus 374 ~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~--~G~~v~~~~~rG~----- 446 (648)
+..+.+.+.+. .+...++.|+.. ..++||++||..+... .+......|.. .++.+++|+-.-.
T Consensus 13 ~~~~~~~~~~~---~l~y~ii~P~~~-----~~~~VI~LHG~G~~~~--dl~~l~~~l~~~~~~~~~i~P~Ap~~~~~~~ 82 (246)
T 4f21_A 13 LGTENLYFQSN---AMNYELMEPAKQ-----ARFCVIWLHGLGADGH--DFVDIVNYFDVSLDEIRFIFPHADIIPVTIN 82 (246)
T ss_dssp ----------C---CCCEEEECCSSC-----CCEEEEEEEC--CCCC--CGGGGGGGCCSCCTTEEEEEECGGGSCTTTH
T ss_pred cccceEEEecC---CcCceEeCCCCc-----CCeEEEEEcCCCCCHH--HHHHHHHHhhhcCCCeEEEeCCCCccccccC
Confidence 34555666543 355666766542 3579999999433322 23333333322 2688888875321
Q ss_pred -CCCChhhhhcccccC-------CCCcHhHHHHHHHHHHH---cCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEe
Q 006375 447 -GELGRQWYENGKFLK-------KKNTFTDFIACAEYLIK---NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 515 (648)
Q Consensus 447 -g~~g~~~~~~~~~~~-------~~~~~~D~~~~~~~l~~---~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~ 515 (648)
+..|..|+....... ....+....+.++.+++ +..++++||++.|+|+||.+++.++.++|+.|+++|+
T Consensus 83 ~~~~~~~Wf~~~~~~~~~~~~~~d~~~i~~~~~~i~~li~~~~~~gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~ 162 (246)
T 4f21_A 83 MGMQMRAWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATYTAITSQRKLGGIMA 162 (246)
T ss_dssp HHHHHHSCTTCCCC---CGGGGSCCC-CHHHHHHHHHHHHHHHHC-CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEE
T ss_pred CCCCcccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCChhcEEEEEeCchHHHHHHHHHhCcccccccee
Confidence 112445654321110 11223333333433332 2348999999999999999999999999999999999
Q ss_pred cCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHh
Q 006375 516 AVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLRE 595 (648)
Q Consensus 516 ~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~ 595 (648)
.+|.+....... ...++. ..+.| +|++||++|++||+..+++.++.|++
T Consensus 163 ~sG~lp~~~~~~--------------------------~~~~~~----~~~~P-vl~~HG~~D~vVp~~~~~~~~~~L~~ 211 (246)
T 4f21_A 163 LSTYLPAWDNFK--------------------------GKITSI----NKGLP-ILVCHGTDDQVLPEVLGHDLSDKLKV 211 (246)
T ss_dssp ESCCCTTHHHHS--------------------------TTCCGG----GTTCC-EEEEEETTCSSSCHHHHHHHHHHHHT
T ss_pred hhhccCcccccc--------------------------cccccc----ccCCc-hhhcccCCCCccCHHHHHHHHHHHHH
Confidence 988643211100 000110 12456 99999999999999999999999999
Q ss_pred cCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 596 MKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 596 ~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
+|.+.++..|+ +.||... .+ ++.++.+||.++|.+
T Consensus 212 ~g~~v~~~~y~---g~gH~i~---~~---~l~~~~~fL~k~l~l 246 (246)
T 4f21_A 212 SGFANEYKHYV---GMQHSVC---ME---EIKDISNFIAKTFKI 246 (246)
T ss_dssp TTCCEEEEEES---SCCSSCC---HH---HHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEEC---CCCCccC---HH---HHHHHHHHHHHHhCC
Confidence 99886655554 8899653 22 344678999999874
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9.6e-15 Score=155.81 Aligned_cols=231 Identities=15% Similarity=0.112 Sum_probs=139.7
Q ss_pred EEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcc
Q 006375 378 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG 457 (648)
Q Consensus 378 ~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~ 457 (648)
.+...+.+|.+|... .. ++.|+||++||+.+... .|...+..|+++||.|+++|+||.|.....
T Consensus 5 ~~~~~~~dG~~l~y~---~~------G~gp~VV~lHG~~~~~~--~~~~l~~~La~~Gy~Vi~~D~rG~G~S~~~----- 68 (456)
T 3vdx_A 5 TVGQENSTSIDLYYE---DH------GTGVPVVLIHGFPLSGH--SWERQSAALLDAGYRVITYDRRGFGQSSQP----- 68 (456)
T ss_dssp EEEEETTEEEEEEEE---EE------SSSEEEEEECCTTCCGG--GGTTHHHHHHHHTEEEEEECCTTSTTSCCC-----
T ss_pred eecccccCCeEEEEE---Ee------CCCCEEEEECCCCCcHH--HHHHHHHHHHHCCcEEEEECCCCCCCCCCC-----
Confidence 345566777766532 11 24589999999765543 356667788889999999999998866432
Q ss_pred cccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC-CCceeEEEecCCcccccccccCCCCCCCcc
Q 006375 458 KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPFVDVLTTMLDPTIPLTTA 536 (648)
Q Consensus 458 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~ 536 (648)
.....++++.+.+..+++. ++.+++.++|+|+||.+++.++.++ |+.++++|+.+|..................
T Consensus 69 ---~~~~s~~~~a~dl~~~l~~--l~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~~~~~~~~~~~~~~~~ 143 (456)
T 3vdx_A 69 ---TTGYDYDTFAADLNTVLET--LDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAAPQ 143 (456)
T ss_dssp ---SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCSCCBCCSSCCSCSBCH
T ss_pred ---CCCCCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcccccccccccccccchH
Confidence 1123455555444444433 2446899999999999888877776 899999999998765432211000000000
Q ss_pred -------------------c-ccc-cCC------CCCHHHHHHH----------------H--cCCccccCCCCCCCeEE
Q 006375 537 -------------------E-WEE-WGD------PWKEEFYFYM----------------K--SYSPVDNVKAQNYPHIL 571 (648)
Q Consensus 537 -------------------~-~~~-~g~------~~~~~~~~~~----------------~--~~sp~~~~~~~~~P~~l 571 (648)
. +.. +.. ...++..... . ..+....+.++++| +|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P-vL 222 (456)
T 3vdx_A 144 EFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVP-AL 222 (456)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHTTTTTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTCCCTTTSTTCCSC-CE
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHhcccccccccccHHHHHHHhhhccccchhhhhhhhhhhhhhHHHHhhhCCCC-EE
Confidence 0 000 000 1111111100 0 11233456677888 99
Q ss_pred EeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 572 VTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 572 i~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
+++|++|..||+.+..+.++++. ...++++++ ++||.......+.+.+ .+.+||.++++
T Consensus 223 iI~G~~D~~vp~~~~~~~l~~~~---~~~~~~~i~---gagH~~~~e~p~~v~~--~I~~FL~~~l~ 281 (456)
T 3vdx_A 223 ILHGTGDRTLPIENTARVFHKAL---PSAEYVEVE---GAPHGLLWTHAEEVNT--ALLAFLAKALE 281 (456)
T ss_dssp EEEETTCSSSCGGGTHHHHHHHC---TTSEEEEET---TCCSCTTTTTHHHHHH--HHHHHHHHHHH
T ss_pred EEEeCCCCCcCHHHHHHHHHHHC---CCceEEEeC---CCCCcchhhCHHHHHH--HHHHHHHHhhc
Confidence 99999999999884444444432 234556665 8899876555544333 46788888763
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-16 Score=155.83 Aligned_cols=212 Identities=12% Similarity=0.070 Sum_probs=131.1
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
..|+||++||..+... .|...+..|.+ ||.|+++|+||.|....... ......+++++.+.+..+++. .+.
T Consensus 19 ~~p~vv~~HG~~~~~~--~~~~~~~~l~~-g~~v~~~D~~G~G~S~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~ 89 (269)
T 4dnp_A 19 GERVLVLAHGFGTDQS--AWNRILPFFLR-DYRVVLYDLVCAGSVNPDFF----DFRRYTTLDPYVDDLLHILDA--LGI 89 (269)
T ss_dssp CSSEEEEECCTTCCGG--GGTTTGGGGTT-TCEEEEECCTTSTTSCGGGC----CTTTCSSSHHHHHHHHHHHHH--TTC
T ss_pred CCCEEEEEeCCCCcHH--HHHHHHHHHhC-CcEEEEEcCCCCCCCCCCCC----CccccCcHHHHHHHHHHHHHh--cCC
Confidence 4589999999655432 35555556666 99999999999887643211 111223566777666666654 234
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCC-CCCCC------------cccc-----c-ccCCCC
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP-TIPLT------------TAEW-----E-EWGDPW 545 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~-~~~~~------------~~~~-----~-~~g~~~ 545 (648)
+++.++|+|+||.+++.++.++|++++++|+..|........... ..... ...+ . ..+. .
T Consensus 90 ~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 168 (269)
T 4dnp_A 90 DCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGA-D 168 (269)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCS-S
T ss_pred CeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHHHHHHHhhhhhccC-C
Confidence 689999999999999999999999999999999865432211000 00000 0000 0 0011 1
Q ss_pred CHH-------------------HHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEE
Q 006375 546 KEE-------------------FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 606 (648)
Q Consensus 546 ~~~-------------------~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 606 (648)
.++ ....+...+....+.++++| +|+++|++|..+|+..+.++.+.+... .++++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~---~~~~~~~ 244 (269)
T 4dnp_A 169 VPAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVP-CHIFQTARDHSVPASVATYLKNHLGGK---NTVHWLN 244 (269)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSC-EEEEEEESBTTBCHHHHHHHHHHSSSC---EEEEEEE
T ss_pred ChhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCC-EEEEecCCCcccCHHHHHHHHHhCCCC---ceEEEeC
Confidence 111 11112233445566777898 999999999999998888887776431 4556666
Q ss_pred ecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 607 CELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 607 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
++||.......+.+.+ .+.+||.+
T Consensus 245 ---~~gH~~~~~~p~~~~~--~i~~fl~~ 268 (269)
T 4dnp_A 245 ---IEGHLPHLSAPTLLAQ--ELRRALSH 268 (269)
T ss_dssp ---EESSCHHHHCHHHHHH--HHHHHHC-
T ss_pred ---CCCCCccccCHHHHHH--HHHHHHhh
Confidence 7899754333333222 45667654
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-15 Score=146.62 Aligned_cols=120 Identities=16% Similarity=0.169 Sum_probs=83.7
Q ss_pred EeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhccccc
Q 006375 381 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 460 (648)
Q Consensus 381 ~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 460 (648)
+++.+|.+|..... +. .+.|.||++||..+.. ..|...+..|+++||.|+++|+||.|.....
T Consensus 4 ~~~~~g~~l~y~~~---g~----~~~~~vvllHG~~~~~--~~w~~~~~~L~~~g~~vi~~D~~G~G~S~~~-------- 66 (276)
T 1zoi_A 4 VTTKDGVQIFYKDW---GP----RDAPVIHFHHGWPLSA--DDWDAQLLFFLAHGYRVVAHDRRGHGRSSQV-------- 66 (276)
T ss_dssp EECTTSCEEEEEEE---SC----TTSCEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EECCCCcEEEEEec---CC----CCCCeEEEECCCCcch--hHHHHHHHHHHhCCCEEEEecCCCCCCCCCC--------
Confidence 45678887754422 11 1247899999965543 3467777888899999999999999876432
Q ss_pred CCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC-CCceeEEEecCCc
Q 006375 461 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPF 519 (648)
Q Consensus 461 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~~~a~v~~~~~ 519 (648)
....+++++.+.+..+++. .+.+++.++|+||||.+++.+++++ |++++++|+..+.
T Consensus 67 ~~~~~~~~~~~d~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 124 (276)
T 1zoi_A 67 WDGHDMDHYADDVAAVVAH--LGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAV 124 (276)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCC
T ss_pred CCCCCHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCC
Confidence 1123455555544444433 1236899999999999998877776 9999999988764
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=149.56 Aligned_cols=198 Identities=14% Similarity=0.127 Sum_probs=124.7
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
+.|+||++||..+.... |......|.+ ||.|+++|+||.|.....- .....+++|+.+.+..+++.- +.
T Consensus 22 ~~~~vv~~HG~~~~~~~--~~~~~~~L~~-~~~vi~~d~~G~G~s~~~~------~~~~~~~~~~~~~~~~~~~~l--~~ 90 (278)
T 3oos_A 22 EGPPLCVTHLYSEYNDN--GNTFANPFTD-HYSVYLVNLKGCGNSDSAK------NDSEYSMTETIKDLEAIREAL--YI 90 (278)
T ss_dssp SSSEEEECCSSEECCTT--CCTTTGGGGG-TSEEEEECCTTSTTSCCCS------SGGGGSHHHHHHHHHHHHHHT--TC
T ss_pred CCCeEEEEcCCCcchHH--HHHHHHHhhc-CceEEEEcCCCCCCCCCCC------CcccCcHHHHHHHHHHHHHHh--CC
Confidence 45789999997655443 4554556665 9999999999988653321 111235677777776666552 34
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCC-CCC---cccc----cc----------------
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI-PLT---TAEW----EE---------------- 540 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~-~~~---~~~~----~~---------------- 540 (648)
+++.++|+|+||.+++.++.++|++++++|+..|............. ... ...+ ..
T Consensus 91 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (278)
T 3oos_A 91 NKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNRIVSIMNALNDDSTVQEERKALSR 170 (278)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTTSTTSTTSTTHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccchhhhhhchhHHHHHHHHHhhcccccCchHHHHHHH
Confidence 68999999999999999999999999999999988761111000000 000 0000 00
Q ss_pred ----------------cCCCC----CHHHHHHHH-----cCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHh
Q 006375 541 ----------------WGDPW----KEEFYFYMK-----SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLRE 595 (648)
Q Consensus 541 ----------------~g~~~----~~~~~~~~~-----~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~ 595 (648)
+..+. .......+. .++....+.++++| +|+++|++|..+|+..+.++.+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~l~i~g~~D~~~~~~~~~~~~~~~~- 248 (278)
T 3oos_A 171 EWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIP-SFIYCGKHDVQCPYIFSCEIANLIP- 248 (278)
T ss_dssp HHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHHHHTTCCSC-EEEEEETTCSSSCHHHHHHHHHHST-
T ss_pred HHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHHHHhCCCCC-EEEEEeccCCCCCHHHHHHHHhhCC-
Confidence 00110 001111112 23344556677888 9999999999999988888877763
Q ss_pred cCCCCCeEEEEecCCCCccCCCchHH
Q 006375 596 MKTDDNILLFKCELGAGHFSKSGRFE 621 (648)
Q Consensus 596 ~~~~~~~~~~~~~~~~gH~~~~~~~~ 621 (648)
..++++++ ++||+......+
T Consensus 249 ---~~~~~~~~---~~gH~~~~~~p~ 268 (278)
T 3oos_A 249 ---NATLTKFE---ESNHNPFVEEID 268 (278)
T ss_dssp ---TEEEEEET---TCSSCHHHHSHH
T ss_pred ---CcEEEEcC---CcCCCcccccHH
Confidence 23455554 889976444333
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-15 Score=146.69 Aligned_cols=206 Identities=15% Similarity=0.137 Sum_probs=125.2
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCe
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 486 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 486 (648)
|.||++||..+.. ..|...+..|+++||.|+++|.||.|..... ....+++++.+.+..+++. .+.++
T Consensus 24 ~pvvllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~--------~~~~~~~~~a~dl~~~l~~--l~~~~ 91 (277)
T 1brt_A 24 QPVVLIHGFPLSG--HSWERQSAALLDAGYRVITYDRRGFGQSSQP--------TTGYDYDTFAADLNTVLET--LDLQD 91 (277)
T ss_dssp SEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------SSCCSHHHHHHHHHHHHHH--HTCCS
T ss_pred CeEEEECCCCCcH--HHHHHHHHHHhhCCCEEEEeCCCCCCCCCCC--------CCCccHHHHHHHHHHHHHH--hCCCc
Confidence 4599999966543 3467777888889999999999998876431 1123455555555544443 12368
Q ss_pred EEEEeeChhHHHHHHHHhhCCC-ceeEEEecCCccccccccc-CCC--CCCC------------ccc----c--ccc---
Q 006375 487 LCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAVPFVDVLTTML-DPT--IPLT------------TAE----W--EEW--- 541 (648)
Q Consensus 487 i~i~G~S~GG~l~~~~~~~~p~-~~~a~v~~~~~~d~~~~~~-~~~--~~~~------------~~~----~--~~~--- 541 (648)
+.++|+||||.+++.++.++|+ +++++|+..|......... .+. .+.. ... + ..+
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (277)
T 1brt_A 92 AVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLD 171 (277)
T ss_dssp EEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTHH
T ss_pred eEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccccccHHHHHHHHHHHhcCchhhHHHHHHHHhhcc
Confidence 9999999999999999999999 9999999887432111000 000 0000 000 0 001
Q ss_pred ---CCCCCHHHHHHH----------------H--cCCccccCCCCCCCeEEEeecCCCCccCCchH-HHHHHHHHhcCCC
Q 006375 542 ---GDPWKEEFYFYM----------------K--SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEP-AKFVAKLREMKTD 599 (648)
Q Consensus 542 ---g~~~~~~~~~~~----------------~--~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~-~~~~~~l~~~~~~ 599 (648)
+....++....+ . ..+....+.++++| +|+++|++|..+|+..+ .++.+.+. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~~~~~~----~ 246 (277)
T 1brt_A 172 ENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVP-ALILHGTGDRTLPIENTARVFHKALP----S 246 (277)
T ss_dssp HHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSC-EEEEEETTCSSSCGGGTHHHHHHHCT----T
T ss_pred ccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhcccCCCC-eEEEecCCCccCChHHHHHHHHHHCC----C
Confidence 111122211110 0 11222345667898 99999999999999887 77766653 2
Q ss_pred CCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 600 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 600 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
.++++++ ++||.......+.+.+ .+.+||.
T Consensus 247 ~~~~~i~---~~gH~~~~e~p~~~~~--~i~~fl~ 276 (277)
T 1brt_A 247 AEYVEVE---GAPHGLLWTHAEEVNT--ALLAFLA 276 (277)
T ss_dssp SEEEEET---TCCTTHHHHTHHHHHH--HHHHHHH
T ss_pred CcEEEeC---CCCcchhhhCHHHHHH--HHHHHHh
Confidence 4455664 8999764444443332 4567764
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-15 Score=145.64 Aligned_cols=207 Identities=14% Similarity=0.096 Sum_probs=122.6
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCC-cHhHHHHHHHHHHHcCCCCCC
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN-TFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~ 485 (648)
|.||++||..+.. ...|...+..|+++||.|+++|+||.|.....- ...... ..+|+.++++++...+ .+
T Consensus 24 ~~vvllHG~~~~~-~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-----~~~~~~~~~~~~~~~~~~l~~l~---~~ 94 (254)
T 2ocg_A 24 HAVLLLPGMLGSG-ETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPD-----RDFPADFFERDAKDAVDLMKALK---FK 94 (254)
T ss_dssp EEEEEECCTTCCH-HHHCHHHHHHSCTTTEEEEEECCTTSTTCCSSC-----CCCCTTHHHHHHHHHHHHHHHTT---CS
T ss_pred CeEEEECCCCCCC-ccchHHHHHHHhhCCCeEEEECCCCCCCCCCCC-----CCCChHHHHHHHHHHHHHHHHhC---CC
Confidence 6899999965531 223566667788889999999999988653210 000001 1234555556665543 36
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc--cCCCCCCCcccc---------cccCCCCCH----HHH
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM--LDPTIPLTTAEW---------EEWGDPWKE----EFY 550 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~--~~~~~~~~~~~~---------~~~g~~~~~----~~~ 550 (648)
++.++|+||||.+++.++.++|++++++|+..|........ ....... ...| ..++..... ...
T Consensus 95 ~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (254)
T 2ocg_A 95 KVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRD-VSKWSERTRKPLEALYGYDYFARTCEKWV 173 (254)
T ss_dssp SEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSC-GGGSCHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHH-HHHHHHHhHHHHHHHhcchhhHHHHHHHH
Confidence 89999999999999999999999999999887643211000 0000000 0000 001110000 000
Q ss_pred HHHHcC-------CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHH
Q 006375 551 FYMKSY-------SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERL 623 (648)
Q Consensus 551 ~~~~~~-------sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~ 623 (648)
..+..+ .....+.++++| +|+++|++|..+|+..+.++.+.+. ..++++++ ++||.......+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~---~~gH~~~~e~p~~~ 245 (254)
T 2ocg_A 174 DGIRQFKHLPDGNICRHLLPRVQCP-ALIVHGEKDPLVPRFHADFIHKHVK----GSRLHLMP---EGKHNLHLRFADEF 245 (254)
T ss_dssp HHHHGGGGSGGGBSSGGGGGGCCSC-EEEEEETTCSSSCHHHHHHHHHHST----TCEEEEET---TCCTTHHHHTHHHH
T ss_pred HHHHHHHhccCCchhhhhhhcccCC-EEEEecCCCccCCHHHHHHHHHhCC----CCEEEEcC---CCCCchhhhCHHHH
Confidence 111111 112345677898 9999999999999888877776654 23455554 89997654444433
Q ss_pred HHHHHHHHHH
Q 006375 624 REAAFTYTFL 633 (648)
Q Consensus 624 ~~~~~~~~fl 633 (648)
.+ .+.+||
T Consensus 246 ~~--~i~~fl 253 (254)
T 2ocg_A 246 NK--LAEDFL 253 (254)
T ss_dssp HH--HHHHHH
T ss_pred HH--HHHHHh
Confidence 33 345665
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-14 Score=142.56 Aligned_cols=208 Identities=18% Similarity=0.221 Sum_probs=123.8
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||..+... .|......|+++||.|+++|+||.|...... ...+++++.+.+..+++.- +.+
T Consensus 27 g~~vvllHG~~~~~~--~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~--------~~~~~~~~a~dl~~ll~~l--~~~ 94 (281)
T 3fob_A 27 GKPVVLIHGWPLSGR--SWEYQVPALVEAGYRVITYDRRGFGKSSQPW--------EGYEYDTFTSDLHQLLEQL--ELQ 94 (281)
T ss_dssp SEEEEEECCTTCCGG--GGTTTHHHHHHTTEEEEEECCTTSTTSCCCS--------SCCSHHHHHHHHHHHHHHT--TCC
T ss_pred CCeEEEECCCCCcHH--HHHHHHHHHHhCCCEEEEeCCCCCCCCCCCc--------cccCHHHHHHHHHHHHHHc--CCC
Confidence 467889999766543 3556677888899999999999998764321 2245666666666665542 336
Q ss_pred eEEEEeeChhHHHHHHHHhh-CCCceeEEEecCCccccccccc-CCCCCCCc------------------ccc-c-ccC-
Q 006375 486 KLCIEGRSAGGLLIGAVLNM-RPDLFKAAVAAVPFVDVLTTML-DPTIPLTT------------------AEW-E-EWG- 542 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~-~p~~~~a~v~~~~~~d~~~~~~-~~~~~~~~------------------~~~-~-~~g- 542 (648)
++.++|+||||.+++.++.+ .|++++++|+..+......... .+...... ..+ . .+.
T Consensus 95 ~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (281)
T 3fob_A 95 NVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFAA 174 (281)
T ss_dssp SEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSSTTCSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCB
T ss_pred cEEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhccccccccccchhHHHHHHHHhhhhHHHHHHHHHHHhccc
Confidence 89999999999877765554 5899999998775422110000 00000000 000 0 000
Q ss_pred ----CCCCHHH-------------------HHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCC
Q 006375 543 ----DPWKEEF-------------------YFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599 (648)
Q Consensus 543 ----~~~~~~~-------------------~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~ 599 (648)
....+.. ...+...+....+.++++| +||++|++|..+|+..+.++.++.. ..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P-~Lii~G~~D~~~p~~~~~~~~~~~~---p~ 250 (281)
T 3fob_A 175 GDRTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIP-TLIIHGDSDATVPFEYSGKLTHEAI---PN 250 (281)
T ss_dssp TTBCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHHHTTCCSC-EEEEEETTCSSSCGGGTHHHHHHHS---TT
T ss_pred ccccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhhhhhcCCC-EEEEecCCCCCcCHHHHHHHHHHhC---CC
Confidence 0111111 1111122333456778998 9999999999999987745443332 23
Q ss_pred CCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 600 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 600 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
.++++++ ++||+.....++.+.+ .+.+||.
T Consensus 251 ~~~~~i~---~~gH~~~~e~p~~~~~--~i~~Fl~ 280 (281)
T 3fob_A 251 SKVALIK---GGPHGLNATHAKEFNE--ALLLFLK 280 (281)
T ss_dssp CEEEEET---TCCTTHHHHTHHHHHH--HHHHHHC
T ss_pred ceEEEeC---CCCCchhhhhHHHHHH--HHHHHhh
Confidence 4566665 8999765444544443 3466663
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-16 Score=154.98 Aligned_cols=213 Identities=12% Similarity=0.097 Sum_probs=132.7
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|+||++||..+... .|...+..|.+ ||.|+++|+||.|........ .....+++++.+.+..+++.- +.+
T Consensus 28 ~~~vv~lHG~~~~~~--~~~~~~~~l~~-g~~v~~~d~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~ 98 (282)
T 3qvm_A 28 EKTVLLAHGFGCDQN--MWRFMLPELEK-QFTVIVFDYVGSGQSDLESFS----TKRYSSLEGYAKDVEEILVAL--DLV 98 (282)
T ss_dssp SCEEEEECCTTCCGG--GGTTTHHHHHT-TSEEEECCCTTSTTSCGGGCC----TTGGGSHHHHHHHHHHHHHHT--TCC
T ss_pred CCeEEEECCCCCCcc--hHHHHHHHHhc-CceEEEEecCCCCCCCCCCCC----ccccccHHHHHHHHHHHHHHc--CCC
Confidence 389999999655433 45555666665 999999999999876543210 011125566666666665542 347
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcc--------------cc------cccCCCC
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTA--------------EW------EEWGDPW 545 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~--------------~~------~~~g~~~ 545 (648)
++.++|+|+||.+++.++.++|++++++|+.+|..............+... .+ ..++.+.
T Consensus 99 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T 3qvm_A 99 NVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGASH 178 (282)
T ss_dssp SEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCTTS
T ss_pred ceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcchhhHHHHHHhhccCCcc
Confidence 899999999999999999999999999999998764332110000000000 00 0011111
Q ss_pred CHHHH-------------------HHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEE
Q 006375 546 KEEFY-------------------FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 606 (648)
Q Consensus 546 ~~~~~-------------------~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 606 (648)
.+... ..+...+....+.++++| +|+++|++|..+|+..+.++.+.+.. .++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~ 253 (282)
T 3qvm_A 179 SSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTP-ALIFQSAKDSLASPEVGQYMAENIPN----SQLELIQ 253 (282)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGGCCSC-EEEEEEEECTTCCHHHHHHHHHHSSS----EEEEEEE
T ss_pred chhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhcCCCC-eEEEEeCCCCcCCHHHHHHHHHhCCC----CcEEEec
Confidence 11111 111122333556677888 99999999999999888888777643 3556666
Q ss_pred ecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 607 CELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 607 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
++||.......+.+. ..+.+||.++.
T Consensus 254 ---~~gH~~~~~~~~~~~--~~i~~fl~~~~ 279 (282)
T 3qvm_A 254 ---AEGHCLHMTDAGLIT--PLLIHFIQNNQ 279 (282)
T ss_dssp ---EESSCHHHHCHHHHH--HHHHHHHHHC-
T ss_pred ---CCCCcccccCHHHHH--HHHHHHHHhcC
Confidence 789975433333222 24678887754
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=151.14 Aligned_cols=211 Identities=14% Similarity=0.126 Sum_probs=133.7
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
..|+||++||..+.. ..|......|. ++|.|+++|+||.|..... .....+++++.+.+..+++.-. .
T Consensus 14 ~~~~vvllHG~~~~~--~~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l~--~ 81 (268)
T 3v48_A 14 DAPVVVLISGLGGSG--SYWLPQLAVLE-QEYQVVCYDQRGTGNNPDT-------LAEDYSIAQMAAELHQALVAAG--I 81 (268)
T ss_dssp TCCEEEEECCTTCCG--GGGHHHHHHHH-TTSEEEECCCTTBTTBCCC-------CCTTCCHHHHHHHHHHHHHHTT--C
T ss_pred CCCEEEEeCCCCccH--HHHHHHHHHHh-hcCeEEEECCCCCCCCCCC-------ccccCCHHHHHHHHHHHHHHcC--C
Confidence 468999999965543 34566555654 5799999999998865321 1123467787777777766532 3
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc----------cC--------CCCC--CCcccc-cc---
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM----------LD--------PTIP--LTTAEW-EE--- 540 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~----------~~--------~~~~--~~~~~~-~~--- 540 (648)
+++.++|+||||.+++.++.++|++++++|+..+........ .. ...+ .....| ..
T Consensus 82 ~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (268)
T 3v48_A 82 EHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAP 161 (268)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTTHH
T ss_pred CCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhhhcccc
Confidence 689999999999999999999999999999987753221000 00 0000 000000 00
Q ss_pred ---------c-CCCCCHH---HHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEe
Q 006375 541 ---------W-GDPWKEE---FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKC 607 (648)
Q Consensus 541 ---------~-g~~~~~~---~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (648)
. ..+.... ....+...+....+.++++| +||++|++|..+|+..++++.+.+.. .++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P-~Lii~G~~D~~~p~~~~~~l~~~~p~----~~~~~~~- 235 (268)
T 3v48_A 162 RLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCP-VQIICASDDLLVPTACSSELHAALPD----SQKMVMP- 235 (268)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSC-EEEEEETTCSSSCTHHHHHHHHHCSS----EEEEEES-
T ss_pred cchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCC-eEEEEeCCCcccCHHHHHHHHHhCCc----CeEEEeC-
Confidence 0 0000000 11122233334556778998 99999999999999988888777643 3445554
Q ss_pred cCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 608 ELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 608 ~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
++||+...++++.+.+ .+.+||...+
T Consensus 236 --~~GH~~~~e~p~~~~~--~i~~fl~~~~ 261 (268)
T 3v48_A 236 --YGGHACNVTDPETFNA--LLLNGLASLL 261 (268)
T ss_dssp --SCCTTHHHHCHHHHHH--HHHHHHHHHH
T ss_pred --CCCcchhhcCHHHHHH--HHHHHHHHhc
Confidence 8999876555555544 4578887654
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=148.93 Aligned_cols=122 Identities=21% Similarity=0.293 Sum_probs=91.3
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCC
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 463 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 463 (648)
.+|.++.....- +++.|+||++||..+... .|......|+++||.|+++|+||.|...... ....
T Consensus 11 ~~g~~l~~~~~g-------~~~~~~vv~~hG~~~~~~--~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~------~~~~ 75 (286)
T 3qit_A 11 FGGNQICLCSWG-------SPEHPVVLCIHGILEQGL--AWQEVALPLAAQGYRVVAPDLFGHGRSSHLE------MVTS 75 (286)
T ss_dssp ETTEEEEEEEES-------CTTSCEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTSTTSCCCS------SGGG
T ss_pred cCCceEEEeecC-------CCCCCEEEEECCCCcccc--hHHHHHHHhhhcCeEEEEECCCCCCCCCCCC------CCCC
Confidence 477777766331 134589999999765443 4667778899999999999999988654321 1122
Q ss_pred CcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccc
Q 006375 464 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDV 522 (648)
Q Consensus 464 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~ 522 (648)
..++++.+.+..+++.- +.+++.++|+|+||.+++.++.++|++++++|+.+|....
T Consensus 76 ~~~~~~~~~~~~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~ 132 (286)
T 3qit_A 76 YSSLTFLAQIDRVIQEL--PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPA 132 (286)
T ss_dssp CSHHHHHHHHHHHHHHS--CSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCC
T ss_pred cCHHHHHHHHHHHHHhc--CCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCC
Confidence 45667777777666542 3478999999999999999999999999999999987653
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-15 Score=148.38 Aligned_cols=213 Identities=10% Similarity=0.057 Sum_probs=132.2
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|+||++||..+... .|...+..|+.+||.|+++|+||.|..... .....++++.+.+..+++.- +.+
T Consensus 29 ~~~vv~~HG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~G~S~~~--------~~~~~~~~~~~~~~~~~~~~--~~~ 96 (309)
T 3u1t_A 29 GQPVLFLHGNPTSSY--LWRNIIPYVVAAGYRAVAPDLIGMGDSAKP--------DIEYRLQDHVAYMDGFIDAL--GLD 96 (309)
T ss_dssp SSEEEEECCTTCCGG--GGTTTHHHHHHTTCEEEEECCTTSTTSCCC--------SSCCCHHHHHHHHHHHHHHH--TCC
T ss_pred CCEEEEECCCcchhh--hHHHHHHHHHhCCCEEEEEccCCCCCCCCC--------CcccCHHHHHHHHHHHHHHc--CCC
Confidence 579999999765433 356667777889999999999998865431 11356677777766666542 337
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccc-----------------ccCCC--------CCCCcccc-c
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT-----------------MLDPT--------IPLTTAEW-E 539 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~-----------------~~~~~--------~~~~~~~~-~ 539 (648)
++.++|+|+||.+++.++.++|++++++|+..|....... +.... .......+ .
T Consensus 97 ~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (309)
T 3u1t_A 97 DMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFRDLRTADVGEKMVLDGNFFVETILP 176 (309)
T ss_dssp SEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGGGHHHHHHHHHHHTSTTHHHHHHTTTCHHHHTHHH
T ss_pred ceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccccchhhhHHHHHHhccchhhhhccccceehhhhcc
Confidence 8999999999999999999999999999998875442200 00000 00000000 0
Q ss_pred c--cCCCCCHHHHH-----------------HHHcCC--------------ccccCCCCCCCeEEEeecCCCCccCCchH
Q 006375 540 E--WGDPWKEEFYF-----------------YMKSYS--------------PVDNVKAQNYPHILVTAGLNDPRVMYSEP 586 (648)
Q Consensus 540 ~--~g~~~~~~~~~-----------------~~~~~s--------------p~~~~~~~~~P~~li~~g~~D~~v~~~~~ 586 (648)
. ......++... ++.... ....+.++++| +|+++|++|..+|+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~l~i~G~~D~~~~~~~~ 255 (309)
T 3u1t_A 177 EMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGEWLMASPIP-KLLFHAEPGALAPKPVV 255 (309)
T ss_dssp HTSCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCCSC-EEEEEEEECSSSCHHHH
T ss_pred cccccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhhhhhhhhhhhcccCCCC-EEEEecCCCCCCCHHHH
Confidence 0 00001111111 111110 01123456788 99999999999998888
Q ss_pred HHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCC
Q 006375 587 AKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 587 ~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
.++.+.+.. .+.++++ ++||+......+.+.+ .+.+||.++.+..
T Consensus 256 ~~~~~~~~~----~~~~~~~---~~gH~~~~~~p~~~~~--~i~~fl~~~~~~~ 300 (309)
T 3u1t_A 256 DYLSENVPN----LEVRFVG---AGTHFLQEDHPHLIGQ--GIADWLRRNKPHA 300 (309)
T ss_dssp HHHHHHSTT----EEEEEEE---EESSCHHHHCHHHHHH--HHHHHHHHHCCCC
T ss_pred HHHHhhCCC----CEEEEec---CCcccchhhCHHHHHH--HHHHHHHhcchhh
Confidence 788777643 2345554 7899754443333322 4678998887654
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=141.86 Aligned_cols=181 Identities=16% Similarity=0.174 Sum_probs=119.7
Q ss_pred CcEEEEecCCCCCCCCCCCchhHH-HHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRL-SLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~-~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
.|+||++||..+.... .|..... .|+++||.|+.+|+|.++. ..++++.+.+..+++.- .
T Consensus 4 ~p~vv~~HG~~~~~~~-~~~~~~~~~l~~~g~~v~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~---~ 64 (192)
T 1uxo_A 4 TKQVYIIHGYRASSTN-HWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQHTL---H 64 (192)
T ss_dssp CCEEEEECCTTCCTTS-TTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGGGC---C
T ss_pred CCEEEEEcCCCCCcch-hHHHHHHHHHHhCCcEEEEecCCCCCC---------------CCHHHHHHHHHHHHHhc---c
Confidence 5889999997654431 3555553 5778999999999993211 13566666666555442 5
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCC--ceeEEEecCCcccccccccCCCCCCCcccccccC-CCCCHHHHHHHHcCCcccc
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPD--LFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWG-DPWKEEFYFYMKSYSPVDN 561 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~--~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~sp~~~ 561 (648)
+++.++|+|+||.+++.++.++|+ .++++|+.+|+...... . .....|. .+.+. ..
T Consensus 65 ~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~-----~----~~~~~~~~~~~~~------------~~ 123 (192)
T 1uxo_A 65 ENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPT-----L----QMLDEFTQGSFDH------------QK 123 (192)
T ss_dssp TTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTT-----C----GGGGGGTCSCCCH------------HH
T ss_pred CCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCcccc-----c----hhhhhhhhcCCCH------------HH
Confidence 789999999999999999999999 99999999987653211 1 0111121 12121 12
Q ss_pred CCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 562 VKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 562 ~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
+.++++| +|+++|++|..||+.++.++.+.+ ..++++++ ++||+......+.+.+ .++||.+.|.
T Consensus 124 ~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~---~~gH~~~~~~~~~~~~---~~~~l~~~l~ 188 (192)
T 1uxo_A 124 IIESAKH-RAVIASKDDQIVPFSFSKDLAQQI-----DAALYEVQ---HGGHFLEDEGFTSLPI---VYDVLTSYFS 188 (192)
T ss_dssp HHHHEEE-EEEEEETTCSSSCHHHHHHHHHHT-----TCEEEEET---TCTTSCGGGTCSCCHH---HHHHHHHHHH
T ss_pred HHhhcCC-EEEEecCCCCcCCHHHHHHHHHhc-----CceEEEeC---CCcCcccccccccHHH---HHHHHHHHHH
Confidence 2334556 999999999999999888887776 23455564 8899775443322222 3456655553
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=156.86 Aligned_cols=224 Identities=14% Similarity=0.078 Sum_probs=142.4
Q ss_pred ceEEEEEeCC-CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCE----EEEEccCCCCCC
Q 006375 375 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFI----FAIAQIRGGGEL 449 (648)
Q Consensus 375 ~~~~~~~~s~-~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~----v~~~~~rG~g~~ 449 (648)
..+.+.+.|. .|..+.++++.|++. . ++++|+|+++||+...... .+......|+++|++ |+++|++|++..
T Consensus 167 ~v~~~~~~S~~~g~~~~~~vy~P~~~-~-~~~~PvlvllHG~~~~~~~-~~~~~~~~l~~~g~~~p~iVV~~d~~~~~~r 243 (403)
T 3c8d_A 167 PAKEIIWKSERLKNSRRVWIFTTGDV-T-AEERPLAVLLDGEFWAQSM-PVWPVLTSLTHRQQLPPAVYVLIDAIDTTHR 243 (403)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEC-------CCCCEEEESSHHHHHHTS-CCHHHHHHHHHTTSSCSCEEEEECCCSHHHH
T ss_pred ceEEEEEEccccCCcEEEEEEeCCCC-C-CCCCCEEEEeCCHHHhhcC-cHHHHHHHHHHcCCCCCeEEEEECCCCCccc
Confidence 4566666664 677899998888764 2 4679999999995432111 233445678888875 999998863211
Q ss_pred ChhhhhcccccCCCCcHhHHH--HHHHHHHHcC--CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccc
Q 006375 450 GRQWYENGKFLKKKNTFTDFI--ACAEYLIKNC--YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 525 (648)
Q Consensus 450 g~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~~--~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~ 525 (648)
..++ .....+.|++ +++.++.++. ..|+++++|+|+||||++++.++.++|++|+++++.+|.+++...
T Consensus 244 ~~~~-------~~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg~~~~~~~ 316 (403)
T 3c8d_A 244 AHEL-------PCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHR 316 (403)
T ss_dssp HHHS-------SSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCT
T ss_pred cccC-------CChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEeccccccCCC
Confidence 1111 0112344443 4667776653 358899999999999999999999999999999999998753211
Q ss_pred ccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEE
Q 006375 526 MLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 605 (648)
Q Consensus 526 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 605 (648)
+++.+....+.+.. .+ ...... +++|.||+.|+.+ +.++++++++|+++|.+.++.++
T Consensus 317 ----------------~~~~~~~~~~~~~~-~~---~~~~~~-~i~l~~G~~D~~~-~~~~~~l~~~L~~~G~~v~~~~~ 374 (403)
T 3c8d_A 317 ----------------GGQQEGVLLEKLKA-GE---VSAEGL-RIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQV 374 (403)
T ss_dssp ----------------TSSSCCHHHHHHHT-TS---SCCCSC-EEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEE
T ss_pred ----------------CCCcHHHHHHHHHh-cc---ccCCCc-eEEEEeeCCCchh-HHHHHHHHHHHHhCCCCEEEEEe
Confidence 01111111222222 11 122234 5999999998754 67899999999999988766655
Q ss_pred EecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 606 KCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 606 ~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
+ + +|.. ...-..+.+.+.||.+.+.
T Consensus 375 ~---G-gH~~----~~w~~~l~~~l~~l~~~~~ 399 (403)
T 3c8d_A 375 D---G-GHDA----LCWRGGLMQGLIDLWQPLF 399 (403)
T ss_dssp S---C-CSCH----HHHHHHHHHHHHHHHGGGT
T ss_pred C---C-CCCH----HHHHHHHHHHHHHHhcccc
Confidence 4 5 6852 1111234566788877654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-13 Score=141.60 Aligned_cols=245 Identities=12% Similarity=0.077 Sum_probs=161.7
Q ss_pred CCCCEEEEEEeCCCCe-EEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcE
Q 006375 90 PDNKLVAYAEDTKGDE-IYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDI 166 (648)
Q Consensus 90 PDG~~la~~~~~~G~e-~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~ 166 (648)
+.+++|||.....+.+ ..+|+++|++++...... -......++||||| .|+|...+. ....|+++++.++. ..
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~tg~--~~ 216 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGA--VR 216 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCC--EE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCc--EE
Confidence 4588999998764421 279999999876654332 22334569999999 899887643 24579999998873 33
Q ss_pred EEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEeccCCCCCc
Q 006375 167 CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNS 245 (648)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~ 245 (648)
.+.. . ......+.|||||++|++.....+...||++|+.+++ .+.+...... ....|+|||++|++.++.+ ...
T Consensus 217 ~l~~-~-~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~--g~~ 291 (415)
T 2hqs_A 217 QVAS-F-PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQA--GRP 291 (415)
T ss_dssp EEEC-C-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTT--SSC
T ss_pred Eeec-C-CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-EEeCcCCCCcccceEECCCCCEEEEEECCC--CCc
Confidence 3332 2 2345578999999999988776667899999999887 6666554332 3456999999999998753 345
Q ss_pred EEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCC
Q 006375 246 ELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPS 325 (648)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~ 325 (648)
+|+.+|+++. ..+.+..+.....-..++++++.+++....++...+++++++. +....++. .. .+..+
T Consensus 292 ~i~~~d~~~~-~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~--~~~~~l~~--------~~-~~~~~ 359 (415)
T 2hqs_A 292 QVYKVNINGG-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--GGVQVLSS--------TF-LDETP 359 (415)
T ss_dssp EEEEEETTSS-CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT--CCEEECCC--------SS-SCEEE
T ss_pred EEEEEECCCC-CEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC--CCEEEecC--------CC-CcCCe
Confidence 8999998763 3332333322221223444556777777776777899999873 33222221 11 23334
Q ss_pred CCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 326 ESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 326 ~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
.+++++..+++... ......+|.+|+.++.
T Consensus 360 ~~spdg~~l~~~s~-~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 360 SLAPNGTMVIYSSS-QGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EECTTSSEEEEEEE-ETTEEEEEEEETTSCC
T ss_pred EEcCCCCEEEEEEc-CCCccEEEEEECCCCc
Confidence 56678886665543 3334589999997665
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=150.28 Aligned_cols=217 Identities=19% Similarity=0.197 Sum_probs=125.7
Q ss_pred CcEEEEecCCC-CCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 406 DPLLLYGYGSY-EICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 406 ~P~vl~~hGg~-~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
.|.||++||.. +......|...+..|.+ +|.|+++|+||.|... . .....+++++.+.+..+++.-.+ .
T Consensus 36 g~~vvllHG~~~~~~~~~~~~~~~~~L~~-~~~vi~~Dl~G~G~S~-~-------~~~~~~~~~~~~dl~~~l~~l~~-~ 105 (296)
T 1j1i_A 36 GQPVILIHGGGAGAESEGNWRNVIPILAR-HYRVIAMDMLGFGKTA-K-------PDIEYTQDRRIRHLHDFIKAMNF-D 105 (296)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHTT-TSEEEEECCTTSTTSC-C-------CSSCCCHHHHHHHHHHHHHHSCC-S
T ss_pred CCeEEEECCCCCCcchHHHHHHHHHHHhh-cCEEEEECCCCCCCCC-C-------CCCCCCHHHHHHHHHHHHHhcCC-C
Confidence 46899999963 22222234555556654 5999999999988654 1 11123566666655555544222 2
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc--cCCC--CCCCcccc----cc-cCCCC--CHHH----
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM--LDPT--IPLTTAEW----EE-WGDPW--KEEF---- 549 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~--~~~~--~~~~~~~~----~~-~g~~~--~~~~---- 549 (648)
+++.++|+||||.+++.++.++|++++++|+..|........ .... .......+ .. ..++. .++.
T Consensus 106 ~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (296)
T 1j1i_A 106 GKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGMVHLVKALTNDGFKIDDAMINSR 185 (296)
T ss_dssp SCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHHHHHHHHHSCTTCCCCHHHHHHH
T ss_pred CCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcccCCchHHHHHHHHhccCcccccHHHHHHH
Confidence 689999999999999999999999999999988754211100 0000 00000000 00 11111 1110
Q ss_pred ------------HHH-HH-------cCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecC
Q 006375 550 ------------YFY-MK-------SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCEL 609 (648)
Q Consensus 550 ------------~~~-~~-------~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 609 (648)
+.. +. .+.....+.++++| +|+++|++|..+|+..+.++.+.+. ..++++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~Lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~--- 257 (296)
T 1j1i_A 186 YTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVP-TLVVQGKDDKVVPVETAYKFLDLID----DSWGYIIP--- 257 (296)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSC-EEEEEETTCSSSCHHHHHHHHHHCT----TEEEEEES---
T ss_pred HHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCC-EEEEEECCCcccCHHHHHHHHHHCC----CCEEEEEC---
Confidence 000 00 01122345677898 9999999999999988887776654 23445554
Q ss_pred CCCccCCCchHHHHHHHHHHHHHHHHhcCCCCC
Q 006375 610 GAGHFSKSGRFERLREAAFTYTFLMRALSMLPS 642 (648)
Q Consensus 610 ~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 642 (648)
++||+...+..+.+.+ .+.+||.++++.++.
T Consensus 258 ~~gH~~~~e~p~~~~~--~i~~fl~~~~~~~~~ 288 (296)
T 1j1i_A 258 HCGHWAMIEHPEDFAN--ATLSFLSLRVDITPA 288 (296)
T ss_dssp SCCSCHHHHSHHHHHH--HHHHHHHHC------
T ss_pred CCCCCchhcCHHHHHH--HHHHHHhccCCcCch
Confidence 8999765444443333 568999999987654
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.61 E-value=9.3e-16 Score=149.72 Aligned_cols=210 Identities=17% Similarity=0.184 Sum_probs=123.1
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||..+.. ..|......|.++||.|+++|+||+|........ ..-..-.+|+.+++++|.+.+. +
T Consensus 16 ~~~vvllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~GhG~s~~~~~~----~~~~~~~~d~~~~~~~l~~~~~---~ 86 (247)
T 1tqh_A 16 ERAVLLLHGFTGNS--ADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVH----TGPDDWWQDVMNGYEFLKNKGY---E 86 (247)
T ss_dssp SCEEEEECCTTCCT--HHHHHHHHHHHHTTCEEEECCCTTSSSCHHHHTT----CCHHHHHHHHHHHHHHHHHHTC---C
T ss_pred CcEEEEECCCCCCh--HHHHHHHHHHHHCCCEEEecccCCCCCCHHHhcC----CCHHHHHHHHHHHHHHHHHcCC---C
Confidence 46899999965543 2355566778888999999999999854221100 0000113466667777776553 6
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecC-Ccccccc-cc-------cC---CCCCCCccc----ccccC-CC-CCH
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV-PFVDVLT-TM-------LD---PTIPLTTAE----WEEWG-DP-WKE 547 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~-~~~d~~~-~~-------~~---~~~~~~~~~----~~~~g-~~-~~~ 547 (648)
++.++|+||||.+++.++.++| ++++|+.+ |...... .. .. ......... ...+. .+ ...
T Consensus 87 ~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (247)
T 1tqh_A 87 KIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTL 164 (247)
T ss_dssp CEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTH
T ss_pred eEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHHHhhcccccchHHHHhhhhcccCCCHHHH
Confidence 8999999999999999999998 77777543 3221000 00 00 000000000 00000 00 000
Q ss_pred HHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCch-HHHHHHH
Q 006375 548 EFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGR-FERLREA 626 (648)
Q Consensus 548 ~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~-~~~~~~~ 626 (648)
.....+. .+....+.++++| +|+++|++|..||+..++++++++... ..++++++ ++||....+. .+.+.+
T Consensus 165 ~~~~~~~-~~~~~~l~~i~~P-~Lii~G~~D~~~p~~~~~~~~~~~~~~--~~~~~~~~---~~gH~~~~e~~~~~~~~- 236 (247)
T 1tqh_A 165 KALQELI-ADVRDHLDLIYAP-TFVVQARHDEMINPDSANIIYNEIESP--VKQIKWYE---QSGHVITLDQEKDQLHE- 236 (247)
T ss_dssp HHHHHHH-HHHHHTGGGCCSC-EEEEEETTCSSSCTTHHHHHHHHCCCS--SEEEEEET---TCCSSGGGSTTHHHHHH-
T ss_pred HHHHHHH-HHHHhhcccCCCC-EEEEecCCCCCCCcchHHHHHHhcCCC--ceEEEEeC---CCceeeccCccHHHHHH-
Confidence 0110000 1223456677898 999999999999999998888776531 23455564 8999765432 333333
Q ss_pred HHHHHHHHH
Q 006375 627 AFTYTFLMR 635 (648)
Q Consensus 627 ~~~~~fl~~ 635 (648)
.+.+||.+
T Consensus 237 -~i~~Fl~~ 244 (247)
T 1tqh_A 237 -DIYAFLES 244 (247)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHh
Confidence 46788875
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-15 Score=161.08 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=90.0
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 455 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 455 (648)
.+..++++.||.++..... ++.|+||++||+.+.. ..|...+..|+++||.|+++|+||.|.....-
T Consensus 237 ~~~~~~~~~dg~~l~~~~~---------g~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~D~~G~G~S~~~~-- 303 (555)
T 3i28_A 237 MSHGYVTVKPRVRLHFVEL---------GSGPAVCLCHGFPESW--YSWRYQIPALAQAGYRVLAMDMKGYGESSAPP-- 303 (555)
T ss_dssp SEEEEEEEETTEEEEEEEE---------CSSSEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEEECCTTSTTSCCCS--
T ss_pred cceeEEEeCCCcEEEEEEc---------CCCCEEEEEeCCCCch--hHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC--
Confidence 3556667778987764411 2458999999976554 34666778899999999999999988653321
Q ss_pred cccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 456 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 456 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
......++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+.+|..
T Consensus 304 ----~~~~~~~~~~~~d~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 362 (555)
T 3i28_A 304 ----EIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPF 362 (555)
T ss_dssp ----CGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred ----CcccccHHHHHHHHHHHHHH--cCCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCC
Confidence 11122345555444444433 234689999999999999999999999999999887643
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=143.14 Aligned_cols=212 Identities=10% Similarity=0.047 Sum_probs=129.6
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
...|+||++||..+.. ..|...+..|.++||.|+++|+||.|....... ...+++++.+.+..+++.- .+
T Consensus 10 ~~~~~vvllHG~~~~~--~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~-------~~~~~~~~~~~~~~~l~~l-~~ 79 (267)
T 3sty_A 10 FVKKHFVLVHAAFHGA--WCWYKIVALMRSSGHNVTALDLGASGINPKQAL-------QIPNFSDYLSPLMEFMASL-PA 79 (267)
T ss_dssp CCCCEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTCSCCGG-------GCCSHHHHHHHHHHHHHTS-CT
T ss_pred CCCCeEEEECCCCCCc--chHHHHHHHHHhcCCeEEEeccccCCCCCCcCC-------ccCCHHHHHHHHHHHHHhc-CC
Confidence 3468999999976543 346677788888999999999999887644311 1245666666666665542 13
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccC--------CCCCCCcccc-----------------
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD--------PTIPLTTAEW----------------- 538 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~--------~~~~~~~~~~----------------- 538 (648)
.+++.++|+|+||.+++.++.++|++++++|+..|.......... ....+....+
T Consensus 80 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (267)
T 3sty_A 80 NEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAGP 159 (267)
T ss_dssp TSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCTTSCCCEEECCH
T ss_pred CCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhhhcccchhhhhH
Confidence 589999999999999999999999999999988875422110000 0000000000
Q ss_pred ----cccCCCCCHHHHHHHHc---------------CCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCC
Q 006375 539 ----EEWGDPWKEEFYFYMKS---------------YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599 (648)
Q Consensus 539 ----~~~g~~~~~~~~~~~~~---------------~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~ 599 (648)
..+.....++....+.. ...+......++| +|+++|++|..+|+....++.+.+. .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~----~ 234 (267)
T 3sty_A 160 KFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVK-RVFIVATENDALKKEFLKLMIEKNP----P 234 (267)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSC-EEEEECCCSCHHHHHHHHHHHHHSC----C
T ss_pred HHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCC-EEEEEeCCCCccCHHHHHHHHHhCC----C
Confidence 00111111111111111 1112222222577 9999999999999888877776653 2
Q ss_pred CCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 600 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 600 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
.++++++ ++||+....+.+.+.. .+.+|+.+
T Consensus 235 ~~~~~i~---~~gH~~~~e~p~~~~~--~i~~fl~~ 265 (267)
T 3sty_A 235 DEVKEIE---GSDHVTMMSKPQQLFT--TLLSIANK 265 (267)
T ss_dssp SEEEECT---TCCSCHHHHSHHHHHH--HHHHHHHH
T ss_pred ceEEEeC---CCCccccccChHHHHH--HHHHHHHh
Confidence 3455554 8999765444444333 34677765
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-14 Score=143.88 Aligned_cols=230 Identities=17% Similarity=0.107 Sum_probs=134.6
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYE 455 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~ 455 (648)
.+...++..+ .++..+. .+. ++.|+||++||+.+... .|...+..|++ ||.|+++|+||.|+....
T Consensus 45 ~~~~~v~~~~-~~~~~~~---~g~----~~~~~vv~lHG~~~~~~--~~~~~~~~L~~-g~~vi~~D~~G~gG~s~~--- 110 (306)
T 2r11_A 45 CKSFYISTRF-GQTHVIA---SGP----EDAPPLVLLHGALFSST--MWYPNIADWSS-KYRTYAVDIIGDKNKSIP--- 110 (306)
T ss_dssp CEEEEECCTT-EEEEEEE---ESC----TTSCEEEEECCTTTCGG--GGTTTHHHHHH-HSEEEEECCTTSSSSCEE---
T ss_pred cceEEEecCC-ceEEEEe---eCC----CCCCeEEEECCCCCCHH--HHHHHHHHHhc-CCEEEEecCCCCCCCCCC---
Confidence 3455555444 4565542 121 23589999999765543 35555667776 999999999998432211
Q ss_pred cccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc-------cC
Q 006375 456 NGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-------LD 528 (648)
Q Consensus 456 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~-------~~ 528 (648)
......++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+.+|..+..... ..
T Consensus 111 ----~~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 184 (306)
T 2r11_A 111 ----ENVSGTRTDYANWLLDVFDN--LGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYALG 184 (306)
T ss_dssp ----CSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBTSCCCHHHHHHHHT
T ss_pred ----CCCCCCHHHHHHHHHHHHHh--cCCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccccCcccHHHHHHHhH
Confidence 11234566777666666654 234789999999999999999999999999999999977642110 00
Q ss_pred CCCCCCccccccc--CCC-CC-HH---HHHHHH-------cC----------CccccCCCCCCCeEEEeecCCCCccCCc
Q 006375 529 PTIPLTTAEWEEW--GDP-WK-EE---FYFYMK-------SY----------SPVDNVKAQNYPHILVTAGLNDPRVMYS 584 (648)
Q Consensus 529 ~~~~~~~~~~~~~--g~~-~~-~~---~~~~~~-------~~----------sp~~~~~~~~~P~~li~~g~~D~~v~~~ 584 (648)
.........+..+ +.. .. +. ...... .+ .....+.++++| +|+++|++|..+|+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~ 263 (306)
T 2r11_A 185 LTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVP-ILLLLGEHEVIYDPH 263 (306)
T ss_dssp TTSTTHHHHHHHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSC-EEEEEETTCCSSCHH
T ss_pred HHHHHHHHHHHHHhhCCccccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCC-EEEEEeCCCcccCHH
Confidence 0000000000000 110 00 00 000000 00 112234456788 999999999999988
Q ss_pred hHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 585 EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 585 ~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
.+.++++++. ...++++++ ++||.......+.+.+ .+.+||.
T Consensus 264 ~~~~~~~~~~---~~~~~~~~~---~~gH~~~~e~p~~~~~--~i~~fl~ 305 (306)
T 2r11_A 264 SALHRASSFV---PDIEAEVIK---NAGHVLSMEQPTYVNE--RVMRFFN 305 (306)
T ss_dssp HHHHHHHHHS---TTCEEEEET---TCCTTHHHHSHHHHHH--HHHHHHC
T ss_pred HHHHHHHHHC---CCCEEEEeC---CCCCCCcccCHHHHHH--HHHHHHh
Confidence 7776665542 234556664 8899754433333322 3456663
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-15 Score=146.85 Aligned_cols=223 Identities=11% Similarity=0.052 Sum_probs=134.2
Q ss_pred ceEEEEEeCCC-CeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHH-CCCEEEEEccCCCCCC---
Q 006375 375 FTERKWASASD-GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGEL--- 449 (648)
Q Consensus 375 ~~~~~~~~s~~-g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~g~~--- 449 (648)
..+.+.+.|.. |.++.++++.|++. ..++++|+|++.||+...... .......+++ .+.+|+.++++++..+
T Consensus 12 ~~~~~~~~S~~~~~~~~~~vylP~~y-~~~~~yPvly~l~G~~~~~~~--~~~~~~~l~~~~~~ivV~v~~~~~~~~~~~ 88 (278)
T 2gzs_A 12 HFSATSFDSVDGTRHYRVWTAVPNTT-APASGYPILYMLDGNAVMDRL--DDELLKQLSEKTPPVIVAVGYQTNLPFDLN 88 (278)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEESSC-CCTTCEEEEEESSHHHHHHHC--CHHHHHHHTTSCCCEEEEEEESSSSSCCHH
T ss_pred ceEEEEEEcCCCCceEEEEEECCCCC-CCCCCCCEEEEeeChhHHHHH--HHHHHHHhccCCCeEEEEEcCCCCCcCccc
Confidence 45777888876 67899999999887 556779988777775321110 1122344554 5788888888764321
Q ss_pred --Chhhhhcc-c-----------ccC-CCCcHhHHH--HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeE
Q 006375 450 --GRQWYENG-K-----------FLK-KKNTFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKA 512 (648)
Q Consensus 450 --g~~~~~~~-~-----------~~~-~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a 512 (648)
+.++.... . ... ....+.+++ ..+.++.++..+|++|++|+|+||||++++.++.+ |++|++
T Consensus 89 ~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~~-p~~f~~ 167 (278)
T 2gzs_A 89 SRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRS 167 (278)
T ss_dssp HHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSE
T ss_pred ccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHhC-ccccCe
Confidence 11221110 0 000 001222222 12334444555888999999999999999999999 999999
Q ss_pred EEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCcc--------CCc
Q 006375 513 AVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRV--------MYS 584 (648)
Q Consensus 513 ~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v--------~~~ 584 (648)
+++.+|.+.+.. ......+..+.+. ....+++++.+|+.|..+ +..
T Consensus 168 ~~~~s~~~~~~~----------------------~~~~~~~~~~~~~----~~~~~~i~l~~G~~d~~~~~~~~~~~~~~ 221 (278)
T 2gzs_A 168 YYSASPSLGRGY----------------------DALLSRVTAVEPL----QFCTKHLAIMEGSATQGDNRETHAVGVLS 221 (278)
T ss_dssp EEEESGGGSTTH----------------------HHHHHHHHTSCTT----TTTTCEEEEEECCC-----------CHHH
T ss_pred EEEeCcchhcCc----------------------chHHHHHHHhhcc----CCCCCcEEEEecCccccccccchhhhhHH
Confidence 999998643210 0111122222211 112336999999999875 468
Q ss_pred hHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 585 EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 585 ~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
++++++++|+++|++.++.++ ++++|.. ..+..+.+.+.||.+
T Consensus 222 ~~~~~~~~L~~~g~~~~~~~~---~g~~H~~-----~~~~~~~~~l~fl~~ 264 (278)
T 2gzs_A 222 KIHTTLTILKDKGVNAVFWDF---PNLGHGP-----MFNASFRQALLDISG 264 (278)
T ss_dssp HHHHHHHHHHHTTCCEEEEEC---TTCCHHH-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCeeEEEEc---CCCCccc-----hhHHHHHHHHHHHhh
Confidence 999999999999887654444 4778842 222333455677764
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=153.16 Aligned_cols=205 Identities=18% Similarity=0.130 Sum_probs=127.5
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|+||++||..+.. ..|...+..|++ ||.|+++|+||.|.... ......++|+.+.+..+++.- +.+
T Consensus 68 ~p~vv~lhG~~~~~--~~~~~~~~~L~~-~~~v~~~D~~G~G~S~~--------~~~~~~~~~~~~dl~~~l~~l--~~~ 134 (314)
T 3kxp_A 68 GPLMLFFHGITSNS--AVFEPLMIRLSD-RFTTIAVDQRGHGLSDK--------PETGYEANDYADDIAGLIRTL--ARG 134 (314)
T ss_dssp SSEEEEECCTTCCG--GGGHHHHHTTTT-TSEEEEECCTTSTTSCC--------CSSCCSHHHHHHHHHHHHHHH--TSS
T ss_pred CCEEEEECCCCCCH--HHHHHHHHHHHc-CCeEEEEeCCCcCCCCC--------CCCCCCHHHHHHHHHHHHHHh--CCC
Confidence 68999999976543 235555555554 79999999999886541 222346677777777666542 337
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc-------cCCCCCCCccc---c----cccCCCCCHHHHH
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-------LDPTIPLTTAE---W----EEWGDPWKEEFYF 551 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~-------~~~~~~~~~~~---~----~~~g~~~~~~~~~ 551 (648)
++.++|+|+||.+++.++.++|++++++|+.+|........ .. ..+..... + .............
T Consensus 135 ~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (314)
T 3kxp_A 135 HAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEARVN-AGSQLFEDIKAVEAYLAGRYPNIPADAIR 213 (314)
T ss_dssp CEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHHHHHTT-TTCSCBSSHHHHHHHHHHHSTTSCHHHHH
T ss_pred CcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHHHHHhh-hchhhhcCHHHHHHHHHhhcccCchHHHH
Confidence 99999999999999999999999999999998765322110 00 00000000 0 0000000111110
Q ss_pred H-HH--------------------------cCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEE
Q 006375 552 Y-MK--------------------------SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILL 604 (648)
Q Consensus 552 ~-~~--------------------------~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 604 (648)
. .. ..+....+.++++| +|+++|++|..+|+..+.++.+.+. ..++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~Lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~ 288 (314)
T 3kxp_A 214 IRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKP-VLIVRGESSKLVSAAALAKTSRLRP----DLPVVV 288 (314)
T ss_dssp HHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSC-EEEEEETTCSSSCHHHHHHHHHHCT----TSCEEE
T ss_pred HHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCC-EEEEecCCCccCCHHHHHHHHHhCC----CceEEE
Confidence 0 00 01333445567888 9999999999999988888887764 245566
Q ss_pred EEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 605 FKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 605 ~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
++ ++||.......+.+. ..+.+||.
T Consensus 289 ~~---g~gH~~~~e~~~~~~--~~i~~fl~ 313 (314)
T 3kxp_A 289 VP---GADHYVNEVSPEITL--KAITNFID 313 (314)
T ss_dssp ET---TCCSCHHHHCHHHHH--HHHHHHHH
T ss_pred cC---CCCCcchhhCHHHHH--HHHHHHHh
Confidence 65 889976433333222 24567764
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-15 Score=145.72 Aligned_cols=211 Identities=14% Similarity=0.073 Sum_probs=124.6
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHH-CCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
+.|+||++||..+... .|......|++ +||.|+++|+||.|.....- . ..++++.+.+..+++.- .+
T Consensus 20 ~~~~vv~lhG~~~~~~--~~~~~~~~l~~~~g~~v~~~d~~G~G~s~~~~--------~-~~~~~~~~~~~~~l~~~-~~ 87 (272)
T 3fsg_A 20 SGTPIIFLHGLSLDKQ--STCLFFEPLSNVGQYQRIYLDLPGMGNSDPIS--------P-STSDNVLETLIEAIEEI-IG 87 (272)
T ss_dssp CSSEEEEECCTTCCHH--HHHHHHTTSTTSTTSEEEEECCTTSTTCCCCS--------S-CSHHHHHHHHHHHHHHH-HT
T ss_pred CCCeEEEEeCCCCcHH--HHHHHHHHHhccCceEEEEecCCCCCCCCCCC--------C-CCHHHHHHHHHHHHHHH-hC
Confidence 4578999999654332 24444445665 69999999999988653221 0 34455554444444331 13
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCC-CCC----------CCcc---cccccCCCCCHHH
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP-TIP----------LTTA---EWEEWGDPWKEEF 549 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~-~~~----------~~~~---~~~~~g~~~~~~~ 549 (648)
.+++.++|+|+||.+++.++.++|++++++|+.+|........... ... +... .+........+..
T Consensus 88 ~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (272)
T 3fsg_A 88 ARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYFADFLSMNVIINNQA 167 (272)
T ss_dssp TCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECSCCCCCTTGGGHHHHHHHCSEESHHH
T ss_pred CCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhhhhhcccCHHHHHHHHHHhccCCCch
Confidence 4789999999999999999999999999999998875332211000 000 0000 0000000001111
Q ss_pred -------------------HHHHHcC-----CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEE
Q 006375 550 -------------------YFYMKSY-----SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLF 605 (648)
Q Consensus 550 -------------------~~~~~~~-----sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 605 (648)
...+... .+...+.++++| +|+++|++|..||+..+.++.+.+. ..+++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~ 242 (272)
T 3fsg_A 168 WHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFP-FKIMVGRNDQVVGYQEQLKLINHNE----NGEIVLL 242 (272)
T ss_dssp HHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSC-EEEEEETTCTTTCSHHHHHHHTTCT----TEEEEEE
T ss_pred hHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCC-EEEEEeCCCCcCCHHHHHHHHHhcC----CCeEEEe
Confidence 1111111 111134667888 9999999999999988887776553 2344555
Q ss_pred EecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 606 KCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 606 ~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
+ ++||+......+.+.+ .+.+||.+..
T Consensus 243 ~---~~gH~~~~~~~~~~~~--~i~~fl~~~~ 269 (272)
T 3fsg_A 243 N---RTGHNLMIDQREAVGF--HFDLFLDELN 269 (272)
T ss_dssp S---SCCSSHHHHTHHHHHH--HHHHHHHHHH
T ss_pred c---CCCCCchhcCHHHHHH--HHHHHHHHhh
Confidence 4 8899764443333332 4678887654
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-14 Score=143.39 Aligned_cols=226 Identities=14% Similarity=0.096 Sum_probs=134.4
Q ss_pred EeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCCh-hhhhcccc
Q 006375 381 ASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR-QWYENGKF 459 (648)
Q Consensus 381 ~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~-~~~~~~~~ 459 (648)
+...+|.++..... +. ...|.||++||..+.... .|...+..| .+||.|+++|.||.|.... .-
T Consensus 7 ~~~~~g~~l~~~~~---G~----~~~~~vvllHG~~~~~~~-~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~~~------ 71 (286)
T 2yys_A 7 YVPVGEAELYVEDV---GP----VEGPALFVLHGGPGGNAY-VLREGLQDY-LEGFRVVYFDQRGSGRSLELPQ------ 71 (286)
T ss_dssp EEECSSCEEEEEEE---SC----TTSCEEEEECCTTTCCSH-HHHHHHGGG-CTTSEEEEECCTTSTTSCCCCS------
T ss_pred EEeECCEEEEEEee---cC----CCCCEEEEECCCCCcchh-HHHHHHHHh-cCCCEEEEECCCCCCCCCCCcc------
Confidence 34457777765422 11 134789999997654430 245545555 4699999999999986542 10
Q ss_pred cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccc---cccCCC--CCC-
Q 006375 460 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT---TMLDPT--IPL- 533 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~---~~~~~~--~~~- 533 (648)
.....+++++.+.+..+++.- ..+++.++|+||||.+++.++.++|+ ++++|+..|..+... ...... .+.
T Consensus 72 ~~~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (286)
T 2yys_A 72 DPRLFTVDALVEDTLLLAEAL--GVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNFPWLAARLAEAAGLAPLP 148 (286)
T ss_dssp CGGGCCHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBHHHHHHHHHHHTTCCCCS
T ss_pred CcccCcHHHHHHHHHHHHHHh--CCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCcHHHHHHHHHHhccccch
Confidence 000245666666666655542 33689999999999999999999999 999999988643211 000000 000
Q ss_pred -------------Ccccc-cc--cC-------------------CCCCHHHH--HHHHcCCccccCCCCCCCeEEEeecC
Q 006375 534 -------------TTAEW-EE--WG-------------------DPWKEEFY--FYMKSYSPVDNVKAQNYPHILVTAGL 576 (648)
Q Consensus 534 -------------~~~~~-~~--~g-------------------~~~~~~~~--~~~~~~sp~~~~~~~~~P~~li~~g~ 576 (648)
....+ .. +. .+.....+ ..+..++....+.++++| +|+++|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lvi~G~ 227 (286)
T 2yys_A 149 DPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYTPYLTPERRP-LYVLVGE 227 (286)
T ss_dssp CHHHHHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCGGGCCCCSSC-EEEEEET
T ss_pred hHHHHHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChhhhhhhcCCC-EEEEEeC
Confidence 00000 00 00 00000000 001112233446677898 9999999
Q ss_pred CCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHh
Q 006375 577 NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 577 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 636 (648)
+|..+|+. +.++.+ +.. .++++++ ++||....+..+.+.+ .+.+||.+.
T Consensus 228 ~D~~~~~~-~~~~~~-~~~----~~~~~i~---~~gH~~~~e~p~~~~~--~i~~fl~~~ 276 (286)
T 2yys_A 228 RDGTSYPY-AEEVAS-RLR----APIRVLP---EAGHYLWIDAPEAFEE--AFKEALAAL 276 (286)
T ss_dssp TCTTTTTT-HHHHHH-HHT----CCEEEET---TCCSSHHHHCHHHHHH--HHHHHHHTT
T ss_pred CCCcCCHh-HHHHHh-CCC----CCEEEeC---CCCCCcChhhHHHHHH--HHHHHHHhh
Confidence 99999998 888877 653 3456665 8999765444443333 457888653
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-15 Score=146.98 Aligned_cols=210 Identities=11% Similarity=0.083 Sum_probs=126.9
Q ss_pred CcEEEEecCC-CCCCCCCCCchhH-HHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 406 DPLLLYGYGS-YEICNDPAFNSSR-LSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 406 ~P~vl~~hGg-~~~~~~~~~~~~~-~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
.|.||++||. ++......|...+ ..|.+ +|.|+++|.||.|..... .....+++++.+.+..+++.- +
T Consensus 33 g~~vvllHG~~~~~~~~~~w~~~~~~~L~~-~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l--~ 102 (286)
T 2puj_A 33 GETVIMLHGGGPGAGGWSNYYRNVGPFVDA-GYRVILKDSPGFNKSDAV-------VMDEQRGLVNARAVKGLMDAL--D 102 (286)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHHHT-TCEEEEECCTTSTTSCCC-------CCSSCHHHHHHHHHHHHHHHT--T
T ss_pred CCcEEEECCCCCCCCcHHHHHHHHHHHHhc-cCEEEEECCCCCCCCCCC-------CCcCcCHHHHHHHHHHHHHHh--C
Confidence 4789999996 3323223355556 66665 599999999998865421 111245677776666665542 3
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccC-CC-----------CCCCc--ccc-cc-cCCC--C
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD-PT-----------IPLTT--AEW-EE-WGDP--W 545 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~-~~-----------~~~~~--~~~-~~-~g~~--~ 545 (648)
.+++.++|+||||.+++.++.++|++++++|+..|.......... .. .+... ..+ .. ..++ .
T Consensus 103 ~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (286)
T 2puj_A 103 IDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLI 182 (286)
T ss_dssp CCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGC
T ss_pred CCceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcCCccC
Confidence 478999999999999999999999999999998875421100000 00 00000 000 00 0011 0
Q ss_pred CHH--------------HHHH----HH-----cCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCe
Q 006375 546 KEE--------------FYFY----MK-----SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 602 (648)
Q Consensus 546 ~~~--------------~~~~----~~-----~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~ 602 (648)
.++ .... +. .+.....++++++| +|+++|++|..+|+..+.++.+.+.. .++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~Lii~G~~D~~~p~~~~~~~~~~~~~----~~~ 257 (286)
T 2puj_A 183 TEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAK-TFITWGRDDRFVPLDHGLKLLWNIDD----ARL 257 (286)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSC-EEEEEETTCSSSCTHHHHHHHHHSSS----EEE
T ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhhcCCC-EEEEEECCCCccCHHHHHHHHHHCCC----CeE
Confidence 111 1110 10 11223456677898 99999999999999888888776642 345
Q ss_pred EEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 603 LLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 603 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
++++ ++||.......+.+.. .+.+||.+
T Consensus 258 ~~i~---~~gH~~~~e~p~~~~~--~i~~fl~~ 285 (286)
T 2puj_A 258 HVFS---KCGAWAQWEHADEFNR--LVIDFLRH 285 (286)
T ss_dssp EEES---SCCSCHHHHTHHHHHH--HHHHHHHH
T ss_pred EEeC---CCCCCccccCHHHHHH--HHHHHHhc
Confidence 5564 8999765444443333 45678764
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=145.53 Aligned_cols=210 Identities=20% Similarity=0.243 Sum_probs=121.9
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCe
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 486 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 486 (648)
|.||++||+++.... |......++++||.|+++|.||.|.....- ....+++++.+.+..+++.- .+.++
T Consensus 29 ~~vvllHG~~~~~~~--~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~dl~~~~~~l-~~~~~ 98 (293)
T 1mtz_A 29 AKLMTMHGGPGMSHD--YLLSLRDMTKEGITVLFYDQFGCGRSEEPD-------QSKFTIDYGVEEAEALRSKL-FGNEK 98 (293)
T ss_dssp EEEEEECCTTTCCSG--GGGGGGGGGGGTEEEEEECCTTSTTSCCCC-------GGGCSHHHHHHHHHHHHHHH-HTTCC
T ss_pred CeEEEEeCCCCcchh--HHHHHHHHHhcCcEEEEecCCCCccCCCCC-------CCcccHHHHHHHHHHHHHHh-cCCCc
Confidence 789999997665432 222234556789999999999988653211 01133455554444444331 02258
Q ss_pred EEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc-----cCCCCCC---------------Cccc-------c-
Q 006375 487 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-----LDPTIPL---------------TTAE-------W- 538 (648)
Q Consensus 487 i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~-----~~~~~~~---------------~~~~-------~- 538 (648)
+.++|+||||.+++.++.++|++++++|+.+|........ +....+. .... +
T Consensus 99 ~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (293)
T 1mtz_A 99 VFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFY 178 (293)
T ss_dssp EEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred EEEEEecHHHHHHHHHHHhCchhhheEEecCCccChHHHHHHHHHHHHhcCHHHHHHHHHhhccCCcChHHHHHHHHHHH
Confidence 9999999999999999999999999999998875521100 0000000 0000 0
Q ss_pred cccC---CCCCHHHHHHHH------------------------cCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHH
Q 006375 539 EEWG---DPWKEEFYFYMK------------------------SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVA 591 (648)
Q Consensus 539 ~~~g---~~~~~~~~~~~~------------------------~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~ 591 (648)
..+. .+..+.....+. .++....+.++++| +|+++|++| .+++..+.++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D-~~~~~~~~~~~~ 256 (293)
T 1mtz_A 179 HQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIP-TLITVGEYD-EVTPNVARVIHE 256 (293)
T ss_dssp HHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGGGCCSC-EEEEEETTC-SSCHHHHHHHHH
T ss_pred HhhcccccCchHHHHHhHhhhccchhhhhccCcceecccccccCCChhhhhccCCCC-EEEEeeCCC-CCCHHHHHHHHH
Confidence 0000 111111111100 11122345567898 999999999 677777766666
Q ss_pred HHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 592 KLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 592 ~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
.+. ..++++++ ++||.......+.+.. .+.+||.++|
T Consensus 257 ~~~----~~~~~~~~---~~gH~~~~e~p~~~~~--~i~~fl~~~l 293 (293)
T 1mtz_A 257 KIA----GSELHVFR---DCSHLTMWEDREGYNK--LLSDFILKHL 293 (293)
T ss_dssp HST----TCEEEEET---TCCSCHHHHSHHHHHH--HHHHHHHTCC
T ss_pred hCC----CceEEEeC---CCCCCccccCHHHHHH--HHHHHHHhcC
Confidence 543 34556664 8999764444443333 4678887653
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-15 Score=148.63 Aligned_cols=235 Identities=14% Similarity=0.197 Sum_probs=134.6
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
+...+++.+| ++... .. .++.|+||++||..+... .|......|+.+||.|+++|+||.|.......
T Consensus 4 ~~~~~~~~~~-~~~~~----~~----~~~~~~vv~lHG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~-- 70 (279)
T 4g9e_A 4 NYHELETSHG-RIAVR----ES----EGEGAPLLMIHGNSSSGA--IFAPQLEGEIGKKWRVIAPDLPGHGKSTDAID-- 70 (279)
T ss_dssp EEEEEEETTE-EEEEE----EC----CCCEEEEEEECCTTCCGG--GGHHHHHSHHHHHEEEEEECCTTSTTSCCCSC--
T ss_pred EEEEEEcCCc-eEEEE----ec----CCCCCeEEEECCCCCchh--HHHHHHhHHHhcCCeEEeecCCCCCCCCCCCC--
Confidence 4555666665 34322 22 134689999999765432 35666666677899999999999987643110
Q ss_pred ccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc--cCCCC---
Q 006375 457 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM--LDPTI--- 531 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~--~~~~~--- 531 (648)
......++|+.+.+..+++. .+.+++.++|+|+||.+++.++.++|+..+.+++..|........ .....
T Consensus 71 ---~~~~~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ 145 (279)
T 4g9e_A 71 ---PDRSYSMEGYADAMTEVMQQ--LGIADAVVFGWSLGGHIGIEMIARYPEMRGLMITGTPPVAREEVGQGFKSGPDMA 145 (279)
T ss_dssp ---HHHHSSHHHHHHHHHHHHHH--HTCCCCEEEEETHHHHHHHHHTTTCTTCCEEEEESCCCCCGGGHHHHBCCSTTGG
T ss_pred ---cccCCCHHHHHHHHHHHHHH--hCCCceEEEEECchHHHHHHHHhhCCcceeEEEecCCCCCCCccchhhccchhhh
Confidence 00113456666666665554 234689999999999999999999999444444444433221100 00000
Q ss_pred -----CCCccc---c--cccCCCCCHHHHHHHHc------------------CCccccCCCCCCCeEEEeecCCCCccCC
Q 006375 532 -----PLTTAE---W--EEWGDPWKEEFYFYMKS------------------YSPVDNVKAQNYPHILVTAGLNDPRVMY 583 (648)
Q Consensus 532 -----~~~~~~---~--~~~g~~~~~~~~~~~~~------------------~sp~~~~~~~~~P~~li~~g~~D~~v~~ 583 (648)
.+.... + ..+..+..+.....+.. .+....+.++++| +|+++|++|..||+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~l~i~g~~D~~~~~ 224 (279)
T 4g9e_A 146 LAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEAQLP-IAVVNGRDEPFVEL 224 (279)
T ss_dssp GGGCSCCCHHHHHHHHHHHHCSSCCHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHCCSC-EEEEEETTCSSBCH
T ss_pred hcCcccccHHHHHHHHHhhccCcccHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHhcCCC-EEEEEcCCCcccch
Confidence 000000 0 01122222222222211 1122234556888 99999999999998
Q ss_pred chHHHHH-HHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 584 SEPAKFV-AKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 584 ~~~~~~~-~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
..+.++. +.+. ..++++++ ++||.......+.+.+ .+.+||.++-..
T Consensus 225 ~~~~~~~~~~~~----~~~~~~~~---~~gH~~~~~~p~~~~~--~i~~fl~~~~~~ 272 (279)
T 4g9e_A 225 DFVSKVKFGNLW----EGKTHVID---NAGHAPFREAPAEFDA--YLARFIRDCTQL 272 (279)
T ss_dssp HHHTTCCCSSBG----GGSCEEET---TCCSCHHHHSHHHHHH--HHHHHHHHHHSS
T ss_pred HHHHHHhhccCC----CCeEEEEC---CCCcchHHhCHHHHHH--HHHHHHHHhhhh
Confidence 7766655 3322 23556665 8899754444433332 567899887654
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=142.60 Aligned_cols=223 Identities=17% Similarity=0.153 Sum_probs=134.7
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 459 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 459 (648)
++.+.||.+|..... + .+..|+||++||..... ..|......|+ ++|.|+++|.||.|.....
T Consensus 8 ~~~~~~g~~l~y~~~---G----~~~~p~lvl~hG~~~~~--~~w~~~~~~L~-~~~~vi~~D~rG~G~S~~~------- 70 (266)
T 3om8_A 8 FLATSDGASLAYRLD---G----AAEKPLLALSNSIGTTL--HMWDAQLPALT-RHFRVLRYDARGHGASSVP------- 70 (266)
T ss_dssp EEECTTSCEEEEEEE---S----CTTSCEEEEECCTTCCG--GGGGGGHHHHH-TTCEEEEECCTTSTTSCCC-------
T ss_pred EEeccCCcEEEEEec---C----CCCCCEEEEeCCCccCH--HHHHHHHHHhh-cCcEEEEEcCCCCCCCCCC-------
Confidence 356678888765421 1 12358899999955433 33666666666 4899999999999876421
Q ss_pred cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccc---------cccC-C
Q 006375 460 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT---------TMLD-P 529 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~---------~~~~-~ 529 (648)
....+++++.+.+..+++.- ..+++.++|+||||.+++.++.++|++++++|+..+..-+.. .... .
T Consensus 71 -~~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 147 (266)
T 3om8_A 71 -PGPYTLARLGEDVLELLDAL--EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAE 147 (266)
T ss_dssp -CSCCCHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHHHHHCS
T ss_pred -CCCCCHHHHHHHHHHHHHHh--CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHHHHccc
Confidence 11245666666666555542 236899999999999999999999999999998765321100 0000 0
Q ss_pred CCCCCccc-cccc-------CCCC------------CHHH----HHHHHcCCccccCCCCCCCeEEEeecCCCCccCCch
Q 006375 530 TIPLTTAE-WEEW-------GDPW------------KEEF----YFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSE 585 (648)
Q Consensus 530 ~~~~~~~~-~~~~-------g~~~------------~~~~----~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~ 585 (648)
........ ...| ..+. .+.. +..+...+....+.++++| +||++|++|..+|+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P-~Lvi~G~~D~~~~~~~ 226 (266)
T 3om8_A 148 DMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERP-TLVIAGAYDTVTAASH 226 (266)
T ss_dssp SSHHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSC-EEEEEETTCSSSCHHH
T ss_pred cHHHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCC-EEEEEeCCCCCCCHHH
Confidence 00000000 0000 0110 0000 1111222223456677898 9999999999999988
Q ss_pred HHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHH
Q 006375 586 PAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 633 (648)
Q Consensus 586 ~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl 633 (648)
++++.+.+.. .+++++ .+||+...++++.+.. .+.+||
T Consensus 227 ~~~l~~~ip~----a~~~~i----~~gH~~~~e~p~~~~~--~i~~Fl 264 (266)
T 3om8_A 227 GELIAASIAG----ARLVTL----PAVHLSNVEFPQAFEG--AVLSFL 264 (266)
T ss_dssp HHHHHHHSTT----CEEEEE----SCCSCHHHHCHHHHHH--HHHHHH
T ss_pred HHHHHHhCCC----CEEEEe----CCCCCccccCHHHHHH--HHHHHh
Confidence 8888776653 345555 2589765555554443 345676
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-15 Score=144.01 Aligned_cols=186 Identities=17% Similarity=0.178 Sum_probs=120.5
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHH------H
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLI------K 478 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~------~ 478 (648)
+.|+||++||..+.... |. ....|+ +||.|+++|+||.|.... ....+++++.+.+..++ +
T Consensus 15 ~~~~vv~~hG~~~~~~~--~~-~~~~l~-~g~~v~~~d~~g~g~s~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 81 (245)
T 3e0x_A 15 SPNTLLFVHGSGCNLKI--FG-ELEKYL-EDYNCILLDLKGHGESKG---------QCPSTVYGYIDNVANFITNSEVTK 81 (245)
T ss_dssp CSCEEEEECCTTCCGGG--GT-TGGGGC-TTSEEEEECCTTSTTCCS---------CCCSSHHHHHHHHHHHHHHCTTTT
T ss_pred CCCEEEEEeCCcccHHH--HH-HHHHHH-hCCEEEEecCCCCCCCCC---------CCCcCHHHHHHHHHHHHHhhhhHh
Confidence 46899999997665443 34 344444 899999999999886531 12245666666666665 3
Q ss_pred cCCCCCCeEEEEeeChhHHHHHHHHhh-CCCceeEEEecCCcccccccc-------cCCCCCC---------Ccccc-cc
Q 006375 479 NCYCTKEKLCIEGRSAGGLLIGAVLNM-RPDLFKAAVAAVPFVDVLTTM-------LDPTIPL---------TTAEW-EE 540 (648)
Q Consensus 479 ~~~~d~~~i~i~G~S~GG~l~~~~~~~-~p~~~~a~v~~~~~~d~~~~~-------~~~~~~~---------~~~~~-~~ 540 (648)
. .+ ++.++|+|+||.+++.++.+ +|+ ++++|+.+|..+..... ....... ....+ ..
T Consensus 82 ~--~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (245)
T 3e0x_A 82 H--QK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSEK 156 (245)
T ss_dssp T--CS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSHHHHH
T ss_pred h--cC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchHHHHH
Confidence 3 33 99999999999999999999 999 99999999977651110 0000000 00000 00
Q ss_pred c-CCC-CCHH----HHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCcc
Q 006375 541 W-GDP-WKEE----FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHF 614 (648)
Q Consensus 541 ~-g~~-~~~~----~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~ 614 (648)
+ ... ..+. .+..+..++....+.++++| +|+++|++|..||+..+.++.+.+.. .++++++ ++||.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~---~~gH~ 228 (245)
T 3e0x_A 157 YFETLEKDPDIMINDLIACKLIDLVDNLKNIDIP-VKAIVAKDELLTLVEYSEIIKKEVEN----SELKIFE---TGKHF 228 (245)
T ss_dssp HHTTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSC-EEEEEETTCSSSCHHHHHHHHHHSSS----EEEEEES---SCGGG
T ss_pred HHHHHhcCcHHHHHHHHHhccccHHHHHHhCCCC-EEEEEeCCCCCCCHHHHHHHHHHcCC----ceEEEeC---CCCcc
Confidence 0 000 0111 12223345566667778888 99999999999999888888777642 3455554 88996
Q ss_pred CC
Q 006375 615 SK 616 (648)
Q Consensus 615 ~~ 616 (648)
..
T Consensus 229 ~~ 230 (245)
T 3e0x_A 229 LL 230 (245)
T ss_dssp HH
T ss_pred eE
Confidence 53
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.9e-15 Score=145.90 Aligned_cols=209 Identities=16% Similarity=0.176 Sum_probs=122.1
Q ss_pred CcEEEEecCCC-CCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHH----HHHHHHHHHcC
Q 006375 406 DPLLLYGYGSY-EICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF----IACAEYLIKNC 480 (648)
Q Consensus 406 ~P~vl~~hGg~-~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~----~~~~~~l~~~~ 480 (648)
.|+||++||.. +......|...+..|++ +|.|+++|+||.|..... .....+++++ .+.+..+++.
T Consensus 29 ~p~vvllHG~~~~~~~~~~~~~~~~~L~~-~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~~~~dl~~~l~~- 99 (285)
T 1c4x_A 29 SPAVVLLHGAGPGAHAASNWRPIIPDLAE-NFFVVAPDLIGFGQSEYP-------ETYPGHIMSWVGMRVEQILGLMNH- 99 (285)
T ss_dssp SCEEEEECCCSTTCCHHHHHGGGHHHHHT-TSEEEEECCTTSTTSCCC-------SSCCSSHHHHHHHHHHHHHHHHHH-
T ss_pred CCEEEEEeCCCCCCcchhhHHHHHHHHhh-CcEEEEecCCCCCCCCCC-------CCcccchhhhhhhHHHHHHHHHHH-
Confidence 47799999953 22222335555566665 599999999998865321 1112345565 5544444433
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccc-------ccCC-CCCCCc--ccc-cc-cCCCC-C-
Q 006375 481 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT-------MLDP-TIPLTT--AEW-EE-WGDPW-K- 546 (648)
Q Consensus 481 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~-------~~~~-~~~~~~--~~~-~~-~g~~~-~- 546 (648)
.+.+++.++|+||||.+++.++.++|++++++|+.+|....... .... ..+... ..+ .. ..++. .
T Consensus 100 -l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (285)
T 1c4x_A 100 -FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYADPRLTPYRELIHSFVYDPENFP 178 (285)
T ss_dssp -HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGSCCHHHHHHHHHTTSSCSTTCT
T ss_pred -hCCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHHHHHHHhccccHHHHHHHHHHhhcCccccc
Confidence 12368999999999999999999999999999998875421100 0000 000000 000 00 01111 0
Q ss_pred ---------------HHHHHHHH-------cC-----CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCC
Q 006375 547 ---------------EEFYFYMK-------SY-----SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599 (648)
Q Consensus 547 ---------------~~~~~~~~-------~~-----sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~ 599 (648)
++....+. .+ .+...+.++++| +|+++|++|..||+..+.++.+.+. .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~p~~~~~~~~~~~~----~ 253 (285)
T 1c4x_A 179 GMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHD-VLVFHGRQDRIVPLDTSLYLTKHLK----H 253 (285)
T ss_dssp THHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSC-EEEEEETTCSSSCTHHHHHHHHHCS----S
T ss_pred CcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhccCCCC-EEEEEeCCCeeeCHHHHHHHHHhCC----C
Confidence 11111000 00 122345667888 9999999999999998888776654 2
Q ss_pred CCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 600 DNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 600 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
.++++++ ++||+......+.+.+ .+.+||.
T Consensus 254 ~~~~~i~---~~gH~~~~e~p~~~~~--~i~~fl~ 283 (285)
T 1c4x_A 254 AELVVLD---RCGHWAQLERWDAMGP--MLMEHFR 283 (285)
T ss_dssp EEEEEES---SCCSCHHHHSHHHHHH--HHHHHHH
T ss_pred ceEEEeC---CCCcchhhcCHHHHHH--HHHHHHh
Confidence 3455564 8899764444443333 4567775
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-14 Score=146.84 Aligned_cols=249 Identities=14% Similarity=0.060 Sum_probs=153.4
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC-c-cceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-V-TASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-~-~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
+..++|||||++|||..+..| ..+||++|+++++....+... . ...+.||||| .|+|...+. +||++++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g--~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~-----~l~~~d~~ 110 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDG--NRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNEL-----NLMKVDLE 110 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTS--SCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTT-----EEEEEETT
T ss_pred eecCcCCCCCCEEEEEEecCC--CceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCC-----cEEEEECC
Confidence 356899999999999998766 357899999999876543222 2 2338899999 898887532 69999998
Q ss_pred CCCCCcEEEEeecCCCeEEE-------------------EEeCCCCcEEEEEE--ccccccEEEEEECCCCCceeEeeec
Q 006375 160 ADQSNDICLYHEKDDIYSLG-------------------LQASESKKFLFIAS--ESKITRFVFYLDVSKPEELRVLTPR 218 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~-------------------~~~s~Dg~~l~~~~--~~~~~~~l~~~dl~~~~~~~~l~~~ 218 (648)
++ +...++.... .+... ..|+|||+++++.. .......||++|+++++ .+.+...
T Consensus 111 ~~--~~~~~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~~~~~ 186 (396)
T 3c5m_A 111 TL--EEQVIYTVDE-EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE-LEVIHQD 186 (396)
T ss_dssp TC--CEEEEEECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC-EEEEEEE
T ss_pred CC--CcEEEEeccc-ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc-EEeeccC
Confidence 86 3444554332 22211 35677777665432 12345789999999987 6666543
Q ss_pred ccc-eeeeEee-cCCEEEEEeccCC-CCCcEEEEEeCCCCCcceeEecCCCCcccceEEE--eCCEEEEEEecCCeeE--
Q 006375 219 VVG-VDTAASH-RGNHFFITRRSDE-LFNSELLACPVDNTSETTVLIPHRESVKLQDIQL--FIDHLAVYEREGGLQK-- 291 (648)
Q Consensus 219 ~~~-~~~~~s~-dg~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~-- 291 (648)
... ....|+| ||+.|+|.++... ..+.+|+.+++++ +..+.+........+..+.+ +++.+++....++...
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV 265 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-CCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-CceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce
Confidence 332 2356999 8988999876311 1126899999875 33332433222223444444 4556777766655544
Q ss_pred EEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcc-cccEEEEEEeeCCCC--------------CEEEEEECCCCc
Q 006375 292 ITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVF-SSRILRFHYSSLRTP--------------PSVYDYDMDMGI 356 (648)
Q Consensus 292 l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~-~~~~l~~~~ss~~~P--------------~~~~~~d~~~~~ 356 (648)
|+++++.. +....+ ..++. .. ..+++ ++..+++. ++. .| ..+|.+|+.+++
T Consensus 266 l~~~d~~~--g~~~~l-----~~~~~--~~---~~~s~~dg~~l~~~-~~~-~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 266 IYKANPET--LENEEV-----MVMPP--CS---HLMSNFDGSLMVGD-GCD-APVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EEEECTTT--CCEEEE-----EECCS--EE---EEEECSSSSEEEEE-ECC-C----------CCCCCCEEEEEETTTTB
T ss_pred EEEEECCC--CCeEEe-----eeCCC--CC---CCccCCCCceEEEe-cCC-cceeeccccccccCCCCcEEEEecccCc
Confidence 88888763 322211 11221 11 23445 77744443 322 43 789999999887
Q ss_pred E
Q 006375 357 S 357 (648)
Q Consensus 357 ~ 357 (648)
.
T Consensus 332 ~ 332 (396)
T 3c5m_A 332 A 332 (396)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.1e-15 Score=144.00 Aligned_cols=204 Identities=13% Similarity=0.103 Sum_probs=123.5
Q ss_pred CCcEEEEecCCCCCCCCCCCc----hhHHHHHHCCCEEEEEccCCCC--------------------CCChhhhhccccc
Q 006375 405 SDPLLLYGYGSYEICNDPAFN----SSRLSLLDRGFIFAIAQIRGGG--------------------ELGRQWYENGKFL 460 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~----~~~~~l~~~G~~v~~~~~rG~g--------------------~~g~~~~~~~~~~ 460 (648)
+.|+||++||..++.. .|. .....|.++||.|+.+|.++.. +....|...
T Consensus 4 ~~~~vl~lHG~g~~~~--~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~w~~~---- 77 (243)
T 1ycd_A 4 QIPKLLFLHGFLQNGK--VFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFYH---- 77 (243)
T ss_dssp CCCEEEEECCTTCCHH--HHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEESSCC----
T ss_pred cCceEEEeCCCCccHH--HHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCcccccC----
Confidence 4689999999654332 222 2334556669999999999321 111233311
Q ss_pred CCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCC------CceeEEEecCCcccccccccCCCCCCC
Q 006375 461 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP------DLFKAAVAAVPFVDVLTTMLDPTIPLT 534 (648)
Q Consensus 461 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p------~~~~a~v~~~~~~d~~~~~~~~~~~~~ 534 (648)
.......|+.+++++|.+....+..+++|+|+||||.+++.++.+.+ ..++++++.+++....... ..+
T Consensus 78 ~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~---~~~-- 152 (243)
T 1ycd_A 78 SEISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDP---EHP-- 152 (243)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECT---TST--
T ss_pred CCCcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCccc---ccc--
Confidence 01123467777777776543234468999999999999999887642 1467777777765321110 000
Q ss_pred cccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcC---CCCCeEEEEecCCC
Q 006375 535 TAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMK---TDDNILLFKCELGA 611 (648)
Q Consensus 535 ~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~ 611 (648)
.. ..+.. + + ...+..+.++++| +|++||++|+.||+.++.++++.+...+ .....+++. ++
T Consensus 153 -~~-~~~~~----~-~-----~~~~~~~~~~~~P-~l~i~G~~D~~vp~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~ 216 (243)
T 1ycd_A 153 -GE-LRITE----K-F-----RDSFAVKPDMKTK-MIFIYGASDQAVPSVRSKYLYDIYLKAQNGNKEKVLAYEH---PG 216 (243)
T ss_dssp -TC-EEECG----G-G-----TTTTCCCTTCCCE-EEEEEETTCSSSCHHHHHHHHHHHHHHTTTCTTTEEEEEE---SS
T ss_pred -cc-cccch----h-H-----HHhccCcccCCCC-EEEEEeCCCCccCHHHHHHHHHHhhhhccccccccEEEec---CC
Confidence 00 00000 0 0 0122234556777 9999999999999999999999998651 112234444 67
Q ss_pred CccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 612 GHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 612 gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
||...... . ....+.+||.+++..
T Consensus 217 gH~~~~~~-~---~~~~i~~fl~~~~~~ 240 (243)
T 1ycd_A 217 GHMVPNKK-D---IIRPIVEQITSSLQE 240 (243)
T ss_dssp SSSCCCCH-H---HHHHHHHHHHHHHC-
T ss_pred CCcCCchH-H---HHHHHHHHHHHhhhh
Confidence 99765432 2 333568999998864
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=144.24 Aligned_cols=206 Identities=15% Similarity=0.124 Sum_probs=122.2
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCe
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 486 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 486 (648)
|.||++||..+.. ..|...+..|+++||.|+++|+||.|..... ....+++++.+.+..+++. .+.++
T Consensus 24 ~pvvllHG~~~~~--~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~--------~~~~~~~~~~~dl~~~l~~--l~~~~ 91 (279)
T 1hkh_A 24 QPVVLIHGYPLDG--HSWERQTRELLAQGYRVITYDRRGFGGSSKV--------NTGYDYDTFAADLHTVLET--LDLRD 91 (279)
T ss_dssp EEEEEECCTTCCG--GGGHHHHHHHHHTTEEEEEECCTTSTTSCCC--------SSCCSHHHHHHHHHHHHHH--HTCCS
T ss_pred CcEEEEcCCCchh--hHHhhhHHHHHhCCcEEEEeCCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cCCCc
Confidence 4599999965543 3466677788889999999999999876432 1123455555544444443 23368
Q ss_pred EEEEeeChhHHHHHHHHhhCCC-ceeEEEecCCccccccccc-CC-CCCCCc------------cc-c-----ccc----
Q 006375 487 LCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAVPFVDVLTTML-DP-TIPLTT------------AE-W-----EEW---- 541 (648)
Q Consensus 487 i~i~G~S~GG~l~~~~~~~~p~-~~~a~v~~~~~~d~~~~~~-~~-~~~~~~------------~~-~-----~~~---- 541 (648)
+.++|+||||.+++.++.++|+ +++++|+..+......... .. ..+... .. + ..+
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (279)
T 1hkh_A 92 VVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDE 171 (279)
T ss_dssp EEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHH
T ss_pred eEEEEeChhHHHHHHHHHHcCccceeeEEEEccCCcccccCcCCcCCCcHHHHHHHHHHhhhhhhhhHHHHHhhhhhccc
Confidence 9999999999999999999998 9999999887432111000 00 000000 00 0 000
Q ss_pred --CCCCCHHHHHHH----------------H--cCCccccCCCC---CCCeEEEeecCCCCccCCchH-HHHHHHHHhcC
Q 006375 542 --GDPWKEEFYFYM----------------K--SYSPVDNVKAQ---NYPHILVTAGLNDPRVMYSEP-AKFVAKLREMK 597 (648)
Q Consensus 542 --g~~~~~~~~~~~----------------~--~~sp~~~~~~~---~~P~~li~~g~~D~~v~~~~~-~~~~~~l~~~~ 597 (648)
+....++....+ . ..+....+.++ ++| +|+++|++|..+|+..+ .++.+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~P-~lii~G~~D~~~~~~~~~~~~~~~~~--- 247 (279)
T 1hkh_A 172 NLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKP-TLILHGTKDNILPIDATARRFHQAVP--- 247 (279)
T ss_dssp HBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCC-EEEEEETTCSSSCTTTTHHHHHHHCT---
T ss_pred CCcccccHHHHHhhhhhhccCcHHHHHHHHHHHhhchhhhHHHhccCCCC-EEEEEcCCCccCChHHHHHHHHHhCC---
Confidence 111111111100 0 11111234455 788 99999999999999887 66665543
Q ss_pred CCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 598 TDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 598 ~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
..++++++ ++||.......+.+.+ .+.+||.
T Consensus 248 -~~~~~~i~---~~gH~~~~e~p~~~~~--~i~~fl~ 278 (279)
T 1hkh_A 248 -EADYVEVE---GAPHGLLWTHADEVNA--ALKTFLA 278 (279)
T ss_dssp -TSEEEEET---TCCTTHHHHTHHHHHH--HHHHHHH
T ss_pred -CeeEEEeC---CCCccchhcCHHHHHH--HHHHHhh
Confidence 34555564 8899764444433332 4567764
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-15 Score=150.59 Aligned_cols=208 Identities=16% Similarity=0.149 Sum_probs=126.7
Q ss_pred CCcEEEEecCCCCCCCCCCCc-hhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFN-SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
+.|+||++||..+.... |. .....|+++||.|+++|+||.|.... .....++++.+.+..+++.- +
T Consensus 42 ~~~~vv~lHG~~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G~G~s~~---------~~~~~~~~~~~~~~~~l~~l--~ 108 (293)
T 3hss_A 42 TGDPVVFIAGRGGAGRT--WHPHQVPAFLAAGYRCITFDNRGIGATEN---------AEGFTTQTMVADTAALIETL--D 108 (293)
T ss_dssp SSEEEEEECCTTCCGGG--GTTTTHHHHHHTTEEEEEECCTTSGGGTT---------CCSCCHHHHHHHHHHHHHHH--T
T ss_pred CCCEEEEECCCCCchhh--cchhhhhhHhhcCCeEEEEccCCCCCCCC---------cccCCHHHHHHHHHHHHHhc--C
Confidence 46889999997655433 44 34677888999999999999864321 11235566666555555432 3
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc----------c--CCCCCCCccc----cccc-----C
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM----------L--DPTIPLTTAE----WEEW-----G 542 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~----------~--~~~~~~~~~~----~~~~-----g 542 (648)
.+++.++|+|+||.+++.++.++|++++++|+.+|........ . ....+..... ...+ .
T Consensus 109 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (293)
T 3hss_A 109 IAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTLN 188 (293)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHSCHHHHT
T ss_pred CCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHhhhccccccc
Confidence 4689999999999999999999999999999999865432100 0 0000000000 0000 0
Q ss_pred C---------------C-CCHHHHHHH---HcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeE
Q 006375 543 D---------------P-WKEEFYFYM---KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 603 (648)
Q Consensus 543 ~---------------~-~~~~~~~~~---~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 603 (648)
. . ..+.....+ ...+....+.++++| +|+++|++|..+|+..+.++.+.+.. .+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~g~~D~~~~~~~~~~~~~~~~~----~~~~ 263 (293)
T 3hss_A 189 DDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAP-VLVIGFADDVVTPPYLGREVADALPN----GRYL 263 (293)
T ss_dssp CHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSC-EEEEEETTCSSSCHHHHHHHHHHSTT----EEEE
T ss_pred ccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCC-EEEEEeCCCCCCCHHHHHHHHHHCCC----ceEE
Confidence 0 0 001111011 011223445677888 99999999999999888888777643 3445
Q ss_pred EEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 604 LFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 604 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
+++ ++||.......+.+.+ .+.+||.+
T Consensus 264 ~~~---~~gH~~~~~~p~~~~~--~i~~fl~~ 290 (293)
T 3hss_A 264 QIP---DAGHLGFFERPEAVNT--AMLKFFAS 290 (293)
T ss_dssp EET---TCCTTHHHHSHHHHHH--HHHHHHHT
T ss_pred EeC---CCcchHhhhCHHHHHH--HHHHHHHh
Confidence 554 8899754433333322 45667654
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-15 Score=147.77 Aligned_cols=209 Identities=16% Similarity=0.138 Sum_probs=124.8
Q ss_pred CcEEEEecCCCCCCCC-CCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 406 DPLLLYGYGSYEICND-PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
.|.||++||....... ..|...+..| .+||.|+++|.||.|..... .....+++++.+.+..+++.- ..
T Consensus 25 g~~vvllHG~~~~~~~~~~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l--~~ 94 (282)
T 1iup_A 25 GQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGFGFTDRP-------ENYNYSKDSWVDHIIGIMDAL--EI 94 (282)
T ss_dssp SSEEEEECCCCTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCCC-------TTCCCCHHHHHHHHHHHHHHT--TC
T ss_pred CCeEEEECCCCCCccHHHHHHHHHHhh-ccCCEEEEECCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHh--CC
Confidence 4679999994322221 1344444455 67999999999998865321 011245677766666655542 33
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccc------cccCCCCCCC-----------------cccc---
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT------TMLDPTIPLT-----------------TAEW--- 538 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~------~~~~~~~~~~-----------------~~~~--- 538 (648)
+++.++|+||||.+++.+|.++|++++++|+..|...... ..... .+.. ..++
T Consensus 95 ~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (282)
T 1iup_A 95 EKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGY-TPSIENMRNLLDIFAYDRSLVTDELARL 173 (282)
T ss_dssp CSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTC-CSCHHHHHHHHHHHCSSGGGCCHHHHHH
T ss_pred CceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcC-CCcHHHHHHHHHHhhcCcccCCHHHHHH
Confidence 6899999999999999999999999999999887542110 00000 0000 0000
Q ss_pred --cccCCCCCHHHHHHHHc---------C-CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEE
Q 006375 539 --EEWGDPWKEEFYFYMKS---------Y-SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 606 (648)
Q Consensus 539 --~~~g~~~~~~~~~~~~~---------~-sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 606 (648)
.....+.....+..+.. . .+...+.++++| +|+++|++|..+|+..+.++.+.+.. .++++++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~p~~~~~~~~~~~~~----~~~~~i~ 248 (282)
T 1iup_A 174 RYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNE-TLIIHGREDQVVPLSSSLRLGELIDR----AQLHVFG 248 (282)
T ss_dssp HHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHTTCCSC-EEEEEETTCSSSCHHHHHHHHHHCTT----EEEEEES
T ss_pred HHhhccChHHHHHHHHHHhccccccccccccchhhhhhcCCC-EEEEecCCCCCCCHHHHHHHHHhCCC----CeEEEEC
Confidence 00011110011111100 0 011345677898 99999999999998888877766542 3455665
Q ss_pred ecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 607 CELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 607 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
++||+...+..+.+.+ .+.+||.+
T Consensus 249 ---~~gH~~~~e~p~~~~~--~i~~fl~~ 272 (282)
T 1iup_A 249 ---RCGHWTQIEQTDRFNR--LVVEFFNE 272 (282)
T ss_dssp ---SCCSCHHHHSHHHHHH--HHHHHHHT
T ss_pred ---CCCCCccccCHHHHHH--HHHHHHhc
Confidence 8999765444443333 45688875
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.2e-13 Score=151.30 Aligned_cols=246 Identities=12% Similarity=0.176 Sum_probs=152.0
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCC---Ceeeccc-cCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG---TPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g---~~~~~~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
.+..+.|||||++|+|... .+|+++|++++ +...... ......++||||| .|+|.+. .+|+.+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~------~~i~~~ 177 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG------RNLWVI 177 (741)
T ss_dssp ESCCCEECTTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET------TEEEEE
T ss_pred CcceeEECCCCCEEEEEeC------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC------CcEEEE
Confidence 4678999999999999985 38999999998 5544322 2334569999999 8988763 269999
Q ss_pred ECCCCCCCcEEEEeecCCCe---------------EEEEEeCCCCcEEEEEEccc-------------------------
Q 006375 157 KLEADQSNDICLYHEKDDIY---------------SLGLQASESKKFLFIASESK------------------------- 196 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~---------------~~~~~~s~Dg~~l~~~~~~~------------------------- 196 (648)
++.++ +...+........ ...+.|||||++|++.+...
T Consensus 178 d~~~g--~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 178 DLASG--RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp ETTTT--EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred ecCCC--CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 99876 2222222211111 13578999999999876432
Q ss_pred -----cccEEEEEECCC-CCceeEeeec---ccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCC
Q 006375 197 -----ITRFVFYLDVSK-PEELRVLTPR---VVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE 266 (648)
Q Consensus 197 -----~~~~l~~~dl~~-~~~~~~l~~~---~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (648)
....||++|+++ ++ .+.+... ... ....| |||++|++...........|+++|+++.. ...++....
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~ 332 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-QRVLAHETS 332 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-EEEEEEEEC
T ss_pred CCCCCCeeEEEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-eEEEEEcCC
Confidence 123899999998 87 5554422 111 23469 99999998876434456799999998743 333433222
Q ss_pred Cc---ccceEEEeCC-EEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCC-CCcccccEEEEEEeeC
Q 006375 267 SV---KLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPS-ESVFSSRILRFHYSSL 341 (648)
Q Consensus 267 ~~---~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~-~~~~~~~~l~~~~ss~ 341 (648)
.. .+..+.+.+| .+++....++..+|+.++++ ++ ...++.. .+.+... .++++++.+++..+ .
T Consensus 333 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~--~~-~~~l~~~--------~~~v~~~~~~s~dg~~l~~~~~-~ 400 (741)
T 2ecf_A 333 PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK--GK-AAALTHG--------NWSVDELLAVDEKAGLAYFRAG-I 400 (741)
T ss_dssp SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS--SC-EEESCCS--------SSCEEEEEEEETTTTEEEEEEC-S
T ss_pred CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC--CC-eeeeeec--------ceEEEeEeEEeCCCCEEEEEEe-C
Confidence 11 1234445443 25566666776778877665 43 3333221 1122222 35678887665554 3
Q ss_pred CCC--CEEEEEECCCCc
Q 006375 342 RTP--PSVYDYDMDMGI 356 (648)
Q Consensus 342 ~~P--~~~~~~d~~~~~ 356 (648)
..+ ..+|.++..++.
T Consensus 401 ~~~~~~~l~~~~~~g~~ 417 (741)
T 2ecf_A 401 ESARESQIYAVPLQGGQ 417 (741)
T ss_dssp SCTTCBEEEEEETTCCC
T ss_pred CCCceEEEEEEEcCCCC
Confidence 333 357777765543
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-14 Score=142.36 Aligned_cols=208 Identities=13% Similarity=0.102 Sum_probs=124.0
Q ss_pred cEEEEecCCC-CCCCCCCCchhH-HHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 407 PLLLYGYGSY-EICNDPAFNSSR-LSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 407 P~vl~~hGg~-~~~~~~~~~~~~-~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
|.||++||.. +......|...+ ..|. ++|.|+++|+||.|...... .....++++.+.+..+++.- +.
T Consensus 37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~l~~~l~~l--~~ 106 (289)
T 1u2e_A 37 ETVVLLHGSGPGATGWANFSRNIDPLVE-AGYRVILLDCPGWGKSDSVV-------NSGSRSDLNARILKSVVDQL--DI 106 (289)
T ss_dssp SEEEEECCCSTTCCHHHHTTTTHHHHHH-TTCEEEEECCTTSTTSCCCC-------CSSCHHHHHHHHHHHHHHHT--TC
T ss_pred ceEEEECCCCcccchhHHHHHhhhHHHh-cCCeEEEEcCCCCCCCCCCC-------ccccCHHHHHHHHHHHHHHh--CC
Confidence 3899999953 222222355555 4555 56999999999988654321 11345677777776666542 34
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccC-CC-----------CCCCc--ccc-cc-cCCC--CC
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD-PT-----------IPLTT--AEW-EE-WGDP--WK 546 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~-~~-----------~~~~~--~~~-~~-~g~~--~~ 546 (648)
+++.++|+||||.+++.++.++|++++++|+..|.......... +. .+... ..+ .. ..++ ..
T Consensus 107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
T 1u2e_A 107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLT 186 (289)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSCTTSCC
T ss_pred CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHhhcCcccCC
Confidence 78999999999999999999999999999988775421100000 00 00000 000 00 0011 01
Q ss_pred HH--------------HHHH----HH-----cCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeE
Q 006375 547 EE--------------FYFY----MK-----SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 603 (648)
Q Consensus 547 ~~--------------~~~~----~~-----~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 603 (648)
++ .... +. .+.....+.++++| +|+++|++|..+|+..+.++.+.+. ..+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~~~~~----~~~~~ 261 (289)
T 1u2e_A 187 DALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQ-TLIVWGRNDRFVPMDAGLRLLSGIA----GSELH 261 (289)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGGCCSC-EEEEEETTCSSSCTHHHHHHHHHST----TCEEE
T ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhhcCCC-eEEEeeCCCCccCHHHHHHHHhhCC----CcEEE
Confidence 11 1110 00 01122456677898 9999999999999998888877664 23455
Q ss_pred EEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 604 LFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 604 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
+++ ++||+......+.+.+ .+.+||.
T Consensus 262 ~i~---~~gH~~~~e~p~~~~~--~i~~fl~ 287 (289)
T 1u2e_A 262 IFR---DCGHWAQWEHADAFNQ--LVLNFLA 287 (289)
T ss_dssp EES---SCCSCHHHHTHHHHHH--HHHHHHT
T ss_pred EeC---CCCCchhhcCHHHHHH--HHHHHhc
Confidence 664 8999764444443332 3456663
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-14 Score=142.45 Aligned_cols=121 Identities=16% Similarity=0.085 Sum_probs=84.4
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhH-HHHHHCCCEEEEEccCCCCCCChhhhhcccccCC
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSR-LSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 462 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~-~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 462 (648)
.+|.++..... +. ...|.||++||..+... .|.... ..|+++||.|+++|.||.|.....- ....
T Consensus 8 ~~g~~l~y~~~---G~----~~~~~vvllHG~~~~~~--~w~~~~~~~L~~~G~~vi~~D~rG~G~S~~~~-----~~~~ 73 (298)
T 1q0r_A 8 SGDVELWSDDF---GD----PADPALLLVMGGNLSAL--GWPDEFARRLADGGLHVIRYDHRDTGRSTTRD-----FAAH 73 (298)
T ss_dssp ETTEEEEEEEE---SC----TTSCEEEEECCTTCCGG--GSCHHHHHHHHTTTCEEEEECCTTSTTSCCCC-----TTTS
T ss_pred cCCeEEEEEec---cC----CCCCeEEEEcCCCCCcc--chHHHHHHHHHhCCCEEEeeCCCCCCCCCCCC-----CCcC
Confidence 46776654321 11 13478999999655433 455534 7788889999999999998764300 0111
Q ss_pred CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 463 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 463 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
..+++++.+.+..+++. .+.+++.++|+||||.+++.++.++|++++++|+..+..
T Consensus 74 ~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 129 (298)
T 1q0r_A 74 PYGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGG 129 (298)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred CcCHHHHHHHHHHHHHH--hCCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccC
Confidence 24566766666665554 234689999999999999999999999999999877644
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-14 Score=147.50 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=78.6
Q ss_pred CcEEEEecCCCCCCCCC-------CCchhHH---HHHHCCCEEEEEccCC-CCCCChhhh-hc--cc---ccCCCCcHhH
Q 006375 406 DPLLLYGYGSYEICNDP-------AFNSSRL---SLLDRGFIFAIAQIRG-GGELGRQWY-EN--GK---FLKKKNTFTD 468 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~-------~~~~~~~---~l~~~G~~v~~~~~rG-~g~~g~~~~-~~--~~---~~~~~~~~~D 468 (648)
.|+||++||..+..... .|...+. .|+.+||.|+++|+|| .|+....-. .. +. ......+++|
T Consensus 59 ~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~~~~~~~~~~g~~~~~~~~~~~~~~ 138 (377)
T 2b61_A 59 NNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQD 138 (377)
T ss_dssp CCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCHHH
T ss_pred CCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCCCCcccCccccccccccCCcccHHH
Confidence 58999999976655430 1443332 3557899999999999 354321100 00 00 0011356788
Q ss_pred HHHHHHHHHHcCCCCCCeEE-EEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 469 FIACAEYLIKNCYCTKEKLC-IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 469 ~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
+.+.+..+++. .+.+++. ++|+||||.+++.++.++|++++++|+.+|..
T Consensus 139 ~~~~l~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 189 (377)
T 2b61_A 139 IVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSI 189 (377)
T ss_dssp HHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCS
T ss_pred HHHHHHHHHHH--cCCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCc
Confidence 88888887765 3346887 99999999999999999999999999998854
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-14 Score=140.99 Aligned_cols=224 Identities=15% Similarity=0.136 Sum_probs=130.9
Q ss_pred CCC-eEEeEEEEEeeCccccCCCCcEEEEecCC-CCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccC
Q 006375 384 SDG-TQIPICIVYRKNLVKLDGSDPLLLYGYGS-YEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK 461 (648)
Q Consensus 384 ~~g-~~i~~~l~~~~~~~~~~~~~P~vl~~hGg-~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 461 (648)
.+| .++.... .+ +++.|.||++||. ++......|...+..|++ .|.|+++|.||.|..... ..
T Consensus 20 ~~g~~~l~y~~---~G----~g~~~~vvllHG~~pg~~~~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~-------~~ 84 (291)
T 2wue_A 20 VDGPLKLHYHE---AG----VGNDQTVVLLHGGGPGAASWTNFSRNIAVLAR-HFHVLAVDQPGYGHSDKR-------AE 84 (291)
T ss_dssp SSSEEEEEEEE---EC----TTCSSEEEEECCCCTTCCHHHHTTTTHHHHTT-TSEEEEECCTTSTTSCCC-------SC
T ss_pred eCCcEEEEEEe---cC----CCCCCcEEEECCCCCccchHHHHHHHHHHHHh-cCEEEEECCCCCCCCCCC-------CC
Confidence 477 7665441 12 1334689999996 333222345555666665 499999999998865431 11
Q ss_pred CCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccC-CC----------
Q 006375 462 KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD-PT---------- 530 (648)
Q Consensus 462 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~-~~---------- 530 (648)
...+++++.+.+..+++.- +.+++.++|+||||.+++.+|.++|++++++|+..|.......... ..
T Consensus 85 ~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (291)
T 2wue_A 85 HGQFNRYAAMALKGLFDQL--GLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLSKFS 162 (291)
T ss_dssp CSSHHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSSCSSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHh--CCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccccccchhhHHHHHHh
Confidence 1245666666665555442 2368999999999999999999999999999998875421100000 00
Q ss_pred -CCCCc--ccc-cc-cCCC---------------CCHHHHHHHHc----C-C-----cc--ccCCCCCCCeEEEeecCCC
Q 006375 531 -IPLTT--AEW-EE-WGDP---------------WKEEFYFYMKS----Y-S-----PV--DNVKAQNYPHILVTAGLND 578 (648)
Q Consensus 531 -~~~~~--~~~-~~-~g~~---------------~~~~~~~~~~~----~-s-----p~--~~~~~~~~P~~li~~g~~D 578 (648)
.+... ..+ .. +.++ .++.....+.. + . +. ..+.++++| +|+++|++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lvi~G~~D 241 (291)
T 2wue_A 163 VAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQP-VLLIWGRED 241 (291)
T ss_dssp HSCCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGGCCSC-EEEEEETTC
T ss_pred ccCCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhhCCCC-eEEEecCCC
Confidence 00000 000 00 0111 01111111110 0 0 11 456677898 999999999
Q ss_pred CccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 579 PRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
..+|+..+.++.+.+.. .++++++ ++||.....+.+.+.+ .+.+||.
T Consensus 242 ~~~~~~~~~~~~~~~p~----~~~~~i~---~~gH~~~~e~p~~~~~--~i~~fl~ 288 (291)
T 2wue_A 242 RVNPLDGALVALKTIPR----AQLHVFG---QCGHWVQVEKFDEFNK--LTIEFLG 288 (291)
T ss_dssp SSSCGGGGHHHHHHSTT----EEEEEES---SCCSCHHHHTHHHHHH--HHHHHTT
T ss_pred CCCCHHHHHHHHHHCCC----CeEEEeC---CCCCChhhhCHHHHHH--HHHHHHh
Confidence 99999888887766542 3455554 8899764444443333 3456663
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=147.78 Aligned_cols=126 Identities=13% Similarity=0.042 Sum_probs=79.9
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHH-CCCEEEEEccCCCCCCChhhhhcccccCC
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKK 462 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 462 (648)
.+|.++.....-+++. +.+.+.||++||+++.... |......|++ .||.|+++|.||.|.....-. . ...
T Consensus 35 ~~g~~l~y~~~G~~~~---~~~g~plvllHG~~~~~~~--w~~~~~~l~~~~~~~Via~D~rG~G~S~~~~~-~---~~~ 105 (330)
T 3nwo_A 35 FGDHETWVQVTTPENA---QPHALPLIVLHGGPGMAHN--YVANIAALADETGRTVIHYDQVGCGNSTHLPD-A---PAD 105 (330)
T ss_dssp ETTEEEEEEEECCSSC---CTTCCCEEEECCTTTCCSG--GGGGGGGHHHHHTCCEEEECCTTSTTSCCCTT-S---CGG
T ss_pred ecCcEEEEEEecCccC---CCCCCcEEEECCCCCCchh--HHHHHHHhccccCcEEEEECCCCCCCCCCCCC-C---ccc
Confidence 3677776653332211 1112258888997766543 4444556665 699999999999986643100 0 001
Q ss_pred CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 463 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 463 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
..+++++.+.+..+++.- ..+++.++|+||||.+++.++.++|++++++|+..+..
T Consensus 106 ~~~~~~~a~dl~~ll~~l--g~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~ 161 (330)
T 3nwo_A 106 FWTPQLFVDEFHAVCTAL--GIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPA 161 (330)
T ss_dssp GCCHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCS
T ss_pred cccHHHHHHHHHHHHHHc--CCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCc
Confidence 123444444444443331 23689999999999999999999999999998876643
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=149.53 Aligned_cols=114 Identities=15% Similarity=0.097 Sum_probs=80.1
Q ss_pred CCCcEEEEecCCCCCCCC---CCCc-----------hhHHHHHHCCCEEEEEccCCCCCCChhhhh-ccc--ccCCCCcH
Q 006375 404 GSDPLLLYGYGSYEICND---PAFN-----------SSRLSLLDRGFIFAIAQIRGGGELGRQWYE-NGK--FLKKKNTF 466 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~---~~~~-----------~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~-~~~--~~~~~~~~ 466 (648)
++.|+||++||+.+.... ..|. .....|+++||.|+++|+||.|.....-.. .+. ...-....
T Consensus 48 ~~~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 127 (354)
T 2rau_A 48 GGNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWI 127 (354)
T ss_dssp CCEEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTCCGGGGGGGTTCSHHHHH
T ss_pred CCCCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCcccccccccccCCcHHHHH
Confidence 456899999997665431 0122 456788889999999999998765321110 000 00001235
Q ss_pred hHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC-CCceeEEEecCCc
Q 006375 467 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPF 519 (648)
Q Consensus 467 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~~~a~v~~~~~ 519 (648)
+|+.++++++.++ .+.+++.++|+|+||.+++.++.++ |++++++|+.++.
T Consensus 128 ~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~~ 179 (354)
T 2rau_A 128 SDIKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGG 179 (354)
T ss_dssp HHHHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESCS
T ss_pred HHHHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEeccc
Confidence 7888888888765 3447899999999999999999998 9999999998543
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-13 Score=139.75 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=75.2
Q ss_pred CCcEEEEecCCCCCCCCCC-CchhHHHHHHCCCEEEEEc----cCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc
Q 006375 405 SDPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQ----IRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~----~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 479 (648)
..|+||++||..+....+. |......| .+||.|+.+| +||.|..... ...+|+.+.++++.+.
T Consensus 37 ~~~~vvllHG~~~~~~~~~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G~G~S~~~-----------~~~~d~~~~~~~l~~~ 104 (335)
T 2q0x_A 37 ARRCVLWVGGQTESLLSFDYFTNLAEEL-QGDWAFVQVEVPSGKIGSGPQDHA-----------HDAEDVDDLIGILLRD 104 (335)
T ss_dssp SSSEEEEECCTTCCTTCSTTHHHHHHHH-TTTCEEEEECCGGGBTTSCSCCHH-----------HHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCccccchhHHHHHHHHH-HCCcEEEEEeccCCCCCCCCcccc-----------CcHHHHHHHHHHHHHH
Confidence 3578999999544333222 23344455 6899999995 5787765321 2347888889988774
Q ss_pred CCCCCCeEEEEeeChhHHHHHHHHh--hCCCceeEEEecCCccc
Q 006375 480 CYCTKEKLCIEGRSAGGLLIGAVLN--MRPDLFKAAVAAVPFVD 521 (648)
Q Consensus 480 ~~~d~~~i~i~G~S~GG~l~~~~~~--~~p~~~~a~v~~~~~~d 521 (648)
.+.+++.++|+||||.+++.++. ++|++++++|+.+|..+
T Consensus 105 --l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~ 146 (335)
T 2q0x_A 105 --HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCD 146 (335)
T ss_dssp --SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCC
T ss_pred --cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCccc
Confidence 34579999999999999999988 57999999999887644
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=152.55 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=89.0
Q ss_pred EEEeCCCCeEEeEEEEEeeCccccC-CCCcEEEEecCCCCCCCCCC-CchhHH---HHHHCCCEEEEEccCCC--CCCCh
Q 006375 379 KWASASDGTQIPICIVYRKNLVKLD-GSDPLLLYGYGSYEICNDPA-FNSSRL---SLLDRGFIFAIAQIRGG--GELGR 451 (648)
Q Consensus 379 ~~~~s~~g~~i~~~l~~~~~~~~~~-~~~P~vl~~hGg~~~~~~~~-~~~~~~---~l~~~G~~v~~~~~rG~--g~~g~ 451 (648)
-.+...+|.++.+.-++-...-..+ .+.|+||++||..+...... |...+. .|+.+||.|+++|.||+ |..+.
T Consensus 81 ~~~~~~~g~~~~g~~l~y~~~G~~~~~~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~~~G~S~~ 160 (444)
T 2vat_A 81 SLFTLESGVILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSAGP 160 (444)
T ss_dssp EEEECTTSCEEEEEEEEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSSST
T ss_pred CCeecCCCCEecceeEEEEEecCCCCCCCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCCCCCCCCC
Confidence 3455566766665433322220111 23589999999776654311 333332 35578999999999994 43321
Q ss_pred hhhhc--cc-----ccCCCCcHhHHHHHHHHHHHcCCCCCCe-EEEEeeChhHHHHHHHHhhCCCceeEEEecCCccc
Q 006375 452 QWYEN--GK-----FLKKKNTFTDFIACAEYLIKNCYCTKEK-LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 521 (648)
Q Consensus 452 ~~~~~--~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d 521 (648)
.-... +. ......+++|+.+.+..+++. ...++ +.++|+||||.+++.++.++|++++++|+.++...
T Consensus 161 ~~~~~~~~~~~~~~~~f~~~t~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~ 236 (444)
T 2vat_A 161 CSPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCR 236 (444)
T ss_dssp TSBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSB
T ss_pred CCCCcccccccccccccccccHHHHHHHHHHHHHh--cCCccceEEEEECHHHHHHHHHHHhChHhhheEEEEecccc
Confidence 10000 00 001124677887777776654 23367 99999999999999999999999999999888654
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=128.26 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=113.7
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
++.|.||++||..+.... .|...+..++..+ +.++.+|.+ ...++++.+.+..+++. .+
T Consensus 15 g~~~~vv~~HG~~~~~~~-~~~~~~~~~~~~~---~~v~~~~~~---------------~~~~~~~~~~~~~~~~~--~~ 73 (191)
T 3bdv_A 15 SQQLTMVLVPGLRDSDDE-HWQSHWERRFPHW---QRIRQREWY---------------QADLDRWVLAIRRELSV--CT 73 (191)
T ss_dssp HTTCEEEEECCTTCCCTT-SHHHHHHHHCTTS---EECCCSCCS---------------SCCHHHHHHHHHHHHHT--CS
T ss_pred CCCceEEEECCCCCCchh-hHHHHHHHhcCCe---EEEeccCCC---------------CcCHHHHHHHHHHHHHh--cC
Confidence 346899999997654422 3433333333333 345666532 23456777777766664 23
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCC
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVK 563 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~ 563 (648)
+++.++|+|+||.+++.++.++|++++++|+.+|..+....+ +. ...+.
T Consensus 74 -~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~-----------------~~-------------~~~~~ 122 (191)
T 3bdv_A 74 -QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFEI-----------------DD-------------RIQAS 122 (191)
T ss_dssp -SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGGTC-----------------TT-------------TSCSS
T ss_pred -CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccccC-----------------cc-------------ccccc
Confidence 799999999999999999999999999999999976543210 00 03345
Q ss_pred CCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC----chHHHHHHHHHHHHHHHHh
Q 006375 564 AQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS----GRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 564 ~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~~fl~~~ 636 (648)
++++| +|+++|++|..||+.+++++.+.+ ..++++++ ++||.... ...+.+ ..+.+||.+.
T Consensus 123 ~~~~P-~lii~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~---~~gH~~~~~~~~~~~~~~---~~i~~fl~~~ 187 (191)
T 3bdv_A 123 PLSVP-TLTFASHNDPLMSFTRAQYWAQAW-----DSELVDVG---EAGHINAEAGFGPWEYGL---KRLAEFSEIL 187 (191)
T ss_dssp CCSSC-EEEEECSSBTTBCHHHHHHHHHHH-----TCEEEECC---SCTTSSGGGTCSSCHHHH---HHHHHHHHTT
T ss_pred cCCCC-EEEEecCCCCcCCHHHHHHHHHhc-----CCcEEEeC---CCCcccccccchhHHHHH---HHHHHHHHHh
Confidence 66788 999999999999999998888876 23445554 88997644 223222 3456777654
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=138.46 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=77.5
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||.++.. ..|...+..|+++||.|+++|.||.|.....- .....+++++.+.+..+++.- +.+
T Consensus 46 g~~vvllHG~~~~~--~~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~~------~~~~~~~~~~a~dl~~ll~~l--~~~ 115 (297)
T 2xt0_A 46 EHTFLCLHGEPSWS--FLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPT------DDAVYTFGFHRRSLLAFLDAL--QLE 115 (297)
T ss_dssp SCEEEEECCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCEES------CGGGCCHHHHHHHHHHHHHHH--TCC
T ss_pred CCeEEEECCCCCcc--eeHHHHHHHHHhCCcEEEEeCCCCCCCCCCCC------CcccCCHHHHHHHHHHHHHHh--CCC
Confidence 47899999976543 34666677888889999999999998764210 001234566665555555432 236
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
++.++|+||||.+++.++.++|++++++|+..+.
T Consensus 116 ~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~ 149 (297)
T 2xt0_A 116 RVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTA 149 (297)
T ss_dssp SEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCC
T ss_pred CEEEEEECchHHHHHHHHHhChHHhcEEEEECCC
Confidence 8999999999999999999999999999988764
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-13 Score=153.60 Aligned_cols=211 Identities=11% Similarity=0.080 Sum_probs=139.0
Q ss_pred eEEeCCCCCEEEEEEeCCC-------------------------------CeEEEEEEEECCC---C---Ceeeccc---
Q 006375 85 CFQVSPDNKLVAYAEDTKG-------------------------------DEIYTVYVIDIET---G---TPVGKPL--- 124 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G-------------------------------~e~~~l~v~dl~~---g---~~~~~~~--- 124 (648)
.+.|||||++|||.....+ +...+|+++|+++ + +.+....
T Consensus 175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~ 254 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (740)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence 4889999999999863322 2245899999999 8 4433222
Q ss_pred ----cCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCC-----CcEEEEeecCCCeE-----EEEEeCCCCcEE
Q 006375 125 ----VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQS-----NDICLYHEKDDIYS-----LGLQASESKKFL 189 (648)
Q Consensus 125 ----~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~~~~~~-----~~~~~s~Dg~~l 189 (648)
......++||||| .+++.... .....+|+.+++.++.. ....++++....+. ..+.|||||++|
T Consensus 255 ~~~~~~~~~~~~wspdg~~~~~~~~r-~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 255 MLIGDHYLCDVTWATQERISLQWLRR-IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp HHTSCEEEEEEEEEETTEEEEEEEES-STTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred CCCCCeEEEEEEEeCCCeEEEEEeCC-CCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence 1224569999999 56555443 33345699999988741 12234334333332 257899999998
Q ss_pred E-EEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEecc--CCCCCcEEEEEeCCCCCcceeEecCC-
Q 006375 190 F-IASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRS--DELFNSELLACPVDNTSETTVLIPHR- 265 (648)
Q Consensus 190 ~-~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~- 265 (648)
+ +.+...+..+||++|+++++ .+.|+.....+...+++||+.|||.++. ++....+||++++++. ..+..++..
T Consensus 334 ~~~~s~~~G~~~l~~~~~~~~~-~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~-~~~~~lt~~~ 411 (740)
T 4a5s_A 334 YKIISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDY-TKVTCLSCEL 411 (740)
T ss_dssp EEEEECTTSCEEEEEEETTCSS-CEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEE-EEEEESSTTT
T ss_pred EEEEEcCCCceEEEEEECCCCc-eEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCC-Ccceeecccc
Confidence 8 66666677999999999987 7888876544444456779999999987 5556789999999763 222123311
Q ss_pred --CCcccceE--EEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 266 --ESVKLQDI--QLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 266 --~~~~~~~~--~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
.......+ +++++++++.+...+.+.+++++.+
T Consensus 412 ~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 412 NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 11123334 4455677777666556778888766
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=143.20 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=84.5
Q ss_pred CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCC
Q 006375 385 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN 464 (648)
Q Consensus 385 ~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~ 464 (648)
+|.++..... +. .+.|+||++||..+... .|......| .+||.|+++|+||.|..... ....
T Consensus 18 ~g~~l~~~~~---g~----~~~~~vl~lHG~~~~~~--~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~--------~~~~ 79 (299)
T 3g9x_A 18 LGERMHYVDV---GP----RDGTPVLFLHGNPTSSY--LWRNIIPHV-APSHRCIAPDLIGMGKSDKP--------DLDY 79 (299)
T ss_dssp TTEEEEEEEE---SC----SSSCCEEEECCTTCCGG--GGTTTHHHH-TTTSCEEEECCTTSTTSCCC--------CCCC
T ss_pred CCeEEEEEec---CC----CCCCEEEEECCCCccHH--HHHHHHHHH-ccCCEEEeeCCCCCCCCCCC--------CCcc
Confidence 6777765422 11 22578999999765443 355555566 46999999999998865321 1135
Q ss_pred cHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 465 TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 465 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
.++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+.++..
T Consensus 80 ~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 133 (299)
T 3g9x_A 80 FFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIR 133 (299)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECC
T ss_pred cHHHHHHHHHHHHHH--hCCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCc
Confidence 677777777777665 244689999999999999999999999999999887443
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-14 Score=138.16 Aligned_cols=105 Identities=17% Similarity=0.214 Sum_probs=77.7
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
..|.||++||..++. ..|......|.++||.|+++|.||.|.....- ....+++++.+.+..+++.-. ..
T Consensus 9 ~g~~vvllHG~~~~~--~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~l~-~~ 78 (264)
T 2wfl_A 9 QQKHFVLVHGGCLGA--WIWYKLKPLLESAGHKVTAVDLSAAGINPRRL-------DEIHTFRDYSEPLMEVMASIP-PD 78 (264)
T ss_dssp CCCEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHHHHHHHHHHHSC-TT
T ss_pred CCCeEEEECCCcccc--chHHHHHHHHHhCCCEEEEeecCCCCCCCCCc-------ccccCHHHHHHHHHHHHHHhC-CC
Confidence 457899999975443 34666677888889999999999998764321 112356666666555554321 12
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
+++.++||||||.++..++.++|++++++|+..+.
T Consensus 79 ~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~ 113 (264)
T 2wfl_A 79 EKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAM 113 (264)
T ss_dssp CCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSC
T ss_pred CCeEEEEeChHHHHHHHHHHhChhhhceeEEEeec
Confidence 68999999999999999999999999999988763
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.9e-15 Score=150.16 Aligned_cols=205 Identities=15% Similarity=0.111 Sum_probs=121.6
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|+||++||..+... .|...+.. .||.|+++|+||.|..... ......++++.+.+..+++. .+.+
T Consensus 81 ~~~vv~~hG~~~~~~--~~~~~~~~---lg~~Vi~~D~~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~~~ 146 (330)
T 3p2m_A 81 APRVIFLHGGGQNAH--TWDTVIVG---LGEPALAVDLPGHGHSAWR-------EDGNYSPQLNSETLAPVLRE--LAPG 146 (330)
T ss_dssp CCSEEEECCTTCCGG--GGHHHHHH---SCCCEEEECCTTSTTSCCC-------SSCBCCHHHHHHHHHHHHHH--SSTT
T ss_pred CCeEEEECCCCCccc--hHHHHHHH---cCCeEEEEcCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHH--hCCC
Confidence 578999999765432 24433333 3999999999998765321 12234566777666666654 2457
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc--CCCC---------CCCcccc----ccc--CCC-CCH
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML--DPTI---------PLTTAEW----EEW--GDP-WKE 547 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~--~~~~---------~~~~~~~----~~~--g~~-~~~ 547 (648)
++.++|+|+||.+++.++.++|++++++|+.+|......... .... ......+ ..+ ..+ ...
T Consensus 147 ~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (330)
T 3p2m_A 147 AEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHGEREFPSFQAMLDLTIAAAPHRDV 226 (330)
T ss_dssp CCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTCC-----------CCBSCHHHHHHHHHHHCTTSCH
T ss_pred CcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhhhhhhhhhhhcCCccccCHHHHHHHHHhcCCCCCH
Confidence 899999999999999999999999999999987654221100 0000 0000000 000 011 111
Q ss_pred HHH-HHHHcC-------------Cc----------cccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCC-e
Q 006375 548 EFY-FYMKSY-------------SP----------VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN-I 602 (648)
Q Consensus 548 ~~~-~~~~~~-------------sp----------~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~-~ 602 (648)
... ..+... .. ...+.++++| +|+++|++|..||+..+.++.+.+.. .+ +
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vLii~G~~D~~v~~~~~~~l~~~~~~----~~~~ 301 (330)
T 3p2m_A 227 KSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAP-ITLVRGGSSGFVTDQDTAELHRRATH----FRGV 301 (330)
T ss_dssp HHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSC-EEEEEETTCCSSCHHHHHHHHHHCSS----EEEE
T ss_pred HHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCC-EEEEEeCCCCCCCHHHHHHHHHhCCC----CeeE
Confidence 111 111100 00 1234566888 99999999999998888877766542 23 4
Q ss_pred EEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 603 LLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 603 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
++++ ++||+......+.+.+ .+.+||.
T Consensus 302 ~~i~---~~gH~~~~e~p~~~~~--~i~~fl~ 328 (330)
T 3p2m_A 302 HIVE---KSGHSVQSDQPRALIE--IVRGVLD 328 (330)
T ss_dssp EEET---TCCSCHHHHCHHHHHH--HHHHHTT
T ss_pred EEeC---CCCCCcchhCHHHHHH--HHHHHHh
Confidence 5554 8899764443333322 3456664
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-14 Score=141.30 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=85.8
Q ss_pred CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCC
Q 006375 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 462 (648)
Q Consensus 383 s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 462 (648)
..+|.++.... . ++.|+||++||..+... .|...+..|.+ ||.|+++|.||.|.....-.. ....
T Consensus 19 ~~~g~~l~~~~-----~----g~~~~vv~lHG~~~~~~--~~~~~~~~l~~-~~~v~~~D~~G~G~S~~~~~~---~~~~ 83 (306)
T 3r40_A 19 NTSSGRIFARV-----G----GDGPPLLLLHGFPQTHV--MWHRVAPKLAE-RFKVIVADLPGYGWSDMPESD---EQHT 83 (306)
T ss_dssp CCTTCCEEEEE-----E----ECSSEEEEECCTTCCGG--GGGGTHHHHHT-TSEEEEECCTTSTTSCCCCCC---TTCG
T ss_pred EeCCEEEEEEE-----c----CCCCeEEEECCCCCCHH--HHHHHHHHhcc-CCeEEEeCCCCCCCCCCCCCC---cccC
Confidence 45777776542 1 23479999999765443 36666667766 999999999998865432110 0001
Q ss_pred CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 463 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 463 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
..+++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+.+|.
T Consensus 84 ~~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 138 (306)
T 3r40_A 84 PYTKRAMAKQLIEAMEQ--LGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDIL 138 (306)
T ss_dssp GGSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCCHHHHHHHHHHHHHH--hCCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCC
Confidence 24567777776666654 23468999999999999999999999999999999864
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-12 Score=135.24 Aligned_cols=211 Identities=13% Similarity=0.059 Sum_probs=135.2
Q ss_pred eeEEeCCCCCEEEEEEeCC-----------------CCeEEEEEEEECCCCCeeeccc-cCccceeEEec-CC-eEEEEE
Q 006375 84 GCFQVSPDNKLVAYAEDTK-----------------GDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAG-NE-ALVYIT 143 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~-----------------G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~Wsp-Dg-~l~y~~ 143 (648)
..+.+||||++++...... .+...+|+++|+++|+...... ......+.||| || .|+|..
T Consensus 128 ~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~ 207 (388)
T 3pe7_A 128 GTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCH 207 (388)
T ss_dssp EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEE
T ss_pred cceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEE
Confidence 3456699999998654211 1224789999999998765432 23345699999 99 898887
Q ss_pred eCCC-CCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcccccc--EEEEEECCCCCceeEeeeccc
Q 006375 144 MDEI-LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITR--FVFYLDVSKPEELRVLTPRVV 220 (648)
Q Consensus 144 ~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~--~l~~~dl~~~~~~~~l~~~~~ 220 (648)
.... ....+||.+++.++ +...+...........+.|||||++|++.+...+.. .||++|+++++ .+.+.....
T Consensus 208 ~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~ 284 (388)
T 3pe7_A 208 EGPHDLVDARMWLINEDGT--NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE-NRQLTSMPA 284 (388)
T ss_dssp CSCTTTSSCSEEEEETTSC--CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC-EEEEEEECC
T ss_pred ecCCCCCcceEEEEeCCCC--ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc-eEEEEcCCC
Confidence 6321 22457999998765 233333322222445688999999998877655443 59999999987 655544222
Q ss_pred c-------eeeeEeecCCEEEEEeccC----CCCCcEEEEEeCCCCCcceeEecCCC-----------CcccceEEEeCC
Q 006375 221 G-------VDTAASHRGNHFFITRRSD----ELFNSELLACPVDNTSETTVLIPHRE-----------SVKLQDIQLFID 278 (648)
Q Consensus 221 ~-------~~~~~s~dg~~l~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 278 (648)
. ....|+|||+.|++..... ...+..|+++|+++ +..+.+..+.. ...-..++++++
T Consensus 285 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~ 363 (388)
T 3pe7_A 285 CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN-GTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDK 363 (388)
T ss_dssp EEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT-TEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC-CceEEeccccCcccccccccccCCCCccCCCCCC
Confidence 0 0125999999999876531 13456899999987 33333444432 122234556667
Q ss_pred EEEEEEecCCeeEEEEEEcC
Q 006375 279 HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 279 ~l~~~~~~~~~~~l~v~~~~ 298 (648)
.+++....++..+|++++++
T Consensus 364 ~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 364 QILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp EEEEEECTTSSCEEEEEECC
T ss_pred EEEEEecCCCceeEEEEECC
Confidence 88888888888899988876
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8.6e-14 Score=141.78 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=74.4
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||.++.. ..|...+..|+++||.|+++|.||.|.....-. ......+++++.+.+..+++.-..+.+
T Consensus 31 g~~vvllHG~~~~~--~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~~----~~~~~~~~~~~a~dl~~~l~~l~~~~~ 104 (328)
T 2cjp_A 31 GPTILFIHGFPELW--YSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPL----NDPSKFSILHLVGDVVALLEAIAPNEE 104 (328)
T ss_dssp SSEEEEECCTTCCG--GGGHHHHHHHHTTTCEEEEECCTTSTTCBCCCT----TCGGGGSHHHHHHHHHHHHHHHCTTCS
T ss_pred CCEEEEECCCCCch--HHHHHHHHHHHHCCcEEEEECCCCCCCCCCcCc----CCcccccHHHHHHHHHHHHHHhcCCCC
Confidence 47899999976543 346666777888899999999999887642200 000112344444444443332110247
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
++.++|+||||.+++.++.++|++++++|+..+
T Consensus 105 ~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~ 137 (328)
T 2cjp_A 105 KVFVVAHDWGALIAWHLCLFRPDKVKALVNLSV 137 (328)
T ss_dssp SEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred CeEEEEECHHHHHHHHHHHhChhheeEEEEEcc
Confidence 899999999999999999999999999998764
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.2e-14 Score=137.09 Aligned_cols=222 Identities=15% Similarity=0.141 Sum_probs=131.4
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCC
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 463 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 463 (648)
.+|.++.....-+ .+.+.|+||++||..+... .|...+..|. .+|.|+++|.||.|..... ...
T Consensus 9 ~~g~~l~y~~~g~-----~~~~~~~vvllHG~~~~~~--~~~~~~~~L~-~~~~vi~~D~~G~G~S~~~--------~~~ 72 (266)
T 2xua_A 9 VNGTELHYRIDGE-----RHGNAPWIVLSNSLGTDLS--MWAPQVAALS-KHFRVLRYDTRGHGHSEAP--------KGP 72 (266)
T ss_dssp CSSSEEEEEEESC-----SSSCCCEEEEECCTTCCGG--GGGGGHHHHH-TTSEEEEECCTTSTTSCCC--------SSC
T ss_pred ECCEEEEEEEcCC-----ccCCCCeEEEecCccCCHH--HHHHHHHHHh-cCeEEEEecCCCCCCCCCC--------CCC
Confidence 3677776542211 1112589999999554432 4666666665 4699999999998865421 112
Q ss_pred CcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccc--cc-------CCCCCCC
Q 006375 464 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT--ML-------DPTIPLT 534 (648)
Q Consensus 464 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~--~~-------~~~~~~~ 534 (648)
.+++++.+.+..+++.- ..+++.++|+||||.+++.++.++|++++++|+..+....... +. .......
T Consensus 73 ~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
T 2xua_A 73 YTIEQLTGDVLGLMDTL--KIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTEGMHAL 150 (266)
T ss_dssp CCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHHHHHHhc--CCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhcChHHH
Confidence 45666666666555542 2368999999999999999999999999999988765321000 00 0000000
Q ss_pred ccc-ccccC-------CC------------CCHHH----HHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHH
Q 006375 535 TAE-WEEWG-------DP------------WKEEF----YFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFV 590 (648)
Q Consensus 535 ~~~-~~~~g-------~~------------~~~~~----~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~ 590 (648)
... ...+- ++ ..+.. ...+..+.....+.++++| +|+++|++|..+|+..++++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lvi~G~~D~~~~~~~~~~~~ 229 (266)
T 2xua_A 151 ADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAPGIKVP-ALVISGTHDLAATPAQGRELA 229 (266)
T ss_dssp HHHHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGGGCCSC-EEEEEETTCSSSCHHHHHHHH
T ss_pred HHHHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhccCCCC-EEEEEcCCCCcCCHHHHHHHH
Confidence 000 00000 00 01111 1112233444556777898 999999999999988887777
Q ss_pred HHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 591 AKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 591 ~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
+.+.. .+++++ + +||+...+..+.+.+ .+.+||.
T Consensus 230 ~~~~~----~~~~~~---~-~gH~~~~e~p~~~~~--~i~~fl~ 263 (266)
T 2xua_A 230 QAIAG----ARYVEL---D-ASHISNIERADAFTK--TVVDFLT 263 (266)
T ss_dssp HHSTT----CEEEEE---S-CCSSHHHHTHHHHHH--HHHHHHT
T ss_pred HhCCC----CEEEEe---c-CCCCchhcCHHHHHH--HHHHHHH
Confidence 66542 344444 3 799765444443332 4567764
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-14 Score=138.53 Aligned_cols=208 Identities=14% Similarity=0.161 Sum_probs=118.9
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
..|.||++||..+... .|......|.++ |.|+++|.||.|..... ...+++++.+.+..+++. .+.
T Consensus 15 ~~~~vvllHG~~~~~~--~w~~~~~~L~~~-~~via~Dl~G~G~S~~~---------~~~~~~~~a~dl~~~l~~--l~~ 80 (255)
T 3bf7_A 15 NNSPIVLVHGLFGSLD--NLGVLARDLVND-HNIIQVDVRNHGLSPRE---------PVMNYPAMAQDLVDTLDA--LQI 80 (255)
T ss_dssp CCCCEEEECCTTCCTT--TTHHHHHHHTTT-SCEEEECCTTSTTSCCC---------SCCCHHHHHHHHHHHHHH--HTC
T ss_pred CCCCEEEEcCCcccHh--HHHHHHHHHHhh-CcEEEecCCCCCCCCCC---------CCcCHHHHHHHHHHHHHH--cCC
Confidence 3578999999765543 466666666654 99999999998865421 023445555444444432 123
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCC--cccccc-------cc--cCCCCCCCcccccc-cCC-CCCHHHHH
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP--FVDVLT-------TM--LDPTIPLTTAEWEE-WGD-PWKEEFYF 551 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~--~~d~~~-------~~--~~~~~~~~~~~~~~-~g~-~~~~~~~~ 551 (648)
+++.++|+||||.+++.++.++|++++++|+..+ ...... .+ .............+ +.. ..++....
T Consensus 81 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (255)
T 3bf7_A 81 DKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ 160 (255)
T ss_dssp SCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHTTTCCCHHHHH
T ss_pred CCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHhhhcchhHHHH
Confidence 6899999999999999999999999999988642 211000 00 00000000000000 000 00111000
Q ss_pred HH--------------------HcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCC
Q 006375 552 YM--------------------KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 611 (648)
Q Consensus 552 ~~--------------------~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 611 (648)
++ ........+.++++| +|+++|++|..+++..+.++.+.+.. .+++++ +++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~l~i~G~~D~~~~~~~~~~~~~~~~~----~~~~~i---~~~ 232 (255)
T 3bf7_A 161 FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHP-ALFIPGGNSPYVSEQYRDDLLAQFPQ----ARAHVI---AGA 232 (255)
T ss_dssp HHHTTEETTEESSCHHHHHHTHHHHHCCCCCCCCCSC-EEEECBTTCSTTCGGGHHHHHHHCTT----EEECCB---TTC
T ss_pred HHHHhccCCceeecHHHHHhhhhhccccccccccCCC-eEEEECCCCCCCCHHHHHHHHHHCCC----CeEEEe---CCC
Confidence 00 000001234567888 99999999999998888777655432 233344 489
Q ss_pred CccCCCchHHHHHHHHHHHHHHHHh
Q 006375 612 GHFSKSGRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 612 gH~~~~~~~~~~~~~~~~~~fl~~~ 636 (648)
||+...+..+.+.+ .+.+||.+|
T Consensus 233 gH~~~~e~p~~~~~--~i~~fl~~~ 255 (255)
T 3bf7_A 233 GHWVHAEKPDAVLR--AIRRYLNDH 255 (255)
T ss_dssp CSCHHHHCHHHHHH--HHHHHHHTC
T ss_pred CCccccCCHHHHHH--HHHHHHhcC
Confidence 99765444443333 456787653
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-13 Score=135.37 Aligned_cols=210 Identities=16% Similarity=0.111 Sum_probs=126.3
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||.++... .|...+..|+++||.|+++|.||.|.....- .....+++++.+.+..+++.- +-+
T Consensus 47 g~~vvllHG~~~~~~--~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~~------~~~~y~~~~~a~dl~~ll~~l--~~~ 116 (310)
T 1b6g_A 47 EDVFLCLHGEPTWSY--LYRKMIPVFAESGARVIAPDFFGFGKSDKPV------DEEDYTFEFHRNFLLALIERL--DLR 116 (310)
T ss_dssp SCEEEECCCTTCCGG--GGTTTHHHHHHTTCEEEEECCTTSTTSCEES------CGGGCCHHHHHHHHHHHHHHH--TCC
T ss_pred CCEEEEECCCCCchh--hHHHHHHHHHhCCCeEEEeCCCCCCCCCCCC------CcCCcCHHHHHHHHHHHHHHc--CCC
Confidence 478999999765443 4566677888889999999999988764210 011235566666555555442 226
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccc--ccc---------cc----------c--CCCCC----------
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD--VLT---------TM----------L--DPTIP---------- 532 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d--~~~---------~~----------~--~~~~~---------- 532 (648)
++.++|+||||.+++.++.++|++++++|+..+... ... .. . .+..+
T Consensus 117 ~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (310)
T 1b6g_A 117 NITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAP 196 (310)
T ss_dssp SEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTTHHHHHHHHHSCSSCCHHHHHHHHST
T ss_pred CEEEEEcChHHHHHHHHHHhChHhheEEEEeccccccCCccccchhhhhhccchHHHHHHHHhccCchhhhhhHHhhcCC
Confidence 899999999999999999999999999998876431 000 00 0 00000
Q ss_pred -CCcccccccCCC----C-CHHHHHHHHc-CCc-----------cccCC-CCCCCeEEEeecCCCCccCCchHHHHHHHH
Q 006375 533 -LTTAEWEEWGDP----W-KEEFYFYMKS-YSP-----------VDNVK-AQNYPHILVTAGLNDPRVMYSEPAKFVAKL 593 (648)
Q Consensus 533 -~~~~~~~~~g~~----~-~~~~~~~~~~-~sp-----------~~~~~-~~~~P~~li~~g~~D~~v~~~~~~~~~~~l 593 (648)
+.......|..+ . ......+... ..+ ...+. ++++| +|+++|++|..+| ..+.++.+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P-~Lvi~G~~D~~~~-~~~~~~~~~i 274 (310)
T 1b6g_A 197 TLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAISFWQNDWNGQ-TFMAIGMKDKLLG-PDVMYPMKAL 274 (310)
T ss_dssp TCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSE-EEEEEETTCSSSS-HHHHHHHHHH
T ss_pred CCCHHHHHHHhcccCCccchHHHHHHHHHhcccccchhhhhhhHhhhhhccccCc-eEEEeccCcchhh-hHHHHHHHhc
Confidence 000000001000 0 0000000000 000 12244 67888 9999999999998 8888887777
Q ss_pred HhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 594 REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
.... ...++++ ++||+... +++.+.+ .+.+||.+
T Consensus 275 p~~~--~~~i~~~---~~GH~~~~-~p~~~~~--~i~~Fl~~ 308 (310)
T 1b6g_A 275 INGC--PEPLEIA---DAGHFVQE-FGEQVAR--EALKHFAE 308 (310)
T ss_dssp STTC--CCCEEET---TCCSCGGG-GHHHHHH--HHHHHHHH
T ss_pred cccc--ceeeecC---Ccccchhh-ChHHHHH--HHHHHHhc
Confidence 5432 1112224 89998776 6665554 45788764
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.4e-14 Score=137.74 Aligned_cols=213 Identities=13% Similarity=0.116 Sum_probs=124.8
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|+||++||..+... .|......|. ++|.|+++|+||.|.....-.. .....+++++.+.+..+++. .+.+
T Consensus 20 ~~~vvllHG~~~~~~--~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~~~~----~~~~~~~~~~a~dl~~~l~~--l~~~ 90 (271)
T 1wom_A 20 KASIMFAPGFGCDQS--VWNAVAPAFE-EDHRVILFDYVGSGHSDLRAYD----LNRYQTLDGYAQDVLDVCEA--LDLK 90 (271)
T ss_dssp SSEEEEECCTTCCGG--GGTTTGGGGT-TTSEEEECCCSCCSSSCCTTCC----TTGGGSHHHHHHHHHHHHHH--TTCS
T ss_pred CCcEEEEcCCCCchh--hHHHHHHHHH-hcCeEEEECCCCCCCCCCCccc----ccccccHHHHHHHHHHHHHH--cCCC
Confidence 378999999654433 3555455555 4799999999999875432100 01112455555555544443 2347
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc--cCCCCCC------------Ccccc------cccCCCC
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM--LDPTIPL------------TTAEW------EEWGDPW 545 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~--~~~~~~~------------~~~~~------~~~g~~~ 545 (648)
++.++|+||||.+++.++.++|++++++|+..|........ ....... ....| ...+.+.
T Consensus 91 ~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (271)
T 1wom_A 91 ETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPD 170 (271)
T ss_dssp CEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCTT
T ss_pred CeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999887642111000 0000000 00000 0012222
Q ss_pred CHHHHH----HHH---------------cCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEE
Q 006375 546 KEEFYF----YMK---------------SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 606 (648)
Q Consensus 546 ~~~~~~----~~~---------------~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 606 (648)
.++..+ .+. .......+.++++| +|+++|++|..+|+..+.++.+.+. ..++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lvi~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~ 245 (271)
T 1wom_A 171 RPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVP-SLILQCADDIIAPATVGKYMHQHLP----YSSLKQME 245 (271)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSC-EEEEEEETCSSSCHHHHHHHHHHSS----SEEEEEEE
T ss_pred chHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCC-EEEEEcCCCCcCCHHHHHHHHHHCC----CCEEEEeC
Confidence 221111 011 11222345677898 9999999999999877777766554 24566676
Q ss_pred ecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 607 CELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 607 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
++||+...+..+.+.+ .+.+||.+++
T Consensus 246 ---~~gH~~~~e~p~~~~~--~i~~fl~~~~ 271 (271)
T 1wom_A 246 ---ARGHCPHMSHPDETIQ--LIGDYLKAHV 271 (271)
T ss_dssp ---EESSCHHHHCHHHHHH--HHHHHHHHHC
T ss_pred ---CCCcCccccCHHHHHH--HHHHHHHhcC
Confidence 7899765444443333 4578887753
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-13 Score=135.14 Aligned_cols=125 Identities=19% Similarity=0.146 Sum_probs=84.4
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
+..+++..+|.++..... +. .+.|.||++||+++......+ ...|...||.|+++|.||.|.....
T Consensus 15 ~~~~~~~~~g~~l~~~~~---g~----~~g~~vvllHG~~~~~~~~~~---~~~~~~~~~~vi~~D~~G~G~S~~~---- 80 (317)
T 1wm1_A 15 DSGWLDTGDGHRIYWELS---GN----PNGKPAVFIHGGPGGGISPHH---RQLFDPERYKVLLFDQRGCGRSRPH---- 80 (317)
T ss_dssp EEEEEECSSSCEEEEEEE---EC----TTSEEEEEECCTTTCCCCGGG---GGGSCTTTEEEEEECCTTSTTCBST----
T ss_pred eeeEEEcCCCcEEEEEEc---CC----CCCCcEEEECCCCCcccchhh---hhhccccCCeEEEECCCCCCCCCCC----
Confidence 344566668877754311 11 123568999997664432211 2233357999999999998865321
Q ss_pred ccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 457 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
.......++++.+.+..+++.- +.+++.++|+||||.+++.++.++|++++++|+..+.
T Consensus 81 --~~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 139 (317)
T 1wm1_A 81 --ASLDNNTTWHLVADIERLREMA--GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIF 139 (317)
T ss_dssp --TCCTTCSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --cccccccHHHHHHHHHHHHHHc--CCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccC
Confidence 0112245677777777666642 3468999999999999999999999999999987754
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-12 Score=128.19 Aligned_cols=196 Identities=11% Similarity=0.125 Sum_probs=132.9
Q ss_pred EEEeeEEeCCCCCEEEEEEeCC----CCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCCCCCCceEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTK----GDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~----G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~ 155 (648)
..+..+++ ||++|||+.... +....+||++|+++++.... .....+.||||| .|+|...+......+||.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 45677888 999999986432 23367899999999986553 334459999999 999988754334567999
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcc------------------------ccccEEEEEECCCCCc
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES------------------------KITRFVFYLDVSKPEE 211 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~------------------------~~~~~l~~~dl~~~~~ 211 (648)
+++.++ +...+.... . ...+.|||||++|++.+.. .....||++|+++++
T Consensus 90 ~~~~~g--~~~~l~~~~--~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~- 163 (347)
T 2gop_A 90 ADLETL--SSKKILEAK--N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE- 163 (347)
T ss_dssp EETTTT--EEEEEEEES--E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE-
T ss_pred EECCCC--ceEEEEcCC--C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe-
Confidence 999876 334444333 2 5578999999999998743 114689999999886
Q ss_pred e-eEeeecccceeeeEeecCCEEEEEeccCCC----C-CcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEe
Q 006375 212 L-RVLTPRVVGVDTAASHRGNHFFITRRSDEL----F-NSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYER 285 (648)
Q Consensus 212 ~-~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~----~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (648)
. +.++. .......|+||| ++|.++.+.. . ..+|+.++ + +..+.+... .....++++++.+++...
T Consensus 164 ~~~~l~~-~~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~---~~~~~~spdg~~l~~~~~ 234 (347)
T 2gop_A 164 VIEEFEK-PRFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--D-GKEEKMFEK---VSFYAVDSDGERILLYGK 234 (347)
T ss_dssp EEEEEEE-ETTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--T-TEEEEEEEE---ESEEEEEECSSCEEEEEC
T ss_pred EEeeecC-CCcccccCCCCe--EEEEEecccccccccccccEEEeC--C-CceEEeccC---cceeeECCCCCEEEEEEc
Confidence 5 66655 233446799999 6676654321 1 56899999 3 333334443 223445777778877765
Q ss_pred cCC-----eeEEEEEE
Q 006375 286 EGG-----LQKITTYR 296 (648)
Q Consensus 286 ~~~-----~~~l~v~~ 296 (648)
... ...|++++
T Consensus 235 ~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD 250 (347)
T ss_dssp CSSSCCCSSCEEEEEC
T ss_pred cccCCccccceEEEEC
Confidence 432 35777776
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-12 Score=124.82 Aligned_cols=233 Identities=9% Similarity=-0.006 Sum_probs=147.9
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC-CCeeecc-cc--CccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGKP-LV--GVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~-g~~~~~~-~~--~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
+..+.|||||++|++..+ + .|+++|+++ ++..... .. .....++|+||| .|++...+ .....+||.++
T Consensus 44 v~~~~~spdg~~l~~~~~--~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-~~~~~~l~~~~ 116 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNSE--G----LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKV-EFGKSAIYLLP 116 (297)
T ss_dssp CEEEEECTTSSEEEEEET--T----EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECT-TTSSCEEEEEE
T ss_pred eEeeEECCCCCEEEEEcC--C----eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeC-CCCcceEEEEE
Confidence 457899999999999752 3 799999999 8765432 11 234569999999 78776643 23456799999
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFIT 236 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~ 236 (648)
+.++. ...+ .... ....+.|+|||++|++.........||.+++.++. .+.+...... ....|+|+|+.|++.
T Consensus 117 ~~~~~--~~~~-~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 117 STGGT--PRLM-TKNL--PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp TTCCC--CEEC-CSSS--SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEE
T ss_pred CCCCc--eEEe-ecCC--CccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEE
Confidence 87762 2222 2222 24467899999999987766666789999998876 6655544333 335699999999988
Q ss_pred eccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEE--eCCEEEEEEecC--------CeeEEEEEEcCCCCCcccc
Q 006375 237 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL--FIDHLAVYEREG--------GLQKITTYRLPAVGEPLKS 306 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~--------~~~~l~v~~~~~~g~~~~~ 306 (648)
+..+ ...+|+.++..+ +....+..+. ..+..+.+ +++.+++..... +...|++++++. +....
T Consensus 191 ~~~~--~~~~i~~~~~~~-~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~~~~ 263 (297)
T 2ojh_A 191 SSRT--GQMQIWRVRVDG-SSVERITDSA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG--GNVET 263 (297)
T ss_dssp ECTT--SSCEEEEEETTS-SCEEECCCCS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS--CSCEE
T ss_pred ecCC--CCccEEEECCCC-CCcEEEecCC--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC--CCcee
Confidence 7643 357899988765 2333233222 23444444 445676666543 346789998873 32211
Q ss_pred cCCCceeecCCCeeeeeCCCCcccccEEEEEEee
Q 006375 307 LQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSS 340 (648)
Q Consensus 307 l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss 340 (648)
+ ..++.....+..+.+++++..+++....
T Consensus 264 ~-----~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 264 L-----FDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp E-----EEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred e-----eccCCCCcccccceECCCCCEEEEEEec
Confidence 1 1111111124446677888877666543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-12 Score=147.08 Aligned_cols=253 Identities=11% Similarity=0.043 Sum_probs=153.1
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCe----EEEEEEEECCCCCeeeccc-cC---ccceeEEecCC-eEEEEEeCCCCCCceE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDE----IYTVYVIDIETGTPVGKPL-VG---VTASVEWAGNE-ALVYITMDEILRPDKA 153 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e----~~~l~v~dl~~g~~~~~~~-~~---~~~~~~WspDg-~l~y~~~~~~~~~~~l 153 (648)
+..++|||||++|||..+..+.. ..+|+++|+++++...... .. ....++||||| .|+|.+. .+|
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~------~~i 136 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE------NNI 136 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET------TEE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC------CeE
Confidence 56889999999999997654321 2589999999998643221 11 13459999999 9999864 369
Q ss_pred EEEECCCCCCCcEEEEeecCCCe-----------------EEEEEeCCCCcEEEEEEcccc-------------------
Q 006375 154 WLHKLEADQSNDICLYHEKDDIY-----------------SLGLQASESKKFLFIASESKI------------------- 197 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~s~Dg~~l~~~~~~~~------------------- 197 (648)
|++++.++. ...+........ ...+.|||||++|++.+....
T Consensus 137 ~~~~~~~g~--~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (723)
T 1xfd_A 137 YYCAHVGKQ--AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK 214 (723)
T ss_dssp EEESSSSSC--CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred EEEECCCCc--eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcce
Confidence 999998863 344443221111 136899999999998764321
Q ss_pred ------------ccEEEEEECCCCCceeEeeec------ccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcc
Q 006375 198 ------------TRFVFYLDVSKPEELRVLTPR------VVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSET 258 (648)
Q Consensus 198 ------------~~~l~~~dl~~~~~~~~l~~~------~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 258 (648)
...|+++|+++++..+.+... ... ....|||||+.|++.+++ +.....|+++|++++. .
T Consensus 215 ~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-~~~~~~i~~~d~~~g~-~ 292 (723)
T 1xfd_A 215 PYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR-AQNVSILTLCDATTGV-C 292 (723)
T ss_dssp EEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET-TSCEEEEEEEETTTCC-E
T ss_pred eccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC-CCCeEEEEEEeCCCCc-c
Confidence 238999999887622444432 111 235699999988777665 3455789999987633 3
Q ss_pred eeEec-CCCCc-c----cceEEEeCCEEEEE-EecCC----eeEEEEEEcCCCCCc---ccccCCCceeecCCCeeeee-
Q 006375 259 TVLIP-HRESV-K----LQDIQLFIDHLAVY-EREGG----LQKITTYRLPAVGEP---LKSLQGGKSVEFIDPVYSID- 323 (648)
Q Consensus 259 ~~~~~-~~~~~-~----~~~~~~~~~~l~~~-~~~~~----~~~l~v~~~~~~g~~---~~~l~~~~~i~~~~~~~~v~- 323 (648)
..++. ..... . -..|+++++.+++. ...++ ..+|+++++.. ++. ...++.. .+.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~l~~~--------~~~~~~ 363 (723)
T 1xfd_A 293 TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP-NSSNDNIQSITSG--------DWDVTK 363 (723)
T ss_dssp EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC-CSSSCCCCBSCCS--------SSCEEE
T ss_pred eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccC-CCCccceeEeecC--------CeEEEe
Confidence 22332 11111 1 22445556667765 55555 56788887322 332 3333211 11121
Q ss_pred CCCCcccccEEEEEEeeCCCC--CEEEEEECCCC
Q 006375 324 PSESVFSSRILRFHYSSLRTP--PSVYDYDMDMG 355 (648)
Q Consensus 324 ~~~~~~~~~~l~~~~ss~~~P--~~~~~~d~~~~ 355 (648)
.+.++++++.|+|..+. ..| ..+|.++..++
T Consensus 364 ~~~~spdg~~l~~~~~~-~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 364 ILAYDEKGNKIYFLSTE-DLPRRRQLYSANTVGN 396 (723)
T ss_dssp EEEEETTTTEEEEEESS-SCTTCCEEEEECSSTT
T ss_pred eeEEcCCCCEEEEEEcC-CCCcceEEEEEeCCCC
Confidence 13567888877665443 323 45777766543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-12 Score=144.38 Aligned_cols=254 Identities=12% Similarity=0.029 Sum_probs=162.1
Q ss_pred CCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec----cc--cC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 89 SPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK----PL--VG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 89 SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~----~~--~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
+|||++++|.....|.....||+++..+++.... .+ .+ ....++||||| .|+|...+......+|+.+++.
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 4999999999988776667899999887764321 11 11 24569999999 9999988665556689999999
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcccc-------------ccEEEEEECCCCC-ceeEeeecc--cc--
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI-------------TRFVFYLDVSKPE-ELRVLTPRV--VG-- 221 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~-------------~~~l~~~dl~~~~-~~~~l~~~~--~~-- 221 (648)
++.... ...... . ..++.|||||+.|++.+.... ..+||++++.++. ..+.+.... ..
T Consensus 160 tg~~~~-~~~~~~--~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~ 235 (710)
T 2xdw_A 160 GAKELP-DVLERV--K-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM 235 (710)
T ss_dssp TTEEEE-EEEEEE--C-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred CCCCCc-ccccCc--c-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence 873211 112221 1 235789999999999876544 4579999998875 223443322 11
Q ss_pred eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC------CC-cceeEecCCCCcccceEEEeCCEEEEEEecCC-eeEEE
Q 006375 222 VDTAASHRGNHFFITRRSDELFNSELLACPVDN------TS-ETTVLIPHRESVKLQDIQLFIDHLAVYEREGG-LQKIT 293 (648)
Q Consensus 222 ~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~l~ 293 (648)
....|||||++|++.+......+.+|+++|+++ +. ..+.+..+... ....++.+++.+++....++ ..+|+
T Consensus 236 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~ 314 (710)
T 2xdw_A 236 GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG-EYDYVTNEGTVFTFKTNRHSPNYRLI 314 (710)
T ss_dssp EEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEE
T ss_pred EEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCc-EEEEEeccCCEEEEEECCCCCCCEEE
Confidence 345699999999999875332357899999875 32 23334444333 23457778889888877654 56788
Q ss_pred EEEcCCCCC-cccccCCCceeecCCCe-eeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 294 TYRLPAVGE-PLKSLQGGKSVEFIDPV-YSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 294 v~~~~~~g~-~~~~l~~~~~i~~~~~~-~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+++++.... ..+ .+. +... ..+.++.+. +++.+++.... ..-.+++.+++.+|+
T Consensus 315 ~~d~~~~~~~~~~------~l~-~~~~~~~~~~~~~~-~~~~lv~~~~~-~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 315 NIDFTDPEESKWK------VLV-PEHEKDVLEWVACV-RSNFLVLCYLH-DVKNTLQLHDLATGA 370 (710)
T ss_dssp EEETTSCCGGGCE------EEE-CCCSSCEEEEEEEE-TTTEEEEEEEE-TTEEEEEEEETTTCC
T ss_pred EEeCCCCCcccce------ecc-CCCCCCeEEEEEEE-cCCEEEEEEEE-CCEEEEEEEECCCCC
Confidence 888874211 111 111 1111 123333333 34556666544 334578999987766
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=135.74 Aligned_cols=213 Identities=14% Similarity=0.098 Sum_probs=127.2
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||..+.. ..|...+..|.++||.|+++|.||.|.....- ....+++++.+.+..+++.-. ..+
T Consensus 4 ~~~vvllHG~~~~~--~~w~~~~~~L~~~g~rVia~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~l~-~~~ 73 (273)
T 1xkl_A 4 GKHFVLVHGACHGG--WSWYKLKPLLEAAGHKVTALDLAASGTDLRKI-------EELRTLYDYTLPLMELMESLS-ADE 73 (273)
T ss_dssp CCEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEECCCTTSTTCCCCG-------GGCCSHHHHHHHHHHHHHTSC-SSS
T ss_pred CCeEEEECCCCCCc--chHHHHHHHHHhCCCEEEEecCCCCCCCccCc-------ccccCHHHHHHHHHHHHHHhc-cCC
Confidence 36899999975443 34666677888889999999999998753211 112456777766666665421 136
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccc--------cccC--CCCCCCc-------------------c
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT--------TMLD--PTIPLTT-------------------A 536 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~--------~~~~--~~~~~~~-------------------~ 536 (648)
++.++|+||||.++..++.++|++++++|+.++...... .... ....+.. .
T Consensus 74 ~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (273)
T 1xkl_A 74 KVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGP 153 (273)
T ss_dssp CEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCH
T ss_pred CEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhccCCCCCccccccCH
Confidence 899999999999999999999999999998876421000 0000 0000000 0
Q ss_pred cc-cc-cCCCCCHHHHHHHHc-CCcc----------ccC---CCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCC
Q 006375 537 EW-EE-WGDPWKEEFYFYMKS-YSPV----------DNV---KAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDD 600 (648)
Q Consensus 537 ~~-~~-~g~~~~~~~~~~~~~-~sp~----------~~~---~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~ 600 (648)
.+ .. +.....++....... ..|. ..+ ...++| +|+++|++|..+|+..++++.+.+. ..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~G~~D~~~p~~~~~~~~~~~p----~~ 228 (273)
T 1xkl_A 154 KFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVK-RVYIVCTEDKGIPEEFQRWQIDNIG----VT 228 (273)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSC-EEEEEETTCTTTTHHHHHHHHHHHC----CS
T ss_pred HHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhhhCCCC-eEEEEeCCccCCCHHHHHHHHHhCC----CC
Confidence 00 00 000001111111000 0110 011 113678 9999999999999888888877664 23
Q ss_pred CeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 601 NILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 601 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
++++++ ++||....+.++.+.+ .+.+|+.+..+
T Consensus 229 ~~~~i~---~aGH~~~~e~P~~~~~--~i~~fl~~~~~ 261 (273)
T 1xkl_A 229 EAIEIK---GADHMAMLCEPQKLCA--SLLEIAHKYNM 261 (273)
T ss_dssp EEEEET---TCCSCHHHHSHHHHHH--HHHHHHHHCC-
T ss_pred eEEEeC---CCCCCchhcCHHHHHH--HHHHHHHHhcc
Confidence 556665 8999865555554444 45788876543
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-14 Score=141.36 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=84.9
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCC
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 463 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 463 (648)
.+|.++..... ++.|+||++||..+... .|...+..|+++ |.|+++|.||.|..... ...
T Consensus 17 ~~g~~l~~~~~---------g~~~~vv~lHG~~~~~~--~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~--------~~~ 76 (301)
T 3kda_A 17 VDGVKLHYVKG---------GQGPLVMLVHGFGQTWY--EWHQLMPELAKR-FTVIAPDLPGLGQSEPP--------KTG 76 (301)
T ss_dssp ETTEEEEEEEE---------ESSSEEEEECCTTCCGG--GGTTTHHHHTTT-SEEEEECCTTSTTCCCC--------SSC
T ss_pred eCCeEEEEEEc---------CCCCEEEEECCCCcchh--HHHHHHHHHHhc-CeEEEEcCCCCCCCCCC--------CCC
Confidence 47777765421 13579999999765543 356667777777 99999999998876432 123
Q ss_pred CcHhHHHHHHHHHHHcCCCCCCe-EEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 464 NTFTDFIACAEYLIKNCYCTKEK-LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 464 ~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
..++++.+.+..+++. .+.++ +.++|+|+||.+++.++.++|++++++|+.+|..
T Consensus 77 ~~~~~~~~~l~~~l~~--l~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 132 (301)
T 3kda_A 77 YSGEQVAVYLHKLARQ--FSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPI 132 (301)
T ss_dssp SSHHHHHHHHHHHHHH--HCSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCC
T ss_pred ccHHHHHHHHHHHHHH--cCCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCC
Confidence 4566666666665554 23356 9999999999999999999999999999998853
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=138.42 Aligned_cols=211 Identities=10% Similarity=-0.001 Sum_probs=125.0
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC-
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK- 484 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~- 484 (648)
.|+||++||..+... .|...+..|. ++|.|+++|+||.|.....-. ......+++++.+.+..+++. .+.
T Consensus 28 ~~~vv~lHG~~~~~~--~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~~----~~~~~~~~~~~~~~~~~~l~~--~~~~ 98 (297)
T 2qvb_A 28 GDAIVFQHGNPTSSY--LWRNIMPHLE-GLGRLVACDLIGMGASDKLSP----SGPDRYSYGEQRDFLFALWDA--LDLG 98 (297)
T ss_dssp SSEEEEECCTTCCGG--GGTTTGGGGT-TSSEEEEECCTTSTTSCCCSS----CSTTSSCHHHHHHHHHHHHHH--TTCC
T ss_pred CCeEEEECCCCchHH--HHHHHHHHHh-hcCeEEEEcCCCCCCCCCCCC----ccccCcCHHHHHHHHHHHHHH--cCCC
Confidence 489999999765443 2444455555 469999999999886532200 011124566766666666554 234
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCC----------CCCC---------------------
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP----------TIPL--------------------- 533 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~----------~~~~--------------------- 533 (648)
+++.++|+|+||.+++.++.++|++++++|+.+|........... ..+.
T Consensus 99 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (297)
T 2qvb_A 99 DHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMTWADWPPAVRGVFQGFRSPQGEPMALEHNIFVERVLPGAIL 178 (297)
T ss_dssp SCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHTSTTHHHHHHTTCHHHHTHHHHTCS
T ss_pred CceEEEEeCchHHHHHHHHHhChHhhheeeEeccccCCccCCCCChHHHHHHHHHhcccchhhhccccHHHHHHHhcccc
Confidence 789999999999999999999999999999998865421100000 0000
Q ss_pred ---Cccc---c-cccCCC-C-CHHHHHHHHcC--------------CccccCCCCCCCeEEEeecCCCCccCCchHHHHH
Q 006375 534 ---TTAE---W-EEWGDP-W-KEEFYFYMKSY--------------SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFV 590 (648)
Q Consensus 534 ---~~~~---~-~~~g~~-~-~~~~~~~~~~~--------------sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~ 590 (648)
.... + ..+..+ . ......++... +....+.++++| +|+++|++|..+|+..+.++.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~ 257 (297)
T 2qvb_A 179 RQLSDEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAEVVALVNEYRSWLEETDMP-KLFINAEPGAIITGRIRDYVR 257 (297)
T ss_dssp SCCCHHHHHHHHGGGCSSSGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCCSC-EEEEEEEECSSSCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhcCcccchhhHHHHHHhccccCCchhhHHHHHHHHhhccccccc-EEEEecCCCCcCCHHHHHHHH
Confidence 0000 0 000000 0 01111111211 112334556888 999999999999987776665
Q ss_pred HHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 591 AKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 591 ~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
+.+. . +++++ ++||+......+.+.+ .+.+||.++.
T Consensus 258 ~~~~----~-~~~~~----~~gH~~~~~~p~~~~~--~i~~fl~~~~ 293 (297)
T 2qvb_A 258 SWPN----Q-TEITV----PGVHFVQEDSPEEIGA--AIAQFVRRLR 293 (297)
T ss_dssp TSSS----E-EEEEE----EESSCGGGTCHHHHHH--HHHHHHHHHH
T ss_pred HHcC----C-eEEEe----cCccchhhhCHHHHHH--HHHHHHHHHh
Confidence 5443 2 34444 5799765555544433 4578887654
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-13 Score=133.24 Aligned_cols=104 Identities=11% Similarity=0.127 Sum_probs=77.8
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
+.|.||++||..+... .|...+..|++ +|.|+++|.||.|..... .....+++++.+.+..+++. .+.
T Consensus 15 ~g~~vvllHG~~~~~~--~~~~~~~~L~~-~~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~~~dl~~~l~~--l~~ 82 (269)
T 2xmz_A 15 TNQVLVFLHGFLSDSR--TYHNHIEKFTD-NYHVITIDLPGHGEDQSS-------MDETWNFDYITTLLDRILDK--YKD 82 (269)
T ss_dssp CSEEEEEECCTTCCGG--GGTTTHHHHHT-TSEEEEECCTTSTTCCCC-------TTSCCCHHHHHHHHHHHHGG--GTT
T ss_pred CCCeEEEEcCCCCcHH--HHHHHHHHHhh-cCeEEEecCCCCCCCCCC-------CCCccCHHHHHHHHHHHHHH--cCC
Confidence 3456999999766543 35555666665 599999999999865431 01124677777777766655 234
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
+++.++|+||||.+++.++.++|++++++|+..|..
T Consensus 83 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~ 118 (269)
T 2xmz_A 83 KSITLFGYSMGGRVALYYAINGHIPISNLILESTSP 118 (269)
T ss_dssp SEEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCS
T ss_pred CcEEEEEECchHHHHHHHHHhCchheeeeEEEcCCc
Confidence 799999999999999999999999999999988654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-12 Score=133.68 Aligned_cols=259 Identities=8% Similarity=-0.028 Sum_probs=147.6
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc-cCcc-ce-------------------eEEecCC-eEEEE
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVT-AS-------------------VEWAGNE-ALVYI 142 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~-~~-------------------~~WspDg-~l~y~ 142 (648)
.+.|||||++|||..... +|+++|+++++...... +... .. +.|+||+ .+++.
T Consensus 85 ~~~~spdg~~l~~~~~~~-----~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~ 159 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNEL-----NLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFA 159 (396)
T ss_dssp TCEECTTSSEEEEEETTT-----EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred cceECCCCCEEEEEEcCC-----cEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeee
Confidence 378999999999998642 69999999988654221 1110 00 2344444 43332
Q ss_pred EeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCC-CCcEEEEEEcccc---ccEEEEEECCCCCceeEeeec
Q 006375 143 TMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKI---TRFVFYLDVSKPEELRVLTPR 218 (648)
Q Consensus 143 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-Dg~~l~~~~~~~~---~~~l~~~dl~~~~~~~~l~~~ 218 (648)
.........+|+.+++.++ +...+... ......+.|+| ||++|++.+.... ..+||++|+++++ .+.+...
T Consensus 160 ~~~~~~~~~~l~~~d~~~g--~~~~~~~~--~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~ 234 (396)
T 3c5m_A 160 EFYHTNPTCRLIKVDIETG--ELEVIHQD--TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-VRKIKEH 234 (396)
T ss_dssp HHHHTCCCEEEEEEETTTC--CEEEEEEE--SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-CEESSCC
T ss_pred eeccCCCcceEEEEECCCC--cEEeeccC--CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-eeEeecc
Confidence 2101133467999999886 33344432 23345678999 8998888765322 1689999998876 6666553
Q ss_pred ccc---eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEE-eCCEEEEEEe---------
Q 006375 219 VVG---VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL-FIDHLAVYER--------- 285 (648)
Q Consensus 219 ~~~---~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------- 285 (648)
... ....|+|||+.|++.++..+.....|+++|+++. ..+.+.... ... ..+++ ++..+++...
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g-~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 235 AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL-ENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADA 311 (396)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC-CEEEEEECC-SEE-EEEECSSSSEEEEEECCC-------
T ss_pred CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC-CeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccc
Confidence 212 2246999999999998764433345999998763 333233222 222 34444 5554443221
Q ss_pred ----cCCeeEEEEEEcCCCCCcccccCCCce-eec--CCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEE
Q 006375 286 ----EGGLQKITTYRLPAVGEPLKSLQGGKS-VEF--IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV 358 (648)
Q Consensus 286 ----~~~~~~l~v~~~~~~g~~~~~l~~~~~-i~~--~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 358 (648)
.++...+++++++ ++.+..++.... +.. .+.........+++++..++|... ...+..+|.+++.+++.+
T Consensus 312 ~~~~~~~~~~i~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~-~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTK--AKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD-FEGVPAIYIADVPESYKH 388 (396)
T ss_dssp ---CCCCCCEEEEEETT--TTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC-TTSSCEEEEEECCTTCC-
T ss_pred cccccCCCCcEEEEecc--cCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec-CCCCceEEEEEEcccccc
Confidence 1244678888887 333322221100 000 000000112345677887766554 345678999999888754
Q ss_pred E
Q 006375 359 L 359 (648)
Q Consensus 359 ~ 359 (648)
+
T Consensus 389 ~ 389 (396)
T 3c5m_A 389 L 389 (396)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=139.27 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=79.5
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHC--CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDR--GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 481 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 481 (648)
+..|.||++||..+... .|......|.++ ||.|+++|+||.|...... ...++|+.+.+..+.+..
T Consensus 34 ~~~~~vvllHG~~~~~~--~~~~~~~~L~~~~~g~~vi~~D~~G~G~s~~~~---------~~~~~~~~~~l~~~~~~~- 101 (302)
T 1pja_A 34 ASYKPVIVVHGLFDSSY--SFRHLLEYINETHPGTVVTVLDLFDGRESLRPL---------WEQVQGFREAVVPIMAKA- 101 (302)
T ss_dssp -CCCCEEEECCTTCCGG--GGHHHHHHHHHHSTTCCEEECCSSCSGGGGSCH---------HHHHHHHHHHHHHHHHHC-
T ss_pred CCCCeEEEECCCCCChh--HHHHHHHHHHhcCCCcEEEEeccCCCccchhhH---------HHHHHHHHHHHHHHhhcC-
Confidence 45678999999655433 467777888888 9999999999986532211 124677777777776654
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCC-ceeEEEecCCcc
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAVPFV 520 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~-~~~a~v~~~~~~ 520 (648)
.+++.++|+||||.++..++.++|+ .++++|+.++..
T Consensus 102 --~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~ 139 (302)
T 1pja_A 102 --PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQ 139 (302)
T ss_dssp --TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCT
T ss_pred --CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCc
Confidence 4789999999999999999999999 799999888754
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-13 Score=139.52 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=85.1
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCC
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 463 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 463 (648)
.+|.++.....-|+ +.+.|+||++||..+... .|...+..|+++||.|+++|+||.|.....- ....
T Consensus 10 ~~g~~l~y~~~G~~-----~~~~~~vv~~hG~~~~~~--~~~~~~~~l~~~g~~vi~~d~~g~g~s~~~~------~~~~ 76 (356)
T 2e3j_A 10 CRGTRIHAVADSPP-----DQQGPLVVLLHGFPESWY--SWRHQIPALAGAGYRVVAIDQRGYGRSSKYR------VQKA 76 (356)
T ss_dssp ETTEEEEEEEECCT-----TCCSCEEEEECCTTCCGG--GGTTTHHHHHHTTCEEEEECCTTSTTSCCCC------SGGG
T ss_pred cCCeEEEEEEecCC-----CCCCCEEEEECCCCCcHH--HHHHHHHHHHHcCCEEEEEcCCCCCCCCCCC------cccc
Confidence 46777776533221 124689999999765433 3556677888899999999999987653211 0011
Q ss_pred CcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 464 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 464 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
..++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 77 YRIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp GSHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred cCHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 2445555555544443 245789999999999999999999999999999877643
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=132.37 Aligned_cols=125 Identities=16% Similarity=0.033 Sum_probs=84.2
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
+..+++..+|.++..... +. .+.|.||++||+++...... ....|..+||.|+++|.||.|.....
T Consensus 12 ~~~~~~~~~g~~l~y~~~---G~----~~g~pvvllHG~~~~~~~~~---~~~~~~~~~~~vi~~D~~G~G~S~~~---- 77 (313)
T 1azw_A 12 QQGSLKVDDRHTLYFEQC---GN----PHGKPVVMLHGGPGGGCNDK---MRRFHDPAKYRIVLFDQRGSGRSTPH---- 77 (313)
T ss_dssp EEEEEECSSSCEEEEEEE---EC----TTSEEEEEECSTTTTCCCGG---GGGGSCTTTEEEEEECCTTSTTSBST----
T ss_pred ccceEEcCCCCEEEEEec---CC----CCCCeEEEECCCCCccccHH---HHHhcCcCcceEEEECCCCCcCCCCC----
Confidence 344566668877754321 11 12366899999766443211 12233357999999999998876321
Q ss_pred ccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 457 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
.......++++.+.+..+++.- .-+++.++|+||||.+++.++.++|++++++|+..+.
T Consensus 78 --~~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~ 136 (313)
T 1azw_A 78 --ADLVDNTTWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp --TCCTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --cccccccHHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccc
Confidence 0112245677777676666542 2368999999999999999999999999999988764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=148.29 Aligned_cols=266 Identities=14% Similarity=0.087 Sum_probs=155.2
Q ss_pred CceEEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCC----CeEEEEEEEECCCCCeee-ccccCccceeEEecCC-
Q 006375 64 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKG----DEIYTVYVIDIETGTPVG-KPLVGVTASVEWAGNE- 137 (648)
Q Consensus 64 ~~~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G----~e~~~l~v~dl~~g~~~~-~~~~~~~~~~~WspDg- 137 (648)
..+.+++...... ..+..++|||||++|||..+..+ +...+|+++|+++|+... ..+......++|||||
T Consensus 47 ~~~~~~~~~~~~~----~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~ 122 (719)
T 1z68_A 47 QSYTILSNRTMKS----VNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGS 122 (719)
T ss_dssp CEEEEECHHHHHT----TTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTT
T ss_pred cEEEEEccccccc----cceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCC
Confidence 4566776554421 12457899999999999987432 235789999999998721 1223334569999999
Q ss_pred eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCe-----------------EEEEEeCCCCcEEEEEEccc----
Q 006375 138 ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIY-----------------SLGLQASESKKFLFIASESK---- 196 (648)
Q Consensus 138 ~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~s~Dg~~l~~~~~~~---- 196 (648)
.|+|+.. ..|+++++.++. ...+........ ...+.|||||++|++.+.+.
T Consensus 123 ~la~~~~------~~i~~~~~~~g~--~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 123 KLAYVYQ------NNIYLKQRPGDP--PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP 194 (719)
T ss_dssp CEEEEET------TEEEEESSTTSC--CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC
T ss_pred EEEEEEC------CeEEEEeCCCCC--cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc
Confidence 9999852 369999998763 222221111110 12689999999999876532
Q ss_pred ---------------------------cccEEEEEECCCCCce---eEeee-c----ccc--eeeeEeecCCEEEEEecc
Q 006375 197 ---------------------------ITRFVFYLDVSKPEEL---RVLTP-R----VVG--VDTAASHRGNHFFITRRS 239 (648)
Q Consensus 197 ---------------------------~~~~l~~~dl~~~~~~---~~l~~-~----~~~--~~~~~s~dg~~l~~~~~~ 239 (648)
....|+++|+++++ . ..+.. . ... ....|||||+.++...++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~ 273 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA-YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR 273 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH-HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC-ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence 12389999998875 2 13321 1 111 234599997644443444
Q ss_pred CCCCCcEEEEEe----CCCCCcceeEec-----CCCCcc-----cceEEEeCCEEEE-EEecCCeeEEEEEEcCCCCCcc
Q 006375 240 DELFNSELLACP----VDNTSETTVLIP-----HRESVK-----LQDIQLFIDHLAV-YEREGGLQKITTYRLPAVGEPL 304 (648)
Q Consensus 240 ~~~~~~~l~~~~----~~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~l~~-~~~~~~~~~l~v~~~~~~g~~~ 304 (648)
.....+|+++| +++. ....++. +..... ...++++++.+++ ....++..+|++++++ ++..
T Consensus 274 -~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~--~~~~ 349 (719)
T 1z68_A 274 -VQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDT--VENA 349 (719)
T ss_dssp -STTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSC--STTC
T ss_pred -ccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECC--CCce
Confidence 34457899999 6652 2222331 111111 2234455566665 3556777788888876 4333
Q ss_pred cccCCCceeecCCCeeeeeCCCCcccccEEEEEEee--C-CCCCEEEEEECCCC
Q 006375 305 KSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSS--L-RTPPSVYDYDMDMG 355 (648)
Q Consensus 305 ~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss--~-~~P~~~~~~d~~~~ 355 (648)
..++. ..+.+...... +++.++|..+. . ..-..+|.++..++
T Consensus 350 ~~lt~--------~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 350 IQITS--------GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EECSC--------SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred Eeccc--------CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 33321 11222222222 66767666543 1 23356888887655
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=137.35 Aligned_cols=228 Identities=8% Similarity=-0.015 Sum_probs=134.1
Q ss_pred CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCC
Q 006375 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 462 (648)
Q Consensus 383 s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 462 (648)
..+|.++.... . ++.|+||++||..+... .|...+..|++ +|.|+++|+||.|.....- .....
T Consensus 15 ~~~g~~l~~~~-----~----g~~~~vv~lHG~~~~~~--~~~~~~~~L~~-~~~vi~~D~~G~G~S~~~~----~~~~~ 78 (302)
T 1mj5_A 15 EIKGRRMAYID-----E----GTGDPILFQHGNPTSSY--LWRNIMPHCAG-LGRLIACDLIGMGDSDKLD----PSGPE 78 (302)
T ss_dssp EETTEEEEEEE-----E----SCSSEEEEECCTTCCGG--GGTTTGGGGTT-SSEEEEECCTTSTTSCCCS----SCSTT
T ss_pred EECCEEEEEEE-----c----CCCCEEEEECCCCCchh--hhHHHHHHhcc-CCeEEEEcCCCCCCCCCCC----CCCcc
Confidence 34777665431 1 22589999999765443 34544555554 5899999999988653220 00111
Q ss_pred CCcHhHHHHHHHHHHHcCCCCC-CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCC----------CC
Q 006375 463 KNTFTDFIACAEYLIKNCYCTK-EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP----------TI 531 (648)
Q Consensus 463 ~~~~~D~~~~~~~l~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~----------~~ 531 (648)
...++++.+.+..+++. .+. +++.++|+|+||.+++.++.++|++++++|+.+|........... ..
T Consensus 79 ~~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (302)
T 1mj5_A 79 RYAYAEHRDYLDALWEA--LDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRS 156 (302)
T ss_dssp SSCHHHHHHHHHHHHHH--TTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHH--hCCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCchhhhhhhHHHHHHHHHHhc
Confidence 24667777777766654 234 789999999999999999999999999999988765311000000 00
Q ss_pred CCC------cccc-----cc-cCCCCCHHHHH------------------HHHcC--------------CccccCCCCCC
Q 006375 532 PLT------TAEW-----EE-WGDPWKEEFYF------------------YMKSY--------------SPVDNVKAQNY 567 (648)
Q Consensus 532 ~~~------~~~~-----~~-~g~~~~~~~~~------------------~~~~~--------------sp~~~~~~~~~ 567 (648)
+.. ...+ .. ......++... ++... .....+.++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 236 (302)
T 1mj5_A 157 QAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESPI 236 (302)
T ss_dssp TTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHHHHTTCCS
T ss_pred cchhhhhcChHHHHHHHHHhcCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccchhhHHHHHHHHhhhhccCC
Confidence 000 0000 00 00011111111 11111 01233456788
Q ss_pred CeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCC
Q 006375 568 PHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 568 P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
| +|+++|++|..+|+..++++.+.+. . +++++ ++||.......+.+.+ .+.+||.+..+..
T Consensus 237 P-~l~i~g~~D~~~~~~~~~~~~~~~~----~-~~~~~----~~gH~~~~e~p~~~~~--~i~~fl~~~~~~~ 297 (302)
T 1mj5_A 237 P-KLFINAEPGALTTGRMRDFCRTWPN----Q-TEITV----AGAHFIQEDSPDEIGA--AIAAFVRRLRPAH 297 (302)
T ss_dssp C-EEEEEEEECSSSSHHHHHHHTTCSS----E-EEEEE----EESSCGGGTCHHHHHH--HHHHHHHHHSCCC
T ss_pred C-eEEEEeCCCCCCChHHHHHHHHhcC----C-ceEEe----cCcCcccccCHHHHHH--HHHHHHHhhcccc
Confidence 8 9999999999999876666654432 2 34444 5799766555544443 4678998876543
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-13 Score=132.45 Aligned_cols=209 Identities=13% Similarity=0.054 Sum_probs=124.3
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCe
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 486 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 486 (648)
|.||++||..... ..|...+..|.++||.|+.+|.||.|...... ....+++++.+.+..+++.-. ..++
T Consensus 4 ~~vvllHG~~~~~--~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~l~-~~~~ 73 (257)
T 3c6x_A 4 AHFVLIHTICHGA--WIWHKLKPLLEALGHKVTALDLAASGVDPRQI-------EEIGSFDEYSEPLLTFLEALP-PGEK 73 (257)
T ss_dssp CEEEEECCTTCCG--GGGTTHHHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHTHHHHHHHHTSC-TTCC
T ss_pred CcEEEEcCCccCc--CCHHHHHHHHHhCCCEEEEeCCCCCCCCCCCc-------ccccCHHHHHHHHHHHHHhcc-ccCC
Confidence 6799999965433 34666777888889999999999998763211 112456777766666665421 1268
Q ss_pred EEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc-ccc-------cccc--CCCC-CCCc----------------ccc-
Q 006375 487 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV-DVL-------TTML--DPTI-PLTT----------------AEW- 538 (648)
Q Consensus 487 i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~-d~~-------~~~~--~~~~-~~~~----------------~~~- 538 (648)
+.++||||||.++..++.++|++++++|+.++.. ... .... .+.. .... ..+
T Consensus 74 ~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (257)
T 3c6x_A 74 VILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLL 153 (257)
T ss_dssp EEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHHH
T ss_pred eEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCCCccccccccHHHH
Confidence 9999999999999999999999999999876532 100 0000 0000 0000 000
Q ss_pred c-ccCCCCCHHHHHHHHc-CCcc----------ccC--CC-CCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeE
Q 006375 539 E-EWGDPWKEEFYFYMKS-YSPV----------DNV--KA-QNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 603 (648)
Q Consensus 539 ~-~~g~~~~~~~~~~~~~-~sp~----------~~~--~~-~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 603 (648)
. .+......+....... ..|. ..+ .. .++| +|+++|++|..+|+..++++.+.+. ..+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~G~~D~~~p~~~~~~~~~~~~----~~~~~ 228 (257)
T 3c6x_A 154 RENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIK-KIYVWTDQDEIFLPEFQLWQIENYK----PDKVY 228 (257)
T ss_dssp HHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTTGGGSC-EEEEECTTCSSSCHHHHHHHHHHSC----CSEEE
T ss_pred HHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhhcCccc-EEEEEeCCCcccCHHHHHHHHHHCC----CCeEE
Confidence 0 0000011111111100 0110 011 11 2677 9999999999999888887777654 23455
Q ss_pred EEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 604 LFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 604 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
+++ ++||....++++.+.+ .+.+|+..
T Consensus 229 ~i~---~~gH~~~~e~P~~~~~--~l~~f~~~ 255 (257)
T 3c6x_A 229 KVE---GGDHKLQLTKTKEIAE--ILQEVADT 255 (257)
T ss_dssp ECC---SCCSCHHHHSHHHHHH--HHHHHHHH
T ss_pred EeC---CCCCCcccCCHHHHHH--HHHHHHHh
Confidence 554 8999775555554444 34667653
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-13 Score=136.26 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=76.2
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||.+++.. .|...+..|++ +|.|+++|.||.|..... ....+++++.+.+..+++.- +-+
T Consensus 29 ~~pvvllHG~~~~~~--~w~~~~~~L~~-~~~via~Dl~G~G~S~~~--------~~~~~~~~~a~dl~~ll~~l--~~~ 95 (316)
T 3afi_E 29 APVVLFLHGNPTSSH--IWRNILPLVSP-VAHCIAPDLIGFGQSGKP--------DIAYRFFDHVRYLDAFIEQR--GVT 95 (316)
T ss_dssp SCEEEEECCTTCCGG--GGTTTHHHHTT-TSEEEEECCTTSTTSCCC--------SSCCCHHHHHHHHHHHHHHT--TCC
T ss_pred CCeEEEECCCCCchH--HHHHHHHHHhh-CCEEEEECCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHc--CCC
Confidence 358999999766543 35555666654 599999999999876421 12346777777776666552 237
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
++.++|+||||.+++.++.++|++++++|+..+
T Consensus 96 ~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 128 (316)
T 3afi_E 96 SAYLVAQDWGTALAFHLAARRPDFVRGLAFMEF 128 (316)
T ss_dssp SEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEE
T ss_pred CEEEEEeCccHHHHHHHHHHCHHhhhheeeecc
Confidence 899999999999999999999999999998765
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-12 Score=143.30 Aligned_cols=236 Identities=8% Similarity=-0.030 Sum_probs=147.4
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc--CccceeEEecCCeEEEEEeC-CCCCCceEEEEEC-
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV--GVTASVEWAGNEALVYITMD-EILRPDKAWLHKL- 158 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~--~~~~~~~WspDg~l~y~~~~-~~~~~~~l~~~~l- 158 (648)
+..+.+||||++|||+.+.+| ..+||. +++|+.+..+.. .....++|||| +++|+... ......+||.+++
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g--~~~lw~--~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEG--SVNAYL--YDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETT--EEEEEE--EETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred hheeecCCCCCeEEEEEccCC--ceeEEE--EcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 567889999999999988666 455665 467776654322 23456999999 89998874 3345567898888
Q ss_pred -CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEe
Q 006375 159 -EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITR 237 (648)
Q Consensus 159 -~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~ 237 (648)
.+. . ..+. .. .... ...|||||+.+++.+.+.+... ++|+++++ .+.++.... ....|||||++|++.+
T Consensus 99 ~~g~--~-~~l~-~~-~~~~-~~~~s~dg~~~~~~s~~~~~~~--l~d~~~g~-~~~l~~~~~-~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 99 RPGE--E-QRLE-AV-KPMR-ILSGVDTGEAVVFTGATEDRVA--LYALDGGG-LRELARLPG-FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp STTC--C-EECT-TS-CSBE-EEEEEECSSCEEEEEECSSCEE--EEEEETTE-EEEEEEESS-CEEEEEEETTEEEEEE
T ss_pred CCCc--c-cccc-CC-CCce-eeeeCCCCCeEEEEecCCCCce--EEEccCCc-EEEeecCCC-ceEEECCCCCEEEEEE
Confidence 443 2 2221 11 1222 4589999998888766554444 55888876 666665433 5567999999999888
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEE--eCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeec
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL--FIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEF 315 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~ 315 (648)
+.. .....|+++|+++. ..+.+..+... +..+.| +++.++ ....++..+|++++++ ++... .+
T Consensus 169 ~~~-~~~~~i~~~d~~~g-~~~~l~~~~~~--~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~--~~~~~--------~~ 233 (582)
T 3o4h_A 169 FFG-GGRVSLFTSNLSSG-GLRVFDSGEGS--FSSASISPGMKVTA-GLETAREARLVTVDPR--DGSVE--------DL 233 (582)
T ss_dssp EEE-TTEEEEEEEETTTC-CCEEECCSSCE--EEEEEECTTSCEEE-EEECSSCEEEEEECTT--TCCEE--------EC
T ss_pred EcC-CCCeEEEEEcCCCC-CceEeecCCCc--cccceECCCCCEEE-EccCCCeeEEEEEcCC--CCcEE--------Ec
Confidence 763 23357999998863 34435444332 344455 445666 5555666789999887 33322 11
Q ss_pred CCCeeeeeCCC--------CcccccEEEEEEeeCCCCCEEEEEEC
Q 006375 316 IDPVYSIDPSE--------SVFSSRILRFHYSSLRTPPSVYDYDM 352 (648)
Q Consensus 316 ~~~~~~v~~~~--------~~~~~~~l~~~~ss~~~P~~~~~~d~ 352 (648)
......+..+. +++|+ .++++.+.. ..+..+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~---g~~~l~~~ 274 (582)
T 3o4h_A 234 ELPSKDFSSYRPTAITWLGYLPDG-RLAVVARRE---GRSAVFID 274 (582)
T ss_dssp CCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEET---TEEEEEET
T ss_pred cCCCcChhhhhhccccceeEcCCC-cEEEEEEcC---CcEEEEEE
Confidence 11111222233 67788 566665543 34556666
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-13 Score=123.25 Aligned_cols=169 Identities=13% Similarity=0.025 Sum_probs=113.5
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCC---EEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGF---IFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 482 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~---~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 482 (648)
.|+||++||..+.. ..|......|.++|| .|+.+|+||.|.... ..++++.+.++.+++. .
T Consensus 3 ~~~vv~~HG~~~~~--~~~~~~~~~l~~~G~~~~~v~~~d~~g~g~s~~------------~~~~~~~~~~~~~~~~--~ 66 (181)
T 1isp_A 3 HNPVVMVHGIGGAS--FNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNY------------NNGPVLSRFVQKVLDE--T 66 (181)
T ss_dssp CCCEEEECCTTCCG--GGGHHHHHHHHHTTCCGGGEEECCCSCTTCCHH------------HHHHHHHHHHHHHHHH--H
T ss_pred CCeEEEECCcCCCH--hHHHHHHHHHHHcCCCCccEEEEecCCCCCchh------------hhHHHHHHHHHHHHHH--c
Confidence 47899999966543 346666778889998 599999998775432 1335666666665554 2
Q ss_pred CCCeEEEEeeChhHHHHHHHHhhC--CCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccc
Q 006375 483 TKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVD 560 (648)
Q Consensus 483 d~~~i~i~G~S~GG~l~~~~~~~~--p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~ 560 (648)
+.+++.++|+||||.++..++.++ |+.++++|+.+|........ .+ +. ..+
T Consensus 67 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~~---~~------------~~----------~~~-- 119 (181)
T 1isp_A 67 GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGK---AL------------PG----------TDP-- 119 (181)
T ss_dssp CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSB---CC------------CC----------SCT--
T ss_pred CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCcccccccc---cC------------CC----------CCC--
Confidence 447899999999999999999987 88999999999876532110 00 00 011
Q ss_pred cCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHh
Q 006375 561 NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 561 ~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 636 (648)
..+.| +|+++|++|..||+..++ ....+.++++ ++||.......+ ....+.+||.+.
T Consensus 120 ---~~~~p-~l~i~G~~D~~v~~~~~~---------~~~~~~~~~~---~~gH~~~~~~~~---~~~~i~~fl~~~ 176 (181)
T 1isp_A 120 ---NQKIL-YTSIYSSADMIVMNYLSR---------LDGARNVQIH---GVGHIGLLYSSQ---VNSLIKEGLNGG 176 (181)
T ss_dssp ---TCCCE-EEEEEETTCSSSCHHHHC---------CBTSEEEEES---SCCTGGGGGCHH---HHHHHHHHHTTT
T ss_pred ---ccCCc-EEEEecCCCccccccccc---------CCCCcceeec---cCchHhhccCHH---HHHHHHHHHhcc
Confidence 12355 999999999999976331 1234455554 889976544432 223456777653
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-13 Score=132.04 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=74.1
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||..+... .|...+..|.++||.|+++|+||.|..... ...+++++.+.+..+++.-..+..
T Consensus 16 ~~~vvllHG~~~~~~--~w~~~~~~L~~~~~~vi~~Dl~GhG~S~~~---------~~~~~~~~a~~l~~~l~~l~~~~~ 84 (264)
T 1r3d_A 16 TPLVVLVHGLLGSGA--DWQPVLSHLARTQCAALTLDLPGHGTNPER---------HCDNFAEAVEMIEQTVQAHVTSEV 84 (264)
T ss_dssp BCEEEEECCTTCCGG--GGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCTTS
T ss_pred CCcEEEEcCCCCCHH--HHHHHHHHhcccCceEEEecCCCCCCCCCC---------CccCHHHHHHHHHHHHHHhCcCCC
Confidence 488999999665443 466666677658999999999999876431 012456776666666654333323
Q ss_pred eEEEEeeChhHHHHHH---HHhhCCCceeEEEecCCc
Q 006375 486 KLCIEGRSAGGLLIGA---VLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~---~~~~~p~~~~a~v~~~~~ 519 (648)
++.++||||||.+++. ++.++|++++++|+..+.
T Consensus 85 p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~ 121 (264)
T 1r3d_A 85 PVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGH 121 (264)
T ss_dssp EEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCC
T ss_pred ceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCC
Confidence 4999999999999999 888899999999987764
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=135.31 Aligned_cols=209 Identities=13% Similarity=0.078 Sum_probs=120.9
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
++.|+||++||..+. ...|...+..|. .+|.|+++|+||.|.... ......++++.+.+..+++.- +
T Consensus 18 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~--------~~~~~~~~~~~~~~~~~l~~~--~ 84 (267)
T 3fla_A 18 DARARLVCLPHAGGS--ASFFFPLAKALA-PAVEVLAVQYPGRQDRRH--------EPPVDSIGGLTNRLLEVLRPF--G 84 (267)
T ss_dssp TCSEEEEEECCTTCC--GGGGHHHHHHHT-TTEEEEEECCTTSGGGTT--------SCCCCSHHHHHHHHHHHTGGG--T
T ss_pred CCCceEEEeCCCCCC--chhHHHHHHHhc-cCcEEEEecCCCCCCCCC--------CCCCcCHHHHHHHHHHHHHhc--C
Confidence 457999999997553 234555555655 459999999998775321 112235666666666555542 4
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCc----eeEEEecCCcccccccccCCCCCCCcccc----cccC-CC----CCHH--
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDL----FKAAVAAVPFVDVLTTMLDPTIPLTTAEW----EEWG-DP----WKEE-- 548 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~----~~a~v~~~~~~d~~~~~~~~~~~~~~~~~----~~~g-~~----~~~~-- 548 (648)
.+++.++|+|+||.+++.++.++|+. ++++|+..+......... .........+ ..++ .+ .+++
T Consensus 85 ~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (267)
T 3fla_A 85 DRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDD-DVRGASDERLVAELRKLGGSDAAMLADPELL 163 (267)
T ss_dssp TSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCS-CTTCCCHHHHHHHHHHTCHHHHHHHHSHHHH
T ss_pred CCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccch-hhcccchHHHHHHHHHhcCcchhhccCHHHH
Confidence 57899999999999999999999986 888888776533221100 0000000000 0111 00 0111
Q ss_pred ---------HHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCch
Q 006375 549 ---------FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGR 619 (648)
Q Consensus 549 ---------~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~ 619 (648)
.+..+..+.+... .++++| +|+++|++|..+|+....++.+.+.. +.++++++ + ||+.....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~---g-gH~~~~~~ 234 (267)
T 3fla_A 164 AMVLPAIRSDYRAVETYRHEPG-RRVDCP-VTVFTGDHDPRVSVGEARAWEEHTTG---PADLRVLP---G-GHFFLVDQ 234 (267)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT-CCBSSC-EEEEEETTCTTCCHHHHHGGGGGBSS---CEEEEEES---S-STTHHHHT
T ss_pred HHHHHHHHHHHHhhhccccccc-CcCCCC-EEEEecCCCCCCCHHHHHHHHHhcCC---CceEEEec---C-CceeeccC
Confidence 1122223333222 466888 99999999999998777666554432 24445553 6 99754333
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 006375 620 FERLREAAFTYTFLMRAL 637 (648)
Q Consensus 620 ~~~~~~~~~~~~fl~~~l 637 (648)
.+.+.+ .+.+||.+..
T Consensus 235 ~~~~~~--~i~~fl~~~~ 250 (267)
T 3fla_A 235 AAPMIA--TMTEKLAGPA 250 (267)
T ss_dssp HHHHHH--HHHHHTC---
T ss_pred HHHHHH--HHHHHhcccc
Confidence 332222 4567776554
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-12 Score=127.34 Aligned_cols=219 Identities=12% Similarity=0.050 Sum_probs=134.5
Q ss_pred eEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEcc--------CCCCCCChhhhhccc
Q 006375 387 TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQI--------RGGGELGRQWYENGK 458 (648)
Q Consensus 387 ~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~--------rG~g~~g~~~~~~~~ 458 (648)
..+++.+++|++. .++.|+||.+||+.. . +.+||+++.+|. ||+.++|. |++.-.
T Consensus 90 ~~~~~~i~lP~~~---~~p~Pvii~i~~~~~-------~------~~~G~a~~~~~~~~v~~~~~~gs~g~g~-f~~ly~ 152 (375)
T 3pic_A 90 ISFTVTITYPSSG---TAPYPAIIGYGGGSL-------P------APAGVAMINFNNDNIAAQVNTGSRGQGK-FYDLYG 152 (375)
T ss_dssp EEEEEEEECCSSS---CSSEEEEEEETTCSS-------C------CCTTCEEEEECHHHHSCCSSGGGTTCSH-HHHHHC
T ss_pred eEEEEEEECCCCC---CCCccEEEEECCCcc-------c------cCCCeEEEEecccccccccCCCCcccee-cccccC
Confidence 3577888888754 367899999988421 1 458999999997 66666776 543211
Q ss_pred ccCCCCcH----hHHHHHHHHHHHcC--CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc------
Q 006375 459 FLKKKNTF----TDFIACAEYLIKNC--YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM------ 526 (648)
Q Consensus 459 ~~~~~~~~----~D~~~~~~~l~~~~--~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~------ 526 (648)
.......+ =|+..+++||..+. .+|++||+++|+|+||..++.+++..+ +|+++|+.++..+-...+
T Consensus 153 ~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D~-Ri~~~v~~~~g~~G~~~~R~~~~~ 231 (375)
T 3pic_A 153 SSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFEK-RIVLTLPQESGAGGSACWRISDYL 231 (375)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHCT-TEEEEEEESCCTTTTSCHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcCC-ceEEEEeccCCCCchhhhhhhhhh
Confidence 11111111 37889999999988 899999999999999999999999875 799999998765432211
Q ss_pred --cCCCC----------CCCcccccccCCCCCHHHHHHHHcCCccc--cCCCCCCC-eEEEeecCCCCccCCchHHHHHH
Q 006375 527 --LDPTI----------PLTTAEWEEWGDPWKEEFYFYMKSYSPVD--NVKAQNYP-HILVTAGLNDPRVMYSEPAKFVA 591 (648)
Q Consensus 527 --~~~~~----------~~~~~~~~~~g~~~~~~~~~~~~~~sp~~--~~~~~~~P-~~li~~g~~D~~v~~~~~~~~~~ 591 (648)
..+.+ .+....+..|.+. . .--|++ .+-..-.| |+||+.| +|..+++......+.
T Consensus 232 ~~~Ge~v~~~~~~~~e~~Wf~~~~~~y~~~--~-------~~lP~D~h~L~ALiAPRPllv~~g-~D~w~~~~g~~~~~~ 301 (375)
T 3pic_A 232 KSQGANIQTASEIIGEDPWFSTTFNSYVNQ--V-------PVLPFDHHSLAALIAPRGLFVIDN-NIDWLGPQSCFGCMT 301 (375)
T ss_dssp HHTTCCCCCHHHHTTTCSCSCGGGGGTTTC--G-------GGSSCCHHHHHHTSTTSEEEEECC-CCGGGCHHHHHHHHH
T ss_pred cccCccccccccccCcccccccchhhhccc--c-------cccCcCHHHHHHHhCCceEEEecC-CCcccCcHHHHHHHH
Confidence 01111 0111111122110 0 001111 11111223 6999999 999888876655554
Q ss_pred HH----HhcCCCCCeEEEEecCCCCccC-CCchHHHHHHHHHHHHHHHHhcCCC
Q 006375 592 KL----REMKTDDNILLFKCELGAGHFS-KSGRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 592 ~l----~~~~~~~~~~~~~~~~~~gH~~-~~~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
++ +..|.+.++-. ....+++|.. ..... ...++||.++|...
T Consensus 302 ~a~~VY~~lG~~d~~~~-~~~ggH~Hc~fp~~~~------~~~~~F~~k~L~~~ 348 (375)
T 3pic_A 302 AAHMAWQALGVSDHMGY-SQIGAHAHCAFPSNQQ------SQLTAFVQKFLLGQ 348 (375)
T ss_dssp HHHHHHHHTTCGGGEEE-ECCSCCSTTCCCGGGH------HHHHHHHHHHTSCC
T ss_pred HHHHHHHHcCCccceEE-EeeCCCccccCCHHHH------HHHHHHHHHHhCCC
Confidence 44 44577766554 3344567742 22211 24578999999653
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.7e-13 Score=131.70 Aligned_cols=124 Identities=21% Similarity=0.199 Sum_probs=82.3
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
+...+.+.+|.++.....-++ ++.|.||++||..+.. ..|...+..|++ ||.|+++|.||.|.....-
T Consensus 6 ~~~~~~~~~g~~l~~~~~g~~------~~~~~vvllHG~~~~~--~~~~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~--- 73 (285)
T 3bwx_A 6 EDRYWTSSDGLRLHFRAYEGD------ISRPPVLCLPGLTRNA--RDFEDLATRLAG-DWRVLCPEMRGRGDSDYAK--- 73 (285)
T ss_dssp EEEEEECTTSCEEEEEEECBC------TTSCCEEEECCTTCCG--GGGHHHHHHHBB-TBCEEEECCTTBTTSCCCS---
T ss_pred ccCeeecCCCceEEEEEcCCC------CCCCcEEEECCCCcch--hhHHHHHHHhhc-CCEEEeecCCCCCCCCCCC---
Confidence 455667788888876533211 1246799999966543 346665666654 9999999999988654210
Q ss_pred ccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecC
Q 006375 457 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV 517 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~ 517 (648)
.....+++++.+.+..+++.- ..+++.++|+||||.++..++.++|++++++|+..
T Consensus 74 ---~~~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~ 129 (285)
T 3bwx_A 74 ---DPMTYQPMQYLQDLEALLAQE--GIERFVAIGTSLGGLLTMLLAAANPARIAAAVLND 129 (285)
T ss_dssp ---SGGGCSHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEES
T ss_pred ---CccccCHHHHHHHHHHHHHhc--CCCceEEEEeCHHHHHHHHHHHhCchheeEEEEec
Confidence 001123444444333333321 23689999999999999999999999999999854
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=131.11 Aligned_cols=201 Identities=15% Similarity=0.100 Sum_probs=117.0
Q ss_pred Cc-EEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 406 DP-LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 406 ~P-~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
.| .||++||..+... .|......|. .+|.|+++|.||.|..... ...+++++ ++.+.+. ++
T Consensus 12 g~~~vvllHG~~~~~~--~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~---------~~~~~~~~---~~~l~~~--l~- 73 (258)
T 1m33_A 12 GNVHLVLLHGWGLNAE--VWRCIDEELS-SHFTLHLVDLPGFGRSRGF---------GALSLADM---AEAVLQQ--AP- 73 (258)
T ss_dssp CSSEEEEECCTTCCGG--GGGGTHHHHH-TTSEEEEECCTTSTTCCSC---------CCCCHHHH---HHHHHTT--SC-
T ss_pred CCCeEEEECCCCCChH--HHHHHHHHhh-cCcEEEEeeCCCCCCCCCC---------CCcCHHHH---HHHHHHH--hC-
Confidence 35 8999999654433 3565566665 6899999999998865432 12344554 3444443 34
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCC-Cc---------------ccc---cccCCCC
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPL-TT---------------AEW---EEWGDPW 545 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~-~~---------------~~~---~~~g~~~ 545 (648)
+++.++|+||||.++..++.++|++++++|+..+.........-..... .. ..+ ..++.+.
T Consensus 74 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 1m33_A 74 DKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTET 153 (258)
T ss_dssp SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTT
T ss_pred CCeEEEEECHHHHHHHHHHHHhhHhhceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcc
Confidence 7899999999999999999999999999998765421110000000000 00 000 0011111
Q ss_pred CHHHH----------------------HHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeE
Q 006375 546 KEEFY----------------------FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 603 (648)
Q Consensus 546 ~~~~~----------------------~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 603 (648)
..... ..+........+.++++| +|+++|++|..+|+..+.++.+.+. ..+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~ 228 (258)
T 1m33_A 154 ARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMP-FLRLYGYLDGLVPRKVVPMLDKLWP----HSESY 228 (258)
T ss_dssp HHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSC-EEEEEETTCSSSCGGGCC-CTTTCT----TCEEE
T ss_pred chhhHHHHHHHHHhccCCcHHHHHHHHHHHHhCCHHHHHhhCCCC-EEEEeecCCCCCCHHHHHHHHHhCc----cceEE
Confidence 11100 111122223345667898 9999999999999876665544332 34555
Q ss_pred EEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 604 LFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 604 ~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
+++ ++||.......+.+.+ .+.+||.
T Consensus 229 ~i~---~~gH~~~~e~p~~~~~--~i~~fl~ 254 (258)
T 1m33_A 229 IFA---KAAHAPFISHPAEFCH--LLVALKQ 254 (258)
T ss_dssp EET---TCCSCHHHHSHHHHHH--HHHHHHT
T ss_pred EeC---CCCCCccccCHHHHHH--HHHHHHH
Confidence 554 8999764444443332 4567774
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-14 Score=145.95 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=74.9
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
+.|+||++||..+... .|...+..|+ +||.|+++|+||.|.....-.. .......++++.+.+..+++. .+.
T Consensus 24 ~~p~vv~lHG~~~~~~--~~~~~~~~l~-~g~~v~~~D~~G~G~s~~~~~~---~~~~~~~~~~~~~~l~~~l~~--l~~ 95 (304)
T 3b12_A 24 SGPALLLLHGFPQNLH--MWARVAPLLA-NEYTVVCADLRGYGGSSKPVGA---PDHANYSFRAMASDQRELMRT--LGF 95 (304)
Confidence 4578999999765443 3555556666 7999999999998865432100 001122334444444443332 234
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccc
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 521 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d 521 (648)
+++.++|+|+||.+++.++.++|++++++|+.+|...
T Consensus 96 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 132 (304)
T 3b12_A 96 ERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPT 132 (304)
Confidence 6899999999999999999999999999999987654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-11 Score=139.45 Aligned_cols=211 Identities=13% Similarity=0.122 Sum_probs=140.0
Q ss_pred EeeEEeCCCCCEEEEEEeC-C---------------------------CCeEEEEEEEECCCCCeeecccc----Cccce
Q 006375 83 VGCFQVSPDNKLVAYAEDT-K---------------------------GDEIYTVYVIDIETGTPVGKPLV----GVTAS 130 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~-~---------------------------G~e~~~l~v~dl~~g~~~~~~~~----~~~~~ 130 (648)
+..+.|||||++|||.... . ++...+|+++|+++++....... .....
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 3688999999999999621 1 12357899999999886543321 22356
Q ss_pred eEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeE---EEEEeCC--CCcEEEEEEccccccEEEEE
Q 006375 131 VEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYS---LGLQASE--SKKFLFIASESKITRFVFYL 204 (648)
Q Consensus 131 ~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~s~--Dg~~l~~~~~~~~~~~l~~~ 204 (648)
++||||| .|++...+.......|+.+++.++. ....+..+....+. ..+.||| ||++|+ .++..+...||.+
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~-~~~~~g~~~l~~~ 340 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGR-FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW-QSRRDGWNHLYLY 340 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-EEEEEEEEECSSCCCCCSCCEECTTCSSEEEE-EECTTSSCEEEEE
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-eeeEEEEccCCCeECccCCceeecCCCCEEEE-EEccCCccEEEEE
Confidence 9999999 8888777655555689999998862 22334433333221 3468999 999654 4555566899999
Q ss_pred ECCCCCceeEeeeccccee--eeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEE
Q 006375 205 DVSKPEELRVLTPRVVGVD--TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAV 282 (648)
Q Consensus 205 dl~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (648)
+++++. .+.++.....+. ..|+|||+.|++.+..++....+|+.+++++. ..+ .+.+........++++++.+++
T Consensus 341 ~~~~~~-~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~-~~~-~l~~~~~~~~~~~spdg~~l~~ 417 (706)
T 2z3z_A 341 DTTGRL-IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG-KTK-DLTPESGMHRTQLSPDGSAIID 417 (706)
T ss_dssp ETTSCE-EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC-CCE-ESCCSSSEEEEEECTTSSEEEE
T ss_pred ECCCCE-EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC-Cce-eccCCCceEEEEECCCCCEEEE
Confidence 977665 666765543333 46999999999998864434579999998763 333 3333333222334444556766
Q ss_pred EEecC-CeeEEEEEEcC
Q 006375 283 YEREG-GLQKITTYRLP 298 (648)
Q Consensus 283 ~~~~~-~~~~l~v~~~~ 298 (648)
..... ....+++++++
T Consensus 418 ~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 418 IFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EEECSSCSCEEEEEESS
T ss_pred EecCCCCCcEEEEEECC
Confidence 65543 34579999887
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-11 Score=138.53 Aligned_cols=254 Identities=15% Similarity=0.080 Sum_probs=159.6
Q ss_pred EeCCCCCEEEEEEeCCCCeEEEEEEEECC---CCCeeec------cccC--ccceeEEecCC-eEEEEEeCCCCCCceEE
Q 006375 87 QVSPDNKLVAYAEDTKGDEIYTVYVIDIE---TGTPVGK------PLVG--VTASVEWAGNE-ALVYITMDEILRPDKAW 154 (648)
Q Consensus 87 ~~SPDG~~la~~~~~~G~e~~~l~v~dl~---~g~~~~~------~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~ 154 (648)
.++|||++++|.....|.+...||+++.. +++.... ...+ ....++||||| .|+|...+...+..+|+
T Consensus 113 ~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 34699999999998888667899999987 6654321 1111 34569999999 99999876555567899
Q ss_pred EEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcccc-----------ccEEEEEECCCCC-ceeEeeeccc--
Q 006375 155 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI-----------TRFVFYLDVSKPE-ELRVLTPRVV-- 220 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~-----------~~~l~~~dl~~~~-~~~~l~~~~~-- 220 (648)
.+++.++.. .... ... ....++.|||| +.|++.+.... ..+||++++.++. .-+.+.....
T Consensus 193 v~dl~tg~~--~~~~-~~~-~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~ 267 (741)
T 1yr2_A 193 FVGVADGKP--LADE-LKW-VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP 267 (741)
T ss_dssp EEETTTCCE--EEEE-EEE-EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred EEECCCCCC--CCcc-CCC-ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC
Confidence 999998732 2211 111 11136789999 99999875543 4579999998765 2234443322
Q ss_pred --ceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCC-c-ceeEecCCCCcccceEEEeCCEEEEEEecCC-eeEEEEE
Q 006375 221 --GVDTAASHRGNHFFITRRSDELFNSELLACPVDNTS-E-TTVLIPHRESVKLQDIQLFIDHLAVYEREGG-LQKITTY 295 (648)
Q Consensus 221 --~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~l~v~ 295 (648)
.....|||||++|++.+......+.+|+++|++++. . .+.+.+.... ....+..+++.+++..+.++ ..+|+++
T Consensus 268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~~~~~~dg~~l~~~s~~~~~~~~l~~~ 346 (741)
T 1yr2_A 268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA-QWDFVDGVGDQLWFVSGDGAPLKKIVRV 346 (741)
T ss_dssp TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEE
T ss_pred eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc-eEEEEeccCCEEEEEECCCCCCCEEEEE
Confidence 134569999999999987632245689999987641 2 3335544332 23335578888888877654 5678888
Q ss_pred EcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 296 RLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 296 ~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+++....... .+ +|.....+.++. +.++.+++....- .-.+++.+++.++.
T Consensus 347 d~~~~~~~~~------~l-~~~~~~~l~~~~--~~~~~lv~~~~~d-g~~~l~~~~~~g~~ 397 (741)
T 1yr2_A 347 DLSGSTPRFD------TV-VPESKDNLESVG--IAGNRLFASYIHD-AKSQVLAFDLDGKP 397 (741)
T ss_dssp ECSSSSCEEE------EE-ECCCSSEEEEEE--EEBTEEEEEEEET-TEEEEEEEETTSCE
T ss_pred eCCCCccccE------EE-ecCCCCeEEEEE--EECCEEEEEEEEC-CEEEEEEEeCCCCc
Confidence 8773211111 11 222221232222 2355566665443 34578888875443
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=128.37 Aligned_cols=102 Identities=13% Similarity=0.022 Sum_probs=77.9
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|+||++||..+... .|...+..|. ++|.|+++|+||.|..... .....++++.+.+..+++.- +.+
T Consensus 21 ~~~vv~lHG~~~~~~--~~~~~~~~L~-~~~~v~~~D~~G~G~S~~~--------~~~~~~~~~~~~~~~~l~~l--~~~ 87 (264)
T 3ibt_A 21 APTLFLLSGWCQDHR--LFKNLAPLLA-RDFHVICPDWRGHDAKQTD--------SGDFDSQTLAQDLLAFIDAK--GIR 87 (264)
T ss_dssp SCEEEEECCTTCCGG--GGTTHHHHHT-TTSEEEEECCTTCSTTCCC--------CSCCCHHHHHHHHHHHHHHT--TCC
T ss_pred CCeEEEEcCCCCcHh--HHHHHHHHHH-hcCcEEEEccccCCCCCCC--------ccccCHHHHHHHHHHHHHhc--CCC
Confidence 589999999765543 3566566664 5699999999998865432 22345667776666666542 346
Q ss_pred eEEEEeeChhHHHHHHHHhhC-CCceeEEEecCCcc
Q 006375 486 KLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVPFV 520 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~-p~~~~a~v~~~~~~ 520 (648)
++.++|+|+||.+++.++.++ |++++++|+..|..
T Consensus 88 ~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~ 123 (264)
T 3ibt_A 88 DFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLL 123 (264)
T ss_dssp SEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCS
T ss_pred ceEEEecchhHHHHHHHHHhhChhhhheEEEecCCC
Confidence 899999999999999999999 99999999998765
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-14 Score=149.32 Aligned_cols=217 Identities=16% Similarity=0.104 Sum_probs=131.3
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCC-CCCchhHHHHHHCC-CEEEEEccCC-CCCCChhhhhcccccCCCCc
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLDRG-FIFAIAQIRG-GGELGRQWYENGKFLKKKNT 465 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G-~~v~~~~~rG-~g~~g~~~~~~~~~~~~~~~ 465 (648)
+.+.++.|+.. .++.|+||++|||...... ..+......|+++| ++|+.+|||. ..+++..-... ........
T Consensus 83 L~l~v~~P~~~---~~~~PviV~iHGGg~~~g~~~~~~~~~~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~-~~~~~n~g 158 (489)
T 1qe3_A 83 LYVNVFAPDTP---SQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFD-EAYSDNLG 158 (489)
T ss_dssp CEEEEEEECSS---CCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTC-TTSCSCHH
T ss_pred CEEEEEeCCCC---CCCCCEEEEECCCccccCCCCCcccCHHHHHhcCCEEEEecCccCcccccCcccccc-ccCCCCcc
Confidence 45555667643 2358999999998633222 12222356777775 9999999994 32333210000 01122245
Q ss_pred HhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhC--CCceeEEEecCCcccccccccCCCCCCCcccc-c
Q 006375 466 FTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW-E 539 (648)
Q Consensus 466 ~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~-~ 539 (648)
+.|+.++++|+.++ ...||+||+|+|+|+||++++.++... +.+|+++|+.+|..++..... .... ...+ .
T Consensus 159 l~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~--~~~~-~~~~~~ 235 (489)
T 1qe3_A 159 LLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQ--AAST-AAAFLQ 235 (489)
T ss_dssp HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHH--HHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHH--HHHH-HHHHHH
Confidence 89999999999876 236999999999999999998888753 468999999999774322110 0000 0001 1
Q ss_pred ccCCCC-CHH------HHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCC
Q 006375 540 EWGDPW-KEE------FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 612 (648)
Q Consensus 540 ~~g~~~-~~~------~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g 612 (648)
..|.+. ..+ ..+.+...+++.+......| .+++++..|..|.+.++.+++++.+..+++. ++-...++|
T Consensus 236 ~~g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~~~~~-~~~~~p~~D~~~~~~~~~~~~~~~~~~~vp~---~~g~~~~Eg 311 (489)
T 1qe3_A 236 VLGINESQLDRLHTVAAEDLLKAADQLRIAEKENIF-QLFFQPALDPKTLPEEPEKSIAEGAASGIPL---LIGTTRDEG 311 (489)
T ss_dssp HHTCCTTCGGGGGTSCHHHHHHHHHHHHTSTTCCTT-SCSSCCBCBTTTBCSCHHHHHHTTTTTTCCE---EEEEETTGG
T ss_pred HcCCCHHHHHHHHcCCHHHHHHHHHHhhhccccccC-CccceEeECCeecCcCHHHHHhcCCCCCCCE---EEeeecchh
Confidence 234331 111 01112222232211122334 7889999999999999999998887776663 343444778
Q ss_pred ccCC
Q 006375 613 HFSK 616 (648)
Q Consensus 613 H~~~ 616 (648)
|...
T Consensus 312 ~~~~ 315 (489)
T 1qe3_A 312 YLFF 315 (489)
T ss_dssp GGTC
T ss_pred Hhhc
Confidence 8553
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=130.04 Aligned_cols=247 Identities=15% Similarity=0.155 Sum_probs=140.3
Q ss_pred eEEEEEeCC-CCeEEeEEEEEeeCccc----cCCCCcEEEEecCCCCCCCCCCCchhHH-HHHHCCCEEEEEccC--CCC
Q 006375 376 TERKWASAS-DGTQIPICIVYRKNLVK----LDGSDPLLLYGYGSYEICNDPAFNSSRL-SLLDRGFIFAIAQIR--GGG 447 (648)
Q Consensus 376 ~~~~~~~s~-~g~~i~~~l~~~~~~~~----~~~~~P~vl~~hGg~~~~~~~~~~~~~~-~l~~~G~~v~~~~~r--G~g 447 (648)
..++++.|. -|.++.+.++.|++... .++++|+|.++||..+....+.....++ ...+.|.++++++.. +-.
T Consensus 14 ~~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~~v~p~~~p~~~~ 93 (299)
T 4fol_A 14 LIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRGDE 93 (299)
T ss_dssp EEEEEEECTTTSSEEEEEEEECGGGGCC------CBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEEECSSCCSTT
T ss_pred EEEEEEECcccCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCChHHHHHhchHhHHHHHcCchhhccCCCcceee
Confidence 455666554 57789999999987511 3467999999999755432221112233 344569999998752 111
Q ss_pred ---C--------CChhhhhcccc-c-CCCCcH-----hHHHHHHHHHHH----cCCCCCCeEEEEeeChhHHHHHHHHhh
Q 006375 448 ---E--------LGRQWYENGKF-L-KKKNTF-----TDFIACAEYLIK----NCYCTKEKLCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 448 ---~--------~g~~~~~~~~~-~-~~~~~~-----~D~~~~~~~l~~----~~~~d~~~i~i~G~S~GG~l~~~~~~~ 505 (648)
+ .+..|+..... . .+...+ +|+...++.-.. +...++++.+|.|+||||+-|+.++.+
T Consensus 94 ~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl~~al~ 173 (299)
T 4fol_A 94 VANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGYLK 173 (299)
T ss_dssp SCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHHHHHHH
T ss_pred cCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHHHHHHh
Confidence 0 01111110000 0 011122 333333332111 123456789999999999999998887
Q ss_pred C--CCceeEEEecCCcccccccccCCCCCCCccccc-ccCCCCCHHHHHHHHcCCccccC---CCCCCCeEEEeecCCCC
Q 006375 506 R--PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE-EWGDPWKEEFYFYMKSYSPVDNV---KAQNYPHILVTAGLNDP 579 (648)
Q Consensus 506 ~--p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~sp~~~~---~~~~~P~~li~~g~~D~ 579 (648)
+ |+.|+++.+.+|.++..... .....+. .+|... . .+..+++...+ ++...|+++|-+|+.|.
T Consensus 174 ~~~~~~~~~~~s~s~~~~p~~~~------~~~~~~~~~~g~~~--~---~~~~~d~~~l~~~~~~~~~~~i~id~G~~D~ 242 (299)
T 4fol_A 174 GYSGKRYKSCSAFAPIVNPSNVP------WGQKAFKGYLGEEK--A---QWEAYDPCLLIKNIRHVGDDRILIHVGDSDP 242 (299)
T ss_dssp TGGGTCCSEEEEESCCCCGGGSH------HHHHHHHHHTC----------CGGGCHHHHGGGSCCCTTCCEEEEEETTCT
T ss_pred CCCCCceEEEEecccccCccccc------ccccccccccccch--h---hhhhcCHHHHHHhcccCCCCceEEEecCCCc
Confidence 5 67899999999988754321 0011111 123221 1 11334443333 33344569999999998
Q ss_pred ccCCc-hHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHH-HHHHHHHHHHhcCC
Q 006375 580 RVMYS-EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLRE-AAFTYTFLMRALSM 639 (648)
Q Consensus 580 ~v~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~-~~~~~~fl~~~l~~ 639 (648)
..... .+..|.+++++++.+.. +.++..+|.+|. ..-+.. +.+.+.|..++||+
T Consensus 243 f~~~~l~~~~f~~a~~~~g~~~~-~~~r~~~GydHs-----y~f~~~fi~dhl~fha~~Lgl 298 (299)
T 4fol_A 243 FLEEHLKPELLLEAVKATSWQDY-VEIKKVHGFDHS-----YYFVSTFVPEHAEFHARNLGL 298 (299)
T ss_dssp THHHHTCTHHHHHHHTTSTTTTC-EEEEEETTCCSS-----HHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhhcCHHHHHHHHHhcCCCce-EEEEeCCCCCCC-----HHHHHHHHHHHHHHHHHhcCC
Confidence 75321 34678999998888764 456655566883 122222 44678999999997
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.3e-13 Score=131.85 Aligned_cols=108 Identities=10% Similarity=0.047 Sum_probs=72.8
Q ss_pred CCcEEEEecCCCCCCCCCCCch-----hHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc
Q 006375 405 SDPLLLYGYGSYEICNDPAFNS-----SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~-----~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 479 (648)
..|+||++||..+.... .|.. .+..|+ ++|.|+++|+||.|........ ......++++.+.+..+++.
T Consensus 34 ~~p~vvllHG~~~~~~~-~~~~~~~~~~~~~L~-~~~~vi~~D~~G~G~s~~~~~~----~~~~~~~~~~~~~l~~~l~~ 107 (286)
T 2qmq_A 34 KRPAIFTYHDVGLNYKS-CFQPLFRFGDMQEII-QNFVRVHVDAPGMEEGAPVFPL----GYQYPSLDQLADMIPCILQY 107 (286)
T ss_dssp TCCEEEEECCTTCCHHH-HHHHHHTSHHHHHHH-TTSCEEEEECTTTSTTCCCCCT----TCCCCCHHHHHHTHHHHHHH
T ss_pred CCCeEEEeCCCCCCchh-hhhhhhhhchhHHHh-cCCCEEEecCCCCCCCCCCCCC----CCCccCHHHHHHHHHHHHHH
Confidence 46899999996654321 0222 334454 5799999999998643211110 00012556666555555443
Q ss_pred CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 480 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
.+.+++.++|+|+||.+++.++.++|++++++|+.+|..
T Consensus 108 --l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 146 (286)
T 2qmq_A 108 --LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDP 146 (286)
T ss_dssp --HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred --hCCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCC
Confidence 233689999999999999999999999999999998854
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-12 Score=128.74 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=82.2
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCC
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 463 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 463 (648)
.+|.++.... . ++.|.||++||..+.. ..|...+..|+++ |.|+++|.||.|..... . ......
T Consensus 16 ~~g~~l~y~~-----~----G~g~~lvllHG~~~~~--~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~-~---~~~~~~ 79 (294)
T 1ehy_A 16 LPDVKIHYVR-----E----GAGPTLLLLHGWPGFW--WEWSKVIGPLAEH-YDVIVPDLRGFGDSEKP-D---LNDLSK 79 (294)
T ss_dssp CSSCEEEEEE-----E----ECSSEEEEECCSSCCG--GGGHHHHHHHHTT-SEEEEECCTTSTTSCCC-C---TTCGGG
T ss_pred ECCEEEEEEE-----c----CCCCEEEEECCCCcch--hhHHHHHHHHhhc-CEEEecCCCCCCCCCCC-c---cccccC
Confidence 4677665431 1 1247899999976543 3466666677655 99999999999876432 1 000002
Q ss_pred CcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 464 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 464 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
.+++++.+.+..+++.- ..+++.++|+||||.+++.++.++|++++++|+..+
T Consensus 80 ~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 132 (294)
T 1ehy_A 80 YSLDKAADDQAALLDAL--GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDP 132 (294)
T ss_dssp GCHHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECC
T ss_pred cCHHHHHHHHHHHHHHc--CCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecC
Confidence 35667776666666542 236899999999999999999999999999998875
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-11 Score=134.29 Aligned_cols=209 Identities=7% Similarity=-0.081 Sum_probs=137.1
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCC-----CCeEEEEEEEECCC------CCeeecc-c-cCccceeEEecCC-eEEEEEeC
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTK-----GDEIYTVYVIDIET------GTPVGKP-L-VGVTASVEWAGNE-ALVYITMD 145 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~-----G~e~~~l~v~dl~~------g~~~~~~-~-~~~~~~~~WspDg-~l~y~~~~ 145 (648)
......+.|||||++|+|+.... +....+|+++|+++ ++..... . ......++||||| +|+|...+
T Consensus 129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~ 208 (662)
T 3azo_A 129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWD 208 (662)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECC
Confidence 35678899999999999997641 13357999999998 6654433 2 2334569999999 99998865
Q ss_pred CCC---CCceEEEEECCC-CCC-CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc
Q 006375 146 EIL---RPDKAWLHKLEA-DQS-NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV 220 (648)
Q Consensus 146 ~~~---~~~~l~~~~l~~-~~~-~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~ 220 (648)
... ...+||.+++.+ +.. +...+.... ......+.|||||+ +++.++..+...||++|+++++ .+.++....
T Consensus 209 ~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~ 285 (662)
T 3azo_A 209 HPRMPWEGTELKTARVTEDGRFADTRTLLGGP-EEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA-ATQLCRREE 285 (662)
T ss_dssp TTCCTTTCEEEEEEEECTTSCEEEEEEEEEET-TBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC-EEESSCCSS
T ss_pred CCCCCCCCcEEEEEEECCCCcccccEEeCCCC-CceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc-eeecccccc
Confidence 422 235799999983 411 223333322 23445789999999 7777766666799999998876 666655322
Q ss_pred ce----------eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceE-EEeCCEEEEEEecC-C
Q 006375 221 GV----------DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDI-QLFIDHLAVYEREG-G 288 (648)
Q Consensus 221 ~~----------~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~ 288 (648)
.. .+.++++|+ +++..+. ...+|+.+++++. ..+.+ ..... .+..+ +++++.+++..... .
T Consensus 286 ~~~~p~w~~~~~~~~~~~~~~-~~~~~~~---~~~~l~~~d~~~~-~~~~l-~~~~~-~~~~~~s~~~~~~~~~~~~~~~ 358 (662)
T 3azo_A 286 EFAGPLWTPGMRWFAPLANGL-IAVVHGK---GAAVLGILDPESG-ELVDA-AGPWT-EWAATLTVSGTRAVGVAASPRT 358 (662)
T ss_dssp BSSCCCCSTTCCSEEECTTSC-EEEEEBS---SSCEEEEEETTTT-EEEEC-CSSCC-EEEEEEEEETTEEEEEEEETTE
T ss_pred cccCccccccCceEeEeCCCE-EEEEEEc---CccEEEEEECCCC-cEEEe-cCCCC-eEEEEEecCCCEEEEEEcCCCC
Confidence 21 233556665 6666654 3568999998763 33323 32222 34556 78888887766544 3
Q ss_pred eeEEEEEEcC
Q 006375 289 LQKITTYRLP 298 (648)
Q Consensus 289 ~~~l~v~~~~ 298 (648)
...+++++++
T Consensus 359 ~~~i~~~d~~ 368 (662)
T 3azo_A 359 AYEVVELDTV 368 (662)
T ss_dssp EEEEEEEETT
T ss_pred CCEEEEEECC
Confidence 4578888776
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.8e-13 Score=132.38 Aligned_cols=104 Identities=11% Similarity=0.088 Sum_probs=75.5
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|+||++||.........|...+..|. +||.|+++|+||.|.... ......+++++.+.+..+++.- ..+
T Consensus 41 ~p~vv~lHG~G~~~~~~~~~~~~~~L~-~~~~vi~~D~~G~G~S~~-------~~~~~~~~~~~~~~l~~~l~~~--~~~ 110 (292)
T 3l80_A 41 NPCFVFLSGAGFFSTADNFANIIDKLP-DSIGILTIDAPNSGYSPV-------SNQANVGLRDWVNAILMIFEHF--KFQ 110 (292)
T ss_dssp SSEEEEECCSSSCCHHHHTHHHHTTSC-TTSEEEEECCTTSTTSCC-------CCCTTCCHHHHHHHHHHHHHHS--CCS
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHHh-hcCeEEEEcCCCCCCCCC-------CCcccccHHHHHHHHHHHHHHh--CCC
Confidence 389999997211111123444444444 699999999999886531 1222356788887777777653 335
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
++.++|+|+||.++..++.++|++++++|+..|.
T Consensus 111 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 144 (292)
T 3l80_A 111 SYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPT 144 (292)
T ss_dssp EEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCC
T ss_pred CeEEEEEchhHHHHHHHHHhCchheeeEEEECCC
Confidence 8999999999999999999999999999998854
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.2e-12 Score=125.56 Aligned_cols=219 Identities=11% Similarity=0.007 Sum_probs=132.5
Q ss_pred EEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEcc--------CCCCCCChhhhhcccc
Q 006375 388 QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQI--------RGGGELGRQWYENGKF 459 (648)
Q Consensus 388 ~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~--------rG~g~~g~~~~~~~~~ 459 (648)
.+++.+++|++ .++.|+||.+||+.. .+.+||+++.+|+ +|+.++|. |+..-..
T Consensus 124 sf~~~i~lP~g----~~P~Pvii~~~~~~~-------------~~~~G~A~i~f~~~~va~d~~~gsrG~g~-f~~ly~~ 185 (433)
T 4g4g_A 124 SFSASIRKPSG----AGPFPAIIGIGGASI-------------PIPSNVATITFNNDEFGAQMGSGSRGQGK-FYDLFGR 185 (433)
T ss_dssp EEEEEEECCSS----SCCEEEEEEESCCCS-------------CCCTTSEEEEECHHHHSCCSSGGGTTCSH-HHHHHCT
T ss_pred EEEEEEECCCC----CCCccEEEEECCCcc-------------ccCCCeEEEEeCCcccccccCCCcCCccc-cccccCC
Confidence 46888888865 377899999987421 1457999999997 45556776 5532211
Q ss_pred cCCCCcH----hHHHHHHHHHHH----cCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc----
Q 006375 460 LKKKNTF----TDFIACAEYLIK----NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML---- 527 (648)
Q Consensus 460 ~~~~~~~----~D~~~~~~~l~~----~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~---- 527 (648)
......+ =|+..+++||.. +..+|++||+++|+|+||..++.+++..+ +|+++|+.++..+-...+.
T Consensus 186 ~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D~-Ri~~vi~~~sg~~G~~~~R~~~~ 264 (433)
T 4g4g_A 186 DHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALVD-RIALTIPQESGAGGAACWRISDQ 264 (433)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCTTTTSCHHHHHH
T ss_pred ccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcCC-ceEEEEEecCCCCchhhhhhchh
Confidence 1111111 377889999998 78899999999999999999999999875 7999999988665332110
Q ss_pred ----CCCC----------CCCcccccccCCCCCHHHHHHHHcCCcccc--CCCCCCC-eEEEeecCCCCccCCchHHHHH
Q 006375 528 ----DPTI----------PLTTAEWEEWGDPWKEEFYFYMKSYSPVDN--VKAQNYP-HILVTAGLNDPRVMYSEPAKFV 590 (648)
Q Consensus 528 ----~~~~----------~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~--~~~~~~P-~~li~~g~~D~~v~~~~~~~~~ 590 (648)
.+.+ .+....+..|.+. . .--|+++ +-..-.| |+||+.| +|..+++......+
T Consensus 265 ~~~~Ge~v~~~~~~~ge~~Wf~~~f~~y~~~--~-------~~LPfD~heL~ALiAPRPlLv~~g-~D~w~~p~g~~~a~ 334 (433)
T 4g4g_A 265 QKAAGANIQTAAQIITENPWFSRNFDPHVNS--I-------TSVPQDHHLLAALIVPRGLAVFEN-NIDWLGPVSTTGCM 334 (433)
T ss_dssp HHHTTCCCCCHHHHTTTCCCSCTTTGGGTTC--G-------GGSSCCGGGHHHHHTTSEEEEEEC-CCTTTCHHHHHHHH
T ss_pred hcccCcchhhhhcccCCccccchhhHhhccc--c-------ccCCcCHHHHHHhhCCceEEEecC-CCCcCCcHHHHHHH
Confidence 1111 0111111112110 0 0012211 1111223 6999999 88888876555444
Q ss_pred HHH----HhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCCC
Q 006375 591 AKL----REMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLP 641 (648)
Q Consensus 591 ~~l----~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 641 (648)
.++ +..|.+.++-.. ...+++|+...... ....++||.++|....
T Consensus 335 ~aa~~VY~~lGa~d~l~~~-~~ggH~Hc~fp~~~-----r~~~~~F~~k~Lkg~~ 383 (433)
T 4g4g_A 335 AAGRLIYKAYGVPNNMGFS-LVGGHNHCQFPSSQ-----NQDLNSYINYFLLGQG 383 (433)
T ss_dssp HHHHHHHHHHTCGGGEEEE-ECCSSCTTCCCGGG-----HHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCCccceEEE-eeCCCCcccCCHHH-----HHHHHHHHHHHhCCCC
Confidence 444 445777665443 33466775321111 1245789999996543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-11 Score=135.60 Aligned_cols=254 Identities=11% Similarity=0.012 Sum_probs=155.6
Q ss_pred EeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc--------CccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 87 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV--------GVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 87 ~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~--------~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
.++|||++++|.....|.+...||+++..+++....... .....++||||| .|+|+......+..+|+.++
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence 456999999999988887678999999887765432111 124569999999 99999887666678899999
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcccc----------ccEEEEEECCCCC-ceeEeeeccc----ce
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI----------TRFVFYLDVSKPE-ELRVLTPRVV----GV 222 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~----------~~~l~~~dl~~~~-~~~~l~~~~~----~~ 222 (648)
+.++........ .... ...+.|||||+.|++.+.... ..+||++++.++. ..+++..... ..
T Consensus 154 l~tg~~~~~~~~--~~~~-~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~ 230 (695)
T 2bkl_A 154 VDSGEWSKVDVI--EGGK-YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL 230 (695)
T ss_dssp TTTCCBCSSCCB--SCCT-TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred CCCCCCcCCccc--Cccc-ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence 998742100011 1111 136789999999999876442 4689999998876 2234443321 12
Q ss_pred eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecC-CeeEEEEEEcCCCC
Q 006375 223 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREG-GLQKITTYRLPAVG 301 (648)
Q Consensus 223 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~l~v~~~~~~g 301 (648)
...|||||++|++.++.. ....+|+.++..+ +..+.+....... ...+...++ +++....+ ...+|++++++.
T Consensus 231 ~~~~SpDG~~l~~~~~~~-~~~~~l~~~~~~~-~~~~~l~~~~~~~-~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~-- 304 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRG-WSENDVYWKRPGE-KDFRLLVKGVGAK-YEVHAWKDR-FYVLTDEGAPRQRVFEVDPAK-- 304 (695)
T ss_dssp EEEECTTSCCEEEEEEET-TTEEEEEEECTTC-SSCEEEEECSSCC-EEEEEETTE-EEEEECTTCTTCEEEEEBTTB--
T ss_pred EEEECCCCCEEEEEEeCC-CCceEEEEEcCCC-CceEEeecCCCce-EEEEecCCc-EEEEECCCCCCCEEEEEeCCC--
Confidence 456999999999988763 2456888887654 3333355443322 222233445 65555433 356788888763
Q ss_pred CcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCC
Q 006375 302 EPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMG 355 (648)
Q Consensus 302 ~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 355 (648)
.....+ +.+.-+.+...+.++.+. ++.+++.... ..-.+++.+++.++
T Consensus 305 ~~~~~~---~~l~~~~~~~~l~~~~~~--~~~lv~~~~~-dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 305 PARASW---KEIVPEDSSASLLSVSIV--GGHLSLEYLK-DATSEVRVATLKGK 352 (695)
T ss_dssp CSGGGC---EEEECCCSSCEEEEEEEE--TTEEEEEEEE-TTEEEEEEEETTCC
T ss_pred CCccCC---eEEecCCCCCeEEEEEEE--CCEEEEEEEE-CCEEEEEEEeCCCC
Confidence 211000 112111112223333332 4556665543 34467888887544
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-09 Score=113.34 Aligned_cols=292 Identities=15% Similarity=0.119 Sum_probs=171.4
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..+.|||||++|+++....+ .|+++|+++++.... ........++|+||| .++++.. ....|+.+++.
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~----~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~----~~~~v~~~d~~ 146 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASS----TLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN----GDKTVSVINTV 146 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTT----EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET----TTTEEEEEETT
T ss_pred CccceEECCCCCEEEEEECCCC----EEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeC----CCCEEEEEECC
Confidence 5678899999999988865444 799999999887643 222234569999999 7766653 23469999998
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEec
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRR 238 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~ 238 (648)
++ +....+... .....+.|+|||++|++... ....|+++|+.+++ .......... ....++|+|+.|++...
T Consensus 147 ~~--~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~--~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 147 TK--AVINTVSVG--RSPKGIAVTPDGTKVYVANF--DSMSISVIDTVTNS-VIDTVKVEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp TT--EEEEEEECC--SSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTE-EEEEEECSSEEEEEEECTTSSEEEEEEE
T ss_pred CC--cEEEEEecC--CCcceEEECCCCCEEEEEeC--CCCEEEEEECCCCe-EEEEEecCCCccceEECCCCCEEEEEec
Confidence 76 233333322 22346789999999876543 24679999998876 3333322222 23458999998887765
Q ss_pred cCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEe--CCEEEEEEecCCeeEEEEEEcCCCCCcccccCCC-ce---
Q 006375 239 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGG-KS--- 312 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~-~~--- 312 (648)
. ..+..|.++|+.+.. ....++.... +..+.+. ++.+++....+ ..+.++++.. +.....+... .+
T Consensus 220 ~--~~~~~v~~~d~~~~~-~~~~~~~~~~--~~~~~~s~dg~~l~~s~~~d--~~v~v~d~~~-~~~~~~~~~~~~~~~~ 291 (391)
T 1l0q_A 220 D--KYFNTVSMIDTGTNK-ITARIPVGPD--PAGIAVTPDGKKVYVALSFX--NTVSVIDTAT-NTITATMAVGKNPYAS 291 (391)
T ss_dssp C--SSCCEEEEEETTTTE-EEEEEECCSS--EEEEEECTTSSEEEEEETTT--TEEEEEETTT-TEEEEEEECSSSEECC
T ss_pred C--cCCCcEEEEECCCCe-EEEEEecCCC--ccEEEEccCCCEEEEEcCCC--CEEEEEECCC-CcEEEEEECCcCCCcc
Confidence 2 234689999987632 2224443332 4455555 44666665544 4678888874 2211111110 00
Q ss_pred ---ee-cCCCe-eeeeCCCCcccccEE--E--EEEeeCCCCCEEEEEECCCCcEEEEEEeeecCCCCCCCcceEEEEEeC
Q 006375 313 ---VE-FIDPV-YSIDPSESVFSSRIL--R--FHYSSLRTPPSVYDYDMDMGISVLKKIETVLGGFDTNNYFTERKWASA 383 (648)
Q Consensus 313 ---i~-~~~~~-~~v~~~~~~~~~~~l--~--~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 383 (648)
+. .|... +.+..+..+...... . +.+.+.......+.++..+|.... .......|.+...-..++++++
T Consensus 292 ~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~--~~~~~~~~~~~g~y~~~~~~~~ 369 (391)
T 1l0q_A 292 GQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK--KQNPTHTYSETGIYTVRLTVSN 369 (391)
T ss_dssp SSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC--SSSCEECCSSCEEEEEEEEEEE
T ss_pred ceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC--cCCCeEEeCCCceEEEEEEEEC
Confidence 00 11000 000001111111110 0 333455566778899998887321 1111125667776678888999
Q ss_pred CCC--eEEeEEEEEeeC
Q 006375 384 SDG--TQIPICIVYRKN 398 (648)
Q Consensus 384 ~~g--~~i~~~l~~~~~ 398 (648)
.+| .+++...++++.
T Consensus 370 ~~g~~~~~~~~~v~~~~ 386 (391)
T 1l0q_A 370 SNGTDSQISTVNVVLKG 386 (391)
T ss_dssp TTEEEEEEEEEEEECTT
T ss_pred CCCcEEEEEEEEEEcCC
Confidence 999 467877777654
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.6e-12 Score=130.12 Aligned_cols=122 Identities=15% Similarity=0.084 Sum_probs=89.3
Q ss_pred CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHC---------CCEEEEEccCCCCCCChhh
Q 006375 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR---------GFIFAIAQIRGGGELGRQW 453 (648)
Q Consensus 383 s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~---------G~~v~~~~~rG~g~~g~~~ 453 (648)
..+|.+|+.....++. +..|.||++||.+++.. .|...+..|.+. ||.|+++|.||.|.....
T Consensus 74 ~i~g~~i~~~~~~~~~-----~~~~plll~HG~~~s~~--~~~~~~~~L~~~~~~~~~~~~~~~vi~~dl~G~G~S~~~- 145 (388)
T 4i19_A 74 EIDGATIHFLHVRSPE-----PDATPMVITHGWPGTPV--EFLDIIGPLTDPRAHGGDPADAFHLVIPSLPGFGLSGPL- 145 (388)
T ss_dssp EETTEEEEEEEECCSS-----TTCEEEEEECCTTCCGG--GGHHHHHHHHCGGGGTSCGGGCEEEEEECCTTSGGGCCC-
T ss_pred EECCeEEEEEEccCCC-----CCCCeEEEECCCCCCHH--HHHHHHHHHhCcccccCCCCCCeEEEEEcCCCCCCCCCC-
Confidence 3478888865443322 34578999999776543 355666667665 999999999998754321
Q ss_pred hhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 454 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 454 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
......++++...+..+++. ...+++.++|+||||.++..++.++|+.++++|+..|..
T Consensus 146 ------~~~~~~~~~~a~~~~~l~~~--lg~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 204 (388)
T 4i19_A 146 ------KSAGWELGRIAMAWSKLMAS--LGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQT 204 (388)
T ss_dssp ------SSCCCCHHHHHHHHHHHHHH--TTCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCCC
T ss_pred ------CCCCCCHHHHHHHHHHHHHH--cCCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCCC
Confidence 11134677888877777665 233689999999999999999999999999999998643
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-12 Score=128.90 Aligned_cols=226 Identities=15% Similarity=0.076 Sum_probs=136.0
Q ss_pred eEEEEEeCC-CCeEEeEEEEEeeCcccc-CCCCcEEEEecCCCCCCCCCCCchhHHHHHH------CCCEEEEEccCCCC
Q 006375 376 TERKWASAS-DGTQIPICIVYRKNLVKL-DGSDPLLLYGYGSYEICNDPAFNSSRLSLLD------RGFIFAIAQIRGGG 447 (648)
Q Consensus 376 ~~~~~~~s~-~g~~i~~~l~~~~~~~~~-~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~------~G~~v~~~~~rG~g 447 (648)
.+.+.+.|. -|.+..++++.|++. .. ++++|+|+++||..... ........+.. .+++|+.++..
T Consensus 12 v~~~~~~S~~l~~~r~~~VylP~~y-~~~~~~yPVlylldG~~~f~---~~~~~~~~l~~~~~~~~~~~IvV~i~~~--- 84 (331)
T 3gff_A 12 YQSKRLESRLLKETREYVIALPEGY-AQSLEAYPVVYLLDGEDQFD---HMASLLQFLSQGTMPQIPKVIIVGIHNT--- 84 (331)
T ss_dssp EEEEEEEETTTTEEEEEEEECCTTG-GGSCCCEEEEEESSHHHHHH---HHHHHHHHHTCSSSCSSCCCEEEEECCS---
T ss_pred EEEEEEEecCCCCeEEEEEEeCCCC-CCCCCCccEEEEecChhhhH---HHHHHHHHHHhhhhcCCCCEEEEEECCC---
Confidence 455566655 477899999999987 44 57799999999942100 00111223332 25788887651
Q ss_pred CCChhhhhc-------c------cc-cCCCCcHhHHH--HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCcee
Q 006375 448 ELGRQWYEN-------G------KF-LKKKNTFTDFI--ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK 511 (648)
Q Consensus 448 ~~g~~~~~~-------~------~~-~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~ 511 (648)
....++... | .. ..+...+.+++ ..+.++.++..+++.| +|+|+||||++++.++.++|++|+
T Consensus 85 ~R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p~~F~ 163 (331)
T 3gff_A 85 NRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDRPLFS 163 (331)
T ss_dssp SHHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTCSSCS
T ss_pred CcccccCCCccccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCchhhh
Confidence 111111100 0 00 11112344444 4566666666677655 899999999999999999999999
Q ss_pred EEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCC-------ccCCc
Q 006375 512 AAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDP-------RVMYS 584 (648)
Q Consensus 512 a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~-------~v~~~ 584 (648)
++++.+|.+.+- +. ...+.+.. .+........| +++.||+.|. +++..
T Consensus 164 ~~~~~S~~~w~~-------------------~~---~~~~~~~~--~~~~~~~~~~~-l~l~~G~~d~~~~~~~~~~~~~ 218 (331)
T 3gff_A 164 AYLALDTSLWFD-------------------SP---HYLTLLEE--RVVKGDFKQKQ-LFMAIANNPLSPGFGVSSYHKD 218 (331)
T ss_dssp EEEEESCCTTTT-------------------TT---HHHHHHHH--HHHHCCCSSEE-EEEEECCCSEETTTEECCHHHH
T ss_pred eeeEeCchhcCC-------------------hH---HHHHHHHH--HhhcccCCCCe-EEEEeCCCCCCCccchHHHHHH
Confidence 999999864311 10 11111111 01111112344 9999999998 67788
Q ss_pred hHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 585 EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 585 ~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
.+++++++|++.+...-.+.+...++++|+... ...+.+.+.||......
T Consensus 219 ~~~~l~~~Lk~~~~~g~~~~~~~~pg~~H~sv~-----~~~~~~~l~~lf~~~~~ 268 (331)
T 3gff_A 219 LNLAFADKLTKLAPKGLGFMAKYYPEETHQSVS-----HIGLYDGIRHLFKDFAI 268 (331)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEEECTTCCTTTHH-----HHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhccCCCceEEEEECCCCCccccH-----HHHHHHHHHHHHhhcCC
Confidence 889999999987432212444555588996422 22344567787777665
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-10 Score=115.08 Aligned_cols=228 Identities=14% Similarity=0.068 Sum_probs=144.3
Q ss_pred EEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC-CCCCcEEEEeecCCCeEEEEEe
Q 006375 106 IYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA-DQSNDICLYHEKDDIYSLGLQA 182 (648)
Q Consensus 106 ~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 182 (648)
..+|+++|+.+++..... .......++|+||| .|++.. + ..|+++++.+ + +...+...........+.|
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~-----~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-E-----GLLYRLSLAGDP--SPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-T-----TEEEEEESSSCC--SCEECCCTTCCCBCSCCEE
T ss_pred ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-C-----CeEEEEeCCCCC--CceEeccccccccccceEE
Confidence 568999999998876432 23344569999999 777753 1 3699999988 5 2333333222233345789
Q ss_pred CCCCcEEEEEEccc-cccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeE
Q 006375 183 SESKKFLFIASESK-ITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVL 261 (648)
Q Consensus 183 s~Dg~~l~~~~~~~-~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 261 (648)
+|||++|++..... ....||.+++.++. .+.+..........|+|||+.|++....+ ...+|+.+++.+ +....+
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~--~~~~l~~~~~~~-~~~~~~ 168 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRD--QVFDIYSMDIDS-GVETRL 168 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEET--TEEEEEEEETTT-CCEEEC
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCC--CceEEEEEECCC-CcceEc
Confidence 99999999876433 46899999998876 66665443333456999999999887653 346888888865 223223
Q ss_pred ecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEe
Q 006375 262 IPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYS 339 (648)
Q Consensus 262 ~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~s 339 (648)
..+.. .+..+.+.+ +.+++....++..+++.++++ ++.+..+. .....+..+.+++++..+++...
T Consensus 169 ~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~--~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 169 THGEG--RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD--GSSVERIT--------DSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp CCSSS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETT--SSCEEECC--------CCSEEEEEEEECTTSSEEEEEEE
T ss_pred ccCCC--ccccceECCCCCEEEEEecCCCCccEEEECCC--CCCcEEEe--------cCCcccCCeEECCCCCEEEEEEc
Confidence 33322 245555554 456666655666677766655 44332221 11122333556678887766655
Q ss_pred eCC-------CCCEEEEEECCCCcE
Q 006375 340 SLR-------TPPSVYDYDMDMGIS 357 (648)
Q Consensus 340 s~~-------~P~~~~~~d~~~~~~ 357 (648)
... ....++.+|+.+++.
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CCCCCcccccCceEEEEEecCCCCc
Confidence 432 235799999988874
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=129.91 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=75.7
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
+.|.||++||..+... .|...+..|.+ .|.|+++|.||.|..... .....+++++.+.+..+++. .+.
T Consensus 42 ~~~~vvllHG~~~~~~--~w~~~~~~L~~-~~~via~Dl~GhG~S~~~-------~~~~~~~~~~a~dl~~ll~~--l~~ 109 (318)
T 2psd_A 42 AENAVIFLHGNATSSY--LWRHVVPHIEP-VARCIIPDLIGMGKSGKS-------GNGSYRLLDHYKYLTAWFEL--LNL 109 (318)
T ss_dssp TTSEEEEECCTTCCGG--GGTTTGGGTTT-TSEEEEECCTTSTTCCCC-------TTSCCSHHHHHHHHHHHHTT--SCC
T ss_pred CCCeEEEECCCCCcHH--HHHHHHHHhhh-cCeEEEEeCCCCCCCCCC-------CCCccCHHHHHHHHHHHHHh--cCC
Confidence 3468999999765443 34544555554 579999999999875432 11124577887777777765 233
Q ss_pred -CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 485 -EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 485 -~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
+++.++|+||||.+++.++.++|++++++|+..+
T Consensus 110 ~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~ 144 (318)
T 2psd_A 110 PKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMES 144 (318)
T ss_dssp CSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEE
T ss_pred CCCeEEEEEChhHHHHHHHHHhChHhhheEEEecc
Confidence 7899999999999999999999999999998654
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-13 Score=134.42 Aligned_cols=221 Identities=12% Similarity=-0.037 Sum_probs=109.9
Q ss_pred ceEEEEEeCCCCeE-EeEEEEEeeCccc-----cCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCC
Q 006375 375 FTERKWASASDGTQ-IPICIVYRKNLVK-----LDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGE 448 (648)
Q Consensus 375 ~~~~~~~~s~~g~~-i~~~l~~~~~~~~-----~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~ 448 (648)
..+.+++++.++.. ...|+..+..... ..+..|.||++||..+... .|...+..|.+ ||.|+++|+||.|.
T Consensus 14 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvllHG~~~~~~--~~~~l~~~L~~-~~~v~~~D~~G~G~ 90 (280)
T 3qmv_A 14 GTENLYFQSNALLSQRSAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVS--AFRGWQERLGD-EVAVVPVQLPGRGL 90 (280)
T ss_dssp --------------CHHHHSCCCCCCCCCCCCCTTTCSEEEEEECCTTCCGG--GGTTHHHHHCT-TEEEEECCCTTSGG
T ss_pred CcceeeeecchhhhhcchheecCCCCCcccccccCCCCceEEEECCCCCChH--HHHHHHHhcCC-CceEEEEeCCCCCC
Confidence 45667777776632 2233222211100 0112388999999665433 35665666665 99999999999775
Q ss_pred CChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCcee----EEEecCCcccccc
Q 006375 449 LGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK----AAVAAVPFVDVLT 524 (648)
Q Consensus 449 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~----a~v~~~~~~d~~~ 524 (648)
... ......++++.+.+..+++.- ...+++.++|+|+||.+++.++.++|+++. .+++.....-...
T Consensus 91 S~~--------~~~~~~~~~~a~~~~~~l~~~-~~~~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~ 161 (280)
T 3qmv_A 91 RLR--------ERPYDTMEPLAEAVADALEEH-RLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLY 161 (280)
T ss_dssp GTT--------SCCCCSHHHHHHHHHHHHHHT-TCSSSEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGC
T ss_pred CCC--------CCCCCCHHHHHHHHHHHHHHh-CCCCCEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCc
Confidence 421 112244566655555444432 134789999999999999999999887655 5554433221110
Q ss_pred cccCCCCCCCcccc----ccc-CCCC----C-----------HHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCc
Q 006375 525 TMLDPTIPLTTAEW----EEW-GDPW----K-----------EEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYS 584 (648)
Q Consensus 525 ~~~~~~~~~~~~~~----~~~-g~~~----~-----------~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~ 584 (648)
... .........+ ..+ +.+. + ...+..+..+.+. .+.++++| +|+++|++|..+++.
T Consensus 162 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~P-~l~i~G~~D~~~~~~ 238 (280)
T 3qmv_A 162 GDR-ADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWH-PRPPLDCP-TTAFSAAADPIATPE 238 (280)
T ss_dssp SCC-CGGGSCHHHHHHHHHHHTCCC---------CCTTHHHHHHHHHHHHTCCCC-CCCCBCSC-EEEEEEEECSSSCHH
T ss_pred Ccc-cccccCHHHHHHHHHHhCCCChhhhcCHHHHHHHHHHHHHHHHHHHhcccc-CCCceecC-eEEEEecCCCCcChH
Confidence 000 0000000000 011 1110 0 0112222333332 24567888 999999999999976
Q ss_pred hHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC
Q 006375 585 EPAKFVAKLREMKTDDNILLFKCELGAGHFSKS 617 (648)
Q Consensus 585 ~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~ 617 (648)
...++.+.+. ...+.+++ ++||+...
T Consensus 239 ~~~~~~~~~~---~~~~~~~~----~ggH~~~~ 264 (280)
T 3qmv_A 239 MVEAWRPYTT---GSFLRRHL----PGNHFFLN 264 (280)
T ss_dssp HHHTTGGGBS---SCEEEEEE----EEETTGGG
T ss_pred HHHHHHHhcC---CceEEEEe----cCCCeEEc
Confidence 6665544332 12233344 34897654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.9e-10 Score=111.67 Aligned_cols=221 Identities=14% Similarity=0.152 Sum_probs=145.0
Q ss_pred eEeCCEEEEEEecCCce---------EEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCcEEEeeEEe
Q 006375 18 FRQGSYYYYTRTLEGKE---------YVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQV 88 (648)
Q Consensus 18 ~~~g~~~y~~~~~~g~~---------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~ 88 (648)
...|+|.||.....+++ ..-+||....+ ...++|.+.. ...|
T Consensus 61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg-----------------~~~~~l~~~~------------~~~~ 111 (302)
T 3s25_A 61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG-----------------HGSTVLDPDP------------CIYA 111 (302)
T ss_dssp EECSSEEEEEEECC------CCSSCCSEEEEEEETTS-----------------CCCEEEECSC------------EEEE
T ss_pred EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC-----------------CcceEeecCC------------ccEE
Confidence 45799999998776532 22356665542 1234443311 2268
Q ss_pred CCCCCEEEEEE-eCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcE
Q 006375 89 SPDNKLVAYAE-DTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDI 166 (648)
Q Consensus 89 SPDG~~la~~~-~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~ 166 (648)
||+|++|+|+. +..+ ...|+.+++++......+.... ..|+++| .|+|+.. ...+|++.++.++ ..+
T Consensus 112 s~~g~~Iy~~~~~~~~--~~~Iy~~~~dGs~~~~lt~~~~---~~~~~~g~~iy~t~~----g~~~Iy~~~l~g~--~~~ 180 (302)
T 3s25_A 112 SLIGNYIYYLHYDTQT--ATSLYRIRIDGEEKKKIKNHYL---FTCNTSDRYFYYNNP----KNGQLYRYDTASQ--SEA 180 (302)
T ss_dssp EEETTEEEEEEESSSS--CEEEEEEETTSCCCEEEESSCC---CCSEEETTEEEEECT----TTCCEEEEETTTT--EEE
T ss_pred EEeCCEEEEEeecCCC--CceEEEEECCCCCeEEEeCCCc---eEeeEECCEEEEEeC----CCceEEEEECCCC--CEE
Confidence 99999999997 3334 4789999999765443322222 3467789 9999853 3456999999876 344
Q ss_pred EEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCCCCCcE
Q 006375 167 CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSE 246 (648)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 246 (648)
+++.. . .. .+ ++|+|++|+++.... ...|+++++++.. .+.|+... ...++|+|++||+.+... ...
T Consensus 181 ~l~~~--~-~~-~~-~~P~g~~iy~t~~~~-~~~I~~~~ldG~~-~~~Lt~~~---~~~~~~~g~~Iy~~~~~~---~~~ 247 (302)
T 3s25_A 181 LFYDC--N-CY-KP-VVLDDTNVYYMDVNR-DNAIVHVNINNPN-PVVLTEAN---IEHYNVYGSLIFYQRGGD---NPA 247 (302)
T ss_dssp EEECS--C-EE-EE-EEEETTEEEEEEGGG-TTEEEEECSSSCC-CEECSCSC---EEEEEEETTEEEEEECSS---SCE
T ss_pred EEeCC--C-cc-ce-eeecCCEEEEEEcCC-CcEEEEEECCCCC-eEEEeCCC---cceEEECCCEEEEEECCC---CcE
Confidence 55432 2 22 23 459999999876543 3799999999987 66665432 245899999999987652 268
Q ss_pred EEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 247 LLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
|+++++++.. .+.+.. . .+..+.++++++++.....+ .|+.++++
T Consensus 248 i~~~~~DG~~-r~~l~~-~---~~~~i~i~~d~Iy~td~~~~--~i~~~~~d 292 (302)
T 3s25_A 248 LCVVKNDGTG-FKELAK-G---EFCNINVTSQYVYFTDFVSN--KEYCTSTQ 292 (302)
T ss_dssp EEEEETTSCC-CEEEEE-S---CEEEEEECSSEEEEEETTTC--CEEEEESS
T ss_pred EEEEECCCCc-cEEeeC-C---ccceEEEeCCEEEEEECCCC--eEEEEECC
Confidence 9999998743 332433 2 14578899999998876554 36667766
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-12 Score=130.34 Aligned_cols=151 Identities=12% Similarity=0.041 Sum_probs=93.9
Q ss_pred cCCCCCCeEEEEeeChhHHHHHHHHhhCCCcee-EEEecCCcccccccccCCCCCCCcccccc-cCCCCCHHHH-HHHHc
Q 006375 479 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFK-AAVAAVPFVDVLTTMLDPTIPLTTAEWEE-WGDPWKEEFY-FYMKS 555 (648)
Q Consensus 479 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~-a~v~~~~~~d~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~-~~~~~ 555 (648)
+..+|++||+|+|+|+||++++.++..+|+.|+ ++++.++....... ... ....+.. ++.+..++.. ..+..
T Consensus 5 ~~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (318)
T 2d81_A 5 AFNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCAR----NQY-YTSCMYNGYPSITTPTANMKSWSG 79 (318)
T ss_dssp CCCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTS----SSC-GGGGSTTCCCCCHHHHHHHHHHBT
T ss_pred hcCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccc----hHH-HHHHhhccCCCCCCHHHHHHHhhc
Confidence 345899999999999999999999999999998 77666552211000 000 0000000 1111111211 22222
Q ss_pred CCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCC--CCCeEEEEecCCCCccCCCchH-------------
Q 006375 556 YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKT--DDNILLFKCELGAGHFSKSGRF------------- 620 (648)
Q Consensus 556 ~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~gH~~~~~~~------------- 620 (648)
+++..+.+++.||+||+||++|++||+.++++++++|++.+. +.+++.+ +++||.......
T Consensus 80 -~~i~~~~~l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~g~~~~ve~~~~---~g~gH~~~~~~~~~~~~~c~~~~~p 155 (318)
T 2d81_A 80 -NQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTT---TGAVHTFPTDFNGAGDNSCSLSTSP 155 (318)
T ss_dssp -TTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEE---TTCCSSEEESSCCTTCCCTTSCCTT
T ss_pred -ccCChhHcCCCCcEEEEeCCCCCCcCHHHHHHHHHHHHhcCCCcceEEEEe---CCCCCCCccCCcccCccccccCCCC
Confidence 455555555455799999999999999999999999998872 3343444 488995422111
Q ss_pred ----HHHHHHHHHHHHHHHhcC
Q 006375 621 ----ERLREAAFTYTFLMRALS 638 (648)
Q Consensus 621 ----~~~~~~~~~~~fl~~~l~ 638 (648)
..+.....++.||...|.
T Consensus 156 yi~~~~~d~~~~i~~ff~g~~~ 177 (318)
T 2d81_A 156 YISNCNYDGAGAALKWIYGSLN 177 (318)
T ss_dssp CEEECSSCHHHHHHHHHHSSCC
T ss_pred cccCCCChHHHHHHHHHhccCC
Confidence 013444567899988764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-09 Score=112.78 Aligned_cols=240 Identities=11% Similarity=0.040 Sum_probs=150.7
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
+..+.|||||++|+++...+| +|+++|+++++.+.. ........++|+||| .|++.... ...|+.+++.+
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~----~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~----~~~v~v~d~~~ 105 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSN----DVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA----SSTLSVIDTTS 105 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGT----EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT----TTEEEEEETTT
T ss_pred cceEEECCCCCEEEEECCCCC----eEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECC----CCEEEEEECCC
Confidence 467899999999988765444 799999999987643 223334569999999 77766432 24599999987
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccceeeeEeecCCEEEEEecc
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGVDTAASHRGNHFFITRRS 239 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~~~~~~s~dg~~l~~~~~~ 239 (648)
+ +....+... .....+.|+|||++|++... ....|+++|+.+++ ...... ........|+|+|+.|++....
T Consensus 106 ~--~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 106 N--TVAGTVKTG--KSPLGLALSPDGKKLYVTNN--GDKTVSVINTVTKA-VINTVSVGRSPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp T--EEEEEEECS--SSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTE-EEEEEECCSSEEEEEECTTSSEEEEEETT
T ss_pred C--eEEEEEeCC--CCcceEEECCCCCEEEEEeC--CCCEEEEEECCCCc-EEEEEecCCCcceEEECCCCCEEEEEeCC
Confidence 6 223333322 23457889999999977543 34689999998876 333322 2222345699999988776543
Q ss_pred CCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEe--CCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCC
Q 006375 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID 317 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~ 317 (648)
+..|+++|+.+. .....+.... .+..+.+. ++.+++.........+.++++.. +..+ ..+....
T Consensus 179 ----~~~v~~~d~~~~-~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~-~~~~------~~~~~~~ 244 (391)
T 1l0q_A 179 ----SMSISVIDTVTN-SVIDTVKVEA--APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-NKIT------ARIPVGP 244 (391)
T ss_dssp ----TTEEEEEETTTT-EEEEEEECSS--EEEEEEECTTSSEEEEEEECSSCCEEEEEETTT-TEEE------EEEECCS
T ss_pred ----CCEEEEEECCCC-eEEEEEecCC--CccceEECCCCCEEEEEecCcCCCcEEEEECCC-CeEE------EEEecCC
Confidence 247888998763 2222444332 34455554 44666555433456788999873 2211 1122111
Q ss_pred CeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 318 PVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 318 ~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
.+..+.+++++..++++.+ .-..++.+|+.+++.
T Consensus 245 ---~~~~~~~s~dg~~l~~s~~---~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 245 ---DPAGIAVTPDGKKVYVALS---FXNTVSVIDTATNTI 278 (391)
T ss_dssp ---SEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEE
T ss_pred ---CccEEEEccCCCEEEEEcC---CCCEEEEEECCCCcE
Confidence 1223445677776655543 237899999998873
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-10 Score=133.81 Aligned_cols=255 Identities=10% Similarity=0.012 Sum_probs=153.6
Q ss_pred EeeEEeC-CCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc-cC-ccceeEEecCC-eEEEEEeCCCCCCceEE-EEE
Q 006375 83 VGCFQVS-PDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VG-VTASVEWAGNE-ALVYITMDEILRPDKAW-LHK 157 (648)
Q Consensus 83 ~~~~~~S-PDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~-~~~~~~WspDg-~l~y~~~~~~~~~~~l~-~~~ 157 (648)
+..+.|| |||++|||.. .+ +|+++++.+++...... .+ ....++|+ || .|+|... ...+| .++
T Consensus 298 v~~~~~S~pdG~~la~~~--~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-----~~~l~~~~d 365 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVS--RG----QAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-----EGDFLGIYD 365 (1045)
T ss_dssp GGEEEEEECGGGCEEEEE--TT----EEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-----TEEEEEEEE
T ss_pred cceeeecCCCCCEEEEEE--cC----EEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-----CCceEEEEE
Confidence 4678999 9999999987 23 79999999887654322 22 34569999 99 8887654 35789 889
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-ccc-eeeeEeecCCEEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHFFI 235 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-~~~-~~~~~s~dg~~l~~ 235 (648)
+.++. ...+. ........+.|||||++|++.+.. ..|+++|+++++ .+.+... ... ....|||||++|++
T Consensus 366 ~~~~~--~~~l~--~~~~~~~~~~~SpDG~~la~~~~~---~~v~~~d~~tg~-~~~~~~~~~~~v~~~~~SpDG~~la~ 437 (1045)
T 1k32_A 366 YRTGK--AEKFE--ENLGNVFAMGVDRNGKFAVVANDR---FEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAY 437 (1045)
T ss_dssp TTTCC--EEECC--CCCCSEEEEEECTTSSEEEEEETT---SEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred CCCCC--ceEec--CCccceeeeEECCCCCEEEEECCC---CeEEEEECCCCc-eEEeccCCCCCccceEECCCCCeEEE
Confidence 87762 22222 222344578999999999976543 589999999987 6666532 222 34569999999988
Q ss_pred EeccC-----CCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCe---------------eEEEEE
Q 006375 236 TRRSD-----ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGL---------------QKITTY 295 (648)
Q Consensus 236 ~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------~~l~v~ 295 (648)
.+... ......|+++|+++. ....+..+........|+++++.+++...+++. .+++++
T Consensus 438 ~~~~~~~~~~~~~~~~i~l~d~~~g-~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1045)
T 1k32_A 438 GFPLKHGETDGYVMQAIHVYDMEGR-KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI 516 (1045)
T ss_dssp EEEECSSTTCSCCEEEEEEEETTTT-EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEE
T ss_pred EecCccccccCCCCCeEEEEECCCC-cEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEE
Confidence 87642 123468999999763 332233333222222344455667766553331 123444
Q ss_pred EcCCCCCcc--------------cccCC--CceeecCCCeeeeeCCCCcccccEEEE---------EEeeCCCCCEEEEE
Q 006375 296 RLPAVGEPL--------------KSLQG--GKSVEFIDPVYSIDPSESVFSSRILRF---------HYSSLRTPPSVYDY 350 (648)
Q Consensus 296 ~~~~~g~~~--------------~~l~~--~~~i~~~~~~~~v~~~~~~~~~~~l~~---------~~ss~~~P~~~~~~ 350 (648)
.+...+..+ ..+.. .....++.+...+..+..++++..++. .+++...+..+|.|
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 596 (1045)
T 1k32_A 517 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 596 (1045)
T ss_dssp ESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEE
T ss_pred EeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEE
Confidence 333212111 00000 011223322223333445566643332 23466778899999
Q ss_pred ECCCCcEE
Q 006375 351 DMDMGISV 358 (648)
Q Consensus 351 d~~~~~~~ 358 (648)
|+.+++..
T Consensus 597 d~~~~~~~ 604 (1045)
T 1k32_A 597 DVKTRKVT 604 (1045)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEE
Confidence 99999843
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-09 Score=108.50 Aligned_cols=226 Identities=6% Similarity=0.106 Sum_probs=150.9
Q ss_pred CCeEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCcEEEeeEEeCCCCCEE
Q 006375 16 APFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLV 95 (648)
Q Consensus 16 ~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~SPDG~~l 95 (648)
.....|+++||.-... ...+||.+..+ ...+.|.|-. .-.++|+|++|
T Consensus 20 ~~~~~g~~iy~~n~~d---~~~ly~~~~dg-----------------~~~~~l~~~~------------~~~i~~~g~~I 67 (302)
T 3s25_A 20 LFCESDGEVFFSNTND---NGRLYAMNIDG-----------------SNIHKLSNDT------------AMYINADKNYV 67 (302)
T ss_dssp CEEEETTEEEEEEGGG---TTEEEEEETTS-----------------CSCEEEEEEE------------EEEEEECSSEE
T ss_pred EEEEeCCEEEEEeCCC---CceEEEEcCCC-----------------CCCEEccCCc------------eeeEEEcCCEE
Confidence 3457899999986532 24688888653 1334444411 12568999999
Q ss_pred EEEEeCCCC---------eEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCc
Q 006375 96 AYAEDTKGD---------EIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSND 165 (648)
Q Consensus 96 a~~~~~~G~---------e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~ 165 (648)
.|+....+. .+..|+.+++++++....... ....|++++ +|+|+... ......||++++++. ..
T Consensus 68 yy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~---~~~~~s~~g~~Iy~~~~~-~~~~~~Iy~~~~dGs--~~ 141 (302)
T 3s25_A 68 YYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD---PCIYASLIGNYIYYLHYD-TQTATSLYRIRIDGE--EK 141 (302)
T ss_dssp EEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS---CEEEEEEETTEEEEEEES-SSSCEEEEEEETTSC--CC
T ss_pred EEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC---CccEEEEeCCEEEEEeec-CCCCceEEEEECCCC--Ce
Confidence 999876532 257899999999875432211 124789999 99998632 133567999999865 34
Q ss_pred EEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCCCCCc
Q 006375 166 ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNS 245 (648)
Q Consensus 166 ~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 245 (648)
+.+.... . ..++++|++|++++. +...||+++++++. .++|.... ....+.|+|++||++...+ .+
T Consensus 142 ~~lt~~~--~----~~~~~~g~~iy~t~~--g~~~Iy~~~l~g~~-~~~l~~~~--~~~~~~P~g~~iy~t~~~~---~~ 207 (302)
T 3s25_A 142 KKIKNHY--L----FTCNTSDRYFYYNNP--KNGQLYRYDTASQS-EALFYDCN--CYKPVVLDDTNVYYMDVNR---DN 207 (302)
T ss_dssp EEEESSC--C----CCSEEETTEEEEECT--TTCCEEEEETTTTE-EEEEECSC--EEEEEEEETTEEEEEEGGG---TT
T ss_pred EEEeCCC--c----eEeeEECCEEEEEeC--CCceEEEEECCCCC-EEEEeCCC--ccceeeecCCEEEEEEcCC---Cc
Confidence 4444332 1 245789999999765 56789999999876 55664321 1123669999999987652 27
Q ss_pred EEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 246 ELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
+|+++++++. ..+.++. . .+..+++.++.|++..... ...|+.++++.
T Consensus 208 ~I~~~~ldG~-~~~~Lt~-~---~~~~~~~~g~~Iy~~~~~~-~~~i~~~~~DG 255 (302)
T 3s25_A 208 AIVHVNINNP-NPVVLTE-A---NIEHYNVYGSLIFYQRGGD-NPALCVVKNDG 255 (302)
T ss_dssp EEEEECSSSC-CCEECSC-S---CEEEEEEETTEEEEEECSS-SCEEEEEETTS
T ss_pred EEEEEECCCC-CeEEEeC-C---CcceEEECCCEEEEEECCC-CcEEEEEECCC
Confidence 9999999873 3432432 2 2467899999986654433 37899999983
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.27 E-value=4.7e-12 Score=136.34 Aligned_cols=220 Identities=13% Similarity=0.075 Sum_probs=127.9
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCC-CCCCchhHHHH-HHCCCEEEEEccCCCC-CCChhhhhcccccCCCCc
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICN-DPAFNSSRLSL-LDRGFIFAIAQIRGGG-ELGRQWYENGKFLKKKNT 465 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~-~~~~~~~~~~l-~~~G~~v~~~~~rG~g-~~g~~~~~~~~~~~~~~~ 465 (648)
+.+.++.|+.. ..+++.|+||++|||..... ...+....... ..+|++|+.+|||.+. |++..-.... .......
T Consensus 86 l~l~v~~P~~~-~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~~-~~~~n~g 163 (522)
T 1ukc_A 86 LFINVFKPSTA-TSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQ-NGDLNAG 163 (522)
T ss_dssp CEEEEEEETTC-CTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHH-SSCTTHH
T ss_pred CEEEEEECCCC-CCCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhccc-cCCCChh
Confidence 45565677653 34467899999999854433 23344433322 2469999999999532 3332111100 0112346
Q ss_pred HhHHHHHHHHHHHcC---CCCCCeEEEEeeChhHHHHHHHHhhC----CCceeEEEecCCcccccccccCCCCCCCcccc
Q 006375 466 FTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMR----PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW 538 (648)
Q Consensus 466 ~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~----p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 538 (648)
+.|+.+|++|+.++- ..||+||.|+|+|+||.+++.++... +.+|+++|+.+|..+...... ........+
T Consensus 164 l~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~~~~--~~~~~~~~~ 241 (522)
T 1ukc_A 164 LLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVS--EMEFQFERF 241 (522)
T ss_dssp HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCSG--GGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcCCHH--HHHHHHHHH
Confidence 899999999998762 36999999999999999888777653 568999999999754321110 000000011
Q ss_pred -cccCCCCCHHHHHHHHcCCccccC---------CCCCCC-eEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEe
Q 006375 539 -EEWGDPWKEEFYFYMKSYSPVDNV---------KAQNYP-HILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKC 607 (648)
Q Consensus 539 -~~~g~~~~~~~~~~~~~~sp~~~~---------~~~~~P-~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (648)
...|.+...+..+.|++.++..-+ .....| +++..+...|..+.+.++.++.++-+..+++ +++-.
T Consensus 242 ~~~~gc~~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l~~~p~~~~~~g~~~~vp---~l~G~ 318 (522)
T 1ukc_A 242 VNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFIKVP---VLVGD 318 (522)
T ss_dssp HHHTTCTTCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTCSCCCC---EEEEE
T ss_pred HHHcCCCCHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCcccCCCHHHHHhcCCCCCCC---EEEEe
Confidence 123433222333444444332110 111111 1456778888888888888887765544443 44444
Q ss_pred cCCCCccC
Q 006375 608 ELGAGHFS 615 (648)
Q Consensus 608 ~~~~gH~~ 615 (648)
..++||..
T Consensus 319 ~~~Eg~~f 326 (522)
T 1ukc_A 319 DTDEGSNF 326 (522)
T ss_dssp ETBGGGGT
T ss_pred ecchhHHh
Confidence 44667754
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-09 Score=122.49 Aligned_cols=252 Identities=9% Similarity=0.042 Sum_probs=160.7
Q ss_pred EeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc-----cC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 87 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-----VG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 87 ~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~-----~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.++++|.++.|.....|.+...+|..+.++++.+.... .+ ....++||||| .|+|+......+...|+.+++
T Consensus 83 ~p~~~g~~~y~~~~~~~~~~~~~~r~~~~~~~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl 162 (693)
T 3iuj_A 83 APFREGRYHYFFKNDGLQNQNVLWRQQEGKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDV 162 (693)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEECTTSCCEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEET
T ss_pred CCEEECCEEEEEEEcCCCceeEEEEeCCCCCcEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEEC
Confidence 44689999999988777666677777665555432111 11 24568999999 999998866666788999999
Q ss_pred CCCCCCcEEE-EeecCCCeEEEEEeCCCCcEEEEEEccc----------cccEEEEEECCCCC-ceeEeeeccc-----c
Q 006375 159 EADQSNDICL-YHEKDDIYSLGLQASESKKFLFIASESK----------ITRFVFYLDVSKPE-ELRVLTPRVV-----G 221 (648)
Q Consensus 159 ~~~~~~~~~~-~~~~~~~~~~~~~~s~Dg~~l~~~~~~~----------~~~~l~~~dl~~~~-~~~~l~~~~~-----~ 221 (648)
.++. .... +.. .....+.|| ||+.|++.+... ...+||++++.++. +-+++..... .
T Consensus 163 ~tg~--~~~~~~~~---~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~ 236 (693)
T 3iuj_A 163 ESKQ--PLETPLKD---VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRY 236 (693)
T ss_dssp TTCS--EEEEEEEE---EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSE
T ss_pred CCCC--CCccccCC---ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEE
Confidence 9983 2221 111 112356899 999999987663 24689999998875 2345544333 1
Q ss_pred eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCC-cceeEecCCCCcccceEEEeCCEEEEEEecCC-eeEEEEEEcCC
Q 006375 222 VDTAASHRGNHFFITRRSDELFNSELLACPVDNTS-ETTVLIPHRESVKLQDIQLFIDHLAVYEREGG-LQKITTYRLPA 299 (648)
Q Consensus 222 ~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~l~v~~~~~ 299 (648)
....+||||++|++.+... ....+|++++++++. ..+.+.... +.....+...++.+++..+.++ ..+|++++++.
T Consensus 237 ~~~~~SpDg~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~ 314 (693)
T 3iuj_A 237 VGATVTEDDRFLLISAANS-TSGNRLYVKDLSQENAPLLTVQGDL-DADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAAN 314 (693)
T ss_dssp EEEEECTTSCEEEEEEESS-SSCCEEEEEETTSTTCCCEEEECSS-SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred EEEEEcCCCCEEEEEEccC-CCCcEEEEEECCCCCCceEEEeCCC-CceEEEEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 3456999999999988763 334589999997643 233244433 3223336778889988887765 46788888874
Q ss_pred CCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 300 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 300 ~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
. ....+ +.+ .|+....+ .++++++.|++....-. -++++.+++.++.
T Consensus 315 ~--~~~~~---~~l-~~~~~~~~---~~s~~g~~lv~~~~~~g-~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 315 P--GPAHW---RDL-IPERQQVL---TVHSGSGYLFAEYMVDA-TARVEQFDYEGKR 361 (693)
T ss_dssp C--CGGGC---EEE-ECCCSSCE---EEEEETTEEEEEEEETT-EEEEEEECTTSCE
T ss_pred C--Ccccc---EEE-ecCCCCEE---EEEEECCEEEEEEEECC-eeEEEEEECCCCe
Confidence 2 11100 111 22222122 44567777766665433 3468899987665
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-09 Score=126.32 Aligned_cols=242 Identities=9% Similarity=0.009 Sum_probs=143.6
Q ss_pred EEeeEEeCCCCCEEEEEEeC---CCCeEEEEEEEECCCCCeeeccccC-cc-------ceeEEecCCeEEEEEeCCC--C
Q 006375 82 SVGCFQVSPDNKLVAYAEDT---KGDEIYTVYVIDIETGTPVGKPLVG-VT-------ASVEWAGNEALVYITMDEI--L 148 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~---~G~e~~~l~v~dl~~g~~~~~~~~~-~~-------~~~~WspDg~l~y~~~~~~--~ 148 (648)
.+..++|||||++|||+... .| ..+||++|+++|+....+... .. ..++|||||.++|+..... .
T Consensus 54 ~v~~~~~SPDG~~la~~s~~~~~~~--~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~ 131 (1045)
T 1k32_A 54 VINNARFFPDGRKIAIRVMRGSSLN--TADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFS 131 (1045)
T ss_dssp EEEEEEECTTSSEEEEEEEESTTCC--EEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSST
T ss_pred cccCeEECCCCCEEEEEEeeccCCC--CCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCc
Confidence 46789999999999999875 34 679999999999865443322 23 5699999998777765321 1
Q ss_pred CCceEEEEECCCCCCCcEEEEee------------------------------------------------cCCCeEEEE
Q 006375 149 RPDKAWLHKLEADQSNDICLYHE------------------------------------------------KDDIYSLGL 180 (648)
Q Consensus 149 ~~~~l~~~~l~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~ 180 (648)
...+||.+++.++.. ..+... ........+
T Consensus 132 ~~~~l~~~~~~~g~~--~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~ 209 (1045)
T 1k32_A 132 SMTCLYRVENDGINF--VPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSP 209 (1045)
T ss_dssp TCCEEEEEEGGGTEE--EECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEE
T ss_pred ccceEEEEECCCCCe--EEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccce
Confidence 345788888765421 111000 001112245
Q ss_pred EeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee
Q 006375 181 QASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV 260 (648)
Q Consensus 181 ~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (648)
.|++| .+++.+...+...||.++++++. .+.++.........|||||++|++..+ ..|+.+++.. ....
T Consensus 210 ~~s~d--~l~~~~~~dg~~~l~~~~~~g~~-~~~l~~~~~~~~~~~SpDG~~la~~~~------~~i~~~d~~~-~~l~- 278 (1045)
T 1k32_A 210 VIVGH--RIYFITDIDGFGQIYSTDLDGKD-LRKHTSFTDYYPRHLNTDGRRILFSKG------GSIYIFNPDT-EKIE- 278 (1045)
T ss_dssp EEETT--EEEEEECTTSSCEEEEEETTSCS-CEECCCCCSSCEEEEEESSSCEEEEET------TEEEEECTTT-CCEE-
T ss_pred EEeCC--EEEEEEeccCceEEEEEeCCCCc-ceEecCCCCcceeeEcCCCCEEEEEeC------CEEEEecCCc-eEee-
Confidence 67777 56666666667899999998776 666655433334579999999988742 4688888743 2211
Q ss_pred EecCCC----------CcccceEEEe-C--CEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCC
Q 006375 261 LIPHRE----------SVKLQDIQLF-I--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSES 327 (648)
Q Consensus 261 ~~~~~~----------~~~~~~~~~~-~--~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~ 327 (648)
.+.... ...+..+.+. + ..+++.. + ..++++++. ++....++. .....+..+.+
T Consensus 279 ~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~--~~i~~~~~~--~~~~~~~~~-------~~~~~~~~~~~ 345 (1045)
T 1k32_A 279 KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--R--GQAFIQDVS--GTYVLKVPE-------PLRIRYVRRGG 345 (1045)
T ss_dssp ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--T--TEEEEECTT--SSBEEECSC-------CSCEEEEEECS
T ss_pred eeccCcccccccccccccccceeeecCCCCCEEEEEE--c--CEEEEEcCC--CCceEEccC-------CCcceEEeeeE
Confidence 111110 1124555555 4 4565554 2 367777766 332221111 11112334556
Q ss_pred cccccEEEEEEeeCCCCCEEE-EEECCCCc
Q 006375 328 VFSSRILRFHYSSLRTPPSVY-DYDMDMGI 356 (648)
Q Consensus 328 ~~~~~~l~~~~ss~~~P~~~~-~~d~~~~~ 356 (648)
+ ++..+.+... ...++ .+++.+++
T Consensus 346 s-dg~~l~~~s~----~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 346 D-TKVAFIHGTR----EGDFLGIYDYRTGK 370 (1045)
T ss_dssp S-SEEEEEEEET----TEEEEEEEETTTCC
T ss_pred c-CCCeEEEEEC----CCceEEEEECCCCC
Confidence 6 6665554332 45788 88888776
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.26 E-value=6e-11 Score=114.64 Aligned_cols=215 Identities=15% Similarity=0.071 Sum_probs=128.1
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCC--EEEEEccCCCCCC--Chhhhh-c-------ccccCCCC----cHhHH
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGF--IFAIAQIRGGGEL--GRQWYE-N-------GKFLKKKN----TFTDF 469 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~--~v~~~~~rG~g~~--g~~~~~-~-------~~~~~~~~----~~~D~ 469 (648)
.+.||++||..+.. ..|...+..|.++|+ .|+.+|+++.|.. ...+.. . +...++.. ..+++
T Consensus 6 ~~pvvliHG~~~~~--~~~~~l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~l 83 (249)
T 3fle_A 6 TTATLFLHGYGGSE--RSETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYWI 83 (249)
T ss_dssp CEEEEEECCTTCCG--GGTHHHHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHHH
T ss_pred CCcEEEECCCCCCh--hHHHHHHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHHH
Confidence 35688899955433 346777888888886 5899998876631 111100 0 00011111 24577
Q ss_pred HHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC-----ceeEEEecCCcccccccccCCCCCCCcccccccCCC
Q 006375 470 IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD-----LFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP 544 (648)
Q Consensus 470 ~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~ 544 (648)
.+++++|.++.. .+++.++||||||.++..++.++|+ .++.+|+.++..+....... +.....+...|.|
T Consensus 84 ~~~i~~l~~~~~--~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~---~~~~~~~~~~g~p 158 (249)
T 3fle_A 84 KEVLSQLKSQFG--IQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNE---NVNEIIVDKQGKP 158 (249)
T ss_dssp HHHHHHHHHTTC--CCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSS---CTTTSCBCTTCCB
T ss_pred HHHHHHHHHHhC--CCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccC---CcchhhhcccCCC
Confidence 888888877643 3699999999999999999988763 68888888766554332211 1111112233555
Q ss_pred C-CHHHHHHHHcCCccccCCCCCCCeEEEeecC------CCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC
Q 006375 545 W-KEEFYFYMKSYSPVDNVKAQNYPHILVTAGL------NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS 617 (648)
Q Consensus 545 ~-~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~------~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~ 617 (648)
. ....++.|.+. ...+.+.++| ||.++|+ .|..||...++.+...++......+.+.+.. .++.|....
T Consensus 159 ~~~~~~~~~l~~~--~~~~p~~~~~-vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~~~~~y~e~~v~g-~~a~Hs~l~ 234 (249)
T 3fle_A 159 SRMNAAYRQLLSL--YKIYCGKEIE-VLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGSTKSYQEMKFKG-AKAQHSQLH 234 (249)
T ss_dssp SSCCHHHHHTGGG--HHHHTTTTCE-EEEEEEECCSSSCBSSSSBHHHHHTHHHHSTTCSSEEEEEEEES-GGGSTGGGG
T ss_pred cccCHHHHHHHHH--HhhCCccCCe-EEEEeccCCCCCCCCCcccHHHHHHHHHHHhhCCCceEEEEEeC-CCCchhccc
Confidence 3 22333333322 2223324566 9999998 7999999888777666665544444444542 247896655
Q ss_pred chHHHHHHHHHHHHHHH
Q 006375 618 GRFERLREAAFTYTFLM 634 (648)
Q Consensus 618 ~~~~~~~~~~~~~~fl~ 634 (648)
...+..+ .+..||.
T Consensus 235 ~n~~V~~---~I~~FLw 248 (249)
T 3fle_A 235 ENKDVAN---EIIQFLW 248 (249)
T ss_dssp GCHHHHH---HHHHHHT
T ss_pred cCHHHHH---HHHHHhc
Confidence 4443332 4567763
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-11 Score=120.20 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=74.0
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||..++. ..|...+..|+ ++|.|+++|.||.|..... ....+++++.+.+..+++.- +-+
T Consensus 27 ~p~vvllHG~~~~~--~~w~~~~~~L~-~~~rvia~DlrGhG~S~~~--------~~~~~~~~~a~dl~~ll~~l--~~~ 93 (276)
T 2wj6_A 27 GPAILLLPGWCHDH--RVYKYLIQELD-ADFRVIVPNWRGHGLSPSE--------VPDFGYQEQVKDALEILDQL--GVE 93 (276)
T ss_dssp SCEEEEECCTTCCG--GGGHHHHHHHT-TTSCEEEECCTTCSSSCCC--------CCCCCHHHHHHHHHHHHHHH--TCC
T ss_pred CCeEEEECCCCCcH--HHHHHHHHHHh-cCCEEEEeCCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHh--CCC
Confidence 47899999965543 34666566665 5799999999999876421 11245666666655555442 236
Q ss_pred eEEEEeeChhHHHHHHHHhhC-CCceeEEEecCC
Q 006375 486 KLCIEGRSAGGLLIGAVLNMR-PDLFKAAVAAVP 518 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~-p~~~~a~v~~~~ 518 (648)
++.++|+||||.+++.++.++ |++++++|+..+
T Consensus 94 ~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~ 127 (276)
T 2wj6_A 94 TFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDW 127 (276)
T ss_dssp SEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESC
T ss_pred ceEEEEECHHHHHHHHHHHHhCHHhhceEEEecc
Confidence 899999999999999999999 999999998865
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.2e-11 Score=116.33 Aligned_cols=213 Identities=14% Similarity=-0.033 Sum_probs=120.2
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCE---EEEEccCCCCC-------CChhhhh---cccccCC---CCcHhHHH
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFI---FAIAQIRGGGE-------LGRQWYE---NGKFLKK---KNTFTDFI 470 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~---v~~~~~rG~g~-------~g~~~~~---~~~~~~~---~~~~~D~~ 470 (648)
|.||++||..+... .|...+..|.++|++ ++.+++++.|. .+..+.. .+..... ....+|+.
T Consensus 4 ~pvvllHG~~~~~~--~~~~l~~~L~~~~~~~~~~~~~~v~~~G~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~ 81 (254)
T 3ds8_A 4 IPIILIHGSGGNAS--SLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQATPDDWSKWLK 81 (254)
T ss_dssp CCEEEECCTTCCTT--TTHHHHHHHHHTTCCCCCEEEEEEETTTEEEEESCCCTTCSSCEEEEEESSTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCCcc--hHHHHHHHHHHhcCCCceEEEEEEcCCCeEEEEEEeccCCCCCEEEEEecCCCCCHHHHHHHHH
Confidence 45788999655433 467777888888764 44444443321 0001110 0000111 12235566
Q ss_pred HHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC-----ceeEEEecCCcccccccccCCCCCCCcccccccCCCC
Q 006375 471 ACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD-----LFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPW 545 (648)
Q Consensus 471 ~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~ 545 (648)
++++.+.++..+ +++.++||||||.++..++.++|+ .++++|+.++..+....... ... +...+.|.
T Consensus 82 ~~i~~l~~~~~~--~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~-~~~-----~~~~~~p~ 153 (254)
T 3ds8_A 82 IAMEDLKSRYGF--TQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDN-GMD-----LSFKKLPN 153 (254)
T ss_dssp HHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHH-CSC-----TTCSSCSS
T ss_pred HHHHHHHHHhCC--CceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCccccccc-ccc-----cccccCCc
Confidence 666777765323 799999999999999999999998 89999999887654332110 000 11113332
Q ss_pred CHHHHHHHHcCCccccCCCCCCCeEEEeecC------CCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCch
Q 006375 546 KEEFYFYMKSYSPVDNVKAQNYPHILVTAGL------NDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGR 619 (648)
Q Consensus 546 ~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~------~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~ 619 (648)
....+..+... ...+.+ ++| +|.++|+ +|..||+..++.+...+.......+.+.+.. .+++|......
T Consensus 154 ~~~~~~~~~~~--~~~~~~-~~~-vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~~~~~~~~~~~~g-~~a~Hs~l~~~ 228 (254)
T 3ds8_A 154 STPQMDYFIKN--QTEVSP-DLE-VLAIAGELSEDNPTDGIVPTISSLATRLFMPGSAKAYIEDIQVG-EDAVHQTLHET 228 (254)
T ss_dssp CCHHHHHHHHT--GGGSCT-TCE-EEEEEEESBTTBCBCSSSBHHHHTGGGGTSBTTBSEEEEEEEES-GGGCGGGGGGS
T ss_pred chHHHHHHHHH--HhhCCC-CcE-EEEEEecCCCCCCCCcEeeHHHHHHHHHHhhccCcceEEEEEeC-CCCchhcccCC
Confidence 22233322211 112222 555 9999999 9999999888877666654333333344442 24678665544
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 006375 620 FERLREAAFTYTFLMRAL 637 (648)
Q Consensus 620 ~~~~~~~~~~~~fl~~~l 637 (648)
.+ ....+..||.+..
T Consensus 229 ~~---v~~~i~~fL~~~~ 243 (254)
T 3ds8_A 229 PK---SIEKTYWFLEKFK 243 (254)
T ss_dssp HH---HHHHHHHHHHTCC
T ss_pred HH---HHHHHHHHHHHhc
Confidence 43 2224566776543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.3e-08 Score=99.28 Aligned_cols=243 Identities=11% Similarity=-0.001 Sum_probs=145.3
Q ss_pred eeEEeCCCCCEEEEEEeCCC--CeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 84 GCFQVSPDNKLVAYAEDTKG--DEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G--~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
..+.+||||++|+++...+. .....|+++|+++++.... ........++|+||| .++++... ...|+.+++.
T Consensus 44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~----~~~v~~~d~~ 119 (353)
T 3vgz_A 44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTV----NSAVTAIDAK 119 (353)
T ss_dssp EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETT----TTEEEEEETT
T ss_pred cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecC----CCEEEEEeCC
Confidence 46789999999966653211 1246899999999987643 222334469999999 66655432 3469999998
Q ss_pred CCCCCcEEEEeecCC--------CeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee--cccceeeeEeec
Q 006375 160 ADQSNDICLYHEKDD--------IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP--RVVGVDTAASHR 229 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~--------~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~--~~~~~~~~~s~d 229 (648)
++. ....+..... .....+.++|||+++++... .....|+++|+++++ .....+ ........++||
T Consensus 120 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~s~d 195 (353)
T 3vgz_A 120 TGE--VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI-GKESVIWVVDGGNIK-LKTAIQNTGKMSTGLALDSE 195 (353)
T ss_dssp TCC--EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE-SSSCEEEEEETTTTE-EEEEECCCCTTCCCCEEETT
T ss_pred CCe--eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec-CCCceEEEEcCCCCc-eEEEecCCCCccceEEECCC
Confidence 773 2222222211 11346789999999887542 235679999998876 333322 111233569999
Q ss_pred CCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecC-C--CCcccceEEEe--CCEEEEEEecCCeeEEEEEEcCCCCCcc
Q 006375 230 GNHFFITRRSDELFNSELLACPVDNTSETTVLIPH-R--ESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPL 304 (648)
Q Consensus 230 g~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~--~~~l~~~~~~~~~~~l~v~~~~~~g~~~ 304 (648)
|+.||+... +..|+++|+.+. ...+.++. . ....+.++.++ ++.+++... ....+.++++.. +...
T Consensus 196 g~~l~~~~~-----~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~-~~~~ 266 (353)
T 3vgz_A 196 GKRLYTTNA-----DGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDS--KAAEVLVVDTRN-GNIL 266 (353)
T ss_dssp TTEEEEECT-----TSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES--SSSEEEEEETTT-CCEE
T ss_pred CCEEEEEcC-----CCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC--CCCEEEEEECCC-CcEE
Confidence 998877644 247888998763 33223322 1 12223344554 456655443 345788888863 2211
Q ss_pred cccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 305 KSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 305 ~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
..+..+.+ ..+..+++++.+++... ....++.+|+.+++
T Consensus 267 ------~~~~~~~~----~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 267 ------AKVAAPES----LAVLFNPARNEAYVTHR---QAGKVSVIDAKSYK 305 (353)
T ss_dssp ------EEEECSSC----CCEEEETTTTEEEEEET---TTTEEEEEETTTTE
T ss_pred ------EEEEcCCC----ceEEECCCCCEEEEEEC---CCCeEEEEECCCCe
Confidence 22333222 12344567776655432 23689999998887
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-10 Score=114.05 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=76.3
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCC
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 463 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 463 (648)
.+|.++.... . +..|.||++||.++... .|......| ..+|.|+++|.||.|.....- .......
T Consensus 12 ~~~~~~~~~~-----~----g~g~~~vllHG~~~~~~--~w~~~~~~l-~~~~~vi~~Dl~G~G~s~~~~---~~~~~~~ 76 (291)
T 3qyj_A 12 TTEARINLVK-----A----GHGAPLLLLHGYPQTHV--MWHKIAPLL-ANNFTVVATDLRGYGDSSRPA---SVPHHIN 76 (291)
T ss_dssp CSSCEEEEEE-----E----CCSSEEEEECCTTCCGG--GGTTTHHHH-TTTSEEEEECCTTSTTSCCCC---CCGGGGG
T ss_pred cCCeEEEEEE-----c----CCCCeEEEECCCCCCHH--HHHHHHHHH-hCCCEEEEEcCCCCCCCCCCC---CCccccc
Confidence 4666666431 1 23467999999765443 344444454 469999999999988653221 0000011
Q ss_pred CcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 464 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 464 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
...+++.+.+..+++.- ..+++.++|+||||.++..++.++|++++++|+..+
T Consensus 77 ~~~~~~~~~~~~~~~~l--~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 129 (291)
T 3qyj_A 77 YSKRVMAQDQVEVMSKL--GYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDI 129 (291)
T ss_dssp GSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred cCHHHHHHHHHHHHHHc--CCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECC
Confidence 23444444444333331 235799999999999999999999999999988753
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-11 Score=133.05 Aligned_cols=225 Identities=16% Similarity=0.087 Sum_probs=126.0
Q ss_pred CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC-CCchh--H-HHHHH-CCCEEEEEccCCCCCCChhhhhcc
Q 006375 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNSS--R-LSLLD-RGFIFAIAQIRGGGELGRQWYENG 457 (648)
Q Consensus 383 s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~--~-~~l~~-~G~~v~~~~~rG~g~~g~~~~~~~ 457 (648)
+.|. +.+.++.|+.. ..+++.|+||++|||....... .+... + ..++. .|++|+.+|||.+. +|.-.....
T Consensus 102 sedc--l~l~v~~P~~~-~~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~-~gf~~~~~~ 177 (544)
T 1thg_A 102 NEDC--LYLNVFRPAGT-KPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGP-FGFLGGDAI 177 (544)
T ss_dssp CSCC--CEEEEEEETTC-CTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHH-HHHCCSHHH
T ss_pred CCCC--eEEEEEeCCCC-CCCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCc-ccCCCcccc
Confidence 3444 44455677654 3456789999999985443332 23221 1 11222 48999999999754 111000000
Q ss_pred -cccCCCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhC--------CCceeEEEecCCccccccc
Q 006375 458 -KFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--------PDLFKAAVAAVPFVDVLTT 525 (648)
Q Consensus 458 -~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--------p~~~~a~v~~~~~~d~~~~ 525 (648)
........+.|+.+|++|+.++ ...||+||.|+|+|+||.+++.++... +.+|+++|+.+|.......
T Consensus 178 ~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~~~~~~~ 257 (544)
T 1thg_A 178 TAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGPLPYHD 257 (544)
T ss_dssp HHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCCCCCSS
T ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEecccccccCc
Confidence 0112224689999999999876 247999999999999999998777652 4589999999985422111
Q ss_pred ccCCCCCCC-cccc-cccCCCCC---HHHHHHHHcCCccccCCCC---------CCCe-EEEeecCCCCccCCchHHHHH
Q 006375 526 MLDPTIPLT-TAEW-EEWGDPWK---EEFYFYMKSYSPVDNVKAQ---------NYPH-ILVTAGLNDPRVMYSEPAKFV 590 (648)
Q Consensus 526 ~~~~~~~~~-~~~~-~~~g~~~~---~~~~~~~~~~sp~~~~~~~---------~~P~-~li~~g~~D~~v~~~~~~~~~ 590 (648)
. ....... ...+ ...|.+.. .+..+.|++.++...+... ..++ .+......|..+.+.++.++.
T Consensus 258 ~-~~~~~~~~~~~~~~~~gc~~~~~~~~~~~cLr~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~P~~Dg~~l~~~p~~~~ 336 (544)
T 1thg_A 258 S-SSVGPDISYNRFAQYAGCDTSASANDTLECLRSKSSSVLHDAQNSYDLKDLFGLLPQFLGFGPRPDGNIIPDAAYELF 336 (544)
T ss_dssp S-CCSSSSCHHHHHHHHHTCCTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHSTTTSCGGGTSCCCCCSSSSCSCHHHHH
T ss_pred C-ChHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhcCCHHHHHHhhhhcccccccccccccccceeeeCCcccCcCHHHHH
Confidence 1 1000000 0111 22354421 1344556665543221111 1110 122445567777788888887
Q ss_pred HHHHhcCCCCCeEEEEecCCCCccC
Q 006375 591 AKLREMKTDDNILLFKCELGAGHFS 615 (648)
Q Consensus 591 ~~l~~~~~~~~~~~~~~~~~~gH~~ 615 (648)
++.+..+++ +++-...+.||..
T Consensus 337 ~~g~~~~vp---~l~G~~~~Eg~~f 358 (544)
T 1thg_A 337 RSGRYAKVP---YISGNQEDEGTAF 358 (544)
T ss_dssp HTTCSCCCC---EEEEEETBTTTTT
T ss_pred hcCCCCCcc---EEEEeecCchhhh
Confidence 765554444 4444445677754
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-10 Score=114.55 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=68.6
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHH-CCCEEEEEccCCCCCCChhhhhcccccCCCCcH----hHHHHHHHHHHHcC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF----TDFIACAEYLIKNC 480 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~-~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~----~D~~~~~~~l~~~~ 480 (648)
.|.||++||+.+.. ..|......|.+ .+|.|+++|+||.|..... .....++ +|+.+.++.|.. +
T Consensus 38 ~p~lvllHG~~~~~--~~w~~~~~~L~~~~~~~via~Dl~GhG~S~~~-------~~~~~~~~~~a~dl~~~l~~l~~-~ 107 (316)
T 3c5v_A 38 GPVLLLLHGGGHSA--LSWAVFTAAIISRVQCRIVALDLRSHGETKVK-------NPEDLSAETMAKDVGNVVEAMYG-D 107 (316)
T ss_dssp SCEEEEECCTTCCG--GGGHHHHHHHHTTBCCEEEEECCTTSTTCBCS-------CTTCCCHHHHHHHHHHHHHHHHT-T
T ss_pred CcEEEEECCCCccc--ccHHHHHHHHhhcCCeEEEEecCCCCCCCCCC-------CccccCHHHHHHHHHHHHHHHhc-c
Confidence 47899999965433 346665666665 2899999999999875321 0111233 445555555432 1
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHhh--CCCceeEEEecCC
Q 006375 481 YCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVP 518 (648)
Q Consensus 481 ~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~~~a~v~~~~ 518 (648)
. ++++.++||||||.+++.++.+ +|+ ++++|+..+
T Consensus 108 -~-~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~ 144 (316)
T 3c5v_A 108 -L-PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDV 144 (316)
T ss_dssp -C-CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESC
T ss_pred -C-CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEcc
Confidence 1 2689999999999999999985 577 888888765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-08 Score=102.35 Aligned_cols=248 Identities=11% Similarity=0.081 Sum_probs=136.1
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCe-eec-cccCccce-eEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGK-PLVGVTAS-VEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~-~~~-~~~~~~~~-~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
.+.|||||++|+++....+ .|+++|+++++. ... ........ ++|+||| .++ +... .+....|+.+++.+
T Consensus 44 ~~~~s~dg~~l~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~-~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQ----TLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV-TVTG-LNHPFNMQSYSFLK 117 (331)
T ss_dssp EEEECSSSCEEEEEESTTC----EEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE-ECCC-SSSSCEEEEEETTT
T ss_pred eEEEcCCCCEEEEEeCCCC----eEEEEECCCCceeEEecccCCCCccceEECCCCCEEE-EecC-CCCcccEEEEECCC
Confidence 7899999998877665333 899999999886 322 22222334 8999999 565 4332 22223799999987
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCcee-----EeeecccceeeeEeecCCEEEE
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR-----VLTPRVVGVDTAASHRGNHFFI 235 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~-----~l~~~~~~~~~~~s~dg~~l~~ 235 (648)
+. ....+... .....+.|+|||++|++..... ...|++++++...... .+..........|+|||+++|+
T Consensus 118 ~~--~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~-~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 118 NK--FISTIPIP--YDAVGIAISPNGNGLILIDRSS-ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp TE--EEEEEECC--TTEEEEEECTTSSCEEEEEETT-TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred CC--eEEEEECC--CCccceEECCCCCEEEEEecCC-CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence 62 22233222 2234788999999887654432 2335655555432121 1111111233569999998887
Q ss_pred EeccCCCCCcEEEEEeCCCCCcc--eeEecCCCCcccceEEEeCC--EEEEEEecCCeeEEEEEEcCCCCCcccccCC-C
Q 006375 236 TRRSDELFNSELLACPVDNTSET--TVLIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPAVGEPLKSLQG-G 310 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~-~ 310 (648)
.... ...|.++|+++.... ...++... .+..+.+.++ .+++. ..+...+.++++.. +.+..+.. .
T Consensus 193 ~~~~----~~~v~v~d~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~--~~~~~~i~~~d~~~--~~~~~~~~~~ 262 (331)
T 3u4y_A 193 ANLI----GNSIGILETQNPENITLLNAVGTNN--LPGTIVVSRDGSTVYVL--TESTVDVFNFNQLS--GTLSFVKSFG 262 (331)
T ss_dssp EETT----TTEEEEEECSSTTSCEEEEEEECSS--CCCCEEECTTSSEEEEE--CSSEEEEEEEETTT--TEEEEEEEEE
T ss_pred EeCC----CCeEEEEECCCCcccceeeeccCCC--CCceEEECCCCCEEEEE--EcCCCEEEEEECCC--Cceeeecccc
Confidence 7654 247888888764331 22344332 3445555554 44443 33556788888763 32211100 0
Q ss_pred ceeec-CCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 311 KSVEF-IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 311 ~~i~~-~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
..+.+ +.+......+.+++++..+++... .-..+..+|+.+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 263 HGLLIDPRPLFGANQMALNKTETKLFISAN---ISRELKVFTISGKV 306 (331)
T ss_dssp CCCCCCCGGGTTCCCEEECTTSSEEEEEET---TTTEEEEEETTSCE
T ss_pred cccccCCCCcccccceEECCCCCEEEEecC---CCCcEEEEEecCCc
Confidence 00000 111101112355677776655432 23568888887654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-08 Score=103.24 Aligned_cols=225 Identities=12% Similarity=0.082 Sum_probs=133.8
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccC----------ccceeEEecCC-eEEEEEeCCCCCCc
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG----------VTASVEWAGNE-ALVYITMDEILRPD 151 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~----------~~~~~~WspDg-~l~y~~~~~~~~~~ 151 (648)
..+.|||||++++++....+ .|+++|+++++.+.. .... ....++|+||| .+++.... ...
T Consensus 92 ~~~~~s~dg~~l~v~~~~~~----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~ 164 (353)
T 3vgz_A 92 FGATINNTTQTLWFGNTVNS----AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG---KES 164 (353)
T ss_dssp CSEEEETTTTEEEEEETTTT----EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES---SSC
T ss_pred ceEEECCCCCEEEEEecCCC----EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC---CCc
Confidence 46789999998877765444 799999999987532 2211 02458999999 66655432 235
Q ss_pred eEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeE-eeeccc---c--eeee
Q 006375 152 KAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV-LTPRVV---G--VDTA 225 (648)
Q Consensus 152 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~-l~~~~~---~--~~~~ 225 (648)
.|+.+++.++ +....+... ......+.++|||++|++... ...|+++|+.+++ ... +..... . ....
T Consensus 165 ~i~~~d~~~~--~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~ 237 (353)
T 3vgz_A 165 VIWVVDGGNI--KLKTAIQNT-GKMSTGLALDSEGKRLYTTNA---DGELITIDTADNK-ILSRKKLLDDGKEHFFINIS 237 (353)
T ss_dssp EEEEEETTTT--EEEEEECCC-CTTCCCCEEETTTTEEEEECT---TSEEEEEETTTTE-EEEEEECCCSSSCCCEEEEE
T ss_pred eEEEEcCCCC--ceEEEecCC-CCccceEEECCCCCEEEEEcC---CCeEEEEECCCCe-EEEEEEcCCCCCCcccceEE
Confidence 6999998876 222223211 122235679999999887643 4689999999876 322 221111 1 1246
Q ss_pred EeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCccc
Q 006375 226 ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLK 305 (648)
Q Consensus 226 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~ 305 (648)
++|+|+.||+.... ...|+++|..+.... ..++.... .-..++++++.+++....+ ..+.++++.. +..+
T Consensus 238 ~s~dg~~l~~~~~~----~~~v~~~d~~~~~~~-~~~~~~~~-~~~~~s~dg~~l~v~~~~~--~~v~~~d~~~-~~~~- 307 (353)
T 3vgz_A 238 LDTARQRAFITDSK----AAEVLVVDTRNGNIL-AKVAAPES-LAVLFNPARNEAYVTHRQA--GKVSVIDAKS-YKVV- 307 (353)
T ss_dssp EETTTTEEEEEESS----SSEEEEEETTTCCEE-EEEECSSC-CCEEEETTTTEEEEEETTT--TEEEEEETTT-TEEE-
T ss_pred ECCCCCEEEEEeCC----CCEEEEEECCCCcEE-EEEEcCCC-ceEEECCCCCEEEEEECCC--CeEEEEECCC-CeEE-
Confidence 99999988766532 257999998763322 23332222 1223444555666655433 4688888763 2211
Q ss_pred ccCCCceeecCCCeeeeeCCCCcccccEEEEEEee
Q 006375 306 SLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSS 340 (648)
Q Consensus 306 ~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss 340 (648)
..+..+. ....+.++++++.++++..+
T Consensus 308 -----~~~~~~~---~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 308 -----KTFDTPT---HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -----EEEECCS---EEEEEEECTTSCEEEEEEEC
T ss_pred -----EEEecCC---CCCeEEEcCCCCEEEEEEcc
Confidence 1222222 12334556788877777665
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.4e-11 Score=129.49 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=91.3
Q ss_pred CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCC-CchhHHHHHH-CCCEEEEEccC-CCCCCChhhhhcccc
Q 006375 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-FNSSRLSLLD-RGFIFAIAQIR-GGGELGRQWYENGKF 459 (648)
Q Consensus 383 s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~-~G~~v~~~~~r-G~g~~g~~~~~~~~~ 459 (648)
+.|. +.+.++.|+.. ..+++.|+||++|||........ +.. ..|+. +|++|+.+||| |..+++..... .
T Consensus 95 ~edc--l~lnv~~P~~~-~~~~~~Pv~v~iHGG~~~~g~~~~~~~--~~la~~~g~vvv~~nYRlg~~gf~~~~~~---~ 166 (542)
T 2h7c_A 95 SEDC--LYLNIYTPADL-TKKNRLPVMVWIHGGGLMVGAASTYDG--LALAAHENVVVVTIQYRLGIWGFFSTGDE---H 166 (542)
T ss_dssp ESCC--CEEEEEECSCT-TSCCCEEEEEEECCSTTTSCCSTTSCC--HHHHHHHTCEEEEECCCCHHHHHCCCSST---T
T ss_pred CCCC--cEEEEEECCCC-CCCCCCCEEEEECCCcccCCCccccCH--HHHHhcCCEEEEecCCCCccccCCCCCcc---c
Confidence 3454 34455677654 33467899999999854433322 333 34554 69999999999 33233221111 1
Q ss_pred cCCCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhh--CCCceeEEEecCCcccc
Q 006375 460 LKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPFVDV 522 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~~~a~v~~~~~~d~ 522 (648)
......+.|+.++++|+.++ ...||+||.|+|+|+||.+++.++.. .+.+|+++|+.+|..+.
T Consensus 167 ~~~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~~ 234 (542)
T 2h7c_A 167 SRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVALT 234 (542)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTC
T ss_pred CccchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCccC
Confidence 12224578999999999875 34799999999999999999988876 35699999999997653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-08 Score=116.24 Aligned_cols=244 Identities=11% Similarity=0.002 Sum_probs=150.4
Q ss_pred CCCCCEEEEEEeCCCCeEEEEEEEEC---CCC--C-ee-ecc--c-c--C--ccceeEEe-cCC-eEEEEEeCCCCCCce
Q 006375 89 SPDNKLVAYAEDTKGDEIYTVYVIDI---ETG--T-PV-GKP--L-V--G--VTASVEWA-GNE-ALVYITMDEILRPDK 152 (648)
Q Consensus 89 SPDG~~la~~~~~~G~e~~~l~v~dl---~~g--~-~~-~~~--~-~--~--~~~~~~Ws-pDg-~l~y~~~~~~~~~~~ 152 (648)
.|+|.++.|+....|.+...++.++. .++ . .+ .+. . . + ..+.++|| ||| .|+|+.........+
T Consensus 123 ~~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~ 202 (751)
T 2xe4_A 123 YVYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYT 202 (751)
T ss_dssp EEETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEE
T ss_pred eEECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEE
Confidence 37999999999888876677888886 443 2 22 221 1 1 1 23568999 999 999998865555678
Q ss_pred EEEEECCCC-CCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcccc--ccEEEEEECCCCC-ceeEeeecc-c--ceeee
Q 006375 153 AWLHKLEAD-QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI--TRFVFYLDVSKPE-ELRVLTPRV-V--GVDTA 225 (648)
Q Consensus 153 l~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~--~~~l~~~dl~~~~-~~~~l~~~~-~--~~~~~ 225 (648)
||+.++.++ ......+ .. ...++.|||||+.|++...... ..+||++++.++. .-+.+.... . .....
T Consensus 203 l~v~dl~~g~~~l~~~~-~~----~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 277 (751)
T 2xe4_A 203 IEFKRISDPSQTIADKV-SG----TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMY 277 (751)
T ss_dssp EEEEETTCTTCCCCCCE-EE----ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEE
T ss_pred EEEEECCCCCEeCCccc-cC----ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEE
Confidence 999999887 4211111 11 1235789999999999875432 2589999998875 223443221 1 23346
Q ss_pred EeecCCEEEEEeccCCCCCcEEEEEeCCCCC-cc--eeEecCCCCcccceEEEe---CCEEEEEEecC--CeeEEEEEEc
Q 006375 226 ASHRGNHFFITRRSDELFNSELLACPVDNTS-ET--TVLIPHRESVKLQDIQLF---IDHLAVYEREG--GLQKITTYRL 297 (648)
Q Consensus 226 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~--~~~~l~v~~~ 297 (648)
|||||++|++.++.. ...+|+++|++++. .. +.+++.... ..++++ ++.+++..+.+ +..+|+++++
T Consensus 278 ~SpDg~~l~~~~~~~--~~~~l~~~d~~~~~~~~~~~~l~~~~~~---~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~ 352 (751)
T 2xe4_A 278 KAADTNTLCIGSQSP--ETAEVHLLDLRKGNAHNTLEIVRPREKG---VRYDVQMHGTSHLVILTNEGGAVNHKLLIAPR 352 (751)
T ss_dssp ECTTSSEEEEEEECS--SCEEEEEEESSSCTTCCCEEESSCCCTT---CCEEEEEETTTEEEEEECTTTCTTCEEEEEET
T ss_pred ECCCCCEEEEEecCC--CCceEEEEECCCCCCCceeEEeecCCCC---ceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcC
Confidence 999999999998752 46799999998642 23 324333222 224444 78888888775 5568888887
Q ss_pred CCCCCcccccCCCce-eecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEEC
Q 006375 298 PAVGEPLKSLQGGKS-VEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDM 352 (648)
Q Consensus 298 ~~~g~~~~~l~~~~~-i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~ 352 (648)
+.. +..+ . +........+.++ +..++.+++.... ....+++.+++
T Consensus 353 ~~~-~~~~------~~li~~~~~~~l~~~--~~~~~~lv~~~~~-~g~~~l~~~dl 398 (751)
T 2xe4_A 353 GQP-SDWS------HVLVDHSEDVFMESI--AVRSNYLVVAGRR-AGLTRIWTMMA 398 (751)
T ss_dssp TST-TCCC------CEEECCCSSEEEEEE--EECSSEEEEEEEE-TTEEEEEEEEC
T ss_pred CCc-ccce------eeEECCCCCcEEEEE--EEECCEEEEEEEe-CCEEEEEEEec
Confidence 631 2111 1 1111111123222 2335556655543 34567888886
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-08 Score=102.56 Aligned_cols=241 Identities=12% Similarity=0.057 Sum_probs=139.6
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccC------ccceeEEecCC-eEEEEEeC----CCC--
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG------VTASVEWAGNE-ALVYITMD----EIL-- 148 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~------~~~~~~WspDg-~l~y~~~~----~~~-- 148 (648)
...+.|||||++|+++....+ .|+++|+++++.+.. .... ....++|+||| .+++.... ...
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSE----SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTT----EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ccceEEcCCCCEEEEEeCCCC----eEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccc
Confidence 346899999999887765444 799999999987632 2221 33459999999 77665421 001
Q ss_pred -CCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccceeeeE
Q 006375 149 -RPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGVDTAA 226 (648)
Q Consensus 149 -~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~~~~~~ 226 (648)
....|+++++.++ +....+... .....+.|+|||++|++. ...|+++|+++++ .....+ ........+
T Consensus 112 ~~~~~i~v~d~~~~--~~~~~~~~~--~~~~~~~~s~dg~~l~~~-----~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~ 181 (337)
T 1pby_B 112 VQPTRVALYDAETL--SRRKAFEAP--RQITMLAWARDGSKLYGL-----GRDLHVMDPEAGT-LVEDKPIQSWEAETYA 181 (337)
T ss_dssp ECCCEEEEEETTTT--EEEEEEECC--SSCCCEEECTTSSCEEEE-----SSSEEEEETTTTE-EEEEECSTTTTTTTBC
T ss_pred ccCceEEEEECCCC--cEEEEEeCC--CCcceeEECCCCCEEEEe-----CCeEEEEECCCCc-EeeeeeccccCCCcee
Confidence 2467999998775 222223222 122356799999998876 2569999998876 332222 211122358
Q ss_pred eecCCEEEEEeccCCC-------------------CCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEe
Q 006375 227 SHRGNHFFITRRSDEL-------------------FNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYER 285 (648)
Q Consensus 227 s~dg~~l~~~~~~~~~-------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~ 285 (648)
+|||+.|++.....+. ....|+++|+.+......-+... ...+.++.+.+ +.+++.
T Consensus 182 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-- 258 (337)
T 1pby_B 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM-DVFYFSTAVNPAKTRAFGA-- 258 (337)
T ss_dssp CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECTTSSEEEEE--
T ss_pred CCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC-CCceeeEEECCCCCEEEEe--
Confidence 8999877655432110 01167888887633221111111 11233455554 455544
Q ss_pred cCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 286 EGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 286 ~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
...+.++++.. +... ..+..+.. +..+.++++++.+++. + ....++.+|+.+++.
T Consensus 259 ---~~~v~~~d~~~--~~~~-----~~~~~~~~---~~~~~~s~dg~~l~~~--~--~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 259 ---YNVLESFDLEK--NASI-----KRVPLPHS---YYSVNVSTDGSTVWLG--G--ALGDLAAYDAETLEK 313 (337)
T ss_dssp ---ESEEEEEETTT--TEEE-----EEEECSSC---CCEEEECTTSCEEEEE--S--BSSEEEEEETTTCCE
T ss_pred ---CCeEEEEECCC--CcCc-----ceecCCCc---eeeEEECCCCCEEEEE--c--CCCcEEEEECcCCcE
Confidence 25788888873 2211 12222221 2224456677766553 2 257899999999873
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-11 Score=131.09 Aligned_cols=216 Identities=17% Similarity=0.140 Sum_probs=121.5
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCC-Cchh--H-HHHH-HCCCEEEEEccCCCC-CC--Chhhhhccccc
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-FNSS--R-LSLL-DRGFIFAIAQIRGGG-EL--GRQWYENGKFL 460 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~-~~~~--~-~~l~-~~G~~v~~~~~rG~g-~~--g~~~~~~~~~~ 460 (648)
+.+.++.|+.. ..+++.|+||++|||........ +... + ..++ ..|++|+.+|||.+. ++ +.+... ..
T Consensus 98 l~l~v~~P~~~-~~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~~~~~~---~~ 173 (534)
T 1llf_A 98 LTINVVRPPGT-KAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKA---EG 173 (534)
T ss_dssp CEEEEEECTTC-CTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH---HT
T ss_pred eEEEEEECCCC-CCCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCCCCCCCcccccc---cC
Confidence 44555677653 34567899999999854433322 3321 1 1122 258999999999753 11 111111 11
Q ss_pred CCCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhC--------CCceeEEEecCCcccccccccCC
Q 006375 461 KKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--------PDLFKAAVAAVPFVDVLTTMLDP 529 (648)
Q Consensus 461 ~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--------p~~~~a~v~~~~~~d~~~~~~~~ 529 (648)
.....+.|+.+|++|+.++ ...||+||.|+|+|+||.+++.++... +.+|+++|+.+|........
T Consensus 174 ~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~~~~~~~~--- 250 (534)
T 1llf_A 174 SGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGAMVPSDPV--- 250 (534)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCCSCCCCCT---
T ss_pred CCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccCcccCCCc---
Confidence 2234689999999999875 236999999999999999888776653 45899999999843211110
Q ss_pred CCCCCcccc----cccCCCCCHHHHHHHHcCCccccCCCC-C------C-CeEEEeecCCCCccCCchHHHHHHHHHhcC
Q 006375 530 TIPLTTAEW----EEWGDPWKEEFYFYMKSYSPVDNVKAQ-N------Y-PHILVTAGLNDPRVMYSEPAKFVAKLREMK 597 (648)
Q Consensus 530 ~~~~~~~~~----~~~g~~~~~~~~~~~~~~sp~~~~~~~-~------~-P~~li~~g~~D~~v~~~~~~~~~~~l~~~~ 597 (648)
........+ ...|.+...+..+.|++.++...+... . + +..+......|..+.+.++.++.++.+..+
T Consensus 251 ~~~~~~~~~~~~~~~~gc~~~~~~l~cLr~~~~~~l~~a~~~~~~~~~~~~~~~~f~P~~Dg~~l~~~p~~~~~~g~~~~ 330 (534)
T 1llf_A 251 DGTYGNEIYDLFVSSAGCGSASDKLACLRSASSDTLLDATNNTPGFLAYSSLRLSYLPRPDGKNITDDMYKLVRDGKYAS 330 (534)
T ss_dssp TSHHHHHHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHHHTSCCTTSTTTTSCSSCCCCCSSSSCSCHHHHHHTTCSCC
T ss_pred ChHHHHHHHHHHHHHhCCCCcHHHHHHHHcCCHHHHHHHHHhcccccccccccccceeecCCccccCCHHHHHHcCCCCC
Confidence 000000011 223544322344455555442211110 0 0 001223445577777788887776554444
Q ss_pred CCCCeEEEEecCCCCcc
Q 006375 598 TDDNILLFKCELGAGHF 614 (648)
Q Consensus 598 ~~~~~~~~~~~~~~gH~ 614 (648)
++ +++-...++||.
T Consensus 331 vp---~l~G~~~~Eg~~ 344 (534)
T 1llf_A 331 VP---VIIGDQNDEGTI 344 (534)
T ss_dssp CC---EEEEEETBTTHH
T ss_pred CC---EEEEEecCchhh
Confidence 43 444444466774
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.6e-08 Score=97.33 Aligned_cols=244 Identities=11% Similarity=0.028 Sum_probs=133.7
Q ss_pred EEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCC
Q 006375 86 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQS 163 (648)
Q Consensus 86 ~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~ 163 (648)
..++++++++..+...++ +|.++|+++++.... ........++|+||| .++++... ...|+.+++.++..
T Consensus 3 ~~~~~~~~~~~v~~~~~~----~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLR----RISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDF----CQTLVQIETQLEPP 74 (331)
T ss_dssp ----CCCCEEEEEEGGGT----EEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEEST----TCEEEEEECSSSSC
T ss_pred eeEcCCCCEEEEEecCCC----eEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCC----CCeEEEEECCCCce
Confidence 456788887665554433 899999999987643 222221269999999 56555432 23799999988732
Q ss_pred CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccc-cccEEEEEECCCCCceeEeeec-ccceeeeEeecCCEEEEEeccCC
Q 006375 164 NDICLYHEKDDIYSLGLQASESKKFLFIASESK-ITRFVFYLDVSKPEELRVLTPR-VVGVDTAASHRGNHFFITRRSDE 241 (648)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~-~~~~l~~~dl~~~~~~~~l~~~-~~~~~~~~s~dg~~l~~~~~~~~ 241 (648)
. ......... ....+.++|||++|+ .+... ....|+++|+++++ .....+. .......|+|||++||+....+
T Consensus 75 ~-~~~~~~~~~-~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~- 149 (331)
T 3u4y_A 75 K-VVAIQEGQS-SMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNK-FISTIPIPYDAVGIAISPNGNGLILIDRSS- 149 (331)
T ss_dssp E-EEEEEECSS-CCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTE-EEEEEECCTTEEEEEECTTSSCEEEEEETT-
T ss_pred e-EEecccCCC-CccceEECCCCCEEE-EecCCCCcccEEEEECCCCC-eEEEEECCCCccceEECCCCCEEEEEecCC-
Confidence 1 222332221 121268999999998 33322 22389999998876 3333222 2223456999999887765542
Q ss_pred CCCcEEEEEeCCCCCcc----eeEecCCCCcccceEEEeCC--EEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeec
Q 006375 242 LFNSELLACPVDNTSET----TVLIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEF 315 (648)
Q Consensus 242 ~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~ 315 (648)
.. .|.+++++..+.. ...++... ....+.+.++ .+++.... ...+.++++.. +.....+ ..+.
T Consensus 150 -~~-~i~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~--~~~v~v~d~~~-~~~~~~~---~~~~- 218 (331)
T 3u4y_A 150 -AN-TVRRFKIDADGVLFDTGQEFISGGT--RPFNITFTPDGNFAFVANLI--GNSIGILETQN-PENITLL---NAVG- 218 (331)
T ss_dssp -TT-EEEEEEECTTCCEEEEEEEEECSSS--SEEEEEECTTSSEEEEEETT--TTEEEEEECSS-TTSCEEE---EEEE-
T ss_pred -Cc-eEEEEEECCCCcEeecCCccccCCC--CccceEECCCCCEEEEEeCC--CCeEEEEECCC-Cccccee---eecc-
Confidence 22 1444444321211 11333322 2455555554 55555433 34688888873 2210000 1122
Q ss_pred CCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEE
Q 006375 316 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV 358 (648)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 358 (648)
.. .....+.+++++..+++... ....++.+|+.+++.+
T Consensus 219 -~~-~~~~~~~~spdg~~l~v~~~---~~~~i~~~d~~~~~~~ 256 (331)
T 3u4y_A 219 -TN-NLPGTIVVSRDGSTVYVLTE---STVDVFNFNQLSGTLS 256 (331)
T ss_dssp -CS-SCCCCEEECTTSSEEEEECS---SEEEEEEEETTTTEEE
T ss_pred -CC-CCCceEEECCCCCEEEEEEc---CCCEEEEEECCCCcee
Confidence 11 12233456678886655432 3456999999998853
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-10 Score=109.92 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=63.6
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc-CCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN-CYC 482 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~ 482 (648)
++.|.||++||..+... .|......|. .+|.|+.+|.||.|.... ...+|+.+.++.+.+. +..
T Consensus 11 ~~~~~lv~lhg~g~~~~--~~~~~~~~L~-~~~~vi~~Dl~GhG~S~~------------~~~~~~~~~~~~~~~~l~~~ 75 (242)
T 2k2q_B 11 SEKTQLICFPFAGGYSA--SFRPLHAFLQ-GECEMLAAEPPGHGTNQT------------SAIEDLEELTDLYKQELNLR 75 (242)
T ss_dssp TCCCEEESSCCCCHHHH--HHHHHHHHHC-CSCCCEEEECCSSCCSCC------------CTTTHHHHHHHHTTTTCCCC
T ss_pred CCCceEEEECCCCCCHH--HHHHHHHhCC-CCeEEEEEeCCCCCCCCC------------CCcCCHHHHHHHHHHHHHhh
Confidence 34578999999765432 3454444544 579999999999886532 1235777777766543 221
Q ss_pred CCCeEEEEeeChhHHHHHHHHhh------CCCce
Q 006375 483 TKEKLCIEGRSAGGLLIGAVLNM------RPDLF 510 (648)
Q Consensus 483 d~~~i~i~G~S~GG~l~~~~~~~------~p~~~ 510 (648)
..+++.++||||||.++..++.+ +|+.+
T Consensus 76 ~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v 109 (242)
T 2k2q_B 76 PDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAV 109 (242)
T ss_dssp CCSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSE
T ss_pred cCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEE
Confidence 23689999999999999988876 57753
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-09 Score=112.85 Aligned_cols=119 Identities=12% Similarity=0.026 Sum_probs=84.2
Q ss_pred CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHH------CCCEEEEEccCCCCCCChhhhhccc
Q 006375 385 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLD------RGFIFAIAQIRGGGELGRQWYENGK 458 (648)
Q Consensus 385 ~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~------~G~~v~~~~~rG~g~~g~~~~~~~~ 458 (648)
+|.+|......++. ...|.||++||.+++.. .|...+..|.+ .||.|+++|.||.|.....-
T Consensus 93 ~g~~i~~~~~~~~~-----~~~~pllllHG~~~s~~--~~~~~~~~L~~~~~~~~~gf~vv~~DlpG~G~S~~~~----- 160 (408)
T 3g02_A 93 EGLTIHFAALFSER-----EDAVPIALLHGWPGSFV--EFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGPP----- 160 (408)
T ss_dssp TTEEEEEEEECCSC-----TTCEEEEEECCSSCCGG--GGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCSC-----
T ss_pred CCEEEEEEEecCCC-----CCCCeEEEECCCCCcHH--HHHHHHHHHhcccccccCceEEEEECCCCCCCCCCCC-----
Confidence 88888876443221 23577999999776543 36666677777 58999999999988654321
Q ss_pred ccCCCCcHhHHHHHHHHHHHcCCCCCC-eEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 459 FLKKKNTFTDFIACAEYLIKNCYCTKE-KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 459 ~~~~~~~~~D~~~~~~~l~~~~~~d~~-~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
......++++.+.+..|++.- ..+ ++.++|+|+||.++..++.++|+++..++...+
T Consensus 161 -~~~~~~~~~~a~~~~~l~~~l--g~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~ 218 (408)
T 3g02_A 161 -LDKDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCN 218 (408)
T ss_dssp -SSSCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred -CCCCCCHHHHHHHHHHHHHHh--CCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCC
Confidence 122356778877777776652 234 899999999999999999999886666555443
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.2e-10 Score=108.05 Aligned_cols=200 Identities=13% Similarity=0.085 Sum_probs=116.6
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCC---CEEEEEccCCCCC--CChhhhh--------cccccCC------CCcHh
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRG---FIFAIAQIRGGGE--LGRQWYE--------NGKFLKK------KNTFT 467 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G---~~v~~~~~rG~g~--~g~~~~~--------~~~~~~~------~~~~~ 467 (648)
+.||++||..++. ..|...+..|.++| +.|+.+++++.|. +...+.. -+...++ ....+
T Consensus 5 ~pvv~iHG~~~~~--~~~~~~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~a~ 82 (250)
T 3lp5_A 5 APVIMVPGSSASQ--NRFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQAV 82 (250)
T ss_dssp CCEEEECCCGGGH--HHHHHHHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHHHHHHH
T ss_pred CCEEEECCCCCCH--HHHHHHHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCHHHHHH
Confidence 4577799965543 34666677888876 6788888776553 1111100 0000111 01237
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC-----CCceeEEEecCCcccccccccCCCCCCCcccccccC
Q 006375 468 DFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR-----PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWG 542 (648)
Q Consensus 468 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-----p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g 542 (648)
++.+++++|.++.. ..++.++||||||.++..++.++ |+.++.+|+..+..+.... . +
T Consensus 83 ~l~~~~~~l~~~~~--~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~----~-~---------- 145 (250)
T 3lp5_A 83 WLNTAFKALVKTYH--FNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMEST----S-T---------- 145 (250)
T ss_dssp HHHHHHHHHHTTSC--CSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCC----C-S----------
T ss_pred HHHHHHHHHHHHcC--CCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCcccc----c-c----------
Confidence 77888888877643 37899999999999999988876 6678888887765543211 0 0
Q ss_pred CCCCHHHHHHHHcCCccccCCCCCCCeEEEeecC----CCCccCCchHHHHHHHHHhcCCCCCeEEEEec-CCCCccCCC
Q 006375 543 DPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGL----NDPRVMYSEPAKFVAKLREMKTDDNILLFKCE-LGAGHFSKS 617 (648)
Q Consensus 543 ~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~----~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~gH~~~~ 617 (648)
......++.+.... ..+.+ ++| +|+++|+ .|..||...++.+...++..... ...+... .+++|....
T Consensus 146 -~~~~~~~~~l~~~~--~~lp~-~vp-vl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~~~~~~--~~~~~v~g~~a~H~~l~ 218 (250)
T 3lp5_A 146 -TAKTSMFKELYRYR--TGLPE-SLT-VYSIAGTENYTSDGTVPYNSVNYGKYIFQDQVKH--FTEITVTGANTAHSDLP 218 (250)
T ss_dssp -SCCCHHHHHHHHTG--GGSCT-TCE-EEEEECCCCCCTTTBCCHHHHTTHHHHHTTTSSE--EEEEECTTTTBSSCCHH
T ss_pred -cccCHHHHHHHhcc--ccCCC-Cce-EEEEEecCCCCCCceeeHHHHHHHHHHhcccccc--eEEEEEeCCCCchhcch
Confidence 01112223333221 12222 566 9999999 99999988777666665543222 2233322 356797644
Q ss_pred chHHHHHHHHHHHHHHHH
Q 006375 618 GRFERLREAAFTYTFLMR 635 (648)
Q Consensus 618 ~~~~~~~~~~~~~~fl~~ 635 (648)
...+ ....+.+||.+
T Consensus 219 e~~~---v~~~I~~FL~~ 233 (250)
T 3lp5_A 219 QNKQ---IVSLIRQYLLA 233 (250)
T ss_dssp HHHH---HHHHHHHHTSC
T ss_pred hCHH---HHHHHHHHHhc
Confidence 4332 23345677753
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-10 Score=113.52 Aligned_cols=206 Identities=12% Similarity=0.095 Sum_probs=114.6
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHH-HHHHcCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAE-YLIKNCYC 482 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~ 482 (648)
+..|.||++||..+......|......|. .+|.|+.+|+||.|.... ...+++++.+.+. .+.+. .
T Consensus 65 ~~~~~lvllhG~~~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~----------~~~~~~~~a~~~~~~l~~~--~ 131 (300)
T 1kez_A 65 PGEVTVICCAGTAAISGPHEFTRLAGALR-GIAPVRAVPQPGYEEGEP----------LPSSMAAVAAVQADAVIRT--Q 131 (300)
T ss_dssp SCSSEEEECCCSSTTCSTTTTHHHHHHTS-SSCCBCCCCCTTSSTTCC----------BCSSHHHHHHHHHHHHHHH--C
T ss_pred CCCCeEEEECCCcccCcHHHHHHHHHhcC-CCceEEEecCCCCCCCCC----------CCCCHHHHHHHHHHHHHHh--c
Confidence 45689999999765442234555444443 579999999999876321 1235566665544 45443 2
Q ss_pred CCCeEEEEeeChhHHHHHHHHhhCC---CceeEEEecCCcccccccccCCCCCCCcccccc-cCC---CCCHHH----HH
Q 006375 483 TKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEE-WGD---PWKEEF----YF 551 (648)
Q Consensus 483 d~~~i~i~G~S~GG~l~~~~~~~~p---~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~-~g~---~~~~~~----~~ 551 (648)
+.+++.++|+|+||.++..++.++| +.++++|+..+.......... .. ....... +.. +..... ..
T Consensus 132 ~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (300)
T 1kez_A 132 GDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMN-AW--LEELTATLFDRETVRMDDTRLTALGA 208 (300)
T ss_dssp SSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHHHH-HH--HHHHHGGGCCCCSSCCCHHHHHHHHH
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhHHH-HH--HHHHHHHHHhCcCCccchHHHHHHHH
Confidence 3468999999999999999999987 489999988876432110000 00 0000000 000 111111 11
Q ss_pred HHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhc-CCCCCeEEEEecCCCCccCCC-chHHHHHHHHHH
Q 006375 552 YMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREM-KTDDNILLFKCELGAGHFSKS-GRFERLREAAFT 629 (648)
Q Consensus 552 ~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~ 629 (648)
++.....+ ...++++| +|+++| .|+.+++.. .. +... ....++++++ + ||+... ...+.+.. .+
T Consensus 209 ~~~~~~~~-~~~~i~~P-~lii~G-~d~~~~~~~-~~----~~~~~~~~~~~~~i~---g-gH~~~~~e~~~~~~~--~i 274 (300)
T 1kez_A 209 YDRLTGQW-RPRETGLP-TLLVSA-GEPMGPWPD-DS----WKPTWPFEHDTVAVP---G-DHFTMVQEHADAIAR--HI 274 (300)
T ss_dssp HHHHTTTC-CCCCCSCC-BEEEEE-SSCSSCCCS-SC----CSCCCSSCCEEEEES---S-CTTTSSSSCSHHHHH--HH
T ss_pred HHHHHhcC-CCCCCCCC-EEEEEe-CCCCCCCcc-cc----hhhhcCCCCeEEEec---C-CChhhccccHHHHHH--HH
Confidence 11211111 24567888 999999 566777655 22 2222 1134555554 6 897653 44443333 45
Q ss_pred HHHHHHhcCC
Q 006375 630 YTFLMRALSM 639 (648)
Q Consensus 630 ~~fl~~~l~~ 639 (648)
.+||.+....
T Consensus 275 ~~fl~~~~~~ 284 (300)
T 1kez_A 275 DAWLGGGNSS 284 (300)
T ss_dssp HHHHTCC---
T ss_pred HHHHHhccCC
Confidence 6788765543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.2e-08 Score=100.15 Aligned_cols=251 Identities=13% Similarity=0.044 Sum_probs=128.5
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-c---ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P---LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~---~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
..+.|||||+ |+++...++ ...|+++++++++.... . .......++|+||| .|++.... ...+..+++
T Consensus 43 ~~~a~spdg~-l~~~~~~~~--~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~----~~~v~v~~~ 115 (347)
T 3hfq_A 43 TYLALSAKDC-LYSVDKEDD--EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH----KGTAEVMKI 115 (347)
T ss_dssp CCEEECTTCE-EEEEEEETT--EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT----TTEEEEEEE
T ss_pred ceEEEccCCe-EEEEEecCC--CceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC----CCEEEEEEe
Confidence 4688999999 554443222 46899999988774322 1 12223458999999 66554422 234666666
Q ss_pred CCCCCCcEEEEeecC----------CCeEEEEEeCCCCcEEEEEEccccccEEEEEECC-CCCceeEeee--ccc--c-e
Q 006375 159 EADQSNDICLYHEKD----------DIYSLGLQASESKKFLFIASESKITRFVFYLDVS-KPEELRVLTP--RVV--G-V 222 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~----------~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~-~~~~~~~l~~--~~~--~-~ 222 (648)
..... ...+..... ......+.++|||+ +++... ....|++++++ +++ +..+.. ... + .
T Consensus 116 ~~~g~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~--~~~~v~~~~~~~~g~-~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 116 AADGA-LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL--GSDKVYVYNVSDAGQ-LSEQSVLTMEAGFGPR 190 (347)
T ss_dssp CTTSC-EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET--TTTEEEEEEECTTSC-EEEEEEEECCTTCCEE
T ss_pred CCCCC-eeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC--CCCEEEEEEECCCCc-EEEeeeEEcCCCCCCc
Confidence 43211 122221111 01234578999999 655332 34578888887 454 333221 111 1 2
Q ss_pred eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee--EecC-CCC----cccceEEEeCC--EEEEEEecCCeeEEE
Q 006375 223 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPH-RES----VKLQDIQLFID--HLAVYEREGGLQKIT 293 (648)
Q Consensus 223 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~-~~~----~~~~~~~~~~~--~l~~~~~~~~~~~l~ 293 (648)
...|+|||++||+....+ ....++.++..+ +.... .+.. ... ..+..+.++++ ++++....+ ..+.
T Consensus 191 ~~~~spdg~~l~v~~~~~--~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~--~~v~ 265 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELS--SQIASLKYDTQT-GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY--NTLA 265 (347)
T ss_dssp EEEECTTSSEEEEEETTT--TEEEEEEEETTT-TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT--TEEE
T ss_pred eEEECCCCCEEEEEeCCC--CEEEEEEecCCC-CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC--CEEE
Confidence 346999999888765542 233455444423 22211 1111 111 12444555554 555554433 4677
Q ss_pred EEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEE
Q 006375 294 TYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV 358 (648)
Q Consensus 294 v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 358 (648)
+++++..+. +..+ ..+. ........+.+++++..+++. +....--.+|.+|..+|+.+
T Consensus 266 v~~~~~~g~-~~~~---~~~~--~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 266 VFAVTADGH-LTLI---QQIS--TEGDFPRDFDLDPTEAFVVVV-NQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEECGGGC-EEEE---EEEE--CSSSCCCEEEECTTSSEEEEE-ETTTTEEEEEEECTTTCCEE
T ss_pred EEEECCCCc-EEEe---EEEe--cCCCCcCeEEECCCCCEEEEE-EcCCCcEEEEEEeCCCCeEE
Confidence 888763221 1111 1111 101012234456777755443 33333345666688888843
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=120.21 Aligned_cols=112 Identities=12% Similarity=0.038 Sum_probs=81.3
Q ss_pred CCCcEEEEecCCCCCCCCCCCch-hHHHHHH-CCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNS-SRLSLLD-RGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 481 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~-~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 481 (648)
.+.|+||++||..+.. ...|.. ....|++ .||.|+++|+||.|..... ... ..-....+|+.+.+++|.++..
T Consensus 68 ~~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~g~s~~~--~~~--~~~~~~~~dl~~~i~~l~~~~g 142 (432)
T 1gpl_A 68 LNRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQYS--QAS--QNIRVVGAEVAYLVQVLSTSLN 142 (432)
T ss_dssp TTSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHHHHTSCHH--HHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECccccCccch--hhH--hhHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999965543 223444 4556766 7999999999987764321 110 0111234788888888875533
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
++.+++.++|+|+||.+++.++.++|++++++++..|..
T Consensus 143 ~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~ 181 (432)
T 1gpl_A 143 YAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAE 181 (432)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccccceeEEecccc
Confidence 567899999999999999999999999999999887753
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=109.86 Aligned_cols=210 Identities=11% Similarity=0.034 Sum_probs=114.4
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHH-HHHHHcCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACA-EYLIKNCYC 482 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~ 482 (648)
+..|.||++||.........|......| ..||.|+.+|+||.|..... ...++++.+.+ +.+....
T Consensus 79 ~~~~~lv~lhG~~~~~~~~~~~~~~~~L-~~~~~v~~~d~~G~G~~~~~----------~~~~~~~~~~~~~~l~~~~-- 145 (319)
T 3lcr_A 79 QLGPQLILVCPTVMTTGPQVYSRLAEEL-DAGRRVSALVPPGFHGGQAL----------PATLTVLVRSLADVVQAEV-- 145 (319)
T ss_dssp CSSCEEEEECCSSTTCSGGGGHHHHHHH-CTTSEEEEEECTTSSTTCCE----------ESSHHHHHHHHHHHHHHHH--
T ss_pred CCCCeEEEECCCCcCCCHHHHHHHHHHh-CCCceEEEeeCCCCCCCCCC----------CCCHHHHHHHHHHHHHHhc--
Confidence 4468899999932222233456555565 67999999999998742211 12334444332 2333221
Q ss_pred CCCeEEEEeeChhHHHHHHHHhhC---CCceeEEEecCCccccccc-ccCCCCC-CCcccc---cccCCCC-CHHHH---
Q 006375 483 TKEKLCIEGRSAGGLLIGAVLNMR---PDLFKAAVAAVPFVDVLTT-MLDPTIP-LTTAEW---EEWGDPW-KEEFY--- 550 (648)
Q Consensus 483 d~~~i~i~G~S~GG~l~~~~~~~~---p~~~~a~v~~~~~~d~~~~-~~~~~~~-~~~~~~---~~~g~~~-~~~~~--- 550 (648)
...++.++|+||||.++..++.+. |+.++++|+..+....... ....... +....+ ..+.... .....
T Consensus 146 ~~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 225 (319)
T 3lcr_A 146 ADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDGGRPEELFRSALNERFVEYLRLTGGGNLSQRITAQ 225 (319)
T ss_dssp TTSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccchhhHHHHHHHHHHHHhhhhcccCCCchhHHHHHH
Confidence 226899999999999999998877 7888888887654321110 0000000 000000 0011111 01111
Q ss_pred -HHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCc--hHHHHHHHH
Q 006375 551 -FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG--RFERLREAA 627 (648)
Q Consensus 551 -~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~--~~~~~~~~~ 627 (648)
.++..+..+ ...++++| +|+++|++ +.+++.....+.+.+.. ....+.+ .++|..... ..+.+. .
T Consensus 226 ~~~~~~~~~~-~~~~i~~P-vLli~g~~-~~~~~~~~~~~~~~~~~---~~~~~~~----~g~H~~~~~~~~~~~va--~ 293 (319)
T 3lcr_A 226 VWCLELLRGW-RPEGLTAP-TLYVRPAQ-PLVEQEKPEWRGDVLAA---MGQVVEA----PGDHFTIIEGEHVASTA--H 293 (319)
T ss_dssp HHHHHHTTTC-CCCCCSSC-EEEEEESS-CSSSCCCTHHHHHHHHT---CSEEEEE----SSCTTGGGSTTTHHHHH--H
T ss_pred HHHHHHHhcC-CCCCcCCC-EEEEEeCC-CCCCcccchhhhhcCCC---CceEEEe----CCCcHHhhCcccHHHHH--H
Confidence 111111111 22567888 99999988 56777778787776653 2333444 457765443 333332 2
Q ss_pred HHHHHHHHhcC
Q 006375 628 FTYTFLMRALS 638 (648)
Q Consensus 628 ~~~~fl~~~l~ 638 (648)
.+.+||.+...
T Consensus 294 ~i~~fL~~~~~ 304 (319)
T 3lcr_A 294 IVGDWLREAHA 304 (319)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhccc
Confidence 56788887653
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-10 Score=125.11 Aligned_cols=132 Identities=15% Similarity=0.059 Sum_probs=88.2
Q ss_pred CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCC-CchhHHHHHH-CCCEEEEEccCCC-CCCChhhhhcccc
Q 006375 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPA-FNSSRLSLLD-RGFIFAIAQIRGG-GELGRQWYENGKF 459 (648)
Q Consensus 383 s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~-~G~~v~~~~~rG~-g~~g~~~~~~~~~ 459 (648)
+.|...+ .++.|+.. .+++.|+||++|||........ .......|+. +|++|+.+|||.+ -|++.... ...
T Consensus 93 ~edcl~l--~v~~P~~~--~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~g~vvv~~nYRlg~~Gf~~~~~--~~~ 166 (543)
T 2ha2_A 93 SEDCLYL--NVWTPYPR--PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALPG--SRE 166 (543)
T ss_dssp ESCCCEE--EEEEESSC--CSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCTT--CSS
T ss_pred CCcCCeE--EEeecCCC--CCCCCeEEEEECCCccccCCCCCCcCChHHHHhcCCEEEEEecccccccccccCCC--CCC
Confidence 4455444 44566542 3456899999999864333222 1122356665 6999999999953 12221100 001
Q ss_pred cCCCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 006375 460 LKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFV 520 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~~~a~v~~~~~~ 520 (648)
......+.|+.++++|+.++ ...||+||.|+|+|+||.+++.++... +.+|+++|+.+|..
T Consensus 167 ~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 167 APGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp CCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 11223689999999999876 236999999999999999998877753 46899999999854
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.9e-10 Score=109.06 Aligned_cols=101 Identities=11% Similarity=-0.033 Sum_probs=67.3
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
+..|.||++||+.+.... |..... +..+|.|+.+|+||.+.. .....+++++.+.+..++..- ..
T Consensus 19 ~~~~~lv~lhg~~~~~~~--~~~~~~--l~~~~~v~~~d~~G~~~~----------~~~~~~~~~~~~~~~~~i~~~-~~ 83 (265)
T 3ils_A 19 VARKTLFMLPDGGGSAFS--YASLPR--LKSDTAVVGLNCPYARDP----------ENMNCTHGAMIESFCNEIRRR-QP 83 (265)
T ss_dssp TSSEEEEEECCTTCCGGG--GTTSCC--CSSSEEEEEEECTTTTCG----------GGCCCCHHHHHHHHHHHHHHH-CS
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHh--cCCCCEEEEEECCCCCCC----------CCCCCCHHHHHHHHHHHHHHh-CC
Confidence 456789999997665433 444344 367999999999985321 111234555554443333321 12
Q ss_pred CCeEEEEeeChhHHHHHHHHh---hCCCceeEEEecCCc
Q 006375 484 KEKLCIEGRSAGGLLIGAVLN---MRPDLFKAAVAAVPF 519 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~---~~p~~~~a~v~~~~~ 519 (648)
..++.++||||||.++..++. .+|+.++++|+..+.
T Consensus 84 ~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~ 122 (265)
T 3ils_A 84 RGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAP 122 (265)
T ss_dssp SCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred CCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCC
Confidence 258999999999999998887 678888888877653
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=99.03 E-value=3.7e-10 Score=120.94 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=88.9
Q ss_pred CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC-CCchhHHHHHHCC-CEEEEEccCCCC-CCChhhhhc--c
Q 006375 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNSSRLSLLDRG-FIFAIAQIRGGG-ELGRQWYEN--G 457 (648)
Q Consensus 383 s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~~~~l~~~G-~~v~~~~~rG~g-~~g~~~~~~--~ 457 (648)
+.|...+ .++.|+. ..++.|+||++|||....... ........|+++| ++|+.+|||.+. |++..-... .
T Consensus 81 ~edcl~l--~v~~P~~---~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~~~~~ 155 (498)
T 2ogt_A 81 SEDGLYL--NIWSPAA---DGKKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDSFGEA 155 (498)
T ss_dssp BSCCCEE--EEEESCS---SSCCEEEEEEECCSTTTSCCTTCGGGCCHHHHHHHTCEEEEECCCCHHHHCCCCTTTTCGG
T ss_pred CCCCcEE--EEEecCC---CCCCCcEEEEEcCCccCCCCCCCCcCCHHHHHhCCCEEEEeCCCcCchhhccCchhhcccc
Confidence 4555444 4456653 246789999999986332221 1122246777776 999999999421 222111000 0
Q ss_pred cccCCCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhC--CCceeEEEecCCccc
Q 006375 458 KFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFVD 521 (648)
Q Consensus 458 ~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~~~a~v~~~~~~d 521 (648)
........+.|+.++++|+.++ ...||+||.|+|+|+||.+++.++... ..+|+++|+.+|..+
T Consensus 156 ~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~ 224 (498)
T 2ogt_A 156 YAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGS 224 (498)
T ss_dssp GTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred ccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCcc
Confidence 0111123578999999999876 236999999999999999998887753 458999999999765
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-07 Score=102.56 Aligned_cols=259 Identities=10% Similarity=-0.000 Sum_probs=146.0
Q ss_pred EeeEEeCC----CCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-ccc-----------C-ccceeEEecCC-eEEEEEe
Q 006375 83 VGCFQVSP----DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-----------G-VTASVEWAGNE-ALVYITM 144 (648)
Q Consensus 83 ~~~~~~SP----DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~-----------~-~~~~~~WspDg-~l~y~~~ 144 (648)
...+.+|| ||++|+.+....+ +|.|+|.++++.+.. ... + ....+.+|||+ .++++.
T Consensus 224 p~~va~sp~~~~dg~~l~v~~~~~~----~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~- 298 (543)
T 1nir_A 224 ARSVESSKFKGYEDRYTIAGAYWPP----QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV- 298 (543)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEESS----EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-
T ss_pred cceEEeCCCcCCCCCEEEEEEccCC----eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE-
Confidence 46789999 9999877654444 688999999887632 111 1 23458899999 655543
Q ss_pred CCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-----cc
Q 006375 145 DEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-----RV 219 (648)
Q Consensus 145 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-----~~ 219 (648)
....+|+.+++.+... ..+..-....+..++.|+|||+++++... ..+.|.++|+.+++ .....+ ..
T Consensus 299 ---~~~g~i~vvd~~~~~~--l~~~~i~~~~~~~~~~~spdg~~l~va~~--~~~~v~v~D~~tg~-l~~~i~~g~~ph~ 370 (543)
T 1nir_A 299 ---KETGKVLLVNYKDIDN--LTVTSIGAAPFLHDGGWDSSHRYFMTAAN--NSNKVAVIDSKDRR-LSALVDVGKTPHP 370 (543)
T ss_dssp ---TTTTEEEEEECTTSSS--CEEEEEECCSSCCCEEECTTSCEEEEEEG--GGTEEEEEETTTTE-EEEEEECSSSBCC
T ss_pred ---CCCCeEEEEEecCCCc--ceeEEeccCcCccCceECCCCCEEEEEec--CCCeEEEEECCCCe-EEEeeccCCCCCC
Confidence 2345799999887532 22111122344446789999999876543 34578889999886 333222 11
Q ss_pred cceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCC--c--cee--Eec-CCCCcccceEEEeCCEEEEEEecC----C
Q 006375 220 VGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTS--E--TTV--LIP-HRESVKLQDIQLFIDHLAVYEREG----G 288 (648)
Q Consensus 220 ~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~--~--~~~--~~~-~~~~~~~~~~~~~~~~l~~~~~~~----~ 288 (648)
......++|+++.+|.+.... +..|.+++.+..+ . .+. .++ +.....-..+++++..+++...-+ .
T Consensus 371 g~g~~~~~p~~g~~~~s~~~~---d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 371 GRGANFVHPKYGPVWSTSHLG---DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp TTCEEEEETTTEEEEEEEBSS---SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CCCcccCCCCCccEEEeccCC---CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 111122567877776665431 2357777775411 0 111 233 222212223444555665544211 1
Q ss_pred eeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeC-CCCCEEEEEECCCCcE
Q 006375 289 LQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSL-RTPPSVYDYDMDMGIS 357 (648)
Q Consensus 289 ~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~-~~P~~~~~~d~~~~~~ 357 (648)
...+.++++++.......|+-.+.-.+++..-.+..+.++++++.++++..+- .....|..+|.+|+++
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 34799999885322101110000000122222233456778999988876443 4578899999999983
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-07 Score=95.76 Aligned_cols=250 Identities=14% Similarity=0.085 Sum_probs=131.2
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECC--CCCeeec---cccCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE--TGTPVGK---PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~--~g~~~~~---~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
...+.|||||++|+++....| .|.+++++ +++.... ........++|+||| .+++.... ...|+.+
T Consensus 40 ~~~~~~spdg~~l~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----~~~i~~~ 111 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVRPEF----RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN----AGNVSVT 111 (343)
T ss_dssp CCCEEECTTSSEEEEEETTTT----EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT----TTEEEEE
T ss_pred CceEEECCCCCEEEEeecCCC----eEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecC----CCeEEEE
Confidence 346899999999888765434 56666655 7764421 122334569999999 66555432 2346677
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCC-CCceeEee-----eccc-c-eeeeEee
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK-PEELRVLT-----PRVV-G-VDTAASH 228 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~-~~~~~~l~-----~~~~-~-~~~~~s~ 228 (648)
++..+. ....+...........+.|+|||++|++... ....|+++|+.+ ++ ...+. .... . ....|+|
T Consensus 112 d~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p 187 (343)
T 1ri6_A 112 RLEDGL-PVGVVDVVEGLDGCHSANISPDNRTLWVPAL--KQDRICLFTVSDDGH-LVAQDPAEVTTVEGAGPRHMVFHP 187 (343)
T ss_dssp EEETTE-EEEEEEEECCCTTBCCCEECTTSSEEEEEEG--GGTEEEEEEECTTSC-EEEEEEEEEECSTTCCEEEEEECT
T ss_pred ECCCCc-cccccccccCCCCceEEEECCCCCEEEEecC--CCCEEEEEEecCCCc-eeeecccccccCCCCCcceEEECC
Confidence 764221 1122222122222335789999999876542 335688999877 54 33221 1111 1 2345999
Q ss_pred cCCEEEEEeccCCCCCcEEEEEeCCC-CCccee--Ee---cCC--CCcccceEEEeC--CEEEEEEecCCeeEEEEEEcC
Q 006375 229 RGNHFFITRRSDELFNSELLACPVDN-TSETTV--LI---PHR--ESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 229 dg~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~--~~---~~~--~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~ 298 (648)
+|+.|++....+ ..+.+++++. .+.... .+ +.. ....+..+.+.+ +.+++....+ ..+.+++++
T Consensus 188 dg~~l~~~~~~~----~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~--~~i~v~d~~ 261 (343)
T 1ri6_A 188 NEQYAYCVNELN----SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA--SLITVFSVS 261 (343)
T ss_dssp TSSEEEEEETTT----TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT--TEEEEEEEC
T ss_pred CCCEEEEEeCCC----CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC--CEEEEEEEc
Confidence 999888776432 3566667642 122211 11 111 011233455654 4555444333 467888887
Q ss_pred CCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 299 AVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 299 ~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
..++....+ ..+. ... .+..+.++++++.+++. +.....-.+|.+|..+++.
T Consensus 262 ~~~~~~~~~---~~~~--~~~-~~~~~~~s~dg~~l~~~-~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 262 EDGSVLSKE---GFQP--TET-QPRGFNVDHSGKYLIAA-GQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp TTSCCEEEE---EEEE--CSS-SCCCEEECTTSSEEEEE-CTTTCEEEEEEEETTTTEE
T ss_pred CCCCceEEe---eeec--CCC-ccceEEECCCCCEEEEe-cCCCCeEEEEEEcCCCcee
Confidence 433322111 1111 111 12234556677755443 3233334466668888874
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.7e-08 Score=99.75 Aligned_cols=204 Identities=17% Similarity=0.145 Sum_probs=107.7
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECC-CCCeeec-cc--cC----------ccceeEEecCCeEEEEEeCCCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE-TGTPVGK-PL--VG----------VTASVEWAGNEALVYITMDEILR 149 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~-~g~~~~~-~~--~~----------~~~~~~WspDg~l~y~~~~~~~~ 149 (648)
..+.|||||++|+++...+| .|.+++++ +|..... .+ .+ ....++|+|||. +|.... .
T Consensus 89 ~~~a~spdg~~l~~~~~~~~----~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~---~ 160 (347)
T 3hfq_A 89 AYVAVDEARQLVYSANYHKG----TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL---G 160 (347)
T ss_dssp SEEEEETTTTEEEEEETTTT----EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET---T
T ss_pred EEEEECCCCCEEEEEeCCCC----EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC---C
Confidence 46789999999887764444 67777874 3443211 11 10 123489999998 444432 2
Q ss_pred CceEEEEECCCCCCCcEEEE--eecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee---ccc----
Q 006375 150 PDKAWLHKLEADQSNDICLY--HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP---RVV---- 220 (648)
Q Consensus 150 ~~~l~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~---~~~---- 220 (648)
...|+.+++.... +-..+. ..........+.|+|||++|++.......-.+|.++..+++ ++.+.. ...
T Consensus 161 ~~~v~~~~~~~~g-~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~-~~~~~~~~~~~~~~~~ 238 (347)
T 3hfq_A 161 SDKVYVYNVSDAG-QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA-FTQLGIVKTIPADYTA 238 (347)
T ss_dssp TTEEEEEEECTTS-CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-EEEEEEEESSCTTCCS
T ss_pred CCEEEEEEECCCC-cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-eEEeeeeeecCCCCCC
Confidence 2458888877321 111111 11112223357899999998876544333344444443454 332221 111
Q ss_pred ---ceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee--EecCCCCcccceEEEeC--CEEEEEEecCCeeEEE
Q 006375 221 ---GVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFI--DHLAVYEREGGLQKIT 293 (648)
Q Consensus 221 ---~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~ 293 (648)
.....|+|||++||+....+ ..|.+++++..+..+. .++.. ...+..+.+++ +++++....++ .+.
T Consensus 239 ~~~~~~i~~spdG~~l~v~~~~~----~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~--~v~ 311 (347)
T 3hfq_A 239 HNGAAAIRLSHDGHFLYVSNRGY----NTLAVFAVTADGHLTLIQQISTE-GDFPRDFDLDPTEAFVVVVNQNTD--NAT 311 (347)
T ss_dssp CCEEEEEEECTTSCEEEEEEETT----TEEEEEEECGGGCEEEEEEEECS-SSCCCEEEECTTSSEEEEEETTTT--EEE
T ss_pred CCcceeEEECCCCCEEEEEeCCC----CEEEEEEECCCCcEEEeEEEecC-CCCcCeEEECCCCCEEEEEEcCCC--cEE
Confidence 11245999999887765532 3566666542222222 22221 22245566655 45655544433 566
Q ss_pred EEEcCCCCCcc
Q 006375 294 TYRLPAVGEPL 304 (648)
Q Consensus 294 v~~~~~~g~~~ 304 (648)
+++++...+.+
T Consensus 312 v~~~d~~tg~l 322 (347)
T 3hfq_A 312 LYARDLTSGKL 322 (347)
T ss_dssp EEEECTTTCCE
T ss_pred EEEEeCCCCeE
Confidence 77666544544
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=7.2e-10 Score=111.57 Aligned_cols=120 Identities=13% Similarity=0.022 Sum_probs=83.9
Q ss_pred CeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCc-hhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCC
Q 006375 386 GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFN-SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN 464 (648)
Q Consensus 386 g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~ 464 (648)
+.++...+..|+.. . .+..+.||++||..+.... .|. .....|.++||.|+.+|+||.|..... .
T Consensus 13 ~~~l~~~i~~p~~~-~-~~~~~~VvllHG~~~~~~~-~~~~~l~~~L~~~G~~v~~~d~~g~g~~~~~-----------~ 78 (317)
T 1tca_A 13 KSVLDAGLTCQGAS-P-SSVSKPILLVPGTGTTGPQ-SFDSNWIPLSTQLGYTPCWISPPPFMLNDTQ-----------V 78 (317)
T ss_dssp HHHHHHTEEETTBC-T-TSCSSEEEEECCTTCCHHH-HHTTTHHHHHHTTTCEEEEECCTTTTCSCHH-----------H
T ss_pred HHHHhheeeCCCCC-C-CCCCCeEEEECCCCCCcch-hhHHHHHHHHHhCCCEEEEECCCCCCCCcHH-----------H
Confidence 33455555666554 2 2345679999996554321 144 455677788999999999986532111 1
Q ss_pred cHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCC---CceeEEEecCCccc
Q 006375 465 TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVAAVPFVD 521 (648)
Q Consensus 465 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~~~a~v~~~~~~d 521 (648)
..+++.+.++++.+.. ..+++.++||||||.++..++.+.| +.++++|+.+|..+
T Consensus 79 ~~~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~ 136 (317)
T 1tca_A 79 NTEYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 136 (317)
T ss_dssp HHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCC
Confidence 2467888888887653 2378999999999999988888765 78999999888643
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-10 Score=122.35 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=79.7
Q ss_pred CcEEEEecCCCCCCCCCC-CchhHHHHHHCCCEEEEEccCCCC-CCChhhhhcccccCCCCcHhHHHHHHHHHHHc---C
Q 006375 406 DPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQIRGGG-ELGRQWYENGKFLKKKNTFTDFIACAEYLIKN---C 480 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~~rG~g-~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~ 480 (648)
.|+||++|||........ .......|+++|++|+.+|||.+. |+... .+ ........+.|+.++++|+.++ .
T Consensus 115 ~Pviv~iHGGg~~~g~~~~~~~~~~~l~~~g~vvv~~nYRl~~~Gf~~~-~~--~~~~~n~gl~D~~~al~wv~~~i~~f 191 (551)
T 2fj0_A 115 LPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYGFLSL-NS--TSVPGNAGLRDMVTLLKWVQRNAHFF 191 (551)
T ss_dssp EEEEEEECCSTTTSCCSCTTTCBCTTGGGGSCEEEEECCCCHHHHHCCC-SS--SSCCSCHHHHHHHHHHHHHHHHTGGG
T ss_pred CCEEEEEcCCccccCCCcccccCHHHHHhCCeEEEEeCCcCCccccccC-cc--cCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 899999999754332222 112235677899999999999642 11110 00 0111224689999999999876 2
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHhh--CCCceeEEEecCCcc
Q 006375 481 YCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPFV 520 (648)
Q Consensus 481 ~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~~~a~v~~~~~~ 520 (648)
..||+||.|+|+|+||.+++.++.. .+.+|+++|+.+|..
T Consensus 192 ggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 233 (551)
T 2fj0_A 192 GGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGTS 233 (551)
T ss_dssp TEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCT
T ss_pred CCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCCc
Confidence 3699999999999999999888875 356899999999863
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.94 E-value=5.8e-08 Score=100.10 Aligned_cols=197 Identities=13% Similarity=0.126 Sum_probs=116.6
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
+..++|||||++||.+.. +....|+|||+++++.+.. .-.+....++|+||| .++... ++ .+.+++..+
T Consensus 136 ~~~v~fSpDg~~la~as~---~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s-~~-----~~~~~~~~~ 206 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASS---KVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT-GS-----SLEVISTVT 206 (365)
T ss_dssp EEEEEECTTSSCEEEEES---CSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC-SS-----CEEEEETTT
T ss_pred EEEEEEcCCCCEEEEEEC---CCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc-ce-----eEEEEEecc
Confidence 345789999999988753 2234899999999887643 122234569999999 665543 21 255666665
Q ss_pred CCCCcEEEEeec-CCCeEEEEEeCCCCcEEEEEEcccc-ccEEEEEECCCCCcee-----Eeeeccccee-eeEeecCCE
Q 006375 161 DQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKI-TRFVFYLDVSKPEELR-----VLTPRVVGVD-TAASHRGNH 232 (648)
Q Consensus 161 ~~~~~~~~~~~~-~~~~~~~~~~s~Dg~~l~~~~~~~~-~~~l~~~dl~~~~~~~-----~l~~~~~~~~-~~~s~dg~~ 232 (648)
+. ........ .......+.|+|||++++..+.... ...++.+++.... .. .+......+. ..|||||+.
T Consensus 207 ~~--~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~Spdg~~ 283 (365)
T 4h5i_A 207 GS--CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN-TSVLRSKQVTNRFKGITSMDVDMKGEL 283 (365)
T ss_dssp CC--EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE-EEEEEEEEEESSCSCEEEEEECTTSCE
T ss_pred Cc--ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce-ecceeeeeecCCCCCeEeEEECCCCCc
Confidence 52 11111111 1223446789999999887665443 2467777776654 21 1222222332 459999998
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcCC
Q 006375 233 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~ 299 (648)
|+..+.+ ..|.+.|+.+..... .+.......+..+.+.+|. +++....++ .++|++++.
T Consensus 284 lasgs~D-----~~V~iwd~~~~~~~~-~~~~gH~~~V~~v~fSpdg~~laS~S~D~--tvrvw~ip~ 343 (365)
T 4h5i_A 284 AVLASND-----NSIALVKLKDLSMSK-IFKQAHSFAITEVTISPDSTYVASVSAAN--TIHIIKLPL 343 (365)
T ss_dssp EEEEETT-----SCEEEEETTTTEEEE-EETTSSSSCEEEEEECTTSCEEEEEETTS--EEEEEECCT
T ss_pred eEEEcCC-----CEEEEEECCCCcEEE-EecCcccCCEEEEEECCCCCEEEEEeCCC--eEEEEEcCC
Confidence 7766653 357778887633222 2222222346667776653 344555554 577778863
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.6e-08 Score=98.90 Aligned_cols=250 Identities=13% Similarity=0.102 Sum_probs=133.9
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCC-eEEEEEEEECCCCCeeecc------ccCccceeEEecCCeEEEEEeCCCCCCceE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGD-EIYTVYVIDIETGTPVGKP------LVGVTASVEWAGNEALVYITMDEILRPDKA 153 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~-e~~~l~v~dl~~g~~~~~~------~~~~~~~~~WspDg~l~y~~~~~~~~~~~l 153 (648)
-.+..++|||||++||-..+.... -...|++++..++...... -......++|+||+.++....+ ..|
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~d-----g~v 117 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDS-----GAV 117 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETT-----SCE
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECC-----CEE
Confidence 357889999999999977653221 1247999998887654221 1122446999999966554432 237
Q ss_pred EEEECCCCCCCcEEEEee-cCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEeecCC
Q 006375 154 WLHKLEADQSNDICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGN 231 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~dg~ 231 (648)
.++++.++.......+.. ........+.|+|||++|+..+. ...|.++|+.+++....+......+. ..|+++++
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~---dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK---DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC---CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence 777776653221111211 11233457889999999875443 34588889988762222322222332 45888887
Q ss_pred EEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcCCCCCcccccCC
Q 006375 232 HFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQG 309 (648)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~ 309 (648)
.+++....+ ..|.+.|+..+.....+........+..+.+.+ +.+++....++ .+.++++.. +..+
T Consensus 195 ~~~~s~~~d----g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~--~i~~wd~~~-~~~~----- 262 (357)
T 4g56_B 195 TIFLSCGED----GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG--NVSLVNIKN-PDSA----- 262 (357)
T ss_dssp SCEEEEETT----SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS--CEEEEESSC-GGGC-----
T ss_pred ceeeeeccC----CceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc--ceeEEECCC-CcEe-----
Confidence 665554432 357777886643332222122222345555543 44555554444 577788763 2211
Q ss_pred CceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 310 GKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 310 ~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
.. +......|..+.+++++..++++.+. -..++.+|+.+++
T Consensus 263 -~~--~~~~~~~v~~l~~sp~~~~~lasgs~---D~~i~iwd~~~~~ 303 (357)
T 4g56_B 263 -QT--SAVHSQNITGLAYSYHSSPFLASISE---DCTVAVLDADFSE 303 (357)
T ss_dssp -EE--ECCCSSCEEEEEECSSSSCCEEEEET---TSCEEEECTTSCE
T ss_pred -EE--EeccceeEEEEEEcCCCCCEEEEEeC---CCEEEEEECCCCc
Confidence 11 11111124344555666655555443 2568888998887
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-07 Score=97.88 Aligned_cols=247 Identities=6% Similarity=0.052 Sum_probs=143.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECC--CCCeeec----cccCccceeEEecCC-eEEEEEeCCCCCCceEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE--TGTPVGK----PLVGVTASVEWAGNE-ALVYITMDEILRPDKAW 154 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~--~g~~~~~----~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~ 154 (648)
.+..+.|||||++|+++...+| .|.+||+. +++.+.. ........++|+||| .|+.... ...++
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----~g~v~ 174 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDK----SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-----FGDVY 174 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGT----EEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-----TSEEE
T ss_pred ceEEEEEcCCCCEEEEEECCCC----eEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-----CCcEE
Confidence 4788999999999877765555 68888988 7765532 122334569999999 6654432 34588
Q ss_pred EEECCCCCCCc--EEEEeecCCCeEEEEEeCCC---CcEEEEEEccccccEEEEEECCCCCceeE-eeecccce-eeeEe
Q 006375 155 LHKLEADQSND--ICLYHEKDDIYSLGLQASES---KKFLFIASESKITRFVFYLDVSKPEELRV-LTPRVVGV-DTAAS 227 (648)
Q Consensus 155 ~~~l~~~~~~~--~~~~~~~~~~~~~~~~~s~D---g~~l~~~~~~~~~~~l~~~dl~~~~~~~~-l~~~~~~~-~~~~s 227 (648)
.+++.++.... ...+... ......+.|+|| +++|+..+. +..|+++|+.+++.... +......+ ...|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s 250 (450)
T 2vdu_B 175 SIDINSIPEEKFTQEPILGH-VSMLTDVHLIKDSDGHQFIITSDR---DEHIKISHYPQCFIVDKWLFGHKHFVSSICCG 250 (450)
T ss_dssp EEETTSCCCSSCCCCCSEEC-SSCEEEEEEEECTTSCEEEEEEET---TSCEEEEEESCTTCEEEECCCCSSCEEEEEEC
T ss_pred EEecCCcccccccceeeecc-cCceEEEEEcCCCCCCcEEEEEcC---CCcEEEEECCCCceeeeeecCCCCceEEEEEC
Confidence 88887764321 1122222 233446789999 888775443 35688888887762222 22222222 34588
Q ss_pred ecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecC------------------------CCCcccceEEEeCC--EEE
Q 006375 228 HRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPH------------------------RESVKLQDIQLFID--HLA 281 (648)
Q Consensus 228 ~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~--~l~ 281 (648)
+|+.|+..+.. ..|.+.|+.+..... .+.. .....+..+.+.++ .++
T Consensus 251 -d~~~l~s~~~d-----~~v~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 323 (450)
T 2vdu_B 251 -KDYLLLSAGGD-----DKIFAWDWKTGKNLS-TFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA 323 (450)
T ss_dssp -STTEEEEEESS-----SEEEEEETTTCCEEE-EEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEE
T ss_pred -CCCEEEEEeCC-----CeEEEEECCCCcEee-eecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEE
Confidence 88877655432 478888887633222 2210 11223445566544 444
Q ss_pred EEEecCCeeEEEEEEc-CCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCC------EEEEEECCC
Q 006375 282 VYEREGGLQKITTYRL-PAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPP------SVYDYDMDM 354 (648)
Q Consensus 282 ~~~~~~~~~~l~v~~~-~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~------~~~~~d~~~ 354 (648)
+.... ...+.+|++ +..+..+.. ...+..+. .+..+.+++ +.+++...+...|. ++|.++..+
T Consensus 324 ~~~~~--d~~i~iw~~~~~~~~~l~~---~~~~~~~~---~v~~~~~~~--~~~~v~~~~~~~~~~~~~~i~v~~~~~~~ 393 (450)
T 2vdu_B 324 FFVEA--TKCIIILEMSEKQKGDLAL---KQIITFPY---NVISLSAHN--DEFQVTLDNKESSGVQKNFAKFIEYNLNE 393 (450)
T ss_dssp EEETT--CSEEEEEEECSSSTTCEEE---EEEEECSS---CEEEEEEET--TEEEEEECCTTCCSSCCCSEEEEEEETTT
T ss_pred EEECC--CCeEEEEEeccCCCCceee---ccEeccCC---ceEEEEecC--CcEEEEEecccCCCCCCcceEEEEEEcCC
Confidence 44423 356888888 222221111 11233222 233334444 46788888888886 899999988
Q ss_pred CcEE
Q 006375 355 GISV 358 (648)
Q Consensus 355 ~~~~ 358 (648)
++++
T Consensus 394 ~~~~ 397 (450)
T 2vdu_B 394 NSFV 397 (450)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 8743
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-09 Score=115.29 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=88.1
Q ss_pred CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCC-chhHHHHHH-CCCEEEEEccCCCC-CCChhhhhcccc
Q 006375 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF-NSSRLSLLD-RGFIFAIAQIRGGG-ELGRQWYENGKF 459 (648)
Q Consensus 383 s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~-~~~~~~l~~-~G~~v~~~~~rG~g-~~g~~~~~~~~~ 459 (648)
+.|. +.+.++.|+.. .++.|+||++|||......... ......|++ .|++|+.+|||.+. |++..... ..
T Consensus 89 ~edc--l~lnv~~P~~~---~~~~Pv~v~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~--~~ 161 (529)
T 1p0i_A 89 SEDC--LYLNVWIPAPK---PKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALPGN--PE 161 (529)
T ss_dssp CSCC--CEEEEEEESSC---CSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCTTC--TT
T ss_pred CCcC--CeEEEeeCCCC---CCCCeEEEEECCCccccCCCCccccChHHHhccCCeEEEEecccccccccccCCCC--CC
Confidence 3444 34455567543 2568999999997543322211 122356666 69999999999541 11110000 00
Q ss_pred cCCCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhC--CCceeEEEecCCccc
Q 006375 460 LKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFVD 521 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~~~a~v~~~~~~d 521 (648)
......+.|..+|++|+.++ ...||+||.|+|+|+||.+++.++... ..+|+++|+.+|...
T Consensus 162 ~~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 228 (529)
T 1p0i_A 162 APGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN 228 (529)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred CcCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCccc
Confidence 11223579999999999876 247999999999999999998888753 358999999999754
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.2e-07 Score=94.89 Aligned_cols=197 Identities=15% Similarity=0.035 Sum_probs=123.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-c-cCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-L-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|+|||+.++-.. .+| .|+++|+++++..... . ......++|+||+ .++++... ...|+.+++
T Consensus 171 ~v~~~~~~~~~~~~~s~~-~d~----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~i~~~d~ 241 (433)
T 3bws_A 171 FVETISIPEHNELWVSQM-QAN----AVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWI----SEDISVIDR 241 (433)
T ss_dssp EEEEEEEGGGTEEEEEEG-GGT----EEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETT----TTEEEEEET
T ss_pred ceeEEEEcCCCEEEEEEC-CCC----EEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecC----CCcEEEEEC
Confidence 567789999998765432 233 7999999998766422 1 2234569999999 66655432 246899998
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccc-----cccEEEEEECCCCCceeEeeecccc-eeeeEeecCCE
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK-----ITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNH 232 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~-----~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~ 232 (648)
.++ +....+ ........+.++|||++|++..... ....|+++|+.+++ .......... ....|+|+|+.
T Consensus 242 ~~~--~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~g~~ 316 (433)
T 3bws_A 242 KTK--LEIRKT--DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-LIDTIGPPGNKRHIVSGNTENK 316 (433)
T ss_dssp TTT--EEEEEC--CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE-EEEEEEEEECEEEEEECSSTTE
T ss_pred CCC--cEEEEe--cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc-EEeeccCCCCcceEEECCCCCE
Confidence 775 222222 2223345788999999988765432 24689999998876 3333222222 23468999998
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCe------------eEEEEEEcC
Q 006375 233 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGL------------QKITTYRLP 298 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~------------~~l~v~~~~ 298 (648)
+++....+ ..|.++++++. .....++.... +..+.+.+ +.+++....... ..++++++.
T Consensus 317 l~~~~~~~----~~v~v~d~~~~-~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 317 IYVSDMCC----SKIEVYDLKEK-KVQKSIPVFDK--PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp EEEEETTT----TEEEEEETTTT-EEEEEEECSSS--EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred EEEEecCC----CEEEEEECCCC-cEEEEecCCCC--CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 88876542 47888898763 33334444333 45566654 456555543322 378899886
Q ss_pred C
Q 006375 299 A 299 (648)
Q Consensus 299 ~ 299 (648)
.
T Consensus 390 ~ 390 (433)
T 3bws_A 390 T 390 (433)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.90 E-value=7.8e-07 Score=89.65 Aligned_cols=236 Identities=12% Similarity=0.058 Sum_probs=138.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-------cccCccceeEEecCC-eEEEEEeCCCCCCceE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-------PLVGVTASVEWAGNE-ALVYITMDEILRPDKA 153 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-------~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l 153 (648)
.+..+.|||||++|+... +| .|.+||+.+++.... ........++|+||+ .|+.... ...|
T Consensus 53 ~v~~~~~~~~~~~l~~~~--dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i 121 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG--KG----CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE-----ASTL 121 (337)
T ss_dssp CCCEEEECSSSSEEEEEC--BS----EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES-----SSEE
T ss_pred ceEEEEEecCCcEEEEcC--CC----eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC-----CCcE
Confidence 456789999999998775 34 799999988753311 112234569999999 6655433 2358
Q ss_pred EEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCE
Q 006375 154 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNH 232 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~ 232 (648)
..+++.++.......+... ......+.|+||+++|+..+. ...|+++|+.+++....+......+ ...|+|+|+.
T Consensus 122 ~~~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~---dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 122 SIWDLAAPTPRIKAELTSS-APACYALAISPDSKVCFSCCS---DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp EEEECCCC--EEEEEEECS-SSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEECCCCCcceeeecccC-CCceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCE
Confidence 8888887632222233322 233446789999999886543 3458999998876222332222222 3468999988
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcCCCCCcccccCCC
Q 006375 233 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGG 310 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~ 310 (648)
|+..+.. ..|...|+.... ....+.... .+..+.+.+ +.+++. ..++ .+.++++.. ...
T Consensus 198 l~~~~~d-----g~i~~~d~~~~~-~~~~~~~~~--~v~~~~~s~~~~~l~~~-~~~~--~i~~~~~~~--~~~------ 258 (337)
T 1gxr_A 198 LWTGGLD-----NTVRSWDLREGR-QLQQHDFTS--QIFSLGYCPTGEWLAVG-MESS--NVEVLHVNK--PDK------ 258 (337)
T ss_dssp EEEEETT-----SEEEEEETTTTE-EEEEEECSS--CEEEEEECTTSSEEEEE-ETTS--CEEEEETTS--SCE------
T ss_pred EEEEecC-----CcEEEEECCCCc-eEeeecCCC--ceEEEEECCCCCEEEEE-cCCC--cEEEEECCC--CCe------
Confidence 7766543 468888887632 222333332 245555544 444433 3333 577888873 211
Q ss_pred ceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 311 KSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 311 ~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
..+......+..+.+++++..+. +.+ .-..+..+++.+++.
T Consensus 259 --~~~~~~~~~v~~~~~~~~~~~l~-~~~---~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 259 --YQLHLHESCVLSLKFAYCGKWFV-STG---KDNLLNAWRTPYGAS 299 (337)
T ss_dssp --EEECCCSSCEEEEEECTTSSEEE-EEE---TTSEEEEEETTTCCE
T ss_pred --EEEcCCccceeEEEECCCCCEEE-Eec---CCCcEEEEECCCCeE
Confidence 11111111233445566676443 332 246799999988874
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.89 E-value=3.2e-09 Score=114.71 Aligned_cols=132 Identities=16% Similarity=0.125 Sum_probs=87.9
Q ss_pred CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCC-chhHHHHH-HCCCEEEEEccCCCC-CCChhhhhcccc
Q 006375 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF-NSSRLSLL-DRGFIFAIAQIRGGG-ELGRQWYENGKF 459 (648)
Q Consensus 383 s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~-~~~~~~l~-~~G~~v~~~~~rG~g-~~g~~~~~~~~~ 459 (648)
+.|...+ .++.|+.. .++.|+||++|||......... ......|+ ++|++|+.+|||.+. |+...-. ...
T Consensus 91 sedcl~l--nv~~P~~~---~~~~Pv~v~iHGG~~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~--~~~ 163 (537)
T 1ea5_A 91 SEDCLYL--NIWVPSPR---PKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHG--SQE 163 (537)
T ss_dssp CSCCCEE--EEEECSSC---CSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCTT--CSS
T ss_pred CCcCCeE--EEeccCCC---CCCCeEEEEECCCcccCCCCCCCccChHHHHhcCCEEEEEeccCccccccccCCC--CCC
Confidence 4455444 44556543 3578999999997543332221 12235666 679999999999531 1110000 001
Q ss_pred cCCCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhh--CCCceeEEEecCCccc
Q 006375 460 LKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPFVD 521 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~~~a~v~~~~~~d 521 (648)
......+.|..+|++|+.++ ...||++|.|+|+|+||.+++.++.. .+.+|+++|+.+|...
T Consensus 164 ~~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 230 (537)
T 1ea5_A 164 APGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 230 (537)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred CcCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCcc
Confidence 11223589999999999876 23699999999999999999888775 2358999999999653
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-09 Score=115.74 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=85.9
Q ss_pred eCCCCeEEeEEEEEeeCccc-cCCCCcEEEEecCCCCCCCCCC---C----chhHHHHHHC-CCEEEEEccCCCC-CCCh
Q 006375 382 SASDGTQIPICIVYRKNLVK-LDGSDPLLLYGYGSYEICNDPA---F----NSSRLSLLDR-GFIFAIAQIRGGG-ELGR 451 (648)
Q Consensus 382 ~s~~g~~i~~~l~~~~~~~~-~~~~~P~vl~~hGg~~~~~~~~---~----~~~~~~l~~~-G~~v~~~~~rG~g-~~g~ 451 (648)
.+.|. +.+.++.|+.. . .+++.|+||++|||........ + ......|+.+ |++|+.+|||.+. ++..
T Consensus 76 ~sedc--l~lnv~~P~~~-~~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl~ 152 (579)
T 2bce_A 76 GNEDC--LYLNIWVPQGR-KEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLS 152 (579)
T ss_dssp SCSCC--CEEEEEEEECS-SSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCC
T ss_pred CCCCC--CEEEEEECCCC-CCCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCCc
Confidence 34554 44455667653 2 3457899999999853322211 1 1123455554 7999999999532 2211
Q ss_pred hhhhcccccCCCC-cHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhh--CCCceeEEEecCCc
Q 006375 452 QWYENGKFLKKKN-TFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPF 519 (648)
Q Consensus 452 ~~~~~~~~~~~~~-~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~~~a~v~~~~~ 519 (648)
. +......| .+.|..+|++|+.++ ...||+||.|+|+|+||.++..++.. ...+|+++|+.+|.
T Consensus 153 ~----~~~~~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 153 T----GDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp C----SSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred C----CCCCCCCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 0 00011112 589999999999875 24699999999999999999887764 34589999999874
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-06 Score=87.62 Aligned_cols=253 Identities=11% Similarity=0.071 Sum_probs=123.7
Q ss_pred eeEEeCCCCCEEEEEEeCC-CCeEEEEEEEECCCCCeeec-ccc--Cc-cceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 84 GCFQVSPDNKLVAYAEDTK-GDEIYTVYVIDIETGTPVGK-PLV--GV-TASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~-G~e~~~l~v~dl~~g~~~~~-~~~--~~-~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
..+.|||||++|+++...+ +.....+|.++.++|+.... ... +. ...+++ || .++.... ....|..++
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~----~~~~v~~~~ 126 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANY----SGGSITVFP 126 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEET----TTTEEEEEE
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEEC----CCCEEEEEE
Confidence 3578999999987776532 22255666667666765432 221 11 222444 77 5554432 124577777
Q ss_pred CCCCCCCc---EEEEeec-C-------CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCc------ee------E
Q 006375 158 LEADQSND---ICLYHEK-D-------DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE------LR------V 214 (648)
Q Consensus 158 l~~~~~~~---~~~~~~~-~-------~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~------~~------~ 214 (648)
+.+..... ..+.... . ......+.++|||++|++.... ...+++++++.... +. .
T Consensus 127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG--TDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC--CCEEEEEEEcCCCCcccccceeecccccc
Confidence 76432111 1111111 0 0112457899999999875543 34555555443220 11 1
Q ss_pred ee-ecccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee--EecCC--CCcccceEEEeC--CEEEEEEec
Q 006375 215 LT-PRVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHR--ESVKLQDIQLFI--DHLAVYERE 286 (648)
Q Consensus 215 l~-~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~--~~l~~~~~~ 286 (648)
+. ....+ ....|+|||+.||+....+ ..|.++++++ +.... .+... .......+.+++ +++++....
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~----~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEIG----GTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTT----CEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCCC----CeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 11 11111 2346999999887775432 3566666654 22211 11111 111233555554 455444332
Q ss_pred CCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 287 GGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 287 ~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
+...+.+|+++...+.+..+ ..+. . ......+.++++++.+++. +....--.+|.+|.++++.
T Consensus 280 -~~~~i~v~~~~~~~g~~~~~---~~~~--~-g~~~~~~~~spdg~~l~~~-~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 280 -KADGVAIFKVDETNGTLTKV---GYQL--T-GIHPRNFIITPNGKYLLVA-CRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp -SSCEEEEEEECTTTCCEEEE---EEEE--C-SSCCCEEEECTTSCEEEEE-ETTTTEEEEEEECTTTCCE
T ss_pred -CCCEEEEEEEcCCCCcEEEe---eEec--C-CCCCceEEECCCCCEEEEE-ECCCCCEEEEEEECCCCcE
Confidence 14568888886433322111 1111 1 0112234556777755443 3333334567788888883
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-07 Score=93.11 Aligned_cols=238 Identities=10% Similarity=0.006 Sum_probs=132.3
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec---cc---cCccceeEEecCCeEEEEEeCCCCCCceEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK---PL---VGVTASVEWAGNEALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~---~~---~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~ 156 (648)
+..+.||||++. +.. ..+| .|+|||+++++.... .. .+....++|+|||.++++...+ ..|.++
T Consensus 85 v~~~~~s~d~~l-~~~-s~dg----~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d----~~i~iw 154 (344)
T 4gqb_B 85 VADLTWVGERGI-LVA-SDSG----AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD----ICIKVW 154 (344)
T ss_dssp EEEEEEETTTEE-EEE-ETTS----EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT----SCEEEE
T ss_pred EEEEEEeCCCeE-EEE-ECCC----EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC----CeEEEE
Confidence 678899999754 433 3334 799999999875421 11 2234569999999444444422 248888
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc---eeeeEeecCCEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG---VDTAASHRGNHF 233 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~---~~~~~s~dg~~l 233 (648)
++.++ +....+..+. .....+.|+++++.++++... +..|.++|+.+++....+.....+ ....|+|++..+
T Consensus 155 d~~~~--~~~~~~~~h~-~~V~~~~~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 229 (344)
T 4gqb_B 155 DLAQQ--VVLSSYRAHA-AQVTCVAASPHKDSVFLSCSE--DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV 229 (344)
T ss_dssp ETTTT--EEEEEECCCS-SCEEEEEECSSCTTEEEEEET--TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE
T ss_pred ECCCC--cEEEEEcCcC-CceEEEEecCCCCCceeeecc--ccccccccccccceeeeeecceeeccceeeeecCCCCcc
Confidence 98876 3333443332 334467899999876665433 345888899887623333222221 224588877666
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcCCCCCcccccCCCc
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGK 311 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~ 311 (648)
+.....+ ..|.+.|+.+......+..+.. .+..+.+.+ ..+++....++ .+++|++.. +.+
T Consensus 230 l~sg~~d----g~v~~wd~~~~~~~~~~~~h~~--~v~~v~fsp~g~~~lasgs~D~--~i~vwd~~~--~~~------- 292 (344)
T 4gqb_B 230 FVFGDEN----GTVSLVDTKSTSCVLSSAVHSQ--CVTGLVFSPHSVPFLASLSEDC--SLAVLDSSL--SEL------- 292 (344)
T ss_dssp EEEEETT----SEEEEEESCC--CCEEEECCSS--CEEEEEECSSSSCCEEEEETTS--CEEEECTTC--CEE-------
T ss_pred eEEeccC----CcEEEEECCCCcEEEEEcCCCC--CEEEEEEccCCCeEEEEEeCCC--eEEEEECCC--CcE-------
Confidence 5554432 4677788876433332333333 355555554 34555666655 467777763 322
Q ss_pred eeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 312 SVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 312 ~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+.+......|..+.+++++..++.+.+.. .++..+++.+..
T Consensus 293 -~~~~~H~~~V~~v~~sp~~~~llas~s~D---~~v~~w~v~~~~ 333 (344)
T 4gqb_B 293 -FRSQAHRDFVRDATWSPLNHSLLTTVGWD---HQVVHHVVPTEP 333 (344)
T ss_dssp -EEECCCSSCEEEEEECSSSTTEEEEEETT---SCEEEEECCC--
T ss_pred -EEEcCCCCCEEEEEEeCCCCeEEEEEcCC---CeEEEEECCCCC
Confidence 12222222344455667777665444422 456667665543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-07 Score=95.43 Aligned_cols=201 Identities=11% Similarity=0.105 Sum_probs=124.9
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCC---CCceEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEIL---RPDKAWLH 156 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~---~~~~l~~~ 156 (648)
.+..+.|||||++|+++...+| .|+++|+.+++.... ........++|+||| .++........ ....|+.+
T Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~ 288 (433)
T 3bws_A 213 WSKILLYDPIRDLVYCSNWISE----DISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIY 288 (433)
T ss_dssp SEEEEEEETTTTEEEEEETTTT----EEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEE
T ss_pred CeeEEEEcCCCCEEEEEecCCC----cEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEE
Confidence 3567899999999877765444 799999999876542 222234569999999 77665543211 24579999
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFI 235 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~ 235 (648)
++.++. ........ .....+.|+|||+++++... ....|+++|+++++ .....+.... ....|+|+|+.|++
T Consensus 289 d~~~~~--~~~~~~~~--~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~ 361 (433)
T 3bws_A 289 SMDKEK--LIDTIGPP--GNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKK-VQKSIPVFDKPNTIALSPDGKYLYV 361 (433)
T ss_dssp ETTTTE--EEEEEEEE--ECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTE-EEEEEECSSSEEEEEECTTSSEEEE
T ss_pred ECCCCc--EEeeccCC--CCcceEEECCCCCEEEEEec--CCCEEEEEECCCCc-EEEEecCCCCCCeEEEcCCCCEEEE
Confidence 998762 22222211 13346789999999887643 34689999998876 3333222222 33569999998887
Q ss_pred EeccCCC----------CCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC--EEEEEEecCCeeEEEEEEcC
Q 006375 236 TRRSDEL----------FNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 236 ~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~~ 298 (648)
.....+. .+..|+++|+.+.. ....++... .+..+.+..+ .+++....+ ..+.+|+++
T Consensus 362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~-~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~d--~~i~v~~~~ 431 (433)
T 3bws_A 362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT-VKEFWEAGN--QPTGLDVSPDNRYLVISDFLD--HQIRVYRRD 431 (433)
T ss_dssp EECCCCCTTTCTTSCCSSCCEEEEEETTTTE-EEEEEECSS--SEEEEEECTTSCEEEEEETTT--TEEEEEEET
T ss_pred EecCCCccccccccccccceEEEEEECCCCc-EEEEecCCC--CCceEEEcCCCCEEEEEECCC--CeEEEEEec
Confidence 7654211 13589999987632 222444322 3556666554 444443334 367777765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.4e-07 Score=90.14 Aligned_cols=249 Identities=12% Similarity=0.072 Sum_probs=135.9
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCe-EEEEEEEECCCCCeee-c-----cccCccceeEEecCCeEEEEEeCCCCCCceEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDE-IYTVYVIDIETGTPVG-K-----PLVGVTASVEWAGNEALVYITMDEILRPDKAW 154 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e-~~~l~v~dl~~g~~~~-~-----~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~ 154 (648)
.+..++|||||++|+-..+..+.- ...+++++........ . ..+.....++|+||+.|+....+ ..|.
T Consensus 32 ~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~d-----g~v~ 106 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDS-----GAVE 106 (344)
T ss_dssp EEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETT-----SEEE
T ss_pred CEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECC-----CEEE
Confidence 477889999999998776543321 1244555432211110 0 01122345999999977644322 3477
Q ss_pred EEECCCCCCCcEEEEe-ecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEeecCCE
Q 006375 155 LHKLEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNH 232 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~dg~~ 232 (648)
++++.+++......+. .........+.|+|||++|+..+.+ ..|.++|+.+++....+......+. ..|++++..
T Consensus 107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d---~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 107 LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD---ICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC---CeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 8888877432222221 1222344578999999998754433 4588899988762233333333332 458899877
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcCCCCCcccccCCC
Q 006375 233 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGG 310 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~ 310 (648)
+++....+ ..|.+.|+..+.....+........+..+.+.. ..+++....++ .+.+|++.. +..+.
T Consensus 184 ~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg--~v~~wd~~~-~~~~~----- 251 (344)
T 4gqb_B 184 VFLSCSED----NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG--TVSLVDTKS-TSCVL----- 251 (344)
T ss_dssp EEEEEETT----SCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS--EEEEEESCC---CCE-----
T ss_pred ceeeeccc----cccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC--cEEEEECCC-CcEEE-----
Confidence 66655442 357777887643333222222223345566554 34555555555 577788874 22221
Q ss_pred ceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 311 KSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 311 ~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
. +......|..+.+++++..++++.+.. ..+..+|..+++
T Consensus 252 -~--~~~h~~~v~~v~fsp~g~~~lasgs~D---~~i~vwd~~~~~ 291 (344)
T 4gqb_B 252 -S--SAVHSQCVTGLVFSPHSVPFLASLSED---CSLAVLDSSLSE 291 (344)
T ss_dssp -E--EECCSSCEEEEEECSSSSCCEEEEETT---SCEEEECTTCCE
T ss_pred -E--EcCCCCCEEEEEEccCCCeEEEEEeCC---CeEEEEECCCCc
Confidence 1 112111244455566776555555432 468888998887
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.3e-07 Score=91.62 Aligned_cols=221 Identities=11% Similarity=-0.059 Sum_probs=124.6
Q ss_pred EEEEEECCCCCeeec-cccC---ccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCC----eEE
Q 006375 108 TVYVIDIETGTPVGK-PLVG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDI----YSL 178 (648)
Q Consensus 108 ~l~v~dl~~g~~~~~-~~~~---~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~----~~~ 178 (648)
+|+++|+++++.+.. .... ....++|+||| .++++.. ....|+.+++.++. ....+...... ...
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~----~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~ 85 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN----KSESLVKIDLVTGE--TLGRIDLSTPEERVKSLF 85 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET----TTTEEEEEETTTCC--EEEEEECCBTTEEEECTT
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC----CCCeEEEEECCCCC--eEeeEEcCCccccccccc
Confidence 799999999887643 2333 24569999999 6766543 23569999998763 22222211100 122
Q ss_pred EEEeCCCCcEEEEEEcc-------c--cccEEEEEECCCCCceeE-eeecccceeeeEeecCCEEEEEeccCCCCCcEEE
Q 006375 179 GLQASESKKFLFIASES-------K--ITRFVFYLDVSKPEELRV-LTPRVVGVDTAASHRGNHFFITRRSDELFNSELL 248 (648)
Q Consensus 179 ~~~~s~Dg~~l~~~~~~-------~--~~~~l~~~dl~~~~~~~~-l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~ 248 (648)
.+.++|||++|++.... . ....|+++|+++++ ... +..........|+|||++|++. + ..|+
T Consensus 86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~-~------~~i~ 157 (337)
T 1pby_B 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEAPRQITMLAWARDGSKLYGL-G------RDLH 157 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEECCSSCCCEEECTTSSCEEEE-S------SSEE
T ss_pred ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc-EEEEEeCCCCcceeEECCCCCEEEEe-C------CeEE
Confidence 56899999998886421 1 34789999998876 332 2222222335699999988877 2 2588
Q ss_pred EEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCe---------------------eEEEEEEcCCCCCccccc
Q 006375 249 ACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGL---------------------QKITTYRLPAVGEPLKSL 307 (648)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------~~l~v~~~~~~g~~~~~l 307 (648)
++|+++.. ....++.........+.+++..+++....++. ..+.++++.. +.+.
T Consensus 158 ~~d~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~--~~~~-- 232 (337)
T 1pby_B 158 VMDPEAGT-LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET--GEMA-- 232 (337)
T ss_dssp EEETTTTE-EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT--CCEE--
T ss_pred EEECCCCc-EeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC--CCce--
Confidence 88887632 22233322211122444454444332222111 1567777763 3211
Q ss_pred CCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 308 QGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 308 ~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
.+.+......+.++..++++..+++. -..++.+|+.+++.
T Consensus 233 ----~~~~~~~~~~~~~~~~s~dg~~l~~~------~~~v~~~d~~~~~~ 272 (337)
T 1pby_B 233 ----MREVRIMDVFYFSTAVNPAKTRAFGA------YNVLESFDLEKNAS 272 (337)
T ss_dssp ----EEEEEECSSCEEEEEECTTSSEEEEE------ESEEEEEETTTTEE
T ss_pred ----EeecCCCCCceeeEEECCCCCEEEEe------CCeEEEEECCCCcC
Confidence 11111111112234556778776655 26899999998873
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-06 Score=89.07 Aligned_cols=246 Identities=10% Similarity=0.009 Sum_probs=137.2
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..+.|||||++|+.... +| .|++||+.+++.... ........++|+||+ .++....+.......|..+++.
T Consensus 76 ~v~~~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGSA-DY----SIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp CEEEEEECTTSSEEEEEET-TT----EEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEeC-CC----eEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 5678899999999986643 34 799999999887643 233345569999999 6666554322233456677666
Q ss_pred CCCCCcEE----------EEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeecccce-eeeEe
Q 006375 160 ADQSNDIC----------LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGV-DTAAS 227 (648)
Q Consensus 160 ~~~~~~~~----------~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~~~-~~~~s 227 (648)
+....... +...........+.|+||+++|+.... ...|+++|+.+.. ....+......+ ...|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 227 (369)
T 3zwl_B 151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK---DGKISKYDVSNNYEYVDSIDLHEKSISDMQFS 227 (369)
T ss_dssp ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET---TSEEEEEETTTTTEEEEEEECCSSCEEEEEEC
T ss_pred CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC---CCEEEEEECCCCcEeEEEEecCCCceeEEEEC
Confidence 54321111 111111114456789999998876543 3579999998843 223333222222 34699
Q ss_pred ecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEe--CCEEEEEEecCC-----------eeEEEE
Q 006375 228 HRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGG-----------LQKITT 294 (648)
Q Consensus 228 ~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-----------~~~l~v 294 (648)
|++..|+..+.. ..|...|+.+.... ..+..... +..+.+. +..+++....++ ...+.+
T Consensus 228 ~~~~~l~~~~~d-----~~i~v~d~~~~~~~-~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (369)
T 3zwl_B 228 PDLTYFITSSRD-----TNSFLVDVSTLQVL-KKYETDCP--LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARF 299 (369)
T ss_dssp TTSSEEEEEETT-----SEEEEEETTTCCEE-EEEECSSC--EEEEEECSSSSEEEEEECCC-------------CEEEE
T ss_pred CCCCEEEEecCC-----ceEEEEECCCCcee-eeecCCCC--ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEE
Confidence 999987766543 36888888763322 23333332 3444444 445554443322 125677
Q ss_pred EEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 295 YRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 295 ~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+++.. +..+ ..+......+..+.+++++..+ ++.+. -+.+..+++.++.
T Consensus 300 ~d~~~-~~~~--------~~~~~~~~~v~~~~~s~~~~~l-~s~~~---dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 300 YHKIF-EEEI--------GRVQGHFGPLNTVAISPQGTSY-ASGGE---DGFIRLHHFEKSY 348 (369)
T ss_dssp EETTT-CCEE--------EEEECCSSCEEEEEECTTSSEE-EEEET---TSEEEEEEECHHH
T ss_pred EecCC-Ccch--------hheecccCcEEEEEECCCCCEE-EEEcC---CCeEEEEECcccc
Confidence 77663 1211 1111111224344555666633 33322 3567777766543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-06 Score=87.15 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=117.7
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
..+..+.++|+++++|-.. .+| +|++||+.+++..... .......++|+||| .|+.... ...+..++
T Consensus 81 ~~v~~~~~~~~~~~l~s~s-~D~----~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-----dg~v~i~~ 150 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSS-LDA----HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-----VGKVNIFG 150 (321)
T ss_dssp SCEEEEEECSSSSEEEEEE-TTS----EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-----TSEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEe-CCC----cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-----CCcEEEEE
Confidence 3466789999999877544 334 7999999998765421 12223459999999 6654322 34588888
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFIT 236 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~ 236 (648)
+.++. ....+... ......+.|+|||++|+..+.+ ..|+++|+.+++....+...... ....|+|+|+.|+..
T Consensus 151 ~~~~~--~~~~~~~~-~~~v~~~~~spdg~~lasg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~ 224 (321)
T 3ow8_A 151 VESGK--KEYSLDTR-GKFILSIAYSPDGKYLASGAID---GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA 224 (321)
T ss_dssp TTTCS--EEEEEECS-SSCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEE
T ss_pred cCCCc--eeEEecCC-CceEEEEEECCCCCEEEEEcCC---CeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEE
Confidence 88762 33333332 3445678999999998865443 46889999887622233322222 235699999876554
Q ss_pred eccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCC
Q 006375 237 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~ 299 (648)
+.. ..|.+.|+........+..+.. .+..+.+.++ ..++....++ .+.+|++..
T Consensus 225 s~d-----g~i~iwd~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~s~D~--~v~iwd~~~ 279 (321)
T 3ow8_A 225 SDD-----GYIKIYDVQHANLAGTLSGHAS--WVLNVAFCPDDTHFVSSSSDK--SVKVWDVGT 279 (321)
T ss_dssp CTT-----SCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTS--CEEEEETTT
T ss_pred cCC-----CeEEEEECCCcceeEEEcCCCC--ceEEEEECCCCCEEEEEeCCC--cEEEEeCCC
Confidence 442 3577778765332222332332 3555666544 2334444444 577888873
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.7e-06 Score=90.49 Aligned_cols=253 Identities=11% Similarity=0.027 Sum_probs=140.1
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEEC--CCCCeeec-cccCccceeEEec----CC-eEEEEEeCCCCCCceEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDI--ETGTPVGK-PLVGVTASVEWAG----NE-ALVYITMDEILRPDKAW 154 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl--~~g~~~~~-~~~~~~~~~~Wsp----Dg-~l~y~~~~~~~~~~~l~ 154 (648)
...+.+||||++|+.+.. +| .|.++|+ ++++.+.. ........++|+| || .++..... ...|.
T Consensus 181 ~~~v~~spdg~~l~v~~~-d~----~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~----~~~v~ 251 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGR-DA----RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW----PPQFA 251 (543)
T ss_dssp EEEEEECTTSCEEEEEET-TS----EEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE----SSEEE
T ss_pred cceEEECCCCCEEEEECC-CC----eEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEcc----CCeEE
Confidence 457889999999876653 33 7999999 77775532 2222234689999 99 55444332 34577
Q ss_pred EEECCCCCCCcEEEEeec----------CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCcee--Eeeecccce
Q 006375 155 LHKLEADQSNDICLYHEK----------DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR--VLTPRVVGV 222 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~--~l~~~~~~~ 222 (648)
.++..+.. ....+... .......+.+|+|++.++++. .....|+++|..+.+... .+.....-.
T Consensus 252 v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~--~~~g~i~vvd~~~~~~l~~~~i~~~~~~~ 327 (543)
T 1nir_A 252 IMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV--KETGKVLLVNYKDIDNLTVTSIGAAPFLH 327 (543)
T ss_dssp EEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEECTTSSSCEEEEEECCSSCC
T ss_pred EEeccccc--cceeecccCcccCccccccCCceEEEEECCCCCEEEEEE--CCCCeEEEEEecCCCcceeEEeccCcCcc
Confidence 88887762 22222211 011334678899998887654 345789999998765112 222111112
Q ss_pred eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcc-cceEEE-eCC-EEEEEEecCCeeEEEEEEcCC
Q 006375 223 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVK-LQDIQL-FID-HLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 223 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~-~l~~~~~~~~~~~l~v~~~~~ 299 (648)
...|+|||++|+...+.+ ..|.++|.++.. ....++...... -.+..+ .++ +-++.....+...+.+++.+.
T Consensus 328 ~~~~spdg~~l~va~~~~----~~v~v~D~~tg~-l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 328 DGGWDSSHRYFMTAANNS----NKVAVIDSKDRR-LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp CEEECTTSCEEEEEEGGG----TEEEEEETTTTE-EEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CceECCCCCEEEEEecCC----CeEEEEECCCCe-EEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence 356999999887665542 368888987632 222333211000 012222 332 444444443445788999885
Q ss_pred CCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCC-----CEEEEEECCCCcE
Q 006375 300 VGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTP-----PSVYDYDMDMGIS 357 (648)
Q Consensus 300 ~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P-----~~~~~~d~~~~~~ 357 (648)
.+.....+..-+.+..+.. ....+..++++..|++. ++..| ..+..+|..+++.
T Consensus 403 ~~~~~~~~~~v~~l~~~g~--~~~~v~~~pdg~~l~v~--~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 403 KNHPQYAWKKVAELQGQGG--GSLFIKTHPKSSHLYVD--TTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp TTCTTTBTSEEEEEECSCS--CCCCEECCTTCCEEEEC--CTTCSSHHHHTCEEEEETTCTTS
T ss_pred CCCchhcCeEEEEEEcCCC--CceEEEcCCCCCcEEEe--cCCCCCcccCceEEEEECCCCCC
Confidence 3221000100123332211 11124456788866543 33344 3799999998873
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.3e-09 Score=112.56 Aligned_cols=118 Identities=18% Similarity=0.084 Sum_probs=79.7
Q ss_pred CCCCcEEEEecCCCCCCCCCC-CchhHHHHHH-CCCEEEEEccCCC-CCCCh---hhhh-cccccCCCCcHhHHHHHHHH
Q 006375 403 DGSDPLLLYGYGSYEICNDPA-FNSSRLSLLD-RGFIFAIAQIRGG-GELGR---QWYE-NGKFLKKKNTFTDFIACAEY 475 (648)
Q Consensus 403 ~~~~P~vl~~hGg~~~~~~~~-~~~~~~~l~~-~G~~v~~~~~rG~-g~~g~---~~~~-~~~~~~~~~~~~D~~~~~~~ 475 (648)
+++.|+||++|||........ .......|+. .|++|+.+|||-+ -|+.. .+.. ..........+.|+.+|++|
T Consensus 138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al~w 217 (585)
T 1dx4_A 138 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRW 217 (585)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcccCCCCCCCCCCchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHHHH
Confidence 356899999999754333222 1112345665 6999999999942 22211 1100 00111222368999999999
Q ss_pred HHHcC---CCCCCeEEEEeeChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 006375 476 LIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFV 520 (648)
Q Consensus 476 l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~~~a~v~~~~~~ 520 (648)
+.++- ..||++|.|+|+|+||.+++.++... ..+|+++|+.+|..
T Consensus 218 v~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 218 LKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 99872 36999999999999999998877752 35899999998854
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.8e-06 Score=85.66 Aligned_cols=196 Identities=11% Similarity=0.081 Sum_probs=118.4
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++||.... +| .|++||+.+++..... -.+....++|+||+ .|+.... ...|..+++
T Consensus 34 ~v~~~~~s~~~~~l~~~~~-dg----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----dg~i~iwd~ 103 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSK-DS----SASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA-----DYSIKLWDV 103 (369)
T ss_dssp CEEEEEECTTSCEEEEEES-SS----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TTEEEEEET
T ss_pred eEEEEEEcCCCCEEEEEeC-CC----EEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEEC
Confidence 4678899999999987653 33 6899999998876421 12234569999999 5554332 235888899
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcc--ccccEEEEEECCCCC---ce--------eEeeeccc--c-e
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES--KITRFVFYLDVSKPE---EL--------RVLTPRVV--G-V 222 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~--~~~~~l~~~dl~~~~---~~--------~~l~~~~~--~-~ 222 (648)
.++ +....+. .......+.|+|++++++..... .....|+++|+.+.. .. ..+..... . .
T Consensus 104 ~~~--~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 104 SNG--QCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp TTC--CEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred CCC--cEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 876 3333333 23344578899999999876654 223577777776553 01 11111111 2 2
Q ss_pred eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcCC
Q 006375 223 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 223 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~ 299 (648)
...|+|+|+.|+..+.. ..|..+|+.........+... ...+..+.+.++. .++....++ .+.++++..
T Consensus 180 ~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~ 249 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDSIDLH-EKSISDMQFSPDLTYFITSSRDT--NSFLVDVST 249 (369)
T ss_dssp EEEECGGGCEEEEEETT-----SEEEEEETTTTTEEEEEEECC-SSCEEEEEECTTSSEEEEEETTS--EEEEEETTT
T ss_pred EEEEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEEEecC-CCceeEEEECCCCCEEEEecCCc--eEEEEECCC
Confidence 24589999877665543 478888887522222233222 2235666665542 233334443 678888874
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-06 Score=89.24 Aligned_cols=151 Identities=8% Similarity=0.028 Sum_probs=90.3
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
++.+++++++++-.. ..+ +|+++|+++++.+.. .... ....++|+||| .++++.. ....|+.+++.+
T Consensus 4 g~~~~~~~~~~v~~~-~~~----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~----~~~~i~~~d~~t 74 (349)
T 1jmx_B 4 GPALKAGHEYMIVTN-YPN----NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN----HYGDIYGIDLDT 74 (349)
T ss_dssp CCCCCTTCEEEEEEE-TTT----EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET----TTTEEEEEETTT
T ss_pred cccccCCCEEEEEeC-CCC----eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC----CCCcEEEEeCCC
Confidence 456788877655433 333 799999999886532 2333 24569999999 6655542 235699999887
Q ss_pred CCCCcEEEEeecCC-----CeEEEEEeCCCCcEEEEEEcc---------ccccEEEEEECCCCCc--eeEeeecccc-ee
Q 006375 161 DQSNDICLYHEKDD-----IYSLGLQASESKKFLFIASES---------KITRFVFYLDVSKPEE--LRVLTPRVVG-VD 223 (648)
Q Consensus 161 ~~~~~~~~~~~~~~-----~~~~~~~~s~Dg~~l~~~~~~---------~~~~~l~~~dl~~~~~--~~~l~~~~~~-~~ 223 (648)
+. .......... .....+.++|||++|++.... .....|+++|+++++. .......... ..
T Consensus 75 ~~--~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 152 (349)
T 1jmx_B 75 CK--NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYL 152 (349)
T ss_dssp TE--EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCC
T ss_pred Cc--EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccc
Confidence 62 2222221110 112356899999999887643 1136899999987541 1111111112 22
Q ss_pred eeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 224 TAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 224 ~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
..|+|||+ +|+..+ .|+++|+++
T Consensus 153 ~~~s~dg~-l~~~~~-------~i~~~d~~~ 175 (349)
T 1jmx_B 153 MRAADDGS-LYVAGP-------DIYKMDVKT 175 (349)
T ss_dssp EEECTTSC-EEEESS-------SEEEECTTT
T ss_pred eeECCCCc-EEEccC-------cEEEEeCCC
Confidence 34899998 666321 277777765
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=8.2e-09 Score=108.79 Aligned_cols=112 Identities=9% Similarity=0.003 Sum_probs=81.6
Q ss_pred CCCcEEEEecCCCCCCCCCCCch-hHHHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNS-SRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 481 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 481 (648)
...|+||++||..+.. ...|.. .+..|+++ ||.|+++|+||.|..... .... .-....+|+.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G~G~S~~~--~~~~--~~~~~~~dl~~li~~L~~~~g 142 (452)
T 1bu8_A 68 LDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRRGSRTEYT--QASY--NTRVVGAEIAFLVQVLSTEMG 142 (452)
T ss_dssp TTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHHHHSSCHH--HHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechhcccCchh--HhHh--hHHHHHHHHHHHHHHHHHhcC
Confidence 4468999999976544 233555 34666664 999999999998765421 1111 011234678888888875434
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
++.+++.++|||+||.+++.++.++|++++++|+..|..
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 567899999999999999999999999999999887653
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-08 Score=110.66 Aligned_cols=125 Identities=17% Similarity=0.184 Sum_probs=83.4
Q ss_pred EeEEEEEeeCccc---cCCCCcEEEEecCCCCCCCCC-CCchhHHHHHHC-CCEEEEEccCCCC-CCChhhhhcccccCC
Q 006375 389 IPICIVYRKNLVK---LDGSDPLLLYGYGSYEICNDP-AFNSSRLSLLDR-GFIFAIAQIRGGG-ELGRQWYENGKFLKK 462 (648)
Q Consensus 389 i~~~l~~~~~~~~---~~~~~P~vl~~hGg~~~~~~~-~~~~~~~~l~~~-G~~v~~~~~rG~g-~~g~~~~~~~~~~~~ 462 (648)
+.+.++.|+.. . .+++.|+||++|||....... .+.. ..|+.+ |++|+.+|||.+. |+... .......
T Consensus 112 L~l~v~~P~~~-~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~--~~la~~~~~vvv~~~YRl~~~Gfl~~---~~~~~~~ 185 (574)
T 3bix_A 112 LYLNIYVPTED-DIRDSGGPKPVMVYIHGGSYMEGTGNLYDG--SVLASYGNVIVITVNYRLGVLGFLST---GDQAAKG 185 (574)
T ss_dssp CEEEEEEEC---------CCEEEEEECCCSSSSSCCGGGSCC--HHHHHHHTCEEEEECCCCHHHHHCCC---SSSSCCC
T ss_pred CEEEEEECCCC-CcCCCCCCCcEEEEECCCcccCCCCCccCc--hhhhccCCEEEEEeCCcCcccccCcC---CCCCCCC
Confidence 44555667542 1 135689999999975443332 2332 456665 6999999999542 11100 0000112
Q ss_pred CCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhCC---CceeEEEecCCc
Q 006375 463 KNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVAAVPF 519 (648)
Q Consensus 463 ~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~~~a~v~~~~~ 519 (648)
...+.|..+|++|+.++ ...||++|.|+|.|+||.+++.++.... .+|+++|+.+|.
T Consensus 186 n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 186 NYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 24689999999999886 2369999999999999999988887543 579999998863
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-08 Score=100.67 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=78.8
Q ss_pred CCCcEEEEecCCCCCCCC----CCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc
Q 006375 404 GSDPLLLYGYGSYEICND----PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~----~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 479 (648)
++.|.||++||..+.... ..|......|.++||.|+.+|+||.|..... ....+++.+.++.+++.
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~l~~~L~~~G~~V~~~d~~g~g~s~~~----------~~~~~~l~~~i~~~l~~ 75 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGP----------NGRGEQLLAYVKTVLAA 75 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTTEESSTTHHHHHHHTTCCEEECCCCSSCCSSST----------TSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccchHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCCC----------CCCHHHHHHHHHHHHHH
Confidence 446789999997655421 3467777889999999999999987754211 23346666666665544
Q ss_pred CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 480 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
.+.+++.++||||||.++..++.++|+.++++|+.++.
T Consensus 76 --~~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p 113 (320)
T 1ys1_X 76 --TGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTP 113 (320)
T ss_dssp --HCCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --hCCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCC
Confidence 23478999999999999999999999999999988875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.5e-06 Score=84.79 Aligned_cols=192 Identities=11% Similarity=0.074 Sum_probs=118.0
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc---cCccceeEEecCC-eEEEEEeCCCCCCceEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL---VGVTASVEWAGNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~---~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~ 155 (648)
..+..+.|||||++|+.... +| .|+++|+.+++.... .. ......++|+||+ .++. ... ...|+.
T Consensus 98 ~~v~~~~~~~~~~~l~~~~~-d~----~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~----dg~v~~ 167 (337)
T 1gxr_A 98 NYIRSCKLLPDGCTLIVGGE-AS----TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS-CCS----DGNIAV 167 (337)
T ss_dssp SBEEEEEECTTSSEEEEEES-SS----EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEE-EET----TSCEEE
T ss_pred CcEEEEEEcCCCCEEEEEcC-CC----cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEE-EeC----CCcEEE
Confidence 35778999999999987753 23 799999998873221 11 2224569999999 5554 432 234888
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEE
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFF 234 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~ 234 (648)
+++.++ +....+... ......+.|+||+++|+..+. ...|+++|+.+++ .......... ....|+|+|+.|+
T Consensus 168 ~d~~~~--~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~ 240 (337)
T 1gxr_A 168 WDLHNQ--TLVRQFQGH-TDGASCIDISNDGTKLWTGGL---DNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp EETTTT--EEEEEECCC-SSCEEEEEECTTSSEEEEEET---TSEEEEEETTTTE-EEEEEECSSCEEEEEECTTSSEEE
T ss_pred EeCCCC--ceeeeeecc-cCceEEEEECCCCCEEEEEec---CCcEEEEECCCCc-eEeeecCCCceEEEEECCCCCEEE
Confidence 898876 233333332 233457889999999886543 3579999998876 3322222222 2346899999887
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCC
Q 006375 235 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~ 299 (648)
..+.. ..|..+++.+.. ...+..+. ..+..+.+.++ .+++....++ .+.+|++..
T Consensus 241 ~~~~~-----~~i~~~~~~~~~-~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg--~i~~~~~~~ 296 (337)
T 1gxr_A 241 VGMES-----SNVEVLHVNKPD-KYQLHLHE--SCVLSLKFAYCGKWFVSTGKDN--LLNAWRTPY 296 (337)
T ss_dssp EEETT-----SCEEEEETTSSC-EEEECCCS--SCEEEEEECTTSSEEEEEETTS--EEEEEETTT
T ss_pred EEcCC-----CcEEEEECCCCC-eEEEcCCc--cceeEEEECCCCCEEEEecCCC--cEEEEECCC
Confidence 76553 357788887632 22233232 23566666654 2333444444 678888874
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=4.6e-07 Score=91.69 Aligned_cols=201 Identities=13% Similarity=0.160 Sum_probs=109.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCC---eeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT---PVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~---~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
....+.|||||++|+++...+| .|+++|+..+. .... ........++|+||| .++..... ...|+++
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----~~~v~~~ 156 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAG----NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK----QDRICLF 156 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTT----EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG----GTEEEEE
T ss_pred CCcEEEEcCCCCEEEEEecCCC----eEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC----CCEEEEE
Confidence 3457889999999888765444 57888884332 2221 111224459999999 66554312 2458888
Q ss_pred ECCCCCCCcEE----EEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCC--CCceeEee--e-cccc------
Q 006375 157 KLEADQSNDIC----LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK--PEELRVLT--P-RVVG------ 221 (648)
Q Consensus 157 ~l~~~~~~~~~----~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~--~~~~~~l~--~-~~~~------ 221 (648)
++.+.. +... ............+.|+|||+++++... ....+.+++++. ++ .+.+. . ...+
T Consensus 157 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~--~~~~i~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~ 232 (343)
T 1ri6_A 157 TVSDDG-HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGN-IECVQTLDMMPENFSDTRW 232 (343)
T ss_dssp EECTTS-CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSC-CEEEEEEECSCTTCCSCCC
T ss_pred EecCCC-ceeeecccccccCCCCCcceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCc-EEEEeeccccCccccccCC
Confidence 887621 1111 122222223346789999999887643 345788888853 43 32211 1 1111
Q ss_pred -eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC-CCccee--EecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEE
Q 006375 222 -VDTAASHRGNHFFITRRSDELFNSELLACPVDN-TSETTV--LIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTY 295 (648)
Q Consensus 222 -~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~ 295 (648)
....|+|+|+.||+.... ...|.+++++. .+..+. .++.... +..+.+.+ +.+++....+ ..+.++
T Consensus 233 ~~~i~~s~dg~~l~v~~~~----~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~--~~v~v~ 304 (343)
T 1ri6_A 233 AADIHITPDGRHLYACDRT----ASLITVFSVSEDGSVLSKEGFQPTETQ--PRGFNVDHSGKYLIAAGQKS--HHISVY 304 (343)
T ss_dssp EEEEEECTTSSEEEEEETT----TTEEEEEEECTTSCCEEEEEEEECSSS--CCCEEECTTSSEEEEECTTT--CEEEEE
T ss_pred ccceEECCCCCEEEEEecC----CCEEEEEEEcCCCCceEEeeeecCCCc--cceEEECCCCCEEEEecCCC--CeEEEE
Confidence 125699999988766543 23566666652 122222 2332222 55566655 4455444333 356666
Q ss_pred EcCCCCC
Q 006375 296 RLPAVGE 302 (648)
Q Consensus 296 ~~~~~g~ 302 (648)
+++...+
T Consensus 305 ~~d~~~g 311 (343)
T 1ri6_A 305 EIVGEQG 311 (343)
T ss_dssp EEETTTT
T ss_pred EEcCCCc
Confidence 5553333
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=107.10 Aligned_cols=112 Identities=12% Similarity=-0.011 Sum_probs=80.7
Q ss_pred CCCcEEEEecCCCCCCCCCCCch-hHHHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNS-SRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 481 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 481 (648)
...|+||++||..+.. ...|.. .+..|+++ ||.|+++|+||+|...... ... .-....+|+.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~G~S~~~~--~~~--~~~~~~~dl~~~i~~L~~~~g 142 (452)
T 1w52_X 68 SSRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSSGAKAEYTQ--AVQ--NIRIVGAETAYLIQQLLTELS 142 (452)
T ss_dssp TTSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHHHHTSCHHH--HHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEecccccccccHH--HHH--hHHHHHHHHHHHHHHHHHhcC
Confidence 4468999999965543 233554 44666665 9999999999987654211 111 001234677788888875433
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
++.+++.++|||+||.+++.++.++|++++++|+..|..
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 143 YNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 457899999999999999999999999999999887753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3e-06 Score=96.96 Aligned_cols=238 Identities=8% Similarity=0.021 Sum_probs=138.9
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-c-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++||.... +| .|.|||+.+++.... . -.+....++|+||| .|+.... ...|..+++
T Consensus 15 ~v~~i~~sp~~~~la~~~~-~g----~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~ 84 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLY-SG----RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-----DFRIRVFNY 84 (814)
T ss_dssp CEEEEEECSSSSEEEEEET-TS----EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-----TSEEEEEET
T ss_pred ceEEEEECCCCCEEEEEeC-CC----EEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC-----CCeEEEEEC
Confidence 4678899999999998863 34 799999999876542 1 22335569999999 6665443 245888898
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeecccce-eeeEee-cCCEEEE
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVGV-DTAASH-RGNHFFI 235 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~~~-~~~~s~-dg~~l~~ 235 (648)
.++ +....+... ......+.|+|||++|+..+. ...|.++|+.++. ....+......+ ...|+| ++..|+.
T Consensus 85 ~~~--~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 85 NTG--EKVVDFEAH-PDYIRSIAVHPTKPYVLSGSD---DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp TTC--CEEEEEECC-SSCEEEEEECSSSSEEEEEET---TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred CCC--cEEEEEecC-CCCEEEEEEeCCCCEEEEEcC---CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 876 333334333 334557899999999875443 3568888888764 122233222222 345898 6666555
Q ss_pred EeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--C-EEEEEEecCCeeEEEEEEcCCCCCcccccCCCce
Q 006375 236 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--D-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKS 312 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~ 312 (648)
.+.. ..|...++.+..... .+.......+..+.+.. + ..++....++ .+.+|++.. +..+. .
T Consensus 159 ~~~d-----g~v~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~-~~~~~------~ 223 (814)
T 3mkq_A 159 GCLD-----RTVKVWSLGQSTPNF-TLTTGQERGVNYVDYYPLPDKPYMITASDDL--TIKIWDYQT-KSCVA------T 223 (814)
T ss_dssp EETT-----SEEEEEETTCSSCSE-EEECCCTTCCCEEEECCSTTCCEEEEECTTS--EEEEEETTT-TEEEE------E
T ss_pred EeCC-----CeEEEEECCCCccee-EEecCCCCCEEEEEEEECCCCCEEEEEeCCC--EEEEEECCC-CcEEE------E
Confidence 4443 468888886533332 22222222345555543 3 3344444444 678888763 22111 1
Q ss_pred eecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 313 VEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 313 i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+......+..+.++++++.+. +.+ .-+.++.+|+.+++
T Consensus 224 --~~~~~~~v~~~~~~~~~~~l~-~~~---~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 224 --LEGHMSNVSFAVFHPTLPIII-SGS---EDGTLKIWNSSTYK 261 (814)
T ss_dssp --EECCSSCEEEEEECSSSSEEE-EEE---TTSCEEEEETTTCS
T ss_pred --EcCCCCCEEEEEEcCCCCEEE-EEe---CCCeEEEEECCCCc
Confidence 111111233345566666433 332 23568888888776
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.3e-08 Score=99.09 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=76.3
Q ss_pred CCCcEEEEecCCCCCCC---CCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcC
Q 006375 404 GSDPLLLYGYGSYEICN---DPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 480 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~---~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 480 (648)
++.|.||++||..+... ...|......|.++||.|+.+|+||.|... ...+++.+.++.+++.
T Consensus 5 ~~~~~vvlvHG~~~~~~~~~~~~~~~~~~~L~~~G~~v~~~d~~g~g~s~-------------~~~~~~~~~i~~~~~~- 70 (285)
T 1ex9_A 5 QTKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDTSE-------------VRGEQLLQQVEEIVAL- 70 (285)
T ss_dssp CCSSCEEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCSSSCHH-------------HHHHHHHHHHHHHHHH-
T ss_pred CCCCeEEEeCCCCCCccccccccHHHHHHHHHhCCCEEEEEeCCCCCCch-------------hhHHHHHHHHHHHHHH-
Confidence 44678999999766532 235667778889999999999999866431 1234555555555543
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 481 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 481 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
.+.+++.++||||||.++..++.++|+.++++|+.++.
T Consensus 71 -~~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p 108 (285)
T 1ex9_A 71 -SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp -HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -hCCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCC
Confidence 23468999999999999999999999999999988874
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.73 E-value=9.7e-07 Score=90.48 Aligned_cols=158 Identities=9% Similarity=0.066 Sum_probs=86.9
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECC--CC----C-ee------eccc--cCccceeEEecCC-eEEEEEeCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE--TG----T-PV------GKPL--VGVTASVEWAGNE-ALVYITMDEI 147 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~--~g----~-~~------~~~~--~~~~~~~~WspDg-~l~y~~~~~~ 147 (648)
..+.|||||++|+++....+ .|++++++ ++ + .. .... ......++|+||| .+|+...
T Consensus 158 ~~~~~spdg~~l~~~~~~~~----~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--- 230 (361)
T 3scy_A 158 HCVRITPDGKYLLADDLGTD----QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--- 230 (361)
T ss_dssp EEEEECTTSSEEEEEETTTT----EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET---
T ss_pred eEEEECCCCCEEEEEeCCCC----EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC---
Confidence 45899999999887654333 45555554 44 2 11 1111 1123459999999 5554432
Q ss_pred CCCceEEEEECCCCCCCcEEEEee---cC-CCeEEEEEeCCCCcEEEEEEcc-ccccEEEEEECCCCCceeEeeecc---
Q 006375 148 LRPDKAWLHKLEADQSNDICLYHE---KD-DIYSLGLQASESKKFLFIASES-KITRFVFYLDVSKPEELRVLTPRV--- 219 (648)
Q Consensus 148 ~~~~~l~~~~l~~~~~~~~~~~~~---~~-~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~dl~~~~~~~~l~~~~--- 219 (648)
....|..+++.++. ...+... .. ......+.|||||++|++.... ...-.+|.++..+++ .+.+..-.
T Consensus 231 -~~~~v~v~~~~~g~--~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~-~~~~~~~~~g~ 306 (361)
T 3scy_A 231 -IGGTVIAFRYADGM--LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT-LTKVGYQLTGI 306 (361)
T ss_dssp -TTCEEEEEEEETTE--EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC-EEEEEEEECSS
T ss_pred -CCCeEEEEEecCCc--eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc-EEEeeEecCCC
Confidence 22347777776542 1112111 11 1123467899999998765433 223344444444555 44332211
Q ss_pred cceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 220 VGVDTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 220 ~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
.-....|+|||++||+.... .....++.+|.++
T Consensus 307 ~~~~~~~spdg~~l~~~~~~--~~~v~v~~~d~~~ 339 (361)
T 3scy_A 307 HPRNFIITPNGKYLLVACRD--TNVIQIFERDQAT 339 (361)
T ss_dssp CCCEEEECTTSCEEEEEETT--TTEEEEEEECTTT
T ss_pred CCceEEECCCCCEEEEEECC--CCCEEEEEEECCC
Confidence 11235699999988776643 2345677778765
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.4e-08 Score=96.22 Aligned_cols=104 Identities=14% Similarity=0.001 Sum_probs=75.2
Q ss_pred CCCcEEEEecCCCCCCCCCCCc-hhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFN-SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYC 482 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 482 (648)
+..+.||++||..+.. ...|. .....|.++||.|+.+|++|.|..... ...+++.+.++++.+.-
T Consensus 63 ~~~~pVVLvHG~~~~~-~~~w~~~l~~~L~~~Gy~V~a~DlpG~G~~~~~-----------~~~~~la~~I~~l~~~~-- 128 (316)
T 3icv_A 63 SVSKPILLVPGTGTTG-PQSFDSNWIPLSAQLGYTPCWISPPPFMLNDTQ-----------VNTEYMVNAITTLYAGS-- 128 (316)
T ss_dssp BCSSEEEEECCTTCCH-HHHHTTTHHHHHHHTTCEEEEECCTTTTCSCHH-----------HHHHHHHHHHHHHHHHT--
T ss_pred CCCCeEEEECCCCCCc-HHHHHHHHHHHHHHCCCeEEEecCCCCCCCcHH-----------HHHHHHHHHHHHHHHHh--
Confidence 3456799999965432 12354 556788889999999999987632111 12467778888877652
Q ss_pred CCCeEEEEeeChhHHHHHHHHhhC---CCceeEEEecCCccc
Q 006375 483 TKEKLCIEGRSAGGLLIGAVLNMR---PDLFKAAVAAVPFVD 521 (648)
Q Consensus 483 d~~~i~i~G~S~GG~l~~~~~~~~---p~~~~a~v~~~~~~d 521 (648)
..+++.++||||||.++..++.++ +++++.+|+.+|...
T Consensus 129 g~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 129 GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred CCCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 237899999999999997777765 589999999888643
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-06 Score=87.27 Aligned_cols=194 Identities=14% Similarity=0.075 Sum_probs=110.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-cc-------------------CccceeEEecCCeEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LV-------------------GVTASVEWAGNEALVY 141 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~-------------------~~~~~~~WspDg~l~y 141 (648)
.+..++|||||++||...+ + .+.++++.+|+..... .. .....++|+|||.+++
T Consensus 66 ~V~~v~fspdg~~la~g~~--~----~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCN--K----TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp CCCEEEECTTSSEEEEECB--S----CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred EEEEEEECCCCCEEEEEcC--C----cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 3457899999999997643 2 5788899888764211 00 0134689999994434
Q ss_pred EEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc
Q 006375 142 ITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG 221 (648)
Q Consensus 142 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~ 221 (648)
+... ...|.++++.++ +....+..+ ......+.|+|||++|+..+. +..|.++|+.+++ ..........
T Consensus 140 s~~~----d~~i~iwd~~~~--~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~---d~~v~iwd~~~~~-~~~~~~~~~~ 208 (393)
T 1erj_A 140 TGAE----DRLIRIWDIENR--KIVMILQGH-EQDIYSLDYFPSGDKLVSGSG---DRTVRIWDLRTGQ-CSLTLSIEDG 208 (393)
T ss_dssp EEET----TSCEEEEETTTT--EEEEEECCC-SSCEEEEEECTTSSEEEEEET---TSEEEEEETTTTE-EEEEEECSSC
T ss_pred EEcC----CCeEEEEECCCC--cEEEEEccC-CCCEEEEEEcCCCCEEEEecC---CCcEEEEECCCCe-eEEEEEcCCC
Confidence 4432 234888888775 333344433 233457899999998875443 3568888998876 3322222222
Q ss_pred -eeeeEee-cCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEec-----CCCCcccceEEEeCCE-EEEEEecCCeeEEE
Q 006375 222 -VDTAASH-RGNHFFITRRSDELFNSELLACPVDNTSETTVLIP-----HRESVKLQDIQLFIDH-LAVYEREGGLQKIT 293 (648)
Q Consensus 222 -~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~ 293 (648)
....++| +|+.|+..+.. ..|...|+.+......+.. ......+..+.+.++. .++....++ .+.
T Consensus 209 v~~~~~~~~~~~~l~~~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~--~v~ 281 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR--SVK 281 (393)
T ss_dssp EEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS--EEE
T ss_pred cEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC--EEE
Confidence 2345888 67766554443 3466677765322211110 1112235566665542 334444444 577
Q ss_pred EEEcCC
Q 006375 294 TYRLPA 299 (648)
Q Consensus 294 v~~~~~ 299 (648)
+|++..
T Consensus 282 ~wd~~~ 287 (393)
T 1erj_A 282 LWNLQN 287 (393)
T ss_dssp EEEC--
T ss_pred EEECCC
Confidence 777763
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.6e-06 Score=86.50 Aligned_cols=161 Identities=9% Similarity=0.022 Sum_probs=89.6
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECC-CCCeeec-c--ccCccceeEEecCC-eE-EEEEeCC-----CC---
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE-TGTPVGK-P--LVGVTASVEWAGNE-AL-VYITMDE-----IL--- 148 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~-~g~~~~~-~--~~~~~~~~~WspDg-~l-~y~~~~~-----~~--- 148 (648)
...+.+||||++|+.+.. . .|.+++++ +|+.... . ..+....++|+||| .+ +|+.... .+
T Consensus 42 ~~~~a~spdg~~l~~~~~-~-----~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAM-K-----KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CSEEEECTTSSEEEEEEB-T-----EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CcEEEECCCCCEEEEEcc-c-----eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 346789999998864433 2 68888886 7765422 1 11323348899999 53 4443200 00
Q ss_pred -CCceEEEEECCCCCCCcEEE--EeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECC-CCCceeEeeec-----c
Q 006375 149 -RPDKAWLHKLEADQSNDICL--YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS-KPEELRVLTPR-----V 219 (648)
Q Consensus 149 -~~~~l~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~-~~~~~~~l~~~-----~ 219 (648)
....+..+++.........+ +..........+.|||||++|++.. .+...|++++++ +++ ...+..- .
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~--~~~~~v~~~~~~~~g~-~~~~~~~~~~~~g 192 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD--LTANKLWTHRKLASGE-VELVGSVDAPDPG 192 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTSC-EEEEEEEECSSTT
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc--CCCCEEEEEEECCCCC-EEEeeeEecCCCC
Confidence 22345666665321111111 1111223445788999999987543 234689999988 665 4333211 1
Q ss_pred cc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 220 VG-VDTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 220 ~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
.+ ....|+|||++||+.... .....++.++.++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~--~~~v~v~~~~~~~ 226 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEA--GNRICEYVIDPAT 226 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTT
T ss_pred CCCCEeEECCCCCEEEEEECC--CCeEEEEEEeCCC
Confidence 12 234699999988776543 2234555555433
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.5e-07 Score=91.44 Aligned_cols=115 Identities=15% Similarity=0.209 Sum_probs=72.7
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccC-------ccceeEEecCC-eEEEEEeC-------CC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG-------VTASVEWAGNE-ALVYITMD-------EI 147 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~-------~~~~~~WspDg-~l~y~~~~-------~~ 147 (648)
..+.|||||++++++....+ +|+++|+++++.+.. .... ....++|+||| .+++...+ ..
T Consensus 46 ~~~~~s~dg~~~~v~~~~~~----~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 46 GTAMMAPDNRTAYVLNNHYG----DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp CEEEECTTSSEEEEEETTTT----EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ceeEECCCCCEEEEEeCCCC----cEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccc
Confidence 46789999998877764433 799999999886532 2221 13458999999 77665532 00
Q ss_pred CCCceEEEEECCCCCCC-cEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 148 LRPDKAWLHKLEADQSN-DICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 148 ~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
.....|+.+++.++... ....+..+ .....+.++|||+ +++. . .+|+++|+.+++
T Consensus 122 ~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~-l~~~-~----~~i~~~d~~~~~ 177 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDGS-LYVA-G----PDIYKMDVKTGK 177 (349)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTSC-EEEE-S----SSEEEECTTTCC
T ss_pred cCCCeEEEEECCCccccceeeeccCC--CcccceeECCCCc-EEEc-c----CcEEEEeCCCCc
Confidence 11246999998874211 12223222 2233567999999 6653 1 238999988776
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-05 Score=80.20 Aligned_cols=249 Identities=8% Similarity=0.035 Sum_probs=136.4
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
...++.|+|||+ |.++.... ..|+++|+++++..... .......++|+|||.+++...........|++++..
T Consensus 46 ~~~~~~~~~~g~-l~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 46 QLEGLNFDRQGQ-LFLLDVFE----GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp CEEEEEECTTSC-EEEEETTT----CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred cccCcEECCCCC-EEEEECCC----CEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC
Confidence 346889999999 43333222 37999999998865422 223345699999997766554321223569999887
Q ss_pred CCCCCcEEEEeec-CCCeEEEEEeCCCCcEEEEEEcc----ccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEE
Q 006375 160 ADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASES----KITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHF 233 (648)
Q Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~s~Dg~~l~~~~~~----~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l 233 (648)
++. ...+.... ......++.++|||+.++ .... .....||++|.++++ .+.+...... ....+++||+.|
T Consensus 121 ~~~--~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~~dg~~l 196 (333)
T 2dg1_A 121 GDN--LQDIIEDLSTAYCIDDMVFDSKGGFYF-TDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVL 196 (333)
T ss_dssp SCS--CEEEECSSSSCCCEEEEEECTTSCEEE-EECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEE
T ss_pred CCE--EEEEEccCccCCcccceEECCCCCEEE-EeccccccCCCceEEEEeCCCCE-EEEeecCCCcccceEECCCCCEE
Confidence 762 22233211 122344678999997544 3322 124689999988776 5555432222 234589999988
Q ss_pred EEEeccCCCCCcEEEEEeCCCC-Ccce-----eEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcCCCCCcccc
Q 006375 234 FITRRSDELFNSELLACPVDNT-SETT-----VLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPAVGEPLKS 306 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~~g~~~~~ 306 (648)
|+.... +..|++++++.. .... ..........+.++.++.+. +++....+ ..|.+++.+ +....
T Consensus 197 ~v~~~~----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~--~~v~~~d~~--g~~~~- 267 (333)
T 2dg1_A 197 WVTETT----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ--GRVLVFNKR--GYPIG- 267 (333)
T ss_dssp EEEEGG----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT--TEEEEECTT--SCEEE-
T ss_pred EEEeCC----CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC--CEEEEECCC--CCEEE-
Confidence 887653 247888887531 1111 01111111235566776654 44443332 356777654 44222
Q ss_pred cCCCceeecCCCe-e---eeeCCCCcccccEEEEEEeeC--CCCCEEEEEECC
Q 006375 307 LQGGKSVEFIDPV-Y---SIDPSESVFSSRILRFHYSSL--RTPPSVYDYDMD 353 (648)
Q Consensus 307 l~~~~~i~~~~~~-~---~v~~~~~~~~~~~l~~~~ss~--~~P~~~~~~d~~ 353 (648)
.+..+... . .+..+.++++++.|++..+.- .....+|++++.
T Consensus 268 -----~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 268 -----QILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp -----EEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred -----EEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 22222110 0 111223345666676665542 234578887764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-05 Score=81.61 Aligned_cols=226 Identities=9% Similarity=0.021 Sum_probs=127.0
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQS 163 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~ 163 (648)
.++.|+||++.|.|+-...+ .|+++|+++++......+.....+.|+|||.+++... ..|++++..++.
T Consensus 52 egp~~~~~~~~l~~~d~~~~----~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~------~gl~~~d~~~g~- 120 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILER----ELHELHLASGRKTVHALPFMGSALAKISDSKQLIASD------DGLFLRDTATGV- 120 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGT----EEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEET------TEEEEEETTTCC-
T ss_pred cCCeEeCCCCEEEEEECCCC----EEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEEC------CCEEEEECCCCc-
Confidence 37899999888887754433 7999999988765433344445689999996655441 249999987762
Q ss_pred CcEEEEeecC---CCeEEEEEeCCCCcEEEEEEcc----ccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEE
Q 006375 164 NDICLYHEKD---DIYSLGLQASESKKFLFIASES----KITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFI 235 (648)
Q Consensus 164 ~~~~~~~~~~---~~~~~~~~~s~Dg~~l~~~~~~----~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~ 235 (648)
...+..... .....++.++|||+.. +.... .....||+++ +++ .+.+...... ....|++||+.||+
T Consensus 121 -~~~~~~~~~~~~~~~~~~i~~d~~G~l~-v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 121 -LTLHAELESDLPGNRSNDGRMHPSGALW-IGTMGRKAETGAGSIYHVA--KGK-VTKLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp -EEEEECSSTTCTTEEEEEEEECTTSCEE-EEEEETTCCTTCEEEEEEE--TTE-EEEEEEEESSEEEEEECTTSCEEEE
T ss_pred -EEEEeeCCCCCCCCCCCCEEECCCCCEE-EEeCCCcCCCCceEEEEEe--CCc-EEEeeCCCcccCCeEEcCCCCEEEE
Confidence 222322111 1234467899999854 43322 1346899999 454 4444332221 23458999999888
Q ss_pred EeccCCCCCcEEEEEeCC--CC-Cc--ceeEec-CCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcCCCCCcccccC
Q 006375 236 TRRSDELFNSELLACPVD--NT-SE--TTVLIP-HRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPAVGEPLKSLQ 308 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~--~~-~~--~~~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~~g~~~~~l~ 308 (648)
.... ..+|++++++ ++ .. .+.+.. ......+.++.++.+. +++....+ ..|.+++.+ +..+
T Consensus 196 ~~~~----~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~--~~v~~~d~~--g~~~---- 263 (326)
T 2ghs_A 196 VDTK----VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE--GAVDRYDTD--GNHI---- 263 (326)
T ss_dssp EETT----TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT--TEEEEECTT--CCEE----
T ss_pred EECC----CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC--CEEEEECCC--CCEE----
Confidence 7543 2478888875 32 11 121211 1112235567776654 44443322 356666653 4422
Q ss_pred CCceeecCCCeeeeeCCCCc-ccccEEEEEEeeC
Q 006375 309 GGKSVEFIDPVYSIDPSESV-FSSRILRFHYSSL 341 (648)
Q Consensus 309 ~~~~i~~~~~~~~v~~~~~~-~~~~~l~~~~ss~ 341 (648)
..+.+|.. .+..+.++ ++++.+++.....
T Consensus 264 --~~i~~~~~--~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 264 --ARYEVPGK--QTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp --EEEECSCS--BEEEEEEESTTSCEEEEEEBCT
T ss_pred --EEEECCCC--CcEEEEEecCCCCEEEEEecCC
Confidence 23334332 12223333 4566666665443
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-06 Score=87.19 Aligned_cols=190 Identities=15% Similarity=0.178 Sum_probs=114.0
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec--cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
+..+.|||||++||.... .| .|.++++++++.... ........++|+||| .|+....+ ..|..+++.
T Consensus 125 ~~~~~~spdg~~l~~g~~-dg----~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~d-----g~i~iwd~~ 194 (321)
T 3ow8_A 125 AWTLAFSPDSQYLATGTH-VG----KVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAID-----GIINIFDIA 194 (321)
T ss_dssp CCCEEECTTSSEEEEECT-TS----EEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEETT
T ss_pred EEEEEECCCCCEEEEEcC-CC----cEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCC-----CeEEEEECC
Confidence 446899999999987643 23 789999999876532 112234569999999 66544332 348888988
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEEec
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRR 238 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~~ 238 (648)
++ +....+.... .....+.|+|||++|+..+. +..|.++|+.+++....+......+ ...|+|+|+.|+..+.
T Consensus 195 ~~--~~~~~~~~h~-~~v~~l~~spd~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 195 TG--KLLHTLEGHA-MPIRSLTFSPDSQLLVTASD---DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp TT--EEEEEECCCS-SCCCEEEECTTSCEEEEECT---TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CC--cEEEEEcccC-CceeEEEEcCCCCEEEEEcC---CCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 76 2233333322 22346789999998875433 3458889998876222333333322 3469999997765554
Q ss_pred cCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEc
Q 006375 239 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRL 297 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~ 297 (648)
. ..|.+.|+.+......+..+.. .+..+.+.++ ..++....++ .+.+|+.
T Consensus 269 D-----~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~~d~--~i~vwd~ 319 (321)
T 3ow8_A 269 D-----KSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDDQ--EIHIYDC 319 (321)
T ss_dssp T-----SCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTC--CEEEEEC
T ss_pred C-----CcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEeCCC--eEEEEeC
Confidence 3 3577778865332222333332 3566666654 2344444554 4566664
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.69 E-value=9.4e-06 Score=84.71 Aligned_cols=197 Identities=7% Similarity=0.080 Sum_probs=115.5
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-c-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
-.+..+.|||||++|+.... +| .|++||+.+++.... . -......++|+||+ .|+ +...+ ..|..++
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~-d~----~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d----~~v~iwd 209 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQ-DM----QLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLD----GTIRLWE 209 (420)
T ss_dssp SCEEEEEECTTSSEEEEEET-TS----EEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEE-EEETT----SCEEEEE
T ss_pred CccEEEEECCCCCEEEEEeC-CC----eEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEE-EEcCC----CcEEEeE
Confidence 45778999999998886543 33 799999998876532 1 12334569999999 565 44322 2477888
Q ss_pred CCCCCCCcEEEEeecC--C---------------------CeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeE
Q 006375 158 LEADQSNDICLYHEKD--D---------------------IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV 214 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~--~---------------------~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~ 214 (648)
+.++ +....+.... . .....+.|+|||++|+..+. ...|.++|+.+++....
T Consensus 210 ~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~ 284 (420)
T 3vl1_A 210 CGTG--TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV---SGVITVHNVFSKEQTIQ 284 (420)
T ss_dssp TTTT--EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET---TSCEEEEETTTCCEEEE
T ss_pred CCCC--ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC---CCeEEEEECCCCceeEE
Confidence 8765 2233332211 0 11113467899999876543 34588999988762222
Q ss_pred eeec-ccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCc-ceeEecCCCCcccceEEEeCCEEEEEEecCCeeE
Q 006375 215 LTPR-VVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSE-TTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQK 291 (648)
Q Consensus 215 l~~~-~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 291 (648)
+... ...+ ...|+|+|..++++...+ ..|...|+..... ...+..+. ...+..+.+..+.+++....++ .
T Consensus 285 ~~~~~~~~v~~~~~~~~~~~~l~~g~~d----g~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~s~~~d~--~ 357 (420)
T 3vl1_A 285 LPSKFTCSCNSLTVDGNNANYIYAGYEN----GMLAQWDLRSPECPVGEFLINE-GTPINNVYFAAGALFVSSGFDT--S 357 (420)
T ss_dssp ECCTTSSCEEEEEECSSCTTEEEEEETT----SEEEEEETTCTTSCSEEEEEST-TSCEEEEEEETTEEEEEETTTE--E
T ss_pred cccccCCCceeEEEeCCCCCEEEEEeCC----CeEEEEEcCCCcCchhhhhccC-CCCceEEEeCCCCEEEEecCCc--c
Confidence 2221 2222 346999998444443332 4788889876433 22233322 2235555555556666655554 5
Q ss_pred EEEEEcCC
Q 006375 292 ITTYRLPA 299 (648)
Q Consensus 292 l~v~~~~~ 299 (648)
+.+|++..
T Consensus 358 v~iw~~~~ 365 (420)
T 3vl1_A 358 IKLDIISD 365 (420)
T ss_dssp EEEEEECC
T ss_pred EEEEeccC
Confidence 77777764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-05 Score=78.82 Aligned_cols=239 Identities=9% Similarity=0.056 Sum_probs=133.1
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-c-ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..+.|||||++||-... +| +|.+||+++++.... . -......+.|+||+.++++... ...|..+++.
T Consensus 15 ~V~~~~fsp~~~~l~s~~~-dg----~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~----d~~i~vwd~~ 85 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLY-SG----RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD----DFRIRVFNYN 85 (304)
T ss_dssp CEEEEEECSSSSEEEEEET-TS----EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET----TSEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEcC-CC----cEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC----CCEEEEEECC
Confidence 3678899999999886653 34 799999999876532 1 1223456899999944444442 2458888988
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCce-eEeeecccce-eeeEeec-CCEEEEE
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL-RVLTPRVVGV-DTAASHR-GNHFFIT 236 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~-~~l~~~~~~~-~~~~s~d-g~~l~~~ 236 (648)
++ +....+..+ ......+.++|++++|+..+. +..|.++|+.++... +.+......+ ...|+|+ +..|+ +
T Consensus 86 ~~--~~~~~~~~h-~~~v~~~~~~~~~~~l~sgs~---D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~-s 158 (304)
T 2ynn_A 86 TG--EKVVDFEAH-PDYIRSIAVHPTKPYVLSGSD---DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-S 158 (304)
T ss_dssp TC--CEEEEEECC-SSCEEEEEECSSSSEEEEEET---TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE-E
T ss_pred CC--cEEEEEeCC-CCcEEEEEEcCCCCEEEEECC---CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE-E
Confidence 77 333444433 344557889999998874433 345788888776412 2222222222 2458885 45444 3
Q ss_pred eccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEE--eCC-EEEEEEecCCeeEEEEEEcCCCCCcccccCCCcee
Q 006375 237 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL--FID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 313 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i 313 (648)
...+ ..|...|+........+.... ...+..+.+ .++ .+++....++ .+.+|++.. +..+ .
T Consensus 159 gs~D----~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~--~i~iWd~~~-~~~~--------~ 222 (304)
T 2ynn_A 159 GCLD----RTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDL--TIKIWDYQT-KSCV--------A 222 (304)
T ss_dssp EETT----SEEEEEETTCSSCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTS--EEEEEETTT-TEEE--------E
T ss_pred EeCC----CeEEEEECCCCCccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCC--eEEEEeCCC-Cccc--------e
Confidence 3332 367777876533222232222 112333333 233 3445555554 577888873 2211 1
Q ss_pred ecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 314 EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 314 ~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
.+......+..+.+++++. ++++.+. -..+..+|+.+++
T Consensus 223 ~~~~h~~~v~~~~~~p~~~-~l~s~s~---Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 223 TLEGHMSNVSFAVFHPTLP-IIISGSE---DGTLKIWNSSTYK 261 (304)
T ss_dssp EEECCSSCEEEEEECSSSS-EEEEEET---TSCEEEEETTTCC
T ss_pred eeCCCCCCEEEEEECCCCC-EEEEEcC---CCeEEEEECCCCc
Confidence 1112111233344556666 3333332 3568888998887
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-05 Score=79.81 Aligned_cols=194 Identities=10% Similarity=0.082 Sum_probs=116.3
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..+.|||||++||.... +| .|.+|++.+++..... -......++|+||+.++++... ...|..+++.
T Consensus 25 ~v~~~~~s~~~~~l~s~~~-dg----~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~i~vwd~~ 95 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSA-DK----LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD----DKTLKIWDVS 95 (312)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETT
T ss_pred cEEEEEECCCCCEEEEeeC-CC----eEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC----CCEEEEEECC
Confidence 4678899999999887653 34 6899999888765321 1222456999999944344432 2358888888
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEEec
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRR 238 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~~ 238 (648)
++ +....+... ......+.|+|++++|+..+. ...|.++|+.+++....+......+ ...|+|+|+.|+..+.
T Consensus 96 ~~--~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 96 SG--KCLKTLKGH-SNYVFCCNFNPQSNLIVSGSF---DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp TC--CEEEEEECC-SSCEEEEEECSSSSEEEEEET---TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CC--cEEEEEcCC-CCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 76 233333333 234456789999998875443 3458899998876223333222222 3458999987665544
Q ss_pred cCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcCC
Q 006375 239 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
. ..|...|+........+... ....+..+.+.+ +.++ ....++ .+.+|++..
T Consensus 170 d-----~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~~d~--~i~iwd~~~ 223 (312)
T 4ery_A 170 D-----GLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYIL-AATLDN--TLKLWDYSK 223 (312)
T ss_dssp T-----SCEEEEETTTCCEEEEECCS-SCCCEEEEEECTTSSEEE-EEETTT--EEEEEETTT
T ss_pred C-----CcEEEEECCCCceeeEEecc-CCCceEEEEECCCCCEEE-EEcCCC--eEEEEECCC
Confidence 3 35777888653322222222 222344455544 3444 334444 677888863
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.66 E-value=8.9e-06 Score=80.69 Aligned_cols=234 Identities=11% Similarity=0.018 Sum_probs=132.7
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc-cCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
.++.|+|||+.|.++....+ .|+++|++++ ...... ......++++|||.+++... ....|++++..++.
T Consensus 31 eg~~~d~~g~~l~~~~~~~~----~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~----~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVRQN----RTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSH----GLRRLERQREPGGE 101 (296)
T ss_dssp EEEEEEGGGTEEEEEEGGGT----EEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEET----TTTEEEEECSTTCC
T ss_pred cCCeEeCCCCEEEEEeCCCC----EEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEec----CCCeEEEEcCCCCc
Confidence 48999999998777765444 7999999988 433222 22344689999997655442 22458888886662
Q ss_pred CCcEEEEeecCC---CeEEEEEeCCCCcEEEEEEc--c------------ccccEEEEEECCCCCceeEeeecccc-eee
Q 006375 163 SNDICLYHEKDD---IYSLGLQASESKKFLFIASE--S------------KITRFVFYLDVSKPEELRVLTPRVVG-VDT 224 (648)
Q Consensus 163 ~~~~~~~~~~~~---~~~~~~~~s~Dg~~l~~~~~--~------------~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~ 224 (648)
...+...... ....++.++|||+.++..+. . .....||.++.+ ++ .+.+...... ...
T Consensus 102 --~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi 177 (296)
T 3e5z_A 102 --WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGL 177 (296)
T ss_dssp --EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEE
T ss_pred --EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccE
Confidence 2223222111 11235778999985442211 0 123589999987 54 5544433222 234
Q ss_pred eEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcc---eeEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcCCC
Q 006375 225 AASHRGNHFFITRRSDELFNSELLACPVDNTSET---TVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPAV 300 (648)
Q Consensus 225 ~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~~ 300 (648)
.|+|||+.+ +.... +.+|++++++..+.. ..++ ......+.++.++.++ +++.. + ..|.+++.+
T Consensus 178 ~~s~dg~~l-v~~~~----~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~--~~v~~~~~~-- 245 (296)
T 3e5z_A 178 AFLPSGNLL-VSDTG----DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--G--DGVHVLTPD-- 245 (296)
T ss_dssp EECTTSCEE-EEETT----TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--T--TEEEEECTT--
T ss_pred EECCCCCEE-EEeCC----CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--C--CeEEEECCC--
Confidence 589999977 44332 247888887522222 1233 2223335567777654 44444 2 357777765
Q ss_pred CCcccccCCCceeecCCCeeeeeCCCC-cccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 301 GEPLKSLQGGKSVEFIDPVYSIDPSES-VFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 301 g~~~~~l~~~~~i~~~~~~~~v~~~~~-~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+..+. .+..+.. +..+.+ .++++.|+++.. ..++++++++++
T Consensus 246 g~~~~------~~~~~~~---~~~~~f~~~d~~~L~v~t~-----~~l~~~~~~~~~ 288 (296)
T 3e5z_A 246 GDELG------RVLTPQT---TSNLCFGGPEGRTLYMTVS-----TEFWSIETNVRG 288 (296)
T ss_dssp SCEEE------EEECSSC---CCEEEEESTTSCEEEEEET-----TEEEEEECSCCB
T ss_pred CCEEE------EEECCCC---ceeEEEECCCCCEEEEEcC-----CeEEEEEccccc
Confidence 44322 2333321 111122 356666666543 379999998876
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.65 E-value=2e-05 Score=81.12 Aligned_cols=121 Identities=12% Similarity=-0.010 Sum_probs=71.9
Q ss_pred EeCCCCCEEEEEEeCCCCeEE-EEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeC-----CCCCCceEEEEECC
Q 006375 87 QVSPDNKLVAYAEDTKGDEIY-TVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMD-----EILRPDKAWLHKLE 159 (648)
Q Consensus 87 ~~SPDG~~la~~~~~~G~e~~-~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~-----~~~~~~~l~~~~l~ 159 (648)
..+||+++ +|..+..+.... +|.++|+++++.+.....+....+++|||| .+|++... +......|..+++.
T Consensus 27 ~~~~~~~~-~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 27 APGADGRR-SYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred cCCCCCCE-EEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 44689965 777765222112 899999999987643222222379999999 66554321 11123457788887
Q ss_pred CCCCCcEEEEe-ecC---CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 160 ADQSNDICLYH-EKD---DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 160 ~~~~~~~~~~~-~~~---~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
+.......... ... ...-..+.+||||++|++... ...+.|.++| ++++
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~-~~~~~v~viD-~t~~ 158 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF-AAGPAVGLVV-QGGS 158 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEec-CCCCeEEEEE-CCCC
Confidence 65321111111 000 011225689999999988643 2356799999 8877
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-05 Score=86.07 Aligned_cols=253 Identities=10% Similarity=0.014 Sum_probs=144.4
Q ss_pred eeEEeC----CCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccC------------ccceeEEecCC-eEEEEEeC
Q 006375 84 GCFQVS----PDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG------------VTASVEWAGNE-ALVYITMD 145 (648)
Q Consensus 84 ~~~~~S----PDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~------------~~~~~~WspDg-~l~y~~~~ 145 (648)
.++.+| |||++++.+....+ +|.|+|.++.+.+.. ...+ ....+..|+++ .+++..
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~----~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-- 316 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPP----QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-- 316 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETT----EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE--
T ss_pred ceeEEccccCCCCCEEEEEEccCC----eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe--
Confidence 477899 79999877765544 688999999887632 1111 12346678888 555443
Q ss_pred CCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec---cc--
Q 006375 146 EILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR---VV-- 220 (648)
Q Consensus 146 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~---~~-- 220 (648)
....+|+.++..+.. ...+..-....+..+..|+|||+++++..+ ..+.|.++|+++++ .....+- ..
T Consensus 317 --~~~g~v~~vd~~~~~--~~~v~~i~~~~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~k-l~~~i~vgg~~Php 389 (567)
T 1qks_A 317 --KETGKILLVDYTDLN--NLKTTEISAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGK-LVAIEDTGGQTPHP 389 (567)
T ss_dssp --TTTTEEEEEETTCSS--EEEEEEEECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTE-EEEEEECSSSSBCC
T ss_pred --cCCCeEEEEecCCCc--cceeeeeeccccccCceECCCCCEEEEEeC--CCCeEEEEECCCCc-EEEEEeccCcCCCC
Confidence 234568888876642 222222223445557789999999987654 35779999999886 3322211 11
Q ss_pred --ceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCC--ccee----EecCCCCc-ccceEEEeCCEEEEEEecCC---
Q 006375 221 --GVDTAASHRGNHFFITRRSDELFNSELLACPVDNTS--ETTV----LIPHRESV-KLQDIQLFIDHLAVYEREGG--- 288 (648)
Q Consensus 221 --~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~--~~~~----~~~~~~~~-~~~~~~~~~~~l~~~~~~~~--- 288 (648)
+.. .+.|+++.+|++++. + ...|.+++.+..+ ...| .++..... .-...++++.++++...-+.
T Consensus 390 g~g~~-~~~p~~g~v~~t~~~-g--~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~ 465 (567)
T 1qks_A 390 GRGAN-FVHPTFGPVWATSHM-G--DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE 465 (567)
T ss_dssp TTCEE-EEETTTEEEEEEEBS-S--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred cccee-eECCCCCcEEEeCCC-C--CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcc
Confidence 112 357778888777664 2 2357777775411 1112 22222111 11123445556665543221
Q ss_pred -eeEEEEEEcCCC--CCcccccCCCceee------cCCCeeeeeCCCCcccccEEEEEEee-CCCCCEEEEEECCCCc
Q 006375 289 -LQKITTYRLPAV--GEPLKSLQGGKSVE------FIDPVYSIDPSESVFSSRILRFHYSS-LRTPPSVYDYDMDMGI 356 (648)
Q Consensus 289 -~~~l~v~~~~~~--g~~~~~l~~~~~i~------~~~~~~~v~~~~~~~~~~~l~~~~ss-~~~P~~~~~~d~~~~~ 356 (648)
...+.+++++.. .+.... -+.+. +++..-.+..+..++++++++|+.-+ -...+.|..+|.++++
T Consensus 466 ~~~~v~v~d~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 466 ISGSVAVFDIKAMTGDGSDPE---FKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp HHTCEEEEEGGGCCCSSSCCC---EEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred cCceEEEEECCcccccccCCC---cEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 347899998743 010000 01111 22221123335667889998887533 2466889999999988
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-07 Score=93.18 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=68.4
Q ss_pred EEEEecCCCCCCCC-CCCchhHHHHHHC--CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 408 LLLYGYGSYEICND-PAFNSSRLSLLDR--GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 408 ~vl~~hGg~~~~~~-~~~~~~~~~l~~~--G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
.||++||..+.... ..|......|.+. |+.|+++|+ |+|....... +. . ....+++.+.++++...... .
T Consensus 7 pvVllHG~~~~~~~~~~~~~~~~~L~~~~~g~~v~~~d~-G~g~s~~~~~--~~-~--~~~~~~~~~~~~~l~~~~~l-~ 79 (279)
T 1ei9_A 7 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEI-GKTLREDVEN--SF-F--LNVNSQVTTVCQILAKDPKL-Q 79 (279)
T ss_dssp CEEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCC-SSSHHHHHHH--HH-H--SCHHHHHHHHHHHHHSCGGG-T
T ss_pred cEEEECCCCCCCCCcccHHHHHHHHHHHCCCcEEEEEEe-CCCCcccccc--cc-c--cCHHHHHHHHHHHHHhhhhc-c
Confidence 48999996655422 3567767777765 889999997 7764321111 00 0 12224444555555432211 2
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCc-eeEEEecCC
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDL-FKAAVAAVP 518 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~-~~a~v~~~~ 518 (648)
+++.++|+||||.++..++.++|+. ++.+|+..+
T Consensus 80 ~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~ 114 (279)
T 1ei9_A 80 QGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp TCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred CCEEEEEECHHHHHHHHHHHHcCCcccceEEEecC
Confidence 6899999999999999999999984 898886654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=5.7e-06 Score=84.99 Aligned_cols=203 Identities=12% Similarity=0.129 Sum_probs=104.4
Q ss_pred eEEeCCCCCE-EEEEEe-------------CCCCeEEEEEEEECC-CCCeee-cc-----ccCccceeEEecCCeEEEEE
Q 006375 85 CFQVSPDNKL-VAYAED-------------TKGDEIYTVYVIDIE-TGTPVG-KP-----LVGVTASVEWAGNEALVYIT 143 (648)
Q Consensus 85 ~~~~SPDG~~-la~~~~-------------~~G~e~~~l~v~dl~-~g~~~~-~~-----~~~~~~~~~WspDg~l~y~~ 143 (648)
.+.|||||++ ++|+.+ ..| ++.+++++ .|+... .. .......++|+|||+.+|+.
T Consensus 87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g----~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG----YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC----EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred cEEECCCCCEEEEEEecCCcceeccceeecCCc----eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 4789999997 455543 223 56777776 355432 11 11224569999999433544
Q ss_pred eCCCCCCceEEEEECC-CCCCCcEEEEeec--C-CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCcee----Ee
Q 006375 144 MDEILRPDKAWLHKLE-ADQSNDICLYHEK--D-DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR----VL 215 (648)
Q Consensus 144 ~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~--~-~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~----~l 215 (648)
.. ....|+.+++. ++. ...+.... . ......+.+||||++|++.......-.+|.+|.++++ .. .+
T Consensus 163 ~~---~~~~v~~~~~~~~g~--~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~-~~~~~~~~ 236 (365)
T 1jof_A 163 DL---TANKLWTHRKLASGE--VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM-PVYTHHSF 236 (365)
T ss_dssp ET---TTTEEEEEEECTTSC--EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC-EEEEEEEE
T ss_pred cC---CCCEEEEEEECCCCC--EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCc-EEEccceE
Confidence 32 13468888887 542 22222111 1 2233467899999999876443333345555555555 32 12
Q ss_pred e--ecc------------cceeee-EeecCCEEEEEeccCC-CCCcEEEEEeCCCCCccee---Eec-CCCCcccceEEE
Q 006375 216 T--PRV------------VGVDTA-ASHRGNHFFITRRSDE-LFNSELLACPVDNTSETTV---LIP-HRESVKLQDIQL 275 (648)
Q Consensus 216 ~--~~~------------~~~~~~-~s~dg~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~ 275 (648)
. +.. ...... |+|||++||......+ .....|.+++++..+.... .++ ......-..+++
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp 316 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP 316 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence 1 110 112356 8999998865433211 0112555555542133222 122 111122234556
Q ss_pred ---eCCEEEEEEecCCeeEEEEEEcCC
Q 006375 276 ---FIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 276 ---~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
+++++++....+ ..+.+++++.
T Consensus 317 ~~~dg~~l~v~~~~~--~~v~v~~~~~ 341 (365)
T 1jof_A 317 CPWSDEWMAITDDQE--GWLEIYRWKD 341 (365)
T ss_dssp CTTCTTEEEEECSSS--CEEEEEEEET
T ss_pred CCcCCCEEEEEEcCC--CeEEEEEEch
Confidence 566766554332 4677787773
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-05 Score=78.17 Aligned_cols=196 Identities=11% Similarity=0.072 Sum_probs=115.9
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..+.|||||++|+.... +| .|.++|+.+++..... -......+.|+|++.++++...+ ..|..+++.
T Consensus 67 ~v~~~~~~~~~~~l~s~~~-d~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~i~iwd~~ 137 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASD-DK----TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVK 137 (312)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT----SCEEEEETT
T ss_pred ceEEEEEcCCCCEEEEECC-CC----EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECC
Confidence 4678899999999987654 33 7999999998865421 12234458999999444444322 348888988
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-ccce-eeeEeecCCEEEEEe
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVGV-DTAASHRGNHFFITR 237 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-~~~~-~~~~s~dg~~l~~~~ 237 (648)
++ +....+.... .....+.|+|||++|+..+. ...|.++|+.+++....+... .... ...|+|+|+.|+..+
T Consensus 138 ~~--~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 138 TG--KCLKTLPAHS-DPVSAVHFNRDGSLIVSSSY---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp TC--CEEEEECCCS-SCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred CC--EEEEEecCCC-CcEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence 76 2233333322 23446789999998876543 346889999887622222221 1222 245899999876655
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccc--eEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQ--DIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
.. ..|...|+........+..+....... .+...++..++....++ .+.+|++..
T Consensus 212 ~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~i~vwd~~~ 268 (312)
T 4ery_A 212 LD-----NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN--LVYIWNLQT 268 (312)
T ss_dssp TT-----TEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTS--CEEEEETTT
T ss_pred CC-----CeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCC--EEEEEECCC
Confidence 43 367788887633222122222221111 22223344444544444 577888873
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.61 E-value=9.8e-07 Score=91.96 Aligned_cols=199 Identities=14% Similarity=0.117 Sum_probs=118.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc----ccCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP----LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~----~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
.+..+.|+|+|+.+.++...+| .|++||+.+++..... ..+....++|+||| .|+.... ...|+.+
T Consensus 133 ~v~~~~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iw 203 (402)
T 2aq5_A 133 RVGIVAWHPTAQNVLLSAGCDN----VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR-----DKRVRVI 203 (402)
T ss_dssp CEEEEEECSSBTTEEEEEETTS----CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET-----TSEEEEE
T ss_pred eEEEEEECcCCCCEEEEEcCCC----EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec-----CCcEEEE
Confidence 4678999999954444544445 6999999998765422 22334569999999 6654432 2458899
Q ss_pred ECCCCCCCcEEEE-eecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCc-eeEee-ecccc-eeeeEeecCCE
Q 006375 157 KLEADQSNDICLY-HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE-LRVLT-PRVVG-VDTAASHRGNH 232 (648)
Q Consensus 157 ~l~~~~~~~~~~~-~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~-~~~l~-~~~~~-~~~~~s~dg~~ 232 (648)
++.++ +....+ ..........+.|+|||++|+..........|.++|+.+.+. ..... ..... ....|+|+|+.
T Consensus 204 d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 281 (402)
T 2aq5_A 204 EPRKG--TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNI 281 (402)
T ss_dssp ETTTT--EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTE
T ss_pred eCCCC--ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCE
Confidence 98876 223333 222222234678999999887654434567899999988651 22221 12222 33569999998
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCc-ceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 233 FFITRRSDELFNSELLACPVDNTSE-TTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
|++....+ ..|...++..... ...+........+..+.+.++..++.. . ...+.+|++.
T Consensus 282 l~~~g~~d----g~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-~--~~~~~~~~l~ 341 (402)
T 2aq5_A 282 VYLCGKGD----SSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-K--CEIARFYKLH 341 (402)
T ss_dssp EEEEETTC----SCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-G--TEEEEEEEEE
T ss_pred EEEEEcCC----CeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-c--ceeEEEEEcC
Confidence 87776542 3566666665332 222322222334667777766443322 2 2356677766
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.60 E-value=6e-06 Score=82.50 Aligned_cols=235 Identities=8% Similarity=-0.031 Sum_probs=127.7
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
.++.|+|||+.|.|+-..++ .|+.++.. |+..... ..+....++|++||.++.... ....|++++.. +
T Consensus 48 egp~~~~~g~~l~~~d~~~~----~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~v~~~----~~~~v~~~~~~-g- 116 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGR----RVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLVHCEH----GRRAITRSDAD-G- 116 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTT----EEEEEETT-SCEEEEEESCSCEEEEEECTTSCEEEEET----TTTEEEEECTT-S-
T ss_pred cCCeEeCCCCEEEEEECCCC----EEEEEeCC-CCEEEEeCCCCccceeeECCCCCEEEEEC----CCCEEEEECCC-C-
Confidence 47999999999888765444 68888884 5433222 223345689999997655432 22458888775 3
Q ss_pred CCcEEEEeecCC---CeEEEEEeCCCCcEEEEEEc---c------------ccccEEEEEECCCCCceeEeeecccc-ee
Q 006375 163 SNDICLYHEKDD---IYSLGLQASESKKFLFIASE---S------------KITRFVFYLDVSKPEELRVLTPRVVG-VD 223 (648)
Q Consensus 163 ~~~~~~~~~~~~---~~~~~~~~s~Dg~~l~~~~~---~------------~~~~~l~~~dl~~~~~~~~l~~~~~~-~~ 223 (648)
+...+...... ....++.+++||+. +++.. . .....||++|.++++ ++.+. .... ..
T Consensus 117 -~~~~~~~~~~~~~~~~~~~i~~d~dG~l-~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-~~~~~-~~~~p~g 192 (305)
T 3dr2_A 117 -QAHLLVGRYAGKRLNSPNDLIVARDGAI-WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-LQRMA-DLDHPNG 192 (305)
T ss_dssp -CEEEEECEETTEECSCCCCEEECTTSCE-EEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-CEEEE-EESSEEE
T ss_pred -CEEEEEeccCCCccCCCCCEEECCCCCE-EEeCcCCCccccccccccccccCCCeEEEEcCCCCc-EEEEe-cCCCCcc
Confidence 22222222111 11224678999974 44311 0 123689999998776 55554 2222 22
Q ss_pred eeEeecCCEEEEEeccC-CCCCcEEEEEeCCCCCcce-eEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCC
Q 006375 224 TAASHRGNHFFITRRSD-ELFNSELLACPVDNTSETT-VLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVG 301 (648)
Q Consensus 224 ~~~s~dg~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g 301 (648)
..|+|||+.||+..... ...+.+|++++++..+... .++.........++..+.++-++....+ .|.+++.+ +
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~---gv~~~~~~--g 267 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT---GVCVFDSD--G 267 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS---EEEEECTT--S
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC---cEEEECCC--C
Confidence 45899999988875531 0113578888876422111 1222222223556777765443333322 47777664 5
Q ss_pred CcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEEC
Q 006375 302 EPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDM 352 (648)
Q Consensus 302 ~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~ 352 (648)
..+ ..+..|.. +....+.++++.|+++.+ ..+|++++
T Consensus 268 ~~~------~~~~~~~~---~~~~~f~~d~~~L~it~~-----~~l~~~~~ 304 (305)
T 3dr2_A 268 QLL------GHIPTPGT---ASNCTFDQAQQRLFITGG-----PCLWMLPL 304 (305)
T ss_dssp CEE------EEEECSSC---CCEEEECTTSCEEEEEET-----TEEEEEEC
T ss_pred CEE------EEEECCCc---eeEEEEeCCCCEEEEEcC-----CeEEEEEC
Confidence 432 23333331 111222356666766544 26777764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-05 Score=81.79 Aligned_cols=242 Identities=12% Similarity=0.077 Sum_probs=139.2
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
..+..+.|||||++||.... +| .|.++|+.+++..... -......++| ++.++++... ...|+.+++
T Consensus 135 ~~v~~v~~s~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----dg~i~i~d~ 203 (401)
T 4aez_A 135 TYVASVKWSHDGSFLSVGLG-NG----LVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR----SGAIHHHDV 203 (401)
T ss_dssp CCEEEEEECTTSSEEEEEET-TS----CEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEET----TSEEEEEET
T ss_pred CCEEEEEECCCCCEEEEECC-CC----eEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcC----CCCEEEEec
Confidence 35778999999999988764 34 6899999998865432 1223445888 4534444432 245888998
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEe
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITR 237 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~ 237 (648)
.... .....+... ......+.|+||+++|+..+. +..|+++|+.+++....+...... ....|+|++..+++..
T Consensus 204 ~~~~-~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~ 278 (401)
T 4aez_A 204 RIAN-HQIGTLQGH-SSEVCGLAWRSDGLQLASGGN---DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG 278 (401)
T ss_dssp TSSS-CEEEEEECC-SSCEEEEEECTTSSEEEEEET---TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred ccCc-ceeeEEcCC-CCCeeEEEEcCCCCEEEEEeC---CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEe
Confidence 7542 223333333 334557889999999886544 346899999887622233333222 2356999988877765
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC--EEEEEEe-cCCeeEEEEEEcCCCCCcccccCCCceee
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID--HLAVYER-EGGLQKITTYRLPAVGEPLKSLQGGKSVE 314 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~-~~~~~~l~v~~~~~~g~~~~~l~~~~~i~ 314 (648)
.. ..+..|...|+.+.... ..+.... .+..+.+..+ .++.... .+ ..+.++++.. .... ....
T Consensus 279 ~g--s~d~~i~i~d~~~~~~~-~~~~~~~--~v~~~~~s~~~~~l~~~~g~~d--g~i~v~~~~~--~~~~-----~~~~ 344 (401)
T 4aez_A 279 GG--TMDKQIHFWNAATGARV-NTVDAGS--QVTSLIWSPHSKEIMSTHGFPD--NNLSIWSYSS--SGLT-----KQVD 344 (401)
T ss_dssp CC--TTTCEEEEEETTTCCEE-EEEECSS--CEEEEEECSSSSEEEEEECTTT--CEEEEEEEET--TEEE-----EEEE
T ss_pred cC--CCCCEEEEEECCCCCEE-EEEeCCC--cEEEEEECCCCCeEEEEeecCC--CcEEEEecCC--ccce-----eEEE
Confidence 41 23457888898763322 2343332 3566666554 4443322 33 4677788763 2111 1111
Q ss_pred cCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 315 FIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 315 ~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
++.....+..+.+++++..++ +.+ .-..+..+++.+++
T Consensus 345 ~~~h~~~v~~~~~s~dg~~l~-s~~---~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 345 IPAHDTRVLYSALSPDGRILS-TAA---SDENLKFWRVYDGD 382 (401)
T ss_dssp EECCSSCCCEEEECTTSSEEE-EEC---TTSEEEEEECCC--
T ss_pred ecCCCCCEEEEEECCCCCEEE-EEe---CCCcEEEEECCCCc
Confidence 222222233345566666443 332 33678889988876
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-05 Score=78.02 Aligned_cols=228 Identities=10% Similarity=-0.017 Sum_probs=129.0
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQS 163 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~ 163 (648)
.++.|+|+++.|.|+-...+ .|+.+|+++++......+.....++|+|||.++... ...|++++..++
T Consensus 16 Egp~w~~~~~~l~~~d~~~~----~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~------~~~l~~~d~~~g-- 83 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAK----KVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI------GTKFCALNWKEQ-- 83 (297)
T ss_dssp EEEEEETTTTEEEEEETTTT----EEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE------TTEEEEEETTTT--
T ss_pred cCCeEECCCCEEEEEECCCC----EEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE------CCeEEEEECCCC--
Confidence 37999999888877654433 799999999876543344445569999999755443 135899998776
Q ss_pred CcEEEEeec-C-C-CeEEEEEeCCCCcEEEEEEcc---------ccccEEEEEECCCCCceeEeeecccc-eeeeEeecC
Q 006375 164 NDICLYHEK-D-D-IYSLGLQASESKKFLFIASES---------KITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRG 230 (648)
Q Consensus 164 ~~~~~~~~~-~-~-~~~~~~~~s~Dg~~l~~~~~~---------~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg 230 (648)
+-+.+.... + + ....++.++|||+ +++.... .....||.++.++ + ...+...... ....|+|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~-~~~~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH-H-VKKYFDQVDISNGLDWSLDH 160 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS-C-EEEEEEEESBEEEEEECTTS
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC-C-EEEEeeccccccceEEcCCC
Confidence 222333221 1 1 2234678899998 4444322 1335899998764 3 4444332221 234589999
Q ss_pred CEEEEEeccCCCCCcEEEEEeCC--CCCc--ceeEecC-CCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCCCCCcc
Q 006375 231 NHFFITRRSDELFNSELLACPVD--NTSE--TTVLIPH-RESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPL 304 (648)
Q Consensus 231 ~~l~~~~~~~~~~~~~l~~~~~~--~~~~--~~~~~~~-~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~~g~~~ 304 (648)
+.||+.... ..+|++++++ +... .+.+..- .....+.++.++.+ .+++....+ .+|.+++.++ |..+
T Consensus 161 ~~lyv~~~~----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~--~~v~~~d~~t-G~~~ 233 (297)
T 3g4e_A 161 KIFYYIDSL----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG--GRVIRLDPVT-GKRL 233 (297)
T ss_dssp CEEEEEEGG----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT--TEEEEECTTT-CCEE
T ss_pred CEEEEecCC----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC--CEEEEEcCCC-ceEE
Confidence 988877654 2477777753 3211 1112211 11223566777665 455444433 3567666652 3322
Q ss_pred cccCCCceeecCCCeeeeeCCCCc-ccccEEEEEEeeC
Q 006375 305 KSLQGGKSVEFIDPVYSIDPSESV-FSSRILRFHYSSL 341 (648)
Q Consensus 305 ~~l~~~~~i~~~~~~~~v~~~~~~-~~~~~l~~~~ss~ 341 (648)
..+.+|.. .+....+. ++.+.|+++.++.
T Consensus 234 ------~~i~~p~~--~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 234 ------QTVKLPVD--KTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp ------EEEECSSS--BEEEEEEESGGGCEEEEEEBCT
T ss_pred ------EEEECCCC--CceEEEEeCCCCCEEEEEcCCc
Confidence 23444422 12222333 5667777776654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.9e-06 Score=87.45 Aligned_cols=251 Identities=11% Similarity=0.081 Sum_probs=135.3
Q ss_pred EEeeEEeCCCCCEEEEEEeCCC------CeEEEEEEEECCCCCee---e-ccccCccceeEEecCC-eEEEEEeCCCCCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKG------DEIYTVYVIDIETGTPV---G-KPLVGVTASVEWAGNE-ALVYITMDEILRP 150 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G------~e~~~l~v~dl~~g~~~---~-~~~~~~~~~~~WspDg-~l~y~~~~~~~~~ 150 (648)
.+..+.|||||+.++++.+..| +....|++||+.+++.. . .........++|+||+ .|+....+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----- 88 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN----- 88 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESS-----
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccC-----
Confidence 4457899999985555543334 44558999999987532 1 1122334569999999 66554332
Q ss_pred ceEEEEECCCCCC--CcEEEEeecCCCeEEEEEeCCC-CcEEEEEEccccccEEEEEECCCCC------ceeEe---eec
Q 006375 151 DKAWLHKLEADQS--NDICLYHEKDDIYSLGLQASES-KKFLFIASESKITRFVFYLDVSKPE------ELRVL---TPR 218 (648)
Q Consensus 151 ~~l~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~s~D-g~~l~~~~~~~~~~~l~~~dl~~~~------~~~~l---~~~ 218 (648)
..|..+++.+... +....+... ......+.|+|| +++|+..+. ...|+++|+.+++ ....+ ...
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNH-SSSVKTVKFNAKQDNVLASGGN---NGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCS-SSCCCEEEECSSSTTBEEEECS---SSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred CeEEEeecccccccccchhhccCC-ccceEEEEEcCCCCCEEEEEcC---CCeEEEEECCCCccccccccccccccccCC
Confidence 3477888876211 122222222 223346789998 666654332 3458888988764 11111 111
Q ss_pred ccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCC-----CcccceEEEeCC--EEEEEEecCC-e
Q 006375 219 VVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE-----SVKLQDIQLFID--HLAVYEREGG-L 289 (648)
Q Consensus 219 ~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~l~~~~~~~~-~ 289 (648)
... ....|+|++..++++...+ ..|.+.|+....... .+.... ...+..+.+.++ .+++....++ .
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~ 239 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSS----NFASIWDLKAKKEVI-HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDND 239 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSS----SCEEEEETTTTEEEE-EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS
T ss_pred CCCeeEEEeCCCCCcEEEEEcCC----CCEEEEECCCCCcce-EEeccccccccCCceEEEEECCCCCCEEEEEECCCCC
Confidence 112 2346899955555554432 468888887632222 332221 234666777664 3555555443 3
Q ss_pred eEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcc-cccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 290 QKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVF-SSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 290 ~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~-~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
..+.++++.........+. . .....+..+.+++ ++. ++++.+. -..+..+|+.+++.
T Consensus 240 ~~i~~~d~~~~~~~~~~~~------~-~~~~~v~~~~~s~~~~~-~l~s~~~---dg~v~~wd~~~~~~ 297 (416)
T 2pm9_A 240 PSILIWDLRNANTPLQTLN------Q-GHQKGILSLDWCHQDEH-LLLSSGR---DNTVLLWNPESAEQ 297 (416)
T ss_dssp CCCCEEETTSTTSCSBCCC------S-CCSSCEEEEEECSSCSS-CEEEEES---SSEEEEECSSSCCE
T ss_pred ceEEEEeCCCCCCCcEEee------c-CccCceeEEEeCCCCCC-eEEEEeC---CCCEEEeeCCCCcc
Confidence 3688888874322211111 0 1111233344555 444 4444433 36789999988873
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.59 E-value=5.7e-08 Score=101.80 Aligned_cols=112 Identities=9% Similarity=0.008 Sum_probs=76.8
Q ss_pred CCCcEEEEecCCCCCCCCCCCch-hHHHHH-HCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNS-SRLSLL-DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 481 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~-~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 481 (648)
...|+||++||..+.. ...|.. .+..|+ ..+|.|+++|+||+|..... .+.. .-....+++.+.+++|.++..
T Consensus 67 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~y~--~~~~--~~~~v~~~la~ll~~L~~~~g 141 (449)
T 1hpl_A 67 TGRKTRFIIHGFIDKG-EESWLSTMCQNMFKVESVNCICVDWKSGSRTAYS--QASQ--NVRIVGAEVAYLVGVLQSSFD 141 (449)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHHHHCCEEEEEEECHHHHSSCHH--HHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEecCCCCC-CccHHHHHHHHHHhcCCeEEEEEeCCcccCCccH--HHHH--HHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999954432 233544 334554 46899999999988754321 1100 000122466777777764433
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
++.+++.++|+||||.+|+.++.++|++++.+++..|..
T Consensus 142 ~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa~ 180 (449)
T 1hpl_A 142 YSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPAE 180 (449)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCccc
Confidence 567899999999999999999999999999999777643
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.3e-06 Score=91.13 Aligned_cols=246 Identities=10% Similarity=-0.006 Sum_probs=132.4
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-c-ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
.+.+||||++||+..+ + .|+++++++++.... . -.+....++|||||.++.+... ...|.++++.++.
T Consensus 23 ~~~~spdg~~l~~~~~--~----~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~----d~~v~lWd~~~~~ 92 (611)
T 1nr0_A 23 VLGNTPAGDKIQYCNG--T----SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV----HGNVRIWDTTQTT 92 (611)
T ss_dssp CCEECTTSSEEEEEET--T----EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEESSSTT
T ss_pred EEeeCCCCCEEEeCCC--C----EEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeC----CCCEEEeECCCCc
Confidence 5678999999999762 2 789999987765432 1 1222455999999944444432 2347788886542
Q ss_pred CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcccc-ccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEEeccC
Q 006375 163 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKI-TRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSD 240 (648)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~-~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~~~~ 240 (648)
......+... ......++|+|||+.|+..+.... ...++++|.... ...+......+ ...|+|++...++....+
T Consensus 93 ~~~~~~~~~~-~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~--~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D 169 (611)
T 1nr0_A 93 HILKTTIPVF-SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS--NGNLTGQARAMNSVDFKPSRPFRIISGSDD 169 (611)
T ss_dssp CCEEEEEECS-SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB--CBCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred ceeeEeeccc-CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC--cceecCCCCCceEEEECCCCCeEEEEEeCC
Confidence 2222223322 234457899999999886654332 257888774322 23333333333 345899987544444432
Q ss_pred CCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCe
Q 006375 241 ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPV 319 (648)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~ 319 (648)
..+...+... ......+.... ..+..+.+.++. +++....++ .+.+|++.. +.....+... .+......
T Consensus 170 ----~~v~lwd~~~-~~~~~~l~~H~-~~V~~v~fspdg~~las~s~D~--~i~lwd~~~-g~~~~~~~~~-~~~~~~h~ 239 (611)
T 1nr0_A 170 ----NTVAIFEGPP-FKFKSTFGEHT-KFVHSVRYNPDGSLFASTGGDG--TIVLYNGVD-GTKTGVFEDD-SLKNVAHS 239 (611)
T ss_dssp ----SCEEEEETTT-BEEEEEECCCS-SCEEEEEECTTSSEEEEEETTS--CEEEEETTT-CCEEEECBCT-TSSSCSSS
T ss_pred ----CeEEEEECCC-CeEeeeecccc-CceEEEEECCCCCEEEEEECCC--cEEEEECCC-CcEeeeeccc-cccccccC
Confidence 3455566654 22222333222 235566665542 344444444 577778763 2221111000 00000111
Q ss_pred eeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 320 YSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 320 ~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
..|..+.+++++..+ ++.+ .-..+..+|+.+++.
T Consensus 240 ~~V~~v~~spdg~~l-~s~s---~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 240 GSVFGLTWSPDGTKI-ASAS---ADKTIKIWNVATLKV 273 (611)
T ss_dssp SCEEEEEECTTSSEE-EEEE---TTSEEEEEETTTTEE
T ss_pred CCEEEEEECCCCCEE-EEEe---CCCeEEEEeCCCCce
Confidence 134445566777744 3333 236788899988763
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.58 E-value=7.1e-08 Score=97.35 Aligned_cols=109 Identities=13% Similarity=0.058 Sum_probs=78.6
Q ss_pred cEEEEecCCCCCC--------CCCCC----chhHHHHHHCCCE---EEEEccCCCCCCChhhhhcccccCCCCcHhHHHH
Q 006375 407 PLLLYGYGSYEIC--------NDPAF----NSSRLSLLDRGFI---FAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIA 471 (648)
Q Consensus 407 P~vl~~hGg~~~~--------~~~~~----~~~~~~l~~~G~~---v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~ 471 (648)
+.||++||..+.. ....| ...+..|.++||. |+.+|+||.|.....- .........+++.+
T Consensus 41 ~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~l~~~L~~~Gy~~~~V~~~D~~g~G~S~~~~----~~~~~~~~~~~l~~ 116 (342)
T 2x5x_A 41 TPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLSSSEQGSAQ----YNYHSSTKYAIIKT 116 (342)
T ss_dssp CCEEEECCTTCCGGGGGCCCCCCTTTCCCSSCHHHHHHHTTCCTTSEEEECCSCHHHHTCGG----GCCBCHHHHHHHHH
T ss_pred CeEEEECCcCCCcccccccccccccccccHHHHHHHHHhCCCCCCeEEEEeCCCCCccCCcc----ccCCHHHHHHHHHH
Confidence 4588899965532 22345 6667888899998 9999999866321110 00112235678888
Q ss_pred HHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhC--CCceeEEEecCCccc
Q 006375 472 CAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFVD 521 (648)
Q Consensus 472 ~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~~~a~v~~~~~~d 521 (648)
.++.+.+.. ..+++.++||||||.++..++.++ |++++++|+.+|...
T Consensus 117 ~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 117 FIDKVKAYT--GKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp HHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCTT
T ss_pred HHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCcc
Confidence 888887652 237899999999999999999988 889999998887543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=3e-05 Score=78.62 Aligned_cols=240 Identities=13% Similarity=0.083 Sum_probs=132.1
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc-cCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++||-.. .+| .|++||+.+++.... .. ......++|+||| .|+.... ...+..+++
T Consensus 57 ~v~~~~~s~d~~~l~s~s-~Dg----~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----d~~v~iw~~ 126 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSAS-QDG----KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL-----DNICSIYNL 126 (340)
T ss_dssp CEEEEEECTTSSEEEEEE-TTT----EEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEET-----TCEEEEEET
T ss_pred ceEEEEECCCCCEEEEEe-CCC----cEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeC-----CCeEEEEEC
Confidence 467889999999987554 334 799999998876532 11 2234568999999 5544332 234777888
Q ss_pred CCCCCCcEEE--EeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEE
Q 006375 159 EADQSNDICL--YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFI 235 (648)
Q Consensus 159 ~~~~~~~~~~--~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~ 235 (648)
.+........ +..+ ......+.++++++ ++..+ .+..|.++|+.+++....+......+ ...|+|++..|+.
T Consensus 127 ~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-l~s~s---~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 127 KTREGNVRVSRELAGH-TGYLSCCRFLDDNQ-IVTSS---GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp TTCSBSCEEEEEEECC-SSCEEEEEEEETTE-EEEEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ccCCCcceeEEEecCC-CccEEEEEECCCCc-EEEEE---CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 7653222222 2222 23344567888886 33322 23558889998876222333232222 3458999886554
Q ss_pred EeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCCCCCcccccCCCceee
Q 006375 236 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE 314 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~ 314 (648)
.+.. ..|...|+........+..+.. .+..+.+.++ ..++....++ .+.+|++.. +..+. ...
T Consensus 202 g~~d-----~~v~~wd~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~s~d~--~v~iwd~~~-~~~~~------~~~ 265 (340)
T 1got_B 202 GACD-----ASAKLWDVREGMCRQTFTGHES--DINAICFFPNGNAFATGSDDA--TCRLFDLRA-DQELM------TYS 265 (340)
T ss_dssp EETT-----SCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSEEEEEETTS--CEEEEETTT-TEEEE------EEC
T ss_pred EeCC-----CcEEEEECCCCeeEEEEcCCcC--CEEEEEEcCCCCEEEEEcCCC--cEEEEECCC-CcEEE------EEc
Confidence 4432 3577778866332221222322 3556666543 2334444444 577788763 22111 111
Q ss_pred cCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 315 FIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 315 ~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
.+.....+..+.+++++..+. +.+ .-..+..+|..+++
T Consensus 266 ~~~~~~~v~~~~~s~~g~~l~-~g~---~d~~i~vwd~~~~~ 303 (340)
T 1got_B 266 HDNIICGITSVSFSKSGRLLL-AGY---DDFNCNVWDALKAD 303 (340)
T ss_dssp CTTCCSCEEEEEECTTSSEEE-EEE---TTSEEEEEETTTCC
T ss_pred cCCcccceEEEEECCCCCEEE-EEC---CCCeEEEEEcccCc
Confidence 111111233345566777444 322 23678889988776
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6.2e-08 Score=101.54 Aligned_cols=111 Identities=9% Similarity=0.066 Sum_probs=74.9
Q ss_pred CCCcEEEEecCCCCCCCCCCCch-hHHHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNS-SRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 481 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~-~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 481 (648)
...|+||++||..+.. ...|.. ....|+++ +|.|+++|+||+|... +..+.. .-....+|+.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~~--~~~~~a~~l~~ll~~L~~~~g 142 (450)
T 1rp1_A 68 TDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKGSQTS--YTQAAN--NVRVVGAQVAQMLSMLSANYS 142 (450)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHHHSSC--HHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccccCCc--chHHHH--HHHHHHHHHHHHHHHHHHhcC
Confidence 4468999999954433 223444 23456654 8999999999876532 111100 001123566677777764323
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
++.+++.++|+||||.+|+.++.++|+ ++.+++..|..
T Consensus 143 ~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa~ 180 (450)
T 1rp1_A 143 YSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPVE 180 (450)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCCC
T ss_pred CChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCccc
Confidence 467899999999999999999999998 99988776643
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.4e-06 Score=87.64 Aligned_cols=200 Identities=13% Similarity=0.090 Sum_probs=116.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-c-cCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-L-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++|+-... +| .|+++|+.+++.+... . ......++|+|++ .++.+...+ ..|.++++
T Consensus 141 ~V~~v~~spdg~~l~sgs~-dg----~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~d----g~v~~wd~ 211 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGK-DF----SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGED----GRILLWDT 211 (357)
T ss_dssp CEEEEEECSSSSEEEEEET-TS----CEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETT----SCEEECCT
T ss_pred CEEEEEECCCCCEEEEEeC-CC----eEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccC----CceEEEEC
Confidence 4678899999999886543 34 6899999998866421 1 2234568999998 666655432 34778888
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEEe
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITR 237 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~ 237 (648)
.++.......+ .........+.|+|++..+++... ....|+++|+.+++..+.+......+ ...|+|+|+.+++..
T Consensus 212 ~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~~la~g~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 212 RKPKPATRIDF-CASDTIPTSVTWHPEKDDTFACGD--ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp TSSSCBCBCCC-TTCCSCEEEEEECTTSTTEEEEEE--SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEE
T ss_pred CCCceeeeeee-ccccccccchhhhhcccceEEEee--cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEE
Confidence 77632211111 112233457889998765554332 23468889998876233333333333 345899987655544
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcCCCCC
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGE 302 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~~~g~ 302 (648)
..+ ..|.+.|++... ......+.. .+..+.+.+ ..+++....++ .+.+|+++..+.
T Consensus 289 s~D----~~i~iwd~~~~~-~~~~~~H~~--~V~~vafsP~d~~~l~s~s~Dg--~v~iW~~~~~~~ 346 (357)
T 4g56_B 289 SED----CTVAVLDADFSE-VFRDLSHRD--FVTGVAWSPLDHSKFTTVGWDH--KVLHHHLPSEGR 346 (357)
T ss_dssp ETT----SCEEEECTTSCE-EEEECCCSS--CEEEEEECSSSTTEEEEEETTS--CEEEEECC----
T ss_pred eCC----CEEEEEECCCCc-EeEECCCCC--CEEEEEEeCCCCCEEEEEcCCC--eEEEEECCCCCc
Confidence 332 357777887632 222444433 356666653 34555555555 577778875443
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-07 Score=97.23 Aligned_cols=128 Identities=16% Similarity=0.093 Sum_probs=80.6
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC-CCchhHHHHHHC-CCEEEEEccCCCCCCChhhhhcc---ccc---
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENG---KFL--- 460 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~---~~~--- 460 (648)
....++......+ ....|+ |++|||.+..... ........++++ |+.|++.|.||.|.... ..... ...
T Consensus 23 f~qRy~~~~~~~~-~~g~Pi-~l~~Ggeg~~~~~~~~~g~~~~lA~~~~~~Vi~~DhRg~G~S~p-~~~~~~~~~~~l~~ 99 (446)
T 3n2z_B 23 FNQRYLVADKYWK-KNGGSI-LFYTGNEGDIIWFCNNTGFMWDVAEELKAMLVFAEHRYYGESLP-FGDNSFKDSRHLNF 99 (446)
T ss_dssp EEEEEEEECTTCC-TTTCEE-EEEECCSSCHHHHHHHCHHHHHHHHHHTEEEEEECCTTSTTCCT-TGGGGGSCTTTSTT
T ss_pred EEEEEEEehhhcC-CCCCCE-EEEeCCCCcchhhhhcccHHHHHHHHhCCcEEEEecCCCCCCCC-CCccccccchhhcc
Confidence 4444444444321 223564 5558887643210 011223455654 89999999999886632 11100 001
Q ss_pred -CCCCcHhHHHHHHHHHHHcC-CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 461 -KKKNTFTDFIACAEYLIKNC-YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 461 -~~~~~~~D~~~~~~~l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
.-+..++|+...+++|.... .....++.++|+||||.+++.++.++|+++.++|+.++.
T Consensus 100 lt~~q~~~Dl~~~~~~l~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssap 160 (446)
T 3n2z_B 100 LTSEQALADFAELIKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAP 160 (446)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCC
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEeccc
Confidence 11245788888888887642 123358999999999999999999999999999987644
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6.8e-06 Score=85.81 Aligned_cols=149 Identities=11% Similarity=-0.031 Sum_probs=95.4
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
.+.|||||++|+..... | .|+++|+.+++.... ..........|+||+ .|+....+ ..|..+++.++
T Consensus 61 ~~~~s~~g~~l~~~~~d-~----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~- 129 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLD-G----HDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTE-----GDIKVLDSNFN- 129 (420)
T ss_dssp TCEEEEEETTEEEEEET-T----EEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETT-----SCEEEECTTSC-
T ss_pred ceeeeecCCeEEEEEcC-C----cEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECC-----CCEEEEeCCCc-
Confidence 57899999999887652 3 799999988765432 122334446789999 65544332 34778888765
Q ss_pred CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEEeccCC
Q 006375 163 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSDE 241 (648)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~~~~~ 241 (648)
+....+.. .......+.|+||+++|+..+. +..|+++|+.+++....+......+ ...|+|+|+.|+..+..
T Consensus 130 -~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-- 202 (420)
T 3vl1_A 130 -LQREIDQA-HVSEITKLKFFPSGEALISSSQ---DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD-- 202 (420)
T ss_dssp -EEEEETTS-SSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETT--
T ss_pred -ceeeeccc-ccCccEEEEECCCCCEEEEEeC---CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCC--
Confidence 22222222 2334557899999998875443 3579999998876334444333333 34699999987755543
Q ss_pred CCCcEEEEEeCCC
Q 006375 242 LFNSELLACPVDN 254 (648)
Q Consensus 242 ~~~~~l~~~~~~~ 254 (648)
..|...|+.+
T Consensus 203 ---~~v~iwd~~~ 212 (420)
T 3vl1_A 203 ---GTIRLWECGT 212 (420)
T ss_dssp ---SCEEEEETTT
T ss_pred ---CcEEEeECCC
Confidence 3567777765
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-05 Score=82.89 Aligned_cols=201 Identities=10% Similarity=0.068 Sum_probs=121.2
Q ss_pred EEEeeEEeCC-CCCEEEEEEeCCCCeEEEEEEEECCCCCe-------eec-c-ccCccceeEEecCC-eEEEEEeCCCCC
Q 006375 81 YSVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTP-------VGK-P-LVGVTASVEWAGNE-ALVYITMDEILR 149 (648)
Q Consensus 81 ~~~~~~~~SP-DG~~la~~~~~~G~e~~~l~v~dl~~g~~-------~~~-~-~~~~~~~~~WspDg-~l~y~~~~~~~~ 149 (648)
-.+..+.||| |+++||.... +| .|.+||+.++.. ... . -......++|+||+ .++++...+
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~-dg----~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d--- 153 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSE-DC----TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD--- 153 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEET-TS----EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT---
T ss_pred CCEEEEEeCCCCCCEEEEEeC-CC----eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC---
Confidence 3678899999 8998876653 34 799999998742 211 1 12234569999998 777776533
Q ss_pred CceEEEEECCCCCCCcEEEEe-ecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEe-eeccc--ceeee
Q 006375 150 PDKAWLHKLEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL-TPRVV--GVDTA 225 (648)
Q Consensus 150 ~~~l~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l-~~~~~--~~~~~ 225 (648)
..|..+++.++ +....+. .........+.|+|||++|+..+. +..|+++|+.+++....+ ..... .....
T Consensus 154 -g~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 227 (402)
T 2aq5_A 154 -NVILVWDVGTG--AAVLTLGPDVHPDTIYSVDWSRDGALICTSCR---DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV 227 (402)
T ss_dssp -SCEEEEETTTT--EEEEEECTTTCCSCEEEEEECTTSSCEEEEET---TSEEEEEETTTTEEEEEEECSSCSSSCCEEE
T ss_pred -CEEEEEECCCC--CccEEEecCCCCCceEEEEECCCCCEEEEEec---CCcEEEEeCCCCceeeeeccCCCCCcceEEE
Confidence 34888898876 2333331 122334557899999998886543 357999999887622223 12222 13356
Q ss_pred EeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEe--CCEEEEEEecCCeeEEEEEEcCC
Q 006375 226 ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 226 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
|+|+|..|+..... ..+..|...|+.................+..+.+. ++.+++....++ .+.+|++..
T Consensus 228 ~~~~~~~l~~g~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg--~i~i~d~~~ 299 (402)
T 2aq5_A 228 FVSEGKILTTGFSR--MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS--SIRYFEITS 299 (402)
T ss_dssp ECSTTEEEEEEECT--TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS--CEEEEEECS
T ss_pred EcCCCcEEEEeccC--CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC--eEEEEEecC
Confidence 89998755544221 23468888898764332222221112224455554 456655554444 677888874
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=3e-05 Score=80.95 Aligned_cols=238 Identities=12% Similarity=0.079 Sum_probs=131.9
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-c-ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..+.|||||++|+-... +| .|+|||+.+++.... . -.+....++|+|||.++.+...+ ..|..+++.
T Consensus 110 ~V~~~~~~p~~~~l~s~s~-Dg----~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D----~~i~iwd~~ 180 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASE-DA----TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD----MTIKLWDFQ 180 (410)
T ss_dssp CEEEEEECSSSSEEEEEES-SS----CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT----SCCCEEETT
T ss_pred cEEEEEEcCCCCEEEEEeC-CC----eEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCC----CeEEEEeCC
Confidence 5678899999998876543 33 799999999876532 1 12234569999999544555432 235566776
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEeecCCEEEEEec
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRR 238 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~~~ 238 (648)
+. +....+..+ ......+.|+|||++|+..+. +..|.++|+.++.....+......+. ..++++|..|+..+.
T Consensus 181 ~~--~~~~~~~~h-~~~V~~v~~~p~~~~l~s~s~---D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~ 254 (410)
T 1vyh_C 181 GF--ECIRTMHGH-DHNVSSVSIMPNGDHIVSASR---DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254 (410)
T ss_dssp SS--CEEECCCCC-SSCEEEEEECSSSSEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CC--ceeEEEcCC-CCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC
Confidence 64 222222222 233457889999998875443 45789999988762233333333332 458888886655544
Q ss_pred cCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC---------------------CEEEEEEecCCeeEEEEEEc
Q 006375 239 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI---------------------DHLAVYEREGGLQKITTYRL 297 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~l~~~~~~~~~~~l~v~~~ 297 (648)
. ..|...|+........+..+.. .+..+.+.+ ..+++....++ .+.+|++
T Consensus 255 D-----~~v~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~--~i~iwd~ 325 (410)
T 1vyh_C 255 D-----QTVRVWVVATKECKAELREHRH--VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK--TIKMWDV 325 (410)
T ss_dssp T-----SCEEEEETTTCCEEEEECCCSS--CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS--EEEEEET
T ss_pred C-----CeEEEEECCCCceeeEecCCCc--eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC--eEEEEEC
Confidence 3 3466667765322221222221 234444433 22344455554 5778888
Q ss_pred CCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 298 PAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 298 ~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
.. +..+ ..+......+..+.+++++..+ ++.+ .-..+..+|..+++
T Consensus 326 ~~-~~~~--------~~~~~h~~~v~~v~~~~~g~~l-~s~s---~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 326 ST-GMCL--------MTLVGHDNWVRGVLFHSGGKFI-LSCA---DDKTLRVWDYKNKR 371 (410)
T ss_dssp TT-TEEE--------EEEECCSSCEEEEEECSSSSCE-EEEE---TTTEEEEECCTTSC
T ss_pred CC-CceE--------EEEECCCCcEEEEEEcCCCCEE-EEEe---CCCeEEEEECCCCc
Confidence 73 2211 1111111123334455566643 3333 23578888887765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-05 Score=90.59 Aligned_cols=194 Identities=10% Similarity=0.005 Sum_probs=116.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++||.... +| .|+|||+.+++..... -.+....++|+||+ .|+.... ...|..+++
T Consensus 57 ~v~~~~~s~~~~~l~~~~~-dg----~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~ 126 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSD-DF----RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-----DLTVKLWNW 126 (814)
T ss_dssp CEEEEEEEGGGTEEEEEET-TS----EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSEEEEEEG
T ss_pred cEEEEEEeCCCCEEEEEeC-CC----eEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcC-----CCEEEEEEC
Confidence 4678999999999998765 33 7999999998865421 22334569999999 6654332 234778888
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCC-CCcEEEEEEccccccEEEEEECCCCCceeEeeecc-cc-eeeeEee--cCCEE
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-VG-VDTAASH--RGNHF 233 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~-~~-~~~~~s~--dg~~l 233 (648)
.++. .....+... ......+.|+| |++.|+..+. ...|+++|+.++.....+.... .. ....|+| +|..|
T Consensus 127 ~~~~-~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~---dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 127 ENNW-ALEQTFEGH-EHFVMCVAFNPKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp GGTS-EEEEEEECC-SSCEEEEEEETTEEEEEEEEET---TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred CCCc-eEEEEEcCC-CCcEEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence 7652 122333332 33455788999 7777765443 3568999998766222232222 22 2345777 88766
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcCC
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~ 299 (648)
+..+.. ..|...|+........+..+.. .+..+.+.++. +++....++ .+.+|++..
T Consensus 202 ~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg--~v~vwd~~~ 259 (814)
T 3mkq_A 202 ITASDD-----LTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDG--TLKIWNSST 259 (814)
T ss_dssp EEECTT-----SEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTS--CEEEEETTT
T ss_pred EEEeCC-----CEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCC--eEEEEECCC
Confidence 655443 4688888866332221322322 35556665542 334444444 577778764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-05 Score=88.18 Aligned_cols=246 Identities=12% Similarity=0.086 Sum_probs=133.0
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCC----Ceeec-c-ccCc-cceeEEec--CCeEEEEEeCCCCCCce
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG----TPVGK-P-LVGV-TASVEWAG--NEALVYITMDEILRPDK 152 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g----~~~~~-~-~~~~-~~~~~Wsp--Dg~l~y~~~~~~~~~~~ 152 (648)
.+..+.|||||++||+.. +| .|.++|++++ +.... . -.+. ...++|+| |+.++++... ...
T Consensus 20 ~v~~~~~spdg~~l~~~~--~~----~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~----dg~ 89 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC--GK----SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE----SGK 89 (615)
T ss_dssp CCCCCEEETTTTEEEEEE--TT----EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET----TSE
T ss_pred ceeEEEECCCCCEEEEec--CC----eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecC----CCE
Confidence 355789999999999987 23 6999999987 54322 1 1233 45699999 9944444432 234
Q ss_pred EEEEECCCC------CCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcccc-ccEEEEEECCCCCceeEeeecccce-ee
Q 006375 153 AWLHKLEAD------QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI-TRFVFYLDVSKPEELRVLTPRVVGV-DT 224 (648)
Q Consensus 153 l~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~-~~~l~~~dl~~~~~~~~l~~~~~~~-~~ 224 (648)
|..+++.++ .......+... ......+.|+|||++|+....... ...|+++| .++....+......+ ..
T Consensus 90 v~vw~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~ 166 (615)
T 1pgu_A 90 VIVWGWTFDKESNSVEVNVKSEFQVL-AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINAC 166 (615)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECC-SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEE
T ss_pred EEEEeCCCCcccccccccccchhhcc-cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEE
Confidence 666666433 11122222222 233457899999999987665432 35788887 333233343333332 34
Q ss_pred eEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEec-CCC-CcccceEEEeCC--EEEEEEecCCeeEEEEEEcCCC
Q 006375 225 AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIP-HRE-SVKLQDIQLFID--HLAVYEREGGLQKITTYRLPAV 300 (648)
Q Consensus 225 ~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~~~~ 300 (648)
.|+|+++.+++....+ ..|...|+.... ....+. +.. ...+..+.+.++ ..++....++ .+.+|++..
T Consensus 167 ~~~~~~~~~l~~~~~d----~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~- 238 (615)
T 1pgu_A 167 HLKQSRPMRSMTVGDD----GSVVFYQGPPFK-FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR--KISCFDGKS- 238 (615)
T ss_dssp EECSSSSCEEEEEETT----TEEEEEETTTBE-EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC--CEEEEETTT-
T ss_pred EECCCCCcEEEEEeCC----CcEEEEeCCCcc-eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC--eEEEEECCC-
Confidence 5899998554544432 467777876522 222333 222 003556666654 2333344443 578888864
Q ss_pred CCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 301 GEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 301 g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
+..+..+.... . .....+..+.+. ++..+ ++.+. -..+..+|+.+++.
T Consensus 239 ~~~~~~~~~~~---~-~~~~~v~~~~~~-~~~~l-~~~~~---d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 239 GEFLKYIEDDQ---E-PVQGGIFALSWL-DSQKF-ATVGA---DATIRVWDVTTSKC 286 (615)
T ss_dssp CCEEEECCBTT---B-CCCSCEEEEEES-SSSEE-EEEET---TSEEEEEETTTTEE
T ss_pred CCEeEEecccc---c-ccCCceEEEEEc-CCCEE-EEEcC---CCcEEEEECCCCcE
Confidence 22221110000 0 111123333444 55533 33332 26788999988773
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=9.2e-05 Score=76.14 Aligned_cols=249 Identities=13% Similarity=0.132 Sum_probs=137.3
Q ss_pred EEeeEEeCCCC-CEEEEEEeCCCCeEEEEEEEECCCCCeeec-c---ccCccceeEEecC-CeEEEEEeCCCCCCceEEE
Q 006375 82 SVGCFQVSPDN-KLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P---LVGVTASVEWAGN-EALVYITMDEILRPDKAWL 155 (648)
Q Consensus 82 ~~~~~~~SPDG-~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~---~~~~~~~~~WspD-g~l~y~~~~~~~~~~~l~~ 155 (648)
.+..+.||||| ++||.... +| .|.+||+.+++.... . -.+....++|+|+ +.++++... ...|..
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----d~~i~i 145 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSK-GG----DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI----RGATTL 145 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEB-TS----CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET----TTEEEE
T ss_pred CEEEEEECCCCCCEEEEEcC-CC----eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC----CCEEEE
Confidence 46788999999 77776654 34 699999998876532 1 2223456999995 455555543 235888
Q ss_pred EECCCCCCCcEEEEeecC--CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCE
Q 006375 156 HKLEADQSNDICLYHEKD--DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNH 232 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~--~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~ 232 (648)
+++.+. ....+.... ......+.|+||+++|+..+. ...|+++|+.+.. ...+......+ ...|+|+++.
T Consensus 146 wd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~-~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 146 RDFSGS---VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS---TGRLLLLGLDGHE-IFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EETTSC---EEEEEECCCCSSCCEEEEEEETTTTEEEEEET---TSEEEEEETTSCE-EEEEECSSSCEEEEEECSSCTT
T ss_pred EECCCC---ceEEEeccCCCCCCeEEEEECCCCCEEEEECC---CCCEEEEECCCCE-EEEeccCCCcEEEEEECCCCCC
Confidence 888753 233333222 233557889999998876543 3679999995433 44444333333 3569999985
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCc-cee--EecCCCCcccceEEEeC-C-EEEEEEecCCeeEEEEEEcCCCCCccccc
Q 006375 233 FFITRRSDELFNSELLACPVDNTSE-TTV--LIPHRESVKLQDIQLFI-D-HLAVYEREGGLQKITTYRLPAVGEPLKSL 307 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~-~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~l 307 (648)
++++...+ ..|...|+..... ... .+.+.. .+..+.+.+ + ..++....+ ..+.+|++... ..+..+
T Consensus 219 ~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~l~~~~~d--~~i~iwd~~~~-~~~~~~ 289 (383)
T 3ei3_B 219 LMATSSVD----ATVKLWDLRNIKDKNSYIAEMPHEK--PVNAAYFNPTDSTKLLTTDQR--NEIRVYSSYDW-SKPDQI 289 (383)
T ss_dssp EEEEEETT----SEEEEEEGGGCCSTTCEEEEEECSS--CEEEEEECTTTSCEEEEEESS--SEEEEEETTBT-TSCSEE
T ss_pred EEEEEeCC----CEEEEEeCCCCCcccceEEEecCCC--ceEEEEEcCCCCCEEEEEcCC--CcEEEEECCCC-cccccc
Confidence 44444432 3677777764221 111 333332 356666665 3 233344443 36888888742 211111
Q ss_pred CCCceeecCCCeeeeeCCCCcccccEEEEEEe-----eCCCCCEEEEEECCCCcE
Q 006375 308 QGGKSVEFIDPVYSIDPSESVFSSRILRFHYS-----SLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 308 ~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~s-----s~~~P~~~~~~d~~~~~~ 357 (648)
........ .....+. ..+.+++..+.+.++ +-..-..++.+|+.+++.
T Consensus 290 ~~~~~~~~-~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 290 IIHPHRQF-QHLTPIK-ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGL 342 (383)
T ss_dssp EECCBCCC-TTSCCCC-CEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCE
T ss_pred cccccccc-ccccceE-EeccCCCCceEEEecCCcccccCCCCeEEEEecCCCce
Confidence 00000000 0000111 123344444444433 223557799999988873
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=3e-05 Score=78.58 Aligned_cols=197 Identities=9% Similarity=0.006 Sum_probs=112.4
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-c--ccCccceeEEecC---CeEEEEEeCCCCCCceEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P--LVGVTASVEWAGN---EALVYITMDEILRPDKAWL 155 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~--~~~~~~~~~WspD---g~l~y~~~~~~~~~~~l~~ 155 (648)
.+..+.|||||+.++.+.... .+...|++||+.+++.... . -......++|+|+ |.++++...+ ..|..
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d----g~i~i 94 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFA-RGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG----GNLHI 94 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT----SCEEE
T ss_pred ceEEEEEcCCCceEEEecCcc-CCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC----CeEEE
Confidence 567889999998877665431 0135899999999886532 1 2223456999999 6444444322 34888
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEE------EeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeeccc----ce-e
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGL------QASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVV----GV-D 223 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~------~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~----~~-~ 223 (648)
+++.++.. ....+..... ....+ .|+||+++|+..+. ...|.++|+.+++ ....+..... .+ .
T Consensus 95 wd~~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~s~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 95 WNLEAPEM-PVYSVKGHKE-IINAIDGIGGLGIGEGAPEIVTGSR---DGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp ECTTSCSS-CSEEECCCSS-CEEEEEEESGGGCC-CCCEEEEEET---TSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred EeCCCCCc-cEEEEEeccc-ceEEEeeccccccCCCccEEEEEeC---CCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 88887631 2333433322 22233 46899998876543 3468889988765 2344432221 11 1
Q ss_pred ee----EeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC----CEEEEEEecCCeeEEEEE
Q 006375 224 TA----ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI----DHLAVYEREGGLQKITTY 295 (648)
Q Consensus 224 ~~----~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~l~v~ 295 (648)
.. +++++..|+..+.. ..|...|+.... ......+.. .+..+.+.+ +..++....++ .+.++
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~-~~~~~~~~~--~v~~~~~~~~~~~~~~l~~~~~dg--~i~i~ 239 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMA-LRWETNIKN--GVCSLEFDRKDISMNKLVATSLEG--KFHVF 239 (357)
T ss_dssp EEEECCCC-CCCEEEEEETT-----SEEEEEETTTTE-EEEEEECSS--CEEEEEESCSSSSCCEEEEEESTT--EEEEE
T ss_pred EEEEeccCCCCCEEEEEccC-----CeEEEEECccCc-eeeecCCCC--ceEEEEcCCCCCCCCEEEEECCCC--eEEEE
Confidence 12 67888877665543 478888887633 222333332 355666653 23344444444 56677
Q ss_pred EcC
Q 006375 296 RLP 298 (648)
Q Consensus 296 ~~~ 298 (648)
++.
T Consensus 240 d~~ 242 (357)
T 3i2n_A 240 DMR 242 (357)
T ss_dssp EEE
T ss_pred eCc
Confidence 776
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-05 Score=80.52 Aligned_cols=194 Identities=10% Similarity=0.082 Sum_probs=105.3
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec--cc---cCccceeEEecCC-eEEEEEeCCCCCCceEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PL---VGVTASVEWAGNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~--~~---~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~ 155 (648)
.+..+.|||||++||-... +| +|+|||+++++.... .. ......++|+||| .|+....+ ..+.+
T Consensus 18 ~v~~l~~sp~g~~las~~~-D~----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-----~~v~i 87 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGG-DR----RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-----ATTCI 87 (345)
T ss_dssp CEEEEEECTTSSCEEEEET-TS----CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred cEEEEEECCCCCEEEEEcC-CC----eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-----CcEEE
Confidence 4557899999999986653 23 688999988764311 11 1234569999999 55544332 23556
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeE---eeecccce-eeeEeecCC
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV---LTPRVVGV-DTAASHRGN 231 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~---l~~~~~~~-~~~~s~dg~ 231 (648)
+++.++..+....+..+ ......+.|+|||++|+..+.+ ..|+++|+.++..... +......+ ...|+|+++
T Consensus 88 w~~~~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGH-ENEVKSVAWAPSGNLLATCSRD---KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEECCC-EEEEEEECCC-SSCEEEEEECTTSSEEEEEETT---SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEccCCCeEEEEEccCC-CCCceEEEEeCCCCEEEEEECC---CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 66655421122233322 2344578999999988754432 4577788776541222 22222222 245999998
Q ss_pred EEEEEeccCCCCCcEEEEEeCCCCCcce-eEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEc
Q 006375 232 HFFITRRSDELFNSELLACPVDNTSETT-VLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRL 297 (648)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~ 297 (648)
.|+..+.. + .|...+........ ..+... ...+..+.+.++. .++....++. +.+|+.
T Consensus 164 ~l~s~s~d-~----~i~~w~~~~~~~~~~~~~~~h-~~~v~~l~~sp~g~~l~s~s~D~~--v~iW~~ 223 (345)
T 3fm0_A 164 LLASASYD-D----TVKLYREEEDDWVCCATLEGH-ESTVWSLAFDPSGQRLASCSDDRT--VRIWRQ 223 (345)
T ss_dssp CEEEEETT-S----CEEEEEEETTEEEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSC--EEEEEE
T ss_pred EEEEEeCC-C----cEEEEEecCCCEEEEEEecCC-CCceEEEEECCCCCEEEEEeCCCe--EEEecc
Confidence 77666553 2 34444443311111 122222 2235666666542 3444555554 555554
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.1e-05 Score=78.72 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=87.8
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-ecccc---CccceeEEecCCeEEEEEeCCCCCCceEEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GKPLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-~~~~~---~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~ 157 (648)
.+..+.|||||++||.... +| ++.+|++.++... ...+. +....++|+|||.++++...+ ..|+.++
T Consensus 63 ~v~~~~~sp~g~~l~s~s~-D~----~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D----~~v~iwd 133 (345)
T 3fm0_A 63 TVRKVAWSPCGNYLASASF-DA----TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD----KSVWVWE 133 (345)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEE
T ss_pred cEEEEEECCCCCEEEEEEC-CC----cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC----CeEEEEE
Confidence 5678999999999987653 33 5788888776532 11222 234569999999444444322 2477777
Q ss_pred CCCCCCCc-EEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeE---eeecccce-eeeEeecCCE
Q 006375 158 LEADQSND-ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV---LTPRVVGV-DTAASHRGNH 232 (648)
Q Consensus 158 l~~~~~~~-~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~---l~~~~~~~-~~~~s~dg~~ 232 (648)
+.++.... ...+... ......+.|+||+++|+..+.+ ..|.++|+.++. ... +......+ ...|+|+|+.
T Consensus 134 ~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~d---~~i~~w~~~~~~-~~~~~~~~~h~~~v~~l~~sp~g~~ 208 (345)
T 3fm0_A 134 VDEEDEYECVSVLNSH-TQDVKHVVWHPSQELLASASYD---DTVKLYREEEDD-WVCCATLEGHESTVWSLAFDPSGQR 208 (345)
T ss_dssp ECTTSCEEEEEEECCC-CSCEEEEEECSSSSCEEEEETT---SCEEEEEEETTE-EEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCCCCeEEEEEecCc-CCCeEEEEECCCCCEEEEEeCC---CcEEEEEecCCC-EEEEEEecCCCCceEEEEECCCCCE
Confidence 76652211 1122222 2334568899999988755433 346666666554 222 22222222 3459999997
Q ss_pred EEEEeccCCCCCcEEEEE
Q 006375 233 FFITRRSDELFNSELLAC 250 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~ 250 (648)
|+..+.+ ...+|+..
T Consensus 209 l~s~s~D---~~v~iW~~ 223 (345)
T 3fm0_A 209 LASCSDD---RTVRIWRQ 223 (345)
T ss_dssp EEEEETT---SCEEEEEE
T ss_pred EEEEeCC---CeEEEecc
Confidence 7665543 23455544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00031 Score=76.23 Aligned_cols=249 Identities=13% Similarity=0.055 Sum_probs=134.9
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECC--CCCeeecc-ccCccceeEEe----cCC-eEEEEEeCCCCCCceEEE
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIE--TGTPVGKP-LVGVTASVEWA----GNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~--~g~~~~~~-~~~~~~~~~Ws----pDg-~l~y~~~~~~~~~~~l~~ 155 (648)
..+.+||||++|..+ +..| .|.++|+. +++.+... ....-..+++| ||| ++|..... +..|..
T Consensus 200 ~~v~~SpDGr~lyv~-~~dg----~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~----~~~v~V 270 (567)
T 1qks_A 200 HISRLSASGRYLFVI-GRDG----KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW----PPQYVI 270 (567)
T ss_dssp EEEEECTTSCEEEEE-ETTS----EEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE----TTEEEE
T ss_pred cceEECCCCCEEEEE-cCCC----eEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEcc----CCeEEE
Confidence 378999999986554 4444 69999996 77655321 11223458999 699 66554432 345777
Q ss_pred EECCCCCCCcEEEEeec----C------CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee---cccce
Q 006375 156 HKLEADQSNDICLYHEK----D------DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP---RVVGV 222 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~----~------~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~---~~~~~ 222 (648)
++..+.. ........ + ..-...+..|+++..++++. .....|+++|..+.+ ...++. ...-.
T Consensus 271 iD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~--~~~g~v~~vd~~~~~-~~~v~~i~~~~~~~ 345 (567)
T 1qks_A 271 MDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV--KETGKILLVDYTDLN-NLKTTEISAERFLH 345 (567)
T ss_dssp EETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEETTCSS-EEEEEEEECCSSEE
T ss_pred EECCCCc--EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe--cCCCeEEEEecCCCc-cceeeeeecccccc
Confidence 7876652 22222110 0 11123466788887766644 556799999998765 222221 11112
Q ss_pred eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecC-CCCccc-ceEEE-eCC-EEEEEEecCCeeEEEEEEcC
Q 006375 223 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPH-RESVKL-QDIQL-FID-HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 223 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~-~~~-~l~~~~~~~~~~~l~v~~~~ 298 (648)
...|+|||++++...+.. .+|.++|.++. +....++. ...... .+..+ ..+ .-++...+-+...+.+++.+
T Consensus 346 d~~~~pdgr~~~va~~~s----n~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 346 DGGLDGSHRYFITAANAR----NKLVVIDTKEG-KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp EEEECTTSCEEEEEEGGG----TEEEEEETTTT-EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred CceECCCCCEEEEEeCCC----CeEEEEECCCC-cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence 345999999887776642 37889999863 33223333 211111 12222 332 44445555555678999887
Q ss_pred CCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCC-----CEEEEEECCCC
Q 006375 299 AVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTP-----PSVYDYDMDMG 355 (648)
Q Consensus 299 ~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P-----~~~~~~d~~~~ 355 (648)
..+.....+...+.+..... .++ .+..++++..+++. ++..| ..+..+|..+.
T Consensus 421 ~~~~~~~~~kvv~~i~~~g~-g~~-~i~~~p~~~~l~v~--~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 421 PEGHPDNAWKILDSFPALGG-GSL-FIKTHPNSQYLYVD--ATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTTCTTTBTSEEEEEECSCS-CCC-CEECCTTCSEEEEE--CTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCCccccCEEEEEEecCCC-CCE-EEEeCCCCCeEEEe--cCCCCCcccCceEEEEECCcc
Confidence 53221111111123332211 111 02245777766654 44444 37888887765
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.2e-05 Score=79.11 Aligned_cols=252 Identities=10% Similarity=0.113 Sum_probs=129.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCe-----------ee-cccc-------------CccceeEEecC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-----------VG-KPLV-------------GVTASVEWAGN 136 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~-----------~~-~~~~-------------~~~~~~~WspD 136 (648)
.+..+.|||||++||.... +| .|+|||+.+++. .. .... .....++|+|+
T Consensus 30 ~V~~v~~s~~g~~la~g~~-dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDK-GG----RVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp SEEEEEECSSSSEEEEEET-TS----EEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cEEEEEECCCCCEEEEEcC-CC----eEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 4678899999999987654 34 789999987762 11 1111 22456999999
Q ss_pred C--eEEEEEeCCCCCCceEEEEECCCCCCC-------------------------------------cEEEEeecCCCeE
Q 006375 137 E--ALVYITMDEILRPDKAWLHKLEADQSN-------------------------------------DICLYHEKDDIYS 177 (648)
Q Consensus 137 g--~l~y~~~~~~~~~~~l~~~~l~~~~~~-------------------------------------~~~~~~~~~~~~~ 177 (648)
+ ..+++...+ ..|..+++.++... ....+........
T Consensus 105 ~~~~~l~s~s~d----~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 105 KNAAQFLLSTND----KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp CSSSEEEEEECS----SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred CCcceEEEeCCC----CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 7 565665432 22555554332100 0012211222233
Q ss_pred EEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEe-------eecccce-eeeEeecC-CEEEEEeccCCCCCcEE
Q 006375 178 LGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVL-------TPRVVGV-DTAASHRG-NHFFITRRSDELFNSEL 247 (648)
Q Consensus 178 ~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l-------~~~~~~~-~~~~s~dg-~~l~~~~~~~~~~~~~l 247 (648)
..+.|+|||++|+.. .+..|.++|+.+.. ....+ ......+ ...|+|+| ..|+..+.. ..|
T Consensus 181 ~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i 251 (447)
T 3dw8_B 181 NSISINSDYETYLSA----DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK-----GTI 251 (447)
T ss_dssp CEEEECTTSSEEEEE----CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT-----SCE
T ss_pred EEEEEcCCCCEEEEe----CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC-----CeE
Confidence 467899999988752 25788999998432 12211 1111112 24599998 655554443 367
Q ss_pred EEEeCCCCCcc---eeEecCCCC-----------cccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCcee
Q 006375 248 LACPVDNTSET---TVLIPHRES-----------VKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 313 (648)
Q Consensus 248 ~~~~~~~~~~~---~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i 313 (648)
...|+...... ...+..... ..+..+.+.++..++....+ ..+.+|++...+..+..+.....+
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCEESCGGG
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCccccceeeccccc
Confidence 77787663320 123333322 13666777665333333333 578888987433322211110000
Q ss_pred ec-------CCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 314 EF-------IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 314 ~~-------~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
.- ....+.+..+.+++++..+ ++.+ .-..++.+|+.+++.
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s---~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVV-MTGS---YNNFFRMFDRNTKRD 376 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEE-EEEC---STTEEEEEETTTCCE
T ss_pred cccccccccccccccceEEEECCCCCEE-EEec---cCCEEEEEEcCCCcc
Confidence 00 0000001113455666654 3332 347899999999884
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.41 E-value=8.6e-07 Score=84.55 Aligned_cols=90 Identities=9% Similarity=0.052 Sum_probs=62.2
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.|+++||..+.. ..|......|. . +.|+.+|++|.+. ..+|+.+.++.+.. .+
T Consensus 17 ~~~l~~~hg~~~~~--~~~~~~~~~l~-~-~~v~~~d~~g~~~----------------~~~~~~~~i~~~~~-----~~ 71 (230)
T 1jmk_C 17 EQIIFAFPPVLGYG--LMYQNLSSRLP-S-YKLCAFDFIEEED----------------RLDRYADLIQKLQP-----EG 71 (230)
T ss_dssp SEEEEEECCTTCCG--GGGHHHHHHCT-T-EEEEEECCCCSTT----------------HHHHHHHHHHHHCC-----SS
T ss_pred CCCEEEECCCCCch--HHHHHHHHhcC-C-CeEEEecCCCHHH----------------HHHHHHHHHHHhCC-----CC
Confidence 47899999966543 23454444444 4 9999999997542 12466666655421 25
Q ss_pred eEEEEeeChhHHHHHHHHhhC---CCceeEEEecCCcc
Q 006375 486 KLCIEGRSAGGLLIGAVLNMR---PDLFKAAVAAVPFV 520 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~---p~~~~a~v~~~~~~ 520 (648)
++.++|+|+||.++..++.+. ++.++++|+..+..
T Consensus 72 ~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~~ 109 (230)
T 1jmk_C 72 PLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYK 109 (230)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCE
T ss_pred CeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCCC
Confidence 799999999999999888764 35688887776543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=6.8e-05 Score=77.86 Aligned_cols=234 Identities=13% Similarity=0.187 Sum_probs=124.1
Q ss_pred EEeeEEeCCCCC-EEEEEEeCCCCeEEEEEEEEC----CCCCe------eec---cc---------cCccceeEEecCC-
Q 006375 82 SVGCFQVSPDNK-LVAYAEDTKGDEIYTVYVIDI----ETGTP------VGK---PL---------VGVTASVEWAGNE- 137 (648)
Q Consensus 82 ~~~~~~~SPDG~-~la~~~~~~G~e~~~l~v~dl----~~g~~------~~~---~~---------~~~~~~~~WspDg- 137 (648)
.+..+.|||||+ +||.... +| .|.+|++ .+++. ... .. .+....++|+|||
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEK-NS----VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp CCSEEEECSSCTTEEEEEET-BT----EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred ceEEEEECCCCCcEEEEecC-Cc----eEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 456889999999 8887653 23 7889999 88772 211 11 1134569999999
Q ss_pred eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee
Q 006375 138 ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP 217 (648)
Q Consensus 138 ~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~ 217 (648)
.|+....+ ..|..++... +....+... ......+.|+||+++|+..+. ...|+++|+.+++....+..
T Consensus 122 ~l~~~~~d-----g~i~i~~~~~---~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 122 SIVTGVEN-----GELRLWNKTG---ALLNVLNFH-RAPIVSVKWNKDGTHIISMDV---ENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp EEEEEETT-----SCEEEEETTS---CEEEEECCC-CSCEEEEEECTTSSEEEEEET---TCCEEEEETTTTEEEEEECC
T ss_pred EEEEEeCC-----CeEEEEeCCC---CeeeeccCC-CccEEEEEECCCCCEEEEEec---CCeEEEEECCCCcEEEEeec
Confidence 55544332 2466777322 233333322 334557899999999886543 35688899987751222221
Q ss_pred ccc----------------ceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE-E
Q 006375 218 RVV----------------GVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-L 280 (648)
Q Consensus 218 ~~~----------------~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 280 (648)
... .....|++++. ++..+.. ..|...++........+..+. ..+..+.+..+. .
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----g~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~ 261 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPK-----GAIFVYQITEKTPTGKLIGHH--GPISVLEFNDTNKL 261 (425)
T ss_dssp C---------------CCCBSCCEEEETTE-EEEECGG-----GCEEEEETTCSSCSEEECCCS--SCEEEEEEETTTTE
T ss_pred cccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCC-----CeEEEEEcCCCceeeeeccCC--CceEEEEECCCCCE
Confidence 111 12234777654 4444332 468888887633322232232 235566665432 3
Q ss_pred EEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 281 AVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 281 ~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
++....++ .+.++++.. +.... . +......+..+.+.+++ ++++.+ .-..++.+|+.+++
T Consensus 262 l~~~~~d~--~i~i~d~~~-~~~~~------~--~~~~~~~i~~~~~~~~~--~l~~~~---~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 262 LLSASDDG--TLRIWHGGN-GNSQN------C--FYGHSQSIVSASWVGDD--KVISCS---MDGSVRLWSLKQNT 321 (425)
T ss_dssp EEEEETTS--CEEEECSSS-BSCSE------E--ECCCSSCEEEEEEETTT--EEEEEE---TTSEEEEEETTTTE
T ss_pred EEEEcCCC--EEEEEECCC-Cccce------E--ecCCCccEEEEEECCCC--EEEEEe---CCCcEEEEECCCCc
Confidence 33444443 577788763 22111 1 11111123334445555 333333 23689999998877
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.40 E-value=5.9e-05 Score=83.26 Aligned_cols=240 Identities=13% Similarity=0.103 Sum_probs=130.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec--cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++||....... ....|+++|. ++.... .-......++|+||+ .++.+...+ ..|..+++
T Consensus 105 ~v~~v~fs~dg~~l~~~~~~~~-~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D----~~v~lwd~ 177 (611)
T 1nr0_A 105 PVKDISWDSESKRIAAVGEGRE-RFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD----NTVAIFEG 177 (611)
T ss_dssp CEEEEEECTTSCEEEEEECCSS-CSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT----SCEEEEET
T ss_pred ceEEEEECCCCCEEEEEECCCC-ceeEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCC----CeEEEEEC
Confidence 4678999999999997764322 1247788774 443221 111234569999999 555555432 23667776
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEee-------ecccce-eeeEeecC
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-------PRVVGV-DTAASHRG 230 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~-------~~~~~~-~~~~s~dg 230 (648)
.+. +....+..+ ......+.|+|||++|+..+. +..|.++|+.+++....+. .....+ ...|+|||
T Consensus 178 ~~~--~~~~~l~~H-~~~V~~v~fspdg~~las~s~---D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg 251 (611)
T 1nr0_A 178 PPF--KFKSTFGEH-TKFVHSVRYNPDGSLFASTGG---DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251 (611)
T ss_dssp TTB--EEEEEECCC-SSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred CCC--eEeeeeccc-cCceEEEEECCCCCEEEEEEC---CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC
Confidence 553 223334333 334557899999998875443 3458888988776222221 122222 24599999
Q ss_pred CEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCC--CcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccC
Q 006375 231 NHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE--SVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQ 308 (648)
Q Consensus 231 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~ 308 (648)
+.|+-.+.. ..|.+.|+.+..... .+.... ......+.+.++.++.. ..++ .+.+++... +...
T Consensus 252 ~~l~s~s~D-----~~v~lWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~-s~d~--~i~~~~~~~--~~~~--- 317 (611)
T 1nr0_A 252 TKIASASAD-----KTIKIWNVATLKVEK-TIPVGTRIEDQQLGIIWTKQALVSI-SANG--FINFVNPEL--GSID--- 317 (611)
T ss_dssp SEEEEEETT-----SEEEEEETTTTEEEE-EEECCSSGGGCEEEEEECSSCEEEE-ETTC--CEEEEETTT--TEEE---
T ss_pred CEEEEEeCC-----CeEEEEeCCCCceee-eecCCCCccceeEEEEEcCCEEEEE-eCCC--cEEEEeCCC--CCcc---
Confidence 977655443 367777876532222 222111 11223445555554433 3443 456667652 2110
Q ss_pred CCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 309 GGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 309 ~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
..+......+..+.+++++..+ ++.+. -..+..+|+.+++
T Consensus 318 ----~~~~gh~~~v~~l~~spdg~~l-~s~s~---D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 318 ----QVRYGHNKAITALSSSADGKTL-FSADA---EGHINSWDISTGI 357 (611)
T ss_dssp ----EEECCCSSCEEEEEECTTSSEE-EEEET---TSCEEEEETTTCC
T ss_pred ----eEEcCCCCCEEEEEEeCCCCEE-EEEeC---CCcEEEEECCCCc
Confidence 1111111124445556777754 33332 3568888998876
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.2e-05 Score=78.60 Aligned_cols=200 Identities=10% Similarity=0.076 Sum_probs=117.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee----c--cccCccceeEEecC---CeEEEEEeCCCCCCce
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG----K--PLVGVTASVEWAGN---EALVYITMDEILRPDK 152 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~----~--~~~~~~~~~~WspD---g~l~y~~~~~~~~~~~ 152 (648)
.+..+.|||||++|+.... .| .|+++++.+++... . .-......++|+|| +.++++...+ ..
T Consensus 151 ~v~~~~~sp~~~~l~~~~~-~g----~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d----~~ 221 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADK-FG----DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD----EH 221 (450)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT----SC
T ss_pred CceEEEEcCCCCEEEEEeC-CC----cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC----Cc
Confidence 3567899999999987753 34 68999998876542 1 11223456999999 7444554432 35
Q ss_pred EEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc-------------
Q 006375 153 AWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV------------- 219 (648)
Q Consensus 153 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~------------- 219 (648)
|+.+++.++. ....+..........+.|+ ||++|+..+ .+..|.++|+.+++....+....
T Consensus 222 i~vwd~~~~~--~~~~~~~~h~~~v~~~~~s-d~~~l~s~~---~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (450)
T 2vdu_B 222 IKISHYPQCF--IVDKWLFGHKHFVSSICCG-KDYLLLSAG---GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAP 295 (450)
T ss_dssp EEEEEESCTT--CEEEECCCCSSCEEEEEEC-STTEEEEEE---SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-
T ss_pred EEEEECCCCc--eeeeeecCCCCceEEEEEC-CCCEEEEEe---CCCeEEEEECCCCcEeeeecchhhhhhhhhhccccc
Confidence 8888887762 2333222223445577899 999988554 34679999999887222222110
Q ss_pred ------------cc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeC--CCCCccee--EecCCCCcccceEEEeCCEEEE
Q 006375 220 ------------VG-VDTAASHRGNHFFITRRSDELFNSELLACPV--DNTSETTV--LIPHRESVKLQDIQLFIDHLAV 282 (648)
Q Consensus 220 ------------~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~ 282 (648)
.. ....++|+|+.|+.....+ ..|.++++ ........ .+... ..+..+.+.++.+++
T Consensus 296 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d----~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v 369 (450)
T 2vdu_B 296 PRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT----KCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQV 369 (450)
T ss_dssp ---------CBCCCEEEEEECSSSSEEEEEETTC----SEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEE
T ss_pred ccccccccccceEEEEEEEEeCCCCEEEEEECCC----CeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEE
Confidence 01 1235889999887776432 34555565 22111121 23322 346788888888777
Q ss_pred EEecCC-----eeEEEEEEcCCCCC
Q 006375 283 YEREGG-----LQKITTYRLPAVGE 302 (648)
Q Consensus 283 ~~~~~~-----~~~l~v~~~~~~g~ 302 (648)
...... ...+.++.++..++
T Consensus 370 ~~~~~~~~~~~~~~i~v~~~~~~~~ 394 (450)
T 2vdu_B 370 TLDNKESSGVQKNFAKFIEYNLNEN 394 (450)
T ss_dssp EECCTTCCSSCCCSEEEEEEETTTT
T ss_pred EEecccCCCCCCcceEEEEEEcCCC
Confidence 665432 22355555543333
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-06 Score=83.08 Aligned_cols=92 Identities=12% Similarity=0.015 Sum_probs=63.1
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
..|.|+++||..+.. ..|......| ..++.|+.+|++|.+. ..+|+.+.++.+. ..
T Consensus 21 ~~~~l~~~hg~~~~~--~~~~~~~~~l-~~~~~v~~~d~~g~~~----------------~~~~~~~~i~~~~-----~~ 76 (244)
T 2cb9_A 21 GGKNLFCFPPISGFG--IYFKDLALQL-NHKAAVYGFHFIEEDS----------------RIEQYVSRITEIQ-----PE 76 (244)
T ss_dssp CSSEEEEECCTTCCG--GGGHHHHHHT-TTTSEEEEECCCCSTT----------------HHHHHHHHHHHHC-----SS
T ss_pred CCCCEEEECCCCCCH--HHHHHHHHHh-CCCceEEEEcCCCHHH----------------HHHHHHHHHHHhC-----CC
Confidence 357899999966543 2345444444 3689999999997421 2355555555432 12
Q ss_pred CeEEEEeeChhHHHHHHHHhhC---CCceeEEEecCCcc
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMR---PDLFKAAVAAVPFV 520 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~---p~~~~a~v~~~~~~ 520 (648)
.++.++|+|+||.++..++.+. ++.++++|+..+..
T Consensus 77 ~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~~ 115 (244)
T 2cb9_A 77 GPYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYK 115 (244)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCC
T ss_pred CCEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCCC
Confidence 5799999999999999888764 56788888776543
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-07 Score=96.74 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=79.1
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCC---EEEEEccCCCCCC-----Ch----hhhhccc--------------
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGF---IFAIAQIRGGGEL-----GR----QWYENGK-------------- 458 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~---~v~~~~~rG~g~~-----g~----~~~~~~~-------------- 458 (648)
+.|.||++||..+.. ..|...+..|.++|| .|+.+|++|.|.. .. .....+.
T Consensus 21 ~~ppVVLlHG~g~s~--~~w~~la~~La~~Gy~~~~Via~DlpG~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~~l~~v 98 (484)
T 2zyr_A 21 DFRPVVFVHGLAGSA--GQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPETLDKI 98 (484)
T ss_dssp CCCCEEEECCTTCCG--GGGHHHHHHHHHTTCCGGGEEEECCCHHHHHHHTTTSTTTTTGGGHHHHHHGGGSCHHHHHHH
T ss_pred CCCEEEEECCCCCCH--HHHHHHHHHHHHcCCCcceEEEEECCCCCcccccccccccccccccccccccccccccccccc
Confidence 457899999965543 346777788899999 6999999987632 00 0000000
Q ss_pred -----ccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCC---CceeEEEecCCccc
Q 006375 459 -----FLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP---DLFKAAVAAVPFVD 521 (648)
Q Consensus 459 -----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~~~a~v~~~~~~d 521 (648)
.......++++.+.++.++++. ..+++.++||||||.++..++.++| +.++++|+.+|..+
T Consensus 99 ~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~ 167 (484)
T 2zyr_A 99 LSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWG 167 (484)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCS
T ss_pred ccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccc
Confidence 0011134577788888877652 2378999999999999999999987 48999999988654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.0002 Score=72.97 Aligned_cols=241 Identities=13% Similarity=0.103 Sum_probs=129.9
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-ccc-CccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~-~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++||-.. .+| .|.|||..+++.... ... .....++|+||| .|+.... ...+..+++
T Consensus 66 ~V~~~~~s~d~~~l~s~s-~Dg----~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~-----d~~i~v~~~ 135 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSS-QDG----KVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL-----DNKCSVYPL 135 (354)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----EEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEEST-----TSEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEe-CCC----eEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeC-----CCCEEEEEE
Confidence 467889999999887554 334 799999988875532 222 224569999999 5544322 234555555
Q ss_pred CCCCC----CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEee--cCC
Q 006375 159 EADQS----NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASH--RGN 231 (648)
Q Consensus 159 ~~~~~----~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~--dg~ 231 (648)
..... .....+..+ ......+.|+||++.|+..+. +..|.++|+.+++....+......+. ..++| +|.
T Consensus 136 ~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~t~s~---D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMH-TNYLSACSFTNSDMQILTASG---DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp CCCTTCCSGGGCEEEEEC-SSCEEEEEECSSSSEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred eccccccccccceeeecc-CCcEEEEEEeCCCCEEEEEeC---CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 43311 112223222 234456789999998875443 35688999988872233333333322 34555 456
Q ss_pred EEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCCCCCcccccCCC
Q 006375 232 HFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGG 310 (648)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~ 310 (648)
.|+..+.. ..|...|+.+..... .+... ...+..+.+.++ ..++....++ .+.+|++... ..+..+
T Consensus 212 ~l~sgs~D-----g~v~~wd~~~~~~~~-~~~~h-~~~v~~v~~~p~~~~l~s~s~D~--~v~lwd~~~~-~~~~~~--- 278 (354)
T 2pbi_B 212 TFVSGGCD-----KKAMVWDMRSGQCVQ-AFETH-ESDVNSVRYYPSGDAFASGSDDA--TCRLYDLRAD-REVAIY--- 278 (354)
T ss_dssp EEEEEETT-----SCEEEEETTTCCEEE-EECCC-SSCEEEEEECTTSSEEEEEETTS--CEEEEETTTT-EEEEEE---
T ss_pred EEEEEeCC-----CeEEEEECCCCcEEE-EecCC-CCCeEEEEEeCCCCEEEEEeCCC--eEEEEECCCC-cEEEEE---
Confidence 55544432 467788887633222 33222 223556666543 2334444444 5777787631 111100
Q ss_pred ceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 311 KSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 311 ~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
........+..+.+++++..+. +.+ .-..+..+|+.+++
T Consensus 279 ---~~~~~~~~~~~~~~s~~g~~l~-~g~---~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 279 ---SKESIIFGASSVDFSLSGRLLF-AGY---NDYTINVWDVLKGS 317 (354)
T ss_dssp ---CCTTCCSCEEEEEECTTSSEEE-EEE---TTSCEEEEETTTCS
T ss_pred ---cCCCcccceeEEEEeCCCCEEE-EEE---CCCcEEEEECCCCc
Confidence 0000011122334456666443 322 23568888988876
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00021 Score=72.25 Aligned_cols=193 Identities=10% Similarity=0.092 Sum_probs=113.3
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee---eccc---cCccceeEEecCCeEEEEEeCCCCCCceEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV---GKPL---VGVTASVEWAGNEALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~---~~~~---~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~ 156 (648)
+....|||||++||.... + ..|.++++.+++.. ...+ .+....+.|++++.++....+ ..|..+
T Consensus 100 v~~~~~s~~~~~l~s~~~-d----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d-----~~i~~w 169 (340)
T 1got_B 100 VMTCAYAPSGNYVACGGL-D----NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD-----TTCALW 169 (340)
T ss_dssp EEEEEECTTSSEEEEEET-T----CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETT-----SCEEEE
T ss_pred EEEEEECCCCCEEEEEeC-C----CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECC-----CcEEEE
Confidence 567899999999987653 2 37899999876421 1111 223445889998876543322 348888
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFI 235 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~ 235 (648)
++.++ +....+..+ ......+.|+||+++++..+. +..|.++|+.++.....+......+ ...|+|+|+.|+.
T Consensus 170 d~~~~--~~~~~~~~h-~~~v~~~~~~~~~~~l~sg~~---d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 243 (340)
T 1got_B 170 DIETG--QQTTTFTGH-TGDVMSLSLAPDTRLFVSGAC---DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243 (340)
T ss_dssp ETTTT--EEEEEECCC-SSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECCCC--cEEEEEcCC-CCceEEEEECCCCCEEEEEeC---CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEE
Confidence 88876 233344333 233457889999998765433 3468888998876222333333333 3458999987765
Q ss_pred EeccCCCCCcEEEEEeCCCCCcceeEecCCC-CcccceEEEeCCE-EEEEEecCCeeEEEEEEcCC
Q 006375 236 TRRSDELFNSELLACPVDNTSETTVLIPHRE-SVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~ 299 (648)
.+.. ..|...|+.... ....+.+.. ...+..+.+.++. +++....++ .+.+|++..
T Consensus 244 ~s~d-----~~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~--~i~vwd~~~ 301 (340)
T 1got_B 244 GSDD-----ATCRLFDLRADQ-ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF--NCNVWDALK 301 (340)
T ss_dssp EETT-----SCEEEEETTTTE-EEEEECCTTCCSCEEEEEECTTSSEEEEEETTS--EEEEEETTT
T ss_pred EcCC-----CcEEEEECCCCc-EEEEEccCCcccceEEEEECCCCCEEEEECCCC--eEEEEEccc
Confidence 5443 357777876522 212333221 1235556665542 333444444 577888763
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.38 E-value=4.8e-05 Score=77.62 Aligned_cols=240 Identities=13% Similarity=0.102 Sum_probs=125.3
Q ss_pred eEEeCCCCCEEEEEEeC-----CCCeEEEEEEEECCCCCeeec-cccC--------ccceeEEecCC-eEEEEEeCCCCC
Q 006375 85 CFQVSPDNKLVAYAEDT-----KGDEIYTVYVIDIETGTPVGK-PLVG--------VTASVEWAGNE-ALVYITMDEILR 149 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~-----~G~e~~~l~v~dl~~g~~~~~-~~~~--------~~~~~~WspDg-~l~y~~~~~~~~ 149 (648)
.+.+||||++|..+... .|.....|.++|.++++.+.. .++. .-..++++||| ++|.... ..
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~---~~ 158 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF---SP 158 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC---SS
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc---CC
Confidence 38999999997666421 222346799999999987642 2221 23459999999 6554422 11
Q ss_pred CceEEEEECCCCCCCcEE-------EEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-
Q 006375 150 PDKAWLHKLEADQSNDIC-------LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG- 221 (648)
Q Consensus 150 ~~~l~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~- 221 (648)
...|..+|+.+....... ++...... + ...++||+.+++.....+.- + +..+ + . +......
T Consensus 159 ~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~-~--~~~~~DG~~~~v~~~~~g~v-~---~~~~-~-~--~~~~~~~~ 227 (386)
T 3sjl_D 159 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT-F--FMHCRDGSLAKVAFGTEGTP-E---ITHT-E-V--FHPEDEFL 227 (386)
T ss_dssp SCEEEEEETTTTEEEEEEECCSEEEEEEEETTE-E--EEEETTSCEEEEECCSSSCC-E---EEEC-C-C--CSCTTSCB
T ss_pred CCeEEEEECCCCcEEEEEECCCcceeecCCCce-e--EEECCCCCEEEEECCCCCeE-E---Eeec-c-e--eccccccc
Confidence 346888898876321111 01111011 1 24567777666654332211 1 1001 0 0 0000000
Q ss_pred -eeeeEe-ecCCEEEEEeccCCCCCcEEEEEeCCCCCc---cee-EecC--------CCCcccceEEEeCCEEEEEEecC
Q 006375 222 -VDTAAS-HRGNHFFITRRSDELFNSELLACPVDNTSE---TTV-LIPH--------RESVKLQDIQLFIDHLAVYEREG 287 (648)
Q Consensus 222 -~~~~~s-~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~---~~~-~~~~--------~~~~~~~~~~~~~~~l~~~~~~~ 287 (648)
....+. ++| .++|.+.. .+++.+|+.+... .+| ++.. ..+.....++..++.+|+....+
T Consensus 228 ~~~~~~~~~dG-~~~~vs~~-----g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~ 301 (386)
T 3sjl_D 228 INHPAYSQKAG-RLVWPTYT-----GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 301 (386)
T ss_dssp CSCCEEETTTT-EEEEEBTT-----SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred cccceeEcCCC-cEEEEeCC-----CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence 012343 455 56677663 3799999865321 111 1110 11222334445567888776532
Q ss_pred -------CeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 288 -------GLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 288 -------~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
...+++++++.+ .++ ...+.++... .++..++|+...+|..+ .....+..+|..+++
T Consensus 302 ~~~~hk~~~~~V~viD~~t--~kv-----~~~i~vg~~~---~~lavs~D~~~~ly~tn--~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 302 DEWRHKTASRFVVVLDAKT--GER-----LAKFEMGHEI---DSINVSQDEKPLLYALS--TGDKTLYIHDAESGE 365 (386)
T ss_dssp CTTCTTSCEEEEEEEETTT--CCE-----EEEEEEEEEE---CEEEECSSSSCEEEEEE--TTTTEEEEEETTTCC
T ss_pred cccccCCCCCEEEEEECCC--CeE-----EEEEECCCCc---ceEEECCCCCeEEEEEc--CCCCeEEEEECCCCc
Confidence 246899999874 322 1344443322 23455677764445443 235679999999998
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.7e-05 Score=79.10 Aligned_cols=192 Identities=9% Similarity=0.074 Sum_probs=114.3
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc-cCc---------------cceeEEecCCeEEEEE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGV---------------TASVEWAGNEALVYIT 143 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~---------------~~~~~WspDg~l~y~~ 143 (648)
..+..+.|+|||++|+.... +| .|+++|+.+++.... .. ... ...+.|+|++.++...
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (425)
T 1r5m_A 150 APIVSVKWNKDGTHIISMDV-EN----VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG 224 (425)
T ss_dssp SCEEEEEECTTSSEEEEEET-TC----CEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEEC
T ss_pred ccEEEEEECCCCCEEEEEec-CC----eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEc
Confidence 35678899999999886653 34 689999998876532 11 111 4458999998655443
Q ss_pred eCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-
Q 006375 144 MDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV- 222 (648)
Q Consensus 144 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~- 222 (648)
. ...|+.+++.++. ....+... ......+.|+||+++|+..+. ...|+++|+.+++....+......+
T Consensus 225 ~-----~g~i~~~d~~~~~--~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~ 293 (425)
T 1r5m_A 225 P-----KGAIFVYQITEKT--PTGKLIGH-HGPISVLEFNDTNKLLLSASD---DGTLRIWHGGNGNSQNCFYGHSQSIV 293 (425)
T ss_dssp G-----GGCEEEEETTCSS--CSEEECCC-SSCEEEEEEETTTTEEEEEET---TSCEEEECSSSBSCSEEECCCSSCEE
T ss_pred C-----CCeEEEEEcCCCc--eeeeeccC-CCceEEEEECCCCCEEEEEcC---CCEEEEEECCCCccceEecCCCccEE
Confidence 3 3458899998763 33333332 233456789999998876543 3468889988776233333222222
Q ss_pred eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcC
Q 006375 223 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 223 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~ 298 (648)
...|+|++ .|+..+.. ..|...|+........+..+.. .+..+.+..+ .+++....++ .+.+|++.
T Consensus 294 ~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg--~i~i~~~~ 360 (425)
T 1r5m_A 294 SASWVGDD-KVISCSMD-----GSVRLWSLKQNTLLALSIVDGV--PIFAGRISQDGQKYAVAFMDG--QVNVYDLK 360 (425)
T ss_dssp EEEEETTT-EEEEEETT-----SEEEEEETTTTEEEEEEECTTC--CEEEEEECTTSSEEEEEETTS--CEEEEECH
T ss_pred EEEECCCC-EEEEEeCC-----CcEEEEECCCCcEeEecccCCc--cEEEEEEcCCCCEEEEEECCC--eEEEEECC
Confidence 34589988 44444332 4788888876332221222222 3556666543 2333344443 57777876
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-05 Score=82.47 Aligned_cols=156 Identities=10% Similarity=0.105 Sum_probs=93.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc---cCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL---VGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~---~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
.+..+.|||||++||...+ + .+.+++..+++.... .. ......++|+||| .++....+ ......++.+
T Consensus 178 ~V~~v~fspdg~~l~s~s~--~----~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d-~~~~~~i~~~ 250 (365)
T 4h5i_A 178 EVKDLHFSTDGKVVAYITG--S----SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLK-KGKGIVLTKI 250 (365)
T ss_dssp CCCEEEECTTSSEEEEECS--S----CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEES-SSCCEEEEEE
T ss_pred ceEEEEEccCCceEEeccc--e----eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecC-CcceeEEeec
Confidence 3668899999999998753 2 367778877775532 21 1224569999999 66555543 3333446666
Q ss_pred ECCCCCCCcEEEEe-ecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEe-eecccce-eeeEeecCCEE
Q 006375 157 KLEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL-TPRVVGV-DTAASHRGNHF 233 (648)
Q Consensus 157 ~l~~~~~~~~~~~~-~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l-~~~~~~~-~~~~s~dg~~l 233 (648)
++............ .........+++||||++|+..+.+ ..|.++|+.+++....+ ......+ ...|||||+.|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D---~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~l 327 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND---NSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYV 327 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT---SCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC---CEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEE
Confidence 66554211111111 1122334567899999998865543 45899999887622222 2223333 35699999977
Q ss_pred EEEeccCCCCCcEEEEEeC
Q 006375 234 FITRRSDELFNSELLACPV 252 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~ 252 (648)
+-.+.+ ..|.+.++
T Consensus 328 aS~S~D-----~tvrvw~i 341 (365)
T 4h5i_A 328 ASVSAA-----NTIHIIKL 341 (365)
T ss_dssp EEEETT-----SEEEEEEC
T ss_pred EEEeCC-----CeEEEEEc
Confidence 655543 24555555
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-06 Score=87.63 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=69.9
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHH-HHHHHHcCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC-AEYLIKNCYCT 483 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d 483 (648)
..|.|+++||..+.. ..|......| ..++.|+.+|.+|.+.. ... ..+++++.+. ++.+.... .
T Consensus 100 ~~~~l~~lhg~~~~~--~~~~~l~~~L-~~~~~v~~~d~~g~~~~---~~~-------~~~~~~~a~~~~~~i~~~~--~ 164 (329)
T 3tej_A 100 NGPTLFCFHPASGFA--WQFSVLSRYL-DPQWSIIGIQSPRPNGP---MQT-------AANLDEVCEAHLATLLEQQ--P 164 (329)
T ss_dssp SSCEEEEECCTTSCC--GGGGGGGGTS-CTTCEEEEECCCTTTSH---HHH-------CSSHHHHHHHHHHHHHHHC--S
T ss_pred CCCcEEEEeCCcccc--hHHHHHHHhc-CCCCeEEEeeCCCCCCC---CCC-------CCCHHHHHHHHHHHHHHhC--C
Confidence 457899999976543 3355444444 46899999999987542 111 1345555544 34444322 1
Q ss_pred CCeEEEEeeChhHHHHHHHHhh---CCCceeEEEecCCccc
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNM---RPDLFKAAVAAVPFVD 521 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~---~p~~~~a~v~~~~~~d 521 (648)
.+++.++|+||||.++..++.+ +|+.++.+|+..+...
T Consensus 165 ~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~ 205 (329)
T 3tej_A 165 HGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPP 205 (329)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCT
T ss_pred CCCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCC
Confidence 2589999999999999999998 9999999888776543
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-06 Score=75.93 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=56.8
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++| +... .|... | .++|.|+.+|+||.|...... . . ++++.+.+..+++. .+.+
T Consensus 22 ~~~vv~~H-~~~~----~~~~~---l-~~~~~v~~~d~~G~G~s~~~~--------~-~-~~~~~~~~~~~~~~--~~~~ 80 (131)
T 2dst_A 22 GPPVLLVA-EEAS----RWPEA---L-PEGYAFYLLDLPGYGRTEGPR--------M-A-PEELAHFVAGFAVM--MNLG 80 (131)
T ss_dssp SSEEEEES-SSGG----GCCSC---C-CTTSEEEEECCTTSTTCCCCC--------C-C-HHHHHHHHHHHHHH--TTCC
T ss_pred CCeEEEEc-CCHH----HHHHH---H-hCCcEEEEECCCCCCCCCCCC--------C-C-HHHHHHHHHHHHHH--cCCC
Confidence 47899999 2221 12322 3 456999999999987643211 0 1 56666666655554 2346
Q ss_pred eEEEEeeChhHHHHHHHHhhCCC
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPD 508 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~ 508 (648)
++.++|+|+||.++..++.++|.
T Consensus 81 ~~~lvG~S~Gg~~a~~~a~~~p~ 103 (131)
T 2dst_A 81 APWVLLRGLGLALGPHLEALGLR 103 (131)
T ss_dssp SCEEEECGGGGGGHHHHHHTTCC
T ss_pred ccEEEEEChHHHHHHHHHhcCCc
Confidence 89999999999999999999886
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.2e-05 Score=81.61 Aligned_cols=188 Identities=15% Similarity=0.124 Sum_probs=109.4
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-cc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.+||||++||.... +| .|.++|.. ++.+. .. -......++|+||| .|+....+ ..|..++.
T Consensus 346 ~v~~~~~s~~g~~l~~~~~-dg----~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d-----~~v~~~~~ 414 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASD-DK----TVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDD-----KTVKLWNR 414 (577)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----EEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETT-----SEEEEECT
T ss_pred CEEEEEECCCCCEEEEEeC-CC----EEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCC-----CEEEEEeC
Confidence 4567899999999987654 33 68888964 44332 11 12234569999999 66544322 34667775
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEeecCCEEEEEe
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITR 237 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~~ 237 (648)
... ....+... ......+.++||+++|+..+. +..|.++|+++.. ...+......+. ..|+|||+.|+..+
T Consensus 415 ~~~---~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~---d~~v~~w~~~~~~-~~~~~~~~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 415 NGQ---LLQTLTGH-SSSVWGVAFSPDDQTIASASD---DKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp TCC---EEEEEECC-SSCEEEEEECTTSSEEEEEET---TSEEEEEETTSCE-EEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred CCC---EEEEecCC-CCCeEEEEECCCCCEEEEEcC---CCEEEEEECCCCE-EEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 332 22233332 233446789999999876543 3468888876543 444444433333 46999999776555
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcC
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~ 298 (648)
.. ..|.+.+..+ ...+.+..+.. .+..+.+.++. +++....++ .+.+|+.+
T Consensus 487 ~d-----~~i~iw~~~~-~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~dg--~v~lwd~~ 538 (577)
T 2ymu_A 487 DD-----KTVKLWNRNG-QLLQTLTGHSS--SVRGVAFSPDGQTIASASDDK--TVKLWNRN 538 (577)
T ss_dssp TT-----SEEEEEETTS-CEEEEEECCSS--CEEEEEECTTSSCEEEEETTS--EEEEECTT
T ss_pred CC-----CEEEEEcCCC-CEEEEEeCCCC--CEEEEEEcCCCCEEEEEECcC--EEEEEeCC
Confidence 43 3566677643 22222333333 35566665542 334444554 57777765
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00013 Score=73.92 Aligned_cols=192 Identities=11% Similarity=0.033 Sum_probs=107.4
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++|+-.. .+| +|++||+.+++..... -......++|+||+ .|+ +... ...|.++++
T Consensus 78 ~V~~~~~~~~~~~l~s~s-~D~----~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~-s~~~----d~~i~~wd~ 147 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSS-WDK----TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGA----EREIKLWNI 147 (343)
T ss_dssp CEEEEEECSSTTEEEEEE-TTS----EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEE-EEET----TSCEEEEES
T ss_pred ceEEEEECCCCCEEEEEc-CCC----cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEE-EEcC----CCEEEEEec
Confidence 467789999999887443 334 7999999998865321 12234569999999 554 4432 234777777
Q ss_pred CCCCCCcEEEEee--cCCCeEEEEEeCCCC----------cEEEEEEccccccEEEEEECCCCCceeEeeecccce-eee
Q 006375 159 EADQSNDICLYHE--KDDIYSLGLQASESK----------KFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTA 225 (648)
Q Consensus 159 ~~~~~~~~~~~~~--~~~~~~~~~~~s~Dg----------~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~ 225 (648)
... ....... ........+.++|++ .+++..+. +..|.++|..... ...+......+ ...
T Consensus 148 ~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~-~~~~~~h~~~v~~~~ 220 (343)
T 2xzm_R 148 LGE---CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW---DGRLKVWNTNFQI-RYTFKAHESNVNHLS 220 (343)
T ss_dssp SSC---EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET---TSEEEEEETTTEE-EEEEECCSSCEEEEE
T ss_pred cCC---ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC---CCEEEEEcCCCce-eEEEcCccccceEEE
Confidence 532 1111111 112334467888887 45543322 3567888854322 22233332233 346
Q ss_pred EeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 226 ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 226 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
|+|+|+.|+..+.. ..|...|+.........+.... .+..+.+.++..++....++ .+.++++..
T Consensus 221 ~s~~g~~l~sgs~d-----g~v~iwd~~~~~~~~~~~~~~~--~v~~v~~sp~~~~la~~~d~--~v~iw~~~~ 285 (343)
T 2xzm_R 221 ISPNGKYIATGGKD-----KKLLIWDILNLTYPQREFDAGS--TINQIAFNPKLQWVAVGTDQ--GVKIFNLMT 285 (343)
T ss_dssp ECTTSSEEEEEETT-----CEEEEEESSCCSSCSEEEECSS--CEEEEEECSSSCEEEEEESS--CEEEEESSS
T ss_pred ECCCCCEEEEEcCC-----CeEEEEECCCCcccceeecCCC--cEEEEEECCCCCEEEEECCC--CEEEEEeCC
Confidence 99999977655443 4677778743222222332222 25566666553333333332 477888764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00031 Score=69.79 Aligned_cols=195 Identities=11% Similarity=0.055 Sum_probs=111.2
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+....|+|||++|+-... +| +|++||+.+++..... -.+....++|+||+.++++...+ ..|.++++.
T Consensus 57 ~v~~~~~~~~~~~l~s~s~-d~----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D----~~v~lWd~~ 127 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSD-DF----RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD----LTVKLWNWE 127 (304)
T ss_dssp CEEEEEEEGGGTEEEEEET-TS----EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT----SCEEEEEGG
T ss_pred cEEEEEEeCCCCEEEEECC-CC----EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCC----CeEEEEECC
Confidence 4567899999999887654 23 7999999999865421 12334569999999444555432 347788887
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCC-CCcEEEEEEccccccEEEEEECCCCCceeEeee-ccccee-eeEee--cCCEEE
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGVD-TAASH--RGNHFF 234 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~~~-~~~s~--dg~~l~ 234 (648)
++.. ....+..+ ......+.|+| |++.|+..+. +..|.++|+.++.....+.. ....+. ..+++ ++..|+
T Consensus 128 ~~~~-~~~~~~~h-~~~v~~v~~~p~~~~~l~sgs~---D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 128 NNWA-LEQTFEGH-EHFVMCVAFNPKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp GTTE-EEEEECCC-CSCEEEEEECTTCTTEEEEEET---TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred CCcc-hhhhhccc-CCcEEEEEECCCCCCEEEEEeC---CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence 6521 22233333 33455788999 5666654332 35688889877652222322 222222 23544 555554
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCC
Q 006375 235 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~ 299 (648)
..+.. ..|...|+.+......+..+... +..+.+.++ .+++....++ .+.+|++..
T Consensus 203 s~s~D-----~~i~iWd~~~~~~~~~~~~h~~~--v~~~~~~p~~~~l~s~s~Dg--~i~iWd~~~ 259 (304)
T 2ynn_A 203 TASDD-----LTIKIWDYQTKSCVATLEGHMSN--VSFAVFHPTLPIIISGSEDG--TLKIWNSST 259 (304)
T ss_dssp EEETT-----SEEEEEETTTTEEEEEEECCSSC--EEEEEECSSSSEEEEEETTS--CEEEEETTT
T ss_pred EEcCC-----CeEEEEeCCCCccceeeCCCCCC--EEEEEECCCCCEEEEEcCCC--eEEEEECCC
Confidence 44332 46778888763322223333332 444555544 2444555554 477778763
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=9.9e-05 Score=75.91 Aligned_cols=201 Identities=9% Similarity=-0.001 Sum_probs=114.2
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..+.|||||++|+.... +| .|+++|+.+....... -......++|+|++ .++++...+ ..|..+++.
T Consensus 165 ~v~~~~~~~~~~~l~~~~~-d~----~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~ 235 (383)
T 3ei3_B 165 WYCCVDVSVSRQMLATGDS-TG----RLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD----ATVKLWDLR 235 (383)
T ss_dssp CEEEEEEETTTTEEEEEET-TS----EEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETT----SEEEEEEGG
T ss_pred CeEEEEECCCCCEEEEECC-CC----CEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC----CEEEEEeCC
Confidence 4678899999999887653 33 7999999533322222 12334569999999 577776532 358888887
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCC-CCcEEEEEEccccccEEEEEECCCCCceeEeeecc-------cceeeeEeecCC
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-------VGVDTAASHRGN 231 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~-------~~~~~~~s~dg~ 231 (648)
+.......+...........+.|+| ||++|+..+. +..|+++|+.+++....+.... ......|+|++.
T Consensus 236 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 312 (383)
T 3ei3_B 236 NIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ---RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYD 312 (383)
T ss_dssp GCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES---SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSS
T ss_pred CCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC---CCcEEEEECCCCccccccccccccccccccceEEeccCCCC
Confidence 6432222222222334455789999 9999876543 3679999998876222222111 112234666666
Q ss_pred EEEEEeccC----CCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcC
Q 006375 232 HFFITRRSD----ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 232 ~l~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~ 298 (648)
.+.+....+ +..+..|.+.|+.+......+..+.....+..+.+.. ..++.. . + ..+.+|+++
T Consensus 313 ~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~-s-d--~~i~iw~~~ 381 (383)
T 3ei3_B 313 LIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG-M-G--FNILIWNRE 381 (383)
T ss_dssp EEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE-E-T--TEEEEEECC
T ss_pred ceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe-c-C--CcEEEEecC
Confidence 554433211 1234678888987633332232222122233335544 444333 2 4 467888876
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00038 Score=71.95 Aligned_cols=191 Identities=14% Similarity=0.084 Sum_probs=109.6
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
+..+.|||||++||.... +| .|++||+++++.+... -......++|+||+ .|+ +... ...|..+++.
T Consensus 126 v~~v~~s~dg~~l~s~~~-d~----~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~----d~~v~iwd~~ 195 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAE-DR----LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV-SGSG----DRTVRIWDLR 195 (393)
T ss_dssp EEEEEECTTSSEEEEEET-TS----CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEET----TSEEEEEETT
T ss_pred EEEEEECCCCCEEEEEcC-CC----eEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEE-EecC----CCcEEEEECC
Confidence 678999999999987653 33 7999999998765321 12224569999999 654 4432 2358888988
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCC-CCcEEEEEEccccccEEEEEECCCCCceeEee-------ecccce-eeeEeecC
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLT-------PRVVGV-DTAASHRG 230 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~-------~~~~~~-~~~~s~dg 230 (648)
++ +....+... .....+.++| ||++|+..+. +..|.++|+.++.....+. .....+ ...|+|+|
T Consensus 196 ~~--~~~~~~~~~--~~v~~~~~~~~~~~~l~~~s~---d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g 268 (393)
T 1erj_A 196 TG--QCSLTLSIE--DGVTTVAVSPGDGKYIAAGSL---DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268 (393)
T ss_dssp TT--EEEEEEECS--SCEEEEEECSTTCCEEEEEET---TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred CC--eeEEEEEcC--CCcEEEEEECCCCCEEEEEcC---CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC
Confidence 76 223333322 2344678898 8888876543 3458888998876122221 111112 24589999
Q ss_pred CEEEEEeccCCCCCcEEEEEeCCCCCc-----------cee-EecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEc
Q 006375 231 NHFFITRRSDELFNSELLACPVDNTSE-----------TTV-LIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRL 297 (648)
Q Consensus 231 ~~l~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~ 297 (648)
+.|+..+.. ..|...|+..... ... +..+.. .+..+.+..+ ..++....++ .+.+|++
T Consensus 269 ~~l~s~s~d-----~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs~D~--~v~iwd~ 339 (393)
T 1erj_A 269 QSVVSGSLD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYILSGSKDR--GVLFWDK 339 (393)
T ss_dssp SEEEEEETT-----SEEEEEEC---------------CEEEEEECCSS--CEEEEEECGGGCEEEEEETTS--EEEEEET
T ss_pred CEEEEEeCC-----CEEEEEECCCCCCcccccCCCCCcceEEEecccC--cEEEEEECCCCCEEEEEeCCC--eEEEEEC
Confidence 877654432 3566666653211 001 222222 2445555543 2334444444 5778887
Q ss_pred CC
Q 006375 298 PA 299 (648)
Q Consensus 298 ~~ 299 (648)
..
T Consensus 340 ~~ 341 (393)
T 1erj_A 340 KS 341 (393)
T ss_dssp TT
T ss_pred CC
Confidence 63
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.31 E-value=6.7e-05 Score=76.51 Aligned_cols=194 Identities=10% Similarity=0.055 Sum_probs=107.2
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCC--eeec-c-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT--PVGK-P-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~--~~~~-~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
+..+.|||||++||.... + ..|+++|+++++ .... . -......++|+||+ .|+....+ ..|..++
T Consensus 11 i~~~~~s~~~~~l~~~~~-d----~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd 80 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPN-N----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWT 80 (372)
T ss_dssp CCEEEECTTSSEEEEECS-S----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEE
T ss_pred eEEEEECCCCCEEEEEeC-C----CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-----CeEEEEE
Confidence 567899999999987643 2 379999999886 3221 1 12234569999999 55543322 3477777
Q ss_pred CCCCCCCcEEEEe-ecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCce---eEeeec-ccce-eeeEeecCC
Q 006375 158 LEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEEL---RVLTPR-VVGV-DTAASHRGN 231 (648)
Q Consensus 158 l~~~~~~~~~~~~-~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~---~~l~~~-~~~~-~~~~s~dg~ 231 (648)
+.++. ...... .........+.|+||+++|+..+.+ ..|+++|+.++... ..+... ...+ ...|+|+++
T Consensus 81 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (372)
T 1k8k_C 81 LKGRT--WKPTLVILRINRAARCVRWAPNEKKFAVGSGS---RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155 (372)
T ss_dssp EETTE--EEEEEECCCCSSCEEEEEECTTSSEEEEEETT---SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred CCCCe--eeeeEEeecCCCceeEEEECCCCCEEEEEeCC---CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC
Confidence 76552 122221 1122334578899999988865532 34666666555411 122111 1222 345899998
Q ss_pred EEEEEeccCCCCCcEEEEEeCCCC-----------------CcceeEecCCCCcccceEEEeCCE-EEEEEecCCeeEEE
Q 006375 232 HFFITRRSDELFNSELLACPVDNT-----------------SETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKIT 293 (648)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~ 293 (648)
.|+..+.. ..|...|+... +.....+.. ....+..+.+..+. .++....++ .+.
T Consensus 156 ~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~--~i~ 227 (372)
T 1k8k_C 156 LLAAGSCD-----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWVHGVCFSANGSRVAWVSHDS--TVC 227 (372)
T ss_dssp EEEEEETT-----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCEEEEEECSSSSEEEEEETTT--EEE
T ss_pred EEEEEcCC-----CCEEEEEcccccccccccccccccccchhhheEecCC-CCCeEEEEEECCCCCEEEEEeCCC--EEE
Confidence 77665543 35666664310 111112221 12235566665542 334444444 578
Q ss_pred EEEcCC
Q 006375 294 TYRLPA 299 (648)
Q Consensus 294 v~~~~~ 299 (648)
+|++..
T Consensus 228 i~d~~~ 233 (372)
T 1k8k_C 228 LADADK 233 (372)
T ss_dssp EEEGGG
T ss_pred EEECCC
Confidence 888873
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00011 Score=75.40 Aligned_cols=203 Identities=14% Similarity=0.066 Sum_probs=107.3
Q ss_pred eEEeCCCCCEEEEEEeC-----CCCeEEEEEEEECCCCCeeec-ccc--------CccceeEEecCC-eEEEEEeCCCCC
Q 006375 85 CFQVSPDNKLVAYAEDT-----KGDEIYTVYVIDIETGTPVGK-PLV--------GVTASVEWAGNE-ALVYITMDEILR 149 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~-----~G~e~~~l~v~dl~~g~~~~~-~~~--------~~~~~~~WspDg-~l~y~~~~~~~~ 149 (648)
++.+||||++|.++... .|.....|.++|+++.+.+.. ... ..-..+.|+||| ++|+.... .
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~---~ 146 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA---A 146 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC---C
Confidence 78999999998877532 122234788999998876532 122 112368999999 66554322 1
Q ss_pred CceEEEEECCCCCCCcEEEEeec-------CCCeEEEEEeCCCCcEEEEEEccc--------------------------
Q 006375 150 PDKAWLHKLEADQSNDICLYHEK-------DDIYSLGLQASESKKFLFIASESK-------------------------- 196 (648)
Q Consensus 150 ~~~l~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~s~Dg~~l~~~~~~~-------------------------- 196 (648)
...|..++ .++..... +...+ +... .-...++||+.+++.. ..
T Consensus 147 ~~~v~viD-~t~~~~~~-~i~~~~~~~~~~~~~~-~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 147 GPAVGLVV-QGGSSDDQ-LLSSPTCYHIHPGAPS-TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred CCeEEEEE-CCCCEEeE-EcCCCceEEEEeCCCc-eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence 34588888 76532111 01110 0000 0123445655544432 10
Q ss_pred ---------cccEEEEEECCCCCceeEeee-------------cccce-eeeEeecCCEEEEEeccCC-----CCCcEEE
Q 006375 197 ---------ITRFVFYLDVSKPEELRVLTP-------------RVVGV-DTAASHRGNHFFITRRSDE-----LFNSELL 248 (648)
Q Consensus 197 ---------~~~~l~~~dl~~~~~~~~l~~-------------~~~~~-~~~~s~dg~~l~~~~~~~~-----~~~~~l~ 248 (648)
....++++|+.+.. .+.+.. ...+. ...+++||+.+|+..+... .....|.
T Consensus 223 ~~~~~~~~~~~~~v~vid~~~~~-~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~ 301 (373)
T 2mad_H 223 KSGRIVWPVYSGKILQADISAAG-ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT 301 (373)
T ss_pred cCCEEEEEcCCceEEEEeccCCc-ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence 12357777776553 221111 01111 1357899999888765311 1235799
Q ss_pred EEeCCCCCcceeEecCCCCcccceEEEeCC--EEEEEEecCCeeEEEEEEcCC
Q 006375 249 ACPVDNTSETTVLIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~~~ 299 (648)
++|.++..... .++-.. ...++.++.| .+++.. +.+...+.+++..+
T Consensus 302 VID~~t~~vv~-~i~~g~--~p~~i~~s~Dg~~~l~v~-~~~~~~V~ViD~~t 350 (373)
T 2mad_H 302 SVTGLVGQTSS-QISLGH--DVDAISVAQDGGPDLYAL-SAGTEVLHIYDAGA 350 (373)
T ss_pred EEECCCCEEEE-EEECCC--CcCeEEECCCCCeEEEEE-cCCCCeEEEEECCC
Confidence 99998633322 233332 2445555554 344443 33446899999874
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.31 E-value=5.3e-07 Score=90.94 Aligned_cols=103 Identities=14% Similarity=0.054 Sum_probs=62.1
Q ss_pred EEEEecC--CCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 408 LLLYGYG--SYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 408 ~vl~~hG--g~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|+++|| +.+. ...|......| ..++.|+.+|.||.|....+.. .....+++++.+.+..++... ....
T Consensus 91 ~l~~~hg~g~~~~--~~~~~~l~~~L-~~~~~v~~~d~~G~g~~~~~~~-----~~~~~~~~~~a~~~~~~i~~~-~~~~ 161 (319)
T 2hfk_A 91 VLVGCTGTAANGG--PHEFLRLSTSF-QEERDFLAVPLPGYGTGTGTGT-----ALLPADLDTALDAQARAILRA-AGDA 161 (319)
T ss_dssp EEEEECCCCTTCS--TTTTHHHHHTT-TTTCCEEEECCTTCCBC---CB-----CCEESSHHHHHHHHHHHHHHH-HTTS
T ss_pred cEEEeCCCCCCCc--HHHHHHHHHhc-CCCCceEEecCCCCCCCccccc-----CCCCCCHHHHHHHHHHHHHHh-cCCC
Confidence 7999997 2332 23355444444 3689999999998775310000 011134444443332222211 1236
Q ss_pred eEEEEeeChhHHHHHHHHhhC----CCceeEEEecCCc
Q 006375 486 KLCIEGRSAGGLLIGAVLNMR----PDLFKAAVAAVPF 519 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~----p~~~~a~v~~~~~ 519 (648)
++.++|+|+||.++..++.+. ++.++.+|+..+.
T Consensus 162 p~~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~ 199 (319)
T 2hfk_A 162 PVVLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPY 199 (319)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCC
T ss_pred CEEEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCC
Confidence 799999999999999988875 4558888877654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-05 Score=84.43 Aligned_cols=225 Identities=13% Similarity=0.015 Sum_probs=119.4
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
+.++.|||||++||=+.+ ..+|. |.+.++.+..... ....++++||| .+. .. ++.+++
T Consensus 18 v~sv~~SpDG~~iASas~-----D~TV~--d~~~~~~l~gh~~-~v~~V~FsPdg------~~~---~~-----~~~~~~ 75 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFP-----DISIG--QPKYAKDINCNSK-NLFHVKEFPLE------FEN---KL-----DFELAQ 75 (588)
T ss_dssp SCCEEECTTSCEEEECSS-----SEEEE--EECCCSCCSSBGG-GTEEEEEECCC------CCC---TT-----TTSCCC
T ss_pred EEEEEECCCCCEEEEEcC-----Cceee--cccccceecCCCc-cEEEEEECCCC------Ccc---eE-----EEEeCC
Confidence 347799999999985432 34555 7666654421112 23459999999 111 11 112211
Q ss_pred CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc------ceeeeEeecCCEEEEE
Q 006375 163 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV------GVDTAASHRGNHFFIT 236 (648)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~------~~~~~~s~dg~~l~~~ 236 (648)
... ++.-....+...++|||||++|+..+.+ ..+.++|.++ . +..+. ... -....|||||+.|+..
T Consensus 76 ~~~--~~~~~~~~~V~~vawSPdG~~LAs~s~d---g~V~iwd~~~-~-l~~l~-~~~~~~~~sv~svafSPDG~~LAsg 147 (588)
T 2j04_A 76 QNG--LLNSQPVCYPRVCKPSPIDDWMAVLSNN---GNVSVFKDNK-M-LTNLD-SKGNLSSRTYHCFEWNPIESSIVVG 147 (588)
T ss_dssp SSC--SSTTSCSCCEEEEEECSSSSCEEEEETT---SCEEEEETTE-E-EEECC-CSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred Cce--EeecCCCCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCc-e-eeecc-CCCccccccEEEEEEcCCCCEEEEE
Confidence 111 1110113456688999999999876654 3477777433 1 22222 211 1235699999988877
Q ss_pred eccCCCCCcEEEEEeCCCCCc--c---e-eEec---CCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCccccc
Q 006375 237 RRSDELFNSELLACPVDNTSE--T---T-VLIP---HRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSL 307 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~--~---~-~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l 307 (648)
+.. ..|...++.+... . . ..+. .+....+..++|.+++ ++....+ ..+++|+++. +....
T Consensus 148 s~D-----GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D--~tVrlWd~~~--~~~~~- 216 (588)
T 2j04_A 148 NED-----GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSN--NSVFSMTVSA--SSHQP- 216 (588)
T ss_dssp ETT-----SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETT--CCEEEECCCS--SSSCC-
T ss_pred cCC-----CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCC--CeEEEEECCC--Ccccc-
Confidence 664 3566677765321 1 1 1221 1122357788888888 5555444 3577778773 32100
Q ss_pred CCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 308 QGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 308 ~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
..+.+. +.+...|..+.+. ++.+ ++. + ..++..+|..+++.
T Consensus 217 -~~~tL~-~~h~~~V~svaFs--g~~L-ASa-~---~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 217 -VSRMIQ-NASRRKITDLKIV--DYKV-VLT-C---PGYVHKIDLKNYSI 257 (588)
T ss_dssp -CEEEEE-CCCSSCCCCEEEE--TTEE-EEE-C---SSEEEEEETTTTEE
T ss_pred -ceeeec-ccccCcEEEEEEE--CCEE-EEE-e---CCeEEEEECCCCeE
Confidence 001111 1111234434443 3433 333 2 27899999988875
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00021 Score=77.95 Aligned_cols=232 Identities=14% Similarity=0.075 Sum_probs=129.2
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc-cCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..+.+||||++|+.... +| .|.+||+.+........ ......++|+||| .|+.... ...+..++..
T Consensus 305 ~v~~~~~~~~~~~l~t~~~-d~----~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----dg~v~~~~~~ 374 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASD-DK----TVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASD-----DKTVKLWNRN 374 (577)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----CEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETT
T ss_pred CeEEEEECCCCCEEEEEeC-CC----eEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeC-----CCEEEEEcCC
Confidence 4567889999999987653 33 68889987765443222 2234458999999 6654332 1246666653
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEEec
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRR 238 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~~ 238 (648)
.. ....+... ......+.++|||++|+..+. ...|+++|..+.. ...+......+ ...++||++.|+..+.
T Consensus 375 ~~---~~~~~~~~-~~~v~~~~~s~dg~~l~~~~~---d~~v~~~~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 446 (577)
T 2ymu_A 375 GQ---LLQTLTGH-SSSVRGVAFSPDGQTIASASD---DKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDDQTIASASD 446 (577)
T ss_dssp CC---EEEEEECC-SSCEEEEEECTTSSCEEEEET---TSEEEEECTTCCE-EEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CC---EEEEecCC-CCCeEEEEECCCCCEEEEEeC---CCEEEEEeCCCCE-EEEecCCCCCeEEEEECCCCCEEEEEcC
Confidence 32 22233322 233446789999999876543 3568888865443 44444333333 2458999998766554
Q ss_pred cCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCC
Q 006375 239 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID 317 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~ 317 (648)
. ..|...+..+ .....+..+.. .+..+.+.++ .+++....++ .+.+|+.+ +..+. . +..
T Consensus 447 d-----~~v~~w~~~~-~~~~~~~~~~~--~v~~~~~spd~~~las~~~d~--~i~iw~~~--~~~~~------~--~~~ 506 (577)
T 2ymu_A 447 D-----KTVKLWNRNG-QLLQTLTGHSS--SVRGVAFSPDGQTIASASDDK--TVKLWNRN--GQLLQ------T--LTG 506 (577)
T ss_dssp T-----SEEEEEETTS-CEEEEEECCSS--CEEEEEECTTSCEEEEEETTS--EEEEEETT--SCEEE------E--EEC
T ss_pred C-----CEEEEEECCC-CEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCC--EEEEEcCC--CCEEE------E--EeC
Confidence 3 3566677654 22222443433 3555666554 2333444444 57777865 43221 1 112
Q ss_pred CeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 318 PVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 318 ~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
....|..+.+++++..| ++.+ .-..+..+|. +++
T Consensus 507 h~~~v~~l~~s~dg~~l-~s~~---~dg~v~lwd~-~~~ 540 (577)
T 2ymu_A 507 HSSSVRGVAFSPDGQTI-ASAS---DDKTVKLWNR-NGQ 540 (577)
T ss_dssp CSSCEEEEEECTTSSCE-EEEE---TTSEEEEECT-TSC
T ss_pred CCCCEEEEEEcCCCCEE-EEEE---CcCEEEEEeC-CCC
Confidence 11234445556677644 3332 2356788886 444
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00012 Score=75.60 Aligned_cols=198 Identities=12% Similarity=0.095 Sum_probs=118.3
Q ss_pred EEEeeEEeC----CCCCE-EEEEEeCCCCeEEEEEEEECCC------CCeee-----cc---------ccCccceeEEec
Q 006375 81 YSVGCFQVS----PDNKL-VAYAEDTKGDEIYTVYVIDIET------GTPVG-----KP---------LVGVTASVEWAG 135 (648)
Q Consensus 81 ~~~~~~~~S----PDG~~-la~~~~~~G~e~~~l~v~dl~~------g~~~~-----~~---------~~~~~~~~~Wsp 135 (648)
..+..+.|+ |||++ |+... .+| .|+++|+.+ ++... .. -......++|+|
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 196 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATD-VKG----TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE 196 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEE-TTS----CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT
T ss_pred CcEEEEEEeeccCCCCceEEEEEe-CCC----cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC
Confidence 457788999 99999 66554 344 688888887 44332 11 122345699999
Q ss_pred CCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEee---c--CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 136 NEALVYITMDEILRPDKAWLHKLEADQSNDICLYHE---K--DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 136 Dg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~--~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
|+ ++++... ...|+.+++.++ +....+.. . .......+.|+||+++|+..+.+.....|+++|+.+++
T Consensus 197 ~~-~l~~~~~----dg~i~i~d~~~~--~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 197 RG-LIATGFN----NGTVQISELSTL--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 269 (397)
T ss_dssp TS-EEEEECT----TSEEEEEETTTT--EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred Cc-eEEEEeC----CCcEEEEECCCC--ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc
Confidence 99 6665542 345888998775 23333333 1 02334578899999998876544333689999998876
Q ss_pred ceeEeee-------------cccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEec------CC-----
Q 006375 211 ELRVLTP-------------RVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIP------HR----- 265 (648)
Q Consensus 211 ~~~~l~~-------------~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~----- 265 (648)
....+.. ....+ ...|+|+|+.|+..+.. ..|.+.|+....... .+. ..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~ 343 (397)
T 1sq9_A 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-----GKLRFWDVKTKERIT-TLNMHCDDIEIEEDIL 343 (397)
T ss_dssp EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTTEEEE-EEECCGGGCSSGGGCC
T ss_pred ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCceeE-EEecccCcccchhhhh
Confidence 2233322 22222 34599999977665543 478888887633222 332 11
Q ss_pred ---------CCcccceEEEeCC-----------EEEEEEecCCeeEEEEEEcC
Q 006375 266 ---------ESVKLQDIQLFID-----------HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 266 ---------~~~~~~~~~~~~~-----------~l~~~~~~~~~~~l~v~~~~ 298 (648)
....+..+.+.++ .+++....++ .+.+|+++
T Consensus 344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg--~i~iw~~~ 394 (397)
T 1sq9_A 344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR--SIRWFREA 394 (397)
T ss_dssp CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT--EEEEEEEE
T ss_pred ccccccccccCCceeEEEeccccccccccccccceEEEecCCC--cEEEEEcC
Confidence 0234667777776 3666666665 46666765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00032 Score=71.71 Aligned_cols=241 Identities=9% Similarity=0.016 Sum_probs=120.4
Q ss_pred eEEeCCCCCEEEEEEe-----CCCCeEEEEEEEECCCCCeeec-ccc-------CccceeEEecCCeEEEEEeCCCCCCc
Q 006375 85 CFQVSPDNKLVAYAED-----TKGDEIYTVYVIDIETGTPVGK-PLV-------GVTASVEWAGNEALVYITMDEILRPD 151 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~-----~~G~e~~~l~v~dl~~g~~~~~-~~~-------~~~~~~~WspDg~l~y~~~~~~~~~~ 151 (648)
.+.+||||++|..+.. ..|.....|.++|+++++.... ... .....++++|||+.+|+... ....
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~--~~~~ 131 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNA--SPAT 131 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEE--SSSE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECC--CCCC
Confidence 7899999999876653 1344456799999999886532 111 12345999999944454421 1134
Q ss_pred eEEEEECCCCCCCcEEEEe-ecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCC-CCcee-------Eeeecccce
Q 006375 152 KAWLHKLEADQSNDICLYH-EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK-PEELR-------VLTPRVVGV 222 (648)
Q Consensus 152 ~l~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~-~~~~~-------~l~~~~~~~ 222 (648)
.|..+++.+. +.+.. -.-+.. ..+...|+++..++..... . .+..++++. ++ .. .+.......
T Consensus 132 ~v~v~d~~~~----~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~d-g-~~~~v~~~~~g~-~~~~~~~~~~~~~~~~~~ 203 (361)
T 2oiz_A 132 SIGIVDVAKG----DYVEDVTAAAGC-WSVIPQPNRPRSFMTICGD-G-GLLTINLGEDGK-VASQSRSKQMFSVKDDPI 203 (361)
T ss_dssp EEEEEETTTT----EEEEEEGGGTTE-EEEEECTTSSSEEEEEETT-S-SEEEEEECTTSS-EEEEEECCCCSCTTTSCB
T ss_pred eEEEEECCCC----cEEEEEecCCCc-ceeEEcCCCCeeEEEECCC-C-cEEEEEECCCCc-EeeeccccceEcCCCCce
Confidence 5888888765 22222 111111 1123344442222221111 1 122223222 22 11 000111111
Q ss_pred eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcc---eeEecC---------CCCcccceEEEeCCEEEEEEecC---
Q 006375 223 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSET---TVLIPH---------RESVKLQDIQLFIDHLAVYEREG--- 287 (648)
Q Consensus 223 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~--- 287 (648)
....+++|+.+++.+.. .+++.+|+...... .+-+.. ........++.+++++++....+
T Consensus 204 ~~~~~~~g~~~~~~~~~-----~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~ 278 (361)
T 2oiz_A 204 FIAPALDKDKAHFVSYY-----GNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE 278 (361)
T ss_dssp CSCCEECSSEEEEEBTT-----SEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred EEEecccCCEEEEEeCC-----CeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence 12357888888877642 36888888642211 110000 00111123445556777665412
Q ss_pred -----CeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 288 -----GLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 288 -----~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
....++++++.+ ++.+ ..+.... ..++..+++++.++ ..+ . ..+..+|+++++
T Consensus 279 ~~~~~~~~~v~viD~~t-~~~v------~~i~~~~----p~~ia~spdg~~l~-v~n-~---~~v~v~D~~t~~ 336 (361)
T 2oiz_A 279 GTHKFPAAEIWVMDTKT-KQRV------ARIPGRD----ALSMTIDQQRNLML-TLD-G---GNVNVYDISQPE 336 (361)
T ss_dssp TCTTCCCSEEEEEETTT-TEEE------EEEECTT----CCEEEEETTTTEEE-EEC-S---SCEEEEECSSSS
T ss_pred ccccCCCceEEEEECCC-CcEE------EEEecCC----eeEEEECCCCCEEE-EeC-C---CeEEEEECCCCc
Confidence 234789998874 2222 2233322 22345667888544 333 2 889999999994
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00017 Score=74.82 Aligned_cols=119 Identities=15% Similarity=-0.006 Sum_probs=71.8
Q ss_pred CCCCCEEEEEEeCCCCeE-EEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCC-----CCCCceEEEEECCC
Q 006375 89 SPDNKLVAYAEDTKGDEI-YTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDE-----ILRPDKAWLHKLEA 160 (648)
Q Consensus 89 SPDG~~la~~~~~~G~e~-~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~-----~~~~~~l~~~~l~~ 160 (648)
.||+++ +|..+...... ..|.++|+++++.+.. .....- ++++|||| ++|...... ......|..+|..+
T Consensus 81 ~~~~~~-vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 81 APDARR-VYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCTTE-EEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCE-EEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 588887 45555432111 6899999999987743 222223 79999999 666554210 01234588888887
Q ss_pred CCCCcEEEEe-ecC---CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 161 DQSNDICLYH-EKD---DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 161 ~~~~~~~~~~-~~~---~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
.......... ... ...-..+.+||||+++++.. ....+.|.++|+.+.+
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n-~~~~~~VsVID~~t~k 211 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQ-FSPAPAVGVVDLEGKT 211 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEE-CSSSCEEEEEETTTTE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEe-cCCCCeEEEEECCCCe
Confidence 6322222221 000 00112457899999998753 3335789999999876
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00024 Score=71.14 Aligned_cols=191 Identities=9% Similarity=0.087 Sum_probs=105.8
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+....|||||++|+-... +| +|++||+.+++..... -......++|+|++.++++...+ ..|..+++.
T Consensus 67 ~v~~~~~s~dg~~l~s~s~-D~----~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D----~~i~vwd~~ 137 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASW-DK----TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD----KTIKVWTIK 137 (319)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETT----SCEEEEETT
T ss_pred cEEEEEECCCCCEEEEEeC-CC----EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEECC
Confidence 4567899999999876543 33 7999999999865421 12234569999999544555432 236677775
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCc------EEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCE
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKK------FLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNH 232 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~------~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~ 232 (648)
.. ....+... ......+.++|+++ .|+..+ .+..|.++|+.+.+....+......+ ...++|+|+.
T Consensus 138 ~~---~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 138 GQ---CLATLLGH-NDWVSQVRVVPNEKADDDSVTIISAG---NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210 (319)
T ss_dssp SC---EEEEECCC-SSCEEEEEECCC------CCEEEEEE---TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSE
T ss_pred CC---eEEEEecc-CCcEEEEEEccCCCCCCCccEEEEEe---CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCE
Confidence 43 22222222 23344567777543 444322 23568888988765112222222222 3458999997
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 233 FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
|+..+.. ..|.+.|+...... ..+.... .+..+.+.++..++....+. .+.+++++
T Consensus 211 l~s~~~d-----g~i~iwd~~~~~~~-~~~~~~~--~v~~~~~sp~~~~la~~~~~--~i~v~~~~ 266 (319)
T 3frx_A 211 IASAGKD-----GEIMLWNLAAKKAM-YTLSAQD--EVFSLAFSPNRYWLAAATAT--GIKVFSLD 266 (319)
T ss_dssp EEEEETT-----CEEEEEETTTTEEE-EEEECCS--CEEEEEECSSSSEEEEEETT--EEEEEEET
T ss_pred EEEEeCC-----CeEEEEECCCCcEE-EEecCCC--cEEEEEEcCCCCEEEEEcCC--CcEEEEeC
Confidence 6655443 46888888763222 2333332 34556665543222222222 35666665
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00021 Score=74.48 Aligned_cols=194 Identities=11% Similarity=0.061 Sum_probs=112.8
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..+.|||||++||-... +| +|++||+.+++.+... -......++|+|||.++++... ...|..+++.
T Consensus 152 ~V~~v~~~~~~~~l~sgs~-D~----~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~----D~~i~~wd~~ 222 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSA-DM----TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR----DKTIKMWEVQ 222 (410)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET----TSEEEEEETT
T ss_pred cEEEEEEcCCCCEEEEEeC-CC----eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECC
Confidence 4678899999998876543 34 6899999988765421 1223456999999943344432 2458888998
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEeec---------
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHR--------- 229 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~d--------- 229 (648)
++ .....+... ......+.+++||++|+..+. +..|.++|+.+++....+......+. ..|+|+
T Consensus 223 ~~--~~~~~~~~h-~~~v~~~~~~~~g~~l~s~s~---D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 296 (410)
T 1vyh_C 223 TG--YCVKTFTGH-REWVRMVRPNQDGTLIASCSN---DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA 296 (410)
T ss_dssp TC--CEEEEEECC-SSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred CC--cEEEEEeCC-CccEEEEEECCCCCEEEEEcC---CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhh
Confidence 76 233344433 334456789999998875443 34588889887761222222222222 346665
Q ss_pred -----------CCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEc
Q 006375 230 -----------GNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRL 297 (648)
Q Consensus 230 -----------g~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~ 297 (648)
|..|+..+. +..|...|+.+......+..+.. .+..+.+..+ ..++....++ .+.+|++
T Consensus 297 ~~~~~~~~~~~g~~l~sgs~-----D~~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~--~i~vwd~ 367 (410)
T 1vyh_C 297 TGSETKKSGKPGPFLLSGSR-----DKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDK--TLRVWDY 367 (410)
T ss_dssp CSCC-------CCEEEEEET-----TSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTT--EEEEECC
T ss_pred ccccccccCCCCCEEEEEeC-----CCeEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCCC--eEEEEEC
Confidence 333433332 24678888876332222333332 3555565543 2334444444 5777787
Q ss_pred CC
Q 006375 298 PA 299 (648)
Q Consensus 298 ~~ 299 (648)
..
T Consensus 368 ~~ 369 (410)
T 1vyh_C 368 KN 369 (410)
T ss_dssp TT
T ss_pred CC
Confidence 63
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00019 Score=72.02 Aligned_cols=143 Identities=8% Similarity=0.016 Sum_probs=66.3
Q ss_pred cEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC
Q 006375 199 RFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI 277 (648)
Q Consensus 199 ~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (648)
..|.++|+.+++....+......+ ...|+|+|+.|+..+.. ..|...|+....... .+.... .+..+.+.+
T Consensus 195 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D-----g~i~iwd~~~~~~~~-~~~~~~--~v~~~~~~~ 266 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD-----GQAMLWDLNEGKHLY-TLDGGD--IINALCFSP 266 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTEEEE-EEECSS--CEEEEEECS
T ss_pred CEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEeccCceee-eecCCc--eEEeeecCC
Confidence 346777777665122222222222 24588999876654442 467778887632222 333322 345556655
Q ss_pred CEEEEEEecCCeeEEEEEEcCCCCCcccccCCCc-eeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 278 DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGK-SVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 278 ~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~-~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+..++....++ .+.++++... ..+..+.... ..........|..+.+++++..| ++.+.. ..++.+|+++|+
T Consensus 267 ~~~~~~~~~d~--~i~iwd~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D---g~v~iW~~~tGt 339 (340)
T 4aow_A 267 NRYWLCAATGP--SIKIWDLEGK-IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL-FAGYTD---NLVRVWQVTIGT 339 (340)
T ss_dssp SSSEEEEEETT--EEEEEETTTT-EEEEEECCC-------CCCCCEEEEEECTTSSEE-EEEETT---SCEEEEEEEC--
T ss_pred CCceeeccCCC--EEEEEECCCC-eEEEeccccceeeeccCCCCCEEEEEECCCCCEE-EEEeCC---CEEEEEeCCCcC
Confidence 54444444444 5777887631 1111111000 00000111123334556676643 333322 457778877775
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00015 Score=73.30 Aligned_cols=197 Identities=9% Similarity=0.094 Sum_probs=109.7
Q ss_pred EEeeEEeCCC---CCEEEEEEeCCCCeEEEEEEEECCCCC-eeec-c-ccCcccee------EEecCCeEEEEEeCCCCC
Q 006375 82 SVGCFQVSPD---NKLVAYAEDTKGDEIYTVYVIDIETGT-PVGK-P-LVGVTASV------EWAGNEALVYITMDEILR 149 (648)
Q Consensus 82 ~~~~~~~SPD---G~~la~~~~~~G~e~~~l~v~dl~~g~-~~~~-~-~~~~~~~~------~WspDg~l~y~~~~~~~~ 149 (648)
.+..+.|+|+ |++|+.... +| .|+++|+.+++ .... . -......+ +|+||+.++++...
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~---- 137 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDF-GG----NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR---- 137 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEET-TS----CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET----
T ss_pred cEEEEEEcCCCCCCceEEEecC-CC----eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC----
Confidence 4678899999 688776643 34 69999999887 3321 1 12222335 45788844444432
Q ss_pred CceEEEEECCCCCCCcEEEEeecCC---CeEEEEE----eCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce
Q 006375 150 PDKAWLHKLEADQSNDICLYHEKDD---IYSLGLQ----ASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV 222 (648)
Q Consensus 150 ~~~l~~~~l~~~~~~~~~~~~~~~~---~~~~~~~----~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~ 222 (648)
...|..+++.++.. ....+..... .....+. +++++++++..+. ...|+++|+.+++ ..........+
T Consensus 138 d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~-~~~~~~~~~~v 212 (357)
T 3i2n_A 138 DGTVKVWDPRQKDD-PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD---NGDIKLFDLRNMA-LRWETNIKNGV 212 (357)
T ss_dssp TSCEEEECTTSCSS-CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET---TSEEEEEETTTTE-EEEEEECSSCE
T ss_pred CCeEEEEeCCCCCC-cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc---CCeEEEEECccCc-eeeecCCCCce
Confidence 23488888887632 2333322111 1222333 7899998886543 3579999998876 43333322222
Q ss_pred -eeeEee---cCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEe---cCCCCcccceEEEeCCE--EEEEEecCCeeEEE
Q 006375 223 -DTAASH---RGNHFFITRRSDELFNSELLACPVDNTSETTVLI---PHRESVKLQDIQLFIDH--LAVYEREGGLQKIT 293 (648)
Q Consensus 223 -~~~~s~---dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~l~ 293 (648)
...|+| +++.|+..+.. ..|...|+........+. .......+..+.+.++. +++....++ .+.
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~ 285 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLE-----GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG--GLH 285 (357)
T ss_dssp EEEEESCSSSSCCEEEEEEST-----TEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS--EEE
T ss_pred EEEEcCCCCCCCCEEEEECCC-----CeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC--cEE
Confidence 345888 88877665543 356666665422111111 01122346667777754 455565665 566
Q ss_pred EEEcCC
Q 006375 294 TYRLPA 299 (648)
Q Consensus 294 v~~~~~ 299 (648)
+|++..
T Consensus 286 iwd~~~ 291 (357)
T 3i2n_A 286 LWKYEY 291 (357)
T ss_dssp EEEEEC
T ss_pred EeecCC
Confidence 677653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00024 Score=73.19 Aligned_cols=242 Identities=16% Similarity=0.101 Sum_probs=128.7
Q ss_pred EEEeeEEeCC-CCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC---eEEEEEeCCCCCCceEEE
Q 006375 81 YSVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE---ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 81 ~~~~~~~~SP-DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg---~l~y~~~~~~~~~~~l~~ 155 (648)
..+..+.|+| ++++|+.. ..+| .|+++|+.+++.... ........+.|+|++ .++++...+ ..|+.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~-~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~ 170 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSS-SFDK----TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG----PKVQL 170 (408)
T ss_dssp SCEEEEEECTTCTTCEEEE-ETTS----EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS----SSEEE
T ss_pred CcEEEEEEccCCCcEEEEE-eCCC----eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC----CeEEE
Confidence 3577889999 66666654 3344 799999999886643 233344568888854 355555432 35888
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEe---------------eecc
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVL---------------TPRV 219 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l---------------~~~~ 219 (648)
+++.++. ....+... ......+.|+|+++++++.... ...|+++|+.++. ....+ ....
T Consensus 171 ~d~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~ll~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (408)
T 4a11_B 171 CDLKSGS--CSHILQGH-RQEILAVSWSPRYDYILATASA--DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN 245 (408)
T ss_dssp EESSSSC--CCEEECCC-CSCEEEEEECSSCTTEEEEEET--TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCS
T ss_pred EeCCCcc--eeeeecCC-CCcEEEEEECCCCCcEEEEEcC--CCcEEEEECCCCCcccccccccccccceeecccccccc
Confidence 8988763 33344333 2334578899999976554433 3458888887654 12222 1111
Q ss_pred cce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecC----CCCcccceEEEeCCEEEEEEecCCeeEEEE
Q 006375 220 VGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPH----RESVKLQDIQLFIDHLAVYEREGGLQKITT 294 (648)
Q Consensus 220 ~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v 294 (648)
..+ ...|+|+|+.|+..+.. ..|...++............ ........+.......++....++ .+.+
T Consensus 246 ~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~v 318 (408)
T 4a11_B 246 GKVNGLCFTSDGLHLLTVGTD-----NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS--TIAV 318 (408)
T ss_dssp SCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT--EEEE
T ss_pred CceeEEEEcCCCCEEEEecCC-----CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC--EEEE
Confidence 112 24589999987766553 35777787653222111110 001001111112222233333333 6788
Q ss_pred EEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 295 YRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 295 ~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+++.. +..+ ..+......+..+.+++++..+ ++.+. -+.+..+++.+++
T Consensus 319 ~d~~~-~~~~--------~~~~~~~~~v~~~~~s~~~~~l-~s~~~---dg~i~iw~~~~~~ 367 (408)
T 4a11_B 319 YTVYS-GEQI--------TMLKGHYKTVDCCVFQSNFQEL-YSGSR---DCNILAWVPSLYE 367 (408)
T ss_dssp EETTT-CCEE--------EEECCCSSCEEEEEEETTTTEE-EEEET---TSCEEEEEECC--
T ss_pred EECcC-Ccce--------eeeccCCCeEEEEEEcCCCCEE-EEECC---CCeEEEEeCCCCC
Confidence 88874 2211 1121121234445556676643 33332 3568888888776
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.4e-05 Score=79.53 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=105.1
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccC------ccceeEEecCCeEEEEEeCCCCCCceE
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG------VTASVEWAGNEALVYITMDEILRPDKA 153 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~------~~~~~~WspDg~l~y~~~~~~~~~~~l 153 (648)
-.+...+|||||++||-... +| ++.+||.++ .+.. . .. ....++|||||.++++... ...|
T Consensus 86 ~~V~~vawSPdG~~LAs~s~-dg----~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~----DGtV 153 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSN-NG----NVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE----DGEL 153 (588)
T ss_dssp CCEEEEEECSSSSCEEEEET-TS----CEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET----TSEE
T ss_pred CcEEEEEECCCCCEEEEEeC-CC----cEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC----CCEE
Confidence 35778999999999997664 34 588888644 2211 1 11 2446999999944444432 2358
Q ss_pred EEEECCCCCCCc-----EEEEe---ecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCc---eeEeee-ccc-
Q 006375 154 WLHKLEADQSND-----ICLYH---EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE---LRVLTP-RVV- 220 (648)
Q Consensus 154 ~~~~l~~~~~~~-----~~~~~---~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~---~~~l~~-~~~- 220 (648)
..+++.++.-.. ...+. .....+...++||||| ++..+. ++.++++|++++.. .+.+.+ ...
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~---D~tVrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS---NNSVFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET---TCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC---CCeEEEEECCCCccccceeeecccccCc
Confidence 888887752111 12221 1223567789999999 443332 46688889887761 123321 111
Q ss_pred ceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcc-eeEecCCCCcccceEEE--eCCE-EEEEEecCCeeEEEEE
Q 006375 221 GVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSET-TVLIPHRESVKLQDIQL--FIDH-LAVYEREGGLQKITTY 295 (648)
Q Consensus 221 ~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~-l~~~~~~~~~~~l~v~ 295 (648)
-....|+ |+.|+... . ..|...++.+ +.. .....+ ...+.++.+ .++. .++...++|. +++..
T Consensus 229 V~svaFs--g~~LASa~-~-----~tIkLWd~~~-~~~~~~~~gh--~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 229 ITDLKIV--DYKVVLTC-P-----GYVHKIDLKN-YSISSLKTGS--LENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp CCCEEEE--TTEEEEEC-S-----SEEEEEETTT-TEEEEEECSC--CSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred EEEEEEE--CCEEEEEe-C-----CeEEEEECCC-CeEEEEEcCC--CceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 1234466 56555443 1 3788888876 333 212232 233566677 6664 3444445666 56543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00076 Score=70.37 Aligned_cols=241 Identities=8% Similarity=0.018 Sum_probs=130.7
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
-.+..+.|||||++||.... +| .|.+||+++++.+.........-.+++.|+.++.+... ...++.++...
T Consensus 148 ~~V~sv~fspdg~~lasgs~-Dg----~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~----d~~i~~~d~~~ 218 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTS-SA----EVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSR----SGHIHHHDVRV 218 (420)
T ss_dssp CCEEEEEECTTSSEEEEEET-TS----CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEET----TSEEEEEETTS
T ss_pred CcEEEEEECCCCCEEEEEEC-CC----eEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeC----CCceeEeeecc
Confidence 35788999999999987654 33 69999999998764322111112334456644455432 23577777766
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-c---eeEeeecccce-eeeEeecCCEEEE
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-E---LRVLTPRVVGV-DTAASHRGNHFFI 235 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~---~~~l~~~~~~~-~~~~s~dg~~l~~ 235 (648)
.. .....+... ........++++|++++.... +..+.+++..+++ . ..........+ ...|+|++..++.
T Consensus 219 ~~-~~~~~~~~h-~~~~~~~~~~~~g~~l~s~~~---D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la 293 (420)
T 4gga_A 219 AE-HHVATLSGH-SQEVCGLRWAPDGRHLASGGN---DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 293 (420)
T ss_dssp SS-CEEEEEECC-SSCEEEEEECTTSSEEEEEET---TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred cc-eeeEEeccc-ccceeeeeecCCCCeeeeeec---cccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence 52 222333332 334456789999998875443 3457788887665 1 11222222222 2458888877766
Q ss_pred EeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEE--eCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCcee
Q 006375 236 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL--FIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 313 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i 313 (648)
+... ..+..|...|+.+..... .+..... +....+ .++.++.... .....|.+|++.. +..+ .
T Consensus 294 ~~~g--s~D~~I~iwd~~t~~~~~-~~~~~~~--v~~~~~~~~~~~lv~~sg-~~d~~I~iwd~~~-~~~v--------~ 358 (420)
T 4gga_A 294 TGGG--TSDRHIRIWNVCSGACLS-AVDAHSQ--VCSILWSPHYKELISGHG-FAQNQLVIWKYPT-MAKV--------A 358 (420)
T ss_dssp EEEC--TTTCEEEEEETTTTEEEE-EEECSSC--EEEEEEETTTTEEEEEEC-TTTCCEEEEETTT-CCEE--------E
T ss_pred EEee--cCCCEEEEEeCCccccce-eeccccc--eeeeeecCCCCeEEEEEe-cCCCEEEEEECCC-CcEE--------E
Confidence 5432 234578888887633222 3333322 334444 3455554432 1234688888874 2222 1
Q ss_pred ecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCC
Q 006375 314 EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDM 354 (648)
Q Consensus 314 ~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~ 354 (648)
.+..+...|..+.+++++..| ++.+.. ..+..+|+.+
T Consensus 359 ~l~gH~~~V~~l~~spdg~~l-~S~s~D---~tvriWdv~~ 395 (420)
T 4gga_A 359 ELKGHTSRVLSLTMSPDGATV-ASAAAD---ETLRLWRCFE 395 (420)
T ss_dssp EECCCSSCEEEEEECTTSSCE-EEEETT---TEEEEECCSC
T ss_pred EEcCCCCCEEEEEEcCCCCEE-EEEecC---CeEEEEECCC
Confidence 222222234445566777643 343322 4566666543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00015 Score=72.85 Aligned_cols=239 Identities=8% Similarity=0.061 Sum_probs=130.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCC----eeec-cccCccceeEEecCCe-EEEEEeCCCCCCceEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT----PVGK-PLVGVTASVEWAGNEA-LVYITMDEILRPDKAWL 155 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~----~~~~-~~~~~~~~~~WspDg~-l~y~~~~~~~~~~~l~~ 155 (648)
.+..+.|||||++|+.... +| .|++|++.+++ .... ........++|+||+. ++++...+ ..|+.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~-d~----~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~ 83 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSW-DG----SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ----GEILK 83 (342)
T ss_dssp CEEEEEEEGGGTEEEEEET-TS----EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT----SCEEE
T ss_pred cEEEEEEcCCCCEEEEEcC-CC----eEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCC----CeEEE
Confidence 4668899999999987653 33 78899988877 3222 1223345699999996 77766532 35888
Q ss_pred EEC-CCCCCCcEEEEeec-CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCC---------CCceeEeeecccc-ee
Q 006375 156 HKL-EADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK---------PEELRVLTPRVVG-VD 223 (648)
Q Consensus 156 ~~l-~~~~~~~~~~~~~~-~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~---------~~~~~~l~~~~~~-~~ 223 (648)
+++ .++. ...+... .......+.|+| ++.|+..+. ...|+++|+.+ ++....+. .... ..
T Consensus 84 wd~~~~~~---~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 155 (342)
T 1yfq_A 84 VDLIGSPS---FQALTNNEANLGICRICKYG-DDKLIAASW---DGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFT 155 (342)
T ss_dssp ECSSSSSS---EEECBSCCCCSCEEEEEEET-TTEEEEEET---TSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEE
T ss_pred EEeccCCc---eEeccccCCCCceEEEEeCC-CCEEEEEcC---CCeEEEEcccccccccccccCCeeeEEe-eCCceEE
Confidence 888 7652 2333320 223344678999 887775443 35688888765 43111121 1111 22
Q ss_pred eeEeecCCEEEEEeccCCCCCcEEEEEeCCC-CCcceeEecCCCCcccceEEEeC-C-EEEEEEecCCeeEEEEEEcCCC
Q 006375 224 TAASHRGNHFFITRRSDELFNSELLACPVDN-TSETTVLIPHRESVKLQDIQLFI-D-HLAVYEREGGLQKITTYRLPAV 300 (648)
Q Consensus 224 ~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~-~l~~~~~~~~~~~l~v~~~~~~ 300 (648)
..+++++ ++..+.. ..|..+++.. ...............+..+.+.+ + ..++....++ .+.+++++..
T Consensus 156 ~~~~~~~--l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--~i~i~~~~~~ 226 (342)
T 1yfq_A 156 MDTNSSR--LIVGMNN-----SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG--RVAVEFFDDQ 226 (342)
T ss_dssp EEECSSE--EEEEEST-----TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS--EEEEEECCTT
T ss_pred EEecCCc--EEEEeCC-----CeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC--cEEEEEEcCC
Confidence 3466655 4444332 4688888865 33222122222233456666664 3 3444444554 5666677653
Q ss_pred C-----CcccccCCCceeecCC-------CeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 301 G-----EPLKSLQGGKSVEFID-------PVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 301 g-----~~~~~l~~~~~i~~~~-------~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+ .... .+.... ....+..+.+++++..++ +.+ .-..++.+|+.+++
T Consensus 227 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~---~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 227 GDDYNSSKRF------AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY-TAG---SDGIISCWNLQTRK 284 (342)
T ss_dssp CCSTTCTTCE------EEECCCCCTTCCSSCCCEEEEEECTTTCCEE-EEE---TTSCEEEEETTTTE
T ss_pred Ccccccccce------eeecccccccccccceeEEEEEEcCCCCEEE-Eec---CCceEEEEcCccHh
Confidence 1 1111 111000 011233345556666443 332 23578999998887
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0004 Score=70.68 Aligned_cols=197 Identities=12% Similarity=0.117 Sum_probs=110.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCC--eeec-c-ccCccceeEEecC--CeEEEEEeCCCCCCceEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT--PVGK-P-LVGVTASVEWAGN--EALVYITMDEILRPDKAWL 155 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~--~~~~-~-~~~~~~~~~WspD--g~l~y~~~~~~~~~~~l~~ 155 (648)
.+..+.|||||++||.... +| .|++||+.++. .... . -.+....++|+++ +.++++...+ ..|..
T Consensus 13 ~v~~~~~s~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~v~i 83 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSS-DK----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD----GKVLI 83 (379)
T ss_dssp CEEEEEECSSSSEEEEEET-TS----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT----SCEEE
T ss_pred cEEEEEEcCCCCEEEEEEC-CC----cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC----CEEEE
Confidence 4678899999999987653 34 58888887433 2221 1 1223456999987 6555555432 34777
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCC--CcEEEEEEccccccEEEEEECCCCC--ceeEeeecccce-eeeEee--
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASES--KKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVGV-DTAASH-- 228 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~D--g~~l~~~~~~~~~~~l~~~dl~~~~--~~~~l~~~~~~~-~~~~s~-- 228 (648)
+++.++.......+... ......+.|+|+ +++|+..+. ...|.++|+.+.. ....+......+ ...|+|
T Consensus 84 wd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPLLLVASS---DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp EEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEET---TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred EEcCCCceeEeeeecCC-CcceEEEEeCCCCCCCEEEEecC---CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence 77776521122222222 234557889999 888876543 3568889988774 122222222222 345888
Q ss_pred -----------cCCEEEEEeccCCCCCcEEEEEeCCCCCcc-ee--EecCCCCcccceEEEeCC----EEEEEEecCCee
Q 006375 229 -----------RGNHFFITRRSDELFNSELLACPVDNTSET-TV--LIPHRESVKLQDIQLFID----HLAVYEREGGLQ 290 (648)
Q Consensus 229 -----------dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 290 (648)
++..|+..+.. ..|...|+...... .. .+... ...+..+.+.++ .+++....++
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~dg-- 231 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVSQDR-- 231 (379)
T ss_dssp ----------CTTCEEEEEETT-----SCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEETTS--
T ss_pred ccccccccCCCCCCEEEEEeCC-----CeEEEEEecCCCcceeeEEEEecc-cCcEeEEEECCCCCCCCeEEEEeCCC--
Confidence 57766655543 24666666442221 11 22211 223556666654 4555555555
Q ss_pred EEEEEEcCC
Q 006375 291 KITTYRLPA 299 (648)
Q Consensus 291 ~l~v~~~~~ 299 (648)
.+.+|++..
T Consensus 232 ~i~iwd~~~ 240 (379)
T 3jrp_A 232 TCIIWTQDN 240 (379)
T ss_dssp CEEEEEESS
T ss_pred EEEEEeCCC
Confidence 467778774
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0004 Score=70.33 Aligned_cols=248 Identities=8% Similarity=0.040 Sum_probs=134.9
Q ss_pred EEeeEEeCCC---CCEEEEEEeCCCCeEEEEEEEECCCCCeeec--c-----ccCccceeEEecC----CeEEEEEeCCC
Q 006375 82 SVGCFQVSPD---NKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--P-----LVGVTASVEWAGN----EALVYITMDEI 147 (648)
Q Consensus 82 ~~~~~~~SPD---G~~la~~~~~~G~e~~~l~v~dl~~g~~~~~--~-----~~~~~~~~~WspD----g~l~y~~~~~~ 147 (648)
.+..+.|||+ |..+.++....| .|.+||+.+++.+.. . .......++|+|| |.++++...+
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~----~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d- 94 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSN----RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR- 94 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETT----EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT-
T ss_pred ceEEEEEecccCCCCceEEEECCCC----EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC-
Confidence 5678899985 665555554334 689999987765421 1 1123456999999 5455555432
Q ss_pred CCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCC-CCcEEEEEEccccccEEEEEECCCCCceeEee----ecccce
Q 006375 148 LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLT----PRVVGV 222 (648)
Q Consensus 148 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~----~~~~~~ 222 (648)
..|..+++.++ +....+... ......+.|+| +++.|+..+. +..|+++|+.+++ ..... .....+
T Consensus 95 ---g~i~v~d~~~~--~~~~~~~~~-~~~i~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~-~~~~~~~~~~~~~~v 164 (366)
T 3k26_A 95 ---GIIRIINPITM--QCIKHYVGH-GNAINELKFHPRDPNLLLSVSK---DHALRLWNIQTDT-LVAIFGGVEGHRDEV 164 (366)
T ss_dssp ---CEEEEECTTTC--CEEEEEESC-CSCEEEEEECSSCTTEEEEEET---TSCEEEEETTTTE-EEEEECSTTSCSSCE
T ss_pred ---CEEEEEEchhc--eEeeeecCC-CCcEEEEEECCCCCCEEEEEeC---CCeEEEEEeecCe-EEEEecccccccCce
Confidence 35888888876 333344333 33445788999 8888775543 3468899998876 33322 222222
Q ss_pred -eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeE--------------------------ecCCCCcccceEEE
Q 006375 223 -DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVL--------------------------IPHRESVKLQDIQL 275 (648)
Q Consensus 223 -~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~ 275 (648)
...|+|+|+.|+..+.. ..|...|+........+ ........+..+.+
T Consensus 165 ~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 165 LSADYDLLGEKIMSCGMD-----HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp EEEEECTTSSEEEEEETT-----SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred eEEEECCCCCEEEEecCC-----CCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 34589999877665543 35777777642111000 00012234666777
Q ss_pred eCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCc-----eeecCCCeeeeeCCCCccc--ccEEEEEEeeCCCCCEEE
Q 006375 276 FIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGK-----SVEFIDPVYSIDPSESVFS--SRILRFHYSSLRTPPSVY 348 (648)
Q Consensus 276 ~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~-----~i~~~~~~~~v~~~~~~~~--~~~l~~~~ss~~~P~~~~ 348 (648)
.++.++ ....++ .+.+|++.........+.... ...+......+..+.++++ +..+. +.+ .-+.++
T Consensus 240 ~~~~l~-~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~-~~~---~dg~i~ 312 (366)
T 3k26_A 240 LGDLIL-SKSCEN--AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA-LGN---QVGKLY 312 (366)
T ss_dssp ETTEEE-EECSSS--EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE-EEC---TTSCEE
T ss_pred cCCEEE-EEecCC--EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE-EEe---cCCcEE
Confidence 766444 444443 577888764322111111000 0011111112334555666 66433 322 235688
Q ss_pred EEECCCCc
Q 006375 349 DYDMDMGI 356 (648)
Q Consensus 349 ~~d~~~~~ 356 (648)
.+|+.+++
T Consensus 313 vwd~~~~~ 320 (366)
T 3k26_A 313 VWDLEVED 320 (366)
T ss_dssp EEECCSSS
T ss_pred EEECCCCC
Confidence 88888765
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.4e-05 Score=80.14 Aligned_cols=198 Identities=13% Similarity=0.135 Sum_probs=115.4
Q ss_pred EEeeEEeCCC-CCEEEEEEeCCCCeEEEEEEEECCCCC------eeec-----cccCccceeEEecCC-eEEEEEeCCCC
Q 006375 82 SVGCFQVSPD-NKLVAYAEDTKGDEIYTVYVIDIETGT------PVGK-----PLVGVTASVEWAGNE-ALVYITMDEIL 148 (648)
Q Consensus 82 ~~~~~~~SPD-G~~la~~~~~~G~e~~~l~v~dl~~g~------~~~~-----~~~~~~~~~~WspDg-~l~y~~~~~~~ 148 (648)
.+..+.|||| +++|+-. ..+| .|+++|+.+++ .... ........++|+||+ .++++...
T Consensus 115 ~v~~~~~~~~~~~~l~s~-~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 186 (416)
T 2pm9_A 115 SVKTVKFNAKQDNVLASG-GNNG----EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS--- 186 (416)
T ss_dssp CCCEEEECSSSTTBEEEE-CSSS----CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS---
T ss_pred ceEEEEEcCCCCCEEEEE-cCCC----eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC---
Confidence 5668899999 6666544 3334 69999999886 2211 112234569999996 66666542
Q ss_pred CCceEEEEECCCCCCCcEEEEeecC-----CCeEEEEEeCCCCc-EEEEEEccccccEEEEEECCCCC-ceeEee-eccc
Q 006375 149 RPDKAWLHKLEADQSNDICLYHEKD-----DIYSLGLQASESKK-FLFIASESKITRFVFYLDVSKPE-ELRVLT-PRVV 220 (648)
Q Consensus 149 ~~~~l~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~s~Dg~-~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~-~~~~ 220 (648)
...|..+++.++ +....+.... ......+.|+|+++ .++..+.......|+++|+.++. ....+. ....
T Consensus 187 -dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~ 263 (416)
T 2pm9_A 187 -SNFASIWDLKAK--KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK 263 (416)
T ss_dssp -SSCEEEEETTTT--EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS
T ss_pred -CCCEEEEECCCC--CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC
Confidence 234888898876 2333333221 23455789999985 44443333333478899998763 223333 2222
Q ss_pred ce-eeeEee-cCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE--EEEEEecCCeeEEEEEE
Q 006375 221 GV-DTAASH-RGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH--LAVYEREGGLQKITTYR 296 (648)
Q Consensus 221 ~~-~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~l~v~~ 296 (648)
.+ ...|+| ++..|+..+.. ..|...|+.+......+..+.. .+..+.+.++. +++....++ .+.+|+
T Consensus 264 ~v~~~~~s~~~~~~l~s~~~d-----g~v~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~l~s~~~d~--~i~iw~ 334 (416)
T 2pm9_A 264 GILSLDWCHQDEHLLLSSGRD-----NTVLLWNPESAEQLSQFPARGN--WCFKTKFAPEAPDLFACASFDN--KIEVQT 334 (416)
T ss_dssp CEEEEEECSSCSSCEEEEESS-----SEEEEECSSSCCEEEEEECSSS--CCCCEEECTTCTTEEEECCSSS--EEEEEE
T ss_pred ceeEEEeCCCCCCeEEEEeCC-----CCEEEeeCCCCccceeecCCCC--ceEEEEECCCCCCEEEEEecCC--cEEEEE
Confidence 22 345888 77765554432 4688888876332222333332 35666776643 555554444 577888
Q ss_pred cCC
Q 006375 297 LPA 299 (648)
Q Consensus 297 ~~~ 299 (648)
+..
T Consensus 335 ~~~ 337 (416)
T 2pm9_A 335 LQN 337 (416)
T ss_dssp SCC
T ss_pred ccC
Confidence 874
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00039 Score=70.34 Aligned_cols=143 Identities=8% Similarity=0.046 Sum_probs=90.6
Q ss_pred EEeeEEeCC--CCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc---ccCccceeEEecCCeEEEEEeCCCCCCceEEEE
Q 006375 82 SVGCFQVSP--DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP---LVGVTASVEWAGNEALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 82 ~~~~~~~SP--DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~---~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~ 156 (648)
.+..+.++| +|++++-... +| +|+++|+.+++..... .......++|+|||.++.+... ...|..+
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~-dg----~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~----dg~i~iw 197 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADN-RG----TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP----DGILDVY 197 (343)
T ss_dssp CEEEEECCC---CCEEEEEET-TC----CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT----TSCEEEE
T ss_pred CEEEEEcCCCCCCCEEEEEeC-CC----cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC----CCEEEEE
Confidence 477889999 9999886553 34 6999999998875321 1223456999999955555432 2358888
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee---cccc---eeeeEeecC
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP---RVVG---VDTAASHRG 230 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~---~~~~---~~~~~s~dg 230 (648)
++.++.. ....+..........+.|+|||++|+..+. + .|.++|+.+++....+.. .... ....|+|+|
T Consensus 198 d~~~~~~-~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~--~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 272 (343)
T 3lrv_A 198 NLSSPDQ-ASSRFPVDEEAKIKEVKFADNGYWMVVECD--Q--TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG 272 (343)
T ss_dssp ESSCTTS-CCEECCCCTTSCEEEEEECTTSSEEEEEES--S--BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS
T ss_pred ECCCCCC-CccEEeccCCCCEEEEEEeCCCCEEEEEeC--C--eEEEEEcCCCCcceeecccccccccccceEEEECCCC
Confidence 9988732 113343312344557899999999886552 2 799999988762222221 1111 126699999
Q ss_pred CEEEEEec
Q 006375 231 NHFFITRR 238 (648)
Q Consensus 231 ~~l~~~~~ 238 (648)
+.|+..+.
T Consensus 273 ~~l~~~s~ 280 (343)
T 3lrv_A 273 KNMIAYSN 280 (343)
T ss_dssp SEEEEEET
T ss_pred CEEEEecC
Confidence 98776554
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00047 Score=71.98 Aligned_cols=253 Identities=13% Similarity=0.072 Sum_probs=132.2
Q ss_pred eEEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-ccc---CccceeEEecCCeEEE
Q 006375 66 HLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV---GVTASVEWAGNEALVY 141 (648)
Q Consensus 66 ~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~---~~~~~~~WspDg~l~y 141 (648)
+-+||...+.. . +-+.-+.||++ +.||...+ + +|+|||+.+|+.... ... +....++|+|||.++.
T Consensus 94 ~~~l~ap~~~~--d-~y~~~l~wS~~-n~lAvgld--~----tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~la 163 (420)
T 4gga_A 94 DRILDAPEIRN--D-YYLNLVDWSSG-NVLAVALD--N----SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA 163 (420)
T ss_dssp SEEEECTTCCC--C-TTCBCEEECTT-SEEEEEET--T----EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred ceEEECCCCcc--c-ccceeEEECCC-CEEEEEeC--C----EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEE
Confidence 34467555432 2 22346789986 58888774 3 799999999986642 222 2345699999994434
Q ss_pred EEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeeccc
Q 006375 142 ITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVV 220 (648)
Q Consensus 142 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~ 220 (648)
+...+ ..|.++++.++ +....+..+.. .... ++.+++.|+..+ ....++++|..... ....+.....
T Consensus 164 sgs~D----g~v~iWd~~~~--~~~~~~~~h~~-~v~~--~s~~~~~l~sgs---~d~~i~~~d~~~~~~~~~~~~~h~~ 231 (420)
T 4gga_A 164 VGTSS----AEVQLWDVQQQ--KRLRNMTSHSA-RVGS--LSWNSYILSSGS---RSGHIHHHDVRVAEHHVATLSGHSQ 231 (420)
T ss_dssp EEETT----SCEEEEETTTT--EEEEEECCCSS-CEEE--EEEETTEEEEEE---TTSEEEEEETTSSSCEEEEEECCSS
T ss_pred EEECC----CeEEEEEcCCC--cEEEEEeCCCC-ceEE--EeeCCCEEEEEe---CCCceeEeeecccceeeEEeccccc
Confidence 44322 34888888776 23333333222 2223 345666665332 23567788877654 2222332222
Q ss_pred ce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee--EecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEE
Q 006375 221 GV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTY 295 (648)
Q Consensus 221 ~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~ 295 (648)
.. ...++++|..++...+. ..+.+.+......... .........+..+.+.. ..+++...-.....|.+|
T Consensus 232 ~~~~~~~~~~g~~l~s~~~D-----~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iw 306 (420)
T 4gga_A 232 EVCGLRWAPDGRHLASGGND-----NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306 (420)
T ss_dssp CEEEEEECTTSSEEEEEETT-----SCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred ceeeeeecCCCCeeeeeecc-----ccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence 22 24588999877666554 2455666654221111 11111222344455443 344443332223468888
Q ss_pred EcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 296 RLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 296 ~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
++.. +... ..+..... +....+.++++.++.... ..-..++.+|..+++.
T Consensus 307 d~~t-~~~~------~~~~~~~~---v~~~~~~~~~~~lv~~sg--~~d~~I~iwd~~~~~~ 356 (420)
T 4gga_A 307 NVCS-GACL------SAVDAHSQ---VCSILWSPHYKELISGHG--FAQNQLVIWKYPTMAK 356 (420)
T ss_dssp ETTT-TEEE------EEEECSSC---EEEEEEETTTTEEEEEEC--TTTCCEEEEETTTCCE
T ss_pred eCCc-cccc------eeeccccc---eeeeeecCCCCeEEEEEe--cCCCEEEEEECCCCcE
Confidence 8874 2211 11221111 222334456666554332 2235688889988873
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00042 Score=70.55 Aligned_cols=184 Identities=12% Similarity=0.101 Sum_probs=107.5
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecC--CeEEEEEeCCCCCCceEEEEEC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGN--EALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspD--g~l~y~~~~~~~~~~~l~~~~l 158 (648)
+....|+||+++|+-.. .+| +|++||+++++.+.... ......+.|+|+ |.++++...+ ..|..+++
T Consensus 157 v~~~~~~~~~~~l~t~s-~D~----~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D----g~v~~wd~ 227 (354)
T 2pbi_B 157 LSACSFTNSDMQILTAS-GDG----TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD----KKAMVWDM 227 (354)
T ss_dssp EEEEEECSSSSEEEEEE-TTS----EEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT----SCEEEEET
T ss_pred EEEEEEeCCCCEEEEEe-CCC----cEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC----CeEEEEEC
Confidence 56789999999887554 333 79999999998664211 122334778774 5555555432 34888898
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc--cc-eeeeEeecCCEEEE
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV--VG-VDTAASHRGNHFFI 235 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~--~~-~~~~~s~dg~~l~~ 235 (648)
.++ +....+... ......+.|+|+|++|+..+. +..|.++|+.++.....+.... .. ....|+|+|..|+.
T Consensus 228 ~~~--~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~---D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 228 RSG--QCVQAFETH-ESDVNSVRYYPSGDAFASGSD---DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp TTC--CEEEEECCC-SSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred CCC--cEEEEecCC-CCCeEEEEEeCCCCEEEEEeC---CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence 876 233344333 234457889999998875443 3458888988765122222111 11 23458999987765
Q ss_pred EeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE-EEEEEecCC
Q 006375 236 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGG 288 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~ 288 (648)
.+.. ..|.+.|+........+..+.. .+..+.+.++. .++....++
T Consensus 302 g~~d-----~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 302 GYND-----YTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp EETT-----SCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEETTS
T ss_pred EECC-----CcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcCCC
Confidence 5543 3577778765332222333332 35566665542 333444444
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00027 Score=84.84 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=96.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++||.... +| +|.+||+.+++..... -.+....++|+||| .|+ +... ...|..+++
T Consensus 617 ~v~~~~~s~~~~~l~s~~~-d~----~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~----d~~v~vwd~ 686 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGA-DK----TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA-TCSA----DKKVKIWDS 686 (1249)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE-EEET----TSEEEEEET
T ss_pred cEEEEEECCCCCEEEEEeC-CC----eEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEE-EEeC----CCeEEEEEC
Confidence 4668899999999987643 33 7999999999866421 12234569999999 554 4432 235888999
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEEe
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITR 237 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~ 237 (648)
.++ +....+..+. .....+.|+|++...++.+.+ .+..|.++|+.+++....+......+ ...|+|+|+.|+..+
T Consensus 687 ~~~--~~~~~~~~~~-~~v~~~~~~~~~~~~~l~sg~-~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 687 ATG--KLVHTYDEHS-EQVNCCHFTNKSNHLLLATGS-NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp TTC--CEEEEEECCS-SCEEEEEECSSSSCCEEEEEE-TTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred CCC--ceEEEEcCCC-CcEEEEEEecCCCceEEEEEe-CCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEE
Confidence 887 3344444332 334467899975543332222 23568889998876222333333333 345999999776665
Q ss_pred ccCCCCCcEEEEEeCCC
Q 006375 238 RSDELFNSELLACPVDN 254 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~ 254 (648)
.. ..|...|+.+
T Consensus 763 ~d-----g~v~vwd~~~ 774 (1249)
T 3sfz_A 763 AD-----GTLRLWDVRS 774 (1249)
T ss_dssp SS-----SEEEEEEGGG
T ss_pred CC-----CeEEEEeCCC
Confidence 53 3566667654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00096 Score=68.59 Aligned_cols=250 Identities=12% Similarity=-0.007 Sum_probs=129.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCC------eee-cc-ccCccceeEEecC----C---eEEEEEeCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT------PVG-KP-LVGVTASVEWAGN----E---ALVYITMDE 146 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~------~~~-~~-~~~~~~~~~WspD----g---~l~y~~~~~ 146 (648)
.+..+.|+| ++|+... .+| .|++||+++++ ... .. -......++|+|| | .++++...+
T Consensus 18 ~i~~~~~~~--~~l~s~~-~dg----~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCS-GDG----YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp CEEEEEECS--SEEEEEE-TTS----EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred CeEEEEecC--CeEEEEc-CCC----EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 456788999 6666554 334 79999999887 221 11 1222456999999 8 777766532
Q ss_pred CCCCceEEEEECCCCCCCc---EEEEeecC----CCeEEEEEeC----CCCcE-EEEEEccccccEEEEEECCC------
Q 006375 147 ILRPDKAWLHKLEADQSND---ICLYHEKD----DIYSLGLQAS----ESKKF-LFIASESKITRFVFYLDVSK------ 208 (648)
Q Consensus 147 ~~~~~~l~~~~l~~~~~~~---~~~~~~~~----~~~~~~~~~s----~Dg~~-l~~~~~~~~~~~l~~~dl~~------ 208 (648)
..|+.+++.++.... ...+.... ......+.|+ |++++ |+..+. ...|+++|+.+
T Consensus 91 ----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 91 ----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV---KGTTYIWKFHPFADESN 163 (397)
T ss_dssp ----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET---TSCEEEEEEESSSSHHH
T ss_pred ----CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC---CCcEEEEeCCccccccc
Confidence 347777776653211 22333221 1344577899 99998 665433 24577777766
Q ss_pred CCcee-----Eeee-------cccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecC---C--CCccc
Q 006375 209 PEELR-----VLTP-------RVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPH---R--ESVKL 270 (648)
Q Consensus 209 ~~~~~-----~l~~-------~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~--~~~~~ 270 (648)
++... .+.. .... ....|+|+| .|+..+. +..|..+|+.... ....+.. . ....+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-----dg~i~i~d~~~~~-~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN-----NGTVQISELSTLR-PLYNFESQHSMINNSNSI 236 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT-----TSEEEEEETTTTE-EEEEEECCC---CCCCCE
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC-----CCcEEEEECCCCc-eeEEEeccccccccCCcc
Confidence 43122 3321 1111 234589988 4444333 2478888887632 2223332 1 02235
Q ss_pred ceEEEe--CCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCc---eeecC--CCeeeeeCCCCcccccEEEEEEeeCCC
Q 006375 271 QDIQLF--IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGK---SVEFI--DPVYSIDPSESVFSSRILRFHYSSLRT 343 (648)
Q Consensus 271 ~~~~~~--~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~---~i~~~--~~~~~v~~~~~~~~~~~l~~~~ss~~~ 343 (648)
..+.+. ++.++....+++...+.+|++.. +..+..+.... ..... .....+..+.+++++..++ +.+ .
T Consensus 237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~---~ 311 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC-SAG---W 311 (397)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE-EEE---T
T ss_pred ceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCCCCEEE-EEe---C
Confidence 566664 44555555444446889999874 22221111000 00000 0111233345556666433 332 3
Q ss_pred CCEEEEEECCCCcE
Q 006375 344 PPSVYDYDMDMGIS 357 (648)
Q Consensus 344 P~~~~~~d~~~~~~ 357 (648)
-..++.+|+.+++.
T Consensus 312 dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 312 DGKLRFWDVKTKER 325 (397)
T ss_dssp TSEEEEEETTTTEE
T ss_pred CCeEEEEEcCCCce
Confidence 46899999988873
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00062 Score=69.39 Aligned_cols=122 Identities=16% Similarity=0.085 Sum_probs=73.0
Q ss_pred EeCCCCCEEEEEEeCC-CCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeC-----CCCCCceEEEEECC
Q 006375 87 QVSPDNKLVAYAEDTK-GDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMD-----EILRPDKAWLHKLE 159 (648)
Q Consensus 87 ~~SPDG~~la~~~~~~-G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~-----~~~~~~~l~~~~l~ 159 (648)
...|||+++ |..+.. ......|+++|.++++.+....-+....++.|||| ++|....- ...+...|..+|..
T Consensus 39 ~~~pd~~~v-yV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 39 APAPDARRV-YVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCCTTEE-EEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred ccCCCCCEE-EEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 457999985 555543 10124899999999987743222222249999999 66554320 00123458888888
Q ss_pred CCCCCcEEEEee-cC---CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 160 ADQSNDICLYHE-KD---DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 160 ~~~~~~~~~~~~-~~---~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
+......+.... .. ...-..+.+||||+++++. +....+.|.++|+++++
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVa-n~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFY-QFSPAPAVGVVDLEGKA 171 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEE-ECSSSCEEEEEETTTTE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEE-EcCCCCeEEEEECCCCc
Confidence 763222221111 00 0011245789999999875 33345789999999987
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0003 Score=71.62 Aligned_cols=195 Identities=13% Similarity=0.041 Sum_probs=110.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec----cccCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK----PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~----~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
.+..+.|||||++|+.... +| .|+++|+++++.... ........++|+||+ .|+....+ ..|..+
T Consensus 54 ~v~~~~~~~~~~~l~~~~~-dg----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~ 123 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGT-DR----NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS-----RVISIC 123 (372)
T ss_dssp CEEEEEEETTTTEEEEEET-TS----CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT-----SSEEEE
T ss_pred cccEEEEeCCCCEEEEEcC-CC----eEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----CEEEEE
Confidence 5678899999999987653 34 688999988864321 122234569999999 66544322 236666
Q ss_pred ECCCCCCCc-EEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECC------------------CCCceeEeee
Q 006375 157 KLEADQSND-ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS------------------KPEELRVLTP 217 (648)
Q Consensus 157 ~l~~~~~~~-~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~------------------~~~~~~~l~~ 217 (648)
++.+..... ...+..........+.|+||+++|+..+. ...|+++|+. .++....+..
T Consensus 124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
T 1k8k_C 124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC---DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 200 (372)
T ss_dssp EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET---TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC---CCCEEEEEcccccccccccccccccccchhhheEecCC
Confidence 666552111 11221222334557899999998876543 3457888854 2221222222
Q ss_pred cccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEE
Q 006375 218 RVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYR 296 (648)
Q Consensus 218 ~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~ 296 (648)
....+ ...|+|+|+.|+..+.. ..|...|+........+..+. ..+..+.+.++..++....++ .+.+|+
T Consensus 201 ~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~d~--~i~i~~ 271 (372)
T 1k8k_C 201 SCGWVHGVCFSANGSRVAWVSHD-----STVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAGHDC--FPVLFT 271 (372)
T ss_dssp CSSCEEEEEECSSSSEEEEEETT-----TEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEETTS--SCEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCceeEEEccCC--CCeEEEEEecCCCEEEEEeCC--eEEEEE
Confidence 22222 34589999877666543 467788886533222232222 235566666543333333444 455666
Q ss_pred cC
Q 006375 297 LP 298 (648)
Q Consensus 297 ~~ 298 (648)
+.
T Consensus 272 ~~ 273 (372)
T 1k8k_C 272 YD 273 (372)
T ss_dssp EE
T ss_pred cc
Confidence 65
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00021 Score=75.02 Aligned_cols=154 Identities=11% Similarity=0.090 Sum_probs=95.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCC-Ceeec------cc---cCccceeEEecCC-eEEEEEeCCCCCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG-TPVGK------PL---VGVTASVEWAGNE-ALVYITMDEILRP 150 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g-~~~~~------~~---~~~~~~~~WspDg-~l~y~~~~~~~~~ 150 (648)
.+..+.|||||++|+.. . +| .|.+||+.++ +.... .+ ......++|+||+ .++++...+
T Consensus 179 ~v~~~~~~~~~~~l~s~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---- 248 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-D-DL----RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK---- 248 (447)
T ss_dssp CCCEEEECTTSSEEEEE-C-SS----EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT----
T ss_pred ceEEEEEcCCCCEEEEe-C-CC----eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC----
Confidence 46688999999999875 3 34 7999999843 32210 11 2234569999998 777766533
Q ss_pred ceEEEEECCCCCCC--cEEEEeecCC-----------CeEEEEEeCCCCcEEEEEEccccccEEEEEECCC-CCceeEee
Q 006375 151 DKAWLHKLEADQSN--DICLYHEKDD-----------IYSLGLQASESKKFLFIASESKITRFVFYLDVSK-PEELRVLT 216 (648)
Q Consensus 151 ~~l~~~~l~~~~~~--~~~~~~~~~~-----------~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~-~~~~~~l~ 216 (648)
..|..+++.++... ....+..... .....+.|+|||++|+..+. ..|.++|+.. ++....+.
T Consensus 249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~v~iwd~~~~~~~~~~~~ 324 (447)
T 3dw8_B 249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY----LSVKVWDLNMENRPVETYQ 324 (447)
T ss_dssp SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES----SEEEEEETTCCSSCSCCEE
T ss_pred CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC----CeEEEEeCCCCccccceee
Confidence 34888888876321 1344544322 14457899999999875432 6789999986 44222232
Q ss_pred ecccc----------------eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 217 PRVVG----------------VDTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 217 ~~~~~----------------~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
..... ....|+|+|+.|+..+. +..|...|+.+
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~-----dg~v~iwd~~~ 373 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY-----NNFFRMFDRNT 373 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS-----TTEEEEEETTT
T ss_pred ccccccccccccccccccccceEEEECCCCCEEEEecc-----CCEEEEEEcCC
Confidence 22110 11569999998744333 24677778765
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=98.16 E-value=7.1e-06 Score=85.16 Aligned_cols=110 Identities=10% Similarity=0.096 Sum_probs=65.7
Q ss_pred CCCcEEEEecCCCCCC------CCCCCc----hhHHHHHHCCCEEEEEccCCCCCCChhhh------hcccccC------
Q 006375 404 GSDPLLLYGYGSYEIC------NDPAFN----SSRLSLLDRGFIFAIAQIRGGGELGRQWY------ENGKFLK------ 461 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~------~~~~~~----~~~~~l~~~G~~v~~~~~rG~g~~g~~~~------~~~~~~~------ 461 (648)
+..|.||++||..+.. ....|. .....|.++||.|+++|++|.|.....-. ..+....
T Consensus 50 ~~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G~G~S~~~~~~l~~~i~~g~g~sg~~~~~ 129 (431)
T 2hih_A 50 KNKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSALASNHERAVELYYYLKGGRVDYGAAHSE 129 (431)
T ss_dssp SCSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHCEEEECCHHHHH
T ss_pred CCCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCCCCCCccchHHhhhhhhhccccccccccc
Confidence 3456799999965532 123343 35677888999999999998765321100 0000000
Q ss_pred ---CCCcHhHHHHHHHHHHHcCCCC-CCeEEEEeeChhHHHHHHHHhh--------------------------CCCcee
Q 006375 462 ---KKNTFTDFIACAEYLIKNCYCT-KEKLCIEGRSAGGLLIGAVLNM--------------------------RPDLFK 511 (648)
Q Consensus 462 ---~~~~~~D~~~~~~~l~~~~~~d-~~~i~i~G~S~GG~l~~~~~~~--------------------------~p~~~~ 511 (648)
...-.+|+.+.++ . .. ..++.++||||||.++..++.. +|++++
T Consensus 130 ~~~~~~~a~dl~~ll~----~--l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~ 203 (431)
T 2hih_A 130 KYGHERYGKTYEGVLK----D--WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVT 203 (431)
T ss_dssp HHTCCSEEEEECCSCT----T--CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEE
T ss_pred cCCHHHHHHHHHHHHH----H--hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCccccee
Confidence 0000011111111 1 11 2789999999999999888765 688899
Q ss_pred EEEecCCc
Q 006375 512 AAVAAVPF 519 (648)
Q Consensus 512 a~v~~~~~ 519 (648)
.+|+.++.
T Consensus 204 slv~i~tP 211 (431)
T 2hih_A 204 SITTIATP 211 (431)
T ss_dssp EEEEESCC
T ss_pred EEEEECCC
Confidence 98887764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00015 Score=76.19 Aligned_cols=194 Identities=14% Similarity=0.169 Sum_probs=110.4
Q ss_pred EEeeEEeCC-CCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccc---cCccceeEEecC-CeEEEEEeCCCCCCceEEE
Q 006375 82 SVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPL---VGVTASVEWAGN-EALVYITMDEILRPDKAWL 155 (648)
Q Consensus 82 ~~~~~~~SP-DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~---~~~~~~~~WspD-g~l~y~~~~~~~~~~~l~~ 155 (648)
.+..+.|+| ++++||... .+| +|+|||+.+++... ... .+....++|+|. +.++++...+ ..|..
T Consensus 121 ~V~~l~~~P~~~~~lasGs-~dg----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D----~~v~i 191 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGS-KGG----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME----GTTRL 191 (435)
T ss_dssp CEEEEEECSSCTTCEEEEE-TTS----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS----SCEEE
T ss_pred CEEEEEEeCCCCCEEEEEe-CCC----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC----CEEEE
Confidence 377899999 566777654 344 69999998876432 122 223456999985 5555665432 34778
Q ss_pred EECCCCCCCcEEEEeecC-CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEE
Q 006375 156 HKLEADQSNDICLYHEKD-DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHF 233 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l 233 (648)
+++.+. ....+..... ......+.++|||++|+..+. ...|+++|+++.. ...+......+ ...|+|+++.+
T Consensus 192 wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 192 QDFKGN--ILRVFASSDTINIWFCSLDVSASSRMVVTGDN---VGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp EETTSC--EEEEEECCSSCSCCCCCEEEETTTTEEEEECS---SSBEEEEESSSCB-CCCSBCCSSCEEEEEECTTCSSE
T ss_pred eeccCC--ceeEEeccCCCCccEEEEEECCCCCEEEEEeC---CCcEeeeccCcce-eEEEecccceEEeeeecCCCceE
Confidence 888764 2222222221 223446789999998875433 3468889987654 44444333333 24588999877
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeE---ecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcCC
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVL---IPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
+++...+ ..|.+.|+........+ ..+.. .+..+.+.+ ..++ ....++ .+.+|++..
T Consensus 266 ~~s~s~d----~~v~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~spdg~~l~-s~~~D~--~i~iwd~~~ 327 (435)
T 4e54_B 266 LATASVD----QTVKIWDLRQVRGKASFLYSLPHRH--PVNAACFSPDGARLL-TTDQKS--EIRVYSASQ 327 (435)
T ss_dssp EEEEETT----SBCCEEETTTCCSSSCCSBCCBCSS--CEEECCBCTTSSEEE-EEESSS--CEEEEESSS
T ss_pred EEEecCc----ceeeEEecccccccceEEEeeeccc--cccceeECCCCCeeE-EEcCCC--EEEEEECCC
Confidence 6665443 24555676543222111 12222 244444444 4444 333443 577888764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=7.2e-05 Score=89.92 Aligned_cols=241 Identities=14% Similarity=0.113 Sum_probs=135.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.+||||++++.... +| .|+++|+.+++..... -......++|+||| .++.... ...|..+++
T Consensus 963 ~i~~~~~sp~g~~l~~g~~-~g----~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-----dg~i~vwd~ 1032 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDE-DG----AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE-----DSVIQVWNW 1032 (1249)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECS-----SSBEEEEET
T ss_pred cEEEEEEcCCCCEEEEEcC-CC----CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcC-----CCEEEEEEC
Confidence 3667899999999998764 34 6899999998865431 12234569999999 6654332 235888888
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEe
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITR 237 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~ 237 (648)
.++. . +...........+.+++|++.+.. + ....|+++|+.+++....+...... ....|+|+|+.|+..+
T Consensus 1033 ~~~~---~-~~~~~~~~~v~~~~~~~~~~l~~~-~---~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s 1104 (1249)
T 3sfz_A 1033 QTGD---Y-VFLQAHQETVKDFRLLQDSRLLSW-S---FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS 1104 (1249)
T ss_dssp TTTE---E-ECCBCCSSCEEEEEECSSSEEEEE-E---SSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEEC
T ss_pred CCCc---e-EEEecCCCcEEEEEEcCCCcEEEE-E---CCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEc
Confidence 7762 2 222222334456789998875433 2 2357999999888723333333222 2356999999876655
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcCCCCCcccccCCCcee-ec
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV-EF 315 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i-~~ 315 (648)
.. ..|...++.+......+..+.. .+..+.+.++. ++++...++ .+.+|++.. +..+..+...... ..
T Consensus 1105 ~d-----~~v~iwd~~~~~~~~~l~~h~~--~v~~~~~s~dg~~lat~~~dg--~i~vwd~~~-~~~~~~~~~~~~~~~~ 1174 (1249)
T 3sfz_A 1105 AD-----KTAKIWSFDLLSPLHELKGHNG--CVRCSAFSLDGILLATGDDNG--EIRIWNVSD-GQLLHSCAPISVEEGT 1174 (1249)
T ss_dssp CS-----SCCCEECSSSSSCSBCCCCCSS--CEEEEEECSSSSEEEEEETTS--CCCEEESSS-SCCCCCCCCCC-----
T ss_pred CC-----CcEEEEECCCcceeeeeccCCC--cEEEEEECCCCCEEEEEeCCC--EEEEEECCC-CceEEEeccccccccc
Confidence 43 2455667655332221222322 35556665542 333444444 477788874 2222111000000 00
Q ss_pred CCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 316 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
......+..+.+++++..+. +. + +.+..+|+.+++
T Consensus 1175 ~~~~~~v~~l~fs~dg~~l~-s~-~----g~v~vwd~~~g~ 1209 (1249)
T 3sfz_A 1175 ATHGGWVTDVCFSPDSKTLV-SA-G----GYLKWWNVATGD 1209 (1249)
T ss_dssp --CCSCCCEEEECTTSSCEE-EE-S----SSEEEBCSSSCB
T ss_pred cccCceEEEEEECCCCCEEE-EC-C----CeEEEEECCCCc
Confidence 11111233455667777553 32 2 678899988887
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0019 Score=62.53 Aligned_cols=196 Identities=7% Similarity=0.048 Sum_probs=120.1
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc--CccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV--GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~--~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
...++.|+|+++.|.++-...+ .|++++++++........ .....+++.|++ .||++.. ...+|+++++
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~----~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~----~~~~I~~~~~ 108 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEP----SIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS----QLDRIEVAKM 108 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTT----EEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET----TTTEEEEEET
T ss_pred cEEEEEEecCCCEEEEEECCCC----EEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC----CCCEEEEEEc
Confidence 3458899999988776644333 789999987754322111 123458899987 7766532 2356888888
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-ccc-eeeeEeecCCEEEEE
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHFFIT 236 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-~~~-~~~~~s~dg~~l~~~ 236 (648)
.+. ....+.... ...-.++.++|++.+|++.........|+++++++.. .+.+... ... ....++++++.||+.
T Consensus 109 ~g~--~~~~~~~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~ 184 (267)
T 1npe_A 109 DGT--QRRVLFDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWV 184 (267)
T ss_dssp TSC--SCEEEECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred CCC--CEEEEEECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEE
Confidence 754 223333222 1233467889988888876543335789999988754 3433321 111 224588889988877
Q ss_pred eccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 237 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
... ..+|.+++.++ .....+++.. ....++..+++.+++....+ .++.+++.+
T Consensus 185 d~~----~~~I~~~~~~g-~~~~~~~~~~--~~P~gi~~d~~~lyva~~~~--~~v~~~d~~ 237 (267)
T 1npe_A 185 DAG----THRAECLNPAQ-PGRRKVLEGL--QYPFAVTSYGKNLYYTDWKT--NSVIAMDLA 237 (267)
T ss_dssp ETT----TTEEEEEETTE-EEEEEEEECC--CSEEEEEEETTEEEEEETTT--TEEEEEETT
T ss_pred ECC----CCEEEEEecCC-CceEEEecCC--CCceEEEEeCCEEEEEECCC--CeEEEEeCC
Confidence 553 35899999875 2222233321 23456777888887765443 467777766
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-05 Score=82.38 Aligned_cols=152 Identities=8% Similarity=0.031 Sum_probs=84.8
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCe-eecccc---CccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGKPLV---GVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~-~~~~~~---~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
.+..+.|||||++||.... ...|+++|+.++.. ....+. +....++|+||+ .|+....+ ..|..+
T Consensus 13 ~v~~~~~s~~g~~l~~~~~-----d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~vw 82 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTA-----TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYVY 82 (377)
T ss_dssp CCSCCEECSSSSEEECCCS-----SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT-----SSEEEC
T ss_pred cEEEEEECCCCCEEEEecC-----CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC-----CeEEEE
Confidence 3557899999999986532 23688999988742 211222 234569999999 66544332 247777
Q ss_pred ECCCCC-CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCc---eeEeee-cccce-eeeEeecC
Q 006375 157 KLEADQ-SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEE---LRVLTP-RVVGV-DTAASHRG 230 (648)
Q Consensus 157 ~l~~~~-~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~---~~~l~~-~~~~~-~~~~s~dg 230 (648)
++.++. ......+... ......+.|+||+++|+..+. ...|.++|+.+++. ...+.. ....+ ...|+|+|
T Consensus 83 d~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 158 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRL-NRAATFVRWSPNEDKFAVGSG---ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN 158 (377)
T ss_dssp ------CCCCEEECCCC-SSCEEEEECCTTSSCCEEEES---SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS
T ss_pred EcCCCCceeeeeEeccc-CCceEEEEECCCCCEEEEEec---CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC
Confidence 777653 1122333222 233457899999998876544 34578888877641 233332 22222 34599999
Q ss_pred CEEEEEeccCCCCCcEEEEEeC
Q 006375 231 NHFFITRRSDELFNSELLACPV 252 (648)
Q Consensus 231 ~~l~~~~~~~~~~~~~l~~~~~ 252 (648)
+.|+..+.. ..|...|+
T Consensus 159 ~~l~~~~~d-----~~i~iwd~ 175 (377)
T 3dwl_C 159 VLLAAGCAD-----RKAYVLSA 175 (377)
T ss_dssp SEEEEEESS-----SCEEEEEE
T ss_pred CEEEEEeCC-----CEEEEEEE
Confidence 877666553 23555554
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00044 Score=70.01 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=75.4
Q ss_pred EEeeEEeCCC----CCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEec-CCeEEEEEeCCCCCCceEE
Q 006375 82 SVGCFQVSPD----NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAG-NEALVYITMDEILRPDKAW 154 (648)
Q Consensus 82 ~~~~~~~SPD----G~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~Wsp-Dg~l~y~~~~~~~~~~~l~ 154 (648)
.+..+.|||+ |++|+... .+| .|.++|+.+++..... .......+.|+| |+.++++... ...|+
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~-~dg----~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~----dg~i~ 141 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAG-SRG----IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK----DHALR 141 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEE-TTC----EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET----TSCEE
T ss_pred cEEEEEeccCCCCCCCEEEEec-CCC----EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC----CCeEE
Confidence 4677899999 66776554 334 7999999998866421 223345699999 6655555543 23488
Q ss_pred EEECCCCCCCcEEEEe--ecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 155 LHKLEADQSNDICLYH--EKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
.+++.++ +....+. .........+.|+||+++|+..+. +..|+++|+.+++
T Consensus 142 iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~ 194 (366)
T 3k26_A 142 LWNIQTD--TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---DHSLKLWRINSKR 194 (366)
T ss_dssp EEETTTT--EEEEEECSTTSCSSCEEEEEECTTSSEEEEEET---TSCEEEEESCSHH
T ss_pred EEEeecC--eEEEEecccccccCceeEEEECCCCCEEEEecC---CCCEEEEECCCCc
Confidence 8898776 3333331 122344557899999998876543 3468888988754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00048 Score=71.34 Aligned_cols=197 Identities=8% Similarity=0.070 Sum_probs=113.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc---ccCccceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP---LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~---~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.| ++++|+... .+| .|+++|+.++...... -.+....++|+||+.++++...+ ..|+.+++
T Consensus 178 ~v~~~~~--~~~~l~~~~-~dg----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~v~iwd~ 246 (401)
T 4aez_A 178 RVGCLSW--NRHVLSSGS-RSG----AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND----NVVQIWDA 246 (401)
T ss_dssp CEEEEEE--ETTEEEEEE-TTS----EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT----SCEEEEET
T ss_pred ceEEEEE--CCCEEEEEc-CCC----CEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC----CeEEEccC
Confidence 3455666 566666554 334 7999999854432212 12234569999999433444322 34888898
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEe
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITR 237 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~ 237 (648)
.++ +....+... ......+.|+|+++.+++.........|+++|+.+++ .......... ....|+|+|+.|+..+
T Consensus 247 ~~~--~~~~~~~~~-~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 247 RSS--IPKFTKTNH-NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA-RVNTVDAGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp TCS--SEEEEECCC-SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-EEEEEECSSCEEEEEECSSSSEEEEEE
T ss_pred CCC--CccEEecCC-cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEEECCCCCeEEEEe
Confidence 875 233333332 2334467899999888876543345789999999887 3322222222 3356999999887765
Q ss_pred ccCCCCCcEEEEEeCCCCCccee-EecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcCC
Q 006375 238 RSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~ 299 (648)
.. .+..|.+.++........ .+... ...+..+.+..+. .++....++ .+.+|++..
T Consensus 323 g~---~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~~~dg--~i~iw~~~~ 380 (401)
T 4aez_A 323 GF---PDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPDGRILSTAASDE--NLKFWRVYD 380 (401)
T ss_dssp CT---TTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECTTSSEEEEECTTS--EEEEEECCC
T ss_pred ec---CCCcEEEEecCCccceeEEEecCC-CCCEEEEEECCCCCEEEEEeCCC--cEEEEECCC
Confidence 32 224677777655222221 22222 2235666666543 333444444 678888874
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00048 Score=70.36 Aligned_cols=120 Identities=16% Similarity=0.127 Sum_probs=69.3
Q ss_pred CCCCCEEEEEEeCCC--CeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeC------CCCCCceEEEEECCC
Q 006375 89 SPDNKLVAYAEDTKG--DEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMD------EILRPDKAWLHKLEA 160 (648)
Q Consensus 89 SPDG~~la~~~~~~G--~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~------~~~~~~~l~~~~l~~ 160 (648)
.||+++ +|..+... .....|+++|.++++.+.....+....++++|||+.+|+... .......|..+++.+
T Consensus 12 ~~~~~~-~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 12 APQENR-IYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp SCGGGE-EEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCCE-EEEECCCCCccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 357877 56655421 112489999999998764321222226999999944454431 111234588888877
Q ss_pred CCCCcEEEEeec---CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 161 DQSNDICLYHEK---DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 161 ~~~~~~~~~~~~---~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
......+..... ....-..+.+||||++|++.. ....+.|.++|+++++
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n-~~~~~~v~v~d~~~~~ 142 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN-ASPATSIGIVDVAKGD 142 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEE-ESSSEEEEEEETTTTE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEEC-CCCCCeEEEEECCCCc
Confidence 632221111100 011122467899999998753 2234679999998876
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00031 Score=78.77 Aligned_cols=193 Identities=12% Similarity=0.078 Sum_probs=109.9
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++|+-... +| +|+|||+.+++..... -......++|+||+ .|+ +...+ ..|.++++
T Consensus 432 ~v~~v~~s~~g~~l~sgs~-Dg----~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~D----~~i~iwd~ 501 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSW-DG----ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV-SASRD----RTIKLWNT 501 (694)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEE-EEETT----SCEEEECT
T ss_pred cEEEEEECCCCCEEEEEeC-CC----cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEE-EEeCC----CEEEEEEC
Confidence 4667899999999886543 34 7999999998765321 12224569999999 654 44322 23666666
Q ss_pred CCCCCCcEEEEee--cCCCeEEEEEeCCCCc-EEEEEEccccccEEEEEECCCCCceeE-eeecccce-eeeEeecCCEE
Q 006375 159 EADQSNDICLYHE--KDDIYSLGLQASESKK-FLFIASESKITRFVFYLDVSKPEELRV-LTPRVVGV-DTAASHRGNHF 233 (648)
Q Consensus 159 ~~~~~~~~~~~~~--~~~~~~~~~~~s~Dg~-~l~~~~~~~~~~~l~~~dl~~~~~~~~-l~~~~~~~-~~~~s~dg~~l 233 (648)
.+. ....+... ........+.|+|++. .++++.. .+..|.++|+.+.+ ... +..+...+ ...|+|+|+.|
T Consensus 502 ~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~~l 576 (694)
T 3dm0_A 502 LGE--CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS--WDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGSLC 576 (694)
T ss_dssp TSC--EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEE--TTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCC--cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEe--CCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCCEE
Confidence 433 11122111 1123345678999873 2333332 23458888998876 332 33333333 34699999876
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
+..+.. ..|.+.|+.+.. ....+.. ...+..+.+.++..++....+. .+.+|++..
T Consensus 577 ~sg~~D-----g~i~iwd~~~~~-~~~~~~~--~~~v~~~~~sp~~~~l~~~~~~--~i~iwd~~~ 632 (694)
T 3dm0_A 577 ASGGKD-----GVVLLWDLAEGK-KLYSLEA--NSVIHALCFSPNRYWLCAATEH--GIKIWDLES 632 (694)
T ss_dssp EEEETT-----SBCEEEETTTTE-EEECCBC--SSCEEEEEECSSSSEEEEEETT--EEEEEETTT
T ss_pred EEEeCC-----CeEEEEECCCCc-eEEEecC--CCcEEEEEEcCCCcEEEEEcCC--CEEEEECCC
Confidence 655443 356677876532 2112222 2345666676654444433333 378888873
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.001 Score=66.87 Aligned_cols=238 Identities=10% Similarity=0.031 Sum_probs=125.1
Q ss_pred CCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEE
Q 006375 91 DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLY 169 (648)
Q Consensus 91 DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 169 (648)
++++|..+...+| .|.++|+++++.+.. ........+++++||.+|.+... ...|+.+++.+.. -....
T Consensus 52 ~~~~lyv~~~~~~----~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~----~~~v~~iD~~t~~--~~~~i 121 (328)
T 3dsm_A 52 RDGIGWIVVNNSH----VIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIW----DYRIFIINPKTYE--ITGYI 121 (328)
T ss_dssp ETTEEEEEEGGGT----EEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBS----CSEEEEEETTTTE--EEEEE
T ss_pred ECCEEEEEEcCCC----EEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECC----CCeEEEEECCCCe--EEEEE
Confidence 5566555544333 799999999987542 21122345888899966544321 3568999988762 11122
Q ss_pred eecCC----CeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCCC---
Q 006375 170 HEKDD----IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDEL--- 242 (648)
Q Consensus 170 ~~~~~----~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~--- 242 (648)
..... ....++.+ +++.|++.. ......|+++|+++++....+..........++++|+ +|+.++....
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~-~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~ 197 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNC-WSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGGYEGSP 197 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEE-CTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCBCTTCS
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEc-CCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-EEEEECCCccCCc
Confidence 22210 02123344 566776653 2235689999999876122222221112345788886 7777664210
Q ss_pred ---CCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCC
Q 006375 243 ---FNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID 317 (648)
Q Consensus 243 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~ 317 (648)
....|+++|.++..... .+..........+.+++ +.+++. .. .+++++... +.+.. ...+. .
T Consensus 198 ~~~~~~~v~~id~~t~~v~~-~~~~~~g~~p~~la~~~d~~~lyv~-~~----~v~~~d~~t--~~~~~---~~~~~--~ 264 (328)
T 3dsm_A 198 YGYEAPSLYRIDAETFTVEK-QFKFKLGDWPSEVQLNGTRDTLYWI-NN----DIWRMPVEA--DRVPV---RPFLE--F 264 (328)
T ss_dssp SCBCCCEEEEEETTTTEEEE-EEECCTTCCCEEEEECTTSCEEEEE-SS----SEEEEETTC--SSCCS---SCSBC--C
T ss_pred cccCCceEEEEECCCCeEEE-EEecCCCCCceeEEEecCCCEEEEE-cc----EEEEEECCC--Cceee---eeeec--C
Confidence 02589999987633222 22221112355667764 445443 22 677787763 32210 00111 1
Q ss_pred CeeeeeCCCCcccccEEEEEE-eeCCCCCEEEEEECCCCc
Q 006375 318 PVYSIDPSESVFSSRILRFHY-SSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 318 ~~~~v~~~~~~~~~~~l~~~~-ss~~~P~~~~~~d~~~~~ 356 (648)
......++..++++..++++- .++.....++.+|+. ++
T Consensus 265 ~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 265 RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 001122344566556666653 233456789999987 66
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.5e-05 Score=81.36 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=61.9
Q ss_pred CcEEEEecCCCCCCCC-----CCCch----hHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHH-
Q 006375 406 DPLLLYGYGSYEICND-----PAFNS----SRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEY- 475 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~-----~~~~~----~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~- 475 (648)
.|.||++||..+.... ..|.. .+..|.++||.|+++|++|.|.. +..+ .++.+.++.
T Consensus 6 ~~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g~G~s---~~~a----------~~l~~~i~~~ 72 (387)
T 2dsn_A 6 DAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSN---WDRA----------CEAYAQLVGG 72 (387)
T ss_dssp CCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCSSBCH---HHHH----------HHHHHHHHCE
T ss_pred CCcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCCCCCc---cccH----------HHHHHHHHhh
Confidence 3558899996654321 12432 23678889999999999986642 2111 122222210
Q ss_pred -------HHHc---------------CCCCCCeEEEEeeChhHHHHHHHHhh-------------------CC------C
Q 006375 476 -------LIKN---------------CYCTKEKLCIEGRSAGGLLIGAVLNM-------------------RP------D 508 (648)
Q Consensus 476 -------l~~~---------------~~~d~~~i~i~G~S~GG~l~~~~~~~-------------------~p------~ 508 (648)
+.+. .....+++.++||||||.++..++.+ +| +
T Consensus 73 ~vDy~~~~a~~~~~~~~~~~l~~ll~~~~~~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~~ 152 (387)
T 2dsn_A 73 TVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGHH 152 (387)
T ss_dssp EEECCHHHHHHHTSCSEEEEECCSCGGGGTTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCC
T ss_pred hhhhhhhhhhhccchhhhhhHHHHHHHhcCCCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCcccccccc
Confidence 1000 01234789999999999999888862 35 6
Q ss_pred ceeEEEecCC
Q 006375 509 LFKAAVAAVP 518 (648)
Q Consensus 509 ~~~a~v~~~~ 518 (648)
.++.+|..++
T Consensus 153 ~V~sLV~i~t 162 (387)
T 2dsn_A 153 FVLSVTTIAT 162 (387)
T ss_dssp CEEEEEEESC
T ss_pred ceeEEEEECC
Confidence 7888887765
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0035 Score=64.34 Aligned_cols=196 Identities=10% Similarity=0.104 Sum_probs=112.1
Q ss_pred EEeeEEeCC-CCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc---------------ccCccceeEEecCC-eEEEEEe
Q 006375 82 SVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP---------------LVGVTASVEWAGNE-ALVYITM 144 (648)
Q Consensus 82 ~~~~~~~SP-DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~---------------~~~~~~~~~WspDg-~l~y~~~ 144 (648)
.+..+.||| ||++||.... +| .|.+||+.+++..... -......++|+|++ .++++..
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGS-DG----VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CEEEEEECTTTCCEEEEEET-TS----CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred cEEEEEEecCCCCEEEEEcC-CC----eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 567889999 9999887654 34 6999999987654211 12234569999955 5555554
Q ss_pred CCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCC---CcEEEEEEccccccEEEEEECCCCCceeEeeecccc
Q 006375 145 DEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASES---KKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG 221 (648)
Q Consensus 145 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~D---g~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~ 221 (648)
. ...|..+++.++ +....+... .....+.++++ +..++.... ...|+++|+.+++....+......
T Consensus 120 ~----d~~i~iwd~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~d~~~~~~~~~~~~~~~~ 188 (408)
T 4a11_B 120 F----DKTLKVWDTNTL--QTADVFNFE--ETVYSHHMSPVSTKHCLVAVGTR---GPKVQLCDLKSGSCSHILQGHRQE 188 (408)
T ss_dssp T----TSEEEEEETTTT--EEEEEEECS--SCEEEEEECSSCSSCCEEEEEES---SSSEEEEESSSSCCCEEECCCCSC
T ss_pred C----CCeEEEeeCCCC--ccceeccCC--CceeeeEeecCCCCCcEEEEEcC---CCeEEEEeCCCcceeeeecCCCCc
Confidence 2 235888898876 233333322 22335566664 446665433 346888999877623333333333
Q ss_pred e-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEec--------------CCCCcccceEEEeCCE-EEEEEe
Q 006375 222 V-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIP--------------HRESVKLQDIQLFIDH-LAVYER 285 (648)
Q Consensus 222 ~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-l~~~~~ 285 (648)
+ ...|+|+++.++++...+ ..|...|+.........+. ......+..+.+.++. .++...
T Consensus 189 v~~~~~~~~~~~ll~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASAD----SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp EEEEEECSSCTTEEEEEETT----SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEECCCCCcEEEEEcCC----CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 3 346999999765555442 3577777754221111110 1112235566665542 233344
Q ss_pred cCCeeEEEEEEcCC
Q 006375 286 EGGLQKITTYRLPA 299 (648)
Q Consensus 286 ~~~~~~l~v~~~~~ 299 (648)
.++ .+.+|++..
T Consensus 265 ~dg--~i~vwd~~~ 276 (408)
T 4a11_B 265 TDN--RMRLWNSSN 276 (408)
T ss_dssp TTS--CEEEEETTT
T ss_pred CCC--eEEEEECCC
Confidence 444 578888874
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0017 Score=64.19 Aligned_cols=253 Identities=12% Similarity=0.060 Sum_probs=128.1
Q ss_pred eEEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-ccc---CccceeEEecCCeEEE
Q 006375 66 HLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV---GVTASVEWAGNEALVY 141 (648)
Q Consensus 66 ~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~---~~~~~~~WspDg~l~y 141 (648)
+.+||...+.. .+ -+..+.|||++ .||...| + +|+|||+++|+.+.. ... .....++|+|||.++.
T Consensus 14 ~rvldap~~~~--d~-y~~~l~WS~~~-~lAvg~D--~----tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 14 DRILDAPEIRN--DY-YLNLVDWSSGN-VLAVALD--N----SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp SEEEECTTCCC--CT-TCBCEEECTTS-EEEEEET--T----EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred CEEeeCCCCcc--cc-cceEEEECCCC-EEEEEeC--C----EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEE
Confidence 34568544322 11 12357899997 7887763 3 799999999986642 222 2245699999994444
Q ss_pred EEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeeccc
Q 006375 142 ITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVV 220 (648)
Q Consensus 142 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~ 220 (648)
+...+ ..|..+++.++ +....+..+... . ..++++++.++..+. ...+...+..... ....+.....
T Consensus 84 sgs~D----g~v~iw~~~~~--~~~~~~~~h~~~-~--~~~~~~~~~l~s~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 151 (318)
T 4ggc_A 84 VGTSS----AEVQLWDVQQQ--KRLRNMTSHSAR-V--GSLSWNSYILSSGSR---SGHIHHHDVRVAEHHVATLSGHSQ 151 (318)
T ss_dssp EEETT----SEEEEEETTTT--EEEEEEECCSSC-E--EEEEEETTEEEEEET---TSEEEEEETTSSSCEEEEEECCSS
T ss_pred EEECC----CcEEEeecCCc--eeEEEecCccce-E--EEeecCCCEEEEEec---CCceEeeecCCCceeEEEEcCccC
Confidence 54422 35888888876 233333333222 2 234566666654322 2445566665554 1222322222
Q ss_pred ce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee--EecCCCCcccceEEEe--CCEEEEEEecCCeeEEEEE
Q 006375 221 GV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTY 295 (648)
Q Consensus 221 ~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~l~v~ 295 (648)
.. ...++++|+.|+..+.. ..|.+.|+........ .........+..+.+. +..++..........+.++
T Consensus 152 ~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lw 226 (318)
T 4ggc_A 152 EVCGLRWAPDGRHLASGGND-----NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 226 (318)
T ss_dssp CEEEEEECTTSSEEEEEETT-----SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEE
T ss_pred ceEEEEEcCCCCEEEEEecC-----cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEE
Confidence 22 23478888866544432 3566667764221111 1111112223344443 3344444443444567788
Q ss_pred EcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 296 RLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 296 ~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
+...... . ....... .+......++++.+++. +-..-..++.+|+.+++.
T Consensus 227 d~~~~~~-~------~~~~~~~---~v~~~~~~~~~~~~~~~--sg~~d~~i~iwd~~~~~~ 276 (318)
T 4ggc_A 227 NVCSGAC-L------SAVDAHS---QVCSILWSPHYKELISG--HGFAQNQLVIWKYPTMAK 276 (318)
T ss_dssp ETTTCCE-E------EEEECSS---CEEEEEEETTTTEEEEE--ECTTTCCEEEEETTTCCE
T ss_pred ecccccc-c------cccccee---eeeeeeecccccceEEE--EEcCCCEEEEEECCCCcE
Confidence 8763211 1 1111111 12223334555655433 222345688899988873
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0039 Score=62.07 Aligned_cols=195 Identities=12% Similarity=0.154 Sum_probs=107.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee---eccc---cCccceeEEec--CCeEEEEEeCCCCCCceE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV---GKPL---VGVTASVEWAG--NEALVYITMDEILRPDKA 153 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~---~~~~---~~~~~~~~Wsp--Dg~l~y~~~~~~~~~~~l 153 (648)
.+..+.|||||++||.... +| .|++||+.++... ...+ ......++|+| |+.++++...+ ..|
T Consensus 13 ~v~~~~~~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d----g~v 83 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSS-DQ----HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD----KTV 83 (351)
T ss_dssp CEEEEEECSSSSEEEEEET-TS----EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT----SCE
T ss_pred ceeEEEEcCCCCEEEEeeC-CC----eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC----CeE
Confidence 4678899999999887653 34 7899999876421 1111 22345699999 57444454422 247
Q ss_pred EEEECCCCCCC-------cEEEEeecCCCeEEEEEeCCC--CcEEEEEEccccccEEEEEECCCCCceeEee--------
Q 006375 154 WLHKLEADQSN-------DICLYHEKDDIYSLGLQASES--KKFLFIASESKITRFVFYLDVSKPEELRVLT-------- 216 (648)
Q Consensus 154 ~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~s~D--g~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~-------- 216 (648)
..+++.++... ....+... ......+.|+|+ +++|+..+. +..|+++|+.+++....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDS-KGSLYSVKFAPAHLGLKLACLGN---DGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEET---TCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred EEEecCCCcccccccCcceeeeeccc-CCceeEEEEcCCCCCcEEEEecC---CCcEEEecCCChHHhcccccccccccc
Confidence 77777665321 12222222 334557889999 888876543 3578999988765111110
Q ss_pred -----ecccc-eeeeEeec---CCEEEEEeccCCCCCcEEEEEeCCCCCccee--EecCCCCcccceEEEeCC-----EE
Q 006375 217 -----PRVVG-VDTAASHR---GNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFID-----HL 280 (648)
Q Consensus 217 -----~~~~~-~~~~~s~d---g~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~l 280 (648)
..... ....|+|+ +..|+..+.. ..+...+... +.... .+.. ....+..+.+.++ .+
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~-h~~~i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALE-----QAIIYQRGKD-GKLHVAAKLPG-HKSLIRSISWAPSIGRWYQL 232 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETT-----EEEEEEECTT-SCEEEEEECCC-CCSCEEEEEECCCSSCSSEE
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCC-----CcEEEEccCC-CceeeeeecCC-CCcceeEEEECCCCCCcceE
Confidence 00111 22347776 6655554443 2343334333 22211 2222 2234666777665 56
Q ss_pred EEEEecCCeeEEEEEEcC
Q 006375 281 AVYEREGGLQKITTYRLP 298 (648)
Q Consensus 281 ~~~~~~~~~~~l~v~~~~ 298 (648)
++....++. +.+|++.
T Consensus 233 l~s~~~dg~--i~iwd~~ 248 (351)
T 3f3f_A 233 IATGCKDGR--IRIFKIT 248 (351)
T ss_dssp EEEEETTSC--EEEEEEE
T ss_pred EEEEcCCCe--EEEEeCC
Confidence 666666654 5566665
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00046 Score=72.34 Aligned_cols=200 Identities=11% Similarity=0.081 Sum_probs=114.8
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC----------CCeee-cc-ccCccceeEEecCC-eEEEEEeCCCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET----------GTPVG-KP-LVGVTASVEWAGNE-ALVYITMDEIL 148 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~----------g~~~~-~~-~~~~~~~~~WspDg-~l~y~~~~~~~ 148 (648)
.+..++|+|++..+.++....| .|+++++.+ .+... .. -......++|+|++ .++++...
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--- 202 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSS----DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD--- 202 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSS----CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT---
T ss_pred cEEEEEECCCCCcEEEEECCCC----cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC---
Confidence 3567899998555555554445 689999876 22221 11 11223559999999 57776643
Q ss_pred CCceEEEEECCCCCCCc-----EEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC---ceeEeeeccc
Q 006375 149 RPDKAWLHKLEADQSND-----ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE---ELRVLTPRVV 220 (648)
Q Consensus 149 ~~~~l~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~---~~~~l~~~~~ 220 (648)
...|..+++.++.... ...+... ......+.|+|++..++++.. ....|+++|+.++. ....+.....
T Consensus 203 -dg~i~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 203 -DHTICLWDINATPKEHRVIDAKNIFTGH-TAVVEDVAWHLLHESLFGSVA--DDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp -TSCEEEEETTSCCBGGGEEECSEEECCC-SSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred -CCeEEEEeCCCCCCCCceeccceeecCC-CCCEeeeEEeCCCCCEEEEEe--CCCeEEEEECCCCCCCcceeEeecCCC
Confidence 2348888887743211 1223222 233457889995554444332 34678999998763 2233333333
Q ss_pred ce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC--EEEEEEecCCeeEEEEEEc
Q 006375 221 GV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRL 297 (648)
Q Consensus 221 ~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~ 297 (648)
.+ ...|+|++..++++...+ ..|.+.|+.........+... ...+..+.+.++ .+++....++ .+.+|++
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~d----g~v~vwd~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~~l~s~~~d~--~i~iwd~ 351 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSAD----KTVALWDLRNLKLKLHSFESH-KDEIFQVQWSPHNETILASSGTDR--RLHVWDL 351 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETT----SEEEEEETTCTTSCSEEEECC-SSCEEEEEECSSCTTEEEEEETTS--CCEEEEG
T ss_pred CeEEEEeCCCCCCEEEEEeCC----CeEEEEeCCCCCCCeEEeecC-CCCEEEEEECCCCCCEEEEEeCCC--cEEEEeC
Confidence 33 346999998766665542 468888887533222233222 223566666654 4666666554 5777888
Q ss_pred CC
Q 006375 298 PA 299 (648)
Q Consensus 298 ~~ 299 (648)
..
T Consensus 352 ~~ 353 (430)
T 2xyi_A 352 SK 353 (430)
T ss_dssp GG
T ss_pred CC
Confidence 74
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00021 Score=74.91 Aligned_cols=199 Identities=12% Similarity=0.150 Sum_probs=115.3
Q ss_pred EEeeEEeCCCCC-EEEEEEeCCCCeEEEEEEEECCCCCee------eccc---cCccceeEEecCC-eEEEEEeCCCCCC
Q 006375 82 SVGCFQVSPDNK-LVAYAEDTKGDEIYTVYVIDIETGTPV------GKPL---VGVTASVEWAGNE-ALVYITMDEILRP 150 (648)
Q Consensus 82 ~~~~~~~SPDG~-~la~~~~~~G~e~~~l~v~dl~~g~~~------~~~~---~~~~~~~~WspDg-~l~y~~~~~~~~~ 150 (648)
.+..+.|+|+++ +|+. ...+| .|+++|+.++... .... ......++|+|++ .++++... .
T Consensus 183 ~v~~l~~~~~~~~~l~s-~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~----d 253 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLS-ASDDH----TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD----D 253 (430)
T ss_dssp CCCCEEECTTSTTEEEE-ECTTS----CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET----T
T ss_pred CeEEEEeCCCCCCeEEE-EeCCC----eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC----C
Confidence 346789999999 5554 44444 6999999874321 0111 1224569999976 77666543 2
Q ss_pred ceEEEEECCCCCC-CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeecccc-eeeeEe
Q 006375 151 DKAWLHKLEADQS-NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRVVG-VDTAAS 227 (648)
Q Consensus 151 ~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~~~-~~~~~s 227 (648)
..|+.+++.++.. .....+... ......+.|+|++++++++... ...|.++|+.+.. ....+...... ....|+
T Consensus 254 g~i~i~d~~~~~~~~~~~~~~~~-~~~v~~i~~~p~~~~~l~tg~~--dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~s 330 (430)
T 2xyi_A 254 QKLMIWDTRNNNTSKPSHTVDAH-TAEVNCLSFNPYSEFILATGSA--DKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 330 (430)
T ss_dssp SEEEEEETTCSCSSSCSEEEECC-SSCEEEEEECSSCTTEEEEEET--TSEEEEEETTCTTSCSEEEECCSSCEEEEEEC
T ss_pred CeEEEEECCCCCCCcceeEeecC-CCCeEEEEeCCCCCCEEEEEeC--CCeEEEEeCCCCCCCeEEeecCCCCEEEEEEC
Confidence 4588899887631 122233222 2334468899999976655433 3568999998743 23334333333 235699
Q ss_pred ecCCEEEEEeccCCCCCcEEEEEeCCCCCc-----------ceeEecCC-CCcccceEEEeCC--EEEEEEecCCeeEEE
Q 006375 228 HRGNHFFITRRSDELFNSELLACPVDNTSE-----------TTVLIPHR-ESVKLQDIQLFID--HLAVYEREGGLQKIT 293 (648)
Q Consensus 228 ~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~--~l~~~~~~~~~~~l~ 293 (648)
|+++.++++...+ ..|.+.|+...+. ...+.... ....+..+.+.++ ++++....++ .+.
T Consensus 331 p~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg--~i~ 404 (430)
T 2xyi_A 331 PHNETILASSGTD----RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN--IMQ 404 (430)
T ss_dssp SSCTTEEEEEETT----SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS--EEE
T ss_pred CCCCCEEEEEeCC----CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC--CEE
Confidence 9998776666543 2455566643111 12222222 2234677777765 3666666555 566
Q ss_pred EEEcC
Q 006375 294 TYRLP 298 (648)
Q Consensus 294 v~~~~ 298 (648)
+|+++
T Consensus 405 iw~~~ 409 (430)
T 2xyi_A 405 VWQMA 409 (430)
T ss_dssp EEEEC
T ss_pred EeEcc
Confidence 66765
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.03 E-value=9.7e-05 Score=75.68 Aligned_cols=194 Identities=12% Similarity=0.065 Sum_probs=99.9
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCC---eee-c-cccCccceeEEecCC-eEEEEEeCCCCCCceEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT---PVG-K-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~---~~~-~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~ 155 (648)
.+..+.|||||++|+.... +| .|++||+.+++ ... . ........++|+||+ .|+....+ ..|..
T Consensus 57 ~v~~~~~s~~~~~l~s~s~-d~----~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i 126 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCSQ-DR----NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA-----RVISV 126 (377)
T ss_dssp CEEEEEECTTTCCEEEEET-TS----SEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS-----SCEEE
T ss_pred eEEEEEEeCCCCEEEEEeC-CC----eEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecC-----CeEEE
Confidence 5678899999999887653 33 68999999887 221 1 122334569999999 66554432 24777
Q ss_pred EECCCCCCC-cEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC--------------cee-Eee--e
Q 006375 156 HKLEADQSN-DICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE--------------ELR-VLT--P 217 (648)
Q Consensus 156 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~--------------~~~-~l~--~ 217 (648)
+++.++... ....+..........+.|+||+++|+..+.+ ..|+++|+.... ... .+. .
T Consensus 127 wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (377)
T 3dwl_C 127 CYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD---RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYP 203 (377)
T ss_dssp CCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS---SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCC
T ss_pred EEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC---CEEEEEEEEecccCCCccccccccccchhhhhhccc
Confidence 777765310 1223333123445578999999988765443 447777764321 001 111 1
Q ss_pred cccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCc----ceeEecCCCCcccceEEEeCCE-EEEEEecCCeeE
Q 006375 218 RVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSE----TTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQK 291 (648)
Q Consensus 218 ~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~ 291 (648)
....+ ...|+|+|+.|+..+.. ..|...|+.+... ...+..+.. .+..+.+..+. +++....+ .
T Consensus 204 ~~~~v~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~---~ 273 (377)
T 3dwl_C 204 SGGWVHAVGFSPSGNALAYAGHD-----SSVTIAYPSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNY---S 273 (377)
T ss_dssp CSSSEEEEEECTTSSCEEEEETT-----TEEC-CEECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSS---S
T ss_pred CCceEEEEEECCCCCEEEEEeCC-----CcEEEEECCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCC---c
Confidence 11112 24589999977766543 3566677665333 111333322 35566665543 33333332 2
Q ss_pred EEEEEcC
Q 006375 292 ITTYRLP 298 (648)
Q Consensus 292 l~v~~~~ 298 (648)
+.++...
T Consensus 274 ~~~~~~~ 280 (377)
T 3dwl_C 274 PILLQGN 280 (377)
T ss_dssp EEEECCC
T ss_pred EEEEEeC
Confidence 3455555
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0017 Score=66.59 Aligned_cols=199 Identities=12% Similarity=0.105 Sum_probs=102.2
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc-cCccceeEEecCC-eEEEEEeCCC-----------
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNE-ALVYITMDEI----------- 147 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~WspDg-~l~y~~~~~~----------- 147 (648)
.+..+.|||||++||-... +| +|+|||+.+++.... .. ......++|+||| .|+....+..
T Consensus 68 ~V~~~~~sp~~~~l~s~s~-D~----~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~ 142 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQ-DG----RLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD 142 (380)
T ss_dssp CEEEEEECTTSSCEEEEET-TS----EEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS
T ss_pred EEEEEEEcCCCCEEEEEeC-CC----eEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc
Confidence 4678899999999875543 34 799999998876532 11 1123458899998 5543221110
Q ss_pred ----------------------------------CCCceEEEEECCCCCCCcEEEEee----cCCCeEEEEEeCC-CCcE
Q 006375 148 ----------------------------------LRPDKAWLHKLEADQSNDICLYHE----KDDIYSLGLQASE-SKKF 188 (648)
Q Consensus 148 ----------------------------------~~~~~l~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~s~-Dg~~ 188 (648)
.....|..+++.++ +....+.. ........+.+++ ++..
T Consensus 143 ~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 220 (380)
T 3iz6_a 143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG--QRISIFGSEFPSGHTADVLSLSINSLNANM 220 (380)
T ss_dssp CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC--CEEEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC--cEEEEeecccCCCCccCeEEEEeecCCCCE
Confidence 00112344444443 11222211 1112233455655 6666
Q ss_pred EEEEEccccccEEEEEECCCC-CceeEeeecccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCC
Q 006375 189 LFIASESKITRFVFYLDVSKP-EELRVLTPRVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE 266 (648)
Q Consensus 189 l~~~~~~~~~~~l~~~dl~~~-~~~~~l~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (648)
++..+. +..|.++|+... .....+......+ ...|+|+|..|+..+.+ ..|.+.|+.+..... .+....
T Consensus 221 l~sgs~---D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D-----~~i~lwd~~~~~~~~-~~~~~~ 291 (380)
T 3iz6_a 221 FISGSC---DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD-----GTCRLFDMRTGHQLQ-VYNREP 291 (380)
T ss_dssp EEEEET---TSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS-----SCEEEEETTTTEEEE-EECCCC
T ss_pred EEEEEC---CCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC-----CeEEEEECCCCcEEE-Eecccc
Confidence 553332 345788898743 2233343333333 35699999876554442 357777887632222 222111
Q ss_pred C------cccceEEEeC--CEEEEEEecCCeeEEEEEEcCC
Q 006375 267 S------VKLQDIQLFI--DHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 267 ~------~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
. ..+..+.+.. +.++ ....++ .+.+|++..
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~-~g~~dg--~i~vwd~~~ 329 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLF-AGYSNG--DCYVWDTLL 329 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEE-EECTTS--CEEEEETTT
T ss_pred cccccccCceEEEEECCCCCEEE-EEECCC--CEEEEECCC
Confidence 1 1134455544 4443 333443 577888763
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0013 Score=67.78 Aligned_cols=171 Identities=12% Similarity=0.153 Sum_probs=94.8
Q ss_pred CcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-ccc----CccceeEEecCCeEEEEEeC--------
Q 006375 79 GFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV----GVTASVEWAGNEALVYITMD-------- 145 (648)
Q Consensus 79 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~----~~~~~~~WspDg~l~y~~~~-------- 145 (648)
|...-..+..+|||=+|....+..|+....|.++|.+|++.+.. ... .....+.|+||+.++|++.-
T Consensus 136 g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~ 215 (462)
T 2ece_A 136 GYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIED 215 (462)
T ss_dssp CEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTT
T ss_pred CCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccc
Confidence 33455567899999333333444455567899999999987642 111 22345889999965566530
Q ss_pred ---CC----CCCceEEEEECCCCCCCcEEEEeecCC-CeE--EEEEeCCCCcEEEEEEc---cccccEEEEEECCCCC-c
Q 006375 146 ---EI----LRPDKAWLHKLEADQSNDICLYHEKDD-IYS--LGLQASESKKFLFIASE---SKITRFVFYLDVSKPE-E 211 (648)
Q Consensus 146 ---~~----~~~~~l~~~~l~~~~~~~~~~~~~~~~-~~~--~~~~~s~Dg~~l~~~~~---~~~~~~l~~~dl~~~~-~ 211 (648)
.. ....+|..+++.+. +....+..... ..- +.+.++|||+++++... ....+.|+++..+.++ .
T Consensus 216 g~~~~~~~~~~~d~V~v~D~~~~--k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~ 293 (462)
T 2ece_A 216 GLKLEHLKDRYGNRIHFWDLRKR--KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN 293 (462)
T ss_dssp CCCTTTHHHHSCCEEEEEETTTT--EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE
T ss_pred ccchhhhhhccCCEEEEEECCCC--cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee
Confidence 00 23577999999875 21222222111 122 22345999999988654 1233566554443343 1
Q ss_pred -eeEe--eec-----------------ccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCC
Q 006375 212 -LRVL--TPR-----------------VVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNT 255 (648)
Q Consensus 212 -~~~l--~~~-----------------~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~ 255 (648)
.+.+ ... .......+|+||++||+. |+. . ..|.++|+..+
T Consensus 294 ~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVS-nrg-~--d~VavfdV~d~ 353 (462)
T 2ece_A 294 AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLS-LWG-I--GEVRQYDISNP 353 (462)
T ss_dssp EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEE-ETT-T--TEEEEEECSST
T ss_pred EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEE-eCC-C--CEEEEEEecCC
Confidence 1111 000 011234599999987655 542 2 36777777543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0053 Score=61.84 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=90.0
Q ss_pred EEEeeEEeCCC---CCEEEEEEeCCCCeEEEEEEEECCC-CCeeeccc---cCccceeEEecCC-eEEEEEeCCCCCCce
Q 006375 81 YSVGCFQVSPD---NKLVAYAEDTKGDEIYTVYVIDIET-GTPVGKPL---VGVTASVEWAGNE-ALVYITMDEILRPDK 152 (648)
Q Consensus 81 ~~~~~~~~SPD---G~~la~~~~~~G~e~~~l~v~dl~~-g~~~~~~~---~~~~~~~~WspDg-~l~y~~~~~~~~~~~ 152 (648)
-.+..+.|||| |++||.... +| .|++||+.+ +......+ .+....++|+||+ .|+ +... ...
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~----dg~ 109 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSW-AN----DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF-TASC----DKT 109 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEET-TS----EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE-EEET----TSE
T ss_pred CceEEEEEcCCCCCceEEEEECC-CC----cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE-EEcC----CCc
Confidence 35778899999 588776543 34 689999987 54432222 2334569999999 555 4432 235
Q ss_pred EEEEECCCCCCCcEEEEeecCCCeEEEEEe--CCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecC
Q 006375 153 AWLHKLEADQSNDICLYHEKDDIYSLGLQA--SESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRG 230 (648)
Q Consensus 153 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg 230 (648)
|..+++.++ +..... .. ......+.| ++++++|+..+. +..|+++|+.+++....+.... ....+...+
T Consensus 110 v~iwd~~~~--~~~~~~-~~-~~~v~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~ 180 (368)
T 3mmy_A 110 AKMWDLSSN--QAIQIA-QH-DAPVKTIHWIKAPNYSCVMTGSW---DKTLKFWDTRSSNPMMVLQLPE--RCYCADVIY 180 (368)
T ss_dssp EEEEETTTT--EEEEEE-EC-SSCEEEEEEEECSSCEEEEEEET---TSEEEEECSSCSSCSEEEECSS--CEEEEEEET
T ss_pred EEEEEcCCC--Cceeec-cc-cCceEEEEEEeCCCCCEEEEccC---CCcEEEEECCCCcEEEEEecCC--CceEEEecC
Confidence 888898876 222222 22 233446677 999988875443 3569999998876223332221 223344455
Q ss_pred CEEEEEeccCCCCCcEEEEEeCCC
Q 006375 231 NHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 231 ~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
..++..+.. ..+..+++..
T Consensus 181 ~~~~~~~~~-----~~i~~~~~~~ 199 (368)
T 3mmy_A 181 PMAVVATAE-----RGLIVYQLEN 199 (368)
T ss_dssp TEEEEEEGG-----GCEEEEECSS
T ss_pred CeeEEEeCC-----CcEEEEEecc
Confidence 555555543 2466666654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0053 Score=60.53 Aligned_cols=201 Identities=9% Similarity=0.016 Sum_probs=109.2
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
..+..+.|||||++||-... +| .|++||+++++.+............+++++.++.+.... ..+......+
T Consensus 68 ~~V~~v~~~~~~~~l~sgs~-Dg----~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~----~~~~~~~~~~ 138 (318)
T 4ggc_A 68 EYISSVAWIKEGNYLAVGTS-SA----EVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRS----GHIHHHDVRV 138 (318)
T ss_dssp CCEEEEEECTTSSEEEEEET-TS----EEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETT----SEEEEEETTS
T ss_pred CeEEEEEECCCCCEEEEEEC-CC----cEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecC----CceEeeecCC
Confidence 35778899999999986543 33 799999999987643222222235567777444444322 2355555555
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEe--ee-cccce-eeeEeecCCEEEE
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVL--TP-RVVGV-DTAASHRGNHFFI 235 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l--~~-~~~~~-~~~~s~dg~~l~~ 235 (648)
.. .....+.. .........++++|++|+..+. ...|.++|+.+++ ....+ .. ....+ ...+++++..++.
T Consensus 139 ~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 213 (318)
T 4ggc_A 139 AE-HHVATLSG-HSQEVCGLRWAPDGRHLASGGN---DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 213 (318)
T ss_dssp SS-CEEEEEEC-CSSCEEEEEECTTSSEEEEEET---TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEE
T ss_pred Cc-eeEEEEcC-ccCceEEEEEcCCCCEEEEEec---CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEE
Confidence 42 22222322 2334446788999998875433 3457888988765 11111 11 11122 2347777776665
Q ss_pred EeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 236 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
.... .....|...+........ ............+...++.+++... .....+.++++..
T Consensus 214 ~~~~--~~~~~i~lwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~sg-~~d~~i~iwd~~~ 273 (318)
T 4ggc_A 214 TGGG--TSDRHIRIWNVCSGACLS-AVDAHSQVCSILWSPHYKELISGHG-FAQNQLVIWKYPT 273 (318)
T ss_dssp EEEC--TTTCEEEEEETTTCCEEE-EEECSSCEEEEEEETTTTEEEEEEC-TTTCCEEEEETTT
T ss_pred EEec--CCCCEEEEEecccccccc-cccceeeeeeeeecccccceEEEEE-cCCCEEEEEECCC
Confidence 5443 233456666766532222 3333333333334444556655432 1234688888874
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0031 Score=62.14 Aligned_cols=197 Identities=13% Similarity=0.110 Sum_probs=105.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-ecccc---CccceeEEecC--CeEEEEEeCCCCCCceEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GKPLV---GVTASVEWAGN--EALVYITMDEILRPDKAWL 155 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-~~~~~---~~~~~~~WspD--g~l~y~~~~~~~~~~~l~~ 155 (648)
.+..+.|||||++||-... +| +|+|+|++++... ...+. +....++|+|+ |.++++...+ ..|.+
T Consensus 11 ~V~~~~~s~~g~~las~s~-D~----~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D----~~v~i 81 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSS-DK----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD----GKVMI 81 (297)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----CEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT----TEEEE
T ss_pred ceEEEEECCCCCEEEEEeC-CC----EEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC----CEEEE
Confidence 3567889999999986653 33 6899998754321 11222 23445899874 6555555432 34778
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCC--CcEEEEEEccccccEEEEEECCCCC--ceeEeeecccce-eeeEeec-
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASES--KKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVGV-DTAASHR- 229 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~D--g~~l~~~~~~~~~~~l~~~dl~~~~--~~~~l~~~~~~~-~~~~s~d- 229 (648)
+++.++.......+... ......+.|+|+ |+.|+..+. +..|.++|+.++. ....+......+ ...|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g~~l~s~s~---d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPMLLVASS---DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEBSSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEET---TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred EEcCCCceEEEEEeecC-CCceeEEEeCcCCCCcEEEEEEC---CCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence 88876532223333322 233457889998 777765433 3567888887653 122222222222 2347776
Q ss_pred ------------CCEEEEEeccCCCCCcEEEEEeCCCCCcc---eeEecCCCCcccceEEEeCC----EEEEEEecCCee
Q 006375 230 ------------GNHFFITRRSDELFNSELLACPVDNTSET---TVLIPHRESVKLQDIQLFID----HLAVYEREGGLQ 290 (648)
Q Consensus 230 ------------g~~l~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 290 (648)
++.|+..+.. ..|...|+...... ...+... ...+..+.+.++ .+++....++
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D-----~~v~lwd~~~~~~~~~~~~~l~~H-~~~V~~v~~sp~~~~~~~las~s~D~-- 229 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYMASVSQDR-- 229 (297)
T ss_dssp ------------CCEEEEEETT-----SCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEETTS--
T ss_pred ccccccCCCCCCcceEEEEcCC-----CcEEEEEEcCCCceEEEEEEecCC-CCceEEEEECCCCCCceEEEEEECCC--
Confidence 3444333332 23444454432211 1122222 223566666654 5555666655
Q ss_pred EEEEEEcCC
Q 006375 291 KITTYRLPA 299 (648)
Q Consensus 291 ~l~v~~~~~ 299 (648)
.+.+++++.
T Consensus 230 ~v~iWd~~~ 238 (297)
T 2pm7_B 230 TCIIWTQDN 238 (297)
T ss_dssp CEEEEEESS
T ss_pred cEEEEEeCC
Confidence 466777763
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0046 Score=62.32 Aligned_cols=234 Identities=9% Similarity=0.009 Sum_probs=121.0
Q ss_pred EeeEEe-----CC-CCCEEEEEEeCCCCeEEEEEEEECCCCCee------ecccc---CccceeEEecCCeEEEEEeCCC
Q 006375 83 VGCFQV-----SP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPV------GKPLV---GVTASVEWAGNEALVYITMDEI 147 (648)
Q Consensus 83 ~~~~~~-----SP-DG~~la~~~~~~G~e~~~l~v~dl~~g~~~------~~~~~---~~~~~~~WspDg~l~y~~~~~~ 147 (648)
+..+.| +| ||++||-... +| +|++||+.+++.. ...+. .....++|+||+.++++...
T Consensus 24 V~~~~~~~s~~~~~d~~~l~sgs~-D~----~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~-- 96 (343)
T 2xzm_R 24 VTSIVAGFSQKENEDSPVLISGSR-DK----TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW-- 96 (343)
T ss_dssp EEEEEECCCSSTTCCCCEEEEEET-TS----CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET--
T ss_pred hhheeeEEEeecCCCCCEEEEEcC-CC----EEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC--
Confidence 456667 66 9998875543 33 6889998764321 11121 22456899999954455542
Q ss_pred CCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee---cccce-e
Q 006375 148 LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP---RVVGV-D 223 (648)
Q Consensus 148 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~---~~~~~-~ 223 (648)
...|.++++.++ +....+..+ ......+.|+|||++|+..+. +..|.++|+.+.. ...+.. ....+ .
T Consensus 97 --D~~v~lwd~~~~--~~~~~~~~h-~~~v~~v~~sp~~~~l~s~~~---d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 97 --DKTLRLWDLRTG--TTYKRFVGH-QSEVYSVAFSPDNRQILSAGA---EREIKLWNILGEC-KFSSAEKENHSDWVSC 167 (343)
T ss_dssp --TSEEEEEETTSS--CEEEEEECC-CSCEEEEEECSSTTEEEEEET---TSCEEEEESSSCE-EEECCTTTSCSSCEEE
T ss_pred --CCcEEEEECCCC--cEEEEEcCC-CCcEEEEEECCCCCEEEEEcC---CCEEEEEeccCCc-eeeeecccCCCceeee
Confidence 235888898876 233334333 233457899999999875443 3567888886432 222211 11112 2
Q ss_pred eeEeecC----------CEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE-EEEEEecCCeeEE
Q 006375 224 TAASHRG----------NHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKI 292 (648)
Q Consensus 224 ~~~s~dg----------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l 292 (648)
..++|++ ..|+..+.. ..|...|... .....+..+.. .+..+.+.++. .++....++ .+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~-~~~~~~~~h~~--~v~~~~~s~~g~~l~sgs~dg--~v 237 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWD-----GRLKVWNTNF-QIRYTFKAHES--NVNHLSISPNGKYIATGGKDK--KL 237 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETT-----SEEEEEETTT-EEEEEEECCSS--CEEEEEECTTSSEEEEEETTC--EE
T ss_pred eeeccccccccccCCCCCEEEEEcCC-----CEEEEEcCCC-ceeEEEcCccc--cceEEEECCCCCEEEEEcCCC--eE
Confidence 3467766 444333332 3566667432 21111323332 35566665542 333444444 57
Q ss_pred EEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 293 TTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 293 ~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
.+|++...+... ....... .+..+.+++++..+ ..++. ..+..+++.+++
T Consensus 238 ~iwd~~~~~~~~------~~~~~~~---~v~~v~~sp~~~~l--a~~~d---~~v~iw~~~~~~ 287 (343)
T 2xzm_R 238 LIWDILNLTYPQ------REFDAGS---TINQIAFNPKLQWV--AVGTD---QGVKIFNLMTQS 287 (343)
T ss_dssp EEEESSCCSSCS------EEEECSS---CEEEEEECSSSCEE--EEEES---SCEEEEESSSCC
T ss_pred EEEECCCCcccc------eeecCCC---cEEEEEECCCCCEE--EEECC---CCEEEEEeCCCC
Confidence 788884222211 1111111 23334455666533 23322 347778877655
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0016 Score=65.01 Aligned_cols=194 Identities=9% Similarity=0.068 Sum_probs=105.4
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee----ecccc---CccceeEEecCCeEEEEEeCCCCCCceEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV----GKPLV---GVTASVEWAGNEALVYITMDEILRPDKAW 154 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~----~~~~~---~~~~~~~WspDg~l~y~~~~~~~~~~~l~ 154 (648)
.+..+.|||++..+.++...+| +|++|++.+.... ...+. .....++|+|||.++++... ...|.
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~----~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~----D~~v~ 90 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDK----TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW----DKTLR 90 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTS----EEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred eEEEEEccCCCccEEEEecCCc----cEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC----CCEEE
Confidence 4567889998743444544444 7888887653211 11122 22445899999944455442 23588
Q ss_pred EEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEeec----
Q 006375 155 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHR---- 229 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~d---- 229 (648)
++++.++ +....+..+. .....+.++|+++.|+..+. +..|.++|+.+.. ...+......+. ..++|.
T Consensus 91 ~wd~~~~--~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~---D~~i~vwd~~~~~-~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 91 LWDVATG--ETYQRFVGHK-SDVMSVDIDKKASMIISGSR---DKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp EEETTTT--EEEEEEECCS-SCEEEEEECTTSCEEEEEET---TSCEEEEETTSCE-EEEECCCSSCEEEEEECCC----
T ss_pred EEECCCC--CeeEEEccCC-CcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCe-EEEEeccCCcEEEEEEccCCCCC
Confidence 8898876 3333343332 33457789999998875443 2457777887653 443433322222 235553
Q ss_pred --CCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcCC
Q 006375 230 --GNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 230 --g~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~ 299 (648)
+..|+..+.. ..|...|+........+..+.. .+..+.+.++. +++....++ .+.+|++..
T Consensus 164 ~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~sp~g~~l~s~~~dg--~i~iwd~~~ 227 (319)
T 3frx_A 164 DDSVTIISAGND-----KMVKAWNLNQFQIEADFIGHNS--NINTLTASPDGTLIASAGKDG--EIMLWNLAA 227 (319)
T ss_dssp --CCEEEEEETT-----SCEEEEETTTTEEEEEECCCCS--CEEEEEECTTSSEEEEEETTC--EEEEEETTT
T ss_pred CCccEEEEEeCC-----CEEEEEECCcchhheeecCCCC--cEEEEEEcCCCCEEEEEeCCC--eEEEEECCC
Confidence 3334333332 3577778765322221333332 35566665542 334444444 577888873
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00037 Score=72.29 Aligned_cols=204 Identities=13% Similarity=0.126 Sum_probs=106.4
Q ss_pred eEEeCCCCCEEEEEEeC-----CCCeEEEEEEEECCCCCeeec-ccc--------CccceeEEecCC-eEEEEEeCCCCC
Q 006375 85 CFQVSPDNKLVAYAEDT-----KGDEIYTVYVIDIETGTPVGK-PLV--------GVTASVEWAGNE-ALVYITMDEILR 149 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~-----~G~e~~~l~v~dl~~g~~~~~-~~~--------~~~~~~~WspDg-~l~y~~~~~~~~ 149 (648)
++.+||||++|..+... .|.....|.++|+++++.+.. .++ ..-..+.++||| ++|..... .
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~---~ 198 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS---P 198 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS---S
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC---C
Confidence 68999999998766431 122345899999999987642 222 123459999999 65544321 1
Q ss_pred CceEEEEECCCCCCCcEEE-------EeecCCCeEEEEEeCCCCcEEEEEEccc--------------------------
Q 006375 150 PDKAWLHKLEADQSNDICL-------YHEKDDIYSLGLQASESKKFLFIASESK-------------------------- 196 (648)
Q Consensus 150 ~~~l~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~s~Dg~~l~~~~~~~-------------------------- 196 (648)
...|..+|+.+........ +.... .. .+..++||+.+++.....
T Consensus 199 ~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~-~~--~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~d 275 (426)
T 3c75_H 199 APAVGVVDLEGKTFDRMLDVPDCYHIFPASP-TV--FYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLR 275 (426)
T ss_dssp SCEEEEEETTTTEEEEEEECCSEEEEEEEET-TE--EEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTT
T ss_pred CCeEEEEECCCCeEEEEEEcCCceeeccCCC-cE--EEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCC
Confidence 3457777777652111110 00000 00 023344554444432100
Q ss_pred --------cccEEEEEECCCCCceeEeee-------------cccc-eeeeEeecCCEEEEEeccCC-----CCCcEEEE
Q 006375 197 --------ITRFVFYLDVSKPEELRVLTP-------------RVVG-VDTAASHRGNHFFITRRSDE-----LFNSELLA 249 (648)
Q Consensus 197 --------~~~~l~~~dl~~~~~~~~l~~-------------~~~~-~~~~~s~dg~~l~~~~~~~~-----~~~~~l~~ 249 (648)
....++++|+.+.. .+.+.+ ...+ ....+++||+++|+.....+ .+...|.+
T Consensus 276 g~~~~~~s~~g~V~ViD~~~~~-~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsV 354 (426)
T 3c75_H 276 SGRLVWPTYTGKIFQADLTAEG-ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVV 354 (426)
T ss_dssp TCEEEEEBTTSEEEEEEECSSC-EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCEEEEEeCCCcEEEEeccCCc-eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEE
Confidence 12357888876654 222111 0011 11358899998887643211 12347999
Q ss_pred EeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcCC
Q 006375 250 CPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
+|..+..... .++-.. ...++.++. +.+++..+ .....+.+++..+
T Consensus 355 ID~~T~kvv~-~I~vg~--~P~gia~spDg~~~lyv~n-~~s~~VsVID~~t 402 (426)
T 3c75_H 355 LNAETGERIN-KIELGH--EIDSINVSQDAEPLLYALS-AGTQTLHIYDAAT 402 (426)
T ss_dssp EETTTCCEEE-EEEEEE--EECEEEECCSSSCEEEEEE-TTTTEEEEEETTT
T ss_pred EECCCCeEEE-EEECCC--CcCeEEEccCCCEEEEEEc-CCCCeEEEEECCC
Confidence 9998743322 222211 244455554 42333433 2345788999874
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0023 Score=63.21 Aligned_cols=185 Identities=10% Similarity=0.002 Sum_probs=103.7
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc----c-CccceeEEecCCeEEEEEeCCC-------CC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL----V-GVTASVEWAGNEALVYITMDEI-------LR 149 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~----~-~~~~~~~WspDg~l~y~~~~~~-------~~ 149 (648)
+..+.++|||++++- . . ..|+++|+++++.... .. . .....+.++|||.|++...... ..
T Consensus 56 ~~~i~~~~dG~l~v~-~--~----~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~ 128 (297)
T 3g4e_A 56 VSSVALRQSGGYVAT-I--G----TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERH 128 (297)
T ss_dssp EEEEEEBTTSSEEEE-E--T----TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTT
T ss_pred eEEEEECCCCCEEEE-E--C----CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCC
Confidence 567889999995443 2 1 2689999998875432 11 1 1234588999998777654321 12
Q ss_pred CceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEEC--CCCC-c-eeEeeec--ccc-e
Q 006375 150 PDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDV--SKPE-E-LRVLTPR--VVG-V 222 (648)
Q Consensus 150 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl--~~~~-~-~~~l~~~--~~~-~ 222 (648)
...||+++.+.. ...+.... ....++.|+|||+.|++... ....|+++++ .++. . .+.+... ..+ .
T Consensus 129 ~~~l~~~d~~g~---~~~~~~~~--~~pngi~~spdg~~lyv~~~--~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p 201 (297)
T 3g4e_A 129 QGALYSLFPDHH---VKKYFDQV--DISNGLDWSLDHKIFYYIDS--LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIP 201 (297)
T ss_dssp CEEEEEECTTSC---EEEEEEEE--SBEEEEEECTTSCEEEEEEG--GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEE
T ss_pred CcEEEEEECCCC---EEEEeecc--ccccceEEcCCCCEEEEecC--CCCcEEEEeccCCCCcccCcEEEEECCCCCCCC
Confidence 346888876432 22233221 23347889999999877543 3467888876 4554 1 1222211 111 1
Q ss_pred -eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEe---CCEEEEEEecCC
Q 006375 223 -DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF---IDHLAVYEREGG 288 (648)
Q Consensus 223 -~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~ 288 (648)
...++++| .||+..... .+|.+++.++..... .++.. ...+..+.+. .+.|++.....+
T Consensus 202 ~g~~~d~~G-~lwva~~~~----~~v~~~d~~tG~~~~-~i~~p-~~~~t~~~f~g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 202 DGMCIDAEG-KLWVACYNG----GRVIRLDPVTGKRLQ-TVKLP-VDKTTSCCFGGKNYSEMYVTCARDG 264 (297)
T ss_dssp EEEEEBTTS-CEEEEEETT----TEEEEECTTTCCEEE-EEECS-SSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred CeeEECCCC-CEEEEEcCC----CEEEEEcCCCceEEE-EEECC-CCCceEEEEeCCCCCEEEEEcCCcC
Confidence 13477777 477776542 479999987423222 22222 1124444444 246776666544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0014 Score=73.41 Aligned_cols=237 Identities=13% Similarity=0.067 Sum_probs=127.3
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee----eccc---cCccceeEEecCCeEEEEEeCCCCCCceEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV----GKPL---VGVTASVEWAGNEALVYITMDEILRPDKAW 154 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~----~~~~---~~~~~~~~WspDg~l~y~~~~~~~~~~~l~ 154 (648)
.+..+.++|++..+.++...+| +|++|++.++... ...+ ......++|+|||.++.+... ...|.
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~----~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~----Dg~v~ 455 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDK----SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW----DGELR 455 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTS----EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred eeEEEEecCCCCCEEEEEeCCC----cEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC----CCcEE
Confidence 4567889998755555555555 7899999764321 1111 122456999999944455442 23588
Q ss_pred EEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc----cce-eeeEeec
Q 006375 155 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV----VGV-DTAASHR 229 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~----~~~-~~~~s~d 229 (648)
++++.++ .....+..+. .....+.|+||+++|+..+. +..|.++|+.+.. ...+.... ..+ ...|+|+
T Consensus 456 vwd~~~~--~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~---D~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 456 LWDLAAG--VSTRRFVGHT-KDVLSVAFSLDNRQIVSASR---DRTIKLWNTLGEC-KYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EEETTTT--EEEEEEECCS-SCEEEEEECTTSSCEEEEET---TSCEEEECTTSCE-EEEECSSTTSCSSCEEEEEECSC
T ss_pred EEECCCC--cceeEEeCCC-CCEEEEEEeCCCCEEEEEeC---CCEEEEEECCCCc-ceeeccCCCCCCCcEEEEEEeCC
Confidence 8898876 2333443332 33457889999998875443 3457777876543 22222211 112 2358888
Q ss_pred CCE-EEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCCCCCccccc
Q 006375 230 GNH-FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSL 307 (648)
Q Consensus 230 g~~-l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~l 307 (648)
+.. ++++...+ ..|.+.|+........+..+.. .+..+.+.++ .+++....++ .+.+|++.. +..+..+
T Consensus 529 ~~~~~l~s~s~d----~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~sg~~Dg--~i~iwd~~~-~~~~~~~ 599 (694)
T 3dm0_A 529 TLQPTIVSASWD----KTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKDG--VVLLWDLAE-GKKLYSL 599 (694)
T ss_dssp SSSCEEEEEETT----SCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTS--BCEEEETTT-TEEEECC
T ss_pred CCcceEEEEeCC----CeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCC--eEEEEECCC-CceEEEe
Confidence 743 33333322 3577778866332222332332 3556666654 2344444554 567778863 2222111
Q ss_pred CCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 308 QGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 308 ~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
.... .+..+.+++++..+ +. ++. ..+..+|+.+++
T Consensus 600 ------~~~~---~v~~~~~sp~~~~l-~~-~~~---~~i~iwd~~~~~ 634 (694)
T 3dm0_A 600 ------EANS---VIHALCFSPNRYWL-CA-ATE---HGIKIWDLESKS 634 (694)
T ss_dssp ------BCSS---CEEEEEECSSSSEE-EE-EET---TEEEEEETTTTE
T ss_pred ------cCCC---cEEEEEEcCCCcEE-EE-EcC---CCEEEEECCCCC
Confidence 1111 13233444555433 22 222 358899998887
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0013 Score=68.96 Aligned_cols=161 Identities=12% Similarity=0.071 Sum_probs=92.4
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCC--------Cee--eccc---cCccceeEEecCC-eEEEEEeCCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETG--------TPV--GKPL---VGVTASVEWAGNE-ALVYITMDEI 147 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g--------~~~--~~~~---~~~~~~~~WspDg-~l~y~~~~~~ 147 (648)
.+..+.|||||++||..... |+....|+|||+.++ +.. .... ......++|+|++ .++.+...+
T Consensus 94 ~v~~l~~spdg~~lav~~~s-gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D- 171 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMS-SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD- 171 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEE-TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT-
T ss_pred cccEEEEcCCCCEEEEEEec-cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC-
Confidence 37789999999999975421 344678999998765 111 1111 2234569999995 665555432
Q ss_pred CCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc--------
Q 006375 148 LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV-------- 219 (648)
Q Consensus 148 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~-------- 219 (648)
..|..+++.++ . ..............+.|+|||++|+..+. +..|.++|+. ++....+....
T Consensus 172 ---g~v~iwD~~~~--~-~~~~~~~~~~~v~~v~wspdg~~lasgs~---dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~ 241 (434)
T 2oit_A 172 ---GSIAVLQVTET--V-KVCATLPSTVAVTSVCWSPKGKQLAVGKQ---NGTVVQYLPT-LQEKKVIPCPPFYESDHPV 241 (434)
T ss_dssp ---SCEEEEEESSS--E-EEEEEECGGGCEEEEEECTTSSCEEEEET---TSCEEEECTT-CCEEEEECCCTTCCTTSCE
T ss_pred ---CeEEEEEcCCC--c-ceeeccCCCCceeEEEEcCCCCEEEEEcC---CCcEEEEccC-CcccccccCCcccCCCCce
Confidence 34788888765 1 12111111223457899999999986553 3458888887 33122222111
Q ss_pred cceeeeEeecCCEEEEEeccCCC--CCcEEEEEeCCC
Q 006375 220 VGVDTAASHRGNHFFITRRSDEL--FNSELLACPVDN 254 (648)
Q Consensus 220 ~~~~~~~s~dg~~l~~~~~~~~~--~~~~l~~~~~~~ 254 (648)
......|++++..++..++.++. ....+..+++..
T Consensus 242 ~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 242 RVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred eEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 11234588877655444443221 123466666654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.011 Score=60.75 Aligned_cols=142 Identities=13% Similarity=0.113 Sum_probs=82.1
Q ss_pred C--CCCCEEEEEEeCCCCeEEEEEEEECCCCC--ee-ecccc--------Cc--cceeEEecCCeEEEEE--eCCCCCCc
Q 006375 89 S--PDNKLVAYAEDTKGDEIYTVYVIDIETGT--PV-GKPLV--------GV--TASVEWAGNEALVYIT--MDEILRPD 151 (648)
Q Consensus 89 S--PDG~~la~~~~~~G~e~~~l~v~dl~~g~--~~-~~~~~--------~~--~~~~~WspDg~l~y~~--~~~~~~~~ 151 (648)
| +|+++|....-.+ .+|+|+|+++.. +. ..+++ +. -..+.-+||| |+.+. ....+.+.
T Consensus 90 ~~~~~r~~l~v~~l~s----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g 164 (462)
T 2ece_A 90 KPNIERRFLIVPGLRS----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPG 164 (462)
T ss_dssp CTTCCSCEEEEEBTTT----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCC
T ss_pred CCCccCCEEEEccCCC----CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCC
Confidence 8 9999887664433 489999998652 22 12231 11 1235678999 44333 33344567
Q ss_pred eEEEEECCCCCCCcEEEEeec-C-CCeEEEEEeCCCCcEEEEEEcc-----------------ccccEEEEEECCCCCce
Q 006375 152 KAWLHKLEADQSNDICLYHEK-D-DIYSLGLQASESKKFLFIASES-----------------KITRFVFYLDVSKPEEL 212 (648)
Q Consensus 152 ~l~~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~s~Dg~~l~~~~~~-----------------~~~~~l~~~dl~~~~~~ 212 (648)
.|..+|..+.. -+...+.. . ..+..++.|+||++.++. ++- .....|.++|+++++..
T Consensus 165 ~v~vlD~~T~~--v~~~~~~~~~~~~~~Yd~~~~p~~~~mvs-S~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 165 GILMLDHYSFE--PLGKWEIDRGDQYLAYDFWWNLPNEVLVS-SEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp EEEEECTTTCC--EEEECCSBCTTCCCCCCEEEETTTTEEEE-CBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred eEEEEECCCCe--EEEEEccCCCCccccceEEECCCCCEEEE-ccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 79999888762 22222211 2 234556789999996654 320 23689999999986522
Q ss_pred eEeeecccc-----eeeeEeecCCEEEEEec
Q 006375 213 RVLTPRVVG-----VDTAASHRGNHFFITRR 238 (648)
Q Consensus 213 ~~l~~~~~~-----~~~~~s~dg~~l~~~~~ 238 (648)
+.+.-...+ ..+.++|+|+++|+...
T Consensus 242 ~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e 272 (462)
T 2ece_A 242 HSLTLGEENRMALELRPLHDPTKLMGFINMV 272 (462)
T ss_dssp EEEESCTTEEEEEEEEECSSTTCCEEEEEEE
T ss_pred eEEecCCCCCccceeEeeECCCCCEEEEEEe
Confidence 223222111 11235999998877655
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00078 Score=76.19 Aligned_cols=197 Identities=13% Similarity=0.114 Sum_probs=109.8
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccc---cCccceeEEecC--CeEEEEEeCCCCCCceEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPL---VGVTASVEWAGN--EALVYITMDEILRPDKAWL 155 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~---~~~~~~~~WspD--g~l~y~~~~~~~~~~~l~~ 155 (648)
.+..+.|||||++||.... +| .|.|||+.++.... ..+ .+....++|+|+ +.++++...+ ..|+.
T Consensus 11 ~V~~l~~s~dg~~latg~~-dg----~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D----g~I~v 81 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSS-DK----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD----GKVLI 81 (753)
T ss_dssp CEEEECCCSSSCCEEEEET-TT----EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT----SCEEE
T ss_pred eeEEEEECCCCCeEEEEEC-CC----cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC----CeEEE
Confidence 4667899999999887643 34 68888887543221 122 223456999988 7444454422 34777
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCC--CcEEEEEEccccccEEEEEECCCCC--ceeEeeecccce-eeeEee--
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASES--KKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVGV-DTAASH-- 228 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~D--g~~l~~~~~~~~~~~l~~~dl~~~~--~~~~l~~~~~~~-~~~~s~-- 228 (648)
+++.++.......+... ......+.|+|+ |+.++..+. +..|.++|+.++. ....+......+ ...|+|
T Consensus 82 wd~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~~l~sgs~---dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPLLLVASS---DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEET---TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred EECCCCcccccccccCC-CCCeEEEEECCCCCCCEEEEEeC---CCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence 77776521122222222 334557889999 888876543 3578889988774 122222222222 234777
Q ss_pred -----------cCCEEEEEeccCCCCCcEEEEEeCCCCCcc-ee--EecCCCCcccceEEEeCC----EEEEEEecCCee
Q 006375 229 -----------RGNHFFITRRSDELFNSELLACPVDNTSET-TV--LIPHRESVKLQDIQLFID----HLAVYEREGGLQ 290 (648)
Q Consensus 229 -----------dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 290 (648)
++..|+..+.. ..|...|+...... .. .+... ...+..+.+.++ ..++....++
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~~~l~s~s~Dg-- 229 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVSQDR-- 229 (753)
T ss_dssp ---------CGGGCCEEEEETT-----SCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEESSS--
T ss_pred cccccccccCCCCCEEEEEECC-----CeEEEEeccCCcccceeeeeecCC-CCcEEEEEeccCCCCCCEEEEEecCC--
Confidence 57766555543 24555665442211 11 22221 223566666654 4455555554
Q ss_pred EEEEEEcCC
Q 006375 291 KITTYRLPA 299 (648)
Q Consensus 291 ~l~v~~~~~ 299 (648)
.+.+|++..
T Consensus 230 ~I~iwd~~~ 238 (753)
T 3jro_A 230 TCIIWTQDN 238 (753)
T ss_dssp CEEEEEESS
T ss_pred EEEEecCCC
Confidence 577778774
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00088 Score=73.34 Aligned_cols=196 Identities=10% Similarity=0.023 Sum_probs=112.6
Q ss_pred EeeEEeCC--CCCEEEEEEeCCCCeEEEEEEEECCCC------C--eeec--cccCccceeEEecCC-eEEEEEeCCCCC
Q 006375 83 VGCFQVSP--DNKLVAYAEDTKGDEIYTVYVIDIETG------T--PVGK--PLVGVTASVEWAGNE-ALVYITMDEILR 149 (648)
Q Consensus 83 ~~~~~~SP--DG~~la~~~~~~G~e~~~l~v~dl~~g------~--~~~~--~~~~~~~~~~WspDg-~l~y~~~~~~~~ 149 (648)
+..+.||| ||++||.... +| .|.+||+.++ + .... ........++|+||| .|+....+ ...
T Consensus 67 v~~~~~sp~~~~~~l~s~~~-dg----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~ 140 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDE-SG----KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG-RDN 140 (615)
T ss_dssp EEEEEECSSTTCCEEEEEET-TS----EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC-SSC
T ss_pred EEEEEECcCCCCCEEEEecC-CC----EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC-CCC
Confidence 77889999 9999987654 34 6889999765 2 2211 112334569999999 66555432 233
Q ss_pred CceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc---ce-eee
Q 006375 150 PDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV---GV-DTA 225 (648)
Q Consensus 150 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~---~~-~~~ 225 (648)
...|+.++ ++ +....+... ......+.|+|+++++++... ....|.++|+.+++....+..... .+ ...
T Consensus 141 ~~~v~~~d--~~--~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 141 FGVFISWD--SG--NSLGEVSGH-SQRINACHLKQSRPMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp SEEEEETT--TC--CEEEECCSC-SSCEEEEEECSSSSCEEEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred ccEEEEEE--CC--CcceeeecC-CccEEEEEECCCCCcEEEEEe--CCCcEEEEeCCCcceeeeecccCCCCceEEEEE
Confidence 34566666 32 222233222 334457889999985555443 236788889887652222332322 23 345
Q ss_pred Eeec-CCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecC---CCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 226 ASHR-GNHFFITRRSDELFNSELLACPVDNTSETTVLIPH---RESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 226 ~s~d-g~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
|+|+ |+.|+..+.. ..|.+.|+....... .+.. .....+..+.+.....++....++ .+.+|++..
T Consensus 214 ~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~--~i~~wd~~~ 283 (615)
T 1pgu_A 214 FSPDSGEFVITVGSD-----RKISCFDGKSGEFLK-YIEDDQEPVQGGIFALSWLDSQKFATVGADA--TIRVWDVTT 283 (615)
T ss_dssp ECSTTCCEEEEEETT-----CCEEEEETTTCCEEE-ECCBTTBCCCSCEEEEEESSSSEEEEEETTS--EEEEEETTT
T ss_pred ECCCCCCEEEEEeCC-----CeEEEEECCCCCEeE-EecccccccCCceEEEEEcCCCEEEEEcCCC--cEEEEECCC
Confidence 9999 8877665543 367888887633222 3311 222235566664223334444443 577888873
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0035 Score=65.44 Aligned_cols=197 Identities=11% Similarity=0.165 Sum_probs=108.3
Q ss_pred EEEeeEEeCC-CCCEEEEEEeCCCCeEEEEEEEECCC---CCeee--c--cccCccceeEEecCCeEEEEEeCCCCCCce
Q 006375 81 YSVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIET---GTPVG--K--PLVGVTASVEWAGNEALVYITMDEILRPDK 152 (648)
Q Consensus 81 ~~~~~~~~SP-DG~~la~~~~~~G~e~~~l~v~dl~~---g~~~~--~--~~~~~~~~~~WspDg~l~y~~~~~~~~~~~ 152 (648)
-.+..+.||| ||++||-... +| .|+|||+.+ +.... . .-......++|+||+.++++...+ ..
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~-dg----~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d----g~ 134 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSD-QG----VIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKD----GQ 134 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEET-TS----EEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETT----SE
T ss_pred CceEEEEECCCCCCEEEEecC-Cc----eEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCC----CE
Confidence 4677889999 9999887653 34 799999876 44221 1 112334569999999433444322 23
Q ss_pred EEEEECC---CCCCCcEEEEee---------c--CCCe--EEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEee
Q 006375 153 AWLHKLE---ADQSNDICLYHE---------K--DDIY--SLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT 216 (648)
Q Consensus 153 l~~~~l~---~~~~~~~~~~~~---------~--~~~~--~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~ 216 (648)
|..+++. ++ +....... + .... .+...+++|+++|+..+. ...|+++|+.+++....+.
T Consensus 135 i~vwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 135 IIVLKVNHYQQE--SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN---LSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET---TSEEEEEETTTCCEEEEEE
T ss_pred EEEEEeccccCC--ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCeeeEEEc
Confidence 5566553 22 11111110 0 1112 222337788988876543 3579999998877223333
Q ss_pred e--cccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEe----CCE-EEEEEecCC
Q 006375 217 P--RVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF----IDH-LAVYEREGG 288 (648)
Q Consensus 217 ~--~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-l~~~~~~~~ 288 (648)
. ....+ ...|+|++..|+..+.. ..|...|+....... .+.......+..+.+. .+. +++....+
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d- 282 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTR-----GIIDIWDIRFNVLIR-SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK- 282 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETT-----SCEEEEETTTTEEEE-EEBCTTCEEEEEEEECTTTCTTEEEEEEESTT-
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCC-----CeEEEEEcCCccEEE-EEecCCCCceEEEEeccccCCCccEEEEEcCC-
Confidence 2 22223 24589998877655543 357778887522222 2221222245555333 344 34444444
Q ss_pred eeEEEEEEcCC
Q 006375 289 LQKITTYRLPA 299 (648)
Q Consensus 289 ~~~l~v~~~~~ 299 (648)
..+.+|++..
T Consensus 283 -g~i~iwd~~~ 292 (437)
T 3gre_A 283 -TFLTIWNFVK 292 (437)
T ss_dssp -EEEEEEETTT
T ss_pred -CcEEEEEcCC
Confidence 3678888863
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0072 Score=59.36 Aligned_cols=233 Identities=13% Similarity=0.054 Sum_probs=122.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec--cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.| |||++|+... .+| .|++||+.+++.... ........++|+||+ .|+....+ ..+..+++
T Consensus 20 ~v~~~~~-~~~~~l~s~~-~dg----~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~~~ 88 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVS-RDG----TVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKD-----TMINGVPL 88 (313)
T ss_dssp CEEEEEE-EETTEEEEEE-TTS----EEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETT-----SCEEEEET
T ss_pred CcEEEEe-cCCCEEEEEE-cCC----cEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCC-----CeEEEEEe
Confidence 4556788 9999987654 334 799999988775532 123335569999999 55544332 23666776
Q ss_pred CCCCCCc-EEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEee-cCCEEEE
Q 006375 159 EADQSND-ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASH-RGNHFFI 235 (648)
Q Consensus 159 ~~~~~~~-~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~-dg~~l~~ 235 (648)
....... ...+... ......+.+ +++.++..+. ...|.++| .++....+......+ ...+.+ +++.|+.
T Consensus 89 ~~~~~~~~~~~~~~~-~~~i~~~~~--~~~~l~~~~~---d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 89 FATSGEDPLYTLIGH-QGNVCSLSF--QDGVVISGSW---DKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp TCCTTSCC-CEECCC-SSCEEEEEE--ETTEEEEEET---TSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred eecCCCCcccchhhc-ccCEEEEEe--cCCEEEEEeC---CCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 6542211 2222222 223334555 6677665433 34577888 222123333332222 234666 7776665
Q ss_pred EeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeec
Q 006375 236 TRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEF 315 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~ 315 (648)
.+.. ..|...|... ....+.......+..+.+.++..++....++ .+.++++.. +..+. .+.
T Consensus 161 ~~~d-----~~i~i~d~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg--~i~i~d~~~-~~~~~------~~~- 222 (313)
T 3odt_A 161 ASAD-----KTIKLWQNDK---VIKTFSGIHNDVVRHLAVVDDGHFISCSNDG--LIKLVDMHT-GDVLR------TYE- 222 (313)
T ss_dssp EETT-----SCEEEEETTE---EEEEECSSCSSCEEEEEEEETTEEEEEETTS--EEEEEETTT-CCEEE------EEE-
T ss_pred EECC-----CCEEEEecCc---eEEEEeccCcccEEEEEEcCCCeEEEccCCC--eEEEEECCc-hhhhh------hhh-
Confidence 5443 3466666322 2222332223345666666553355555554 578888874 22111 111
Q ss_pred CCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 316 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
.....+..+.+++++. + ++.+ .-..++.+|+.+++.
T Consensus 223 -~~~~~i~~~~~~~~~~-l-~~~~---~dg~v~iwd~~~~~~ 258 (313)
T 3odt_A 223 -GHESFVYCIKLLPNGD-I-VSCG---EDRTVRIWSKENGSL 258 (313)
T ss_dssp -CCSSCEEEEEECTTSC-E-EEEE---TTSEEEEECTTTCCE
T ss_pred -cCCceEEEEEEecCCC-E-EEEe---cCCEEEEEECCCCce
Confidence 1111233344555552 3 2222 346799999988873
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0067 Score=60.60 Aligned_cols=205 Identities=7% Similarity=0.039 Sum_probs=111.6
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-c--cc-CccceeEEecCCeEEEEEeCC--CCCCceEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P--LV-GVTASVEWAGNEALVYITMDE--ILRPDKAWLH 156 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~--~~-~~~~~~~WspDg~l~y~~~~~--~~~~~~l~~~ 156 (648)
+..+.++|||+.++.... .+.+...|+++|+++++.... . .. .....+.++|||.++++.... ......||++
T Consensus 89 ~~~i~~~~dg~l~v~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~ 167 (333)
T 2dg1_A 89 PAAIKIHKDGRLFVCYLG-DFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV 167 (333)
T ss_dssp EEEEEECTTSCEEEEECT-TSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred cceEEECCCCcEEEEeCC-CCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEE
Confidence 567899999986654432 211224799999998875421 1 11 123458899999777765421 1123568888
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCC-CCceeEee-----eccc--c-eeeeEe
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK-PEELRVLT-----PRVV--G-VDTAAS 227 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~-~~~~~~l~-----~~~~--~-~~~~~s 227 (648)
+..++ +...+.... ....++.++|||++|++... ....|+++|+++ +.....+. .... . ....++
T Consensus 168 ~~~~~--~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d 241 (333)
T 2dg1_A 168 SPDFR--TVTPIIQNI--SVANGIALSTDEKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 241 (333)
T ss_dssp CTTSC--CEEEEEEEE--SSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred eCCCC--EEEEeecCC--CcccceEECCCCCEEEEEeC--CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence 87654 222222221 22346789999998877543 246799999863 22122211 1001 1 113477
Q ss_pred ecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCC-----cccceEEEeC--CEEEEEEecCC---eeEEEEEEc
Q 006375 228 HRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRES-----VKLQDIQLFI--DHLAVYEREGG---LQKITTYRL 297 (648)
Q Consensus 228 ~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~l~~~~~~~~---~~~l~v~~~ 297 (648)
++|. +|+.+.. +..|.+++.++ .... .+..... ..+..+.+.. +.+++....+. ...|+.+++
T Consensus 242 ~~G~-l~v~~~~----~~~v~~~d~~g-~~~~-~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 242 SDDN-LYVAMYG----QGRVLVFNKRG-YPIG-QILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp TTCC-EEEEEET----TTEEEEECTTS-CEEE-EEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred CCCC-EEEEEcC----CCEEEEECCCC-CEEE-EEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 7775 6666543 24788888753 2222 2322211 0245555544 46666655432 235666666
Q ss_pred CCCC
Q 006375 298 PAVG 301 (648)
Q Consensus 298 ~~~g 301 (648)
...|
T Consensus 315 ~~~g 318 (333)
T 2dg1_A 315 FAKG 318 (333)
T ss_dssp SSCB
T ss_pred ccCc
Confidence 5433
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00036 Score=73.28 Aligned_cols=200 Identities=13% Similarity=0.050 Sum_probs=108.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc-cCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..+.|||||++|+.... +| .|+++|+.+........ ......++|+|++ .++.+...+ ..|.++++.
T Consensus 211 ~~~~~~~~~~~~~l~~g~~-dg----~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d----~~v~iwd~~ 281 (435)
T 4e54_B 211 WFCSLDVSASSRMVVTGDN-VG----NVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVD----QTVKIWDLR 281 (435)
T ss_dssp CCCCEEEETTTTEEEEECS-SS----BEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT----SBCCEEETT
T ss_pred cEEEEEECCCCCEEEEEeC-CC----cEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCc----ceeeEEecc
Confidence 3456789999999886532 33 68999997655433221 2234569999999 777766532 235667776
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-------ceeeeEeecCCE
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-------GVDTAASHRGNH 232 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-------~~~~~~s~dg~~ 232 (648)
+...................+.|+|||++|+..+. +..|.++|+.++.....+..... .....|++++..
T Consensus 282 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~---D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (435)
T 4e54_B 282 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ---KSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNL 358 (435)
T ss_dssp TCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES---SSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSC
T ss_pred cccccceEEEeeeccccccceeECCCCCeeEEEcC---CCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCE
Confidence 65332222221122233446789999999875443 35688889887762222222111 122347777776
Q ss_pred EEEEeccCC-------CCCcEEEEEeCCCCCcceeEecCCCCcccceE---EEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 233 FFITRRSDE-------LFNSELLACPVDNTSETTVLIPHRESVKLQDI---QLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 233 l~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
++.....++ .....|.+.|..++.....+.... ...+..+ ++++..++ . ..++ .|.+|++.
T Consensus 359 ~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fspdg~~la-s-g~d~--~i~iW~~~ 429 (435)
T 4e54_B 359 IVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNPMGDTLA-S-AMGY--HILIWSQQ 429 (435)
T ss_dssp EEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECTTSSCEE-E-ECSS--EEEECCCC
T ss_pred EEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECCCCCEEE-E-EcCC--cEEEEECC
Confidence 665543221 122346667776532222122222 2223333 33334332 3 3333 57888776
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0035 Score=60.30 Aligned_cols=190 Identities=11% Similarity=0.101 Sum_probs=107.2
Q ss_pred eeEEeCCCCCEEEEEEeC-CCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 84 GCFQVSPDNKLVAYAEDT-KGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~-~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
.++.++||| + +|.... .| ...|.++|+++|+.+.. .++........+.+| .+|.+. .....++.+|..+
T Consensus 24 ~Gl~~~~dg-~-Lyvstg~~~--~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t----~~~~~v~viD~~t 95 (266)
T 2iwa_A 24 QGLVYAEND-T-LFESTGLYG--RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVV----WLKNIGFIYDRRT 95 (266)
T ss_dssp EEEEECSTT-E-EEEEECSTT--TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEE----TTCSEEEEEETTT
T ss_pred ccEEEeCCC-e-EEEECCCCC--CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEE----ecCCEEEEEECCC
Confidence 478899996 3 455432 22 35899999999997753 233322223344556 776654 3456799999887
Q ss_pred CCCCcEEEEeec-CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc------eeeeEeecCCEE
Q 006375 161 DQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG------VDTAASHRGNHF 233 (648)
Q Consensus 161 ~~~~~~~~~~~~-~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~------~~~~~s~dg~~l 233 (648)
... ...+... ...+ ..++||++++++ + +++.|+++|.++.+....+.-...+ ....+. +| .|
T Consensus 96 ~~v--~~~i~~g~~~g~----glt~Dg~~l~vs-~--gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~l 164 (266)
T 2iwa_A 96 LSN--IKNFTHQMKDGW----GLATDGKILYGS-D--GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EV 164 (266)
T ss_dssp TEE--EEEEECCSSSCC----EEEECSSSEEEE-C--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EE
T ss_pred CcE--EEEEECCCCCeE----EEEECCCEEEEE-C--CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EE
Confidence 622 2222222 1222 357799988764 3 3679999999987723333221111 122344 55 66
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeE-ecC----------CCCcccceEEEeCC--EEEEEEecCCeeEEEEEEcC
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVL-IPH----------RESVKLQDIQLFID--HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~~ 298 (648)
|..... ...|.++|.++.....++ ++. .....+.++.++.+ .+++... ..++++++++.
T Consensus 165 yvn~~~----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk--~~~~v~~i~l~ 236 (266)
T 2iwa_A 165 WANIWQ----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK--LWPKLFEIKLH 236 (266)
T ss_dssp EEEETT----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET--TCSEEEEEEEE
T ss_pred EEecCC----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC--CCCeEEEEEEe
Confidence 644332 238999999875443432 221 11123567777754 5554443 34677777765
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.012 Score=61.76 Aligned_cols=234 Identities=13% Similarity=0.084 Sum_probs=127.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEe--cCCeEEEEEeCCCCCCceEEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWA--GNEALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~Ws--pDg~l~y~~~~~~~~~~~l~~~~ 157 (648)
.+..+.|+|++ +|+ +...+| +|.+||+.+++..... -......+.|+ +++.++++...+ ..|..++
T Consensus 164 ~V~~l~~~~~~-~l~-s~s~dg----~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d----~~i~vwd 233 (464)
T 3v7d_B 164 GVWALKYAHGG-ILV-SGSTDR----TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD----NTLHVWK 233 (464)
T ss_dssp CEEEEEECSTT-EEE-EEETTS----CEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETT----SCEEEEE
T ss_pred CEEEEEEcCCC-EEE-EEeCCC----CEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCC----CcEEEee
Confidence 56778999999 443 444444 6999999998765421 12233457777 566555555432 2477777
Q ss_pred CCCCCCCcE---------------------EEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEee
Q 006375 158 LEADQSNDI---------------------CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT 216 (648)
Q Consensus 158 l~~~~~~~~---------------------~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~ 216 (648)
+.+...... ..+... .... ..+++++++++..+.+ ..|.++|+.+++....+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v--~~~~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~ 307 (464)
T 3v7d_B 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH-MASV--RTVSGHGNIVVSGSYD---NTLIVWDVAQMKCLYILS 307 (464)
T ss_dssp CCCCCCC------CCSSEEESCGGGCTTEEEEECCC-SSCE--EEEEEETTEEEEEETT---SCEEEEETTTTEEEEEEC
T ss_pred CCCCcccccccccCCcceEeeccCCCeEEEEEccCc-cceE--EEEcCCCCEEEEEeCC---CeEEEEECCCCcEEEEec
Confidence 776532111 111111 1111 2357788888765433 458999998775222232
Q ss_pred ecccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEE
Q 006375 217 PRVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTY 295 (648)
Q Consensus 217 ~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~ 295 (648)
.....+ ...++|+|+.|+..+.. ..|...|+.+..... .+... ...+..+.+.++.++ ....++ .+.+|
T Consensus 308 ~~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~-~~~~h-~~~v~~~~~~~~~l~-s~s~dg--~v~vw 377 (464)
T 3v7d_B 308 GHTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGELMY-TLQGH-TALVGLLRLSDKFLV-SAAADG--SIRGW 377 (464)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTEEEE-EECCC-SSCEEEEEECSSEEE-EEETTS--EEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEE-EEeCC-CCcEEEEEEcCCEEE-EEeCCC--cEEEE
Confidence 222222 34589999977655543 357778887633222 33222 223666777766554 444444 57888
Q ss_pred EcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 296 RLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 296 ~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
++... .. ...+.... .+......+++.. ++.. + -..+..+|+.+++
T Consensus 378 d~~~~-~~--------~~~~~~~~-~~~~~~~~~~~~~-l~~~-~---dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 378 DANDY-SR--------KFSYHHTN-LSAITTFYVSDNI-LVSG-S---ENQFNIYNLRSGK 423 (464)
T ss_dssp ETTTC-CE--------EEEEECTT-CCCEEEEEECSSE-EEEE-E---TTEEEEEETTTCC
T ss_pred ECCCC-ce--------eeeecCCC-CccEEEEEeCCCE-EEEe-c---CCeEEEEECCCCc
Confidence 88742 11 11111110 1111233455553 3332 3 2689999999998
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0076 Score=59.69 Aligned_cols=197 Identities=13% Similarity=0.174 Sum_probs=105.0
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
..++.|+|||+ .|..+..+ ..|+.+|.+++........+....+++++||.+|+.... ....+|++++..++
T Consensus 34 pegia~~~~g~--lyv~d~~~---~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~--~~~~~v~~~d~~~g- 105 (306)
T 2p4o_A 34 LENLASAPDGT--IFVTNHEV---GEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWN--ADSIPVVSLVKSDG- 105 (306)
T ss_dssp EEEEEECTTSC--EEEEETTT---TEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEEC--TTSCEEEEEECTTS-
T ss_pred cceEEECCCCC--EEEEeCCC---CeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEecc--CCcceEEEEcCCCC-
Confidence 45789999998 45555433 268999988754332233344456889999986554432 11235888776665
Q ss_pred CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeec------ccc--eeeeEeecCCEE
Q 006375 163 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPR------VVG--VDTAASHRGNHF 233 (648)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~------~~~--~~~~~s~dg~~l 233 (648)
+-..+.......+..++...+++ .+++.. .....||++|..+++ ......+. ... .-..+++||+.|
T Consensus 106 -~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d--~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~l 181 (306)
T 2p4o_A 106 -TVETLLTLPDAIFLNGITPLSDT-QYLTAD--SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFL 181 (306)
T ss_dssp -CEEEEEECTTCSCEEEEEESSSS-EEEEEE--TTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEE
T ss_pred -eEEEEEeCCCccccCcccccCCC-cEEEEE--CCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEE
Confidence 22333333333344445545555 344432 234589999987653 12111110 011 112258999988
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcc--eeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 234 FITRRSDELFNSELLACPVDNTSET--TVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
|+.... +.+|++++++..+.. ..++... ....++.++.+..++.... +..++.+++.+
T Consensus 182 yv~d~~----~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~-~~~~V~~~~~~ 241 (306)
T 2p4o_A 182 YVSNTE----KMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATH-IYNSVVRIAPD 241 (306)
T ss_dssp EEEETT----TTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECB-TTCCEEEECTT
T ss_pred EEEeCC----CCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeC-CCCeEEEECCC
Confidence 876543 358999887641111 1122211 1356677776643333332 23467776654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.005 Score=64.80 Aligned_cols=185 Identities=11% Similarity=0.017 Sum_probs=114.6
Q ss_pred EeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCC
Q 006375 87 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQS 163 (648)
Q Consensus 87 ~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~ 163 (648)
.++|+|++|+.... +| .|+++|+.+++..... -......+.|+||+ .++ +...+ ..|+.+++.++
T Consensus 275 ~~~~~~~~l~~~~~-d~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~d----g~i~vwd~~~~-- 342 (464)
T 3v7d_B 275 TVSGHGNIVVSGSY-DN----TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMD----TTIRIWDLENG-- 342 (464)
T ss_dssp EEEEETTEEEEEET-TS----CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE-EEETT----SCEEEEETTTT--
T ss_pred EEcCCCCEEEEEeC-CC----eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEE-EEeCC----CcEEEEECCCC--
Confidence 45889998887654 33 6999999988766421 12234569999999 554 44322 34888898876
Q ss_pred CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEeccCCC
Q 006375 164 NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDEL 242 (648)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~~~~ 242 (648)
+....+... ......+.++ +++|+..+. +..|.++|+.++. .......... ....+++++..|+..+ .
T Consensus 343 ~~~~~~~~h-~~~v~~~~~~--~~~l~s~s~---dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~-d--- 411 (464)
T 3v7d_B 343 ELMYTLQGH-TALVGLLRLS--DKFLVSAAA---DGSIRGWDANDYS-RKFSYHHTNLSAITTFYVSDNILVSGS-E--- 411 (464)
T ss_dssp EEEEEECCC-SSCEEEEEEC--SSEEEEEET---TSEEEEEETTTCC-EEEEEECTTCCCEEEEEECSSEEEEEE-T---
T ss_pred cEEEEEeCC-CCcEEEEEEc--CCEEEEEeC---CCcEEEEECCCCc-eeeeecCCCCccEEEEEeCCCEEEEec-C---
Confidence 233333332 2233345665 566664433 3568899998876 3222222222 2345899998665543 2
Q ss_pred CCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEc
Q 006375 243 FNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 297 (648)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~ 297 (648)
..|.+.|+.++........ .....+..+.+.++.+++...+++...++++++
T Consensus 412 --g~i~iwd~~~g~~~~~~~~-~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ldf 463 (464)
T 3v7d_B 412 --NQFNIYNLRSGKLVHANIL-KDADQIWSVNFKGKTLVAAVEKDGQSFLEILDF 463 (464)
T ss_dssp --TEEEEEETTTCCEEESCTT-TTCSEEEEEEEETTEEEEEEEETTEEEEEEEEC
T ss_pred --CeEEEEECCCCcEEehhhc-cCCCcEEEEEecCCEEEEEEEeCCeEEEEEeec
Confidence 3688888876332221122 223457788888899998888888877887764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.018 Score=55.55 Aligned_cols=156 Identities=11% Similarity=0.027 Sum_probs=95.4
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc--CccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV--GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~--~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
...++.++|+++.|.++-... ..|.++++++......... .....++++|++ .||++... .....|++.++
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~----~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~--~~~~~I~~~~~ 153 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQL----DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN--RDNPKIETSHM 153 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTT----TEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC--SSSCEEEEEET
T ss_pred CccEEEEEecCCeEEEEECCC----CEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECC--CCCcEEEEEec
Confidence 345788999988876654322 3788999986543221111 123458899987 77765431 12457888888
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEec
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRR 238 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~ 238 (648)
++. ....+.. .....-.++++++|+++|++... ....|+++|+++.. .+.+.... ..-..+..+++.||+...
T Consensus 154 dg~--~~~~~~~-~~~~~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~-~~~~~~~~-~~P~gi~~d~~~lyva~~ 226 (267)
T 1npe_A 154 DGT--NRRILAQ-DNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPG-RRKVLEGL-QYPFAVTSYGKNLYYTDW 226 (267)
T ss_dssp TSC--CCEEEEC-TTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEE-EEEEEECC-CSEEEEEEETTEEEEEET
T ss_pred CCC--CcEEEEE-CCCCCCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCc-eEEEecCC-CCceEEEEeCCEEEEEEC
Confidence 754 2233332 22234557889999999887543 34689999998754 33333221 111235677888877544
Q ss_pred cCCCCCcEEEEEeCCC
Q 006375 239 SDELFNSELLACPVDN 254 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~ 254 (648)
. +.+|.+++.++
T Consensus 227 ~----~~~v~~~d~~~ 238 (267)
T 1npe_A 227 K----TNSVIAMDLAI 238 (267)
T ss_dssp T----TTEEEEEETTT
T ss_pred C----CCeEEEEeCCC
Confidence 3 24799999875
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.012 Score=60.52 Aligned_cols=194 Identities=9% Similarity=0.056 Sum_probs=118.8
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
..++.|.++++.|.|+ |..+ ..|+.++++++........+ ...+++..+.+ .||++-. ....|++.+++
T Consensus 118 ~~gl~~d~~~~~ly~~-D~~~---~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~----~~~~I~~~~~d 189 (386)
T 3v65_B 118 AIALDFHHRRELVFWS-DVTL---DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS----GTSRIEVANLD 189 (386)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEET----TTTEEEECBTT
T ss_pred cEEEEEecCCCeEEEE-eCCC---CcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcC----CCCeEEEEeCC
Confidence 4578899888887665 4333 27899999887643321111 22358888877 7766532 23468888877
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccc-eeeeEeecCCEEEEEe
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITR 237 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~~ 237 (648)
+. ....+... ....-.++++.|++.+|+++.. .....|+++++++.. .+.+.. .... .-..++++++.||+.-
T Consensus 190 g~--~~~~l~~~-~l~~P~giavdp~~g~ly~td~-~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 190 GA--HRKVLLWQ-SLEKPRAIALHPMEGTIYWTDW-GNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp SC--SCEEEECS-SCSCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEE
T ss_pred CC--ceEEeecC-CCCCCcEEEEEcCCCeEEEecc-CCCCEEEEEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEE
Confidence 54 23334332 2223346788898888887543 234789999998765 444432 2211 2245888899998874
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEc
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 297 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~ 297 (648)
.. +.+|.++++++ ...+.++... .....++.++.+.+++....+ .+|..++.
T Consensus 265 ~~----~~~I~~~d~dG-~~~~~~~~~~-~~~P~giav~~~~ly~td~~~--~~V~~~~~ 316 (386)
T 3v65_B 265 AK----HHVIERANLDG-SHRKAVISQG-LPHPFAITVFEDSLYWTDWHT--KSINSANK 316 (386)
T ss_dssp TT----TTEEEEECTTS-CSCEEEECSS-CSSEEEEEEETTEEEEEETTT--TEEEEEET
T ss_pred CC----CCEEEEEeCCC-CeeEEEEECC-CCCceEEEEECCEEEEeeCCC--CeEEEEEC
Confidence 43 35899999876 3333344333 223567777888877765433 45666663
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0027 Score=64.44 Aligned_cols=198 Identities=12% Similarity=0.086 Sum_probs=108.7
Q ss_pred EEeeEEeCCC--CCEEEEEEeCCCCeEEEEEEEECCCCCee--ec-c-ccCccceeEEecC--CeEEEEEeCCCCCCceE
Q 006375 82 SVGCFQVSPD--NKLVAYAEDTKGDEIYTVYVIDIETGTPV--GK-P-LVGVTASVEWAGN--EALVYITMDEILRPDKA 153 (648)
Q Consensus 82 ~~~~~~~SPD--G~~la~~~~~~G~e~~~l~v~dl~~g~~~--~~-~-~~~~~~~~~WspD--g~l~y~~~~~~~~~~~l 153 (648)
.+..+.|||+ |++|+.... +| .|++||+.+++.. .. . .......++|+|+ +.++++... ...|
T Consensus 57 ~v~~~~~~~~~~~~~l~s~~~-dg----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----d~~i 127 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILASCSY-DG----KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS----DGKV 127 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEET-TS----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET----TSEE
T ss_pred cEEEEEeCCCCCCCEEEEecc-CC----EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC----CCcE
Confidence 4678899988 888876543 34 6899999988632 21 1 1223456999999 744444432 2358
Q ss_pred EEEECCCCCCCcEEEEeecCCCeEEEEEeCC-------------CCcEEEEEEccccccEEEEEECCCCC-ceeEe---e
Q 006375 154 WLHKLEADQSNDICLYHEKDDIYSLGLQASE-------------SKKFLFIASESKITRFVFYLDVSKPE-ELRVL---T 216 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-------------Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l---~ 216 (648)
..+++.+........+... ......+.|+| |+++|+..+.+ ..|+++|+.++. ....+ .
T Consensus 128 ~v~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~ 203 (379)
T 3jrp_A 128 SVVEFKENGTTSPIIIDAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---NLVKIWKYNSDAQTYVLESTLE 203 (379)
T ss_dssp EEEECCTTSCCCEEEEECC-TTCEEEEEECCCC----------CTTCEEEEEETT---SCEEEEEEETTTTEEEEEEEEC
T ss_pred EEEecCCCCceeeEEecCC-CCceEEEEEcCccccccccccCCCCCCEEEEEeCC---CeEEEEEecCCCcceeeEEEEe
Confidence 8888877643333333333 33445778999 68888765443 357778877654 11222 1
Q ss_pred ecccce-eeeEeec---CCEEEEEeccCCCCCcEEEEEeCCCCCc--ceeEecC-CCCcccceEEEeCCE-EEEEEecCC
Q 006375 217 PRVVGV-DTAASHR---GNHFFITRRSDELFNSELLACPVDNTSE--TTVLIPH-RESVKLQDIQLFIDH-LAVYEREGG 288 (648)
Q Consensus 217 ~~~~~~-~~~~s~d---g~~l~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~-l~~~~~~~~ 288 (648)
.....+ ...|+|+ ++.|+..+.. ..|...++..... ...+... .....+..+.+.++. .++....++
T Consensus 204 ~h~~~v~~~~~sp~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 204 GHSDWVRDVAWSPTVLLRSYLASVSQD-----RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETT-----SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred cccCcEeEEEECCCCCCCCeEEEEeCC-----CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 122222 3459999 5555444432 2455566654221 1112221 122335566665543 233333444
Q ss_pred eeEEEEEEcCC
Q 006375 289 LQKITTYRLPA 299 (648)
Q Consensus 289 ~~~l~v~~~~~ 299 (648)
.+.+|+++.
T Consensus 279 --~i~iw~~~~ 287 (379)
T 3jrp_A 279 --KVTLWKENL 287 (379)
T ss_dssp --SEEEEEEEE
T ss_pred --cEEEEeCCC
Confidence 466666653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0036 Score=62.76 Aligned_cols=199 Identities=11% Similarity=0.096 Sum_probs=99.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCe------eecccc---CccceeEEecCCeEEEEEeCCCCCCce
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTP------VGKPLV---GVTASVEWAGNEALVYITMDEILRPDK 152 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~------~~~~~~---~~~~~~~WspDg~l~y~~~~~~~~~~~ 152 (648)
.+..+.|||||++||-... +| +|++||++++.. ....+. +....++|+|||.++++...+ ..
T Consensus 60 ~v~~v~~sp~~~~las~s~-D~----~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D----~~ 130 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSF-DS----TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD----KS 130 (330)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT----SC
T ss_pred CEEEEEECCCCCEEEEEeC-CC----cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC----CE
Confidence 4678899999999886653 33 688888864321 111122 224469999999444444422 34
Q ss_pred EEEEECCCCCCCcE--EEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC--ceeEeeecccce-eeeEe
Q 006375 153 AWLHKLEADQSNDI--CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE--ELRVLTPRVVGV-DTAAS 227 (648)
Q Consensus 153 l~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~--~~~~l~~~~~~~-~~~~s 227 (648)
|+.+++........ ..+... ......+.|+||+++|+..+.+ ..|.++|+.++. ....+......+ ...|+
T Consensus 131 v~iwd~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D---~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~ 206 (330)
T 2hes_X 131 VWIWETDESGEEYECISVLQEH-SQDVKHVIWHPSEALLASSSYD---DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFD 206 (330)
T ss_dssp EEEEECCTTCCCCEEEEEECCC-SSCEEEEEECSSSSEEEEEETT---SCEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred EEEEeccCCCCCeEEEEEeccC-CCceEEEEECCCCCEEEEEcCC---CeEEEEECCCCCeeEEEEccCCCCcEEEEEec
Confidence 77788743321222 233332 2344578999999987654332 345566655542 122222222222 23588
Q ss_pred ec--CCEEEEEeccCCCCCcEEEEEeCCC-CCccee----EecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 228 HR--GNHFFITRRSDELFNSELLACPVDN-TSETTV----LIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 228 ~d--g~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
|+ +..|+-.+.. ...+|+-+.... .....| .++......+..+.+..+.+++....++ .+.+++..
T Consensus 207 ~~~~~~~l~s~s~D---~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg--~v~iw~~~ 279 (330)
T 2hes_X 207 KTEGVFRLCSGSDD---STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADG--VLAVYEEV 279 (330)
T ss_dssp CSSSSCEEEEEETT---SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTS--CEEEEEEE
T ss_pred CCCCeeEEEEEeCC---CeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCC--EEEEEEcC
Confidence 87 4344333322 234444432211 011122 2222122335666666655555665555 45566654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0051 Score=61.62 Aligned_cols=183 Identities=10% Similarity=0.048 Sum_probs=102.7
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-ccc-----CccceeEEecCCeEEEEEeCC--CCCCceEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-----GVTASVEWAGNEALVYITMDE--ILRPDKAW 154 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~-----~~~~~~~WspDg~l~y~~~~~--~~~~~~l~ 154 (648)
+..+.++|||++++.+ . + .|+++|+++|+.... ... .....+.|+|||.+++..... ......||
T Consensus 92 v~~i~~~~dg~l~v~~--~-~----gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 92 GSALAKISDSKQLIAS--D-D----GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp EEEEEEEETTEEEEEE--T-T----EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred ceEEEEeCCCeEEEEE--C-C----CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence 5677899999977654 1 2 399999999886532 111 123458899999777765422 11235688
Q ss_pred EEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECC--CC-C--ceeEeeec--ccce--eee
Q 006375 155 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVS--KP-E--ELRVLTPR--VVGV--DTA 225 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~--~~-~--~~~~l~~~--~~~~--~~~ 225 (648)
+++ ++ +...+.... ....++.|+|||+.|++... ....|+++|++ ++ . ..+.+... ..+. ...
T Consensus 165 ~~~--~g--~~~~~~~~~--~~~~~i~~s~dg~~lyv~~~--~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~ 236 (326)
T 2ghs_A 165 HVA--KG--KVTKLFADI--SIPNSICFSPDGTTGYFVDT--KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSV 236 (326)
T ss_dssp EEE--TT--EEEEEEEEE--SSEEEEEECTTSCEEEEEET--TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEE
T ss_pred EEe--CC--cEEEeeCCC--cccCCeEEcCCCCEEEEEEC--CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeE
Confidence 888 33 222232221 23346789999999887533 24689999986 55 3 11222211 1111 134
Q ss_pred EeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEe-C--CEEEEEEecCC
Q 006375 226 ASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLF-I--DHLAVYEREGG 288 (648)
Q Consensus 226 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~l~~~~~~~~ 288 (648)
++++|. ||+.+.. +..|++++.++ .... .+.... ..+..+.+. . +.+++.....+
T Consensus 237 ~d~~G~-lwva~~~----~~~v~~~d~~g-~~~~-~i~~~~-~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 237 CDAEGH-IWNARWG----EGAVDRYDTDG-NHIA-RYEVPG-KQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp ECTTSC-EEEEEET----TTEEEEECTTC-CEEE-EEECSC-SBEEEEEEESTTSCEEEEEEBCTT
T ss_pred ECCCCC-EEEEEeC----CCEEEEECCCC-CEEE-EEECCC-CCcEEEEEecCCCCEEEEEecCCC
Confidence 667774 6666543 14788888743 2222 222221 234555554 2 45666665554
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0024 Score=64.06 Aligned_cols=193 Identities=10% Similarity=0.091 Sum_probs=108.2
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccC------ccceeEEecCCeEEEEEeCCCCCCceEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG------VTASVEWAGNEALVYITMDEILRPDKAWL 155 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~------~~~~~~WspDg~l~y~~~~~~~~~~~l~~ 155 (648)
...+.+|||| + +|..+..+ ..|+++|+++++.... .... ....+++ .++++|.... +....|..
T Consensus 86 p~~i~~~~~g-~-lyv~~~~~---~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~---~~~~~v~v 156 (328)
T 3dsm_A 86 PRYIHFLSDE-K-AYVTQIWD---YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCW---SYQNRILK 156 (328)
T ss_dssp EEEEEEEETT-E-EEEEEBSC---SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEEC---TTCCEEEE
T ss_pred CcEEEEeCCC-e-EEEEECCC---CeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcC---CCCCEEEE
Confidence 3467789999 4 46665222 3799999999886532 2222 2234667 3337755532 12456999
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccc--------cccEEEEEECCCCCceeE-eee--cccceee
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK--------ITRFVFYLDVSKPEELRV-LTP--RVVGVDT 224 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~--------~~~~l~~~dl~~~~~~~~-l~~--~~~~~~~ 224 (648)
+++.++.. ....... ....++.+++||+. ++.+... ....|+++|.++++ ... +.- .......
T Consensus 157 iD~~t~~~--~~~i~~g--~~p~~i~~~~dG~l-~v~~~~~~~~~~~~~~~~~v~~id~~t~~-v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 157 IDTETDKV--VDELTIG--IQPTSLVMDKYNKM-WTITDGGYEGSPYGYEAPSLYRIDAETFT-VEKQFKFKLGDWPSEV 230 (328)
T ss_dssp EETTTTEE--EEEEECS--SCBCCCEECTTSEE-EEEBCCBCTTCSSCBCCCEEEEEETTTTE-EEEEEECCTTCCCEEE
T ss_pred EECCCCeE--EEEEEcC--CCccceEEcCCCCE-EEEECCCccCCccccCCceEEEEECCCCe-EEEEEecCCCCCceeE
Confidence 99887621 2222221 11224577999984 4443322 13689999998876 332 221 1112335
Q ss_pred eEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee-EecCCCCcccceEEEeC--CEEEEEEec--CCeeEEEEEEcC
Q 006375 225 AASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFI--DHLAVYERE--GGLQKITTYRLP 298 (648)
Q Consensus 225 ~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~l~~~~~~--~~~~~l~v~~~~ 298 (648)
.++|||+.||+... .|+++|.++...... .++.. .....++.+++ +.+++.... .....+.+++.+
T Consensus 231 a~~~d~~~lyv~~~-------~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 231 QLNGTRDTLYWINN-------DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EECTTSCEEEEESS-------SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEecCCCEEEEEcc-------EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 68999998877532 688999876332111 22221 22355677764 455555421 234678888776
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0048 Score=64.05 Aligned_cols=198 Identities=9% Similarity=0.014 Sum_probs=112.8
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC-ccceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG-VTASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~-~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
......+.|+|||+ .|..+..+ ..|+++|++++......... ... ++|+||+..+|...... ...|++++.
T Consensus 130 ~~~P~~la~d~~g~--lyv~d~~~---~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~--~~~I~~~d~ 201 (409)
T 3hrp_A 130 FKYMWGIAAVGNNT--VLAYQRDD---PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEG--THTVYVYMK 201 (409)
T ss_dssp CCCEEEEEECSTTE--EEEEETTT---TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSST--TCEEEEEEG
T ss_pred cCCceEEEEeCCCC--EEEEecCC---CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCC--CceEEEEEc
Confidence 34566889999998 45555533 37999999988765432112 223 99999994334443221 226888888
Q ss_pred CCCCCCcEEEEee--c-CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEe----eecccc-e---eeeEe
Q 006375 159 EADQSNDICLYHE--K-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL----TPRVVG-V---DTAAS 227 (648)
Q Consensus 159 ~~~~~~~~~~~~~--~-~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l----~~~~~~-~---~~~~s 227 (648)
.++.. ...... . ......++.++|++..|++. .. ...|+++|++++. ...+ .....+ . ...++
T Consensus 202 ~~~~~--~~~~g~~~~~~~~~p~~iav~p~~g~lyv~-d~--~~~I~~~d~~~~~-~~~~~~~~~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 202 ASGWA--PTRIGQLGSTFSGKIGAVALDETEEWLYFV-DS--NKNFGRFNVKTQE-VTLIKQLELSGSLGTNPGPYLIYY 275 (409)
T ss_dssp GGTTC--EEEEEECCTTSCSCCCBCEECTTSSEEEEE-CT--TCEEEEEETTTCC-EEEEEECCCCSCCCCSSCCEEEEE
T ss_pred CCCce--eEEeeeccchhcCCcEEEEEeCCCCeEEEE-EC--CCcEEEEECCCCC-EEEEecccccCCCCCCccccEEEe
Confidence 76522 222211 1 11223356789966677763 32 4689999998876 4444 111111 1 45588
Q ss_pred ecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCC--C-----------CcccceEEEeCCE-EEEEEecCCeeEEE
Q 006375 228 HRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHR--E-----------SVKLQDIQLFIDH-LAVYEREGGLQKIT 293 (648)
Q Consensus 228 ~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~-l~~~~~~~~~~~l~ 293 (648)
|+++.||+.... +.+|++++.++ . ...+.... . -....++.++.+. +++... .+..+|+
T Consensus 276 p~~g~lyv~d~~----~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-~~~~~I~ 348 (409)
T 3hrp_A 276 FVDSNFYMSDQN----LSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-FKGYCLR 348 (409)
T ss_dssp TTTTEEEEEETT----TTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET-TTTCEEE
T ss_pred CCCCEEEEEeCC----CCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC-CCCCEEE
Confidence 987888877442 35899988765 2 22222221 0 0124566776654 333322 1345677
Q ss_pred EEEcC
Q 006375 294 TYRLP 298 (648)
Q Consensus 294 v~~~~ 298 (648)
++++.
T Consensus 349 ~~~~~ 353 (409)
T 3hrp_A 349 KLDIL 353 (409)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 77754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0084 Score=60.76 Aligned_cols=233 Identities=8% Similarity=0.044 Sum_probs=123.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..++|||||++||...+. .+.++++++++.... ...+ ...+.|++++ .++.+... ...|.++++.
T Consensus 21 ~V~~v~fs~dg~~la~g~~~------~~~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----d~~v~iWd~~ 89 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLK------SFEIYNVHPVAHIMSQEMRH-LSKVRMLHRTNYVAFVTGV----KEVVHIWDDV 89 (355)
T ss_dssp CCCEEEECTTSSEEEEECSS------EEEEEEETTEEEEEEEECSC-CCEEEECTTSSEEEEECSS----TTEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEcCC------EEEEEecCCcceeeeeecCC-eEEEEEcCCCCEEEEEECC----ccEEEEEECC
Confidence 45678999999999876431 256888887765432 2223 3458899998 66665432 2368888987
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCC-CceeEeeecccceeeeEeecCCEEEEEec
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP-EELRVLTPRVVGVDTAASHRGNHFFITRR 238 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~-~~~~~l~~~~~~~~~~~s~dg~~l~~~~~ 238 (648)
++ +....+.. ......+.+++++ +++.. ...|+++|+.++ +....+.. ......+++ ..+++.+.
T Consensus 90 ~~--~~~~~~~~--~~~v~~v~~~~~~--~~~~~----~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg 155 (355)
T 3vu4_A 90 KK--QDVSRIKV--DAPVKDLFLSREF--IVVSY----GDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNE 155 (355)
T ss_dssp TT--EEEEEEEC--SSCEEEEEECSSE--EEEEE----TTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEES
T ss_pred CC--cEEEEEEC--CCceEEEEEcCCE--EEEEE----cCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCC
Confidence 76 22333332 2234466777775 33332 356999999887 31222222 112233555 55666532
Q ss_pred cCCCCCcEEEEEeCCCCCc----------------ceeEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcCCCC
Q 006375 239 SDELFNSELLACPVDNTSE----------------TTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPAVG 301 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~~g 301 (648)
. ....|.+.|+..... ...+..+.. .+..+.+.++. +++....++. .+.+|++.. +
T Consensus 156 ~---~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~--~v~~~~~s~~g~~l~s~s~d~~-~v~iwd~~~-~ 228 (355)
T 3vu4_A 156 F---NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN--PIKMVRLNRKSDMVATCSQDGT-IIRVFKTED-G 228 (355)
T ss_dssp S---CTTCEEEEECCC------------------CCEEECCCSS--CEEEEEECTTSSEEEEEETTCS-EEEEEETTT-C
T ss_pred C---cCcEEEEEECCCCCccccccccccccccCcccEEEEccCC--ceEEEEECCCCCEEEEEeCCCC-EEEEEECCC-C
Confidence 2 224577777765220 121222322 35666666543 3344444441 277888874 2
Q ss_pred CcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 302 EPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 302 ~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
..+. .+........+..+.+++++..+. +.+ .. ..+..+|+..+.
T Consensus 229 ~~~~------~~~~g~h~~~v~~~~~s~~~~~l~-s~s-~d--~~v~iw~~~~~~ 273 (355)
T 3vu4_A 229 VLVR------EFRRGLDRADVVDMKWSTDGSKLA-VVS-DK--WTLHVFEIFNDQ 273 (355)
T ss_dssp CEEE------EEECTTCCSCEEEEEECTTSCEEE-EEE-TT--CEEEEEESSCCS
T ss_pred cEEE------EEEcCCCCCcEEEEEECCCCCEEE-EEE-CC--CEEEEEEccCCC
Confidence 2221 111000111244455667776433 333 22 578888886553
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00021 Score=67.92 Aligned_cols=144 Identities=10% Similarity=-0.006 Sum_probs=81.1
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC-CCch----------------hHHHHHHCCCEEE
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNS----------------SRLSLLDRGFIFA 439 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~----------------~~~~l~~~G~~v~ 439 (648)
--+.+....+..+-.|++.. .. .....|++|+++||+|.+... .+.. ....|.+ -..++
T Consensus 22 Gy~~v~~~~~~~lFywf~es-~~--~~~~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW~~-~anvl 97 (255)
T 1whs_A 22 GYITVDEGAGRSLFYLLQEA-PE--DAQPAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNK-VANVL 97 (255)
T ss_dssp EEEEEETTTTEEEEEEEECC-CG--GGCSCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCGGG-TSEEE
T ss_pred EEEECCCCCCcEEEEEEEEe-cC--CCCCCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCcccccc-cCCEE
Confidence 34445444677787775543 32 235689999999999976543 2100 0113333 47899
Q ss_pred EEccCCCCCCChhhhhccc-ccCCCCcHhHHHHHHHH-HHHcCCCCCCeEEEEeeChhHHHHHHHHhh----C--CCcee
Q 006375 440 IAQIRGGGELGRQWYENGK-FLKKKNTFTDFIACAEY-LIKNCYCTKEKLCIEGRSAGGLLIGAVLNM----R--PDLFK 511 (648)
Q Consensus 440 ~~~~rG~g~~g~~~~~~~~-~~~~~~~~~D~~~~~~~-l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~----~--p~~~~ 511 (648)
.+|.+-+.|+...-...+. ........+|+...++. +...+.....++.|+|.|+||..+..++.. . .-.++
T Consensus 98 fiDqPvGtGfSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~inLk 177 (255)
T 1whs_A 98 FLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLK 177 (255)
T ss_dssp EECCSTTSTTCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred EEecCCCCccCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCcccccc
Confidence 9996543444321111111 01111233455544443 333333445789999999999976554432 1 13578
Q ss_pred EEEecCCcccccc
Q 006375 512 AAVAAVPFVDVLT 524 (648)
Q Consensus 512 a~v~~~~~~d~~~ 524 (648)
++++..|++|...
T Consensus 178 Gi~ign~~~d~~~ 190 (255)
T 1whs_A 178 GFMVGNGLIDDYH 190 (255)
T ss_dssp EEEEEEECCBHHH
T ss_pred eEEecCCccCHHH
Confidence 9999999988643
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0025 Score=65.42 Aligned_cols=196 Identities=12% Similarity=0.065 Sum_probs=109.0
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc---c-c---CccceeEEec-CCeEEEEEeCCCCCCceEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP---L-V---GVTASVEWAG-NEALVYITMDEILRPDKAW 154 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~---~-~---~~~~~~~Wsp-Dg~l~y~~~~~~~~~~~l~ 154 (648)
+....|+|++....++...+| +|.+||+.+++..... . . .....+.|++ ++.++++...+ ..|.
T Consensus 160 v~~~~~~~~~~~~l~s~s~D~----~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D----~~v~ 231 (380)
T 3iz6_a 160 ASSCQYVPDQETRLITGSGDQ----TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD----TTVR 231 (380)
T ss_dssp CCCCBCCSSSSSCEEEECTTS----CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT----SCEE
T ss_pred eEEEEEecCCCCEEEEECCCC----cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC----CeEE
Confidence 446678898654444544444 7999999998865321 1 1 1234578877 55666665432 3477
Q ss_pred EEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc--------ceeeeE
Q 006375 155 LHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV--------GVDTAA 226 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~--------~~~~~~ 226 (648)
.+++.... .....+..+. .....+.|+|||++|+..+. +..|.++|+.++.....+..... -....|
T Consensus 232 ~wd~~~~~-~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~---D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (380)
T 3iz6_a 232 LWDLRITS-RAVRTYHGHE-GDINSVKFFPDGQRFGTGSD---DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306 (380)
T ss_dssp EEETTTTC-CCCEEECCCS-SCCCEEEECTTSSEEEEECS---SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred EEECCCCC-cceEEECCcC-CCeEEEEEecCCCeEEEEcC---CCeEEEEECCCCcEEEEecccccccccccCceEEEEE
Confidence 88886432 2233443332 23346789999998875433 34588889988751222211111 112458
Q ss_pred eecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEe--cCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcC
Q 006375 227 SHRGNHFFITRRSDELFNSELLACPVDNTSETTVLI--PHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 227 s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~ 298 (648)
+|+|+.|+..+.. ..|.+.|+........+. .......+..+.+.++. .++....++ .+.+|++.
T Consensus 307 s~~g~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~--~i~iW~~~ 374 (380)
T 3iz6_a 307 SISGRLLFAGYSN-----GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK--NLKIWAFS 374 (380)
T ss_dssp CSSSSEEEEECTT-----SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS--CEEEEECC
T ss_pred CCCCCEEEEEECC-----CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC--CEEEEecC
Confidence 9999977654432 467788876532221121 11122235666665543 334444444 56677776
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0033 Score=63.39 Aligned_cols=175 Identities=10% Similarity=0.119 Sum_probs=93.9
Q ss_pred EEEEEECCCCCeeec-ccc--CccceeEEec--CCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEe
Q 006375 108 TVYVIDIETGTPVGK-PLV--GVTASVEWAG--NEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQA 182 (648)
Q Consensus 108 ~l~v~dl~~g~~~~~-~~~--~~~~~~~Wsp--Dg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (648)
.+.++++.+++.... ... +....++|+| ++.++.+...+ ..|..+++.++. ...+...........+.|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~--~~~~~~~~~~~~i~~~~~ 178 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNR----GTIGFQSYEDDS--QYIVHSAKSDVEYSSGVL 178 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETT----CCEEEEESSSSC--EEEEECCCSSCCCCEEEE
T ss_pred ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCC----CcEEEEECCCCc--EEEEEecCCCCceEEEEE
Confidence 345567777764432 111 2345699999 88444444422 348888988762 233332222223446789
Q ss_pred CCCCcEEEEEEccccccEEEEEECCCCCce-eEeee-cccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcce
Q 006375 183 SESKKFLFIASESKITRFVFYLDVSKPEEL-RVLTP-RVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETT 259 (648)
Q Consensus 183 s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~-~~l~~-~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 259 (648)
+|||++|+..+. +..|.++|+.+++.. ..+.. ....+ ...|+|+|..|+..+ . + .|...|+.......
T Consensus 179 ~pdg~~lasg~~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~-~----~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 179 HKDSLLLALYSP---DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D-Q----TVVCFDLRKDVGTL 249 (343)
T ss_dssp CTTSCEEEEECT---TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S-S----BEEEEETTSSTTCB
T ss_pred CCCCCEEEEEcC---CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C-C----eEEEEEcCCCCcce
Confidence 999998875432 356899999888722 34433 23333 346999998776665 2 2 57777887633222
Q ss_pred eEecC-CCCcccc--eEEEeCC--EEEEEEecCCeeEEEEEEcCC
Q 006375 260 VLIPH-RESVKLQ--DIQLFID--HLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 260 ~~~~~-~~~~~~~--~~~~~~~--~l~~~~~~~~~~~l~v~~~~~ 299 (648)
.+.+. .....+. .+.+..+ .++.....++ .+.+|+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~--~i~v~~~~~ 292 (343)
T 3lrv_A 250 AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN--SLTIYKFDK 292 (343)
T ss_dssp SSCCCBC-----CCEEEEECTTSSEEEEEETTTT--EEEEEEECT
T ss_pred eecccccccccccceEEEECCCCCEEEEecCCCC--cEEEEEEcc
Confidence 11110 0111122 2555544 4443333233 577777763
|
| >4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0003 Score=74.24 Aligned_cols=126 Identities=20% Similarity=0.237 Sum_probs=81.2
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCC--chhHHHHHHC-CCEEEEEccCCCCCCChhhhhcc--------
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF--NSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENG-------- 457 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~--~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~-------- 457 (648)
..-..+.-.... ..+..|++|++ ||-+.. .... ...+..+|++ |..+++...|- ||++..-..
T Consensus 27 F~QRY~~n~~~~-~~~~gPIfl~~-gGEg~~-~~~~~~~g~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~st~~~nL 100 (472)
T 4ebb_A 27 FPQRFLVSDRFW-VRGEGPIFFYT-GNEGDV-WAFANNSAFVAELAAERGALLVFAEHRY---YGKSLPFGAQSTQRGHT 100 (472)
T ss_dssp EEEEEEEECTTC-CTTTCCEEEEE-CCSSCH-HHHHHHCHHHHHHHHHHTCEEEEECCTT---STTCCTTGGGGGSTTSC
T ss_pred EEEEEEEeccee-CCCCCcEEEEE-CCCccc-cccccCccHHHHHHHHhCCeEEEEeccc---ccCCcCCCCCCcccccc
Confidence 444444444442 22346888888 433321 1101 1122345554 99999999994 444432111
Q ss_pred cccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 458 KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 458 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
+-+.-++++.|+...++++.........++.++|+|+||.|++++-..+|++|.++++.++++
T Consensus 101 ~yLt~eQALaD~a~fi~~~k~~~~~~~~pwI~~GGSY~G~LaAW~R~kYP~lv~ga~ASSApv 163 (472)
T 4ebb_A 101 ELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPV 163 (472)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCCT
T ss_pred ccCCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEccCccchhhHHHHhhCCCeEEEEEecccce
Confidence 112234578999999999887654555799999999999999999999999999888776543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.026 Score=57.07 Aligned_cols=193 Identities=9% Similarity=0.057 Sum_probs=118.1
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
..++.|+|+++.|.|+- ..+ ..|+.++++++........+ ...+++..+.+ .||++-. ....|++.+++
T Consensus 75 ~~~l~~d~~~~~ly~~D-~~~---~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~----~~~~I~~~~~d 146 (349)
T 3v64_C 75 AIALDFHHRRELVFWSD-VTL---DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS----GTSRIEVANLD 146 (349)
T ss_dssp EEEEEEETTTTEEEEEE-TTT---TEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET----TTTEEEEEETT
T ss_pred eEEEEEeccccEEEEEe-ccC---CceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcC----CCCeEEEEcCC
Confidence 35788999888876654 333 27899999887643321111 12358888777 7766532 23468888887
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccc-eeeeEeecCCEEEEEe
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITR 237 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~~ 237 (648)
+. ....+... ....-.+++++|++.+|+++.. .....|+++++++.. .+.+.. .... .-..++++++.||+.-
T Consensus 147 G~--~~~~l~~~-~l~~P~~iavdp~~g~ly~td~-~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 147 GA--HRKVLLWQ-SLEKPRAIALHPMEGTIYWTDW-GNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp SC--SCEEEECT-TCSCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred CC--ceEEEEeC-CCCCcceEEEecCcCeEEEecc-CCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 65 23333322 2223346788898888887643 224789999998765 444432 2111 2245888899998874
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEE
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYR 296 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~ 296 (648)
.. +.+|.++++++ ...+.++... .....++.++.+.+++....+ .+|..++
T Consensus 222 ~~----~~~I~~~~~dG-~~~~~~~~~~-~~~P~giav~~~~ly~td~~~--~~V~~~~ 272 (349)
T 3v64_C 222 AK----HHVIERANLDG-SHRKAVISQG-LPHPFAITVFEDSLYWTDWHT--KSINSAN 272 (349)
T ss_dssp TT----TTEEEEEETTS-CSCEEEECSS-CSSEEEEEEETTEEEEEETTT--TEEEEEE
T ss_pred CC----CCEEEEEeCCC-CceEEEEeCC-CCCceEEEEECCEEEEecCCC--CeEEEEE
Confidence 43 35899999876 3333344333 223566777888877765443 3566665
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0043 Score=63.11 Aligned_cols=113 Identities=8% Similarity=-0.159 Sum_probs=65.9
Q ss_pred CCCEEEEEEeCCCCeEE-EEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeC--C---CCCCceEEEEECCCCCC
Q 006375 91 DNKLVAYAEDTKGDEIY-TVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMD--E---ILRPDKAWLHKLEADQS 163 (648)
Q Consensus 91 DG~~la~~~~~~G~e~~-~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~--~---~~~~~~l~~~~l~~~~~ 163 (648)
+..+ +|..+..++.-. +|.|+|+++++.+....-+....+..|||| .+|..... . ..+...|..+|+.+.+.
T Consensus 30 ~~~~-~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 30 ISRR-SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp CTTE-EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred CCCe-EEEECCccCCccceEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 3344 677766543112 899999999987743211222269999999 66555421 1 12245688999988743
Q ss_pred CcEEEEe-------ecCCCeEEEEEeCCCCcEEEEEEccccccEEEE--EECCC
Q 006375 164 NDICLYH-------EKDDIYSLGLQASESKKFLFIASESKITRFVFY--LDVSK 208 (648)
Q Consensus 164 ~~~~~~~-------~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~--~dl~~ 208 (648)
....... ..++. .+.+||||+++++... ...+.+.+ +|+.+
T Consensus 109 v~~I~v~~~~~~~~g~~P~---~ia~SpDGk~lyVan~-~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVH---IIGNCASSACLLFFLF-GSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEEETTSCSCCBSCCTT---SEEECTTSSCEEEEEC-SSSCEEEEEETTTEE
T ss_pred EEEEECCCccccccCCCcc---eEEEcCCCCEEEEEcc-CCCCeEEEEEEchhh
Confidence 2222221 01222 4578999999987632 23345666 66644
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.014 Score=60.80 Aligned_cols=110 Identities=12% Similarity=0.057 Sum_probs=67.8
Q ss_pred EeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc---cCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCC
Q 006375 87 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL---VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 87 ~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~---~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
.++|||++|+.... +| .|+++|+.+++.... .. .+....++|+||+.++++...+ ..|..+++.++
T Consensus 177 ~~~~~~~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~- 246 (437)
T 3gre_A 177 FVNEEKSLLVALTN-LS----RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR----GIIDIWDIRFN- 246 (437)
T ss_dssp EECSSCEEEEEEET-TS----EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT----SCEEEEETTTT-
T ss_pred EEcCCCCEEEEEeC-CC----eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC----CeEEEEEcCCc-
Confidence 37788998887654 33 799999999887642 11 2334569999999444444422 34888888775
Q ss_pred CCcEEEEeecCCCeEEEE----EeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 163 SNDICLYHEKDDIYSLGL----QASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~----~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
+....+..........+ .+++|+++|+..+. +..|.++|+.+++
T Consensus 247 -~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~ 294 (437)
T 3gre_A 247 -VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS---KTFLTIWNFVKGH 294 (437)
T ss_dssp -EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST---TEEEEEEETTTTE
T ss_pred -cEEEEEecCCCCceEEEEeccccCCCccEEEEEcC---CCcEEEEEcCCCc
Confidence 22222221222223345 45567877764332 3578999998765
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.072 Score=52.84 Aligned_cols=196 Identities=5% Similarity=0.028 Sum_probs=114.2
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC---CCeeecccc---CccceeEEecCC-eEEEEEeCCCCCCceEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET---GTPVGKPLV---GVTASVEWAGNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~---g~~~~~~~~---~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~ 155 (648)
..++.|+++++.|.|+-... ..|+.+++++ +......+. ....++++.+.+ .||++-. ....|.+
T Consensus 32 p~g~~~d~~~~~ly~~D~~~----~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~----~~~~I~~ 103 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLSQ----RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS----VLGTVSV 103 (316)
T ss_dssp EEEEEEETTTTEEEEEETTT----TEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET----TTTEEEE
T ss_pred eEEEEEEeCCCEEEEEECCC----CcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEEC----CCCEEEE
Confidence 34788999888876664332 3789999887 121111111 122458888766 7766532 2356888
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-ccc-eeeeEeecCCEE
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHF 233 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-~~~-~~~~~s~dg~~l 233 (648)
.++.+. ....+... ....-.+++..|++.+|+++.. .....|+++++++.. .+.+... ... ....++++++.|
T Consensus 104 ~~~~g~--~~~~~~~~-~~~~P~~iavdp~~g~ly~~d~-~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 104 ADTKGV--KRKTLFRE-NGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp EETTSS--SEEEEEEC-TTCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEE
T ss_pred EeCCCC--ceEEEEEC-CCCCcceEEeCCCCCEEEEEcc-CCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEE
Confidence 888754 23333332 2223346788998888887543 223689999998765 4434322 111 224588889999
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCC-CCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHR-ESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
|+.-.. +.+|.+++.++ ...+.+.... .-....++.++++.+++.... ..+|..++..
T Consensus 179 Y~~D~~----~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~--~~~V~~~~~~ 237 (316)
T 1ijq_A 179 YWVDSK----LHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFEDKVFWTDII--NEAIFSANRL 237 (316)
T ss_dssp EEEETT----TTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEETTEEEEEETT--TTEEEEEETT
T ss_pred EEEECC----CCeEEEEecCC-CceEEEeecCCccCCcEEEEEECCEEEEEECC--CCeEEEEeCC
Confidence 887543 35899999976 3333343321 122355777788887776543 3467766653
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00014 Score=71.62 Aligned_cols=96 Identities=11% Similarity=-0.062 Sum_probs=62.8
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
+..|.||++||..+.. ..|......|. +.|+.+|.++.. ...+++++.+.+..++..-. .
T Consensus 22 ~~~~~l~~~hg~~~~~--~~~~~~~~~L~---~~v~~~d~~~~~--------------~~~~~~~~a~~~~~~i~~~~-~ 81 (283)
T 3tjm_A 22 SSERPLFLVHPIEGST--TVFHSLASRLS---IPTYGLQCTRAA--------------PLDSIHSLAAYYIDCIRQVQ-P 81 (283)
T ss_dssp SSSCCEEEECCTTCCS--GGGHHHHHHCS---SCEEEECCCTTS--------------CCSCHHHHHHHHHHHHTTTC-C
T ss_pred CCCCeEEEECCCCCCH--HHHHHHHHhcC---ceEEEEecCCCC--------------CCCCHHHHHHHHHHHHHHhC-C
Confidence 3456789999976543 33554444443 899999986421 12345666555544443321 2
Q ss_pred CCeEEEEeeChhHHHHHHHHhhC---CCcee---EEEecCCc
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMR---PDLFK---AAVAAVPF 519 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~---p~~~~---a~v~~~~~ 519 (648)
.+++.++||||||.++..++.+. |+.+. .+|+..+.
T Consensus 82 ~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~~ 123 (283)
T 3tjm_A 82 EGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGS 123 (283)
T ss_dssp SSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESCC
T ss_pred CCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcCC
Confidence 36899999999999999888754 77787 77776553
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.045 Score=54.57 Aligned_cols=159 Identities=9% Similarity=0.082 Sum_probs=90.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCe---------------------EEEEEEEECCCCCeeeccccC---ccceeEEecCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDE---------------------IYTVYVIDIETGTPVGKPLVG---VTASVEWAGNE 137 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e---------------------~~~l~v~dl~~g~~~~~~~~~---~~~~~~WspDg 137 (648)
.+.+++++|||+.++.. ..+.. ..+|+++|.++|+.+.....+ ....++++|||
T Consensus 25 ~v~~va~d~~G~l~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFH--RGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CEEEEEECTTCCEEEEE--CTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred CceEEEECCCCCEEEEe--CCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 46788999999876433 22210 026999999988876422111 23458899999
Q ss_pred eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEee--------cCCCeEEEEEeCC-CCcEEEEEEccccccEEEEEECCC
Q 006375 138 ALVYITMDEILRPDKAWLHKLEADQSNDICLYHE--------KDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSK 208 (648)
Q Consensus 138 ~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~dl~~ 208 (648)
.+|++.. ....|++++..+... ....+.. .....-.+++++| +|+ |++. +......|++++.++
T Consensus 103 ~l~v~d~----~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~-d~~~~~~I~~~~~~g 175 (329)
T 3fvz_A 103 NYWVTDV----ALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVS-DGYCNSRIVQFSPSG 175 (329)
T ss_dssp CEEEEET----TTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEE-ECSSCCEEEEECTTS
T ss_pred CEEEEEC----CCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEE-eCCCCCeEEEEcCCC
Confidence 8655432 235688888765411 2222321 1111344788999 554 4443 222457899999554
Q ss_pred CCceeEeeeccc-----------ceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 209 PEELRVLTPRVV-----------GVDTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 209 ~~~~~~l~~~~~-----------~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
.. ...+..... -....++++++.||+.... +.+|.+++.++
T Consensus 176 ~~-~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~----~~~I~~~~~~~ 227 (329)
T 3fvz_A 176 KF-VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE----NGRIQCFKTDT 227 (329)
T ss_dssp CE-EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT----TTEEEEEETTT
T ss_pred CE-EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC----CCEEEEEECCC
Confidence 32 333321110 1123478887777776543 35788888874
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.017 Score=55.40 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=101.4
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
...++.++|||+ |.++.+..+ ..|++++..++......... ....+++++||.++++.. ...|++++..
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-----~~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMY---GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-----NNRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSS---CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-----TTEEEEECTT
T ss_pred CccceEECCCCC-EEEEccCCC---CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-----CCEEEEEeCC
Confidence 455788999998 333143322 37888888766544322221 234589999988655432 3468888876
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccc-eeeeEeecCCEEEEEe
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITR 237 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~~ 237 (648)
+.. ...+.........++.+++||+ |++... ....|++++..+.. ...... .... ....++++|+ ||+..
T Consensus 96 ~~~---~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~~~~g~-l~v~~ 167 (270)
T 1rwi_B 96 SNN---QTVLPFDGLNYPEGLAVDTQGA-VYVADR--GNNRVVKLAAGSKT-QTVLPFTGLNDPDGVAVDNSGN-VYVTD 167 (270)
T ss_dssp CSC---CEECCCCSCSSEEEEEECTTCC-EEEEEG--GGTEEEEECTTCCS-CEECCCCSCCSCCCEEECTTCC-EEEEE
T ss_pred Cce---EeeeecCCcCCCcceEECCCCC-EEEEEC--CCCEEEEEECCCce-eEeeccccCCCceeEEEeCCCC-EEEEE
Confidence 642 1222211112344678899997 444322 34578888765543 222211 1111 2245778886 76665
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcC
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~ 298 (648)
.. +..|++++.++. ... .........+.++.++++ .+++.... ...+.+++.+
T Consensus 168 ~~----~~~i~~~~~~~~-~~~-~~~~~~~~~p~~i~~d~~g~l~v~~~~--~~~v~~~~~~ 221 (270)
T 1rwi_B 168 TD----NNRVVKLEAESN-NQV-VLPFTDITAPWGIAVDEAGTVYVTEHN--TNQVVKLLAG 221 (270)
T ss_dssp GG----GTEEEEECTTTC-CEE-ECCCSSCCSEEEEEECTTCCEEEEETT--TSCEEEECTT
T ss_pred CC----CCEEEEEecCCC-ceE-eecccCCCCceEEEECCCCCEEEEECC--CCcEEEEcCC
Confidence 43 247888887652 221 221111133566777776 44444432 2356777665
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.56 E-value=0.012 Score=57.95 Aligned_cols=241 Identities=10% Similarity=0.076 Sum_probs=124.1
Q ss_pred eeEEeCCCCCEEEEEEe---CCCCeEEEEEEEECCCCCeeeccc------cCccceeEEecC-CeEEEEEeCCCCCCceE
Q 006375 84 GCFQVSPDNKLVAYAED---TKGDEIYTVYVIDIETGTPVGKPL------VGVTASVEWAGN-EALVYITMDEILRPDKA 153 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~---~~G~e~~~l~v~dl~~g~~~~~~~------~~~~~~~~WspD-g~l~y~~~~~~~~~~~l 153 (648)
.++.|+|||+.++ +.. ..+.....|+++|+++++...... ......+.+++| |.+++.... ..|
T Consensus 21 ~~~~~~~~g~l~~-~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-----~~l 94 (314)
T 1pjx_A 21 EGPVFDKNGDFYI-VAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-----LGL 94 (314)
T ss_dssp EEEEECTTSCEEE-EETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----TEE
T ss_pred cCceECCCCCEEE-EEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----CCE
Confidence 4789999997543 310 001112379999998888653222 122345889999 687665431 258
Q ss_pred EEEECCCCCCCcEEE-EeecC---CCeEEEEEeCCCCcEEEEEEccc-------------cccEEEEEECCCCCceeEee
Q 006375 154 WLHKLEADQSNDICL-YHEKD---DIYSLGLQASESKKFLFIASESK-------------ITRFVFYLDVSKPEELRVLT 216 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~-~~~~~---~~~~~~~~~s~Dg~~l~~~~~~~-------------~~~~l~~~dl~~~~~~~~l~ 216 (648)
++++.. + +...+ ..... ......+.+++||+.. +..... ....||+++.+ ++ ...+.
T Consensus 95 ~~~d~~-g--~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~ 168 (314)
T 1pjx_A 95 LVVQTD-G--TFEEIAKKDSEGRRMQGCNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQVD 168 (314)
T ss_dssp EEEETT-S--CEEECCSBCTTSCBCBCCCEEEECTTSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEEE
T ss_pred EEEeCC-C--CEEEEEeccCCCccccCCcCEEECCCCCEE-EEecCcccccccccccccCCCCeEEEECCC-CC-EEEec
Confidence 888876 4 22222 11111 1123367889999754 433221 12689999987 54 44443
Q ss_pred ecccc-eeeeEe----ecCCEEEEEeccCCCCCcEEEEEeCCCCCcc---eeE--ecCCCCcccceEEEeCCE-EEEEEe
Q 006375 217 PRVVG-VDTAAS----HRGNHFFITRRSDELFNSELLACPVDNTSET---TVL--IPHRESVKLQDIQLFIDH-LAVYER 285 (648)
Q Consensus 217 ~~~~~-~~~~~s----~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~-l~~~~~ 285 (648)
..... ....++ ++|+.||+.... +.+|++++.+..+.. ..+ ++......+.++.++.+. +++...
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETP----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETT----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECC----CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 32211 224578 888877776543 246877776421211 111 211110235566776654 444433
Q ss_pred cCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCC
Q 006375 286 EGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDM 354 (648)
Q Consensus 286 ~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~ 354 (648)
.+ ..|.+++.+. +... ..+..+.. .+.++..+++++.+++.... ...++++++..
T Consensus 245 ~~--~~i~~~d~~~-g~~~------~~~~~~~~--~~~~i~~~~dg~~l~v~~~~---~~~l~~~~~~~ 299 (314)
T 1pjx_A 245 GS--SHIEVFGPDG-GQPK------MRIRCPFE--KPSNLHFKPQTKTIFVTEHE---NNAVWKFEWQR 299 (314)
T ss_dssp TT--TEEEEECTTC-BSCS------EEEECSSS--CEEEEEECTTSSEEEEEETT---TTEEEEEECSS
T ss_pred CC--CEEEEEcCCC-CcEe------EEEeCCCC--CceeEEECCCCCEEEEEeCC---CCeEEEEeCCC
Confidence 32 3566666542 2211 12333211 12223345666656554322 25788888764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.55 E-value=0.045 Score=54.41 Aligned_cols=195 Identities=7% Similarity=0.032 Sum_probs=118.0
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-ccc--CccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV--GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~--~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
..++.|.+.++.|.|+ |..+ ..|+.++++++..... ... ....++++.+.+ .||++-. ....|.+.++
T Consensus 37 ~~~ld~d~~~~~lyw~-D~~~---~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~----~~~~I~~~~~ 108 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWS-DVSE---EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS----ETNRIEVSNL 108 (318)
T ss_dssp EEEEEEEGGGTEEEEE-ETTT---TEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEET----TTTEEEEEET
T ss_pred cEEEEEEeCCCEEEEE-ECCC---CcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEEC----CCCEEEEEEC
Confidence 4467899988877655 4433 2788999987742211 111 122347888766 7766532 2356888888
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccc-eeeeEeecCCEEEEE
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFIT 236 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~ 236 (648)
++. ....+... ....-.++++.|++.+|+++.. .....|+++++++.. .+.+.. .... ....++++++.||+.
T Consensus 109 dG~--~~~~l~~~-~~~~P~giavdp~~g~ly~td~-~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 109 DGS--LRKVLFWQ-ELDQPRAIALDPSSGFMYWTDW-GEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp TSC--SCEEEECS-SCSSEEEEEEEGGGTEEEEEEC-SSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CCC--cEEEEEeC-CCCCccEEEEeCCCCEEEEEec-CCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEE
Confidence 764 23334322 2223346778888788877542 335789999998765 344332 2111 224588889999887
Q ss_pred eccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 237 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
-. .+.+|.++++++ ...+.++... .....++.++.+.+++.... ..+|..++..
T Consensus 184 D~----~~~~I~~~d~dG-~~~~~~~~~~-~~~P~glav~~~~lywtd~~--~~~V~~~~~~ 237 (318)
T 3sov_A 184 DA----KLNFIHKSNLDG-TNRQAVVKGS-LPHPFALTLFEDILYWTDWS--THSILACNKY 237 (318)
T ss_dssp ET----TTTEEEEEETTS-CSCEEEECSC-CSCEEEEEEETTEEEEEETT--TTEEEEEETT
T ss_pred EC----CCCEEEEEcCCC-CceEEEecCC-CCCceEEEEeCCEEEEEecC--CCeEEEEECC
Confidence 44 346899999976 3333344322 23456778888888777443 3467777764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.05 Score=51.86 Aligned_cols=215 Identities=11% Similarity=0.099 Sum_probs=122.8
Q ss_pred CceEEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccccC--ccceeEEecCCeEE
Q 006375 64 PEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVG--VTASVEWAGNEALV 140 (648)
Q Consensus 64 ~~~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~~~--~~~~~~WspDg~l~ 140 (648)
.-++.++.-.++.-.+ .+++++++||++.|....+.. ..|+.+|++ |+.+. ..+.+ -..++++.++|.++
T Consensus 12 ~y~~~~~~~~l~g~~~--~lSGla~~~~~~~L~aV~d~~----~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~ 84 (255)
T 3qqz_A 12 NYHATIDGKEIAGITN--NISSLTWSAQSNTLFSTINKP----AAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFV 84 (255)
T ss_dssp TCEEEEEEEECTTCCS--CEEEEEEETTTTEEEEEEETT----EEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEE
T ss_pred ceEEEEeceECCCccc--CcceeEEeCCCCEEEEEECCC----CeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEE
Confidence 4467777433332112 588999999998887777653 479999998 66553 23332 23458898888654
Q ss_pred EEEeCCCCCCceEEEEECCCCCCCc-EEEEeec-----CCCeEEEEEeCCCCcEEEEEEccccccEEEEEE--CCCCCce
Q 006375 141 YITMDEILRPDKAWLHKLEADQSND-ICLYHEK-----DDIYSLGLQASESKKFLFIASESKITRFVFYLD--VSKPEEL 212 (648)
Q Consensus 141 y~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~-----~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d--l~~~~~~ 212 (648)
.+ . .+..+|+.++++....-. .....-+ ...-+-+++|+|+++.|++.. .+....||.++ +.+.. .
T Consensus 85 vs-~---E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~-E~~p~~i~~~~g~~~~~~-l 158 (255)
T 3qqz_A 85 IS-D---ERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK-EKNPIEVYKVNGLLSSNE-L 158 (255)
T ss_dssp EE-E---TTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE-ESSSEEEEEEESTTCSSC-C
T ss_pred EE-E---CCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE-CcCCceEEEEcccccCCc-e
Confidence 43 3 223668888887653201 1111100 011235789999998887744 44456899998 22222 3
Q ss_pred eEeee-------cccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcce-eEecCC------CCcccceEEEeC
Q 006375 213 RVLTP-------RVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETT-VLIPHR------ESVKLQDIQLFI 277 (648)
Q Consensus 213 ~~l~~-------~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~ 277 (648)
+.+.. ...+ ....+.|..+.||+++... ..|+.+|.++ .... +.+... .-.+.+++.++.
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s----~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~ 233 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHES----RALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDA 233 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTT----TEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECT
T ss_pred eeecchhhccccccCCceeEEEcCCCCeEEEEECCC----CeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECC
Confidence 33211 0011 1234778888899998852 5788888875 2222 222211 123568888887
Q ss_pred CEEEEEEecCCeeEEEEEEcC
Q 006375 278 DHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 278 ~~l~~~~~~~~~~~l~v~~~~ 298 (648)
++-++..++. ..++++...
T Consensus 234 ~G~lyIvsE~--n~~y~f~~~ 252 (255)
T 3qqz_A 234 SGNIYIVSEP--NRFYRFTPQ 252 (255)
T ss_dssp TCCEEEEETT--TEEEEEEC-
T ss_pred CCCEEEEcCC--ceEEEEEec
Confidence 6544444443 366666543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0085 Score=63.94 Aligned_cols=202 Identities=9% Similarity=-0.055 Sum_probs=108.0
Q ss_pred eEEeCC-----CCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccccCc--cceeEE-e-cCC-eEEEEEeCC-----C-
Q 006375 85 CFQVSP-----DNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLVGV--TASVEW-A-GNE-ALVYITMDE-----I- 147 (648)
Q Consensus 85 ~~~~SP-----DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~~~~--~~~~~W-s-pDg-~l~y~~~~~-----~- 147 (648)
.+.+|. ||++|- ..+..+ .+|.++|+++.+... ..+++. ..++++ + ||+ ++|...... .
T Consensus 89 h~~~s~t~g~~DG~~lf-Vnd~~~---~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFLF-MNDKAN---TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp CEEEEEETTEEEEEEEE-EEETTT---TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred ccccCCCCCCcCCCEEE-EEcCCC---CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence 367777 999864 455444 489999999988543 134332 234676 5 999 775553211 0
Q ss_pred -------CCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcccc-----------------------
Q 006375 148 -------LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI----------------------- 197 (648)
Q Consensus 148 -------~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~----------------------- 197 (648)
.....+-.+|..+.+...+... ...+ -.+..||||+++++++....
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~V-gg~p---d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~ 240 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNL---DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE 240 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEEEEEEE-SSCC---CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred cccccccccCceEEEEECCCCeEEEEEEe-CCCc---cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence 1123466777766421111111 1122 24568999999998874320
Q ss_pred ------------ccEEEEEECCC--CCc-eeEeeecccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCC------
Q 006375 198 ------------TRFVFYLDVSK--PEE-LRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTS------ 256 (648)
Q Consensus 198 ------------~~~l~~~dl~~--~~~-~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~------ 256 (648)
-+.+-++|..+ ++. ...+.-...-.-..+||||++++.. +. .. -++.++|+++..
T Consensus 241 ~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~-~~-~s--~~VsVid~~~~~~~~~~~ 316 (595)
T 1fwx_A 241 IEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVA-GK-LS--PTVTVLDVTRFDAVFYEN 316 (595)
T ss_dssp HHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEE-CT-TS--SBEEEEEGGGHHHHHHSC
T ss_pred eeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEe-CC-CC--CeEEEEECcccccccccc
Confidence 02366777776 331 1222222222334599999976554 43 22 367777776411
Q ss_pred --cceeEec-CCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 257 --ETTVLIP-HRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 257 --~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
....++. ...+.....+.+++++ .++....-.+++.+|+++.
T Consensus 317 l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 317 ADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred cCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 0001111 1112234556666665 3333344456788888874
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00017 Score=75.29 Aligned_cols=140 Identities=11% Similarity=0.055 Sum_probs=78.2
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchh----------------HHHHHHCCCEEE
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSS----------------RLSLLDRGFIFA 439 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~----------------~~~l~~~G~~v~ 439 (648)
...=.++..++..+..|++. ... .....|+||++|||+|.+....+..+ ...|. +-..++
T Consensus 21 ~~sGyv~v~~~~~lfy~f~~-s~~--~~~~~Pl~lwlnGGPG~Ss~~g~~~e~GP~~~~~~~~~l~~n~~sw~-~~~~~l 96 (452)
T 1ivy_A 21 QYSGYLKSSGSKHLHYWFVE-SQK--DPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWN-LIANVL 96 (452)
T ss_dssp EEEEEEECSTTEEEEEEEEC-CSS--CGGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGG-GSSEEE
T ss_pred eeEEEEeeCCCCeEEEEEEE-cCC--CCCCCCEEEEECCCCcHHHHHHHHHhcCCcEEeCCCceeeeCCCccc-ccccEE
Confidence 33334454556777777443 322 12457999999999987543211000 01222 357899
Q ss_pred EEcc-CCCCCCChhhhhcc-cccCCCCcHhHH-HHHHHHHHHcCCCCCCeEEEEeeChhHHHHH----HHHhhCCCceeE
Q 006375 440 IAQI-RGGGELGRQWYENG-KFLKKKNTFTDF-IACAEYLIKNCYCTKEKLCIEGRSAGGLLIG----AVLNMRPDLFKA 512 (648)
Q Consensus 440 ~~~~-rG~g~~g~~~~~~~-~~~~~~~~~~D~-~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~----~~~~~~p~~~~a 512 (648)
.+|. +|.| +... ... .........+|+ ....+|+.........++.|+|.|+||..+. .++...+-.+++
T Consensus 97 fiDqP~GtG-fS~~--~~~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~l~g 173 (452)
T 1ivy_A 97 YLESPAGVG-FSYS--DDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQG 173 (452)
T ss_dssp EECCSTTST-TCEE--SSCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEE
T ss_pred EEecCCCCC-cCCc--CCCCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccccce
Confidence 9996 5655 3221 100 000001122333 3344455553333457899999999999443 333333456899
Q ss_pred EEecCCcccc
Q 006375 513 AVAAVPFVDV 522 (648)
Q Consensus 513 ~v~~~~~~d~ 522 (648)
+++..|++|.
T Consensus 174 ~~ign~~~d~ 183 (452)
T 1ivy_A 174 LAVGNGLSSY 183 (452)
T ss_dssp EEEESCCSBH
T ss_pred EEecCCccCh
Confidence 9999998874
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.037 Score=54.06 Aligned_cols=230 Identities=10% Similarity=0.068 Sum_probs=120.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCC---eeec--cccCccceeEEecCCeEEEEEeCCCCCCceEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT---PVGK--PLVGVTASVEWAGNEALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~---~~~~--~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~ 156 (648)
.+..+.|||||++|+.... +| .|.++++.... .... .-......+.| ++.++++... ...|..+
T Consensus 61 ~v~~~~~~~~~~~l~~~~~-dg----~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~----d~~i~~~ 129 (313)
T 3odt_A 61 FLNSVCYDSEKELLLFGGK-DT----MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSW----DKTAKVW 129 (313)
T ss_dssp CEEEEEEETTTTEEEEEET-TS----CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEET----TSEEEEE
T ss_pred cEEEEEECCCCCEEEEecC-CC----eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeC----CCCEEEE
Confidence 4668899999999987754 33 57888876643 2211 11122344777 5533344432 2346666
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCC-CCcEEEEEEccccccEEEEEECCCCCceeEeee-cccce-eeeEeecCCEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGV-DTAASHRGNHF 233 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~~-~~~~s~dg~~l 233 (648)
+ .. +....+.... .....+.+++ +++.++..+. ...|+++|.... ...+.. ....+ ...++|++. +
T Consensus 130 d--~~--~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~~~~~~-~ 198 (313)
T 3odt_A 130 K--EG--SLVYNLQAHN-ASVWDAKVVSFSENKFLTASA---DKTIKLWQNDKV--IKTFSGIHNDVVRHLAVVDDGH-F 198 (313)
T ss_dssp E--TT--EEEEEEECCS-SCEEEEEEEETTTTEEEEEET---TSCEEEEETTEE--EEEECSSCSSCEEEEEEEETTE-E
T ss_pred c--CC--cEEEecccCC-CceeEEEEccCCCCEEEEEEC---CCCEEEEecCce--EEEEeccCcccEEEEEEcCCCe-E
Confidence 6 22 2233333332 2334556666 8888776543 245777773321 222322 22222 345889887 4
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCcee
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 313 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i 313 (648)
+..+.. ..|...|+....... .+... ...+..+.+.++..++....++ .+.+|++.. +... ..+
T Consensus 199 ~~~~~d-----g~i~i~d~~~~~~~~-~~~~~-~~~i~~~~~~~~~~l~~~~~dg--~v~iwd~~~-~~~~------~~~ 262 (313)
T 3odt_A 199 ISCSND-----GLIKLVDMHTGDVLR-TYEGH-ESFVYCIKLLPNGDIVSCGEDR--TVRIWSKEN-GSLK------QVI 262 (313)
T ss_dssp EEEETT-----SEEEEEETTTCCEEE-EEECC-SSCEEEEEECTTSCEEEEETTS--EEEEECTTT-CCEE------EEE
T ss_pred EEccCC-----CeEEEEECCchhhhh-hhhcC-CceEEEEEEecCCCEEEEecCC--EEEEEECCC-Ccee------EEE
Confidence 433332 478888887633222 33322 2236677777664445555544 578888764 2211 122
Q ss_pred ecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 314 EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 314 ~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
..+. ..+..+.+++++. ++ +.+ .-+.++.+++.+++
T Consensus 263 ~~~~--~~i~~~~~~~~~~-~~-~~~---~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 263 TLPA--ISIWSVDCMSNGD-II-VGS---SDNLVRIFSQEKSR 298 (313)
T ss_dssp ECSS--SCEEEEEECTTSC-EE-EEE---TTSCEEEEESCGGG
T ss_pred eccC--ceEEEEEEccCCC-EE-EEe---CCCcEEEEeCCCCc
Confidence 2221 1233345556665 32 322 23568888888776
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0052 Score=70.83 Aligned_cols=193 Identities=10% Similarity=0.076 Sum_probs=111.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
.+..+.|||||++||.... +| +|++|+..+++.... .-......++|+| |.++++... ...|..+++.+
T Consensus 19 ~V~~lafspdg~~lAsgs~-Dg----~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~----D~~v~lWd~~~ 88 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATV-TG----EVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINA----KDTVYVLSLYS 88 (902)
T ss_dssp CEEEEEEETTTTEEEEEET-TS----EEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEET----TCEEEEEETTT
T ss_pred CcEEEEECCCCCEEEEEeC-CC----EEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEEC----cCeEEEEECCC
Confidence 4668899999999997754 33 799999987765432 1122345699999 743344432 24588889987
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEee------------ecccc-eeeeEe
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT------------PRVVG-VDTAAS 227 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~------------~~~~~-~~~~~s 227 (648)
+ +....+.. ......+.++||+++|+..+. +..|.++|+.++. ..... ..... ....|+
T Consensus 89 ~--~~~~~~~~--~~~V~~v~~sp~g~~l~sgs~---dg~V~lwd~~~~~-~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 89 Q--KVLTTVFV--PGKITSIDTDASLDWMLIGLQ---NGSMIVYDIDRDQ-LSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp C--SEEEEEEC--SSCEEEEECCTTCSEEEEEET---TSCEEEEETTTTE-EEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred C--cEEEEEcC--CCCEEEEEECCCCCEEEEEcC---CCcEEEEECCCCc-cccceeccccccccccccCCCCeEEEEEc
Confidence 6 22333332 234457889999999987554 3458889998765 32111 01111 234588
Q ss_pred ecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecC----------------CCCcccceEEEeCCE-EEEEEecCCee
Q 006375 228 HRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPH----------------RESVKLQDIQLFIDH-LAVYEREGGLQ 290 (648)
Q Consensus 228 ~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-l~~~~~~~~~~ 290 (648)
|++..++++... +..+ ..|+......+.+..+ .....+..+.+.++. .++....++
T Consensus 161 p~~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg-- 233 (902)
T 2oaj_A 161 PRDIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN-- 233 (902)
T ss_dssp TTEEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC--
T ss_pred cCCCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC--
Confidence 865444444433 2457 8888763222212111 001235566665542 334444444
Q ss_pred EEEEEEcCC
Q 006375 291 KITTYRLPA 299 (648)
Q Consensus 291 ~l~v~~~~~ 299 (648)
.+.+|++..
T Consensus 234 ~i~lWd~~~ 242 (902)
T 2oaj_A 234 SLVFWDANS 242 (902)
T ss_dssp CEEEEETTT
T ss_pred eEEEEECCC
Confidence 577888864
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.043 Score=55.46 Aligned_cols=160 Identities=11% Similarity=0.073 Sum_probs=88.2
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEE-------EEEeCC-------
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALV-------YITMDE------- 146 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~-------y~~~~~------- 146 (648)
+....++++++.++.+....+ .|.+||+.+++.... ........+.|+++. .+. |.-...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~----~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 136 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKE----VVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDD 136 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTT----EEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCC
T ss_pred eEEEEEcCCCCEEEEEECCcc----EEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEe
Confidence 345678999999987754333 899999999876532 222233346666654 111 000000
Q ss_pred ------------------CCCCceEEEEECCCCCC------C-------c-EEEEeecCCCeEEEEEeCCCCcEEEEEEc
Q 006375 147 ------------------ILRPDKAWLHKLEADQS------N-------D-ICLYHEKDDIYSLGLQASESKKFLFIASE 194 (648)
Q Consensus 147 ------------------~~~~~~l~~~~l~~~~~------~-------~-~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~ 194 (648)
......|..+++.++.. . . ...+..+ ......+.|+|||++|+..+.
T Consensus 137 ~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h-~~~v~~~~~s~~g~~l~s~s~ 215 (355)
T 3vu4_A 137 IRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH-TNPIKMVRLNRKSDMVATCSQ 215 (355)
T ss_dssp EEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCC-SSCEEEEEECTTSSEEEEEET
T ss_pred ccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc-CCceEEEEECCCCCEEEEEeC
Confidence 11223466666665420 0 0 2223222 223446889999998875433
Q ss_pred cccccEEEEEECCCCCceeEeee--cccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 195 SKITRFVFYLDVSKPEELRVLTP--RVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 195 ~~~~~~l~~~dl~~~~~~~~l~~--~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
+ ..-|.++|+.+++....+.. ....+ ...|+|+|+.|+..+.. ..|.+.++..
T Consensus 216 d--~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~iw~~~~ 271 (355)
T 3vu4_A 216 D--GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK-----WTLHVFEIFN 271 (355)
T ss_dssp T--CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT-----CEEEEEESSC
T ss_pred C--CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC-----CEEEEEEccC
Confidence 2 22388899998772333331 22222 34699999987766553 3566667654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0078 Score=61.19 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=41.4
Q ss_pred eEEeCCCCCEEEEEEe-----CCCCeEEEEEEEECCCCCeeec-ccc--------CccceeEEecCC-eEEEEE
Q 006375 85 CFQVSPDNKLVAYAED-----TKGDEIYTVYVIDIETGTPVGK-PLV--------GVTASVEWAGNE-ALVYIT 143 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~-----~~G~e~~~l~v~dl~~g~~~~~-~~~--------~~~~~~~WspDg-~l~y~~ 143 (648)
++.+||||++|..+.. ..|.....|.++|+++++.... .++ ..-..+++|||| ++|...
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan 142 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEc
Confidence 6899999999877652 1233457899999999987643 222 113469999999 665543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0073 Score=60.80 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=48.0
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEE--ecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEW--AGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~W--spDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++|+... .+| .|++||+.+++..... .......+.| +||+.++++...+ ..|+.+++
T Consensus 88 ~v~~~~~~~~~~~l~s~~-~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~vwd~ 158 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTAS-CDK----TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD----KTLKFWDT 158 (368)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETT----SEEEEECS
T ss_pred CEEEEEECcCCCEEEEEc-CCC----cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCC----CcEEEEEC
Confidence 467889999999998654 334 7999999998866432 2233456899 8888444444322 34677777
Q ss_pred CCC
Q 006375 159 EAD 161 (648)
Q Consensus 159 ~~~ 161 (648)
.++
T Consensus 159 ~~~ 161 (368)
T 3mmy_A 159 RSS 161 (368)
T ss_dssp SCS
T ss_pred CCC
Confidence 665
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.039 Score=55.03 Aligned_cols=194 Identities=10% Similarity=0.092 Sum_probs=96.3
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-eccc-----cCccceeEEecCCeEEEEEeCCCCCCceEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GKPL-----VGVTASVEWAGNEALVYITMDEILRPDKAWL 155 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-~~~~-----~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~ 155 (648)
.+..+.+||+ +||-.. .+| .|+++|+.++... ...+ .+....++|+||+.++.+...+ ..|.+
T Consensus 16 ~v~~~~~s~~--~las~~-~D~----~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D----~~v~i 84 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGS-TDR----KIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD----STVSI 84 (330)
T ss_dssp CEEEEEEETT--EEEEEE-SSS----CEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT----SCEEE
T ss_pred ceeeeccCCC--EEEEEc-CCC----EEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC----CcEEE
Confidence 3556788888 555443 334 7899999876422 1111 1224569999999444444422 23666
Q ss_pred EECCCCCC-----CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCC-CceeE---eeecccce-eee
Q 006375 156 HKLEADQS-----NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP-EELRV---LTPRVVGV-DTA 225 (648)
Q Consensus 156 ~~l~~~~~-----~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~-~~~~~---l~~~~~~~-~~~ 225 (648)
+++..... +....+..+ ......+.|+|||++|+..+. +..|+++|+... ...+. +......+ ...
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~sp~g~~las~s~---D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGH-ENEVKGVAWSNDGYYLATCSR---DKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEET---TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEcccCcCccccceeEEEEcCC-CCcEEEEEECCCCCEEEEEeC---CCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 66643210 112223222 233457899999998875443 345778888432 21222 22222223 345
Q ss_pred EeecCCEEEEEeccCCCCCcEEEEEeCCCCCcce-eEecCCCCcccceEEEeCC---EEEEEEecCCeeEEEEEEcC
Q 006375 226 ASHRGNHFFITRRSDELFNSELLACPVDNTSETT-VLIPHRESVKLQDIQLFID---HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 226 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~l~v~~~~ 298 (648)
|+|++..|+-.+.. ..|...+........ ..+.... ..+..+.+.++ ..++....++ .+.+|++.
T Consensus 161 ~~p~~~~l~s~s~D-----~~i~iW~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~D~--~v~iw~~~ 229 (330)
T 2hes_X 161 WHPSEALLASSSYD-----DTVRIWKDYDDDWECVAVLNGHE-GTVWSSDFDKTEGVFRLCSGSDDS--TVRVWKYM 229 (330)
T ss_dssp ECSSSSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCS-SCEEEEEECCSSSSCEEEEEETTS--CEEEEEEE
T ss_pred ECCCCCEEEEEcCC-----CeEEEEECCCCCeeEEEEccCCC-CcEEEEEecCCCCeeEEEEEeCCC--eEEEEEec
Confidence 89999876555443 234444443211111 1222222 23455555543 2444555555 35556654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0094 Score=59.49 Aligned_cols=152 Identities=9% Similarity=0.001 Sum_probs=91.0
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC---------CCeeec-cccCccceeEEecCCeEEEEEeCCCCCCc
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET---------GTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPD 151 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~---------g~~~~~-~~~~~~~~~~WspDg~l~y~~~~~~~~~~ 151 (648)
.+..+.|+| +++|+.... +| .|+++|+.+ ++.... ........++|+|++ ++. ... ..
T Consensus 103 ~v~~l~~~~-~~~l~s~~~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~-~~~----d~ 170 (342)
T 1yfq_A 103 GICRICKYG-DDKLIAASW-DG----LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIV-GMN----NS 170 (342)
T ss_dssp CEEEEEEET-TTEEEEEET-TS----EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEE-EES----TT
T ss_pred ceEEEEeCC-CCEEEEEcC-CC----eEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-EEE-EeC----CC
Confidence 466889999 888876543 33 789999886 554321 223334569999987 433 332 23
Q ss_pred eEEEEECCC-CCCCcEEEEeecCCCeEEEEEeCC-CCcEEEEEEccccccEEEEEECCCC------CceeEeeeccc---
Q 006375 152 KAWLHKLEA-DQSNDICLYHEKDDIYSLGLQASE-SKKFLFIASESKITRFVFYLDVSKP------EELRVLTPRVV--- 220 (648)
Q Consensus 152 ~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~dl~~~------~~~~~l~~~~~--- 220 (648)
.|+.+++.+ ........ ..........+.|+| |+++++..+. ...+.+++++.. +....+.....
T Consensus 171 ~i~i~d~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
T 1yfq_A 171 QVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQEGYACSSI---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246 (342)
T ss_dssp EEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGGCEEEEEET---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTT
T ss_pred eEEEEECCccccccceee-ecCCCCceeEEEECCCCCCEEEEEec---CCcEEEEEEcCCCcccccccceeeeccccccc
Confidence 588899887 43222222 222233345788999 9998876544 345666666554 32233332211
Q ss_pred ------ce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 221 ------GV-DTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 221 ------~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
.+ ...|+|+|+.|+..+.. ..|...|+.+
T Consensus 247 ~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~ 282 (342)
T 1yfq_A 247 DTNLAYPVNSIEFSPRHKFLYTAGSD-----GIISCWNLQT 282 (342)
T ss_dssp CCSSCCCEEEEEECTTTCCEEEEETT-----SCEEEEETTT
T ss_pred ccccceeEEEEEEcCCCCEEEEecCC-----ceEEEEcCcc
Confidence 22 24589999877655443 3678888875
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0023 Score=63.41 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=87.2
Q ss_pred eeEEeCCCCCEEEEEEeC-CC-------------CeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCC-C
Q 006375 84 GCFQVSPDNKLVAYAEDT-KG-------------DEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDE-I 147 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~-~G-------------~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~-~ 147 (648)
..+.++|||+.. + .+. .| .....|+.+|.++|+............++|+||| .||+..... .
T Consensus 134 ~~i~~d~dG~l~-~-td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~ 211 (305)
T 3dr2_A 134 NDLIVARDGAIW-F-TDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQG 211 (305)
T ss_dssp CCEEECTTSCEE-E-ECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC--
T ss_pred CCEEECCCCCEE-E-eCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCcC
Confidence 358899999843 3 221 01 1135799999988876543211123458999999 666553321 0
Q ss_pred CCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEe
Q 006375 148 LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAAS 227 (648)
Q Consensus 148 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s 227 (648)
.....|+++++.++......++.........++.+++||+ |++.. ...|++++.++.. ...+.....-....++
T Consensus 212 ~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~----~~gv~~~~~~g~~-~~~~~~~~~~~~~~f~ 285 (305)
T 3dr2_A 212 HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSS----GTGVCVFDSDGQL-LGHIPTPGTASNCTFD 285 (305)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECC----SSEEEEECTTSCE-EEEEECSSCCCEEEEC
T ss_pred CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEec----CCcEEEECCCCCE-EEEEECCCceeEEEEe
Confidence 1135688888865421112233221122223567889998 44433 2359999986543 3333322222234577
Q ss_pred ecCCEEEEEeccCCCCCcEEEEEeC
Q 006375 228 HRGNHFFITRRSDELFNSELLACPV 252 (648)
Q Consensus 228 ~dg~~l~~~~~~~~~~~~~l~~~~~ 252 (648)
++++.||+.++. .|+++++
T Consensus 286 ~d~~~L~it~~~------~l~~~~~ 304 (305)
T 3dr2_A 286 QAQQRLFITGGP------CLWMLPL 304 (305)
T ss_dssp TTSCEEEEEETT------EEEEEEC
T ss_pred CCCCEEEEEcCC------eEEEEEC
Confidence 889989888764 5777654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.03 Score=53.81 Aligned_cols=200 Identities=10% Similarity=0.072 Sum_probs=110.3
Q ss_pred ceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCC
Q 006375 129 ASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 208 (648)
Q Consensus 129 ~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~ 208 (648)
.+++|+|||.||.+... .....|..+++.+++. .....-+...+..++.+ +|+.|++... ..+.++++|.++
T Consensus 24 ~Gl~~~~dg~Lyvstg~--~~~s~v~~iD~~tg~v--~~~i~l~~~~fgeGi~~--~g~~lyv~t~--~~~~v~viD~~t 95 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGL--YGRSSVRQVALQTGKV--ENIHKMDDSYFGEGLTL--LNEKLYQVVW--LKNIGFIYDRRT 95 (266)
T ss_dssp EEEEECSTTEEEEEECS--TTTCEEEEEETTTCCE--EEEEECCTTCCEEEEEE--ETTEEEEEET--TCSEEEEEETTT
T ss_pred ccEEEeCCCeEEEECCC--CCCCEEEEEECCCCCE--EEEEecCCCcceEEEEE--eCCEEEEEEe--cCCEEEEEECCC
Confidence 46999998866554321 2346799999998832 22221122234334444 5677776543 457899999988
Q ss_pred CCceeEeeecccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee-EecCCC--CcccceEEEeCCEEEEEEe
Q 006375 209 PEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRE--SVKLQDIQLFIDHLAVYER 285 (648)
Q Consensus 209 ~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~l~~~~~ 285 (648)
.+....+.-. ...-..+++||+++|+ ++. . .+|..+|.++...... .+.... -..+..+.+.++.+++..
T Consensus 96 ~~v~~~i~~g-~~~g~glt~Dg~~l~v-s~g---s-~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~- 168 (266)
T 2iwa_A 96 LSNIKNFTHQ-MKDGWGLATDGKILYG-SDG---T-SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANI- 168 (266)
T ss_dssp TEEEEEEECC-SSSCCEEEECSSSEEE-ECS---S-SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE-
T ss_pred CcEEEEEECC-CCCeEEEEECCCEEEE-ECC---C-CeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEec-
Confidence 7622233222 1223458899998875 452 2 4899999876433322 222111 112445666655554333
Q ss_pred cCCeeEEEEEEcCCCCCcccccCCCceeecCC----------C-eeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCC
Q 006375 286 EGGLQKITTYRLPAVGEPLKSLQGGKSVEFID----------P-VYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDM 354 (648)
Q Consensus 286 ~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~----------~-~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~ 354 (648)
.....+.+++..+ +... ..|.++. + .....++..++++++++++-..+ +.+|.+++.+
T Consensus 169 -~~~~~V~vID~~t-g~V~------~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~---~~v~~i~l~~ 237 (266)
T 2iwa_A 169 -WQTDCIARISAKD-GTLL------GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW---PKLFEIKLHL 237 (266)
T ss_dssp -TTSSEEEEEETTT-CCEE------EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC---SEEEEEEEEE
T ss_pred -CCCCeEEEEECCC-CcEE------EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC---CeEEEEEEec
Confidence 3345888888874 3322 2333321 0 00123556677888777665544 6677776643
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0076 Score=60.03 Aligned_cols=150 Identities=9% Similarity=0.010 Sum_probs=75.0
Q ss_pred EEeeEEeCCCCCEEE-------------EEE-eC------CCCeEEEEEEEECCCCCeeecc-ccC----ccceeEEecC
Q 006375 82 SVGCFQVSPDNKLVA-------------YAE-DT------KGDEIYTVYVIDIETGTPVGKP-LVG----VTASVEWAGN 136 (648)
Q Consensus 82 ~~~~~~~SPDG~~la-------------~~~-~~------~G~e~~~l~v~dl~~g~~~~~~-~~~----~~~~~~WspD 136 (648)
.+..+.+||||+.++ |+. +. .|+...+|+|||+++|+.+..- ... .....+|+||
T Consensus 158 ~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpd 237 (356)
T 2w18_A 158 QVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEM 237 (356)
T ss_dssp EEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEET
T ss_pred cEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCC
Confidence 445567788887744 333 11 1344569999999999865421 111 1223589999
Q ss_pred C-eEEEEEeCC-------CCCCceEEEEECCCCCCCcEEEEe--ecCC--CeEEEEEeCCCCcEEEEEEccccccEEEEE
Q 006375 137 E-ALVYITMDE-------ILRPDKAWLHKLEADQSNDICLYH--EKDD--IYSLGLQASESKKFLFIASESKITRFVFYL 204 (648)
Q Consensus 137 g-~l~y~~~~~-------~~~~~~l~~~~l~~~~~~~~~~~~--~~~~--~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 204 (648)
| .++....+. ......+..++..++ +...++. -++. ..++.... ++..++-.+ .+..|.++
T Consensus 238 G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg--k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS---~DgTIkIW 310 (356)
T 2w18_A 238 GLLFIVLSHPCAKESESLRSPVFQLIVINPKTT--LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAIL---TSGTIAIW 310 (356)
T ss_dssp TEEEEEEC------------CCEEEEEEETTTT--EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEE---TTSCEEEE
T ss_pred CCEEEEeccCCCcceeeccCCCcEEEEEECCCC--EEEEEEEeeccCCCcceeEcccc--CCCEEEEEc---CCCcEEEE
Confidence 9 554322211 123345666676655 2211211 0110 11222222 133333222 23468899
Q ss_pred ECCCCCceeEeeecccc-ee-eeEeecCCEEEEEec
Q 006375 205 DVSKPEELRVLTPRVVG-VD-TAASHRGNHFFITRR 238 (648)
Q Consensus 205 dl~~~~~~~~l~~~~~~-~~-~~~s~dg~~l~~~~~ 238 (648)
|+.+++....+...... .. ..|||||+.|+-.+.
T Consensus 311 Dl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~ 346 (356)
T 2w18_A 311 DLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK 346 (356)
T ss_dssp ETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred ECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence 99998723334333333 22 469999997765544
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0033 Score=61.77 Aligned_cols=152 Identities=13% Similarity=0.088 Sum_probs=86.3
Q ss_pred eeEEeCCCCCEEEEEEeCCCC-------------eEEEEEEEECCCCCeeec-cccCccceeEEecCCeEEEEEeCCCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGD-------------EIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILR 149 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~-------------e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg~l~y~~~~~~~~ 149 (648)
..+.++|||+.++ +-...|. ....|+.++.+ ++.... ........++|+|||.++++.. .
T Consensus 118 ~~i~~d~~G~l~v-td~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~----~ 191 (296)
T 3e5z_A 118 NDVCLAPDGSLWF-SDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDT----G 191 (296)
T ss_dssp CCEEECTTSCEEE-EECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEET----T
T ss_pred CCEEECCCCCEEE-ECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeC----C
Confidence 3588999998543 2110010 12378888887 554322 1112234699999994435432 2
Q ss_pred CceEEEEECC-CCCC-CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeE-
Q 006375 150 PDKAWLHKLE-ADQS-NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAA- 226 (648)
Q Consensus 150 ~~~l~~~~l~-~~~~-~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~- 226 (648)
...|+++++. ++.. ....++ ........++.+++||+ |++.. ...|++++.++.. ...+.....-....+
T Consensus 192 ~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~-l~v~~----~~~v~~~~~~g~~-~~~~~~~~~~~~~~f~ 264 (296)
T 3e5z_A 192 DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGL-IWASA----GDGVHVLTPDGDE-LGRVLTPQTTSNLCFG 264 (296)
T ss_dssp TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSC-EEEEE----TTEEEEECTTSCE-EEEEECSSCCCEEEEE
T ss_pred CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCC-EEEEc----CCeEEEECCCCCE-EEEEECCCCceeEEEE
Confidence 3468888886 3311 112344 22222223568899997 44433 4679999987543 343432222222346
Q ss_pred eecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 227 SHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 227 s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
+++++.||+.++. .|++++.++
T Consensus 265 ~~d~~~L~v~t~~------~l~~~~~~~ 286 (296)
T 3e5z_A 265 GPEGRTLYMTVST------EFWSIETNV 286 (296)
T ss_dssp STTSCEEEEEETT------EEEEEECSC
T ss_pred CCCCCEEEEEcCC------eEEEEEccc
Confidence 5888888888763 689988865
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.054 Score=51.50 Aligned_cols=156 Identities=12% Similarity=0.171 Sum_probs=90.0
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
....++.++ || .|..+.-..| ...|.++|+++|+.+.. .++.......-++++ +||... .+...++.+|.
T Consensus 43 ~ftqGL~~~-~~-~LyestG~~g--~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~lt----w~~~~v~v~D~ 114 (262)
T 3nol_A 43 AFTEGFFYR-NG-YFYESTGLNG--RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLT----WKNGLGFVWNI 114 (262)
T ss_dssp CEEEEEEEE-TT-EEEEEEEETT--EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEE----SSSSEEEEEET
T ss_pred cccceEEEE-CC-EEEEECCCCC--CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEE----eeCCEEEEEEC
Confidence 344577888 66 4444433334 67999999999997743 333322223345567 776553 44567999999
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc--e----eeeEeecCCE
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG--V----DTAASHRGNH 232 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~--~----~~~~s~dg~~ 232 (648)
.+... ..-+.-....+ ..++||+.|+++ + +++.|+.+|.++.+....+.-...+ + +..+. +| .
T Consensus 115 ~t~~~--~~ti~~~~eG~----glt~dg~~L~~S-d--Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~ 183 (262)
T 3nol_A 115 RNLRQ--VRSFNYDGEGW----GLTHNDQYLIMS-D--GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-E 183 (262)
T ss_dssp TTCCE--EEEEECSSCCC----CEEECSSCEEEC-C--SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred ccCcE--EEEEECCCCce----EEecCCCEEEEE-C--CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-E
Confidence 88732 22222222223 345788887753 3 3578999999987722222211111 1 12343 44 6
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCcce
Q 006375 233 FFITRRSDELFNSELLACPVDNTSETT 259 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~~~ 259 (648)
||..... . -.|+++|.+++....
T Consensus 184 lyan~w~---~-~~I~vIDp~tG~V~~ 206 (262)
T 3nol_A 184 IFANVWQ---T-NKIVRIDPETGKVTG 206 (262)
T ss_dssp EEEEETT---S-SEEEEECTTTCBEEE
T ss_pred EEEEEcc---C-CeEEEEECCCCcEEE
Confidence 7755443 2 379999988744333
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0076 Score=64.69 Aligned_cols=245 Identities=10% Similarity=0.018 Sum_probs=122.0
Q ss_pred EEeeEEeCCCC---------CEEEEEEeCC--------------CCeEEEEEEEECCCCCeee---ccc---cCccceeE
Q 006375 82 SVGCFQVSPDN---------KLVAYAEDTK--------------GDEIYTVYVIDIETGTPVG---KPL---VGVTASVE 132 (648)
Q Consensus 82 ~~~~~~~SPDG---------~~la~~~~~~--------------G~e~~~l~v~dl~~g~~~~---~~~---~~~~~~~~ 132 (648)
.+..+.|+|++ ++||.+.... ++...+|.|||+++++... ..+ .+....++
T Consensus 135 ~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~ 214 (524)
T 2j04_B 135 LVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLK 214 (524)
T ss_dssp --CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEE
T ss_pred ceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEE
Confidence 45677888887 7888876432 3344678999998876421 111 22344599
Q ss_pred EecC------CeEEEEEeCCCCCCceEEEEECCCCCCC---------cEEEEeecCCCeEEEEEeCCCCcEEEEEEcccc
Q 006375 133 WAGN------EALVYITMDEILRPDKAWLHKLEADQSN---------DICLYHEKDDIYSLGLQASESKKFLFIASESKI 197 (648)
Q Consensus 133 WspD------g~l~y~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~ 197 (648)
|+|+ +.++.+...+ ..|.++++.++... ....+..+ ......+.|++++ .|+..+ .
T Consensus 215 wsp~~~~~~~~~~LAs~s~D----gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h-~~~v~sv~~s~~~-~lasgs---~ 285 (524)
T 2j04_B 215 WHEGCHAPHLVGCLSFVSQE----GTINFLEIIDNATDVHVFKMCEKPSLTLSLA-DSLITTFDFLSPT-TVVCGF---K 285 (524)
T ss_dssp ECSSCCCSSSSCEEEEEETT----SCEEEEECCCCSSSSSEEECCCSCSEEECCT-TTCEEEEEESSSS-EEEEEE---T
T ss_pred ECCCCCCCCCCceEEEEecC----CeEEEEEcCCCccccccceeecCceEEEEcC-CCCEEEEEecCCC-eEEEEe---C
Confidence 9997 3455555432 23777777655211 11122222 2344578899875 444332 3
Q ss_pred ccEEEEEECCCCC-ceeEeeeccccee-e--eEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceE
Q 006375 198 TRFVFYLDVSKPE-ELRVLTPRVVGVD-T--AASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDI 273 (648)
Q Consensus 198 ~~~l~~~dl~~~~-~~~~l~~~~~~~~-~--~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (648)
+..|.++|+.++. ....+......+. . .++++|..++++...+ ..|.+.|+.+......+..+.....+..+
T Consensus 286 DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D----~tvklWD~~~~~~~~~~~~~~~~~~v~~v 361 (524)
T 2j04_B 286 NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVD----GYFYIFNPKDIATTKTTVSRFRGSNLVPV 361 (524)
T ss_dssp TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETT----SEEEEECGGGHHHHCEEEEECSCCSCCCE
T ss_pred CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccC----CeEEEEECCCCCcccccccccccCcccce
Confidence 4678899998764 2223333333332 2 3567773444444332 36777787652222223323221124445
Q ss_pred EEeCCE-EEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEEC
Q 006375 274 QLFIDH-LAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDM 352 (648)
Q Consensus 274 ~~~~~~-l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~ 352 (648)
.+.++. .++....+ ..+.++++.. +..+ ..+. .....|..+.+++++..+ ++.+ .-..+..+|+
T Consensus 362 ~fsp~~~~l~s~~~d--~tv~lwd~~~-~~~~------~~l~--gH~~~V~sva~Sp~g~~l-~Sgs---~Dgtv~lwd~ 426 (524)
T 2j04_B 362 VYCPQIYSYIYSDGA--SSLRAVPSRA-AFAV------HPLV--SRETTITAIGVSRLHPMV-LAGS---ADGSLIITNA 426 (524)
T ss_dssp EEETTTTEEEEECSS--SEEEEEETTC-TTCC------EEEE--ECSSCEEEEECCSSCCBC-EEEE---TTTEEECCBS
T ss_pred EeCCCcCeEEEeCCC--CcEEEEECcc-cccc------eeee--cCCCceEEEEeCCCCCeE-EEEE---CCCEEEEEec
Confidence 555532 33343333 3577888763 2211 1111 111124445566776643 3332 2245666666
Q ss_pred CC
Q 006375 353 DM 354 (648)
Q Consensus 353 ~~ 354 (648)
..
T Consensus 427 ~~ 428 (524)
T 2j04_B 427 AR 428 (524)
T ss_dssp CS
T ss_pred hH
Confidence 44
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.40 E-value=0.086 Score=54.26 Aligned_cols=196 Identities=5% Similarity=-0.003 Sum_probs=112.6
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCC----eeeccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT----PVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~----~~~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~ 155 (648)
..++.|++.++.|.|+- ..+ ..|+.+++++.. .......+ ...+++..+.+ .||++-. ....|++
T Consensus 114 ~~~l~~d~~~~~lywsD-~~~---~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~----~~~~I~~ 185 (400)
T 3p5b_L 114 VVALDTEVASNRIYWSD-LSQ---RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS----VLGTVSV 185 (400)
T ss_dssp EEEEEEETTTTEEEEEE-TTT---TEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEET----TTTEEEE
T ss_pred ceEEeeeeccCceEEEe-cCC---CeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEEC----CCCeEEE
Confidence 45778888888776654 333 268888887632 11111111 12347777656 7766532 2346888
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccc-eeeeEeecCCEE
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHF 233 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~-~~~~~s~dg~~l 233 (648)
.++++. ....+.... ...-.++++.|.+.+|+++.. .....|+++++++.. .+.+.. .... .-..++++++.|
T Consensus 186 ~~~~g~--~~~~l~~~~-~~~P~~iavdp~~g~ly~td~-~~~~~I~~~~~dG~~-~~~~~~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 186 ADTKGV--KRKTLFREN-GSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp ECTTTC--SEEEEEECS-SCCEEEEEEETTTTEEEEEEC-SSSCCEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEE
T ss_pred EeCCCC--ceEEEEeCC-CCCcceEEEecccCeEEEEeC-CCCCEEEEEeCCCCc-cEEEEECCCCceEEEEEEeCCCEE
Confidence 888765 233343322 222346778888888887543 234689999998865 444432 2111 224588889999
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCC-CCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHR-ESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
|+.-. .+.+|.++++++ ...+.++... .-....++.++++++++.... ..+|..++..
T Consensus 261 Y~aD~----~~~~I~~~d~dG-~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~--~~~V~~~~~~ 319 (400)
T 3p5b_L 261 YWVDS----KLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFEDKVFWTDII--NEAIFSANRL 319 (400)
T ss_dssp EEEET----TTTEEEEEETTS-CCCEEEEECSSTTSSEEEEEEETTEEEEEESS--SCSEEEEESS
T ss_pred EEEEC----CCCEEEEEeCCC-CccEEEEeCCCCCCCCEEEEEeCCEEEEecCC--CCeEEEEEcC
Confidence 88743 246899999976 3333343321 122355778888888776643 3456666643
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.085 Score=51.08 Aligned_cols=194 Identities=8% Similarity=0.014 Sum_probs=100.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc----c---CccceeEEe-cCCeEEEEEeCCCCCCceE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL----V---GVTASVEWA-GNEALVYITMDEILRPDKA 153 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~----~---~~~~~~~Ws-pDg~l~y~~~~~~~~~~~l 153 (648)
...++.++|||+. |..+..+ ..|+++|.++........ . .....++++ ++|.++++... ....|
T Consensus 31 ~p~~v~~~~~g~l--~v~~~~~---~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~---~~~~i 102 (286)
T 1q7f_A 31 EPSGVAVNAQNDI--IVADTNN---HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS---PTHQI 102 (286)
T ss_dssp CEEEEEECTTCCE--EEEEGGG---TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG---GGCEE
T ss_pred CCceEEECCCCCE--EEEECCC---CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC---CCCEE
Confidence 4567889999984 3333222 368899987443222111 0 112357784 56677665421 12457
Q ss_pred EEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec--ccc-eeeeEeecC
Q 006375 154 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR--VVG-VDTAASHRG 230 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~--~~~-~~~~~s~dg 230 (648)
++++.. + +....+.........++.+++||+ +++... ....|+++|.++.. ...+... ... ....++++|
T Consensus 103 ~~~d~~-g--~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~~g~~-~~~~~~~~~~~~p~~i~~~~~g 175 (286)
T 1q7f_A 103 QIYNQY-G--QFVRKFGATILQHPRGVTVDNKGR-IIVVEC--KVMRVIIFDQNGNV-LHKFGCSKHLEFPNGVVVNDKQ 175 (286)
T ss_dssp EEECTT-S--CEEEEECTTTCSCEEEEEECTTSC-EEEEET--TTTEEEEECTTSCE-EEEEECTTTCSSEEEEEECSSS
T ss_pred EEECCC-C--cEEEEecCccCCCceEEEEeCCCC-EEEEEC--CCCEEEEEcCCCCE-EEEeCCCCccCCcEEEEECCCC
Confidence 777733 2 222223222222345678899997 444322 34679999976543 3333211 111 224478877
Q ss_pred CEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCC-CcccceEEEeCCE-EEEEEecCCeeEEEEEEcC
Q 006375 231 NHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE-SVKLQDIQLFIDH-LAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 231 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~ 298 (648)
+ +|+.... +..|.+++.++ . ....+.... ...+.++.++.+. +++....+ ...|.+++.+
T Consensus 176 ~-l~v~~~~----~~~i~~~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~-~~~i~~~~~~ 237 (286)
T 1q7f_A 176 E-IFISDNR----AHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGEILIADNHN-NFNLTIFTQD 237 (286)
T ss_dssp E-EEEEEGG----GTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCCEEEEECSS-SCEEEEECTT
T ss_pred C-EEEEECC----CCEEEEEcCCC-C-EEEEEccCCccCCCcEEEECCCCCEEEEeCCC-CEEEEEECCC
Confidence 5 6665432 35788888754 2 212232221 1235667777654 44443322 1367777754
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.13 Score=52.66 Aligned_cols=154 Identities=5% Similarity=0.030 Sum_probs=93.2
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
.++.+.|.++.|.++-... ..|+++++++.........+ .-..++..|++ .||++-. ....+|++.++++
T Consensus 162 ~glavd~~~g~lY~~d~~~----~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~---~~~~~I~r~~~dG 234 (386)
T 3v65_B 162 GGLAVDWVHDKLYWTDSGT----SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW---GNTPRIEASSMDG 234 (386)
T ss_dssp CCEEEETTTTEEEEEETTT----TEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEEC---SSSCEEEEEETTS
T ss_pred cEEEEEeCCCeEEEEcCCC----CeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEecc---CCCCEEEEEeCCC
Confidence 3677888888776664432 27889998876543221111 23458888887 7766532 2246799999876
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccC
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSD 240 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~ 240 (648)
. ....+.. ..-.+-.+++++++++.|++... ....|+.+|+++.. .+.+.......-..+.-+++.||++...
T Consensus 235 ~--~~~~~~~-~~~~~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~-~~~~~~~~~~~P~giav~~~~ly~td~~- 307 (386)
T 3v65_B 235 S--GRRIIAD-THLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSH-RKAVISQGLPHPFAITVFEDSLYWTDWH- 307 (386)
T ss_dssp C--SCEEEEC-SSCSCEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCS-CEEEECSSCSSEEEEEEETTEEEEEETT-
T ss_pred C--CcEEEEE-CCCCCeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCe-eEEEEECCCCCceEEEEECCEEEEeeCC-
Confidence 5 3333332 22334557899999999887533 34789999998765 3444322111122233466777776442
Q ss_pred CCCCcEEEEEeCCC
Q 006375 241 ELFNSELLACPVDN 254 (648)
Q Consensus 241 ~~~~~~l~~~~~~~ 254 (648)
+.+|.+++..+
T Consensus 308 ---~~~V~~~~~~~ 318 (386)
T 3v65_B 308 ---TKSINSANKFT 318 (386)
T ss_dssp ---TTEEEEEETTT
T ss_pred ---CCeEEEEECCC
Confidence 35788888433
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.058 Score=52.35 Aligned_cols=223 Identities=9% Similarity=0.039 Sum_probs=113.5
Q ss_pred EEEEEEEECCCCCeeec-cccC--ccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEe
Q 006375 106 IYTVYVIDIETGTPVGK-PLVG--VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQA 182 (648)
Q Consensus 106 ~~~l~v~dl~~g~~~~~-~~~~--~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (648)
...|+++|.++|+.+-. .... ....+.++|||.++++ . ...|+.++. ++ +..--+..........+..
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs-~-----~~~V~~~d~-~G--~~~W~~~~~~~~~~~~~~~ 84 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS-Y-----SKGAKMITR-DG--RELWNIAAPAGCEMQTARI 84 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE-C-----BSEEEEECT-TS--CEEEEEECCTTCEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe-C-----CCCEEEECC-CC--CEEEEEcCCCCccccccEE
Confidence 45889999999987632 2222 2345889999976663 2 234777777 44 2222222221223446778
Q ss_pred CCCCcEEEEEEccccccEEEEEECCCCCceeEeee--cccc-----eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCC
Q 006375 183 SESKKFLFIASESKITRFVFYLDVSKPEELRVLTP--RVVG-----VDTAASHRGNHFFITRRSDELFNSELLACPVDNT 255 (648)
Q Consensus 183 s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~--~~~~-----~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~ 255 (648)
++||+.++..+. ....++.+|.++.. ...+.- ...+ ....+.++|+.|+... .+.+|+.+|.+
T Consensus 85 ~~dG~~lv~~~~--~~~~v~~vd~~Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-----~~~~v~~~d~~-- 154 (276)
T 3no2_A 85 LPDGNALVAWCG--HPSTILEVNMKGEV-LSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-----ATSEVREIAPN-- 154 (276)
T ss_dssp CTTSCEEEEEES--TTEEEEEECTTSCE-EEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-----TTTEEEEECTT--
T ss_pred CCCCCEEEEecC--CCCEEEEEeCCCCE-EEEEeccCCCCcccccccCceECCCCCEEEEec-----CCCEEEEECCC--
Confidence 999998876443 14578888875443 222211 1001 1123677888554332 23589999986
Q ss_pred CcceeEecCCCCcccceEEEeC-CEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCC-CeeeeeCCCCcccccE
Q 006375 256 SETTVLIPHRESVKLQDIQLFI-DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID-PVYSIDPSESVFSSRI 333 (648)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~-~~~~v~~~~~~~~~~~ 333 (648)
++..|.+..... ..+..... +.+++....+ .++..++.++ |+.+..+... . ++. ....+.+.....+++.
T Consensus 155 G~~~w~~~~~~~--~~~~~~~~~g~~~v~~~~~--~~v~~~d~~t-G~~~w~~~~~-~--~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 155 GQLLNSVKLSGT--PFSSAFLDNGDCLVACGDA--HCFVQLNLES-NRIVRRVNAN-D--IEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp SCEEEEEECSSC--CCEEEECTTSCEEEECBTT--SEEEEECTTT-CCEEEEEEGG-G--SBSCCCSEEEEEEECTTSCE
T ss_pred CCEEEEEECCCC--ccceeEcCCCCEEEEeCCC--CeEEEEeCcC-CcEEEEecCC-C--CCCccccccccceEcCCCCE
Confidence 456665443211 22333343 3444444333 3566666553 3322221100 0 000 0001222333456665
Q ss_pred EEEEEeeCC------CCCEEEEEECCCCc
Q 006375 334 LRFHYSSLR------TPPSVYDYDMDMGI 356 (648)
Q Consensus 334 l~~~~ss~~------~P~~~~~~d~~~~~ 356 (648)
++..+.+-. ...+++.++. +|+
T Consensus 227 ~v~~~~g~~~~~~~~~~~~~~~~~~-~g~ 254 (276)
T 3no2_A 227 YICNWQGHDREAGKGKHPQLVEIDS-EGK 254 (276)
T ss_dssp EEEEECTTCTTGGGSCCCSEEEECT-TSB
T ss_pred EEEeccCccccccccCCceEEEECC-CCC
Confidence 544443332 3567888876 566
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.31 E-value=0.076 Score=52.56 Aligned_cols=193 Identities=8% Similarity=-0.042 Sum_probs=105.4
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc---cCccceeEEecCC--eEEEEEeCCCCCCceEEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---VGVTASVEWAGNE--ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~---~~~~~~~~WspDg--~l~y~~~~~~~~~~~l~~~~ 157 (648)
.....++|++++|+.... +| .+.++|+.+........ ......++|++++ .++++... ...|..++
T Consensus 131 ~~~~~~~~~~~~l~s~s~-d~----~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~----d~~i~i~d 201 (340)
T 4aow_A 131 VLSVAFSSDNRQIVSGSR-DK----TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW----DKLVKVWN 201 (340)
T ss_dssp EEEEEECTTSSCEEEEET-TS----CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEET----TSCEEEEE
T ss_pred eeEEEEeecCccceeecC-CC----eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcC----CCEEEEEE
Confidence 345678999998876543 33 57888987765443222 2234458899987 44444432 23477888
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFIT 236 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~ 236 (648)
+.+. +....+... ......+.++|||++|+..+. +..|.++|+.+.+ ..........+ ...++|++..+ ..
T Consensus 202 ~~~~--~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~---Dg~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~~-~~ 273 (340)
T 4aow_A 202 LANC--KLKTNHIGH-TGYLNTVTVSPDGSLCASGGK---DGQAMLWDLNEGK-HLYTLDGGDIINALCFSPNRYWL-CA 273 (340)
T ss_dssp TTTT--EEEEEECCC-SSCEEEEEECTTSSEEEEEET---TCEEEEEETTTTE-EEEEEECSSCEEEEEECSSSSEE-EE
T ss_pred CCCC--ceeeEecCC-CCcEEEEEECCCCCEEEEEeC---CCeEEEEEeccCc-eeeeecCCceEEeeecCCCCcee-ec
Confidence 8775 223333322 233456789999998875443 3568889998865 22222222222 24577876543 33
Q ss_pred eccCCCCCcEEEEEeCCCCCcceeE-------ecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcCC
Q 006375 237 RRSDELFNSELLACPVDNTSETTVL-------IPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~ 299 (648)
+.. ..|.+.|+++......+ ........+..+.+.++. .++....++ .|++|++.+
T Consensus 274 ~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg--~v~iW~~~t 337 (340)
T 4aow_A 274 ATG-----PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN--LVRVWQVTI 337 (340)
T ss_dssp EET-----TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS--CEEEEEEEC
T ss_pred cCC-----CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC--EEEEEeCCC
Confidence 322 35777777652111101 001112235556665542 334444554 577778764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.01 Score=63.62 Aligned_cols=193 Identities=10% Similarity=0.138 Sum_probs=105.4
Q ss_pred EeeEEeCCC------CCEEEEEEeCCCCeEEEEEEEECCCCCee---------e-ccc---cCccceeEEecCCeEEEEE
Q 006375 83 VGCFQVSPD------NKLVAYAEDTKGDEIYTVYVIDIETGTPV---------G-KPL---VGVTASVEWAGNEALVYIT 143 (648)
Q Consensus 83 ~~~~~~SPD------G~~la~~~~~~G~e~~~l~v~dl~~g~~~---------~-~~~---~~~~~~~~WspDg~l~y~~ 143 (648)
+..+.|||+ |++||-... +| +|++||+.+++.. + ..+ ......++|++++.|+ +.
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~-Dg----tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~la-sg 283 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQ-EG----TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVV-CG 283 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEET-TS----CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEE-EE
T ss_pred EEEEEECCCCCCCCCCceEEEEec-CC----eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEE-EE
Confidence 567899997 567775543 34 6899999876421 0 011 1234569999876554 44
Q ss_pred eCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEE--EeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-
Q 006375 144 MDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGL--QASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV- 220 (648)
Q Consensus 144 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~- 220 (648)
.. ...|.++++.++.. ....+..+.. ....+ .++++|..++++.. .+..|.++|+.+++....+.....
T Consensus 284 s~----DgtV~lWD~~~~~~-~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S--~D~tvklWD~~~~~~~~~~~~~~~~ 355 (524)
T 2j04_B 284 FK----NGFVAEFDLTDPEV-PSFYDQVHDS-YILSVSTAYSDFEDTVVSTVA--VDGYFYIFNPKDIATTKTTVSRFRG 355 (524)
T ss_dssp ET----TSEEEEEETTBCSS-CSEEEECSSS-CEEEEEEECCTTSCCEEEEEE--TTSEEEEECGGGHHHHCEEEEECSC
T ss_pred eC----CCEEEEEECCCCCC-ceEEeecccc-cEEEEEEEcCCCCCeEEEEec--cCCeEEEEECCCCCccccccccccc
Confidence 32 23588889886522 2233433322 23344 67899844444333 235678888877541222332222
Q ss_pred -ce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEc
Q 006375 221 -GV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRL 297 (648)
Q Consensus 221 -~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~ 297 (648)
.+ ...|+|++..|+..+.. ..+...|+........+..+... +.++.+.+++ .++....++ .+.++++
T Consensus 356 ~~v~~v~fsp~~~~l~s~~~d-----~tv~lwd~~~~~~~~~l~gH~~~--V~sva~Sp~g~~l~Sgs~Dg--tv~lwd~ 426 (524)
T 2j04_B 356 SNLVPVVYCPQIYSYIYSDGA-----SSLRAVPSRAAFAVHPLVSRETT--ITAIGVSRLHPMVLAGSADG--SLIITNA 426 (524)
T ss_dssp CSCCCEEEETTTTEEEEECSS-----SEEEEEETTCTTCCEEEEECSSC--EEEEECCSSCCBCEEEETTT--EEECCBS
T ss_pred CcccceEeCCCcCeEEEeCCC-----CcEEEEECcccccceeeecCCCc--eEEEEeCCCCCeEEEEECCC--EEEEEec
Confidence 12 35699999875433322 25667787663332324444433 4555555543 334455555 4666665
Q ss_pred C
Q 006375 298 P 298 (648)
Q Consensus 298 ~ 298 (648)
.
T Consensus 427 ~ 427 (524)
T 2j04_B 427 A 427 (524)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.015 Score=55.91 Aligned_cols=190 Identities=12% Similarity=0.146 Sum_probs=104.0
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCCeEEEEEeCCCCCCceEEEEECCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
..++.++|||+ | |..+.++ .|+++|.+++........+ ....+++.+||.++++... ...|++++.++
T Consensus 69 p~~i~~~~~g~-l-~v~~~~~----~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~~i~~~~~~~ 138 (270)
T 1rwi_B 69 PQGLAVDGAGT-V-YVTDFNN----RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRG----NNRVVKLAAGS 138 (270)
T ss_dssp CCCEEECTTCC-E-EEEETTT----EEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGG----GTEEEEECTTC
T ss_pred cceeEECCCCC-E-EEEcCCC----EEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECC----CCEEEEEECCC
Confidence 34688999998 3 4444333 6889998876654322222 2345888998886665432 24577776554
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccc-eeeeEeecCCEEEEEec
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITRR 238 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~~~ 238 (648)
. .. ............++.+++||+ |++... ....|+++|.++.. ...... .... ....++++| .||+...
T Consensus 139 ~--~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~g-~l~v~~~ 210 (270)
T 1rwi_B 139 K--TQ-TVLPFTGLNDPDGVAVDNSGN-VYVTDT--DNNRVVKLEAESNN-QVVLPFTDITAPWGIAVDEAG-TVYVTEH 210 (270)
T ss_dssp C--SC-EECCCCSCCSCCCEEECTTCC-EEEEEG--GGTEEEEECTTTCC-EEECCCSSCCSEEEEEECTTC-CEEEEET
T ss_pred c--ee-EeeccccCCCceeEEEeCCCC-EEEEEC--CCCEEEEEecCCCc-eEeecccCCCCceEEEECCCC-CEEEEEC
Confidence 3 11 221111111223567899997 554332 34689999988765 332211 1111 223477777 5777654
Q ss_pred cCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcC
Q 006375 239 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~ 298 (648)
. +..|.+++.++ .... .+.......+.++.++++. +++... +..+|.+++++
T Consensus 211 ~----~~~v~~~~~~~-~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~--~~~~v~~~~~~ 263 (270)
T 1rwi_B 211 N----TNQVVKLLAGS-TTST-VLPFTGLNTPLAVAVDSDRTVYVADR--GNDRVVKLTSL 263 (270)
T ss_dssp T----TSCEEEECTTC-SCCE-ECCCCSCSCEEEEEECTTCCEEEEEG--GGTEEEEECCC
T ss_pred C----CCcEEEEcCCC-Ccce-eeccCCCCCceeEEECCCCCEEEEEC--CCCEEEEEcCC
Confidence 3 24688888765 2222 2222211235566776653 444433 33467777765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.25 Score=51.31 Aligned_cols=237 Identities=14% Similarity=0.089 Sum_probs=119.9
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
+..+.+ ++++|+... .+| .|+++|+.+++..... -......+.| |+ .++ +... ...|..+++.
T Consensus 202 v~~~~~--~~~~l~s~s-~dg----~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~-~~~~----dg~i~iwd~~ 267 (445)
T 2ovr_B 202 VRCMHL--HEKRVVSGS-RDA----TLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVV-SGAY----DFMVKVWDPE 267 (445)
T ss_dssp EEEEEE--ETTEEEEEE-TTS----EEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEE-EEET----TSCEEEEEGG
T ss_pred EEEEEe--cCCEEEEEe-CCC----EEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEE-EEcC----CCEEEEEECC
Confidence 344445 456665543 334 7999999998865421 1222334666 77 554 4432 2347788887
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEecc
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRS 239 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~ 239 (648)
++ +....+... ......+.+ |+++++..+. +..|.++|+.+++ ..............++++++.|+..+..
T Consensus 268 ~~--~~~~~~~~~-~~~v~~~~~--~~~~l~~~~~---d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~l~~~~~d 338 (445)
T 2ovr_B 268 TE--TCLHTLQGH-TNRVYSLQF--DGIHVVSGSL---DTSIRVWDVETGN-CIHTLTGHQSLTSGMELKDNILVSGNAD 338 (445)
T ss_dssp GT--EEEEEECCC-SSCEEEEEE--CSSEEEEEET---TSCEEEEETTTCC-EEEEECCCCSCEEEEEEETTEEEEEETT
T ss_pred CC--cEeEEecCC-CCceEEEEE--CCCEEEEEeC---CCeEEEEECCCCC-EEEEEcCCcccEEEEEEeCCEEEEEeCC
Confidence 65 222233322 223334555 8888876543 3458899998876 3222222222233466778766554432
Q ss_pred CCCCCcEEEEEeCCCCCcceeEecC-CCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCC
Q 006375 240 DELFNSELLACPVDNTSETTVLIPH-RESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDP 318 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~ 318 (648)
..|...|+.+......+..+ .....+..+.+.++.++.. ..++ .+.+|++.. +..+..+.. ......
T Consensus 339 -----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~-~~dg--~v~iwd~~~-~~~~~~~~~---~~~~~~ 406 (445)
T 2ovr_B 339 -----STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDG--TVKLWDLKT-GEFIRNLVT---LESGGS 406 (445)
T ss_dssp -----SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEE-ETTS--EEEEEETTT-CCEEEEEEE---CTTGGG
T ss_pred -----CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEE-eCCC--eEEEEECCC-Cceeeeeec---cccCCC
Confidence 36777888663322212221 1233466777777665544 4443 678888874 222211100 000011
Q ss_pred eeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCC
Q 006375 319 VYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDM 354 (648)
Q Consensus 319 ~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~ 354 (648)
...+..+.+++++..+......-+.+..++.+|...
T Consensus 407 ~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 407 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 112333445555443333322223356677777653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.032 Score=55.28 Aligned_cols=115 Identities=14% Similarity=0.067 Sum_probs=67.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-ecccc---CccceeEEecC--CeEEEEEeCCCCCCceEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GKPLV---GVTASVEWAGN--EALVYITMDEILRPDKAWL 155 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-~~~~~---~~~~~~~WspD--g~l~y~~~~~~~~~~~l~~ 155 (648)
.+..+.|||||++||-... +| +|++||+.+++.. ...+. +....++|+|+ +.++++...+ ..|..
T Consensus 15 ~V~~v~~s~~g~~lasgs~-D~----~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D----~~v~i 85 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSS-DR----SVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD----RKVII 85 (316)
T ss_dssp CEEEEEECGGGCEEEEEET-TT----EEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT----SCEEE
T ss_pred eEEEeeEcCCCCEEEEEeC-CC----eEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC----CEEEE
Confidence 4567899999999886543 33 7999999887532 11222 23456899864 6444555422 34777
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCC--CcEEEEEEccccccEEEEEECCCC
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASES--KKFLFIASESKITRFVFYLDVSKP 209 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~D--g~~l~~~~~~~~~~~l~~~dl~~~ 209 (648)
+++.++.......+..+ ......+.|+|| |.+|+..+. +..|.++|+.++
T Consensus 86 Wd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~g~~lasgs~---D~~i~lwd~~~~ 137 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGH-DSSVNSVCWAPHDYGLILACGSS---DGAISLLTYTGE 137 (316)
T ss_dssp ECCSSSCCCEEEEECCC-SSCCCEEEECCTTTCSCEEEECS---SSCEEEEEECSS
T ss_pred EECCCCcceEEEEccCC-CCceEEEEECCCCCCcEEEEEcC---CCCEEEEecCCC
Confidence 78876532222233222 223346789998 666654332 234666777654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.23 Score=49.96 Aligned_cols=153 Identities=5% Similarity=0.029 Sum_probs=92.3
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
.++.+.+.++.|.++-... ..|.+.++++.........+ .-..++..|++ .||++-. ....+|++.++++
T Consensus 119 ~glavd~~~g~ly~~d~~~----~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~---~~~~~I~r~~~dG 191 (349)
T 3v64_C 119 GGLAVDWVHDKLYWTDSGT----SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW---GNTPRIEASSMDG 191 (349)
T ss_dssp CEEEEETTTTEEEEEETTT----TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC---SSSCEEEEEETTS
T ss_pred cEEEEecCCCeEEEEcCCC----CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc---CCCCEEEEEeCCC
Confidence 3678888888876664433 27899999876543221111 23458899977 7776643 2246799999876
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccC
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSD 240 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~ 240 (648)
. ....+.. ..-.+-.+++++++++.|++... ....|+.+++++.. .+.+.......-..+.-+++.||++...
T Consensus 192 ~--~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~-~~~~~~~~~~~P~giav~~~~ly~td~~- 264 (349)
T 3v64_C 192 S--GRRIIAD-THLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSH-RKAVISQGLPHPFAITVFEDSLYWTDWH- 264 (349)
T ss_dssp C--SCEESCC-SSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTEEEEEETT-
T ss_pred C--CcEEEEE-CCCCCcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCc-eEEEEeCCCCCceEEEEECCEEEEecCC-
Confidence 4 2333322 22334557899999998887533 34789999998765 3443322111112233356677776443
Q ss_pred CCCCcEEEEEeCC
Q 006375 241 ELFNSELLACPVD 253 (648)
Q Consensus 241 ~~~~~~l~~~~~~ 253 (648)
+.+|.+++..
T Consensus 265 ---~~~V~~~~~~ 274 (349)
T 3v64_C 265 ---TKSINSANKF 274 (349)
T ss_dssp ---TTEEEEEETT
T ss_pred ---CCeEEEEEcc
Confidence 3578888743
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.19 E-value=0.09 Score=54.11 Aligned_cols=177 Identities=9% Similarity=0.030 Sum_probs=103.4
Q ss_pred EEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCC--CCcEEEEeecCCCeEEEEEe
Q 006375 107 YTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ--SNDICLYHEKDDIYSLGLQA 182 (648)
Q Consensus 107 ~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~ 182 (648)
..|+.++++++..... ........++|.+++ .||++-. ....|+++++.+.. .....+.... ...-.++++
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~----~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~p~glav 166 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL----SQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAV 166 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEET----TTTEEEEEEC------CCCEEEECSS-CSCEEEEEE
T ss_pred ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEec----CCCeEEEEEcccCCCCCcceEEEeCC-CCCcccEEE
Confidence 3789999988765432 111223459999877 8877643 23568888887531 1233343322 223345677
Q ss_pred CCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee
Q 006375 183 SESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV 260 (648)
Q Consensus 183 s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (648)
.+.++.|++... ....|+++++++.. .+.+.. .... ....++|.++.||++... .+.+|+++++++ ...+.
T Consensus 167 D~~~~~lY~~d~--~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~---~~~~I~~~~~dG-~~~~~ 239 (400)
T 3p5b_L 167 DWIHSNIYWTDS--VLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWG---TPAKIKKGGLNG-VDIYS 239 (400)
T ss_dssp ETTTTEEEEEET--TTTEEEEECTTTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECS---SSCCEEEEETTS-CSCEE
T ss_pred EecCCceEEEEC--CCCeEEEEeCCCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCC---CCCEEEEEeCCC-CccEE
Confidence 776777777533 34689999998775 444433 2111 234578888888876542 235899999986 33333
Q ss_pred EecCCCCcccceEEEe--CCEEEEEEecCCeeEEEEEEcC
Q 006375 261 LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 261 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
++.... ....++.++ ++.||+.-. ...+|+.++++
T Consensus 240 ~~~~~l-~~P~glavd~~~~~lY~aD~--~~~~I~~~d~d 276 (400)
T 3p5b_L 240 LVTENI-QWPNGITLDLLSGRLYWVDS--KLHSISSIDVN 276 (400)
T ss_dssp EECSSC-SCEEEEEEETTTTEEEEEET--TTTEEEEEETT
T ss_pred EEECCC-CceEEEEEEeCCCEEEEEEC--CCCEEEEEeCC
Confidence 444332 235567776 456665543 34678888887
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.04 Score=56.97 Aligned_cols=150 Identities=14% Similarity=0.074 Sum_probs=88.4
Q ss_pred EEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee-ec----c-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 86 FQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV-GK----P-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 86 ~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~-~~----~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
+.|+|+|+.|.++ +..+. ..|++++.+++... .. . .......++++|++ .||+ .. . ..+|+++++
T Consensus 176 ia~~~~g~~l~~~-d~~~~--~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d-~---~~~I~~~d~ 247 (409)
T 3hrp_A 176 PAVTKDKQRVYSI-GWEGT--HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VD-S---NKNFGRFNV 247 (409)
T ss_dssp CEECTTSSEEEEE-BSSTT--CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-EC-T---TCEEEEEET
T ss_pred eeEecCCCcEEEE-ecCCC--ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EE-C---CCcEEEEEC
Confidence 7899999976554 44332 27999998876542 11 1 11223458999965 7766 32 1 347999998
Q ss_pred CCCCCCcEEEE----eecCCCeE-E-EEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc-------------
Q 006375 159 EADQSNDICLY----HEKDDIYS-L-GLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV------------- 219 (648)
Q Consensus 159 ~~~~~~~~~~~----~~~~~~~~-~-~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~------------- 219 (648)
.++. ..++ ......+. . ++.++|++..|++.. .....|++++.++. ...+....
T Consensus 248 ~~~~---~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d--~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~ 320 (409)
T 3hrp_A 248 KTQE---VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD--QNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEA 320 (409)
T ss_dssp TTCC---EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE--TTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGC
T ss_pred CCCC---EEEEecccccCCCCCCccccEEEeCCCCEEEEEe--CCCCEEEEEecCCC--EEEEEeCCCCCCcCCCccccc
Confidence 8762 3333 11111222 2 678999777777643 34568999988754 33332211
Q ss_pred --cc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 220 --VG-VDTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 220 --~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
.. ....++++|. ||+.-. ..+.+|.++++.+
T Consensus 321 ~~~~P~gia~d~dG~-lyvad~---~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 321 LFAQPNGMTVDEDGN-FYIVDG---FKGYCLRKLDILD 354 (409)
T ss_dssp BCSSEEEEEECTTCC-EEEEET---TTTCEEEEEETTT
T ss_pred EeCCCeEEEEeCCCC-EEEEeC---CCCCEEEEEECCC
Confidence 00 1234788887 666633 0346888888654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.15 Score=50.49 Aligned_cols=175 Identities=9% Similarity=0.031 Sum_probs=100.9
Q ss_pred EEEEEECCCCCeeec--cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCC--CCcEEEEeecCCCeEEEEEe
Q 006375 108 TVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ--SNDICLYHEKDDIYSLGLQA 182 (648)
Q Consensus 108 ~l~v~dl~~g~~~~~--~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~ 182 (648)
.|+.+|+++++.... .... ...++|.+++ .||++-. ....|+++++.+.. .....+.... ...-.++++
T Consensus 11 ~I~~i~~~~~~~~~~~~~~~~-p~g~~~d~~~~~ly~~D~----~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~p~glav 84 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDL----SQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAV 84 (316)
T ss_dssp SEEEEETTSCCCEEEECSCSS-EEEEEEETTTTEEEEEET----TTTEEEEEEC--------CEEEECSS-CSCCCEEEE
T ss_pred eEEEEECCCcceEehhcCCCc-eEEEEEEeCCCEEEEEEC----CCCcEEEEECCCCCCCcccEEEEeCC-CCCcCEEEE
Confidence 588899988765432 1222 3459999987 8877643 24569999887610 1223333221 111235567
Q ss_pred CCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee
Q 006375 183 SESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV 260 (648)
Q Consensus 183 s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (648)
++.++.|+++.. ....|.++++++.. .+.+.. .... ....++|+++.||+.... .+.+|+++++++ ...+.
T Consensus 85 d~~~~~ly~~d~--~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~---~~~~I~~~~~dG-~~~~~ 157 (316)
T 1ijq_A 85 DWIHSNIYWTDS--VLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWG---TPAKIKKGGLNG-VDIYS 157 (316)
T ss_dssp ETTTTEEEEEET--TTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECS---SSCEEEEEETTS-CCEEE
T ss_pred eecCCeEEEEEC--CCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccC---CCCeEEEEcCCC-CCeEE
Confidence 777777776533 34689999998765 444433 2111 234578888888876432 236899999876 33332
Q ss_pred EecCCCCcccceEEEe--CCEEEEEEecCCeeEEEEEEcC
Q 006375 261 LIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 261 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
++.... ....++.++ ++.+|+.-. ...+|.+++++
T Consensus 158 ~~~~~~-~~P~gla~d~~~~~lY~~D~--~~~~I~~~d~d 194 (316)
T 1ijq_A 158 LVTENI-QWPNGITLDLLSGRLYWVDS--KLHSISSIDVN 194 (316)
T ss_dssp EECSSC-SCEEEEEEETTTTEEEEEET--TTTEEEEEETT
T ss_pred EEECCC-CCceEEEEeccCCEEEEEEC--CCCeEEEEecC
Confidence 443322 235567776 456665543 34578888887
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.17 Score=49.37 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=99.2
Q ss_pred EEeeEEeCCC--CCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc---cCccceeEEecC--CeEEEEEeCCCCCCceE
Q 006375 82 SVGCFQVSPD--NKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL---VGVTASVEWAGN--EALVYITMDEILRPDKA 153 (648)
Q Consensus 82 ~~~~~~~SPD--G~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~---~~~~~~~~WspD--g~l~y~~~~~~~~~~~l 153 (648)
.+..+.|||+ |++||-.. .+| +|++||+++++.... .. ......++|+|+ |.++.+...+ ..|
T Consensus 55 ~V~~v~~s~~~~g~~l~s~s-~D~----~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d----~~v 125 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILASCS-YDG----KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD----GKV 125 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEE-TTT----EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT----SEE
T ss_pred CeEEEEecCCCcCCEEEEEc-CCC----EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC----CcE
Confidence 4667899874 88877554 334 799999998753211 11 223456999998 6444444322 347
Q ss_pred EEEECCCCCCCcEEEEeecCCCeEEEEEeCCC-------------CcEEEEEEccccccEEEEEECCCCC-cee---Eee
Q 006375 154 WLHKLEADQSNDICLYHEKDDIYSLGLQASES-------------KKFLFIASESKITRFVFYLDVSKPE-ELR---VLT 216 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~D-------------g~~l~~~~~~~~~~~l~~~dl~~~~-~~~---~l~ 216 (648)
..+++.++.......+... ......+.|+|+ +++|+.. ... ..|.++|+.++. ... .+.
T Consensus 126 ~~wd~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sg-s~D--~~v~lwd~~~~~~~~~~~~~l~ 201 (297)
T 2pm7_B 126 SVVEFKENGTTSPIIIDAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTG-GAD--NLVKIWKYNSDAQTYVLESTLE 201 (297)
T ss_dssp EEEEBCSSSCBCCEEEECC-SSCEEEEEECCCC------------CCEEEEE-ETT--SCEEEEEEETTTTEEEEEEEEC
T ss_pred EEEEecCCCceeeeeeecc-cCccceEeecCCcccccccCCCCCCcceEEEE-cCC--CcEEEEEEcCCCceEEEEEEec
Confidence 7788776522222333333 233446788987 3555533 322 346666665543 111 222
Q ss_pred ecccce-eeeEeecC--CEEEEEeccCCCCCcEEEEEeCCCCCc--ceeEec-CCCCcccceEEEeCCE-EEEEEecCCe
Q 006375 217 PRVVGV-DTAASHRG--NHFFITRRSDELFNSELLACPVDNTSE--TTVLIP-HRESVKLQDIQLFIDH-LAVYEREGGL 289 (648)
Q Consensus 217 ~~~~~~-~~~~s~dg--~~l~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~~~ 289 (648)
.....+ ...|+|++ ..++.....+ ..|.+.+++.... ...++. ......+..+.+.++. +++....++
T Consensus 202 ~H~~~V~~v~~sp~~~~~~~las~s~D----~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~- 276 (297)
T 2pm7_B 202 GHSDWVRDVAWSPTVLLRSYMASVSQD----RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN- 276 (297)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETT----SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS-
T ss_pred CCCCceEEEEECCCCCCceEEEEEECC----CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC-
Confidence 222222 34589986 3333333332 2344445543211 111221 1112234455555442 233444444
Q ss_pred eEEEEEEcCC
Q 006375 290 QKITTYRLPA 299 (648)
Q Consensus 290 ~~l~v~~~~~ 299 (648)
.+.+|+.+.
T Consensus 277 -~v~lw~~~~ 285 (297)
T 2pm7_B 277 -KVTLWKENL 285 (297)
T ss_dssp -CEEEEEECT
T ss_pred -cEEEEEECC
Confidence 456666553
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.036 Score=54.90 Aligned_cols=136 Identities=12% Similarity=0.003 Sum_probs=75.5
Q ss_pred EEeeEEeCC--CCCEEEEEEeCCCCeEEEEEEEECCCCCe---------eec--cccCccceeEEecC--CeEEEEEeCC
Q 006375 82 SVGCFQVSP--DNKLVAYAEDTKGDEIYTVYVIDIETGTP---------VGK--PLVGVTASVEWAGN--EALVYITMDE 146 (648)
Q Consensus 82 ~~~~~~~SP--DG~~la~~~~~~G~e~~~l~v~dl~~g~~---------~~~--~~~~~~~~~~WspD--g~l~y~~~~~ 146 (648)
.+..+.|+| ||++|+.... +| .|++||+.+++. ... ........++|+|+ +.++++...
T Consensus 59 ~v~~~~~~~~~d~~~l~s~~~-dg----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~- 132 (351)
T 3f3f_A 59 SIVAIDWASPEYGRIIASASY-DK----TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN- 132 (351)
T ss_dssp CEEEEEECCGGGCSEEEEEET-TS----CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-
T ss_pred cEEEEEEcCCCCCCEEEEEcC-CC----eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC-
Confidence 467889999 6998886654 34 689999988742 111 11223456999999 843344432
Q ss_pred CCCCceEEEEECCCCCCCcEEEEee----------cCCCeEEEEEeCCC---CcEEEEEEccccccEEEEEECCCCCcee
Q 006375 147 ILRPDKAWLHKLEADQSNDICLYHE----------KDDIYSLGLQASES---KKFLFIASESKITRFVFYLDVSKPEELR 213 (648)
Q Consensus 147 ~~~~~~l~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~s~D---g~~l~~~~~~~~~~~l~~~dl~~~~~~~ 213 (648)
...|+.+++.++.......... ........+.|+|+ ++.++....+ ..+...+...+. ..
T Consensus 133 ---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~~~~~~~-~~ 205 (351)
T 3f3f_A 133 ---DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE---QAIIYQRGKDGK-LH 205 (351)
T ss_dssp ---TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT---EEEEEEECTTSC-EE
T ss_pred ---CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC---CcEEEEccCCCc-ee
Confidence 2358888887764222111100 11122346788997 7777765443 234444545544 32
Q ss_pred Eee---ecccce-eeeEeecC
Q 006375 214 VLT---PRVVGV-DTAASHRG 230 (648)
Q Consensus 214 ~l~---~~~~~~-~~~~s~dg 230 (648)
.+. .....+ ...|+|++
T Consensus 206 ~~~~~~~h~~~i~~~~~~p~~ 226 (351)
T 3f3f_A 206 VAAKLPGHKSLIRSISWAPSI 226 (351)
T ss_dssp EEEECCCCCSCEEEEEECCCS
T ss_pred eeeecCCCCcceeEEEECCCC
Confidence 222 122222 24589998
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.013 Score=66.10 Aligned_cols=198 Identities=12% Similarity=0.086 Sum_probs=109.0
Q ss_pred EEeeEEeCCC--CCEEEEEEeCCCCeEEEEEEEECCCCCee--ec-c-ccCccceeEEecC--CeEEEEEeCCCCCCceE
Q 006375 82 SVGCFQVSPD--NKLVAYAEDTKGDEIYTVYVIDIETGTPV--GK-P-LVGVTASVEWAGN--EALVYITMDEILRPDKA 153 (648)
Q Consensus 82 ~~~~~~~SPD--G~~la~~~~~~G~e~~~l~v~dl~~g~~~--~~-~-~~~~~~~~~WspD--g~l~y~~~~~~~~~~~l 153 (648)
.+..+.|||+ |++|+.... +| .|++||+.+++.. .. . .......++|+|+ +.++++... ...|
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~-Dg----~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~----dg~I 125 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSY-DG----KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS----DGKV 125 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEET-TS----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET----TSEE
T ss_pred ceEEEEecCCCCCCEEEEEeC-CC----eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC----CCcE
Confidence 5678899998 998887654 34 6899999988632 11 1 1223456999999 844444432 2358
Q ss_pred EEEECCCCCCCcEEEEeecCCCeEEEEEeCC-------------CCcEEEEEEccccccEEEEEECCCCC-ceeEe---e
Q 006375 154 WLHKLEADQSNDICLYHEKDDIYSLGLQASE-------------SKKFLFIASESKITRFVFYLDVSKPE-ELRVL---T 216 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-------------Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l---~ 216 (648)
..+++.++.......+... ......+.|+| |++.++..+.+ ..|+++|+.++. ....+ .
T Consensus 126 ~vwdl~~~~~~~~~~~~~~-~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~ 201 (753)
T 3jro_A 126 SVVEFKENGTTSPIIIDAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---NLVKIWKYNSDAQTYVLESTLE 201 (753)
T ss_dssp EEEECCSSSCCCCEEEECC-SSCEEEEEECCCC---------CGGGCCEEEEETT---SCEEEEEEETTTTEEEEEEEEC
T ss_pred EEEEeecCCCcceeEeecC-CCceEEEEecCcccccccccccCCCCCEEEEEECC---CeEEEEeccCCcccceeeeeec
Confidence 8888877633333333332 33445678888 57777755442 347777776654 11222 2
Q ss_pred ecccce-eeeEeec---CCEEEEEeccCCCCCcEEEEEeCCCCCcc--eeEec-CCCCcccceEEEeCCE-EEEEEecCC
Q 006375 217 PRVVGV-DTAASHR---GNHFFITRRSDELFNSELLACPVDNTSET--TVLIP-HRESVKLQDIQLFIDH-LAVYEREGG 288 (648)
Q Consensus 217 ~~~~~~-~~~~s~d---g~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~~ 288 (648)
.....+ ...|+|+ |+.|+..+.. ..|...|+...... ..+.. ......+..+.+.++. .++....++
T Consensus 202 ~h~~~V~~l~~sp~~~~~~~l~s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg 276 (753)
T 3jro_A 202 GHSDWVRDVAWSPTVLLRSYLASVSQD-----RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (753)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEESS-----SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred CCCCcEEEEEeccCCCCCCEEEEEecC-----CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence 222222 2458999 6655444332 34666666542211 11111 1122235566665543 333444444
Q ss_pred eeEEEEEEcCC
Q 006375 289 LQKITTYRLPA 299 (648)
Q Consensus 289 ~~~l~v~~~~~ 299 (648)
.+.+|++..
T Consensus 277 --~I~vwd~~~ 285 (753)
T 3jro_A 277 --KVTLWKENL 285 (753)
T ss_dssp --CEECCBCCS
T ss_pred --EEEEEecCC
Confidence 577778764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.013 Score=60.22 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=49.1
Q ss_pred EEeeEEeCC--------CCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCC-eEEEEEeCCCCCC
Q 006375 82 SVGCFQVSP--------DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRP 150 (648)
Q Consensus 82 ~~~~~~~SP--------DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg-~l~y~~~~~~~~~ 150 (648)
.+..+.||| ||++||=..+ + .+|+|||+.++...... .......++|+|++ .++.+...+
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~~las~s~-D----~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---- 208 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQVIASVGD-D----CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN---- 208 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEEEEEEEET-T----SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT----
T ss_pred ceEEEEEccccccccCCCCCEEEEEEC-C----CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC----
Confidence 467788888 9999886654 2 38999999877654322 22334469999998 666665432
Q ss_pred ceEEEEECCCCC
Q 006375 151 DKAWLHKLEADQ 162 (648)
Q Consensus 151 ~~l~~~~l~~~~ 162 (648)
..|..+++.+++
T Consensus 209 ~~v~~wd~~t~~ 220 (393)
T 4gq1_A 209 GNIRIFDWTLNL 220 (393)
T ss_dssp SEEEEEETTCCC
T ss_pred CEEEEEECCCCc
Confidence 347778887763
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.12 E-value=0.25 Score=48.93 Aligned_cols=156 Identities=8% Similarity=0.052 Sum_probs=95.5
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
.++.+.+.++.|.++-... ..|.++++++.......... .-..++..|++ .||++-. ....+|++.++++
T Consensus 82 ~glavd~~~g~ly~~d~~~----~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~---~~~~~I~r~~~dG 154 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSET----NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW---GEVPKIERAGMDG 154 (318)
T ss_dssp CEEEEETTTTEEEEEETTT----TEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEEC---SSSCEEEEEETTS
T ss_pred cEEEEEcCCCeEEEEECCC----CEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEec---CCCCEEEEEEcCC
Confidence 3678888888776664332 37889999875533221111 23458888876 7766532 2346799999876
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccC
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSD 240 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~ 240 (648)
. ....+... .-.+-.+++++++++.|++... ....|+.+|+++.. .+.+.......-..+..+++.+|.+..
T Consensus 155 ~--~~~~~~~~-~l~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG~~-~~~~~~~~~~~P~glav~~~~lywtd~-- 226 (318)
T 3sov_A 155 S--SRFIIINS-EIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFEDILYWTDW-- 226 (318)
T ss_dssp C--SCEEEECS-SCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCS-CEEEECSCCSCEEEEEEETTEEEEEET--
T ss_pred C--CeEEEEEC-CCCCccEEEEeccCCEEEEEEC--CCCEEEEEcCCCCc-eEEEecCCCCCceEEEEeCCEEEEEec--
Confidence 4 23333322 2334457899999999887532 45789999998765 444443222222335556777877733
Q ss_pred CCCCcEEEEEeCCCCC
Q 006375 241 ELFNSELLACPVDNTS 256 (648)
Q Consensus 241 ~~~~~~l~~~~~~~~~ 256 (648)
.+.+|.+++..++.
T Consensus 227 --~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 227 --STHSILACNKYTGE 240 (318)
T ss_dssp --TTTEEEEEETTTCC
T ss_pred --CCCeEEEEECCCCC
Confidence 23588888875433
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.24 Score=47.87 Aligned_cols=189 Identities=13% Similarity=0.145 Sum_probs=100.2
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc---CccceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~---~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
....+.++|||+.. ++....+ .|+.+|.+ ++......+ .....+++.+||.++++... ...|++++.
T Consensus 58 ~~~~i~~~~~g~l~-v~~~~~~----~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~d~ 127 (299)
T 2z2n_A 58 KVMCLTISSDGEVW-FTENAAN----KIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMN----GNRIGRITD 127 (299)
T ss_dssp CEEEEEECTTSCEE-EEETTTT----EEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT----TTEEEEECT
T ss_pred ceeeEEECCCCCEE-EeCCCCC----eEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecC----CceEEEECC
Confidence 35578899999843 3322223 58888886 443322221 12345788888877765432 345888887
Q ss_pred CCCCCCcEEEEeec-CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEee-ec-ccc-eeeeEeecCCEEE
Q 006375 159 EADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-PR-VVG-VDTAASHRGNHFF 234 (648)
Q Consensus 159 ~~~~~~~~~~~~~~-~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~-~~-~~~-~~~~~s~dg~~l~ 234 (648)
++ + ...+... .......+.+++||+. ++.. .....|+++|. +++ ...+. +. ... ....++++|. ||
T Consensus 128 -~g--~-~~~~~~~~~~~~~~~i~~~~~g~l-~v~~--~~~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~~~~g~-l~ 197 (299)
T 2z2n_A 128 -DG--K-IREYELPNKGSYPSFITLGSDNAL-WFTE--NQNNAIGRITE-SGD-ITEFKIPTPASGPVGITKGNDDA-LW 197 (299)
T ss_dssp -TC--C-EEEEECSSTTCCEEEEEECTTSCE-EEEE--TTTTEEEEECT-TCC-EEEEECSSTTCCEEEEEECTTSS-EE
T ss_pred -CC--C-EEEecCCCCCCCCceEEEcCCCCE-EEEe--CCCCEEEEEcC-CCc-EEEeeCCCCCCcceeEEECCCCC-EE
Confidence 33 1 2222211 1233446778899854 4432 23467999998 555 44331 11 111 1234677776 77
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcC
Q 006375 235 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~ 298 (648)
+.... ...|++++. +........+ .....+.++..+++ .+++.... ...+.+++.+
T Consensus 198 v~~~~----~~~i~~~~~-~g~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~--~~~i~~~d~~ 254 (299)
T 2z2n_A 198 FVEII----GNKIGRITT-SGEITEFKIP-TPNARPHAITAGAGIDLWFTEWG--ANKIGRLTSN 254 (299)
T ss_dssp EEETT----TTEEEEECT-TCCEEEEECS-STTCCEEEEEECSTTCEEEEETT--TTEEEEEETT
T ss_pred EEccC----CceEEEECC-CCcEEEEECC-CCCCCceeEEECCCCCEEEeccC--CceEEEECCC
Confidence 66543 247888887 3222221122 12233556777654 44444322 2456777663
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.27 Score=48.56 Aligned_cols=180 Identities=14% Similarity=0.111 Sum_probs=98.3
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc---------------------cCccceeEEec-CCeEEEE
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---------------------VGVTASVEWAG-NEALVYI 142 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~---------------------~~~~~~~~Wsp-Dg~l~y~ 142 (648)
++.|+|+|+. .|+...+| .|+.++.++++...... .+....+++.+ +|.|++.
T Consensus 23 ~i~~d~~g~~-l~v~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 23 SFTFDSTNKG-FYTSVQDG----RVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp CEECCTTCSS-EEEECTTS----EEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCE-EEEEcCCC----eEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 6789999873 34433333 68888888765432110 01123478887 5577665
Q ss_pred EeCCCCCCceEEEEECCCCCCCcEEEEeecC---CCeEEEEEeCC-CCcEEEEEEcc---------------ccccEEEE
Q 006375 143 TMDEILRPDKAWLHKLEADQSNDICLYHEKD---DIYSLGLQASE-SKKFLFIASES---------------KITRFVFY 203 (648)
Q Consensus 143 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~s~-Dg~~l~~~~~~---------------~~~~~l~~ 203 (648)
... ..|++++..++ ..+.+..... .....++.+.+ ||+ |+++... .....|++
T Consensus 98 d~~-----~~i~~~d~~~g--~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 98 DCY-----YHLSVVGSEGG--HATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp ETT-----TEEEEECTTCE--ECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred ECC-----CCEEEEeCCCC--EEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEE
Confidence 321 23777776544 1222222111 12344678899 885 4554322 12367999
Q ss_pred EECCCCCceeEeeecccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee-EecCCCCcccceEEEeCC-EE
Q 006375 204 LDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFID-HL 280 (648)
Q Consensus 204 ~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~l 280 (648)
+|.++++ .+.+...... ....++++|+.||+.... +.+|+++++++...... ++..... ..++..+.+ .+
T Consensus 170 ~d~~~~~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~----~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d~~G~l 242 (322)
T 2fp8_A 170 YDPSTKE-TTLLLKELHVPGGAEVSADSSFVLVAEFL----SHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRNADGHF 242 (322)
T ss_dssp EETTTTE-EEEEEEEESCCCEEEECTTSSEEEEEEGG----GTEEEEEESSSTTTTCEEEEEECSS--EEEEEECTTSCE
T ss_pred EeCCCCE-EEEeccCCccCcceEECCCCCEEEEEeCC----CCeEEEEECCCCcCCccceEEeCCC--CCCeEECCCCCE
Confidence 9988775 4444322111 224589999988877543 35899998875211111 2222112 556777665 34
Q ss_pred EEEE
Q 006375 281 AVYE 284 (648)
Q Consensus 281 ~~~~ 284 (648)
++..
T Consensus 243 ~va~ 246 (322)
T 2fp8_A 243 WVSS 246 (322)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4444
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.17 Score=47.54 Aligned_cols=192 Identities=13% Similarity=0.114 Sum_probs=104.5
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 161 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~ 161 (648)
.++.+++ ..|..+.-..| ...|.++|+++|+.+.. .++....+..-++++ +||-.. .+...++.+|..+.
T Consensus 24 qGL~~~~--~~LyestG~~g--~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~lt----w~~~~v~v~D~~tl 95 (243)
T 3mbr_X 24 EGLFYLR--GHLYESTGETG--RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLT----WRNHEGFVYDLATL 95 (243)
T ss_dssp EEEEEET--TEEEEEECCTT--SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEE----SSSSEEEEEETTTT
T ss_pred ccEEEEC--CEEEEECCCCC--CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEE----eeCCEEEEEECCcC
Confidence 4677775 44444433334 46899999999998753 334332223345566 775553 45667999999876
Q ss_pred CCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee----eeEeecCCEEEEEe
Q 006375 162 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD----TAASHRGNHFFITR 237 (648)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~----~~~s~dg~~l~~~~ 237 (648)
. ...-+.-....+ .+++|++.|+++ + +++.|+.+|.++.+....+.-...+.. ..+...++.||...
T Consensus 96 ~--~~~ti~~~~~Gw----glt~dg~~L~vS-d--gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanv 166 (243)
T 3mbr_X 96 T--PRARFRYPGEGW----ALTSDDSHLYMS-D--GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANV 166 (243)
T ss_dssp E--EEEEEECSSCCC----EEEECSSCEEEE-C--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred c--EEEEEeCCCCce----EEeeCCCEEEEE-C--CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEE
Confidence 2 222232222233 345688887764 3 367899999998772233322211111 11233355677444
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeE-----ecC------CCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcC
Q 006375 238 RSDELFNSELLACPVDNTSETTVL-----IPH------RESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~ 298 (648)
.. . -.|.++|.+++....++ .+. .....+-+++++. +.+++... -.++++-+.+.
T Consensus 167 w~---s-~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK--~wp~~~~v~~~ 234 (243)
T 3mbr_X 167 WL---T-SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK--RWPMLYEIRLT 234 (243)
T ss_dssp TT---T-TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET--TCSEEEEEEEC
T ss_pred CC---C-CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC--CCCcEEEEEEe
Confidence 33 2 27999998874433332 111 1222456677764 45544433 24556555443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.32 Score=54.52 Aligned_cols=194 Identities=4% Similarity=0.016 Sum_probs=112.8
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCC----eee--c-cccCccceeEEecCC-eEEEEEeCCCCCCceEEE
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT----PVG--K-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~----~~~--~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~ 155 (648)
.++.+.+.+.+|.|+-... ..|+.+++++.. ... . .+.. ..+++..+.+ .||++-. ...+|++
T Consensus 427 ~gl~~d~~~~~lY~sD~~~----~~I~~~~l~g~~~~~~~~~vi~~~l~~-P~GLAvD~~~~~LY~tD~----~~~~I~v 497 (791)
T 3m0c_C 427 VALDTEVASNRIYWSDLSQ----RMICSTQLDRAHGVSSYDTVISRDIQA-PDGLAVDWIHSNIYWTDS----VLGTVSV 497 (791)
T ss_dssp EEEEEETTTTEEEEEETTT----TEEEEEEC--------CEEEECSSCSC-CCEEEEETTTTEEEEEET----TTTEEEE
T ss_pred EEEeecccCCeeEEeeccc----eeEEEEeccCCCCCcceeEEEecCCCC-cceeeeeecCCcEEEEec----CCCeEEE
Confidence 4677888777765554322 268888887632 111 1 1112 2347787777 7766532 2357899
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-ccc-eeeeEeecCCEE
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHF 233 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-~~~-~~~~~s~dg~~l 233 (648)
.++.+. ..+++.... ...-.++++.|.+.+|+++. ......|+++++++.. .+.+... ... ....+++.++.|
T Consensus 498 ~~ldG~--~~~~l~~~~-l~~P~gIaVDp~~g~LYwtD-~g~~~~I~~~~~dG~~-~~~lv~~~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 498 ADTKGV--KRKTLFREN-GSKPRAIVVDPVHGFMYWTD-WGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRL 572 (791)
T ss_dssp EETTSS--SEEEEEECT-TCCEEEEEEETTTTEEEEEE-CSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEE
T ss_pred EeCCCC--eEEEEEeCC-CCCcceEEEecCCCCEEEec-CCCCCeEEEEecCCCc-eEEEEeCCCCCceEEEEecCCCeE
Confidence 998765 333443322 22234678889888888754 2333689999998876 4444332 111 224577788888
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCCC-CcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHRE-SVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
|++-. .+.+|.++++++. ..+.++.... -....++.+++++||+.-... .+|..++..
T Consensus 573 YwaD~----~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~--~~I~~~dk~ 631 (791)
T 3m0c_C 573 YWVDS----KLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIIN--EAIFSANRL 631 (791)
T ss_dssp EEEET----TTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEETTEEEEEETTT--TEEEEEETT
T ss_pred EEEeC----CCCcEEEEecCCC-ceEEEecCCCccCCCCEEEEeCCEEEEEECCC--CEEEEEeCC
Confidence 88743 2358999999763 3333443221 123456778888877665443 466666643
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.018 Score=60.10 Aligned_cols=115 Identities=14% Similarity=0.073 Sum_probs=70.9
Q ss_pred EEeeEEeCCC-CCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 82 SVGCFQVSPD-NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 82 ~~~~~~~SPD-G~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
.+..+.|+|+ +++||-.. .+| +|++||+.++....... ......++|+||| .|+....+ ..|..++
T Consensus 151 ~V~~v~~~p~~~~~las~s-~Dg----~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~d-----g~v~iwd 220 (434)
T 2oit_A 151 MVIDMKWNPTVPSMVAVCL-ADG----SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQN-----GTVVQYL 220 (434)
T ss_dssp SEEEEEECSSCTTEEEEEE-TTS----CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETT-----SCEEEEC
T ss_pred ceEEEEECCCCCCEEEEEE-CCC----eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCC-----CcEEEEc
Confidence 4678999998 67766554 344 69999999885442221 2234569999999 66544322 2477788
Q ss_pred CCCCCCCcEEEEeecC------CCeEEEEEeCCCCcEEEEEEcccc----ccEEEEEECCCC
Q 006375 158 LEADQSNDICLYHEKD------DIYSLGLQASESKKFLFIASESKI----TRFVFYLDVSKP 209 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~------~~~~~~~~~s~Dg~~l~~~~~~~~----~~~l~~~dl~~~ 209 (648)
+. + +....+.... ......+.|++++.+++..+...+ ...++++++...
T Consensus 221 ~~-~--~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 221 PT-L--QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TT-C--CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cC-C--cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 76 2 1222222111 114567899999988876554432 245778887654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.016 Score=66.83 Aligned_cols=153 Identities=10% Similarity=0.087 Sum_probs=90.1
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
..+..+.||| |++|+-.. .+| +|++||+++++.+.. ...+....++|+||+..+++...+ ..|..+++.
T Consensus 59 ~~V~~l~fsp-g~~L~S~s-~D~----~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~d----g~V~lwd~~ 128 (902)
T 2oaj_A 59 SAIKEMRFVK-GIYLVVIN-AKD----TVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQN----GSMIVYDID 128 (902)
T ss_dssp CCEEEEEEET-TTEEEEEE-TTC----EEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETT----SCEEEEETT
T ss_pred CCEEEEEEcC-CCEEEEEE-CcC----eEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCC----CcEEEEECC
Confidence 3578899999 88666543 333 799999999886532 223334569999999434444422 348888887
Q ss_pred CCCCCcEEEEee-----------cCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec----------
Q 006375 160 ADQSNDICLYHE-----------KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR---------- 218 (648)
Q Consensus 160 ~~~~~~~~~~~~-----------~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~---------- 218 (648)
++. ...+.. ........++|+|++..+++.... ...+ ++|+.+++..+.+...
T Consensus 129 ~~~---~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~--dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~ 202 (902)
T 2oaj_A 129 RDQ---LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE--YVTL-TYSLVENEIKQSFIYELPPFAPGGDF 202 (902)
T ss_dssp TTE---EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS--SCEE-EEETTTTEEEEEECCCBCTTCCCSTT
T ss_pred CCc---cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC--CCcE-EEECCCCceEEEEecccCCcCCCccc
Confidence 752 111111 111234467899975444443332 3457 8899887522222211
Q ss_pred --------ccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 219 --------VVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 219 --------~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
...+ ...|+|+|+.|+..+.+ ..|...|+.+
T Consensus 203 ~~~~~~~h~~~V~~v~fspdg~~lasgs~D-----g~i~lWd~~~ 242 (902)
T 2oaj_A 203 SEKTNEKRTPKVIQSLYHPNSLHIITIHED-----NSLVFWDANS 242 (902)
T ss_dssp CCCTTSCBCCCEEEEEECTTSSEEEEEETT-----CCEEEEETTT
T ss_pred ccccccccCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCC
Confidence 0112 24599999877655443 3577777765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.18 Score=48.65 Aligned_cols=192 Identities=11% Similarity=0.145 Sum_probs=100.9
Q ss_pred EeeEEe-CCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-cccc--CccceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 83 VGCFQV-SPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPLV--GVTASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 83 ~~~~~~-SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~~--~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
...+.+ +++|+.+ ..+..+ ...|+++|. +|+... .... .....++++|||.++++.. ....|++++.
T Consensus 79 p~~i~~~~~~g~l~--v~~~~~--~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~ 149 (286)
T 1q7f_A 79 PNRVAVVRNSGDII--VTERSP--THQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVEC----KVMRVIIFDQ 149 (286)
T ss_dssp EEEEEEETTTTEEE--EEECGG--GCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEET----TTTEEEEECT
T ss_pred ceEEEEEcCCCeEE--EEcCCC--CCEEEEECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEEC----CCCEEEEEcC
Confidence 456777 5777643 333211 236888994 455432 1111 1234588999997665532 2346888875
Q ss_pred CCCCCCcEEEEee-cCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc--cc-eeeeEeecCCEEE
Q 006375 159 EADQSNDICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV--VG-VDTAASHRGNHFF 234 (648)
Q Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~--~~-~~~~~s~dg~~l~ 234 (648)
.+. ....+.. .......++.+++||+ |++.. .....|+++|.++.. ...+.... .. ....++++|. ||
T Consensus 150 ~g~---~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~--~~~~~i~~~~~~g~~-~~~~~~~g~~~~p~~i~~d~~G~-l~ 221 (286)
T 1q7f_A 150 NGN---VLHKFGCSKHLEFPNGVVVNDKQE-IFISD--NRAHCVKVFNYEGQY-LRQIGGEGITNYPIGVGINSNGE-IL 221 (286)
T ss_dssp TSC---EEEEEECTTTCSSEEEEEECSSSE-EEEEE--GGGTEEEEEETTCCE-EEEESCTTTSCSEEEEEECTTCC-EE
T ss_pred CCC---EEEEeCCCCccCCcEEEEECCCCC-EEEEE--CCCCEEEEEcCCCCE-EEEEccCCccCCCcEEEECCCCC-EE
Confidence 432 2233322 1122345778999997 44432 235689999986543 33332211 11 2234778874 66
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcC
Q 006375 235 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~ 298 (648)
+.... .+.+|.+++.++ .....+........+.++.++++ .+++. ..+ .++.++++.
T Consensus 222 v~~~~---~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~--~~v~v~~~~ 279 (286)
T 1q7f_A 222 IADNH---NNFNLTIFTQDG-QLISALESKVKHAQCFDVALMDDGSVVLA-SKD--YRLYIYRYV 279 (286)
T ss_dssp EEECS---SSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT--TEEEEEECS
T ss_pred EEeCC---CCEEEEEECCCC-CEEEEEcccCCCCcceeEEECCCCcEEEE-CCC--CeEEEEEcc
Confidence 66543 123788888654 22221222222223456677665 45544 333 467777765
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.14 Score=48.68 Aligned_cols=158 Identities=6% Similarity=-0.026 Sum_probs=90.3
Q ss_pred CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeC
Q 006375 174 DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSELLACPV 252 (648)
Q Consensus 174 ~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 252 (648)
..|.-++.++ |+ .|+++....+.+.|..+|+++++ ...-.+-... +-..+.++|+.||.++..+ ..++++|.
T Consensus 42 ~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgk-v~~~~~l~~~~FgeGit~~g~~ly~ltw~~----~~v~v~D~ 114 (262)
T 3nol_A 42 KAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGK-TLQQIELGKRYFGEGISDWKDKIVGLTWKN----GLGFVWNI 114 (262)
T ss_dssp TCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCC-EEEEEECCTTCCEEEEEEETTEEEEEESSS----SEEEEEET
T ss_pred CcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCc-EEEEEecCCccceeEEEEeCCEEEEEEeeC----CEEEEEEC
Confidence 3455677777 55 67776666667899999999998 3221111111 1123677899999997752 48999999
Q ss_pred CCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCC---CeeeeeCCCCcc
Q 006375 253 DNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFID---PVYSIDPSESVF 329 (648)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~---~~~~v~~~~~~~ 329 (648)
++..... .++.... -.++..+++.+++. ++..+|++++..+ .++. ..|.... +...+..+.+
T Consensus 115 ~t~~~~~-ti~~~~e--G~glt~dg~~L~~S---dGs~~i~~iDp~T--~~v~-----~~I~V~~~g~~~~~lNELe~-- 179 (262)
T 3nol_A 115 RNLRQVR-SFNYDGE--GWGLTHNDQYLIMS---DGTPVLRFLDPES--LTPV-----RTITVTAHGEELPELNELEW-- 179 (262)
T ss_dssp TTCCEEE-EEECSSC--CCCEEECSSCEEEC---CSSSEEEEECTTT--CSEE-----EEEECEETTEECCCEEEEEE--
T ss_pred ccCcEEE-EEECCCC--ceEEecCCCEEEEE---CCCCeEEEEcCCC--CeEE-----EEEEeccCCccccccceeEE--
Confidence 8744333 3332221 23556667666544 3567888887763 2211 2222211 0001111222
Q ss_pred cccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 330 SSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 330 ~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
.+..+++ +.+ ....++++|+++|+
T Consensus 180 ~~G~lya--n~w-~~~~I~vIDp~tG~ 203 (262)
T 3nol_A 180 VDGEIFA--NVW-QTNKIVRIDPETGK 203 (262)
T ss_dssp ETTEEEE--EET-TSSEEEEECTTTCB
T ss_pred ECCEEEE--EEc-cCCeEEEEECCCCc
Confidence 2345553 333 34589999999998
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.15 Score=48.51 Aligned_cols=152 Identities=11% Similarity=0.046 Sum_probs=86.9
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
.++.++ |+.|..+.-..| +|.++|+++|+.+...++.....-.-++++ +||... ++...++.+|..+.+
T Consensus 58 qGL~~~--~~~Ly~stG~~g----~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~lt----w~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 58 QGLVFH--QGHFFESTGHQG----TLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLT----WTEGLLFTWSGMPPQ 127 (268)
T ss_dssp EEEEEE--TTEEEEEETTTT----EEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEE----SSSCEEEEEETTTTE
T ss_pred ceEEEE--CCEEEEEcCCCC----EEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEE----ccCCEEEEEECCcCc
Confidence 456665 455544443334 399999999997653343332223346677 776553 445679999998863
Q ss_pred CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce------eeeEeecCCEEEEE
Q 006375 163 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV------DTAASHRGNHFFIT 236 (648)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~------~~~~s~dg~~l~~~ 236 (648)
.+.-+.-....+ ..++||+.|+++ + +++.|+.+|.++.+....+.-...+. +..|. +| .||..
T Consensus 128 --~~~ti~~~~eGw----GLt~Dg~~L~vS-d--Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyan 196 (268)
T 3nok_A 128 --RERTTRYSGEGW----GLCYWNGKLVRS-D--GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYAN 196 (268)
T ss_dssp --EEEEEECSSCCC----CEEEETTEEEEE-C--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEE
T ss_pred --EEEEEeCCCcee----EEecCCCEEEEE-C--CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEE
Confidence 222222222223 245788888764 3 47899999999887222222211111 12233 45 67755
Q ss_pred eccCCCCCcEEEEEeCCCCCccee
Q 006375 237 RRSDELFNSELLACPVDNTSETTV 260 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~ 260 (648)
... . -.|.++|.+++....+
T Consensus 197 vw~---s-~~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 197 IWH---S-SDVLEIDPATGTVVGV 216 (268)
T ss_dssp ETT---C-SEEEEECTTTCBEEEE
T ss_pred ECC---C-CeEEEEeCCCCcEEEE
Confidence 443 2 3899999987543333
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.53 Score=48.61 Aligned_cols=184 Identities=8% Similarity=0.056 Sum_probs=101.9
Q ss_pred EeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCC
Q 006375 87 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSN 164 (648)
Q Consensus 87 ~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~ 164 (648)
.+++||++|+.... +| .|+++|+.+++...... .+....++| |+.++++...+ ..|..+++.++ +
T Consensus 138 ~~~~d~~~l~~g~~-dg----~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~d----g~i~vwd~~~~--~ 204 (435)
T 1p22_A 138 CLQYDDQKIVSGLR-DN----TIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSD----STVRVWDVNTG--E 204 (435)
T ss_dssp EEECCSSEEEEEES-SS----CEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETT----SCEEEEESSSC--C
T ss_pred EEEECCCEEEEEeC-CC----eEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCC----CeEEEEECCCC--c
Confidence 45679999887654 33 69999999988654211 122334666 77444554422 34888888876 2
Q ss_pred cEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCcee--EeeecccceeeeEeecCCEEEEEeccCCC
Q 006375 165 DICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR--VLTPRVVGVDTAASHRGNHFFITRRSDEL 242 (648)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~--~l~~~~~~~~~~~s~dg~~l~~~~~~~~~ 242 (648)
....+... ......+.+++ ..++..+. +..|.++|+.++.... ............++.+++.|+..+..
T Consensus 205 ~~~~~~~h-~~~v~~l~~~~--~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d--- 275 (435)
T 1p22_A 205 MLNTLIHH-CEAVLHLRFNN--GMMVTCSK---DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD--- 275 (435)
T ss_dssp EEEEECCC-CSCEEEEECCT--TEEEEEET---TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT---
T ss_pred EEEEEcCC-CCcEEEEEEcC--CEEEEeeC---CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCC---
Confidence 33333332 22334556653 45544332 3568888988776221 12111122223355578877665543
Q ss_pred CCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 243 FNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
..|...|+.+..... .+.... ..+..+.+.++.++... .++ .+.++++..
T Consensus 276 --g~i~vwd~~~~~~~~-~~~~~~-~~v~~~~~~~~~l~~g~-~dg--~i~iwd~~~ 325 (435)
T 1p22_A 276 --RTIKVWNTSTCEFVR-TLNGHK-RGIACLQYRDRLVVSGS-SDN--TIRLWDIEC 325 (435)
T ss_dssp --SEEEEEETTTCCEEE-EEECCS-SCEEEEEEETTEEEEEE-TTS--CEEEEETTT
T ss_pred --CeEEEEECCcCcEEE-EEcCCC-CcEEEEEeCCCEEEEEe-CCC--eEEEEECCC
Confidence 468888887633222 333222 23566777766655444 343 577888874
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.74 Score=51.61 Aligned_cols=154 Identities=10% Similarity=-0.011 Sum_probs=96.5
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
.++++.+.++.|.++-... .+|++.++++.......... .-..++..|.+ .||++-. +...+|++.++++
T Consensus 474 ~GLAvD~~~~~LY~tD~~~----~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~---g~~~~I~~~~~dG 546 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVL----GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW---GTPAKIKKGGLNG 546 (791)
T ss_dssp CEEEEETTTTEEEEEETTT----TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC---SSSCEEEEEETTS
T ss_pred ceeeeeecCCcEEEEecCC----CeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecC---CCCCeEEEEecCC
Confidence 3678888898876664333 37999999876654322111 13458888886 7776542 2235799999876
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc--ceeeeEeecCCEEEEEec
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV--GVDTAASHRGNHFFITRR 238 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~--~~~~~~s~dg~~l~~~~~ 238 (648)
. ..+.+.. ..-.+-.+++++++++.|++.. .....|+++++++.. .+.+..... ..-+.++.+++.||++-.
T Consensus 547 ~--~~~~lv~-~~l~~P~GLavD~~~~~LYwaD--~~~~~I~~~d~dG~~-~~~v~~~~~~l~~P~glav~~~~lYwtD~ 620 (791)
T 3m0c_C 547 V--DIYSLVT-ENIQWPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTDI 620 (791)
T ss_dssp C--CEEEEEC-SSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEETTEEEEEET
T ss_pred C--ceEEEEe-CCCCCceEEEEecCCCeEEEEe--CCCCcEEEEecCCCc-eEEEecCCCccCCCCEEEEeCCEEEEEEC
Confidence 4 2333333 2234455778888888888753 234789999998876 444443211 122346667788877643
Q ss_pred cCCCCCcEEEEEeCCC
Q 006375 239 SDELFNSELLACPVDN 254 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~ 254 (648)
. +.+|++++..+
T Consensus 621 ~----~~~I~~~dk~t 632 (791)
T 3m0c_C 621 I----NEAIFSANRLT 632 (791)
T ss_dssp T----TTEEEEEETTT
T ss_pred C----CCEEEEEeCCC
Confidence 2 46888888654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.32 Score=48.35 Aligned_cols=118 Identities=11% Similarity=0.042 Sum_probs=59.7
Q ss_pred cEEEeeEEeCCC----CCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc---cCccceeEEecCC---------------
Q 006375 80 FYSVGCFQVSPD----NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---VGVTASVEWAGNE--------------- 137 (648)
Q Consensus 80 ~~~~~~~~~SPD----G~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~---~~~~~~~~WspDg--------------- 137 (648)
.-.+..+.+||| +++++-.. .++.|+++.+|+.+.... ......++++|||
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g-------~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~ 183 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSG-------NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETI 183 (356)
T ss_dssp EEEEEEECC------CCEEEEEEE-------EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCE
T ss_pred ccceEEEEECCCccccccEEEeCC-------CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceee
Confidence 457788999999 88888743 224444555444332211 1111223334443
Q ss_pred ----------eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCC--CeEEEEEeCCCCcEEEEEEcc---------c
Q 006375 138 ----------ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDD--IYSLGLQASESKKFLFIASES---------K 196 (648)
Q Consensus 138 ----------~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~s~Dg~~l~~~~~~---------~ 196 (648)
.++.+.. ....|.++++.+++ ....+..+.. ......++||||+.++..+.. .
T Consensus 184 l~fs~~~g~~~~LaSgS----~D~TIkIWDl~TGk--~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTT----IMNNIVIWNLKTGQ--LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp EEEEEEETSTTEEEEEE----TTSEEEEEETTTCC--EEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred EEeeccCCCCceEEEec----CCCcEEEEECCCCc--EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 3333332 23458888998873 3334432221 122345789999988654321 2
Q ss_pred cccEEEEEECCCCC
Q 006375 197 ITRFVFYLDVSKPE 210 (648)
Q Consensus 197 ~~~~l~~~dl~~~~ 210 (648)
....|.++|..+++
T Consensus 258 ~D~tIklWd~~tgk 271 (356)
T 2w18_A 258 PVFQLIVINPKTTL 271 (356)
T ss_dssp CCEEEEEEETTTTE
T ss_pred CCcEEEEEECCCCE
Confidence 23567777887765
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.66 Score=47.90 Aligned_cols=186 Identities=13% Similarity=0.141 Sum_probs=101.2
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCCeEEEEEeCCCCCCceEEEEECCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
+..+.+ ||++|+.... +| .|.++|+.+++...... ......+.|+++ .+ ++... ...|..+++.+
T Consensus 176 v~~l~~--~~~~l~sg~~-dg----~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l-~s~s~----dg~i~vwd~~~ 242 (435)
T 1p22_A 176 VLCLQY--DERVIITGSS-DS----TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MM-VTCSK----DRSIAVWDMAS 242 (435)
T ss_dssp EEEEEC--CSSEEEEEET-TS----CEEEEESSSCCEEEEECCCCSCEEEEECCTT-EE-EEEET----TSCEEEEECSS
T ss_pred EEEEEE--CCCEEEEEcC-CC----eEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-EE-EEeeC----CCcEEEEeCCC
Confidence 344444 8888776543 34 69999999998664211 222344777532 44 44432 23478888877
Q ss_pred CCCCcE-EEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEecc
Q 006375 161 DQSNDI-CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRS 239 (648)
Q Consensus 161 ~~~~~~-~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~ 239 (648)
+..... ..+... ......+.+ ++++|+..+. +..|.++|+.+++....+...... ...+..+++.|+..+..
T Consensus 243 ~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~l~~g~~d 315 (435)
T 1p22_A 243 PTDITLRRVLVGH-RAAVNVVDF--DDKYIVSASG---DRTIKVWNTSTCEFVRTLNGHKRG-IACLQYRDRLVVSGSSD 315 (435)
T ss_dssp SSCCEEEEEECCC-SSCEEEEEE--ETTEEEEEET---TSEEEEEETTTCCEEEEEECCSSC-EEEEEEETTEEEEEETT
T ss_pred CCCceeeeEecCC-CCcEEEEEe--CCCEEEEEeC---CCeEEEEECCcCcEEEEEcCCCCc-EEEEEeCCCEEEEEeCC
Confidence 632211 222222 222334455 7888776543 356899999887622223322222 23344567766555443
Q ss_pred CCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
..|...|+.+..... .+... ...+..+.++++.++.. ..++ .+.++++.
T Consensus 316 -----g~i~iwd~~~~~~~~-~~~~h-~~~v~~~~~~~~~l~sg-~~dg--~i~vwd~~ 364 (435)
T 1p22_A 316 -----NTIRLWDIECGACLR-VLEGH-EELVRCIRFDNKRIVSG-AYDG--KIKVWDLV 364 (435)
T ss_dssp -----SCEEEEETTTCCEEE-EECCC-SSCEEEEECCSSEEEEE-ETTS--CEEEEEHH
T ss_pred -----CeEEEEECCCCCEEE-EEeCC-cCcEEEEEecCCEEEEE-eCCC--cEEEEECC
Confidence 357778887633222 33322 22366677766665444 4444 57778875
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.021 Score=58.71 Aligned_cols=146 Identities=12% Similarity=0.120 Sum_probs=72.2
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc---------------------------ccCccceeEEe
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP---------------------------LVGVTASVEWA 134 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~---------------------------~~~~~~~~~Ws 134 (648)
.+..+.|+|++..+..+...+| +|+++|+.+++..... .......+.|+
T Consensus 188 ~v~~v~~~p~~~~~l~~~~~d~----~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~ 263 (393)
T 4gq1_A 188 PGISVQFRPSNPNQLIVGERNG----NIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI 263 (393)
T ss_dssp CEEEEEEETTEEEEEEEEETTS----EEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE
T ss_pred CcEEEEECCCCCceEEecCCCC----EEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee
Confidence 3457899999976555555555 7999999887643110 00112346776
Q ss_pred -cCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecC-----------------CCeEEEEEeCC-CCcEEEEEEcc
Q 006375 135 -GNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKD-----------------DIYSLGLQASE-SKKFLFIASES 195 (648)
Q Consensus 135 -pDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~s~-Dg~~l~~~~~~ 195 (648)
|||..+++... ...+..+++.++.. ...+.... ........+++ .++.+++...
T Consensus 264 ~~dg~~l~s~s~----d~~i~vwd~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs- 336 (393)
T 4gq1_A 264 GSDGSGILAMCK----SGAWLRWNLFANND--YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS- 336 (393)
T ss_dssp TTTTCEEEEECT----TSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET-
T ss_pred cCCCCEEEEEeC----CCCEEEEECccCCC--CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC-
Confidence 78843344432 23456666655421 11111000 00111122233 2333333222
Q ss_pred ccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEecc
Q 006375 196 KITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRS 239 (648)
Q Consensus 196 ~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~ 239 (648)
.+..|+++|+.++.....+...... ....|+|||+.|+..++.
T Consensus 337 -~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 337 -QHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp -TTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred -CCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 2467899999887622223322222 335699999999887653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.39 Score=47.61 Aligned_cols=199 Identities=9% Similarity=0.009 Sum_probs=103.8
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCC--eeeccc-------cC---ccceeEEecC-CeEEEEEeCCCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT--PVGKPL-------VG---VTASVEWAGN-EALVYITMDEIL 148 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~--~~~~~~-------~~---~~~~~~WspD-g~l~y~~~~~~~ 148 (648)
...++.++|||+ .|..+... ..|+++|.++.. ...... .+ ....++++|+ |.||++.. .
T Consensus 92 ~p~gia~d~~g~--l~v~d~~~---~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~---~ 163 (329)
T 3fvz_A 92 LPHGLSIDTDGN--YWVTDVAL---HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG---Y 163 (329)
T ss_dssp SEEEEEECTTSC--EEEEETTT---TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC---S
T ss_pred CceEEEECCCCC--EEEEECCC---CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC---C
Confidence 456789999999 34455432 379999987653 221100 11 1345899994 57766542 1
Q ss_pred CCceEEEEECCCCCCCcEEEEeecCC---------CeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-
Q 006375 149 RPDKAWLHKLEADQSNDICLYHEKDD---------IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR- 218 (648)
Q Consensus 149 ~~~~l~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~- 218 (648)
....|++++..+. ....+..... ..-.+++++||+..|++.. .....|.+++.++++....+...
T Consensus 164 ~~~~I~~~~~~g~---~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d--~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 164 CNSRIVQFSPSGK---FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD--RENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp SCCEEEEECTTSC---EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE--TTTTEEEEEETTTCCEEEEECCTT
T ss_pred CCCeEEEEcCCCC---EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE--CCCCEEEEEECCCCcEEEEEeccc
Confidence 2356888774332 2333322111 1234678899966666643 24568999999866512222211
Q ss_pred ccc--eeeeEeecCCEEEEEeccC---CCCCcEEEEEeCCCCCcceeEec--CCCCcccceEEEeCCE-EEEEEecCCee
Q 006375 219 VVG--VDTAASHRGNHFFITRRSD---ELFNSELLACPVDNTSETTVLIP--HRESVKLQDIQLFIDH-LAVYEREGGLQ 290 (648)
Q Consensus 219 ~~~--~~~~~s~dg~~l~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-l~~~~~~~~~~ 290 (648)
... ....++| +.++...... +..+.++++++..+..... .+. ......+.++.++.+. +++... +..
T Consensus 239 ~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~-~~~~~~~~~~~p~~ia~~~dG~lyvad~--~~~ 313 (329)
T 3fvz_A 239 FGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIID-VFKPVRKHFDMPHDIVASEDGTVYIGDA--HTN 313 (329)
T ss_dssp TTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEE-EECCSSSCCSSEEEEEECTTSEEEEEES--SSC
T ss_pred cCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEE-EEcCCCCccCCeeEEEECCCCCEEEEEC--CCC
Confidence 111 1223556 3333322110 1234578888876533222 332 1112235567777764 444333 344
Q ss_pred EEEEEEcC
Q 006375 291 KITTYRLP 298 (648)
Q Consensus 291 ~l~v~~~~ 298 (648)
+|++++++
T Consensus 314 ~I~~~~~~ 321 (329)
T 3fvz_A 314 TVWKFTLT 321 (329)
T ss_dssp CEEEEEEE
T ss_pred EEEEEeCC
Confidence 77777776
|
| >1gxs_A P-(S)-hydroxymandelonitrIle lyase chain A; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.012 Score=56.31 Aligned_cols=144 Identities=10% Similarity=0.033 Sum_probs=77.7
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC-CCchh----------------HHHHHHCCCEEE
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNSS----------------RLSLLDRGFIFA 439 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~----------------~~~l~~~G~~v~ 439 (648)
--+.+....+..+-.|++..... ...+.|++|+++||+|.+... ....+ ...|.+ -..++
T Consensus 27 Gyv~v~~~~~~~lFywf~es~~~--~p~~~Pl~lWlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~SW~~-~anll 103 (270)
T 1gxs_A 27 GYVTIDDNNGRALYYWFQEADTA--DPAAAPLVLWLNGGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNK-AANIL 103 (270)
T ss_dssp EEEEEETTTTEEEEEEEECCCSS--CGGGSCEEEEEECTTTBCTTTTHHHHTTSSEEECTTSSCEEECTTCGGG-TSEEE
T ss_pred EEEEcCCCCCcEEEEEEEEecCC--CCCCCCEEEEecCCCcccchhhhhHHhccCceecCCCCcceeCccchhc-cccEE
Confidence 34445445567787775543122 234589999999999976543 11000 012332 36789
Q ss_pred EEccCCCCCCChhhhhcccccCCCCcHhHHHHHHH-HHHHcCCCCCCeEEEEeeChhHHH---HHHHHhhC----CCcee
Q 006375 440 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAE-YLIKNCYCTKEKLCIEGRSAGGLL---IGAVLNMR----PDLFK 511 (648)
Q Consensus 440 ~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l---~~~~~~~~----p~~~~ 511 (648)
.+|.+-+.|+...-...+....-....+|+...++ |+..........+.|+|.| |=++ +..+..+. .-.++
T Consensus 104 fiDqPvGtGfSy~~~~~~~~~~d~~~a~d~~~fl~~f~~~fp~~~~~~~yi~GES-G~yvP~la~~i~~~n~~~~~inLk 182 (270)
T 1gxs_A 104 FAESPAGVGFSYSNTSSDLSMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES-GHFIPQLSQVVYRNRNNSPFINFQ 182 (270)
T ss_dssp EECCSTTSTTCEESSGGGGCCCHHHHHHHHHHHHHHHHHHCGGGTTSEEEEEEEC-TTHHHHHHHHHHHTTTTCTTCEEE
T ss_pred EEeccccccccCCCCCccccCCcHHHHHHHHHHHHHHHHhChhhcCCCEEEEeCC-CcchHHHHHHHHhccccccceeee
Confidence 99965444443221111110110112455555544 4444333445689999999 6443 22333322 12578
Q ss_pred EEEecCCcccccc
Q 006375 512 AAVAAVPFVDVLT 524 (648)
Q Consensus 512 a~v~~~~~~d~~~ 524 (648)
++++..|++|...
T Consensus 183 Gi~ign~~~d~~~ 195 (270)
T 1gxs_A 183 GLLVSSGLTNDHE 195 (270)
T ss_dssp EEEEESCCCBHHH
T ss_pred eEEEeCCccChhh
Confidence 9999999998643
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.22 Score=53.18 Aligned_cols=160 Identities=12% Similarity=0.102 Sum_probs=88.4
Q ss_pred eEEe-C-CCCCEEEEEEeC------C-------CCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCC
Q 006375 85 CFQV-S-PDNKLVAYAEDT------K-------GDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEI 147 (648)
Q Consensus 85 ~~~~-S-PDG~~la~~~~~------~-------G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~ 147 (648)
++.+ + |||++|...... + ......+-++|.++.+.... ...+....++.+||| ++|.+..+..
T Consensus 138 g~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se 217 (595)
T 1fwx_A 138 GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSE 217 (595)
T ss_dssp EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTT
T ss_pred ceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcc
Confidence 5565 6 999998555311 1 23456899999999876643 333333458899999 6655554431
Q ss_pred CC---------------------------------CceEEEEECCCCCCCc-E-EEEeecCCCeEEEEEeCCCCcEEEEE
Q 006375 148 LR---------------------------------PDKAWLHKLEADQSND-I-CLYHEKDDIYSLGLQASESKKFLFIA 192 (648)
Q Consensus 148 ~~---------------------------------~~~l~~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~s~Dg~~l~~~ 192 (648)
.. ...|-.+|..+...+. . .+-....+ .++.+||||+++++
T Consensus 218 ~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P---hGv~~sPDGk~v~V- 293 (595)
T 1fwx_A 218 KGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP---HGCNMAPDKKHLCV- 293 (595)
T ss_dssp CCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC---CCEEECTTSSEEEE-
T ss_pred cCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc---eEEEEcCCCCEEEE-
Confidence 10 0124555555410011 1 12111112 24678999999986
Q ss_pred EccccccEEEEEECCCCC-----------c-eeEeeecccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 193 SESKITRFVFYLDVSKPE-----------E-LRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 193 ~~~~~~~~l~~~dl~~~~-----------~-~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
.......+.++|+++.+ . ...+..+..-....+++|| .+|.+... ..++.+++++.
T Consensus 294 -~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l----dsqV~kwdi~~ 361 (595)
T 1fwx_A 294 -AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFL----DSQVVKWNIED 361 (595)
T ss_dssp -ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETT----TTEEEEEEHHH
T ss_pred -eCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEec----CCcEEEEEhhH
Confidence 44456788899988531 0 0111111111234589999 65544433 24677777643
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.56 Score=45.16 Aligned_cols=233 Identities=12% Similarity=0.020 Sum_probs=120.0
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc---CccceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~---~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
...++.+++||+. |..+..+ ..|.++|.+ ++......+ .....+++.++|.+++... ....|++++.
T Consensus 21 ~p~~i~~d~~g~l--~v~~~~~---~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~v~~~d~ 90 (300)
T 2qc5_A 21 GPYGITSSEDGKV--WFTQHKA---NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTEN----GANKIGKLSK 90 (300)
T ss_dssp CEEEEEECTTSCE--EEEETTT---TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEET----TTTEEEEECT
T ss_pred CcceeeECCCCCE--EEEcCCC---CeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEec----CCCeEEEECC
Confidence 3457788999983 3333322 268888988 665432222 2234578888887766542 1245888876
Q ss_pred CCCCCCcEEEEeec-CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEee-ecc-cc-eeeeEeecCCEEE
Q 006375 159 EADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-PRV-VG-VDTAASHRGNHFF 234 (648)
Q Consensus 159 ~~~~~~~~~~~~~~-~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~-~~~-~~-~~~~~s~dg~~l~ 234 (648)
. + + ...+... ......++..+++|+.. +... ....|+++|.+ ++ ...+. +.. .. ....++++|+ ||
T Consensus 91 ~-g--~-~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~--~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~d~~g~-l~ 160 (300)
T 2qc5_A 91 K-G--G-FTEYPLPQPDSGPYGITEGLNGDIW-FTQL--NGDRIGKLTAD-GT-IYEYDLPNKGSYPAFITLGSDNA-LW 160 (300)
T ss_dssp T-S--C-EEEEECSSTTCCEEEEEECSTTCEE-EEET--TTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSS-EE
T ss_pred C-C--C-eEEecCCCCCCCCccceECCCCCEE-EEcc--CCCeEEEECCC-CC-EEEccCCCCCCCceeEEECCCCC-EE
Confidence 6 3 1 2222221 12234467788888743 3322 24579999987 54 33332 111 11 2234677787 77
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCCCCCcccccCCCcee
Q 006375 235 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSV 313 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i 313 (648)
+.... +..|++++..+ .......+ .....+.++..+.+ .+++..... ..+.+++.+ +.. . ..
T Consensus 161 v~~~~----~~~i~~~~~~g-~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~--~~i~~~~~~--g~~-~------~~ 223 (300)
T 2qc5_A 161 FTENQ----NNSIGRITNTG-KLEEYPLP-TNAAAPVGITSGNDGALWFVEIMG--NKIGRITTT--GEI-S------EY 223 (300)
T ss_dssp EEETT----TTEEEEECTTC-CEEEEECS-STTCCEEEEEECTTSSEEEEETTT--TEEEEECTT--CCE-E------EE
T ss_pred EEecC----CCeEEEECCCC-cEEEeeCC-CCCCCcceEEECCCCCEEEEccCC--CEEEEEcCC--CcE-E------EE
Confidence 66543 24788888733 22221222 22223556666654 444443322 356666653 331 1 12
Q ss_pred ecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 314 EFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 314 ~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
.++.......++..+.++. +++... ....++++++ +++
T Consensus 224 ~~~~~~~~~~~i~~d~~g~-l~v~~~---~~~~i~~~~~-~g~ 261 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSE-IWFTEW---GANQIGRITN-DNT 261 (300)
T ss_dssp ECSSTTCCEEEEEECSTTC-EEEEET---TTTEEEEECT-TSC
T ss_pred ECCCCCCCceEEEECCCCC-EEEecc---CCCeEEEECC-CCc
Confidence 2221111122234445555 554432 2467999988 455
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.016 Score=64.49 Aligned_cols=195 Identities=5% Similarity=0.004 Sum_probs=109.4
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC----CCeeeccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET----GTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~----g~~~~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
.++.|++++..|.|+ +..+ ..|+++++++ .........+ ...++++.+.+ .||++- .....|+++
T Consensus 409 ~gla~d~~~~~Ly~s-D~~~---~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD----~~~~~I~v~ 480 (699)
T 1n7d_A 409 VALDTEVASNRIYWS-DLSQ---RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD----SVLGTVSVA 480 (699)
T ss_dssp CCCEEETTTTEEEEC-CTTT---TSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECC----TTTSCEEEE
T ss_pred EEEccccccCeEEEE-ecCC---CeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEe----ccCCeEEEE
Confidence 467888888876555 3332 2688888876 2221111111 12346766556 776542 223458888
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEee-ecccc-eeeeEeecCCEEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT-PRVVG-VDTAASHRGNHFF 234 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~-~~~~~-~~~~~s~dg~~l~ 234 (648)
++.+. ....+.... ...-.+++++|++.+|+++. ......|+++++++.. .+.+. ..... ....|+++++.||
T Consensus 481 d~dg~--~~~~l~~~~-~~~P~giavDp~~g~ly~td-~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY 555 (699)
T 1n7d_A 481 DTKGV--KRKTLFREQ-GSKPRAIVVDPVHGFMYWTD-WGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLY 555 (699)
T ss_dssp BSSSC--CEEEECCCS-SCCCCCEECCSSSSCCEECC-CSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEE
T ss_pred ecCCC--ceEEEEeCC-CCCcceEEEccCCCcEEEcc-cCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEE
Confidence 87754 223333221 11123567888888887643 2233689999987754 33332 22111 2245888888888
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcceeEecCC-CCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 235 ITRRSDELFNSELLACPVDNTSETTVLIPHR-ESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
++-.. +.+|.++++++ ...+.++... ......++.++++++|+.... ..+|.+++..
T Consensus 556 ~aD~~----~~~I~~~d~dG-~~~~~~~~~~~~~~~P~glavd~~~lywtd~~--~~~V~~~d~~ 613 (699)
T 1n7d_A 556 WVDSK----LHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFEDKVFWTDII--NEAIFSANRL 613 (699)
T ss_dssp EEETT----TTEEEEECSSS-SCCEEECCCSSSCSSCCCCEEETTEEEEECST--TTCEEEEETT
T ss_pred EEecC----CCeEEEEccCC-CceEEEEecCCcCCCceEeEEECCEEEEEeCC--CCeEEEEEcc
Confidence 87543 46899999875 3333343321 112355677888877766533 3467777654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.087 Score=52.87 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=69.2
Q ss_pred EeeEEeCCCCCEEEEEEeC-CCCeEEEEEEEECCCCCeeecc-----cc---CccceeEEecCCeEEEEEeCC-CCCCce
Q 006375 83 VGCFQVSPDNKLVAYAEDT-KGDEIYTVYVIDIETGTPVGKP-----LV---GVTASVEWAGNEALVYITMDE-ILRPDK 152 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~-~G~e~~~l~v~dl~~g~~~~~~-----~~---~~~~~~~WspDg~l~y~~~~~-~~~~~~ 152 (648)
..++.+||||+.++ +..+ .+. ..+|+.++ +|+..+.. .. .....+++++||.|+++-... .....+
T Consensus 19 p~~va~~~~g~~~v-~~~~~~~~-~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 19 PGNITLTPDGRLFL-SLHQFYQP-EMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp EEEEEECTTSCEEE-EECGGGCC-SCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred cceEEECCCCCEEE-EeCCCCCC-ceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 35788999998633 3222 111 25777777 55544211 00 113458899999876653210 001356
Q ss_pred EEEEECCCCCCCcEEEEeecC-----CCeEEEEEeCCCCcEEEEEEccc-cccEEEEEECCCCC
Q 006375 153 AWLHKLEADQSNDICLYHEKD-----DIYSLGLQASESKKFLFIASESK-ITRFVFYLDVSKPE 210 (648)
Q Consensus 153 l~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~s~Dg~~l~~~~~~~-~~~~l~~~dl~~~~ 210 (648)
|+++++.++. ....+.-+. ..+..++.+++++..++++..+. ....|+++|+++++
T Consensus 95 i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 95 LVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp EEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred EEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 9999988762 122232211 12334677888777777654321 45789999998776
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.35 Score=48.47 Aligned_cols=137 Identities=11% Similarity=0.121 Sum_probs=75.5
Q ss_pred EEEEEECCC--CCeeeccccC--------ccceeEEec--CC--eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecC
Q 006375 108 TVYVIDIET--GTPVGKPLVG--------VTASVEWAG--NE--ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKD 173 (648)
Q Consensus 108 ~l~v~dl~~--g~~~~~~~~~--------~~~~~~Wsp--Dg--~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 173 (648)
.|+++|+++ ++.....+.+ .-.++...+ || +||.+........-+|+.++.+++ ....+-+-.+
T Consensus 84 ~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g 161 (355)
T 3sre_A 84 KILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRH 161 (355)
T ss_dssp EEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT--EEEEEEEECC
T ss_pred eEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC--EEEEEecccc
Confidence 799999984 3433322222 123455544 56 454443332234456788877654 2222322222
Q ss_pred CC--eEEEEEeCCCCcEEEEEEcc---------------ccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEE
Q 006375 174 DI--YSLGLQASESKKFLFIASES---------------KITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFI 235 (648)
Q Consensus 174 ~~--~~~~~~~s~Dg~~l~~~~~~---------------~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~ 235 (648)
.. ..-++...+||++.+ +... .....||++|.. + .+.+...... .-..|||||+.||+
T Consensus 162 ~~~~~pND~~v~~~G~fyv-t~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 162 KLLPSVNDIVAVGPEHFYA-TNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp TTCSSEEEEEEEETTEEEE-EESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred CCCCCCceEEEeCCCCEEe-cCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEeecCCcccCcceECCCCCEEEE
Confidence 22 234677888997543 3210 123689999873 3 4555433221 22459999999998
Q ss_pred EeccCCCCCcEEEEEeCCC
Q 006375 236 TRRSDELFNSELLACPVDN 254 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~ 254 (648)
.... ..+|++++++.
T Consensus 238 adt~----~~~I~~~~~~~ 252 (355)
T 3sre_A 238 AELL----AHKIHVYEKHA 252 (355)
T ss_dssp EEGG----GTEEEEEEECT
T ss_pred EeCC----CCeEEEEEECC
Confidence 8664 25788888753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.64 Score=44.72 Aligned_cols=189 Identities=11% Similarity=0.104 Sum_probs=101.0
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc---CccceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~---~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
....+.++++|+. |..+..+ ..|+++|.+ ++......+ .....++..++|.++++... ...|++++.
T Consensus 63 ~~~~i~~~~~g~l--~v~~~~~---~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~ 132 (300)
T 2qc5_A 63 KVMCLIVSSLGDI--WFTENGA---NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLN----GDRIGKLTA 132 (300)
T ss_dssp CEEEEEECTTSCE--EEEETTT---TEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETT----TTEEEEECT
T ss_pred cceeEEECCCCCE--EEEecCC---CeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccC----CCeEEEECC
Confidence 4567888999984 3333322 268888988 655432222 22345778888877665431 245888876
Q ss_pred CCCCCCcEEEEeec-CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-ccc-c-eeeeEeecCCEEE
Q 006375 159 EADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVV-G-VDTAASHRGNHFF 234 (648)
Q Consensus 159 ~~~~~~~~~~~~~~-~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~-~-~~~~~s~dg~~l~ 234 (648)
. + + ...+... .......+.++++|+ |++... ....|+++|. +++ ...+.. ... . ....++++| .||
T Consensus 133 ~-g--~-~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~d~~g-~l~ 202 (300)
T 2qc5_A 133 D-G--T-IYEYDLPNKGSYPAFITLGSDNA-LWFTEN--QNNSIGRITN-TGK-LEEYPLPTNAAAPVGITSGNDG-ALW 202 (300)
T ss_dssp T-S--C-EEEEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCC-EEEEECSSTTCCEEEEEECTTS-SEE
T ss_pred C-C--C-EEEccCCCCCCCceeEEECCCCC-EEEEec--CCCeEEEECC-CCc-EEEeeCCCCCCCcceEEECCCC-CEE
Confidence 5 3 1 2222211 123344677889998 554332 3467999998 444 333321 111 1 123466766 477
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcC
Q 006375 235 ITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~ 298 (648)
+.... ...|++++..+ .......+.. ...+.++..+++ .+++.... ...+.+++.+
T Consensus 203 v~~~~----~~~i~~~~~~g-~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~--~~~i~~~~~~ 259 (300)
T 2qc5_A 203 FVEIM----GNKIGRITTTG-EISEYDIPTP-NARPHAITAGKNSEIWFTEWG--ANQIGRITND 259 (300)
T ss_dssp EEETT----TTEEEEECTTC-CEEEEECSST-TCCEEEEEECSTTCEEEEETT--TTEEEEECTT
T ss_pred EEccC----CCEEEEEcCCC-cEEEEECCCC-CCCceEEEECCCCCEEEeccC--CCeEEEECCC
Confidence 76553 24788888732 2222223222 223556666654 45444432 2356666653
|
| >4az3_A Lysosomal protective protein 32 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.014 Score=56.61 Aligned_cols=140 Identities=10% Similarity=0.029 Sum_probs=77.3
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchh----------------HHHHHHCCCEEEEEcc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSS----------------RLSLLDRGFIFAIAQI 443 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~----------------~~~l~~~G~~v~~~~~ 443 (648)
.++..++..+..|++..+. .....|+||++-||+|.+.......+ ...|.+ -..++.+|.
T Consensus 27 yv~v~~~~~lFywf~es~~---~p~~~Pl~lWlnGGPGcSS~~g~~~E~GP~~~~~~~~~l~~N~~sW~~-~an~lfiD~ 102 (300)
T 4az3_A 27 YLKGSGSKHLHYWFVESQK---DPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNL-IANVLYLES 102 (300)
T ss_dssp EEECSTTEEEEEEEECCSS---CTTTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSSCEEECTTCGGG-SSEEEEECC
T ss_pred eeecCCCCeEEEEEEEcCC---CCCCCCEEEEECCCCcHHHHHHHHhcCCCceecCCCccccccCccHHh-hhcchhhcC
Confidence 4444566778777554332 23457999999999986542211000 012222 356778887
Q ss_pred CCCCCCChhhhhcccccCCCCcHhHHHHHHH-HHHHcCCCCCCeEEEEeeChhHHHHHHHHh---hCCC-ceeEEEecCC
Q 006375 444 RGGGELGRQWYENGKFLKKKNTFTDFIACAE-YLIKNCYCTKEKLCIEGRSAGGLLIGAVLN---MRPD-LFKAAVAAVP 518 (648)
Q Consensus 444 rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~---~~p~-~~~a~v~~~~ 518 (648)
+-+.|+...-... ..........|+...++ |+.....-....+.|+|.|+||..+-.++. +.+. -++++++..|
T Consensus 103 PvGtGfSy~~~~~-~~~~~~~~a~d~~~fl~~f~~~fp~~~~~~~yi~GESY~G~yvP~~a~~i~~~~~inLkG~~iGNg 181 (300)
T 4az3_A 103 PAGVGFSYSDDKF-YATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNG 181 (300)
T ss_dssp STTSTTCEETTCC-CCCBHHHHHHHHHHHHHHHHHHCGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESC
T ss_pred CCcccccccCCCc-ccccchhhHHHHHHHHHHHHHhChhhcCCceEEEecCCceeeHHHHHHHHHhCCCcccccceecCC
Confidence 7555554321110 00000112234443333 344433334578999999999996644432 2232 5789999999
Q ss_pred cccccc
Q 006375 519 FVDVLT 524 (648)
Q Consensus 519 ~~d~~~ 524 (648)
++|...
T Consensus 182 ~~d~~~ 187 (300)
T 4az3_A 182 LSSYEQ 187 (300)
T ss_dssp CSBHHH
T ss_pred ccCHHH
Confidence 998643
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.46 Score=52.63 Aligned_cols=165 Identities=10% Similarity=0.056 Sum_probs=94.8
Q ss_pred eEEeCCCCCE---EEEEEeCCCCeEEEEEEEECCC--CCeeeccccCccceeEEecCCeEEEEE-eCC-----CCCCceE
Q 006375 85 CFQVSPDNKL---VAYAEDTKGDEIYTVYVIDIET--GTPVGKPLVGVTASVEWAGNEALVYIT-MDE-----ILRPDKA 153 (648)
Q Consensus 85 ~~~~SPDG~~---la~~~~~~G~e~~~l~v~dl~~--g~~~~~~~~~~~~~~~WspDg~l~y~~-~~~-----~~~~~~l 153 (648)
+...++|+++ ..+.....+.....+|+++++. ++......+.- ..+.++.++++++.. .+- .....+|
T Consensus 244 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (711)
T 4hvt_A 244 SAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD-ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSL 322 (711)
T ss_dssp EEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT-CEEEEEETTEEEEECSSCEEETTEEECTTCE
T ss_pred EEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc-ceEeeeECCEEEEEECcccccccccCCCCeE
Confidence 4567889885 2333322233347899999874 44343333332 335677888665533 221 1135679
Q ss_pred EEEECCCCC------CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeE-ee-eccccee-
Q 006375 154 WLHKLEADQ------SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRV-LT-PRVVGVD- 223 (648)
Q Consensus 154 ~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~-l~-~~~~~~~- 223 (648)
+..++.++. .+.+.++.........++.|+.| +|++.......+.|+++++.+++ ..+. +. +....+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~ 400 (711)
T 4hvt_A 323 VALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD--RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFG 400 (711)
T ss_dssp EEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEE
T ss_pred EEEECCcccccccccccceEEECCCCCCeEEEEEEECC--EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEE
Confidence 999987642 23344554443444557788876 46676676777899999987663 1233 32 2111222
Q ss_pred eeEeecCCEEEEEeccCCCCCcEEEEEeCC
Q 006375 224 TAASHRGNHFFITRRSDELFNSELLACPVD 253 (648)
Q Consensus 224 ~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~ 253 (648)
...+++++.+++...... .-..++.+++.
T Consensus 401 ~~~~~~~~~~~~~~ss~~-~P~~~~~~d~~ 429 (711)
T 4hvt_A 401 MSSYEEEEEALITIENSI-VPPTIYLWVKT 429 (711)
T ss_dssp EECCTTCSCEEEEEECSS-SCCEEEEECTT
T ss_pred EeecCcCCEEEEEEecCC-CCCEEEEEeCC
Confidence 234577777777655422 33589999876
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.34 Score=47.88 Aligned_cols=158 Identities=10% Similarity=0.033 Sum_probs=86.6
Q ss_pred EeeEEeCC-CCCEEEEEEeCC--------------CCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeC
Q 006375 83 VGCFQVSP-DNKLVAYAEDTK--------------GDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMD 145 (648)
Q Consensus 83 ~~~~~~SP-DG~~la~~~~~~--------------G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~ 145 (648)
...+.+.| ||+. |..+.. +.....|+.+|.++++.... ........++|+||| .+|++..
T Consensus 128 p~~i~~d~~~G~l--~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~- 204 (322)
T 2fp8_A 128 LYAVTVDQRTGIV--YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEF- 204 (322)
T ss_dssp EEEEEECTTTCCE--EEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEG-
T ss_pred cceEEEecCCCEE--EEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeC-
Confidence 45688999 9963 443432 11235799999988865422 111123459999999 5655432
Q ss_pred CCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcc--------ccccEEEEEECCCCCceeEeee
Q 006375 146 EILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES--------KITRFVFYLDVSKPEELRVLTP 217 (648)
Q Consensus 146 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~--------~~~~~l~~~dl~~~~~~~~l~~ 217 (648)
...+|+++++.+.......++... +. -.++..++||+ |++.... .....|+++|.++.. ...+..
T Consensus 205 ---~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~-~~~~~~ 277 (322)
T 2fp8_A 205 ---LSHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNI-LEVIPL 277 (322)
T ss_dssp ---GGTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCE-EEEEEC
T ss_pred ---CCCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCE-EEEEEC
Confidence 235699999876432233333332 22 44678899997 5554433 124678999876432 333322
Q ss_pred ccc---ceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 218 RVV---GVDTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 218 ~~~---~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
... .....+..+++.||+.+.. +..|.+++++.
T Consensus 278 ~~g~~~~~~~~~~~~~g~L~v~~~~----~~~i~~~~~~~ 313 (322)
T 2fp8_A 278 PPPFAGEHFEQIQEHDGLLYIGTLF----HGSVGILVYDK 313 (322)
T ss_dssp CTTTTTSCCCEEEEETTEEEEECSS----CSEEEEEEC--
T ss_pred CCCCccccceEEEEeCCEEEEeecC----CCceEEEeccc
Confidence 111 1111122346678877543 24788887753
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.72 Score=44.30 Aligned_cols=232 Identities=13% Similarity=0.065 Sum_probs=119.9
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc---CccceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~---~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+.++.++|||+.. ..+..+ ..|+++|.+ ++......+ .....+++.+||.++++... ...|++++.
T Consensus 16 ~~~~i~~d~~g~l~--v~~~~~---~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~ 85 (299)
T 2z2n_A 16 GPYGITVSDKGKVW--ITQHKA---NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENA----ANKIGRITK 85 (299)
T ss_dssp CEEEEEECTTSCEE--EEETTT---TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETT----TTEEEEECT
T ss_pred CccceEECCCCCEE--EEecCC---CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCC----CCeEEEECC
Confidence 45678889999843 333322 268889988 665432221 22345888898877766431 235888876
Q ss_pred CCCCCCcEEEEeec-CCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-ccc--eeeeEeecCCEEE
Q 006375 159 EADQSNDICLYHEK-DDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG--VDTAASHRGNHFF 234 (648)
Q Consensus 159 ~~~~~~~~~~~~~~-~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-~~~--~~~~~s~dg~~l~ 234 (648)
. + + ...+... ......++.+++||+. ++... ....|+++|. +++ ...+... ... ....++++| .+|
T Consensus 86 ~-g--~-~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~--~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~~~~g-~l~ 155 (299)
T 2z2n_A 86 K-G--I-IKEYTLPNPDSAPYGITEGPNGDI-WFTEM--NGNRIGRITD-DGK-IREYELPNKGSYPSFITLGSDN-ALW 155 (299)
T ss_dssp T-S--C-EEEEECSSTTCCEEEEEECTTSCE-EEEET--TTTEEEEECT-TCC-EEEEECSSTTCCEEEEEECTTS-CEE
T ss_pred C-C--c-EEEEeCCCcCCCceeeEECCCCCE-EEEec--CCceEEEECC-CCC-EEEecCCCCCCCCceEEEcCCC-CEE
Confidence 5 2 1 2223221 1223446778898864 34322 2467999998 554 4333211 111 123466776 477
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcceeE-ecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCCCCCcccccCCCce
Q 006375 235 ITRRSDELFNSELLACPVDNTSETTVL-IPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKS 312 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~ 312 (648)
+.... ...|++++. + +....+ .+.. ...+.++..+.+ .+++.... ...+.+++.+ +. .. .
T Consensus 156 v~~~~----~~~i~~~~~-~-g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~--~~~i~~~~~~--g~-~~------~ 217 (299)
T 2z2n_A 156 FTENQ----NNAIGRITE-S-GDITEFKIPTP-ASGPVGITKGNDDALWFVEII--GNKIGRITTS--GE-IT------E 217 (299)
T ss_dssp EEETT----TTEEEEECT-T-CCEEEEECSST-TCCEEEEEECTTSSEEEEETT--TTEEEEECTT--CC-EE------E
T ss_pred EEeCC----CCEEEEEcC-C-CcEEEeeCCCC-CCcceeEEECCCCCEEEEccC--CceEEEECCC--Cc-EE------E
Confidence 76543 247888887 3 222222 2222 223556666654 34444332 2356666652 33 11 1
Q ss_pred eecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 313 VEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 313 i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+.++.....+.++..+.++. +++... ....++++++ +++
T Consensus 218 ~~~~~~~~~~~~i~~~~~g~-l~v~~~---~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 218 FKIPTPNARPHAITAGAGID-LWFTEW---GANKIGRLTS-NNI 256 (299)
T ss_dssp EECSSTTCCEEEEEECSTTC-EEEEET---TTTEEEEEET-TTE
T ss_pred EECCCCCCCceeEEECCCCC-EEEecc---CCceEEEECC-CCc
Confidence 22221111122334445555 554432 2467999998 454
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.12 Score=50.05 Aligned_cols=156 Identities=6% Similarity=-0.002 Sum_probs=85.4
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-ccc--CccceeEEecCCeEEEEEeCCCCCCceEEEEECCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV--GVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~--~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
....++|||+.|+ + . ...|+.+|. +|+.+-. ... .....+.+++||.+++..... ..+|+.++..+
T Consensus 40 ~~~~~~pdG~ilv-s-~-----~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~---~~~v~~vd~~G 108 (276)
T 3no2_A 40 NSVAATKAGEILF-S-Y-----SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGH---PSTILEVNMKG 108 (276)
T ss_dssp CEEEECTTSCEEE-E-C-----BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST---TEEEEEECTTS
T ss_pred cCeEECCCCCEEE-e-C-----CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCC---CCEEEEEeCCC
Confidence 4667899999877 2 1 125899999 6765532 222 123457899999665654421 23566665432
Q ss_pred CCCCcEEEEe--ec--CC-CeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEE
Q 006375 161 DQSNDICLYH--EK--DD-IYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFI 235 (648)
Q Consensus 161 ~~~~~~~~~~--~~--~~-~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~ 235 (648)
. ...-+. .. .. .....+..++||++++... ....|+.+|.+ ++.................++|..+ +
T Consensus 109 k---~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~---~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~-v 180 (276)
T 3no2_A 109 E---VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF---ATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCL-V 180 (276)
T ss_dssp C---EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET---TTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEE-E
T ss_pred C---EEEEEeccCCCCcccccccCceECCCCCEEEEec---CCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEE-E
Confidence 2 111111 11 00 1112345789999876432 34689999998 5512222221111223356677644 4
Q ss_pred EeccCCCCCcEEEEEeCCCCCcceeEec
Q 006375 236 TRRSDELFNSELLACPVDNTSETTVLIP 263 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 263 (648)
.... +.+|+.+|.++ ++..|.+.
T Consensus 181 ~~~~----~~~v~~~d~~t-G~~~w~~~ 203 (276)
T 3no2_A 181 ACGD----AHCFVQLNLES-NRIVRRVN 203 (276)
T ss_dssp ECBT----TSEEEEECTTT-CCEEEEEE
T ss_pred EeCC----CCeEEEEeCcC-CcEEEEec
Confidence 4332 24799999886 56667543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.027 Score=62.69 Aligned_cols=221 Identities=9% Similarity=0.046 Sum_probs=114.4
Q ss_pred EEEEEECCCCCeeec--cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCC--CCcEEEEeecCCCeEEEEEe
Q 006375 108 TVYVIDIETGTPVGK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ--SNDICLYHEKDDIYSLGLQA 182 (648)
Q Consensus 108 ~l~v~dl~~g~~~~~--~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~ 182 (648)
.|+++++++++.... .... ...++|.+++ .||++-. ...+|+++++.+.. .....+.... ...-.++++
T Consensus 387 ~I~~id~~~~~~~~~~~~~~~-p~gla~d~~~~~Ly~sD~----~~~~I~~~~~~g~~~~~~~~~~i~~~-~~~P~glav 460 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDL----SQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAV 460 (699)
T ss_dssp C-CEECTTSCCEECCSCCCTT-CCCCEEETTTTEEEECCT----TTTSBEEEESCCCCC-CCCCCBCCSC-C--CCCEEC
T ss_pred ceEEEeCCCCcceeeeccCcc-eEEEccccccCeEEEEec----CCCeEEEEecCCCCCCcceEEEEeCC-CCCcceEEE
Confidence 678889888765432 1222 3359999987 7766432 23468888887510 0111111111 011124566
Q ss_pred CCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-ccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee
Q 006375 183 SESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV 260 (648)
Q Consensus 183 s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (648)
.+.++.|+++ ......|+++++++.. .+.+... ... ....++|++++||++... .+.+|+++++++ ...+.
T Consensus 461 D~~~g~LY~t--D~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~---~~~~I~~~~~dG-~~~~~ 533 (699)
T 1n7d_A 461 DWIHSNIYWT--DSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWG---TPAKIKKGGLNG-VDIYS 533 (699)
T ss_dssp CCSSSBCEEC--CTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCCS---SSCCEEBCCSSS-CCCCE
T ss_pred EeeCCcEEEE--eccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEcccC---CCCeEEEEeCCC-CCeeE
Confidence 6666666653 2334679999998765 4444321 111 224577888888766432 235899988875 22332
Q ss_pred EecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEE
Q 006375 261 LIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHY 338 (648)
Q Consensus 261 ~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ 338 (648)
++.... ....++.++. +.||+.-. ...+|.+++++ |...+.+... ...++.| .....+++.++++-
T Consensus 534 l~~~~l-~~PnGlavd~~~~~LY~aD~--~~~~I~~~d~d--G~~~~~~~~~-~~~~~~P------~glavd~~~lywtd 601 (699)
T 1n7d_A 534 LVTENI-QWPNGITLDLLSGRLYWVDS--KLHSISSIDVN--GGNRKTILED-EKRLAHP------FSLAVFEDKVFWTD 601 (699)
T ss_dssp ESCSSC-SSCCCEEECTTTCCEEEEET--TTTEEEEECSS--SSCCEEECCC-SSSCSSC------CCCEEETTEEEEEC
T ss_pred EEeCCC-CCccEEEEeccCCEEEEEec--CCCeEEEEccC--CCceEEEEec-CCcCCCc------eEeEEECCEEEEEe
Confidence 333222 2345677763 45655543 34678888887 4322111100 0001111 12223445444332
Q ss_pred eeCCCCCEEEEEECCCCc
Q 006375 339 SSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 339 ss~~~P~~~~~~d~~~~~ 356 (648)
..-.+|++++..+|+
T Consensus 602 ---~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 602 ---IINEAIFSANRLTGS 616 (699)
T ss_dssp ---STTTCEEEEETTTEE
T ss_pred ---CCCCeEEEEEccCCC
Confidence 334678899887776
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.64 Score=46.71 Aligned_cols=149 Identities=6% Similarity=-0.016 Sum_probs=77.9
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc------cCccceeEEecC---C-eEEEEEeC---CCCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL------VGVTASVEWAGN---E-ALVYITMD---EILR 149 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~------~~~~~~~~WspD---g-~l~y~~~~---~~~~ 149 (648)
-.++.|.|||+ .|..+..| .|++++. +|+.....+ ..-...++++|| + .||++... ....
T Consensus 31 P~~ia~~pdG~--l~V~e~~g----~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 31 PWSIAPLGGGR--YLVTERPG----RLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp EEEEEEEETTE--EEEEETTT----EEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CeEEEEcCCCe--EEEEeCCC----EEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 35788999998 44455555 6777774 444111111 112345899998 5 65544321 1111
Q ss_pred CceEEEEECCCCC--C-CcEEEEee-cC--CCeEEEEEeCCCCcEEEEEEccc-----------cccEEEEEECCCCC--
Q 006375 150 PDKAWLHKLEADQ--S-NDICLYHE-KD--DIYSLGLQASESKKFLFIASESK-----------ITRFVFYLDVSKPE-- 210 (648)
Q Consensus 150 ~~~l~~~~l~~~~--~-~~~~~~~~-~~--~~~~~~~~~s~Dg~~l~~~~~~~-----------~~~~l~~~dl~~~~-- 210 (648)
..+|+++++.... . ..+.++.. +. ....-.+.+.|||+ |+++..+. ....|++++.++.-
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 2568888876531 1 12233331 11 11223578999995 66664321 12479999987641
Q ss_pred -----ceeEeeecccc-eeeeEeecCCEEEEEecc
Q 006375 211 -----ELRVLTPRVVG-VDTAASHRGNHFFITRRS 239 (648)
Q Consensus 211 -----~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~ 239 (648)
....+.....+ ....|+++.+.||+.-+.
T Consensus 183 ~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g 217 (354)
T 3a9g_A 183 DNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHG 217 (354)
T ss_dssp TSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECC
T ss_pred CCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecC
Confidence 01222222211 234588855567777554
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=96.29 E-value=1 Score=46.58 Aligned_cols=185 Identities=14% Similarity=0.057 Sum_probs=100.1
Q ss_pred CCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEE
Q 006375 91 DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICL 168 (648)
Q Consensus 91 DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~ 168 (648)
||++|+.... +| .|+++|+.+++.+... -......+.| |+..+++... ...|..+++.++ +....
T Consensus 248 ~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~--~~~~~ 314 (445)
T 2ovr_B 248 DGRRVVSGAY-DF----MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG--NCIHT 314 (445)
T ss_dssp CSSCEEEEET-TS----CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC--CEEEE
T ss_pred CCCEEEEEcC-CC----EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC--CEEEE
Confidence 7887776543 33 6899999988765421 1222344667 7733344432 234888898876 23333
Q ss_pred EeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec--ccceeeeEeecCCEEEEEeccCCCCCcE
Q 006375 169 YHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR--VVGVDTAASHRGNHFFITRRSDELFNSE 246 (648)
Q Consensus 169 ~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 246 (648)
+.... ..... +++++++++..+. +..|.++|+.+++....+... .......+..+++.|+..+.. ..
T Consensus 315 ~~~~~-~~v~~--~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d-----g~ 383 (445)
T 2ovr_B 315 LTGHQ-SLTSG--MELKDNILVSGNA---DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD-----GT 383 (445)
T ss_dssp ECCCC-SCEEE--EEEETTEEEEEET---TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETT-----SE
T ss_pred EcCCc-ccEEE--EEEeCCEEEEEeC---CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCC-----Ce
Confidence 33222 22222 3446777665432 356889999887622333221 112223355567765544432 46
Q ss_pred EEEEeCCCCCcceeEec---CCCCcccceEEEeCCEEEEE-EecCCe--eEEEEEEcCC
Q 006375 247 LLACPVDNTSETTVLIP---HRESVKLQDIQLFIDHLAVY-EREGGL--QKITTYRLPA 299 (648)
Q Consensus 247 l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~l~v~~~~~ 299 (648)
|...++.++.....+.. ......+..+.+.++..++. ...++. ..+.+++++.
T Consensus 384 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 384 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 88888876433332321 12233466778877765444 444553 4688888763
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.75 Score=43.14 Aligned_cols=160 Identities=10% Similarity=-0.013 Sum_probs=90.1
Q ss_pred CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeC
Q 006375 174 DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSELLACPV 252 (648)
Q Consensus 174 ~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 252 (648)
..|.-++.+++ ..|+.+....+.+.|..+|+++++ ...-.+-... +-..+..+++.||.++..+ ..++++|.
T Consensus 20 ~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgk-v~~~~~l~~~~fgeGi~~~~~~ly~ltw~~----~~v~v~D~ 92 (243)
T 3mbr_X 20 TAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGR-ILQRAEVPPPYFGAGIVAWRDRLIQLTWRN----HEGFVYDL 92 (243)
T ss_dssp TCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCC-EEEEEECCTTCCEEEEEEETTEEEEEESSS----SEEEEEET
T ss_pred ccccccEEEEC--CEEEEECCCCCCceEEEEECCCCC-EEEEEeCCCCcceeEEEEeCCEEEEEEeeC----CEEEEEEC
Confidence 34555777765 567776666677999999999998 3222111111 1123667789999987652 58999998
Q ss_pred CCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCC-CCcccc
Q 006375 253 DNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPS-ESVFSS 331 (648)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~-~~~~~~ 331 (648)
++..... .++.... --++..+++.++++ ++..+|++++..+ .++. ..|........+..+ ...+.+
T Consensus 93 ~tl~~~~-ti~~~~~--Gwglt~dg~~L~vS---dgs~~l~~iDp~t--~~~~-----~~I~V~~~g~~~~~lNeLe~~~ 159 (243)
T 3mbr_X 93 ATLTPRA-RFRYPGE--GWALTSDDSHLYMS---DGTAVIRKLDPDT--LQQV-----GSIKVTAGGRPLDNLNELEWVN 159 (243)
T ss_dssp TTTEEEE-EEECSSC--CCEEEECSSCEEEE---CSSSEEEEECTTT--CCEE-----EEEECEETTEECCCEEEEEEET
T ss_pred CcCcEEE-EEeCCCC--ceEEeeCCCEEEEE---CCCCeEEEEeCCC--CeEE-----EEEEEccCCcccccceeeEEeC
Confidence 7743332 3333221 23555666666654 3567888887763 2211 122221110011100 011224
Q ss_pred cEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 332 RILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 332 ~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
..++ .+.+. ...+.++|+++|+
T Consensus 160 G~ly--anvw~-s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 160 GELL--ANVWL-TSRIARIDPASGK 181 (243)
T ss_dssp TEEE--EEETT-TTEEEEECTTTCB
T ss_pred CEEE--EEECC-CCeEEEEECCCCC
Confidence 4555 33443 3489999999998
|
| >1tib_A Lipase; hydrolase(carboxylic esterase); 1.84A {Thermomyces lanuginosus} SCOP: c.69.1.17 PDB: 1dt3_A 1dt5_A 1du4_A 1ein_A* 1dte_A 4dyh_A* 4ea6_A 1gt6_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.016 Score=56.10 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=66.2
Q ss_pred EEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEE-EccCCCCCCChhhhhcccccCCCCcH
Q 006375 388 QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAI-AQIRGGGELGRQWYENGKFLKKKNTF 466 (648)
Q Consensus 388 ~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~-~~~rG~g~~g~~~~~~~~~~~~~~~~ 466 (648)
.+.+++..+.+ +.-+||.+||-.. ....+.+.++.+.. .+.++++.--+-|... -....
T Consensus 62 ~~~~~v~~~~~------~~~iVva~RGT~~---------~~d~l~d~~~~~~~~~~~~~~~~vh~Gf~~~-----~~~~~ 121 (269)
T 1tib_A 62 DVTGFLALDNT------NKLIVLSFRGSRS---------IENWIGNLNFDLKEINDICSGCRGHDGFTSS-----WRSVA 121 (269)
T ss_dssp TEEEEEEEETT------TTEEEEEECCCSC---------THHHHTCCCCCEEECTTTSTTCEEEHHHHHH-----HHHHH
T ss_pred CcEEEEEEECC------CCEEEEEEeCCCC---------HHHHHHhcCeeeeecCCCCCCCEecHHHHHH-----HHHHH
Confidence 46677666532 2458888998421 23566777888776 5666432111111111 01234
Q ss_pred hHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC---ceeEEEecCCcc
Q 006375 467 TDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAVPFV 520 (648)
Q Consensus 467 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~~~a~v~~~~~~ 520 (648)
+|+...++.+.++.. ..+|.++||||||.+|..++.+... .+.+....+|.+
T Consensus 122 ~~~~~~~~~~~~~~~--~~~i~l~GHSLGGalA~l~a~~l~~~~~~~~~~tfg~P~v 176 (269)
T 1tib_A 122 DTLRQKVEDAVREHP--DYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRV 176 (269)
T ss_dssp HHHHHHHHHHHHHCT--TSEEEEEEETHHHHHHHHHHHHHTTSSSCEEEEEESCCCC
T ss_pred HHHHHHHHHHHHHCC--CceEEEecCChHHHHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 677777777776532 2589999999999999888776432 356666666643
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=1.8 Score=47.17 Aligned_cols=194 Identities=8% Similarity=0.025 Sum_probs=118.3
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
..++.+++++..|.++-...+ .|+.++++++........+ ...+++..+.+ .||++-. ...+|.+.+++
T Consensus 39 ~~~l~~d~~~~~lywtD~~~~----~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~----~~~~I~v~~~d 110 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWTDISLK----TISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADT----GTNRIEVSKLD 110 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTT----EEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET----TTTEEEEEETT
T ss_pred eEEEEEECCCCEEEEEECCCC----eEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEEC----CCCEEEEEecC
Confidence 346788998888766644333 7888898876443211111 22347777676 7766532 33578899987
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEec
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRR 238 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~ 238 (648)
+. ..+.+.... ...-.++++.|...+|+++.. .....|+++++++.. .+.+...... ....++++++.||+.-.
T Consensus 111 G~--~~~~l~~~~-l~~P~~iavdp~~G~lY~tD~-g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 111 GQ--HRQVLVWKD-LDSPRALALDPAEGFMYWTEW-GGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp ST--TCEEEECSS-CCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEET
T ss_pred CC--cEEEEEeCC-CCCcccEEEccCCCeEEEeCC-CCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEEC
Confidence 65 233444222 222346778887778877542 336799999999876 5555433222 22458888888887754
Q ss_pred cCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 239 SDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
. +.+|.++++++.. .+ ++..... ...++..+++++++.-..+ ..|..++..
T Consensus 186 ~----~~~I~~~d~dG~~-~~-v~~~~l~-~P~glav~~~~ly~tD~~~--~~I~~~dk~ 236 (628)
T 4a0p_A 186 D----TNLIESSNMLGLN-RE-VIADDLP-HPFGLTQYQDYIYWTDWSR--RSIERANKT 236 (628)
T ss_dssp T----TTEEEEEETTSCS-CE-EEEECCS-CEEEEEEETTEEEEEETTT--TEEEEEETT
T ss_pred C----CCEEEEEcCCCCc-eE-EeeccCC-CceEEEEECCEEEEecCCC--CEEEEEECC
Confidence 3 3589999997633 33 3333222 3567888888887765433 356666643
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.19 Score=52.25 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=89.6
Q ss_pred EEeeEEeCC-CCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SP-DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
....+.++| ++.. +|..+.. ..|+++|++++...... ....-..++|++|| .||.+..........++..+.
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~----~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQ----HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBT----EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCe-EEEEeCC----CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 345778898 4555 4555543 58999999987755321 11223459999999 566554322222233555554
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc---ceeeeEeecCCEEEE
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV---GVDTAASHRGNHFFI 235 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~---~~~~~~s~dg~~l~~ 235 (648)
.+.. .....+... ....++.++|++.+|++... ...+|++++.+++. ...+..... .....++|+|++||+
T Consensus 213 ~g~~-~~~~~l~~~--~~p~giavdp~~g~lyv~d~--~~~~V~~~~~~~~~-~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 213 ESGF-KVITELTKG--QNCNGAETHPINGELYFNSW--NAGQVFRYDFTTQE-TTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp GGTS-CSEEEEEEC--SSCCCEEECTTTCCEEEEET--TTTEEEEEETTTTE-EEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred CCce-eeeeeeccC--CCceEEEEeCCCCEEEEEEC--CCCEEEEEECCCCc-EEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 4332 111222221 11235678995555666433 34689999998765 423322111 123458999998887
Q ss_pred EeccCCCCCcEEEEEeCCC
Q 006375 236 TRRSDELFNSELLACPVDN 254 (648)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~ 254 (648)
.... +.+|++++.+.
T Consensus 287 ~d~~----~~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVN----QHYILRSDYDW 301 (430)
T ss_dssp EETT----TTEEEEEEEET
T ss_pred EECC----CCEEEEEeCCc
Confidence 7543 35788877653
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.013 Score=58.21 Aligned_cols=95 Identities=12% Similarity=-0.035 Sum_probs=57.3
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
+..|.|+++||+.+... .|......| ++.|+.+++++. ....+++++.+.+..++..- ..
T Consensus 44 ~~~~~l~~~hg~~g~~~--~~~~~~~~l---~~~v~~~~~~~~--------------~~~~~~~~~a~~~~~~i~~~-~~ 103 (316)
T 2px6_A 44 SSERPLFLVHPIEGSTT--VFHSLASRL---SIPTYGLQCTRA--------------APLDSIHSLAAYYIDCIRQV-QP 103 (316)
T ss_dssp CSSCCEEEECCTTCCSG--GGHHHHHHC---SSCEEEECCCTT--------------SCTTCHHHHHHHHHHHHTTT-CS
T ss_pred CCCCeEEEECCCCCCHH--HHHHHHHhc---CCCEEEEECCCC--------------CCcCCHHHHHHHHHHHHHHh-CC
Confidence 34567899999655432 344333333 388999998821 01234556555444444321 11
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCC---Cc---eeEEEecCC
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRP---DL---FKAAVAAVP 518 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p---~~---~~a~v~~~~ 518 (648)
..++.++|+|+||.++..++.+.+ +. ++.+++..+
T Consensus 104 ~~~~~l~G~S~Gg~va~~~a~~l~~~g~~~p~v~~l~li~~ 144 (316)
T 2px6_A 104 EGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDG 144 (316)
T ss_dssp SCCCEEEEETHHHHHHHHHHHHHHHHC---CCCCEEEEESC
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHcCCcccccceEEEEcC
Confidence 367999999999999988887643 34 667766444
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.39 Score=47.99 Aligned_cols=160 Identities=7% Similarity=0.035 Sum_probs=86.9
Q ss_pred cEEEeeEEeCCCCCEEEEEEeCCC--CeEEEEEEEECCCCCeee-cccc-------CccceeEEecCC-eEEEEEeCCCC
Q 006375 80 FYSVGCFQVSPDNKLVAYAEDTKG--DEIYTVYVIDIETGTPVG-KPLV-------GVTASVEWAGNE-ALVYITMDEIL 148 (648)
Q Consensus 80 ~~~~~~~~~SPDG~~la~~~~~~G--~e~~~l~v~dl~~g~~~~-~~~~-------~~~~~~~WspDg-~l~y~~~~~~~ 148 (648)
.....++.++|||+. |..+... .....|+++|+++|+.+. ..++ .....+++++++ .+|+ ......
T Consensus 66 ~~~p~gv~~d~~g~L--~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yv-td~~~~ 142 (343)
T 2qe8_A 66 FDTVLGIKSDGNGIV--WMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYI-SDPAPD 142 (343)
T ss_dssp CSCEEEEEECSSSEE--EEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEE-EECCSG
T ss_pred eeEeeEEEEcCCCcE--EEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEE-EcCccC
Confidence 456778999999973 4555320 002479999999988442 1221 112568899877 5544 432111
Q ss_pred CCceEEEEECCCCCCCcEEEEee----------------------cCC------CeEEEEEeCCCCcEEEEEEccccccE
Q 006375 149 RPDKAWLHKLEADQSNDICLYHE----------------------KDD------IYSLGLQASESKKFLFIASESKITRF 200 (648)
Q Consensus 149 ~~~~l~~~~l~~~~~~~~~~~~~----------------------~~~------~~~~~~~~s~Dg~~l~~~~~~~~~~~ 200 (648)
....|+++++.++. ...+... .+. ....++++||||+.|++.... ...
T Consensus 143 ~~~~i~v~d~~~g~--~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~--~~~ 218 (343)
T 2qe8_A 143 DKAALIRVDLQTGL--AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH--STS 218 (343)
T ss_dssp GGCEEEEEETTTCC--EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS--CSE
T ss_pred CCCeEEEEECCCCC--EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC--CCe
Confidence 23457777776542 1111110 000 113468999999999876542 358
Q ss_pred EEEEECC---CCC--------ceeEeeecccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeC
Q 006375 201 VFYLDVS---KPE--------ELRVLTPRVVG-VDTAASHRGNHFFITRRSDELFNSELLACPV 252 (648)
Q Consensus 201 l~~~dl~---~~~--------~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 252 (648)
||.++.+ .+. .+..+. .... .-..++++|. ||+.... +.+|.+++.
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~~g-~~g~pdgia~d~~G~-l~va~~~----~~~V~~~d~ 276 (343)
T 2qe8_A 219 MYRIKSADLSNLQLTDAELGSKIERYS-EKPICDGISIDKDHN-IYVGDLA----HSAIGVITS 276 (343)
T ss_dssp EEEEEHHHHTCTTCCHHHHHTTCEEEE-ECCSCSCEEECTTCC-EEEEEGG----GTEEEEEET
T ss_pred EEEEEHHHhcCCCCChhhhhcceEecc-cCCCCceEEECCCCC-EEEEccC----CCeEEEEEC
Confidence 9999853 111 011111 1111 1134777764 6655433 347888887
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=2.2 Score=46.53 Aligned_cols=152 Identities=10% Similarity=0.001 Sum_probs=93.7
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEECCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
.++++.+.++.|.++-. .. ..|.+.++++.........+ .-..++..|.+ .||++-. +...+|++.++++
T Consensus 83 ~GlAvD~~~~~LY~tD~-~~---~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~---g~~~~I~r~~~dG 155 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADT-GT---NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW---GGKPKIDRAAMDG 155 (628)
T ss_dssp CEEEEETTTTEEEEEET-TT---TEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC---SSSCEEEEEETTS
T ss_pred ceEEEEeCCCEEEEEEC-CC---CEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC---CCCCEEEEEeCCC
Confidence 36778888888876643 22 38999999876543221111 12358888866 7777542 2356799999877
Q ss_pred CCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccC
Q 006375 161 DQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSD 240 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~ 240 (648)
. ....+.. .-.+-.+++++++++.|++... ....|+.+|+++.. .+.+... ...-+.+..+++.||++-..
T Consensus 156 ~--~~~~l~~--~~~~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~-~~v~~~~-l~~P~glav~~~~ly~tD~~- 226 (628)
T 4a0p_A 156 S--ERTTLVP--NVGRANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLN-REVIADD-LPHPFGLTQYQDYIYWTDWS- 226 (628)
T ss_dssp C--SCEEEEC--SCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCS-CEEEEEC-CSCEEEEEEETTEEEEEETT-
T ss_pred C--ceEEEEC--CCCCcceEEEccccCEEEEEEC--CCCEEEEEcCCCCc-eEEeecc-CCCceEEEEECCEEEEecCC-
Confidence 5 3444443 2344557889999988887543 45789999998865 4433322 12223355566777766432
Q ss_pred CCCCcEEEEEeCCC
Q 006375 241 ELFNSELLACPVDN 254 (648)
Q Consensus 241 ~~~~~~l~~~~~~~ 254 (648)
+..|.++|..+
T Consensus 227 ---~~~I~~~dk~t 237 (628)
T 4a0p_A 227 ---RRSIERANKTS 237 (628)
T ss_dssp ---TTEEEEEETTT
T ss_pred ---CCEEEEEECCC
Confidence 34677777543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 648 | ||||
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 2e-40 | |
| d1qfma1 | 430 | b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-termin | 4e-33 | |
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 4e-18 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 2e-14 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 7e-14 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 9e-14 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 3e-13 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 4e-13 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 7e-12 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 2e-11 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 6e-11 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 2e-10 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 1e-09 | |
| d1ju3a2 | 347 | c.69.1.21 (A:5-351) Bacterial cocaine esterase N-t | 4e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-04 | |
| d1vkha_ | 263 | c.69.1.32 (A:) Putative serine hydrolase Ydr428c { | 0.003 |
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 146 bits (369), Expect = 2e-40
Identities = 92/277 (33%), Positives = 140/277 (50%), Gaps = 8/277 (2%)
Query: 370 DTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRL 429
D ++Y T + + + DGT+IP+ IV++K + KLDGS P LYGYG + I P ++ SRL
Sbjct: 1 DASDYQTVQIFYPSKDGTKIPMFIVHKKGI-KLDGSHPAFLYGYGGFNISITPNYSVSRL 59
Query: 430 SLLDRG-FIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLC 488
+ + A+A IRGGGE G W++ G K+N F DF AEYLIK Y + ++L
Sbjct: 60 IFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLT 119
Query: 489 IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEE 548
I G S GGLL+ N RPDLF +A V +D+L T ++ E
Sbjct: 120 INGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFE 179
Query: 549 FYFYMKSYSPVDNVKAQN--YPHILVTAGLNDPRVMYSEPAKFVAKLRE----MKTDDNI 602
+ V +A + YP +L+ +D RV+ KF+A L+ + +N
Sbjct: 180 WLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNP 239
Query: 603 LLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639
LL + AGH + + + E + + F+ R L++
Sbjct: 240 LLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNI 276
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 430 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 130 bits (326), Expect = 4e-33
Identities = 52/396 (13%), Positives = 112/396 (28%), Gaps = 58/396 (14%)
Query: 1 MFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGP 60
+ S F++G Y+Y + + E
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGE------------- 109
Query: 61 DAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV 120
+ LD N+ ++ G + S D + AY G + T+ + ++ +
Sbjct: 110 ----ARVFLDPNILSDDGTVALRG-YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL 164
Query: 121 GKPLVGVTAS--VEWAGNEALVYITMD-----------EILRPDKAWLHKLEADQSNDIC 167
L V S + + Y K + H L DQS DI
Sbjct: 165 PDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL 224
Query: 168 LYHEKDD-IYSLGLQASESKKFLFIASESKITRF--VFYLDVSKPEEL-------RVLTP 217
D+ + G + S+ +++ ++ ++Y D+ + L
Sbjct: 225 CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284
Query: 218 RVVGVDTAASHRGNHFFITRRSDELFNSELLA--CPVDNTSETTVLIPHRESVKLQDIQL 275
G ++ G F + + + ++ H + V +
Sbjct: 285 NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV 344
Query: 276 FIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE-FIDPVYSIDPSESVFSSRIL 334
+ L + + + L G ++ F V S+ +
Sbjct: 345 RSNFLVLCYLHDVKNTLQLH----------DLATGALLKIFPLEVGSVVGYSGQKKDTEI 394
Query: 335 RFHYSSLRTPPSVYDYDMDMG---ISVLKKIETVLG 367
+ ++S +P +Y D+ V +++ V G
Sbjct: 395 FYQFTSFLSPGIIYHCDLTKEELEPRVFREVT-VKG 429
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.5 bits (202), Expect = 4e-18
Identities = 38/260 (14%), Positives = 79/260 (30%), Gaps = 15/260 (5%)
Query: 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYG---SYEICNDPAFNSSRLSLLDRGFIFAI 440
D +P+ I+ PLLL G S + + + + G +
Sbjct: 10 IDDYNLPMQILKPATFTD-TTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVK 68
Query: 441 AQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIG 500
RG G G + + D + ++K Y + ++ + G+ GG L
Sbjct: 69 CDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLST 128
Query: 501 AVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVD 560
+L + + + +T +E Y K
Sbjct: 129 YILPAKGENQGQTFTCGSALSPITDFKLYASA--FSERYLGLHGLDNRAYEMTKVA---H 183
Query: 561 NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGH-FSKSGR 619
V A L+ D ++ + A+ + +L K + ++ ++ H F+ S
Sbjct: 184 RVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYP---DESHYFTSSSL 240
Query: 620 FERLREAAFTYTFLMRALSM 639
+ L + F + +
Sbjct: 241 KQHLYRS--IINFFVECFRI 258
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 71.8 bits (174), Expect = 2e-14
Identities = 44/268 (16%), Positives = 85/268 (31%), Gaps = 17/268 (6%)
Query: 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYG---SYEICNDPAFNSSRLSLL 432
+++ + T+ ++ + K PLLL Y S + N +
Sbjct: 3 SKKLDFIILNETKFWYQMILPPHFDK-SKKYPLLLDVYAGPCSQKADTVFRLNWATYLAS 61
Query: 433 DRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGR 492
I A RG G G + D I A K + +++ I G
Sbjct: 62 TENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGW 121
Query: 493 SAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFY 552
S GG + VL +FK +A P + + G P E+ +
Sbjct: 122 SYGGYVTSMVLGSGSGVFKCGIAVAP-------VSRWEYYDSVYTERYMGLPTPEDNLDH 174
Query: 553 MKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 612
++ + + + L+ G D V + + A+ L ++ D + +
Sbjct: 175 YRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYT---DED 231
Query: 613 H-FSKSGRFERLREAAFTYTFLMRALSM 639
H + S + + F+ + S+
Sbjct: 232 HGIASSTAHQHIYTH--MSHFIKQCFSL 257
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 70.4 bits (171), Expect = 7e-14
Identities = 35/212 (16%), Positives = 57/212 (26%), Gaps = 16/212 (7%)
Query: 380 WASASDGTQIPICIVYRKNLVKLDGSDPLL--LYGYGSYEICNDPAFNSSRLSLLDRGFI 437
S S G I + + P L L G + + + N+ D+ +
Sbjct: 14 VPSPSMGRDIKVQFQSG------GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGL 67
Query: 438 FAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAE----YLIKNCYCTKEKLCIEGRS 493
+ + G WY+ T+ +L N + + G S
Sbjct: 68 SVVMPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLS 127
Query: 494 AGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEE--WGDPWKEEFYF 551
+ P F A A +D M I L + D W +
Sbjct: 128 MAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDP 187
Query: 552 YMKSYSPVDNVK--AQNYPHILVTAGLNDPRV 581
+ P+ NV N + V G P
Sbjct: 188 AWQRNDPLLNVGKLIANNTRVWVYCGNGKPSD 219
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 70.9 bits (172), Expect = 9e-14
Identities = 39/246 (15%), Positives = 70/246 (28%), Gaps = 23/246 (9%)
Query: 370 DTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLL----YGYGSYEICNDPAFN 425
+N+Y DG ++ IV K + P++L Y
Sbjct: 18 ASNDYIKREVMIPMRDGVKLHTVIVLPKG----AKNAPIVLTRTPYDASGRTERLASPHM 73
Query: 426 SSRLS-----LLDRGFIFAIAQIRGGGELGRQWY-----ENGKFLKKKNTFTDFIACAEY 475
LS ++ G+I +RG + + + TD ++
Sbjct: 74 KDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDW 133
Query: 476 LIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTT 535
L+KN + K+ + G S G + L K AV P +D
Sbjct: 134 LVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMID----GWMGDDWFNY 189
Query: 536 AEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLND-PRVMYSEPAKFVAKLR 594
+ + + + + +Y + L D + E + KL
Sbjct: 190 GAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLT 249
Query: 595 EMKTDD 600
E D
Sbjct: 250 EHAAYD 255
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 68.4 bits (165), Expect = 3e-13
Identities = 36/270 (13%), Positives = 81/270 (30%), Gaps = 15/270 (5%)
Query: 368 GFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSS 427
+ + W + DG+++P ++ P ++ +G + ++++
Sbjct: 4 DLRRSIAGSRLVWVESFDGSRVPTYVLESGR---APTPGPTVVLVHGGPFAEDSDSWDTF 60
Query: 428 RLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKL 487
SL GF + RG G +W D A A + ++ ++ +
Sbjct: 61 AASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYI 120
Query: 488 CIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKE 547
+ K + + L+ A + + +
Sbjct: 121 MGYSYGGYM-------TLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTG 173
Query: 548 EFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKC 607
M+S SP+++V P L+ ND R + + +L +
Sbjct: 174 GSREIMRSRSPINHVDRIKEPLALIHPQ-NDSRTPLKPLLRLMGELLARGKTFEAHIIP- 231
Query: 608 ELGAGHFSKSGRFERLREAAFTYTFLMRAL 637
AGH + + + ++ FL
Sbjct: 232 --DAGH-AINTMEDAVKILLPAVFFLATQR 258
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 68.6 bits (166), Expect = 4e-13
Identities = 44/310 (14%), Positives = 86/310 (27%), Gaps = 35/310 (11%)
Query: 338 YSSLRTPPSVYDYDMDMGISVLKKI----ETVLGGFDTNNYFTERKWASASDGTQIPICI 393
Y +T P + + + L K+ + + + R + +I
Sbjct: 14 YKPEKTAPKDFSEFWKLSLEELAKVQAEPDLQPVDYPADGVKVYRLTYKSFGNARITGWY 73
Query: 394 VYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 453
+G P ++ +G + ++ G+ +RG
Sbjct: 74 AVPDK----EGPHPAIVKYHGYNA--SYDGEIHEMVNWALHGYATFGMLVRGQQRSEDTS 127
Query: 454 YENGKF--------------LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLI 499
+ + D + E + + ++ + G S GG L
Sbjct: 128 ISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLT 187
Query: 500 GAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE----EWGDPWKEEFYFYMKS 555
A + KAAVA P++ +D + E G P E S
Sbjct: 188 IAAAALSDI-PKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLS 246
Query: 556 YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 615
Y + N+ + +L++ GL D S L K + +++ GH
Sbjct: 247 YFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLETKKE---LKVYR---YFGHEY 300
Query: 616 KSGRFERLRE 625
Sbjct: 301 IPAFQTEKLA 310
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 65.1 bits (157), Expect = 7e-12
Identities = 33/273 (12%), Positives = 62/273 (22%), Gaps = 35/273 (12%)
Query: 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLL----YGYGSYEICNDPAFNSSR 428
+Y DG ++ ++ K + P+LL Y A
Sbjct: 25 DYIKREVMVPMRDGVKLY-TVIVIP---KNARNAPILLTRTPYNAKGRANRVPNALTMRE 80
Query: 429 LS------LLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTF-----TDFIACAEYLI 477
+ ++ G+I IRG + N TD ++L+
Sbjct: 81 VLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLV 140
Query: 478 KNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD---------------- 521
N + ++ + G S G + L K A P VD
Sbjct: 141 HNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWMGDDWFHYGAFRQG 200
Query: 522 VLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRV 581
+ D + S + +
Sbjct: 201 AFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAYD 260
Query: 582 MYSEPAKFVAKLREMKTDDNILLFKCELGAGHF 614
+ + L + K +L +
Sbjct: 261 AFWQGQALDKILAQRKPTVPMLWEQGLWDQEDM 293
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 63.6 bits (153), Expect = 2e-11
Identities = 54/299 (18%), Positives = 87/299 (29%), Gaps = 42/299 (14%)
Query: 358 VLKKIETVLGGFDTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE 417
V +++E+ L + S G +I ++ K + P ++ G
Sbjct: 42 VFERMESHLKTVEA-----YDVTFSGYRGQRIKGWLLVPKLE---EEKLPCVVQYIGY-- 91
Query: 418 ICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG-------------------- 457
F L G+I + RG G +
Sbjct: 92 -NGGRGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILD 150
Query: 458 -KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 516
+ + FTD + E +E++ I G S GG + AV + KA +
Sbjct: 151 PRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKK-AKALLCD 209
Query: 517 VPFVDVLTTMLDPTIPLTTAEWEEW--GDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTA 574
VPF+ + AE + KEE F SY N A+ L +
Sbjct: 210 VPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSV 269
Query: 575 GLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFL 633
GL D S K I ++ H G F+ + + F
Sbjct: 270 GLMDNICPPSTVFAAYNYYAGPKE---IRIYP---YNNH-EGGGSFQAVEQVKFLKKLF 321
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 61.5 bits (148), Expect = 6e-11
Identities = 34/210 (16%), Positives = 55/210 (26%), Gaps = 18/210 (8%)
Query: 382 SASDGTQIPICIVYRKNLVKLDGSDPL--LLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 439
SAS G I + G LL G + + N N+ + +
Sbjct: 13 SASMGRDIKVQF--------QGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSV 64
Query: 440 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLI----KNCYCTKEKLCIEGRSAG 495
I + G WY+ + + T+ + N + G S
Sbjct: 65 IMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMS 124
Query: 496 GLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEE--WGDPWKEEFYFYM 553
G + P F A + F++ + I L + W
Sbjct: 125 GGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAW 184
Query: 554 KSYSPVDNVK--AQNYPHILVTAGLNDPRV 581
K P+ + N I V G P
Sbjct: 185 KRNDPMVQIPRLVANNTRIWVYCGNGTPSD 214
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 59.5 bits (143), Expect = 2e-10
Identities = 37/208 (17%), Positives = 66/208 (31%), Gaps = 21/208 (10%)
Query: 382 SASDGTQIPICIVYRKNLVKLDGSDP--LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFA 439
S S G IP+ L G LL + + ++ + ++ L I
Sbjct: 11 SPSMGRDIPVAF--------LAGGPHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISV 62
Query: 440 IAQIRGGGELGRQWYENGKFLKKKNTFTDFIA--CAEYLIKNCYCTKEKLCIEGRSAGGL 497
+A G + W ++G + F++ ++L N G + GG
Sbjct: 63 VAPAGGAYSMYTNWEQDGS-----KQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGY 117
Query: 498 LIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWE--EWGDPWKEEFYFYMKS 555
A+ PD F A + F+ T + I ++ + W K
Sbjct: 118 GAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKW 177
Query: 556 YSPVDNVK--AQNYPHILVTAGLNDPRV 581
+ P + AQN + V + N
Sbjct: 178 HDPWVHASLLAQNNTRVWVWSPTNPGAS 205
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 57.4 bits (138), Expect = 1e-09
Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 3/118 (2%)
Query: 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDP 544
+ + G ++GG + + D+F T+ + +
Sbjct: 11 NSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCA---RNQYYTSCMYNGYPSI 67
Query: 545 WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 602
S + + +V I + G +D V + + A+L N+
Sbjct: 68 TTPTANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANV 125
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Score = 47.1 bits (110), Expect = 4e-06
Identities = 34/203 (16%), Positives = 61/203 (30%), Gaps = 15/203 (7%)
Query: 373 NYFTERK-WASASDGTQIPICIVYRKNLVKLDGSDPLLLY--GYGSYEICNDPAFNSSRL 429
NY DG ++ +YR DG P+LL Y +++ +++ L
Sbjct: 1 NYSVASNVMVPMRDGVRLA-VDLYRP---DADGPVPVLLVRNPYDKFDVFAWSTQSTNWL 56
Query: 430 SLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCI 489
+ G+ I RG G+F+ + D ++++ +C + +
Sbjct: 57 EFVRDGYAVVIQDTRGLFASE------GEFVPHVDDEADAEDTLSWILEQAWCDG-NVGM 109
Query: 490 EGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT-TMLDPTIPLTTAEWEEWGDPWKEE 548
G S G+ KA ++ D+ P L+ W
Sbjct: 110 FGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGALSVEALLGWSALIGTG 169
Query: 549 FYFYMKSYSPVDNVKAQNYPHIL 571
P D IL
Sbjct: 170 LITSRSDARPEDAADFVQLAAIL 192
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 88 VSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYIT 143
+PD + V + + +VID E G +G G + A + + +
Sbjct: 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHA 64
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (85), Expect = 0.003
Identities = 14/160 (8%), Positives = 36/160 (22%), Gaps = 19/160 (11%)
Query: 472 CAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI 531
+ + + G S G I +L D + A + L ++
Sbjct: 91 VSNITRLVKEKGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVF 150
Query: 532 PLTTAEWE---------------EWGDPWKEEFYFYMKSYSPVDNVKAQNYPH-ILVTAG 575
L + + P + + +
Sbjct: 151 LLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHS 210
Query: 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 615
+D + + ++ L++ + + L H
Sbjct: 211 YSDELLTLRQTNCLISCLQDYQLSFKLYLDD---LGLHND 247
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 648 | |||
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 100.0 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 100.0 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.97 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.97 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.96 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.92 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.92 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.9 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.84 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.84 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.84 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.83 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.83 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.82 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.82 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.81 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.81 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.81 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.81 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.81 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.8 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.77 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.76 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.73 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.73 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.71 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.7 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.7 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.68 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.68 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.67 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.67 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.67 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.66 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.65 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.63 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.63 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.63 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.63 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.62 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.61 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.61 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.6 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.6 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.6 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.6 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.58 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.58 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.58 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.57 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.57 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.56 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.56 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.55 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.55 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.54 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.53 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.53 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.52 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.51 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.49 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.49 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.49 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.47 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.46 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.45 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.43 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.38 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.32 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.32 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.29 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.28 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.25 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.25 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.21 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 99.05 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.03 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 99.02 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.02 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.0 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 98.97 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 98.96 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.93 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.91 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 98.91 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.89 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 98.87 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.84 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.81 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.77 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.76 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.72 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.7 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.69 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 98.66 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.66 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.66 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.66 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.65 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.62 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.62 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.61 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.58 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.56 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.55 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.55 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.53 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.5 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.49 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.48 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.47 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 98.45 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.45 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.44 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.43 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.41 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.38 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.38 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.35 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.31 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.26 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.24 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.22 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.17 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.15 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.12 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.11 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.1 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.1 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.05 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.01 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 97.99 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.98 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.92 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 97.82 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.81 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.74 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.7 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.6 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.6 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.48 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.46 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 97.45 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.42 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 97.4 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 97.4 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.37 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.35 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.35 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.27 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.27 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.25 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 96.89 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.72 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 96.63 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.56 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.44 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.44 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.43 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 96.24 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.07 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 96.0 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.79 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.76 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.56 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 94.9 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 94.32 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.3 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 93.9 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 93.78 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 93.72 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 93.41 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 93.26 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 92.89 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 92.05 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 90.81 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 90.52 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 89.88 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 89.2 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 85.96 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 85.89 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 85.68 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 85.12 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 84.72 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 84.44 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 83.8 |
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=5.5e-36 Score=315.96 Aligned_cols=335 Identities=16% Similarity=0.207 Sum_probs=268.9
Q ss_pred HHHHhhccCCCCCCCCeEeCCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCcE
Q 006375 2 FAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFY 81 (648)
Q Consensus 2 ~~~~~~r~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~ 81 (648)
.+++++++..++.++|.+.|+++||.+..+++.+.+++|+.... +.+|||||+|+++++ +.+
T Consensus 64 ~~~~~~~~~~~~~~~p~~~g~~y~~~~~~~~~~~~~~~~~~~~~-----------------~~~evllD~n~la~~-~~~ 125 (430)
T d1qfma1 64 KERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLE-----------------GEARVFLDPNILSDD-GTV 125 (430)
T ss_dssp HHHHHHHTCSCEECCCEEETTEEEEEEECSSCSSCEEEEESSSS-----------------SCCEEEECGGGGCSS-SCE
T ss_pred HHHHHhhhcCCceeeeEEeCCEEEEEEecCCCccceEEeccccC-----------------CCeeeecchhhhccc-ccc
Confidence 45566666668899999999999999998888888888876542 478999999999884 567
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCc-cceeEEecCC-eEEEEEeCC-----------CC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGV-TASVEWAGNE-ALVYITMDE-----------IL 148 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~-~~~~~WspDg-~l~y~~~~~-----------~~ 148 (648)
.+.++.+||||+++||+.+.+|+|.++|+++|+++|+.+.+.+++. .+.++|++|+ .|+|++.+. ..
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~ 205 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence 7888999999999999999999999999999999999988777765 3679999999 999998653 35
Q ss_pred CCceEEEEECCCCCCCcEEEEeecCC-CeEEEEEeCCCCcEEEEEEcccc--ccEEEEEECCCCC-------ceeEeeec
Q 006375 149 RPDKAWLHKLEADQSNDICLYHEKDD-IYSLGLQASESKKFLFIASESKI--TRFVFYLDVSKPE-------ELRVLTPR 218 (648)
Q Consensus 149 ~~~~l~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~s~Dg~~l~~~~~~~~--~~~l~~~dl~~~~-------~~~~l~~~ 218 (648)
++.+||+|.++++++++.+++++.+. .+..++..|+||+++++.+.... .+.+|++|+.... .+.++..+
T Consensus 206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 285 (430)
T d1qfma1 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN 285 (430)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecc
Confidence 67899999999999999999998764 46677889999999998776543 4689999986543 13344444
Q ss_pred ccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee--EecCCCC-cccceEEEeCCEEEEEEecCCeeEEEEE
Q 006375 219 VVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV--LIPHRES-VKLQDIQLFIDHLAVYEREGGLQKITTY 295 (648)
Q Consensus 219 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~l~v~ 295 (648)
.....+.+.++|+.+|+.+|. ++++++|+.++++.+...+| ++++.+. ..+..+...++++++..++++.++|.++
T Consensus 286 ~~~~~~~~~~~~~~~~~~Tn~-~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~ 364 (430)
T d1qfma1 286 FEGEYDYVTNEGTVFTFKTNR-HSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (430)
T ss_dssp SSSCEEEEEEETTEEEEEECT-TCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred cccceEEEecCCceeecccCc-ccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEE
Confidence 444455578889999999997 68999999999988766666 7876654 4455677788999999999999999999
Q ss_pred EcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE--EEEEEee
Q 006375 296 RLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS--VLKKIET 364 (648)
Q Consensus 296 ~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~--~~~~~~~ 364 (648)
+++ ++.. ..+.+| +.+++.+.+.+++++.++|.++|+++|+++|.||+++++. ++.+..+
T Consensus 365 ~~~--~~~~------~~~~~~-~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~~~~~k~~~ 426 (430)
T d1qfma1 365 DLA--TGAL------LKIFPL-EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVT 426 (430)
T ss_dssp ETT--TCCE------EEEECC-CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECC
T ss_pred ECC--CCcE------EEecCC-CCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcceeeEeccC
Confidence 987 3432 234433 3456666777788899999999999999999999999864 3444433
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=1.4e-32 Score=269.80 Aligned_cols=248 Identities=20% Similarity=0.235 Sum_probs=203.6
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChh
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 452 (648)
...++.++++|.||.+|++++++|++. .++.|+||++|||++.+....|......|+++||+|+.+|+||++++|..
T Consensus 9 ~~~~~~v~~~s~dG~~i~~~l~~p~~~---~~~~Pviv~~HGG~~~~~~~~~~~~~~~la~~G~~v~~~d~r~~~~~g~~ 85 (260)
T d2hu7a2 9 IAGSRLVWVESFDGSRVPTYVLESGRA---PTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEE 85 (260)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEETTS---CSSEEEEEEECSSSSCCCCSSCCHHHHHHHHHTCEEEEECCTTCSSSCHH
T ss_pred cCceEEEEEECCCCCEEEEEEEeCCCC---CCCceEEEEECCCCccCCCccccHHHHHHHhhccccccceeeeccccccc
Confidence 346788999999999999999998764 46789999999988877777888888999999999999999999999999
Q ss_pred hhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCC
Q 006375 453 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 532 (648)
Q Consensus 453 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~ 532 (648)
|............++|+.++++|+.+++ ++.+++|+|+|+||++++.++..+|+.++++++.+|+.|+...... ..
T Consensus 86 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~-~~- 161 (260)
T d2hu7a2 86 WRLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYEL-SD- 161 (260)
T ss_dssp HHHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHT-CC-
T ss_pred cccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhhhcc-cc-
Confidence 9988877777778999999999999875 6789999999999999999999999999999999999987654321 11
Q ss_pred CCcccccccC---CCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecC
Q 006375 533 LTTAEWEEWG---DPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCEL 609 (648)
Q Consensus 533 ~~~~~~~~~g---~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 609 (648)
..+..+. ..... +.+...+|+.+++++++| +||+||++|..||+.++.+++++|++.+++.++++++
T Consensus 162 ---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~P-~liihG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~--- 231 (260)
T d2hu7a2 162 ---AAFRNFIEQLTGGSR---EIMRSRSPINHVDRIKEP-LALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIP--- 231 (260)
T ss_dssp ---HHHHHHHHHHHCSCH---HHHHHTCGGGCGGGCCSC-EEEEEETTCSSSCSHHHHHHHHHHHHTTCCEEEEEET---
T ss_pred ---ccccccccccccccc---ccccccchhhcccccCCC-ceeeecccCceecHHHHHHHHHHHHHCCCCeEEEEEC---
Confidence 1111110 01222 345788999999999998 9999999999999999999999999999998888886
Q ss_pred CCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 610 GAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 610 ~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
+++|.... .....+.+....+||.+||.
T Consensus 232 g~~H~~~~-~e~~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 232 DAGHAINT-MEDAVKILLPAVFFLATQRE 259 (260)
T ss_dssp TCCSSCCB-HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCC-hHhHHHHHHHHHHHHHHHhc
Confidence 88996543 22333334467899999974
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=1.8e-30 Score=257.12 Aligned_cols=267 Identities=35% Similarity=0.570 Sum_probs=210.3
Q ss_pred CCCCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHH-HHHHCCCEEEEEccCCCCC
Q 006375 370 DTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRL-SLLDRGFIFAIAQIRGGGE 448 (648)
Q Consensus 370 ~~~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~-~l~~~G~~v~~~~~rG~g~ 448 (648)
|+++|++|++++++.||.+|+++|++|++. +.++++|+||++|||++.+..+.+..... .++.+|++++..++++...
T Consensus 1 ~~~~y~~e~v~~~s~DG~~i~~~l~~P~~~-~~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (280)
T d1qfma2 1 DASDYQTVQIFYPSKDGTKIPMFIVHKKGI-KLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGE 79 (280)
T ss_dssp CGGGEEEEEEEEECTTSCEEEEEEEEETTC-CCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSST
T ss_pred CcccCEEEEEEEECCCCCEEEEEEEEcCCC-CCCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeeccccccccc
Confidence 356788999999999999999999999987 77889999999999999888877766554 5556788888898888888
Q ss_pred CChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccC
Q 006375 449 LGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD 528 (648)
Q Consensus 449 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~ 528 (648)
++..+.............++...++.+...+...+..+++++|+|.||.++.+++...+++++++++.+++.|+......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (280)
T d1qfma2 80 YGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKY 159 (280)
T ss_dssp THHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGS
T ss_pred cchhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhccc
Confidence 87777766666666667788888888888888899999999999999999999999999999999999999998765432
Q ss_pred CCCCCCcccccccCCCCCHHHHHHHHcCCccccCCC-----CCCCeEEEeecCCCCccCCchHHHHHHHHHhc-------
Q 006375 529 PTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKA-----QNYPHILVTAGLNDPRVMYSEPAKFVAKLREM------- 596 (648)
Q Consensus 529 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~-----~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~------- 596 (648)
...+. ..........+.........+|+.++.. ...||+||+||++|++||+.|+++++++|++.
T Consensus 160 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~~~~~ 236 (280)
T d1qfma2 160 TIGHA---WTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQ 236 (280)
T ss_dssp TTGGG---GHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTC
T ss_pred ccccc---ceecccCCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhhhhcC
Confidence 21111 1112222233344444455566555443 25677999999999999999999999999765
Q ss_pred CCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCCCCCC
Q 006375 597 KTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSMLPSV 643 (648)
Q Consensus 597 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 643 (648)
++++++++++ ++||++.....+.++..+++++||.++|+..+.|
T Consensus 237 ~~~~~l~~~~---~~gHgf~~~~~~~~~~~~~~~~fl~k~L~~~~~~ 280 (280)
T d1qfma2 237 NNPLLIHVDT---KAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 280 (280)
T ss_dssp CSCEEEEEES---SCCSSTTCCHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCcEEEEEeC---cCCCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4555566665 8999877776777788888999999999998765
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=1.4e-30 Score=255.14 Aligned_cols=253 Identities=17% Similarity=0.135 Sum_probs=199.4
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCC-C--CCCchhHHHHHHCCCEEEEEccCCCCCCCh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN-D--PAFNSSRLSLLDRGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~-~--~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~ 451 (648)
..|++.+...+|+++.++|+.|++. ++++++|+||++|||++... . ..+......++++||+|+.+|+||++++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~lP~~~-~~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~~~~ 80 (258)
T d2bgra2 2 PSKKLDFIILNETKFWYQMILPPHF-DKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGD 80 (258)
T ss_dssp CEEEEEEEEETTEEEEEEEEECTTC-CTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCH
T ss_pred CceeEEEEEeCCcEEEEEEEECCCc-CCCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCCcch
Confidence 3678889999999999999999998 77788999999999744422 2 223334456788999999999999999999
Q ss_pred hhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCC
Q 006375 452 QWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI 531 (648)
Q Consensus 452 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~ 531 (648)
.|............+.|+.++++++.++..+|+++|+++|+|+||.++++++..+|++++++++.++.........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 156 (258)
T d2bgra2 81 KIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDS---- 156 (258)
T ss_dssp HHHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBH----
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeecccccccccc----
Confidence 9998877777777889999999999999999999999999999999999999999999999998887655332110
Q ss_pred CCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCC
Q 006375 532 PLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGA 611 (648)
Q Consensus 532 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 611 (648)
.......+.+......+.+..++|+..+.+++.+|+|++||++|++||+.++.+++++|+++++++++++++ ++
T Consensus 157 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~g~~~~~~~~~---g~ 230 (258)
T d2bgra2 157 ---VYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYT---DE 230 (258)
T ss_dssp ---HHHHHHHCCCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEET---TC
T ss_pred ---cccchhcccccchhhHHHhhcccccccccccccCChheeeecCCCcccHHHHHHHHHHHHHCCCCEEEEEEC---CC
Confidence 000122234332233344577899988888754459999999999999999999999999999999888887 88
Q ss_pred CccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 612 GHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 612 gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
+|+..... ...+....+.+||.++|.+
T Consensus 231 ~H~~~~~~-~~~~~~~~i~~fl~~~l~~ 257 (258)
T d2bgra2 231 DHGIASST-AHQHIYTHMSHFIKQCFSL 257 (258)
T ss_dssp CTTCCSHH-HHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCc-cHHHHHHHHHHHHHHHhcC
Confidence 99654322 2223344678999999986
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-30 Score=255.84 Aligned_cols=241 Identities=15% Similarity=0.209 Sum_probs=183.1
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCC-CCCCc--hhHHHHHHCCCEEEEEccCCCCCCChhhhhccccc
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICN-DPAFN--SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFL 460 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~-~~~~~--~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~ 460 (648)
.||.+|+++++.|++. +.++++|+||++|||++... ...|. ...+.|+++||+|+++|+||++++|.+|.......
T Consensus 10 ~dg~~l~~~l~~P~~~-~~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~~~ 88 (258)
T d1xfda2 10 IDDYNLPMQILKPATF-TDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRR 88 (258)
T ss_dssp ETTEEECCBEEBCSSC-CSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTC
T ss_pred eCCeEEEEEEEECCCc-CCCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhhcc
Confidence 4999999999999987 77788999999999865432 33343 33567899999999999999999999998877766
Q ss_pred CCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC----ceeEEEecCCcccccccccCCCCCCCcc
Q 006375 461 KKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVDVLTTMLDPTIPLTTA 536 (648)
Q Consensus 461 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~~~a~v~~~~~~d~~~~~~~~~~~~~~~ 536 (648)
.+...++|+.++++||.++..+|++||+++|+|+||++++.++...++ .+++.+...|+....... ...
T Consensus 89 ~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 161 (258)
T d1xfda2 89 LGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYA-------SAF 161 (258)
T ss_dssp TTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSB-------HHH
T ss_pred chhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeeccc-------ccc
Confidence 667789999999999999999999999999999999999988877654 567777777654432110 000
Q ss_pred cccccCCC-CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccC
Q 006375 537 EWEEWGDP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 615 (648)
Q Consensus 537 ~~~~~g~~-~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~ 615 (648)
.....+.+ .+++. +...++..++.+...+|+||+||+.|.+||+.++.+++++|++.+++.++++++ +++|..
T Consensus 162 ~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~~~~~~~~~~p---~~~H~~ 235 (258)
T d1xfda2 162 SERYLGLHGLDNRA---YEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYP---DESHYF 235 (258)
T ss_dssp HHHHHCCCSSCCSS---TTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEET---TCCSSC
T ss_pred ccccccccccchHH---hhccchhhhhhhhhcccccccccCCCCCcCHHHHHHHHHHHHHCCCCEEEEEEC---CCCCCC
Confidence 11112322 12222 245577777777644569999999999999999999999999999999888886 889965
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCC
Q 006375 616 KSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 616 ~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
.... ...+....+++||.++|++
T Consensus 236 ~~~~-~~~~~~~~~~~f~~~~~~~ 258 (258)
T d1xfda2 236 TSSS-LKQHLYRSIINFFVECFRI 258 (258)
T ss_dssp CCHH-HHHHHHHHHHHHHTTTTCC
T ss_pred CCCc-CHHHHHHHHHHHHHHhhCC
Confidence 4322 2222334678999999875
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=8.4e-25 Score=220.85 Aligned_cols=249 Identities=18% Similarity=0.104 Sum_probs=177.3
Q ss_pred CCCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCC
Q 006375 371 TNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELG 450 (648)
Q Consensus 371 ~~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g 450 (648)
...+..+.+++++.||.+|+++++.|++. +++.|+||++||+.+... +......|+++||+|+++|+||.|..+
T Consensus 50 ~~~~~~~~v~~~s~dG~~l~~~l~~P~~~---~~~~P~Vv~~hG~~~~~~---~~~~~~~~a~~G~~v~~~D~rG~G~s~ 123 (322)
T d1vlqa_ 50 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE---EEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGW 123 (322)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS---CSSEEEEEECCCTTCCCC---CGGGGCHHHHTTCEEEEECCTTCCCSS
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEeccCC---CCCccEEEEecCCCCCcC---cHHHHHHHHhCCCEEEEeeccccCCCC
Confidence 34567889999999999999999999764 467899999999655432 233456789999999999999999776
Q ss_pred hhhhhcccccCC---------------------CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCc
Q 006375 451 RQWYENGKFLKK---------------------KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL 509 (648)
Q Consensus 451 ~~~~~~~~~~~~---------------------~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~ 509 (648)
............ ...+.|+.++++++..+..+|++||+++|+|+||.+++.++...| .
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~-~ 202 (322)
T d1vlqa_ 124 LKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-K 202 (322)
T ss_dssp SCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-S
T ss_pred CCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCC-C
Confidence 543222111100 013579999999999999999999999999999999999888876 5
Q ss_pred eeEEEecCCcccccccccCCCCCCCccccccc--CCC-CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchH
Q 006375 510 FKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW--GDP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEP 586 (648)
Q Consensus 510 ~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~--g~~-~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~ 586 (648)
++++|+.+|..+...................+ ..+ ..+...+.+..++|..++.++++| +||+||++|.+||+.++
T Consensus 203 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~i~~P-~Lv~~G~~D~~vp~~~~ 281 (322)
T d1vlqa_ 203 AKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIP-ALFSVGLMDNICPPSTV 281 (322)
T ss_dssp CCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSC-EEEEEETTCSSSCHHHH
T ss_pred ccEEEEeCCccccHHHHHhhccccchhhHHhhhhcCcchhhhHHHHhhhhhHHHHHhcCCCC-EEEEEeCCCCCcCHHHH
Confidence 88888888866543322110100001111111 122 234445566778999999999998 99999999999999988
Q ss_pred HHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 587 AKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 587 ~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
.++++++ +.++++++++ +++|... .....+ ..++||.+.|.
T Consensus 282 ~~~~~~~---~~~~~l~~~p---~~~H~~~--~~~~~~---~~~~~l~~~l~ 322 (322)
T d1vlqa_ 282 FAAYNYY---AGPKEIRIYP---YNNHEGG--GSFQAV---EQVKFLKKLFE 322 (322)
T ss_dssp HHHHHHC---CSSEEEEEET---TCCTTTT--HHHHHH---HHHHHHHHHHC
T ss_pred HHHHHHC---CCCeEEEEEC---CCCCCCc--cccCHH---HHHHHHHHHhC
Confidence 8777665 4566777776 7899543 222112 34789998873
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=1.3e-24 Score=218.72 Aligned_cols=250 Identities=15% Similarity=0.128 Sum_probs=178.5
Q ss_pred CCCCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCC
Q 006375 370 DTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGEL 449 (648)
Q Consensus 370 ~~~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~ 449 (648)
..+.+.++++++++.||.+|+++++.|++. ++.|+||++||+.+... .+...+..|+++||+|+++|+||+|++
T Consensus 50 ~~~~~~~~~v~~~~~dg~~i~~~l~~P~~~----~~~P~vv~~HG~~~~~~--~~~~~~~~la~~Gy~vi~~D~rG~G~s 123 (318)
T d1l7aa_ 50 PADGVKVYRLTYKSFGNARITGWYAVPDKE----GPHPAIVKYHGYNASYD--GEIHEMVNWALHGYATFGMLVRGQQRS 123 (318)
T ss_dssp SCSSEEEEEEEEEEGGGEEEEEEEEEESSC----SCEEEEEEECCTTCCSG--GGHHHHHHHHHTTCEEEEECCTTTSSS
T ss_pred CCCCeEEEEEEEECCCCcEEEEEEEecCCC----CCceEEEEecCCCCCcc--chHHHHHHHHHCCCEEEEEeeCCCCCC
Confidence 345677899999999999999999999764 67899999999765443 356667889999999999999999987
Q ss_pred ChhhhhcccccCC--------------CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEe
Q 006375 450 GRQWYENGKFLKK--------------KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVA 515 (648)
Q Consensus 450 g~~~~~~~~~~~~--------------~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~ 515 (648)
+..+......... ...+.|...+++++..++.+|+.+|+++|+|+||.+++.++...++ ++++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~-~~~~~~ 202 (318)
T d1l7aa_ 124 EDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVA 202 (318)
T ss_dssp CCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEE
T ss_pred CCCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCcc-cceEEE
Confidence 6554322111110 1235788999999999999999999999999999999999998875 667777
Q ss_pred cCCcccccccccCC--CCCCCcc-cc-cccCCC-CCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHH
Q 006375 516 AVPFVDVLTTMLDP--TIPLTTA-EW-EEWGDP-WKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFV 590 (648)
Q Consensus 516 ~~~~~d~~~~~~~~--~~~~~~~-~~-~~~g~~-~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~ 590 (648)
.+|........... ..+.... .+ ...+.. ...+.+.....+++...++++++| +||+||++|..||+.++.+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~Lii~G~~D~~vp~~~~~~~~ 281 (318)
T d1l7aa_ 203 DYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVP-VLMSIGLIDKVTPPSTVFAAY 281 (318)
T ss_dssp ESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSC-EEEEEETTCSSSCHHHHHHHH
T ss_pred eccccccHHHHhhcccccccchhhhhhhccccccccccccccccccccccccccCCCC-EEEEEECCCCCcCHHHHHHHH
Confidence 77655433322110 1111110 00 111222 122333445566778888888998 999999999999999999998
Q ss_pred HHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 591 AKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 591 ~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
+++. .++++++++ ++||... .+ ..+ .+++||.++|+.
T Consensus 282 ~~l~---~~~~l~~~~---~~gH~~~---~~-~~~--~~~~fl~~~LkG 318 (318)
T d1l7aa_ 282 NHLE---TKKELKVYR---YFGHEYI---PA-FQT--EKLAFFKQILKG 318 (318)
T ss_dssp HHCC---SSEEEEEET---TCCSSCC---HH-HHH--HHHHHHHHHHCC
T ss_pred HHcC---CCcEEEEEC---CCCCCCc---HH-HHH--HHHHHHHHhCCC
Confidence 8774 355666665 8899643 22 222 467999999863
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.90 E-value=2e-23 Score=213.25 Aligned_cols=241 Identities=19% Similarity=0.128 Sum_probs=166.6
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChh
Q 006375 373 NYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 452 (648)
....+++.++. +|.+|+++++.|++. ++.|+||++||..+.. ..+......|+++||+|+.+|+||+|+....
T Consensus 103 ~~~~e~v~ip~-dg~~l~g~l~~P~~~----~~~P~Vi~~hG~~~~~--e~~~~~~~~l~~~G~~vl~~D~~G~G~s~~~ 175 (360)
T d2jbwa1 103 SPPAERHELVV-DGIPMPVYVRIPEGP----GPHPAVIMLGGLESTK--EESFQMENLVLDRGMATATFDGPGQGEMFEY 175 (360)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEECCSSS----CCEEEEEEECCSSCCT--TTTHHHHHHHHHTTCEEEEECCTTSGGGTTT
T ss_pred CCCeEEeecCc-CCcccceEEEecCCC----CCceEEEEeCCCCccH--HHHHHHHHHHHhcCCEEEEEccccccccCcc
Confidence 34578888884 788999998887653 6789999999954432 2344556789999999999999998865332
Q ss_pred hhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCC
Q 006375 453 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 532 (648)
Q Consensus 453 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~ 532 (648)
.. .......++.++++||.....+|++||+++|+||||++++.++..+| +++++|+..|+.|+..... ..+
T Consensus 176 ~~------~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~~~~~~~~~--~~~ 246 (360)
T d2jbwa1 176 KR------IAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGFSDLDYWDL--ETP 246 (360)
T ss_dssp CC------SCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCSCSTTGGG--SCH
T ss_pred cc------ccccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEcccccHHHHhh--hhh
Confidence 11 11123346678899999999999999999999999999999999888 5899999999887643221 111
Q ss_pred CCccccc-ccCCCCCHHH-HHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCC
Q 006375 533 LTTAEWE-EWGDPWKEEF-YFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 610 (648)
Q Consensus 533 ~~~~~~~-~~g~~~~~~~-~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 610 (648)
.....+. ..+.+...+. ......++....+.++++| +||+||++|. ||+.++.++++++.... .+++++ ++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-~Lii~G~~D~-vp~~~~~~l~~~~~~~~--~~l~~~---~~ 319 (360)
T d2jbwa1 247 LTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACP-TYILHGVHDE-VPLSFVDTVLELVPAEH--LNLVVE---KD 319 (360)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSC-EEEEEETTSS-SCTHHHHHHHHHSCGGG--EEEEEE---TT
T ss_pred hhhHHHHHhccCCchHHHHHHHHhhcchhhhHhhCCCC-EEEEEeCCCC-cCHHHHHHHHHhcCCCC--eEEEEE---CC
Confidence 1111111 1122222222 2233456666677888998 9999999997 79999999998876432 223333 37
Q ss_pred CCccCCCchHHHHHHHHHHHHHHHHhcCC
Q 006375 611 AGHFSKSGRFERLREAAFTYTFLMRALSM 639 (648)
Q Consensus 611 ~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 639 (648)
++|........ . ...+.+||.++|..
T Consensus 320 g~H~~~~~~~~-~--~~~i~dWl~~~L~~ 345 (360)
T d2jbwa1 320 GDHCCHNLGIR-P--RLEMADWLYDVLVA 345 (360)
T ss_dssp CCGGGGGGTTH-H--HHHHHHHHHHHHTS
T ss_pred CCcCCCcChHH-H--HHHHHHHHHHHhcc
Confidence 78954322222 2 23567899999954
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.84 E-value=1.7e-20 Score=182.36 Aligned_cols=191 Identities=17% Similarity=0.155 Sum_probs=141.3
Q ss_pred eEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHH
Q 006375 390 PICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDF 469 (648)
Q Consensus 390 ~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~ 469 (648)
.+.+++|++. .+++.|+||++||+.+... .+...+..|+++||+|+++|++|.++....+ ..|+
T Consensus 38 ~~~ly~P~~~--~~g~~P~Vv~~HG~~g~~~--~~~~~a~~lA~~Gy~V~~~d~~~~~~~~~~~------------~~d~ 101 (260)
T d1jfra_ 38 GGTIYYPTST--ADGTFGAVVISPGFTAYQS--SIAWLGPRLASQGFVVFTIDTNTTLDQPDSR------------GRQL 101 (260)
T ss_dssp CEEEEEESCC--TTCCEEEEEEECCTTCCGG--GTTTHHHHHHTTTCEEEEECCSSTTCCHHHH------------HHHH
T ss_pred CEEEEEcCCC--CCCCccEEEEECCCCCCHH--HHHHHHHHHHhCCCEEEEEeeCCCcCCchhh------------HHHH
Confidence 4677888763 3567899999999765433 3556678999999999999999876654332 3688
Q ss_pred HHHHHHHHHc----CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCC
Q 006375 470 IACAEYLIKN----CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPW 545 (648)
Q Consensus 470 ~~~~~~l~~~----~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~ 545 (648)
.++++++.+. +.+|++||+++|+|+||.+++.++...+ .++|+|+.+|....
T Consensus 102 ~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~~~~~----------------------- 157 (260)
T d1jfra_ 102 LSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTGWNTD----------------------- 157 (260)
T ss_dssp HHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCCSC-----------------------
T ss_pred HHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeeccccc-----------------------
Confidence 8999999875 5689999999999999999999999876 58888887774221
Q ss_pred CHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHH
Q 006375 546 KEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLRE 625 (648)
Q Consensus 546 ~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~ 625 (648)
....++++| +|++||++|..||+.+..+.+.+...++.+.+++.++ +++|+...........
T Consensus 158 --------------~~~~~~~~P-~l~i~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~i~---ga~H~~~~~~~~~~~~ 219 (260)
T d1jfra_ 158 --------------KTWPELRTP-TLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELR---GASHFTPNTSDTTIAK 219 (260)
T ss_dssp --------------CCCTTCCSC-EEEEEETTCSSSCTTTTHHHHHHHSCTTSCEEEEEET---TCCTTGGGSCCHHHHH
T ss_pred --------------ccccccccc-eeEEecCCCCCCCHHHHHHHHHHhcccCCCEEEEEEC---CCccCCCCCChHHHHH
Confidence 012334677 9999999999999987666555555556666666554 8999764333332333
Q ss_pred HHHHHHHHHHhcCCC
Q 006375 626 AAFTYTFLMRALSML 640 (648)
Q Consensus 626 ~~~~~~fl~~~l~~~ 640 (648)
.+++||.++|...
T Consensus 220 --~~~~wl~~~L~~d 232 (260)
T d1jfra_ 220 --YSISWLKRFIDSD 232 (260)
T ss_dssp --HHHHHHHHHHSCC
T ss_pred --HHHHHHHHHhcCc
Confidence 4689999998743
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.84 E-value=1.3e-20 Score=192.14 Aligned_cols=251 Identities=17% Similarity=0.163 Sum_probs=161.5
Q ss_pred CCCCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC---CCchhHHHHHHCCCEEEEEccCCC
Q 006375 370 DTNNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP---AFNSSRLSLLDRGFIFAIAQIRGG 446 (648)
Q Consensus 370 ~~~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~---~~~~~~~~l~~~G~~v~~~~~rG~ 446 (648)
+++.+..+...+++.||..|++.++.|++. +++.|+|||+|||....... .+...++.++++|++|+.+|||.+
T Consensus 73 ~~~~v~~~~~~i~~~dg~~i~~~iy~P~~~---~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla 149 (358)
T d1jkma_ 73 DRDDVETSTETILGVDGNEITLHVFRPAGV---EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNA 149 (358)
T ss_dssp CCCCEEEEEEEEECTTSCEEEEEEEEETTC---CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCCCccEEEEEEeCCCCCEEEEEEEecCCC---CCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeeccc
Confidence 345567788899999999999999998764 46789999999985543332 233456788899999999999987
Q ss_pred CCCChhhhhcccccCCCCcHhHHHHHHHHHHHcC-CCCCCeEEEEeeChhHHHHHHHHhh-----CCCceeEEEecCCcc
Q 006375 447 GELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC-YCTKEKLCIEGRSAGGLLIGAVLNM-----RPDLFKAAVAAVPFV 520 (648)
Q Consensus 447 g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~-----~p~~~~a~v~~~~~~ 520 (648)
++...+ ......++|+.++++|+.++. ..|++||+|+|.|+||+|++.++.. .+..+.+.++.+|++
T Consensus 150 ~~~~pe-------~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~ 222 (358)
T d1jkma_ 150 WTAEGH-------HPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYI 222 (358)
T ss_dssp EETTEE-------CCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCC
T ss_pred cccccc-------CCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCcccccccccccee
Confidence 543211 122356899999999998763 3578999999999999998776643 234578899999987
Q ss_pred cccccccCCCCCCCc-ccc-cccCCCCCHHHH-HHHHcC--------Ccccc---C---CCCCCCeEEEeecCCCCccCC
Q 006375 521 DVLTTMLDPTIPLTT-AEW-EEWGDPWKEEFY-FYMKSY--------SPVDN---V---KAQNYPHILVTAGLNDPRVMY 583 (648)
Q Consensus 521 d~~~~~~~~~~~~~~-~~~-~~~g~~~~~~~~-~~~~~~--------sp~~~---~---~~~~~P~~li~~g~~D~~v~~ 583 (648)
+....... ...... ..+ ...+........ .++..| +|... . ....+||+||++|++|..+
T Consensus 223 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l~-- 299 (358)
T d1jkma_ 223 SGGYAWDH-ERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLR-- 299 (358)
T ss_dssp CCCTTSCH-HHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTTH--
T ss_pred ccccCccc-hhhcccccchhcccccccchhhhhhHHhhcCCccCCccCccccccccchhhccCCCCEEEEECCCCCCH--
Confidence 75321100 000000 000 000000011110 011111 11111 0 0125788999999999654
Q ss_pred chHHHHHHHHHhcCCCCCeEEEEecCCCCccC----CCchHHHHHH-HHHHHHHHHHh
Q 006375 584 SEPAKFVAKLREMKTDDNILLFKCELGAGHFS----KSGRFERLRE-AAFTYTFLMRA 636 (648)
Q Consensus 584 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~----~~~~~~~~~~-~~~~~~fl~~~ 636 (648)
.++++|+++|+++|+++++++++ +.+|++ .....+..++ +.++..|+..+
T Consensus 300 ~e~~~~~~~L~~aGv~v~~~~~~---g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~ 354 (358)
T d1jkma_ 300 DEGIAFARRLARAGVDVAARVNI---GLVHGADVIFRHWLPAALESTVRDVAGFAADR 354 (358)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEET---TCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcEEEEEEC---CCccchhhhccccCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999998877776 888953 1111233333 33566788765
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.84 E-value=7.7e-20 Score=183.57 Aligned_cols=247 Identities=20% Similarity=0.183 Sum_probs=156.5
Q ss_pred CCCCcceEEEEEeCCCCe-EEeEEEEEeeCccccCCCCcEEEEecCCCCCCCC-CCCchhHHHHHH-CCCEEEEEccCCC
Q 006375 370 DTNNYFTERKWASASDGT-QIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLD-RGFIFAIAQIRGG 446 (648)
Q Consensus 370 ~~~~~~~~~~~~~s~~g~-~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~-~G~~v~~~~~rG~ 446 (648)
....+..+++.+++.+|. +|+++++.|++. +++.|+||++|||...... ..+......++. .||+|+.+|||+.
T Consensus 44 ~~~~v~~~~~~~~~~~g~~~i~~~~~~P~~~---~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~ 120 (317)
T d1lzla_ 44 SFDGVSLRELSAPGLDGDPEVKIRFVTPDNT---AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLA 120 (317)
T ss_dssp CCTTEEEEEEEECCSTTCCCEEEEEEEESSC---CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCT
T ss_pred CCCCceEEEEEEecCCCCceEEEEEECCCCC---CCCCcEEEEecCcccccccccccchHHHhHHhhcCCcccccccccc
Confidence 345567788999999985 699999999764 4678999999998544333 234444556665 4999999999987
Q ss_pred CCCChhhhhcccccCCCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhCCC----ceeEEEecCCc
Q 006375 447 GELGRQWYENGKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPF 519 (648)
Q Consensus 447 g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~~~a~v~~~~~ 519 (648)
.+... ...++|+.++++|+.++ ..+|++||+++|+|+||++++.++.+.++ .....++..+.
T Consensus 121 pe~~~-----------~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~~ 189 (317)
T d1lzla_ 121 PETTF-----------PGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPE 189 (317)
T ss_dssp TTSCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCC
T ss_pred ccccc-----------cccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhccccccccccccccc
Confidence 76421 23468999999998765 34799999999999999999888765322 12334444333
Q ss_pred ccccccc----cCCCCCCCcc---c--c-----cccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCch
Q 006375 520 VDVLTTM----LDPTIPLTTA---E--W-----EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSE 585 (648)
Q Consensus 520 ~d~~~~~----~~~~~~~~~~---~--~-----~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~ 585 (648)
.+..... .....+.... . + .....+.++... ...+|.........||+||+||++|.. ..+
T Consensus 190 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pp~li~~g~~D~l--~~~ 264 (317)
T d1lzla_ 190 LDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVS---IYAAPSRATDLTGLPPTYLSTMELDPL--RDE 264 (317)
T ss_dssp CCTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCC---TTTCGGGCSCCTTCCCEEEEEETTCTT--HHH
T ss_pred ccccccccccccccccchhhhhhhHHHHhhhccccccCCCCchhc---cccCchhhhhccCCCCeEEEECCCCCC--HHH
Confidence 2211100 0000000000 0 0 000000111000 011233222233567799999999954 569
Q ss_pred HHHHHHHHHhcCCCCCeEEEEecCCCCccCC--CchHHHHHHHHHHHHHHHHhcC
Q 006375 586 PAKFVAKLREMKTDDNILLFKCELGAGHFSK--SGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 586 ~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~--~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
+++|+++|+++|+++++++++ +++|++. .......+...+.++||.++|.
T Consensus 265 ~~~~~~~L~~~G~~v~~~~~~---g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 265 GIEYALRLLQAGVSVELHSFP---GTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp HHHHHHHHHHTTCCEEEEEET---TCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCCEEEEEEC---cCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 999999999999998877776 8889542 1222333345567999999885
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.83 E-value=4e-20 Score=188.24 Aligned_cols=247 Identities=16% Similarity=0.184 Sum_probs=169.8
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCC--CCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYE--ICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 453 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~--~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~ 453 (648)
.+.+.++..||++|.+.++.|++. ++.|+||+.||..+ ......+...++.|+++||+|+++|+||.|+++..+
T Consensus 5 ~~~v~ipmrDGv~L~~~vy~P~~~----~~~P~il~~~pyg~~~~~~~~~~~~~~~~~a~~GY~vv~~d~RG~g~S~G~~ 80 (347)
T d1ju3a2 5 ASNVMVPMRDGVRLAVDLYRPDAD----GPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEF 80 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEEECCS----SCEEEEEEEESSCTTCCHHHHTTSCCTHHHHHTTCEEEEEECTTSTTCCSCC
T ss_pred EeCeEEECCCCCEEEEEEEEcCCC----CCEEEEEEEcCCCCccccCcCcccHHHHHHHHCCCEEEEEeeCCccccCCcc
Confidence 467899999999999999999753 68999999997221 212223445578899999999999999999887765
Q ss_pred hhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc-CCCCC
Q 006375 454 YENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML-DPTIP 532 (648)
Q Consensus 454 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~-~~~~~ 532 (648)
. ...+...|..++++|+.++.+.| .||+++|.|+||+++.++|+..|..++|+|..++..|+..... ...-.
T Consensus 81 ~------~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~gg~ 153 (347)
T d1ju3a2 81 V------PHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGA 153 (347)
T ss_dssp C------TTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTCC
T ss_pred c------cccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhcCCc
Confidence 3 22345579999999999999887 6999999999999999999988889999999999998754211 00000
Q ss_pred CCcc---ccc-----------------------------------ccCCC-------------------CCHHHHHHHHc
Q 006375 533 LTTA---EWE-----------------------------------EWGDP-------------------WKEEFYFYMKS 555 (648)
Q Consensus 533 ~~~~---~~~-----------------------------------~~g~~-------------------~~~~~~~~~~~ 555 (648)
+... .|. ....+ ..+..-.++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 233 (347)
T d1ju3a2 154 LSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDESWQS 233 (347)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCSCCHHHHT
T ss_pred cchhhHHHHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcccchhhhhc
Confidence 0000 000 00000 00011124456
Q ss_pred CCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCc-----------hHHHHH
Q 006375 556 YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG-----------RFERLR 624 (648)
Q Consensus 556 ~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~-----------~~~~~~ 624 (648)
.+|..++.++++| +|+++|..|..++ .+.+.+++++. +.+.++++-+. +|..... .....+
T Consensus 234 ~~~~~~~~~i~vP-~L~i~G~~D~~~~--~~~~~~~~~~~-~~~~~liigpw----~H~~~~~~~~~~~~g~~~~~~~~~ 305 (347)
T d1ju3a2 234 ISLFERLGGLATP-ALITAGWYDGFVG--ESLRTFVAVKD-NADARLVVGPW----SHSNLTGRNADRKFGIAATYPIQE 305 (347)
T ss_dssp TCCHHHHTTCCCC-EEEEEEEECTTHH--HHHHHHHHHTT-TSCEEEEEEEE----ESSCCSSEETTEECCGGGSCCHHH
T ss_pred CCHHHHhhcCCCC-EEEeccccCCCcc--hhHHHHHHhhc-cCCceEEEcCc----cccCcccccCCCCCCccccccHHH
Confidence 6788888999999 9999999998654 56778888875 34555555542 3422110 001122
Q ss_pred HHHHHHHHHHHhcCCCC
Q 006375 625 EAAFTYTFLMRALSMLP 641 (648)
Q Consensus 625 ~~~~~~~fl~~~l~~~~ 641 (648)
.....++||.++|+...
T Consensus 306 ~~~~~l~wfD~~LKg~~ 322 (347)
T d1ju3a2 306 ATTMHKAFFDRHLRGET 322 (347)
T ss_dssp HHHHHHHHHHHHTSCCT
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 23356899999997543
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.83 E-value=1.1e-19 Score=169.69 Aligned_cols=207 Identities=13% Similarity=0.060 Sum_probs=145.7
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecC--CCCCCCCCC-CchhHHHHHHCCCEEEEEccCCCCCCChh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYG--SYEICNDPA-FNSSRLSLLDRGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hG--g~~~~~~~~-~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 452 (648)
.+.+.+...+| +|.+.+..|+.. ...+.+++|++|+ ++|.++... ....+..|+++||.|+.+|+||.|+....
T Consensus 8 ~~~l~i~gp~G-~l~~~~~~p~~~--~~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G~S~g~ 84 (218)
T d2fuka1 8 SAALTLDGPVG-PLDVAVDLPEPD--VAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS 84 (218)
T ss_dssp CEEEEEEETTE-EEEEEEECCCTT--SCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSC
T ss_pred ceEEEEeCCCc-cEEEEEEcCCCC--CCCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCccCCCc
Confidence 46678888888 588887777553 2344567777774 334333322 23445788999999999999998876544
Q ss_pred hhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCC
Q 006375 453 WYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIP 532 (648)
Q Consensus 453 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~ 532 (648)
+. ......+|+.++++|+.++. +..+++++|+||||.+++.++.+. ..+++|+.+|..+...+
T Consensus 85 ~~------~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~~~------- 147 (218)
T d2fuka1 85 FD------HGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWDF------- 147 (218)
T ss_dssp CC------TTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBCC-------
T ss_pred cC------cCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccchhh-------
Confidence 32 22345789999999999874 457999999999999998888764 36788988886543211
Q ss_pred CCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCC
Q 006375 533 LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAG 612 (648)
Q Consensus 533 ~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g 612 (648)
.+ .+..+| +|++||++|..||+.++.++++++. .+.++++++ +++
T Consensus 148 ------------------------~~----~~~~~P-~Lvi~G~~D~~vp~~~~~~l~~~~~---~~~~l~~i~---ga~ 192 (218)
T d2fuka1 148 ------------------------SD----VQPPAQ-WLVIQGDADEIVDPQAVYDWLETLE---QQPTLVRMP---DTS 192 (218)
T ss_dssp ------------------------TT----CCCCSS-EEEEEETTCSSSCHHHHHHHHTTCS---SCCEEEEET---TCC
T ss_pred ------------------------hc----cccccc-eeeEecCCCcCcCHHHHHHHHHHcc---CCceEEEeC---CCC
Confidence 00 022456 9999999999999999888876554 345666665 999
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHhcCCC
Q 006375 613 HFSKSGRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 613 H~~~~~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
|++.....+ +.+ .+-+|++++|..+
T Consensus 193 H~f~~~~~~-l~~--~~~~~v~~~l~~~ 217 (218)
T d2fuka1 193 HFFHRKLID-LRG--ALQHGVRRWLPAT 217 (218)
T ss_dssp TTCTTCHHH-HHH--HHHHHHGGGCSSC
T ss_pred CCCCCCHHH-HHH--HHHHHHHHhcCCC
Confidence 977543332 332 4578999998765
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.82 E-value=3.4e-20 Score=179.50 Aligned_cols=196 Identities=15% Similarity=0.209 Sum_probs=140.5
Q ss_pred EEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCC-CCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 378 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 378 ~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
.+.|-..+..++. ++.|++ .+.|+||++|||++.... ..+...+..|+++||+|+.+|||.+++.. |.
T Consensus 41 dv~Yg~~~~~~lD--iy~P~~-----~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~~--~p-- 109 (261)
T d2pbla1 41 NLSYGEGDRHKFD--LFLPEG-----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVR--IS-- 109 (261)
T ss_dssp EEESSSSTTCEEE--EECCSS-----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSC--HH--
T ss_pred CcCCCCCcCeEEE--EeccCC-----CCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeeccccccccccc--Cc--
Confidence 4444333334443 355543 357999999999875544 44666678999999999999999876542 22
Q ss_pred ccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCC------CceeEEEecCCcccccccccCCC
Q 006375 457 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRP------DLFKAAVAAVPFVDVLTTMLDPT 530 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p------~~~~a~v~~~~~~d~~~~~~~~~ 530 (648)
..++|+.++++|+.++. ++||+|+|+|+||+|++.++.... ..++++++.+|+.|+...... .
T Consensus 110 -------~~~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 178 (261)
T d2pbla1 110 -------EITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRT-S 178 (261)
T ss_dssp -------HHHHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGS-T
T ss_pred -------hhHHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhhh-h
Confidence 35689999999999874 589999999999999988776543 257899999998886432210 0
Q ss_pred CCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCC
Q 006375 531 IPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELG 610 (648)
Q Consensus 531 ~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 610 (648)
.. ..++ .+++. ..+.||+.++.+...| +||+||++|..|+..|+++|+++|+. +.+.++ +
T Consensus 179 ----~~--~~~~--~~~~~---~~~~SP~~~~~~~~~P-~li~~G~~D~~~~~~qs~~~~~~l~~-----~~~~~~---~ 238 (261)
T d2pbla1 179 ----MN--EKFK--MDADA---AIAESPVEMQNRYDAK-VTVWVGGAERPAFLDQAIWLVEAWDA-----DHVIAF---E 238 (261)
T ss_dssp ----TH--HHHC--CCHHH---HHHTCGGGCCCCCSCE-EEEEEETTSCHHHHHHHHHHHHHHTC-----EEEEET---T
T ss_pred ----hc--cccc--CCHHH---HHHhCchhhcccCCCe-EEEEEecCCCchHHHHHHHHHHHhCC-----CceEeC---C
Confidence 00 1111 12332 3678999999887766 99999999999999999999999863 234454 7
Q ss_pred CCccC
Q 006375 611 AGHFS 615 (648)
Q Consensus 611 ~gH~~ 615 (648)
.+|+.
T Consensus 239 ~~HF~ 243 (261)
T d2pbla1 239 KHHFN 243 (261)
T ss_dssp CCTTT
T ss_pred CCchh
Confidence 78964
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.82 E-value=2.7e-20 Score=185.06 Aligned_cols=224 Identities=15% Similarity=0.096 Sum_probs=146.6
Q ss_pred eEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCCh-hhh
Q 006375 376 TERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGR-QWY 454 (648)
Q Consensus 376 ~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~-~~~ 454 (648)
+....+++.||.+|++|.+.|++. .+.+.|+||++||..+.. ..|...+..|+++||.|+.+|+||++|... .+.
T Consensus 4 ~~~h~~~~~dg~~l~~w~~~p~~~--~~~~~~~Vvi~HG~~~~~--~~~~~~a~~L~~~G~~Vi~~D~rGh~G~S~g~~~ 79 (302)
T d1thta_ 4 TIAHVLRVNNGQELHVWETPPKEN--VPFKNNTILIASGFARRM--DHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSID 79 (302)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTT--SCCCSCEEEEECTTCGGG--GGGHHHHHHHHTTTCCEEEECCCBCC--------
T ss_pred eeeeEEEcCCCCEEEEEEecCcCC--CCCCCCEEEEeCCCcchH--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccc
Confidence 355667889999999998888764 345689999999954432 347777889999999999999999743322 211
Q ss_pred hcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc---CCCC
Q 006375 455 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML---DPTI 531 (648)
Q Consensus 455 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~---~~~~ 531 (648)
.. ......+|+.++++||..++ +++|+++|+||||.+++.+|... .++++|+.+|+.++..... ....
T Consensus 80 ~~----~~~~~~~dl~~vi~~l~~~~---~~~i~lvG~SmGG~ial~~A~~~--~v~~li~~~g~~~~~~~~~~~~~~~~ 150 (302)
T d1thta_ 80 EF----TMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISDL--ELSFLITAVGVVNLRDTLEKALGFDY 150 (302)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTTS--CCSEEEEESCCSCHHHHHHHHHSSCG
T ss_pred CC----CHHHHHHHHHHHHHhhhccC---CceeEEEEEchHHHHHHHHhccc--ccceeEeecccccHHHHHHHHHhhcc
Confidence 11 11124578999999998764 47899999999999988877643 4889999999887543210 0000
Q ss_pred C-CCcccccc---c-CCCCCHHHH-HHHHcC------CccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCC
Q 006375 532 P-LTTAEWEE---W-GDPWKEEFY-FYMKSY------SPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTD 599 (648)
Q Consensus 532 ~-~~~~~~~~---~-g~~~~~~~~-~~~~~~------sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~ 599 (648)
+ .......+ + +.......+ ...... ++...++++++| +|++||++|+.||+.++.++++.+... .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-vLii~G~~D~~V~~~~~~~l~~~i~s~--~ 227 (302)
T d1thta_ 151 LSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVP-LIAFTANNDDWVKQEEVYDMLAHIRTG--H 227 (302)
T ss_dssp GGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSC-EEEEEETTCTTSCHHHHHHHHTTCTTC--C
T ss_pred chhhhhhccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCC-EEEEEeCCCCccCHHHHHHHHHhCCCC--C
Confidence 0 00000000 0 000011111 111111 244567788998 999999999999999999998887633 3
Q ss_pred CCeEEEEecCCCCccCCCc
Q 006375 600 DNILLFKCELGAGHFSKSG 618 (648)
Q Consensus 600 ~~~~~~~~~~~~gH~~~~~ 618 (648)
+++++++ +++|....+
T Consensus 228 ~kl~~~~---g~~H~l~e~ 243 (302)
T d1thta_ 228 CKLYSLL---GSSHDLGEN 243 (302)
T ss_dssp EEEEEET---TCCSCTTSS
T ss_pred ceEEEec---CCCcccccC
Confidence 4555554 999976543
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.81 E-value=1.9e-20 Score=179.04 Aligned_cols=193 Identities=16% Similarity=0.141 Sum_probs=136.6
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 454 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 454 (648)
.+|++++++.||.++.+++..|++ ++.|+||++|+++|... .....+..|+++||.|+++|+.+.++.+....
T Consensus 2 ~~e~v~~~~~dg~~~~a~~~~P~~-----~~~P~vl~~h~~~G~~~--~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~~~ 74 (233)
T d1dina_ 2 LTEGISIQSYDGHTFGALVGSPAK-----APAPVIVIAQEIFGVNA--FMRETVSWLVDQGYAAVCPDLYARQAPGTALD 74 (233)
T ss_dssp CCTTCCEECTTSCEECEEEECCSS-----SSEEEEEEECCTTBSCH--HHHHHHHHHHHTTCEEEEECGGGGTSTTCBCC
T ss_pred cceEEEEEcCCCCEEEEEEECCCC-----CCceEEEEeCCCCCCCH--HHHHHHHHHHhcCCcceeeeeccCCCcCcccC
Confidence 356788999999999999888854 57899999998776432 22334578899999999999877665443211
Q ss_pred hcc-----------cccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccc
Q 006375 455 ENG-----------KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVL 523 (648)
Q Consensus 455 ~~~-----------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~ 523 (648)
... ..........|+.++++++.+.+. +.+||+++|+|+||.++..++.+ +. +.++++..|..-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~-~~-~~~~~~~~~~~~-- 149 (233)
T d1dina_ 75 PQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAK-GY-VDRAVGYYGVGL-- 149 (233)
T ss_dssp TTSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHH-TC-SSEEEEESCSCG--
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeecccc-cc-cceecccccccc--
Confidence 000 001112356899999999988775 55899999999999999988876 33 556555443210
Q ss_pred ccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeE
Q 006375 524 TTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNIL 603 (648)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 603 (648)
.++...+.++++| +|++||++|++||.++..++.++++ .+.+.+++
T Consensus 150 --------------------------------~~~~~~~~~i~~P-vl~~~G~~D~~vp~e~~~~~~~~~~-~~~~~~~~ 195 (233)
T d1dina_ 150 --------------------------------EKQLNKVPEVKHP-ALFHMGGQDHFVPAPSRQLITEGFG-ANPLLQVH 195 (233)
T ss_dssp --------------------------------GGGGGGGGGCCSC-EEEEEETTCTTSCHHHHHHHHHHHT-TCTTEEEE
T ss_pred --------------------------------ccchhhhhccCCc-ceeeecccccCCCHHHHHHHHHHHh-cCCCEEEE
Confidence 0122233456677 9999999999999888887776665 46666666
Q ss_pred EEEecCCCCccCC
Q 006375 604 LFKCELGAGHFSK 616 (648)
Q Consensus 604 ~~~~~~~~gH~~~ 616 (648)
+|+ +++|++.
T Consensus 196 ~y~---ga~HgF~ 205 (233)
T d1dina_ 196 WYE---EAGHSFA 205 (233)
T ss_dssp EET---TCCTTTT
T ss_pred EEC---CCCcCCC
Confidence 665 8899653
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.81 E-value=3e-19 Score=184.92 Aligned_cols=254 Identities=15% Similarity=0.151 Sum_probs=173.7
Q ss_pred CCCCCCcceEEEEEeCC-----CCe--EEeEEEEEeeCccccCCCCcEEEEecCCCCC----------------------
Q 006375 368 GFDTNNYFTERKWASAS-----DGT--QIPICIVYRKNLVKLDGSDPLLLYGYGSYEI---------------------- 418 (648)
Q Consensus 368 ~~~~~~~~~~~~~~~s~-----~g~--~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~---------------------- 418 (648)
-|+.+.+..|.+++.+. ||+ .|.+.++.|++. +|.|+|+..+- |+.
T Consensus 15 ~~~~~~~~re~v~v~~~~dt~rDG~~d~l~~di~rP~~~----~k~Pvil~~sP-Y~~~~~~~~~~~~~~~~~~~~~~~~ 89 (405)
T d1lnsa3 15 TFDSSLLEREVLWVESPVDSEQRGENDLIKIQIIRPKST----EKLPVVMTASP-YHLGINDKANDLALHDMNVELEEKT 89 (405)
T ss_dssp CSCGGGCEEEEEEEECSCCTTCSSSCCEEEEEEEECCCS----SCEEEEEEECS-STTCCCHHHHHHHCCCCCCCCCCCC
T ss_pred eecCCCceEeEEEEeCCCCCCCCCCEeEEEEEEEccCCC----CCceEEEEeCC-cCCCCcccccccccccccccccccc
Confidence 46656666778888665 898 599998888764 68899996543 111
Q ss_pred ------------------------------CCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhH
Q 006375 419 ------------------------------CNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTD 468 (648)
Q Consensus 419 ------------------------------~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D 468 (648)
..........+.|+.+||+|+.+|.||.|+++..|...+. ...+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~~~~~~-----~e~~D 164 (405)
T d1lnsa3 90 SHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTSGDY-----QQIYS 164 (405)
T ss_dssp SEECCCCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCCTTSH-----HHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchHHHHhCCCEEEEECCCCCCCCCCccccCCh-----hhhhh
Confidence 0011112234789999999999999999998877753322 35689
Q ss_pred HHHHHHHHHHcCCC--------------CCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCC
Q 006375 469 FIACAEYLIKNCYC--------------TKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLT 534 (648)
Q Consensus 469 ~~~~~~~l~~~~~~--------------d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~ 534 (648)
..++|+||..+... ...||+++|.||||++..++|+..|..++|+|+.+++.|+...+........
T Consensus 165 ~~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~ 244 (405)
T d1lnsa3 165 MTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRS 244 (405)
T ss_dssp HHHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCC
T ss_pred HHHHHHHHHhcccccccccccccccccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCcccc
Confidence 99999999864322 2369999999999999999999888899999999999997654432111100
Q ss_pred ccccc--------cc-C---------------------------CCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCC
Q 006375 535 TAEWE--------EW-G---------------------------DPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLND 578 (648)
Q Consensus 535 ~~~~~--------~~-g---------------------------~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D 578 (648)
...+. .. . ....+...+++.+.+|..++.++++| +|+++|..|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP-~L~i~Gw~D 323 (405)
T d1lnsa3 245 PGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKAD-VLIVHGLQD 323 (405)
T ss_dssp CTTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSE-EEEEEETTC
T ss_pred ccchhhhhhhhhhccccccccccchhhhchhhhhhccchhhhhhhhccccchhhhhhcChhhhhhcCCCC-EEEEEeccC
Confidence 00000 00 0 00000111345778899999999998 999999999
Q ss_pred CccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC--chHHHHHHHHHHHHHHHHhcCCC
Q 006375 579 PRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS--GRFERLREAAFTYTFLMRALSML 640 (648)
Q Consensus 579 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~l~~~ 640 (648)
..|++.++.+++++|++ +.+.++++- ..+|.... .... + ...+++||.++|...
T Consensus 324 ~~v~~~~~~~~y~al~~-~~~~~Lilg----pw~H~~~~~~~~~d-~--~~~~~~wFD~~LkG~ 379 (405)
T d1lnsa3 324 WNVTPEQAYNFWKALPE-GHAKHAFLH----RGAHIYMNSWQSID-F--SETINAYFVAKLLDR 379 (405)
T ss_dssp CSSCTHHHHHHHHHSCT-TCCEEEEEE----SCSSCCCTTBSSCC-H--HHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHh-CCCcEEEEe----CCCCCCCcccccch-H--HHHHHHHHHHHhCCC
Confidence 99999999999999974 445555543 35785432 1122 1 124578999999653
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=1e-19 Score=174.49 Aligned_cols=210 Identities=16% Similarity=0.043 Sum_probs=135.9
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCC----cHhHHHHHHHHHHHc
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN----TFTDFIACAEYLIKN 479 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~----~~~D~~~~~~~l~~~ 479 (648)
++.|+||++||..+... .+...+..|+++||+|+++|+||+|+....+........... ...++.++..++...
T Consensus 22 ~~~~~vl~lHG~~~~~~--~~~~~~~~la~~G~~V~~~D~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (238)
T d1ufoa_ 22 APKALLLALHGLQGSKE--HILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEA 99 (238)
T ss_dssp SCCEEEEEECCTTCCHH--HHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHH--HHHHHHHHHHHCCCEEEEecCCCCCCCcccccccccchhhhhhhhhHHhHHHHHHHHhhhc
Confidence 35699999999665432 344455678889999999999998865432211100000001 112223333334444
Q ss_pred CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCcc
Q 006375 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPV 559 (648)
Q Consensus 480 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~ 559 (648)
+.+++.+++++|+|+||++++.++.++|+ ++++++..+..+.... .+...+..+... .+...++.
T Consensus 100 ~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~~~ 164 (238)
T d1ufoa_ 100 ERRFGLPLFLAGGSLGAFVAHLLLAEGFR-PRGVLAFIGSGFPMKL-------------PQGQVVEDPGVL-ALYQAPPA 164 (238)
T ss_dssp HHHHCCCEEEEEETHHHHHHHHHHHTTCC-CSCEEEESCCSSCCCC-------------CTTCCCCCHHHH-HHHHSCGG
T ss_pred cccCCceEEEEEecccHHHHHHHHhcCcc-hhheeeeeeecccccc-------------cccccccccccc-chhhhhhh
Confidence 56788999999999999999999999886 4555555444332211 111222333333 23456777
Q ss_pred ccCCCC-CCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhcC
Q 006375 560 DNVKAQ-NYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALS 638 (648)
Q Consensus 560 ~~~~~~-~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 638 (648)
.+..+. +.| +||+||++|..||++++.+++++|++.+.+.+...+. .+++||... .+.+ ....+||.++|.
T Consensus 165 ~~~~~~~~~P-~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~-~~g~gH~~~---~~~~---~~~~~f~~~~l~ 236 (238)
T d1ufoa_ 165 TRGEAYGGVP-LLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFV-EEGAGHTLT---PLMA---RVGLAFLEHWLE 236 (238)
T ss_dssp GCGGGGTTCC-EEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEE-ETTCCSSCC---HHHH---HHHHHHHHHHHH
T ss_pred hhhhhhcCCC-eEEEEcCCCCccCHHHHHHHHHHHHhcCCCceEEEEE-ECCCCCccC---HHHH---HHHHHHHHHHhc
Confidence 666555 666 9999999999999999999999999998876544443 348899653 2222 245789998874
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.81 E-value=1.5e-19 Score=180.76 Aligned_cols=236 Identities=14% Similarity=0.107 Sum_probs=155.2
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCC-CCCCCchhHHHHHHCC-CEEEEEccCCCCCCChh
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEIC-NDPAFNSSRLSLLDRG-FIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~-~~~~~~~~~~~l~~~G-~~v~~~~~rG~g~~g~~ 452 (648)
..+.+.++. +|.+|.+.++.|++. +++.|+||++|||.... ....+......++.+| +.|+.+|||...+...
T Consensus 45 ~~~~~~~~~-~g~~i~~~~y~P~~~---~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~p~~~~- 119 (308)
T d1u4na_ 45 EVREFDMDL-PGRTLKVRMYRPEGV---EPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHKF- 119 (308)
T ss_dssp EEEEEEEEE-TTEEEEEEEEECTTC---CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSCT-
T ss_pred cEEEEEEec-CCceEEEEEEecccc---CCCCCEEEEEecCeeeeeccccccchhhhhhhccccccccccccccccccc-
Confidence 356666664 788899999998764 45789999999985433 2334555566777775 6688899997765432
Q ss_pred hhhcccccCCCCcHhHHHHHHHHHHHcC---CCCCCeEEEEeeChhHHHHHHHHhhCCC----ceeEEEecCCccccccc
Q 006375 453 WYENGKFLKKKNTFTDFIACAEYLIKNC---YCTKEKLCIEGRSAGGLLIGAVLNMRPD----LFKAAVAAVPFVDVLTT 525 (648)
Q Consensus 453 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~~~a~v~~~~~~d~~~~ 525 (648)
...++|+.++++|+.++. .+|++||+++|+|+||++++.++....+ .+.+..+..|..+....
T Consensus 120 ----------p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (308)
T d1u4na_ 120 ----------PAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPA 189 (308)
T ss_dssp ----------THHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCCCCCCTT
T ss_pred ----------ccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCcccccccccccccccc
Confidence 235689999999999764 5899999999999999999888765432 34555566665543221
Q ss_pred ccCCCCCCCcccccccCCC--CCHH-HHHHH------------HcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHH
Q 006375 526 MLDPTIPLTTAEWEEWGDP--WKEE-FYFYM------------KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFV 590 (648)
Q Consensus 526 ~~~~~~~~~~~~~~~~g~~--~~~~-~~~~~------------~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~ 590 (648)
. +. ....+..+. .... ..... ...++.........||+||+||++|..+ .+++.|+
T Consensus 190 ~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l~--~~~~~~~ 260 (308)
T d1u4na_ 190 H-----PP--ASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLR--DVGKLYA 260 (308)
T ss_dssp S-----CC--HHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTTH--HHHHHHH
T ss_pred c-----cc--chhhhccccccccchhhhhhhhcccCccccccchhhhhhhchhhcCCCCeeEEecCcCCch--HHHHHHH
Confidence 1 00 000000000 0000 00000 1123343344447788999999999765 5899999
Q ss_pred HHHHhcCCCCCeEEEEecCCCCccCCC---chHHHHHHHHHHHHHHHHhc
Q 006375 591 AKLREMKTDDNILLFKCELGAGHFSKS---GRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 591 ~~l~~~~~~~~~~~~~~~~~~gH~~~~---~~~~~~~~~~~~~~fl~~~l 637 (648)
++|+++|+++++++++ +.+|++.. ...+..+....+.+||++.|
T Consensus 261 ~~L~~~G~~v~~~~~~---g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 261 EALNKAGVKVEIENFE---DLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHHHTTCCEEEEEEE---EEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEEEEC---CCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999988887 66885421 12233344556788998876
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.81 E-value=4.3e-19 Score=182.16 Aligned_cols=149 Identities=19% Similarity=0.269 Sum_probs=119.1
Q ss_pred CCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecC--CCC--CCC-CC----CCchhHHHHHHCCCEEEEEc
Q 006375 372 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYG--SYE--ICN-DP----AFNSSRLSLLDRGFIFAIAQ 442 (648)
Q Consensus 372 ~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hG--g~~--~~~-~~----~~~~~~~~l~~~G~~v~~~~ 442 (648)
..+..+.+.++..||++|.+.++.|++. ++.|+||+.|+ +.+ ... .. .+....+.|+++||+|+++|
T Consensus 20 ~~~~~~~v~i~~rDG~~L~~~v~~P~~~----~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d 95 (381)
T d1mpxa2 20 NDYIKREVMIPMRDGVKLHTVIVLPKGA----KNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD 95 (381)
T ss_dssp CSEEEEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred cCceEEEEEEECCCCCEEEEEEEEeCCC----CCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEe
Confidence 4567788999999999999999999764 68999999875 111 111 11 12234578999999999999
Q ss_pred cCCCCCCChhhhhcccc-----cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecC
Q 006375 443 IRGGGELGRQWYENGKF-----LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV 517 (648)
Q Consensus 443 ~rG~g~~g~~~~~~~~~-----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~ 517 (648)
+||.|+++..|...+.. ....+..+|+.++++|+.++..++.+||+++|+|+||++++++|++.|..++|+|+.+
T Consensus 96 ~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~ 175 (381)
T d1mpxa2 96 VRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPES 175 (381)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred cCccCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeec
Confidence 99999887776543222 2234578999999999999988889999999999999999999998998999999999
Q ss_pred Ccccccc
Q 006375 518 PFVDVLT 524 (648)
Q Consensus 518 ~~~d~~~ 524 (648)
|+.|...
T Consensus 176 ~~~d~~~ 182 (381)
T d1mpxa2 176 PMIDGWM 182 (381)
T ss_dssp CCCCTTT
T ss_pred ccccccc
Confidence 9998653
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.80 E-value=1.1e-18 Score=174.12 Aligned_cols=216 Identities=19% Similarity=0.187 Sum_probs=145.7
Q ss_pred cceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCC-CCCchhHHHHHH-CCCEEEEEccCCCCCCCh
Q 006375 374 YFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLD-RGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 374 ~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~-~G~~v~~~~~rG~g~~g~ 451 (648)
...+.+++++.+| +|++.++.|+. +.|+||++|||...... ..+......++. .|++|+.+|||.+.+..-
T Consensus 54 ~~~~~~~i~~~~g-~i~~~iy~P~~------~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrlap~~~~ 126 (311)
T d1jjia_ 54 ERVEDRTIKGRNG-DIRVRVYQQKP------DSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHKF 126 (311)
T ss_dssp SEEEEEEEEETTE-EEEEEEEESSS------SEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSCT
T ss_pred ceEEEEEEeCCCC-cEEEEEEcCCC------CceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEecccccccccc
Confidence 3567788888887 69999887754 35999999998554433 334444455655 599999999998876432
Q ss_pred hhhhcccccCCCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhh----CCCceeEEEecCCcccccc
Q 006375 452 QWYENGKFLKKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM----RPDLFKAAVAAVPFVDVLT 524 (648)
Q Consensus 452 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~----~p~~~~a~v~~~~~~d~~~ 524 (648)
...++|+.++++|+.++ ..+|++||+++|.|+||++++.++.. ......+.++..|.+|...
T Consensus 127 -----------p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~~~~~~ 195 (311)
T d1jjia_ 127 -----------PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVA 195 (311)
T ss_dssp -----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSS
T ss_pred -----------chhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecceeeecc
Confidence 23568999999999876 35899999999999999988776543 2336788999999888543
Q ss_pred ccc-----CCCCCCCcccc----cccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHh
Q 006375 525 TML-----DPTIPLTTAEW----EEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLRE 595 (648)
Q Consensus 525 ~~~-----~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~ 595 (648)
... ........... ..+..+..... .-...||+....+ ..||+||+||++|..+ .++..|+++|++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sp~~~~~~-~~pP~li~~g~~D~l~--d~~~~~~~~L~~ 270 (311)
T d1jjia_ 196 PTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDK--FNPLASVIFADLE-NLPPALIITAEYDPLR--DEGEVFGQMLRR 270 (311)
T ss_dssp CCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGG--GCTTTSGGGSCCT-TCCCEEEEEEEECTTH--HHHHHHHHHHHH
T ss_pred CcccccccccccccccHHHhhhhhhhcccccccc--cccccchhhcccc-cCCCEEEEEcCCCCCh--HHHHHHHHHHHH
Confidence 210 00000000000 00000000000 0012366655433 5677999999999765 489999999999
Q ss_pred cCCCCCeEEEEecCCCCccC
Q 006375 596 MKTDDNILLFKCELGAGHFS 615 (648)
Q Consensus 596 ~~~~~~~~~~~~~~~~gH~~ 615 (648)
+|+++++++++ +.+|++
T Consensus 271 ~Gv~v~~~~~~---g~~H~F 287 (311)
T d1jjia_ 271 AGVEASIVRYR---GVLHGF 287 (311)
T ss_dssp TTCCEEEEEEE---EEETTG
T ss_pred CCCCEEEEEEC---CCCCcc
Confidence 99999888888 678854
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.77 E-value=1.5e-18 Score=171.45 Aligned_cols=254 Identities=15% Similarity=0.057 Sum_probs=165.4
Q ss_pred CCcceEEEEEeCC-CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCch---hHHHHHHCCCEEEEEccCCCC
Q 006375 372 NNYFTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---SRLSLLDRGFIFAIAQIRGGG 447 (648)
Q Consensus 372 ~~~~~~~~~~~s~-~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~~~rG~g 447 (648)
+.+..+.+.+.|. .|.++++.+..| .+++|+|+++||+.+......|.. ....+.+.|+++++++..+.+
T Consensus 5 ~~~~v~~~~~~s~~~~r~~~~~v~~p------~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 78 (288)
T d1sfra_ 5 PGLPVEYLQVPSPSMGRDIKVQFQSG------GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSS 78 (288)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEECC------STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTC
T ss_pred CCCEEEEEEEECCCCCcEEEEEEeCC------CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCCC
Confidence 3444566666654 677888875543 257999999999654433322322 134556679999999988776
Q ss_pred CCChhhhhcc-cccCCCCcHhH--HHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccc
Q 006375 448 ELGRQWYENG-KFLKKKNTFTD--FIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLT 524 (648)
Q Consensus 448 ~~g~~~~~~~-~~~~~~~~~~D--~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~ 524 (648)
.++..+.... ....+...+++ +.+.+.+|.++..+|++|++|+|+||||++|+.++.++|++|+++++.+|.+++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~~ 158 (288)
T d1sfra_ 79 FYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQ 158 (288)
T ss_dssp TTCBCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTS
T ss_pred CCccccCcccccccccchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCcccccc
Confidence 5544332211 11111223333 34677888888889999999999999999999999999999999999999887543
Q ss_pred cccCCCCC------CCcccccccCCCCCHHHHHHHHcCCccccCCCC--CCCeEEEeecCCCCccCC-------------
Q 006375 525 TMLDPTIP------LTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ--NYPHILVTAGLNDPRVMY------------- 583 (648)
Q Consensus 525 ~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~--~~P~~li~~g~~D~~v~~------------- 583 (648)
........ .....-..+|.+..+ .+..++|+.++.+. +.+++++.+|+.|..++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~~ 234 (288)
T d1sfra_ 159 AMGPTLIGLAMGDAGGYKASDMWGPKEDP----AWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFV 234 (288)
T ss_dssp TTHHHHHHHHHHHTTSCCHHHHHCSTTST----HHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHH
T ss_pred cccchhhhhhhhhcccccHhhhcCCcchh----hhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccccchhHHHH
Confidence 21100000 000000112333322 34667888877654 233599999999987774
Q ss_pred -chHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHH-HHHHHHHHHHHHhcCCCCC
Q 006375 584 -SEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERL-REAAFTYTFLMRALSMLPS 642 (648)
Q Consensus 584 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~-~~~~~~~~fl~~~l~~~~~ 642 (648)
.+++++.++|+++++++..+.++ .+++|.. ..+ +.+.+.+.||.+.||..++
T Consensus 235 ~~~~~~l~~~l~~~g~~~~~~~~~--~~G~H~w-----~~w~~~l~~~l~~l~~alg~~~~ 288 (288)
T d1sfra_ 235 RTSNIKFQDAYNAGGGHNGVFDFP--DSGTHSW-----EYWGAQLNAMKPDLQRALGATPN 288 (288)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECC--SCCCSSH-----HHHHHHHHHTHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEC--CCCccCh-----hHHHHHHHHHHHHHHHhcCCCCC
Confidence 56788999999999887655554 2356942 122 2344678999999998753
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.76 E-value=1.7e-17 Score=170.54 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=118.8
Q ss_pred CCcceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCC----CCCCCCC------CCchhHHHHHHCCCEEEEE
Q 006375 372 NNYFTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGS----YEICNDP------AFNSSRLSLLDRGFIFAIA 441 (648)
Q Consensus 372 ~~~~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg----~~~~~~~------~~~~~~~~l~~~G~~v~~~ 441 (648)
..+..+.++++..||++|.+.++.|++. ++.|+||..|+- ....... .+......|+++||+|+.+
T Consensus 24 ~~~~~~~v~ipmrDG~~L~~~v~~P~~~----~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~ 99 (385)
T d2b9va2 24 RDYIKREVMVPMRDGVKLYTVIVIPKNA----RNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQ 99 (385)
T ss_dssp CSEEEEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEE
T ss_pred CCCeEeEEEEECCCCCEEEEEEEEcCCC----CceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEEE
Confidence 4567889999999999999999999764 789999987641 1111111 1223456899999999999
Q ss_pred ccCCCCCCChhhhhcccc-----cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEec
Q 006375 442 QIRGGGELGRQWYENGKF-----LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 516 (648)
Q Consensus 442 ~~rG~g~~g~~~~~~~~~-----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~ 516 (648)
|+||.|+++..|...... .......+|..++++||.++...+.+||+++|+|+||++++++|++.|+.++|+|..
T Consensus 100 d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~~ 179 (385)
T d2b9va2 100 DIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPE 179 (385)
T ss_dssp ECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred cCCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEEe
Confidence 999999998887654322 233457899999999999998778899999999999999999999888899999999
Q ss_pred CCcccccc
Q 006375 517 VPFVDVLT 524 (648)
Q Consensus 517 ~~~~d~~~ 524 (648)
++..|...
T Consensus 180 ~~~~d~~~ 187 (385)
T d2b9va2 180 SPMVDGWM 187 (385)
T ss_dssp EECCCTTT
T ss_pred cccccccc
Confidence 98887643
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.73 E-value=3e-17 Score=152.83 Aligned_cols=187 Identities=14% Similarity=0.087 Sum_probs=128.1
Q ss_pred CCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccc-c-C---CCCcHhHHHHHHHHHH
Q 006375 403 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF-L-K---KKNTFTDFIACAEYLI 477 (648)
Q Consensus 403 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~-~-~---~~~~~~D~~~~~~~l~ 477 (648)
+++.|+||++||..+.. ..|...+..+. +++.|+.++....+..+..|...... . . .....+++...++++.
T Consensus 11 ~~~~P~vi~lHG~g~~~--~~~~~~~~~l~-~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 87 (202)
T d2h1ia1 11 DTSKPVLLLLHGTGGNE--LDLLPLAEIVD-SEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTKELNEFLDEAA 87 (202)
T ss_dssp CTTSCEEEEECCTTCCT--TTTHHHHHHHH-TTSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCH--HHHHHHHHHhc-cCCceeeecccccCCCCccccccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 35679999999954332 23444444444 68888888654333222222111000 0 0 1123456777788888
Q ss_pred HcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCC
Q 006375 478 KNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYS 557 (648)
Q Consensus 478 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~s 557 (648)
++..+|+.||+++|.|+||.+++.++.++|+.++++++.+|.+....
T Consensus 88 ~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~~--------------------------------- 134 (202)
T d2h1ia1 88 KEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG--------------------------------- 134 (202)
T ss_dssp HHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS---------------------------------
T ss_pred HhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCccc---------------------------------
Confidence 88889999999999999999999999999999999999887643100
Q ss_pred ccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHhc
Q 006375 558 PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRAL 637 (648)
Q Consensus 558 p~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 637 (648)
......... +++++||++|++||+.++++++++|++++.+.+++.++ +||... .+ .+.++.+||.++|
T Consensus 135 -~~~~~~~~~-~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~----ggH~~~---~~---~~~~~~~wl~k~f 202 (202)
T d2h1ia1 135 -MQLANLAGK-SVFIAAGTNDPICSSAESEELKVLLENANANVTMHWEN----RGHQLT---MG---EVEKAKEWYDKAF 202 (202)
T ss_dssp -CCCCCCTTC-EEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEEEEES----STTSCC---HH---HHHHHHHHHHHHC
T ss_pred -ccccccccc-hhhcccccCCCccCHHHHHHHHHHHHHCCCCEEEEEEC----CCCcCC---HH---HHHHHHHHHHHhC
Confidence 000111233 49999999999999999999999999999887666663 479642 22 2345689999875
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=3.2e-18 Score=166.57 Aligned_cols=192 Identities=13% Similarity=0.051 Sum_probs=122.8
Q ss_pred CCCcEEEEecCCCCCCC---CCCCchhH----HHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHH
Q 006375 404 GSDPLLLYGYGSYEICN---DPAFNSSR----LSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYL 476 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~---~~~~~~~~----~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l 476 (648)
++.|+||++|||..... ...|.... ..++++||.|+.+|||++++.. ....++|+.++++|+
T Consensus 29 ~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~~-----------~~~~~~d~~~~~~~l 97 (263)
T d1vkha_ 29 NTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEIT-----------NPRNLYDAVSNITRL 97 (263)
T ss_dssp TCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcchh-----------hhHHHHhhhhhhhcc
Confidence 56799999999854322 22233333 2334679999999999887642 124578999999999
Q ss_pred HHcCCCCCCeEEEEeeChhHHHHHHHHhhCCC-----------------ceeEEEecCCcccccccccCCCCCCCcccc-
Q 006375 477 IKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPD-----------------LFKAAVAAVPFVDVLTTMLDPTIPLTTAEW- 538 (648)
Q Consensus 477 ~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----------------~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~- 538 (648)
.++. ++.+|+++|+|+||.+++.++...++ ...+.+...+..++..... ..+......
T Consensus 98 ~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 173 (263)
T d1vkha_ 98 VKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLI--EYPEYDCFTR 173 (263)
T ss_dssp HHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHH--HCGGGHHHHH
T ss_pred cccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhh--hccccchhhh
Confidence 9874 67899999999999999988876543 3455555566555433211 000000000
Q ss_pred cccCC-CC--CHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccC
Q 006375 539 EEWGD-PW--KEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 615 (648)
Q Consensus 539 ~~~g~-~~--~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~ 615 (648)
..++. +. ..... ... ......+.+...| +|++||++|++||+.++.+|+++|++.+++.++++++ +++|..
T Consensus 174 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~P-~lii~G~~D~~vp~~~s~~l~~~L~~~g~~~~~~~~~---~~~H~~ 247 (263)
T d1vkha_ 174 LAFPDGIQMYEEEPS-RVM-PYVKKALSRFSID-MHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDD---LGLHND 247 (263)
T ss_dssp HHCTTCGGGCCCCHH-HHH-HHHHHHHHHHTCE-EEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEEC---CCSGGG
T ss_pred ccccccccccccccc-ccC-ccccccccccCCC-eeeeecCCCcccCHHHHHHHHHHHHHCCCCEEEEEEC---CCCchh
Confidence 01111 10 00000 000 0011223334555 9999999999999999999999999999998877775 788954
Q ss_pred C
Q 006375 616 K 616 (648)
Q Consensus 616 ~ 616 (648)
.
T Consensus 248 ~ 248 (263)
T d1vkha_ 248 V 248 (263)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.71 E-value=3.8e-16 Score=150.92 Aligned_cols=221 Identities=15% Similarity=0.094 Sum_probs=136.8
Q ss_pred cceEEEEEeC-CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCC-chh----HHHHHHCC----CEEEEEcc
Q 006375 374 YFTERKWASA-SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAF-NSS----RLSLLDRG----FIFAIAQI 443 (648)
Q Consensus 374 ~~~~~~~~~s-~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~-~~~----~~~l~~~G----~~v~~~~~ 443 (648)
...+.+.+.| .+|++++++++.|++. ..++++|+|+++||+.+....... ... ...+...+ +.+...+.
T Consensus 20 g~~~~~~~~S~~~g~~~~~~v~lP~~y-~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (255)
T d1jjfa_ 20 GQVVNISYFSTATNSTRPARVYLPPGY-SKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNT 98 (255)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECTTC-CTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECC
T ss_pred eEEEEEEEEecCCCCEEEEEEEeCCCC-CCCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeeccc
Confidence 3467776765 4789999999999987 777889999999997665443211 111 12223332 33444433
Q ss_pred CCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc--CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccc
Q 006375 444 RGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN--CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVD 521 (648)
Q Consensus 444 rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d 521 (648)
.........+.. . ..-..+.+++.++.++ ..+|+++++++|+|+||+++..++.++|++|+++++.+|..+
T Consensus 99 ~~~~~~~~~~~~----~---~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~~~ 171 (255)
T d1jjfa_ 99 NAAGPGIADGYE----N---FTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPN 171 (255)
T ss_dssp CCCCTTCSCHHH----H---HHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTT
T ss_pred cccccccccccc----c---hHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccCcC
Confidence 222111111110 0 0112223344444443 447899999999999999999999999999999999988765
Q ss_pred ccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCC
Q 006375 522 VLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN 601 (648)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~ 601 (648)
..... ..+ + .+...... ..|+++|.||++|..++ ..++++++|++++.+++
T Consensus 172 ~~~~~------------~~~--~------------~~~~~~~~-~~~~~~i~~G~~D~~~~--~~~~~~~~L~~~g~~~~ 222 (255)
T d1jjfa_ 172 TYPNE------------RLF--P------------DGGKAARE-KLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHV 222 (255)
T ss_dssp SCCHH------------HHC--T------------TTTHHHHH-HCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCCE
T ss_pred Ccccc------------ccc--c------------cHHHHhhc-cCCcceEEeCCCCCCch--HHHHHHHHHHHCCCCEE
Confidence 32111 000 0 01111111 22469999999999877 56799999999999987
Q ss_pred eEEEEecCCCCccCCCchHHHHHHHHHHHHHH--HHhcCCCC
Q 006375 602 ILLFKCELGAGHFSKSGRFERLREAAFTYTFL--MRALSMLP 641 (648)
Q Consensus 602 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl--~~~l~~~~ 641 (648)
+..++ ++||.. ..+++. ..+|| .++.+++.
T Consensus 223 ~~~~~---~ggH~~-----~~W~~~--l~~fl~~~~~~~~~~ 254 (255)
T d1jjfa_ 223 YWLIQ---GGGHDF-----NVWKPG--LWNFLQMADEAGLTR 254 (255)
T ss_dssp EEEET---TCCSSH-----HHHHHH--HHHHHHHHHHHTTTC
T ss_pred EEEEC---CCCcCH-----HHHHHH--HHHHHHHHHhcCCcC
Confidence 76665 889942 233331 23444 56666653
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.70 E-value=2e-17 Score=159.11 Aligned_cols=226 Identities=14% Similarity=0.038 Sum_probs=138.1
Q ss_pred ceEEEEEeCC-CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhh
Q 006375 375 FTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQW 453 (648)
Q Consensus 375 ~~~~~~~~s~-~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~ 453 (648)
.++++.+.|. .|.+++++++.|++. . ++++|+||++||+....... .......++.+|....++.+...++.+..+
T Consensus 14 ~~~~~~~~S~~lg~~~~~~v~~P~~~-~-~~~~Pvvv~lhG~~~~~~~~-~~~~l~~l~~~~~~~~~i~v~~~~~~~~~~ 90 (246)
T d3c8da2 14 PAKEIIWKSERLKNSRRVWIFTTGDV-T-AEERPLAVLLDGEFWAQSMP-VWPVLTSLTHRQQLPPAVYVLIDAIDTTHR 90 (246)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEC-------CCCCEEEESSHHHHHHTSC-CHHHHHHHHHTTSSCSCEEEEECCCSHHHH
T ss_pred CcEEEEEECCCCCCEEEEEEEECCCC-C-CCCCCEEEEeCCcchhccCc-HHHHHHHHHHhCCCCceEEeeccccccccc
Confidence 4577777775 488899999999876 3 46799999999975433222 333456677776432222222111221111
Q ss_pred hhcccccCCCCcHhHH-H-HHHHHHHHc--CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCC
Q 006375 454 YENGKFLKKKNTFTDF-I-ACAEYLIKN--CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP 529 (648)
Q Consensus 454 ~~~~~~~~~~~~~~D~-~-~~~~~l~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~ 529 (648)
... ......+.++ . .++.++..+ ..+|+++++|+|+||||++++.++.++|++|+++++.+|..++....
T Consensus 91 ~~~---~~~~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg~~~~~~~~--- 164 (246)
T d3c8da2 91 AHE---LPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG--- 164 (246)
T ss_dssp HHH---SSSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTT---
T ss_pred ccc---cCccHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCcccccccCC---
Confidence 110 1111112222 1 222233332 34789999999999999999999999999999999999987653221
Q ss_pred CCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecC
Q 006375 530 TIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCEL 609 (648)
Q Consensus 530 ~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 609 (648)
....... ...++.....+...| +++.+|+.|+++ ..++++|+++|+++|.++++.+++
T Consensus 165 -------------~~~~~~~----~~~~~~~~~~~~~~~-~~l~~G~~D~~~-~~~~~~l~~~L~~~g~~~~~~~~~--- 222 (246)
T d3c8da2 165 -------------GQQEGVL----LEKLKAGEVSAEGLR-IVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVD--- 222 (246)
T ss_dssp -------------SSSCCHH----HHHHHTTSSCCCSCE-EEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEES---
T ss_pred -------------ccchHHH----HHHhhhhhhhccCCC-eEEEecCCCcch-hHHHHHHHHHHHHCCCCEEEEEeC---
Confidence 1111111 122344455555565 999999999877 478999999999999987655553
Q ss_pred CCCccCCCchHHHHH-HHHHHHHHHHHhc
Q 006375 610 GAGHFSKSGRFERLR-EAAFTYTFLMRAL 637 (648)
Q Consensus 610 ~~gH~~~~~~~~~~~-~~~~~~~fl~~~l 637 (648)
+ ||.. ..++ .+.+.++||.+.|
T Consensus 223 G-gH~~-----~~W~~~l~~~l~~l~~~~ 245 (246)
T d3c8da2 223 G-GHDA-----LCWRGGLMQGLIDLWQPL 245 (246)
T ss_dssp C-CSCH-----HHHHHHHHHHHHHHHGGG
T ss_pred C-CCCh-----HHHHHHHHHHHHHHHHhh
Confidence 4 7832 2232 3456688887765
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.70 E-value=9.1e-16 Score=144.11 Aligned_cols=211 Identities=15% Similarity=0.080 Sum_probs=148.0
Q ss_pred EEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCC--CCCCCCC-CchhHHHHHHCCCEEEEEccCCCCCCChhhh
Q 006375 378 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSY--EICNDPA-FNSSRLSLLDRGFIFAIAQIRGGGELGRQWY 454 (648)
Q Consensus 378 ~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~--~~~~~~~-~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~ 454 (648)
++++...+| +|.+++ .|... +..|++|++||.+ |.++... ....+..|.++||.++.+|+||.|.....|
T Consensus 2 ev~i~g~~G-~Le~~~-~~~~~----~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~G~~- 74 (218)
T d2i3da1 2 EVIFNGPAG-RLEGRY-QPSKE----KSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGEF- 74 (218)
T ss_dssp EEEEEETTE-EEEEEE-ECCSS----TTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSCC-
T ss_pred cEEEeCCCc-cEEEEE-eCCCC----CCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCcccc-
Confidence 367888888 799984 44332 4568999999853 3333322 223456788899999999999988764443
Q ss_pred hcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCC
Q 006375 455 ENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLT 534 (648)
Q Consensus 455 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~ 534 (648)
.......+|..++++|+..+... ..++.+.|+|+||.+++.++.+.+. ..++++..|.......
T Consensus 75 -----~~~~~e~~d~~aa~~~~~~~~~~-~~~~~~~g~S~G~~~a~~~a~~~~~-~~~~~~~~~~~~~~~~--------- 138 (218)
T d2i3da1 75 -----DHGAGELSDAASALDWVQSLHPD-SKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYDF--------- 138 (218)
T ss_dssp -----CSSHHHHHHHHHHHHHHHHHCTT-CCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSCC---------
T ss_pred -----ccchhHHHHHHHHHhhhhccccc-ccceeEEeeehHHHHHHHHHHhhcc-ccceeeccccccccch---------
Confidence 23335668999999999987653 3578999999999999999888764 5666666654332110
Q ss_pred cccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcC-CCCCeEEEEecCCCCc
Q 006375 535 TAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMK-TDDNILLFKCELGAGH 613 (648)
Q Consensus 535 ~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~gH 613 (648)
..+.....| +|++||+.|..++..+..+++++++..+ ...++++++ +++|
T Consensus 139 -------------------------~~~~~~~~p-~l~i~g~~D~~~~~~~~~~l~~~~~~~~~~~~~~~vi~---gAdH 189 (218)
T d2i3da1 139 -------------------------SFLAPCPSS-GLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLP---GANH 189 (218)
T ss_dssp -------------------------TTCTTCCSC-EEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEET---TCCT
T ss_pred -------------------------hhccccCCC-ceeeecccceecChHHHHHHHHHHhhccCCCccEEEeC---CCCC
Confidence 012223456 9999999999999999999999998753 333445554 8999
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhcCCCCCC
Q 006375 614 FSKSGRFERLREAAFTYTFLMRALSMLPSV 643 (648)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 643 (648)
++... .+.+.+ .+.+||.++|..+..|
T Consensus 190 fF~g~-~~~l~~--~v~~~l~~~l~~~~~p 216 (218)
T d2i3da1 190 FFNGK-VDELMG--ECEDYLDRRLNGELVP 216 (218)
T ss_dssp TCTTC-HHHHHH--HHHHHHHHHHTTCSSC
T ss_pred CCcCC-HHHHHH--HHHHHHHHhcCCCCCC
Confidence 87533 333332 4689999999876554
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.68 E-value=1.5e-16 Score=162.57 Aligned_cols=140 Identities=20% Similarity=0.179 Sum_probs=97.3
Q ss_pred CcceEEEEEeCCCCeEEeEEEEEe-eCccccCCCCcEEEEecCCCCCCCCCCC----chhHHHHHHCCCEEEEEccCCCC
Q 006375 373 NYFTERKWASASDGTQIPICIVYR-KNLVKLDGSDPLLLYGYGSYEICNDPAF----NSSRLSLLDRGFIFAIAQIRGGG 447 (648)
Q Consensus 373 ~~~~~~~~~~s~~g~~i~~~l~~~-~~~~~~~~~~P~vl~~hGg~~~~~~~~~----~~~~~~l~~~G~~v~~~~~rG~g 447 (648)
.|..|+..+++.||..|.++.+.. +......++.|+||++||..+++..+.. ...+..|+++||.|+++|.||.|
T Consensus 24 ~y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~~~~~~~~~~sla~~L~~~Gy~V~~~D~rG~G 103 (377)
T d1k8qa_ 24 GYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGNT 103 (377)
T ss_dssp TCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTST
T ss_pred CCCceEEEEEcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccchhHHhhcCccchHHHHHHHCCCEEEEEcCCCCC
Confidence 466788999999999888775532 2221345667999999997665443322 22457889999999999999988
Q ss_pred CCChhhhhccc-ccCC-----CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEE
Q 006375 448 ELGRQWYENGK-FLKK-----KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAV 514 (648)
Q Consensus 448 ~~g~~~~~~~~-~~~~-----~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v 514 (648)
.....-..... .... .....|+.++++++.+.- ..+++.++||||||.+++.++.++|+.+++++
T Consensus 104 ~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~--g~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~ 174 (377)
T d1k8qa_ 104 WARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIK 174 (377)
T ss_dssp TSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTEE
T ss_pred CCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHc--CCCCEEEEEecchHHHHHHHHHhhhhhhhhce
Confidence 76432110000 0000 124578899999988752 23789999999999999999999998655444
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.4e-17 Score=153.94 Aligned_cols=193 Identities=16% Similarity=0.111 Sum_probs=118.5
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCC
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 463 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 463 (648)
.+|.+|......|.. +...|.||++||..+....+.....+..|+++||.|+++|+||.|..... ........
T Consensus 13 v~G~~i~y~~~~~~~----~~~~~~vvllHG~~~~~~~w~~~~~~~~la~~gy~via~D~~G~G~S~~~---~~~~~~~~ 85 (208)
T d1imja_ 13 VQGQALFFREALPGS----GQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEA---AAPAPIGE 85 (208)
T ss_dssp ETTEEECEEEEECSS----SCCSCEEEECCCTTCCHHHHHHHTHHHHHHHTTCEEEEECCTTSGGGTTS---CCSSCTTS
T ss_pred ECCEEEEEEEecCCC----CCCCCeEEEECCCCCChhHHhhhHHHHHHHHcCCeEEEeecccccCCCCC---Ccccccch
Confidence 478888776555433 24567899999976544332222235678999999999999987643211 00011111
Q ss_pred -CcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccC
Q 006375 464 -NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWG 542 (648)
Q Consensus 464 -~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g 542 (648)
...+++.+.++.+ +.+++.++|+||||.+++.++.++|++++++|+.+|...- ++
T Consensus 86 ~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~~-----------------~~- 141 (208)
T d1imja_ 86 LAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTD-----------------KI- 141 (208)
T ss_dssp CCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGG-----------------GS-
T ss_pred hhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCccccc-----------------cc-
Confidence 1123333333332 2368899999999999999999999999999998874210 00
Q ss_pred CCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHH
Q 006375 543 DPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFER 622 (648)
Q Consensus 543 ~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 622 (648)
.. .+..++++| +|+++|++|+.+|.. .+ .++. -...++++++ ++||....+.++.
T Consensus 142 ---~~------------~~~~~i~~P-~Lii~G~~D~~~~~~--~~---~~~~-~~~~~~~~i~---~~gH~~~~~~p~~ 196 (208)
T d1imja_ 142 ---NA------------ANYASVKTP-ALIVYGDQDPMGQTS--FE---HLKQ-LPNHRVLIMK---GAGHPCYLDKPEE 196 (208)
T ss_dssp ---CH------------HHHHTCCSC-EEEEEETTCHHHHHH--HH---HHTT-SSSEEEEEET---TCCTTHHHHCHHH
T ss_pred ---cc------------ccccccccc-cccccCCcCcCCcHH--HH---HHHh-CCCCeEEEEC---CCCCchhhhCHHH
Confidence 01 112345788 999999999987643 22 2222 2234445554 8999643334444
Q ss_pred HHHHHHHHHHHH
Q 006375 623 LREAAFTYTFLM 634 (648)
Q Consensus 623 ~~~~~~~~~fl~ 634 (648)
+.+ .+.+||.
T Consensus 197 ~~~--~l~~Fl~ 206 (208)
T d1imja_ 197 WHT--GLLDFLQ 206 (208)
T ss_dssp HHH--HHHHHHH
T ss_pred HHH--HHHHHHh
Confidence 433 4567775
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.67 E-value=2.6e-15 Score=147.94 Aligned_cols=212 Identities=16% Similarity=0.131 Sum_probs=131.0
Q ss_pred CCcEEEEecCCCCCCCCCCCc-hhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFN-SSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~-~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
..|.||++||...+.. .|. .....|+++||.|+++|.||.|....... .....+++|+.+.+..+++. .+
T Consensus 21 ~~p~vvl~HG~~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~-----~~~~~~~~~~~~d~~~ll~~--l~ 91 (297)
T d1q0ra_ 21 ADPALLLVMGGNLSAL--GWPDEFARRLADGGLHVIRYDHRDTGRSTTRDF-----AAHPYGFGELAADAVAVLDG--WG 91 (297)
T ss_dssp TSCEEEEECCTTCCGG--GSCHHHHHHHHTTTCEEEEECCTTSTTSCCCCT-----TTSCCCHHHHHHHHHHHHHH--TT
T ss_pred CCCEEEEECCCCcChh--HHHHHHHHHHHhCCCEEEEEeCCCCcccccccc-----cccccccchhhhhhcccccc--cc
Confidence 4689999999754432 233 34567888999999999999887643221 12224678877766666654 23
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc-----------cCCCCCCCcccc--------------
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-----------LDPTIPLTTAEW-------------- 538 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~-----------~~~~~~~~~~~~-------------- 538 (648)
.+++.++|+|+||.+++.++.++|++++++|+.++........ .....+.....+
T Consensus 92 ~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (297)
T d1q0ra_ 92 VDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLDGLPGPQQPFLDALALMNQPAEGR 171 (297)
T ss_dssp CSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSSCSCCCCHHHHHHHHHHHSCCCSH
T ss_pred ccceeeccccccchhhhhhhcccccceeeeEEEccccccccchhhhHHHhhhhhhhhhhhhhhHHHHHHHHHhccccchh
Confidence 4689999999999999999999999999999877654321100 000000000000
Q ss_pred --------------cccCCCCCHHHHHHHH-----c------------------CCccccCCCCCCCeEEEeecCCCCcc
Q 006375 539 --------------EEWGDPWKEEFYFYMK-----S------------------YSPVDNVKAQNYPHILVTAGLNDPRV 581 (648)
Q Consensus 539 --------------~~~g~~~~~~~~~~~~-----~------------------~sp~~~~~~~~~P~~li~~g~~D~~v 581 (648)
.....+.+...+..+. . .+....++++++| +|+++|++|..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vlvi~G~~D~~~ 250 (297)
T d1q0ra_ 172 AAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAELREVTVP-TLVIQAEHDPIA 250 (297)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGGGGGGGGCCSC-EEEEEETTCSSS
T ss_pred hHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhhhhhhhhhhccccchhhhhccCCc-eEEEEeCCCCCC
Confidence 0001122222111110 0 0112345667888 999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 582 MYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 582 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
|+..++++.+.+.. .++++++ ++||....+..+.+.+ .+.+||+.
T Consensus 251 ~~~~~~~~~~~~p~----~~~~~i~---~~gH~~~~e~p~~~~~--~i~~~l~~ 295 (297)
T d1q0ra_ 251 PAPHGKHLAGLIPT----ARLAEIP---GMGHALPSSVHGPLAE--VILAHTRS 295 (297)
T ss_dssp CTTHHHHHHHTSTT----EEEEEET---TCCSSCCGGGHHHHHH--HHHHHHHH
T ss_pred CHHHHHHHHHhCCC----CEEEEEC---CCCCcchhhCHHHHHH--HHHHHHHh
Confidence 99988887766542 3445554 8999876666654443 45666654
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.67 E-value=2.1e-15 Score=146.53 Aligned_cols=225 Identities=16% Similarity=0.169 Sum_probs=131.3
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 459 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 459 (648)
++++.||.+|... . . +..|.||++||..++. ..|...+..|+++||.|+++|.||.|.....
T Consensus 2 ~~~t~dG~~l~y~----~-~----G~g~~ivlvHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~------- 63 (274)
T d1a8qa_ 2 ICTTRDGVEIFYK----D-W----GQGRPVVFIHGWPLNG--DAWQDQLKAVVDAGYRGIAHDRRGHGHSTPV------- 63 (274)
T ss_dssp EEECTTSCEEEEE----E-E----CSSSEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred eEECcCCCEEEEE----E-E----CCCCeEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEEeCCCCcccccc-------
Confidence 4788999877643 1 1 2346788899965543 3466667788899999999999998865321
Q ss_pred cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHh-hCCCceeEEEecCCcccccccccCCCCCCCcc--
Q 006375 460 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN-MRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTA-- 536 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~-~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~-- 536 (648)
.....+.++...+..+++.- ..+++.++|+|+||.+++.+++ ..|++++++++..+..................
T Consensus 64 -~~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (274)
T d1a8qa_ 64 -WDGYDFDTFADDLNDLLTDL--DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVF 140 (274)
T ss_dssp -SSCCSHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHH
T ss_pred -cccccchhhHHHHHHHHHHh--hhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhhhhccchhhHHHH
Confidence 12244555554444444432 3478999999999998887554 45899999888775432221110000000000
Q ss_pred ----------------cc-cc-cC--CC---CCHH---H----------------HHHHHcCCccccCCCCCCCeEEEee
Q 006375 537 ----------------EW-EE-WG--DP---WKEE---F----------------YFYMKSYSPVDNVKAQNYPHILVTA 574 (648)
Q Consensus 537 ----------------~~-~~-~g--~~---~~~~---~----------------~~~~~~~sp~~~~~~~~~P~~li~~ 574 (648)
.. .. +. .+ .... . ...+...+....++++++| +|+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vlii~ 219 (274)
T d1a8qa_ 141 DALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIP-TLVVH 219 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSC-EEEEE
T ss_pred HHHHhhhhhhhHHHhhhhhhhhhhccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHHHhccce-eeeec
Confidence 00 00 00 01 0000 0 0111122233456778898 99999
Q ss_pred cCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC--chHHHHHHHHHHHHHHH
Q 006375 575 GLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS--GRFERLREAAFTYTFLM 634 (648)
Q Consensus 575 g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~ 634 (648)
|++|..+|+....+..+++. ...++++++ ++||+... ...+.+.+ .+.+||.
T Consensus 220 G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~---~~gH~~~~~~~~p~~~~~--~i~~FL~ 273 (274)
T d1a8qa_ 220 GDDDQVVPIDATGRKSAQII---PNAELKVYE---GSSHGIAMVPGDKEKFNR--DLLEFLN 273 (274)
T ss_dssp ETTCSSSCGGGTHHHHHHHS---TTCEEEEET---TCCTTTTTSTTHHHHHHH--HHHHHHT
T ss_pred cCCCCCcCHHHHHHHHHHhC---CCCEEEEEC---CCCCcccccccCHHHHHH--HHHHHHC
Confidence 99999999876655544442 134556665 88997543 33333332 4568875
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.9e-16 Score=148.92 Aligned_cols=195 Identities=15% Similarity=0.139 Sum_probs=120.8
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCC------CCCCChhhhhcccc-cCCCCcHhHHHH-----
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRG------GGELGRQWYENGKF-LKKKNTFTDFIA----- 471 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG------~g~~g~~~~~~~~~-~~~~~~~~D~~~----- 471 (648)
+..++||++||..+.. ..|......+...++.+++++-+. .+..+..|...... .......+++..
T Consensus 19 ~~~~~VI~lHG~G~~~--~~~~~~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~~~~~l 96 (229)
T d1fj2a_ 19 KATAAVIFLHGLGDTG--HGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAENI 96 (229)
T ss_dssp CCSEEEEEECCSSSCH--HHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCH--HHHHHHHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHHHHHHH
Confidence 3457999999943322 123333344445689999887431 12233445432111 111122222332
Q ss_pred --HHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHH
Q 006375 472 --CAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEF 549 (648)
Q Consensus 472 --~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 549 (648)
.++.+.+. .+|++||+++|+|+||.+++.++.++|+.|+++|+.++.+-...... .
T Consensus 97 ~~li~~~~~~-~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~~~---------------~------ 154 (229)
T d1fj2a_ 97 KALIDQEVKN-GIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFP---------------Q------ 154 (229)
T ss_dssp HHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGSC---------------S------
T ss_pred HHHhhhhhhc-CCCccceeeeecccchHHHHHHHHhhccccCcccccccccccccccc---------------c------
Confidence 23333333 48999999999999999999999999999999999988543211110 0
Q ss_pred HHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHH
Q 006375 550 YFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFT 629 (648)
Q Consensus 550 ~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 629 (648)
++... ...+.| +|++||++|++||+.++++.++.|++.....+ +.+...++.||... .+ ++.++
T Consensus 155 -------~~~~~-~~~~~P-vli~hG~~D~~vp~~~~~~~~~~L~~~~~~~~-v~~~~~~g~gH~i~---~~---~~~~~ 218 (229)
T d1fj2a_ 155 -------GPIGG-ANRDIS-ILQCHGDCDPLVPLMFGSLTVEKLKTLVNPAN-VTFKTYEGMMHSSC---QQ---EMMDV 218 (229)
T ss_dssp -------SCCCS-TTTTCC-EEEEEETTCSSSCHHHHHHHHHHHHHHSCGGG-EEEEEETTCCSSCC---HH---HHHHH
T ss_pred -------ccccc-ccccCc-eeEEEcCCCCeeCHHHHHHHHHHHHhcCCCCc-eEEEEeCCCCCccC---HH---HHHHH
Confidence 01111 112456 99999999999999999999999988543322 33444448899542 22 33456
Q ss_pred HHHHHHhcC
Q 006375 630 YTFLMRALS 638 (648)
Q Consensus 630 ~~fl~~~l~ 638 (648)
.+||.++|.
T Consensus 219 ~~wL~~~Lp 227 (229)
T d1fj2a_ 219 KQFIDKLLP 227 (229)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHhHCc
Confidence 899999984
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=5.6e-14 Score=136.25 Aligned_cols=240 Identities=9% Similarity=0.016 Sum_probs=160.4
Q ss_pred EEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCC
Q 006375 25 YYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGD 104 (648)
Q Consensus 25 y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~ 104 (648)
|..++.+++.-..+|.....+ ...+.|++... .+..|+|||||++|||+....+
T Consensus 8 y~~~~~~~~~~~~l~i~d~dG-----------------~~~~~l~~~~~--------~~~sP~wSPDGk~IAf~~~~~~- 61 (269)
T d2hqsa1 8 YVVQTNGGQFPYELRVSDYDG-----------------YNQFVVHRSPQ--------PLMSPAWSPDGSKLAYVTFESG- 61 (269)
T ss_dssp EEEECSSSSCCEEEEEEETTS-----------------CSCEEEEEESS--------CEEEEEECTTSSEEEEEECTTS-
T ss_pred EEEEeCCCCceEEEEEEcCCC-----------------CCcEEEecCCC--------ceeeeEECCCCCEEEEEEeecc-
Confidence 556666555444466655543 24556664322 1357999999999999988766
Q ss_pred eEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEe
Q 006375 105 EIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQA 182 (648)
Q Consensus 105 e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (648)
...+++++..++...... ..+....+.||||| .+++...... ...+........ ..... .........+.+
T Consensus 62 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~--~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~ 134 (269)
T d2hqsa1 62 -RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--SLNLYVMDLASG--QIRQV--TDGRSNNTEPTW 134 (269)
T ss_dssp -SCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTC--CEEEC--CCCSSCEEEEEE
T ss_pred -CcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCC--ccceeecccccc--cceee--eecccccccccc
Confidence 467899999998876443 33444568999999 8888765332 233444443332 11111 122233345678
Q ss_pred CCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeE
Q 006375 183 SESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVL 261 (648)
Q Consensus 183 s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 261 (648)
+++++.+++.+...+..+|++.+++++. ...++.... .....|+|+|+++++.++.. ....++..+... +..+ +
T Consensus 135 ~~~~~~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~~--~~~~i~~~~~~~-~~~~-~ 209 (269)
T d2hqsa1 135 FPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNG--GQQHIAKQDLAT-GGVQ-V 209 (269)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEECS--SCEEEEEEETTT-CCEE-E
T ss_pred ccccccceecccccCCceEeeeeccccc-ceeeecccccccccccccccceeEEEeecC--CceeeeEeeccc-ccce-E
Confidence 9999999998887778899999999887 555544322 23356999999999998863 457888888875 3333 3
Q ss_pred ecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcc
Q 006375 262 IPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPL 304 (648)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~ 304 (648)
+..........|+++++.|++....++...|++++++ |+..
T Consensus 210 ~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d--g~~~ 250 (269)
T d2hqsa1 210 LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD--GRFK 250 (269)
T ss_dssp CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT--SCCE
T ss_pred eecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC--CCCE
Confidence 3333333345677778899999888888999999998 5543
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1.8e-16 Score=154.27 Aligned_cols=209 Identities=11% Similarity=0.069 Sum_probs=140.6
Q ss_pred cceEEEEEeCCCC-eEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChh
Q 006375 374 YFTERKWASASDG-TQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQ 452 (648)
Q Consensus 374 ~~~~~~~~~s~~g-~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~ 452 (648)
+..+.+.+.+.|| .++.++++.|++. .+++++|+|+++||+....... .....+....+|++|+++++++...++..
T Consensus 11 ~~~~~~~~~s~dg~~~~~~~v~~P~~~-~~~~~yPvi~~lhG~~~~~~~~-~~~~~~~~~~~~~~vV~v~~~~~~~~~~~ 88 (265)
T d2gzsa1 11 YHFSATSFDSVDGTRHYRVWTAVPNTT-APASGYPILYMLDGNAVMDRLD-DELLKQLSEKTPPVIVAVGYQTNLPFDLN 88 (265)
T ss_dssp EEEEEEEEECTTSSCEEEEEEEEESSC-CCTTCEEEEEESSHHHHHHHCC-HHHHHHHTTSCCCEEEEEEESSSSSCCHH
T ss_pred ceeEEEEEEcCCCCEEEEEEEEcCCCC-CCCCCceEEEEecCcchhhhHH-HHHHHHHHhcCCCeEEEecCCCCCcCccc
Confidence 4568889999998 4799999999987 7778899999999964322111 11122344557999999999998877654
Q ss_pred hhhcccc--------c-------CCCC---cHhHH--HHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeE
Q 006375 453 WYENGKF--------L-------KKKN---TFTDF--IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKA 512 (648)
Q Consensus 453 ~~~~~~~--------~-------~~~~---~~~D~--~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a 512 (648)
.+..... . .... .+.++ ..++.++.++..+|+.+++|+|+|+||++++.++.+ ++.|.+
T Consensus 89 ~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~-~~~f~~ 167 (265)
T d2gzsa1 89 SRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRS 167 (265)
T ss_dssp HHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSE
T ss_pred ccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHc-CcccCE
Confidence 3211100 0 0001 12222 234566666677899999999999999999988876 557888
Q ss_pred EEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCCCCCCCeEEEeecCC--------CCccCCc
Q 006375 513 AVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLN--------DPRVMYS 584 (648)
Q Consensus 513 ~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~P~~li~~g~~--------D~~v~~~ 584 (648)
+++.+|...+. ++... ...+++........| +++.+|+. |.++++.
T Consensus 168 ~~a~s~~~~~~----------------------~~~~~---~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~d~~~~~~ 221 (265)
T d2gzsa1 168 YYSASPSLGRG----------------------YDALL---SRVTAVEPLQFCTKH-LAIMEGSATQGDNRETHAVGVLS 221 (265)
T ss_dssp EEEESGGGSTT----------------------HHHHH---HHHHTSCTTTTTTCE-EEEEECCC-----------CHHH
T ss_pred EEEECCccccc----------------------chhhh---hccccccccccCCCc-EEEEcCCcccccccccccchhHH
Confidence 88888754321 11112 222344444444444 88888877 7788899
Q ss_pred hHHHHHHHHHhcCCCCCeEEEEecCCCCcc
Q 006375 585 EPAKFVAKLREMKTDDNILLFKCELGAGHF 614 (648)
Q Consensus 585 ~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~ 614 (648)
++++++++|+++|+++++.+|+ +++|+
T Consensus 222 ~~~~l~~~L~~~g~~~~~~~~p---G~~Hg 248 (265)
T d2gzsa1 222 KIHTTLTILKDKGVNAVFWDFP---NLGHG 248 (265)
T ss_dssp HHHHHHHHHHHTTCCEEEEECT---TCCHH
T ss_pred HHHHHHHHHHHCCCCEEEEEcC---CCCcc
Confidence 9999999999999998777665 88995
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.63 E-value=4.4e-16 Score=147.40 Aligned_cols=212 Identities=16% Similarity=0.147 Sum_probs=123.5
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.+.||++||..++. ..|...+..|+++||.|+++|+||.|+....... ........+...++.++... +.+
T Consensus 11 ~~~vvliHG~~~~~--~~~~~l~~~L~~~G~~v~~~D~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~ 81 (242)
T d1tqha_ 11 ERAVLLLHGFTGNS--ADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVH----TGPDDWWQDVMNGYEFLKNK---GYE 81 (242)
T ss_dssp SCEEEEECCTTCCT--HHHHHHHHHHHHTTCEEEECCCTTSSSCHHHHTT----CCHHHHHHHHHHHHHHHHHH---TCC
T ss_pred CCeEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEEeCCCCccccccccc----cchhHHHHHHHHHHhhhhhc---ccC
Confidence 46788899965543 3466777899999999999999999866443221 11112234455555555544 347
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCC----------CCCcc----cccccCCC--CCHHH
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTI----------PLTTA----EWEEWGDP--WKEEF 549 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~----------~~~~~----~~~~~g~~--~~~~~ 549 (648)
++.++|+|+||.++..++.++|.....+++................ ..... ....+... .....
T Consensus 82 ~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (242)
T d1tqha_ 82 KIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKA 161 (242)
T ss_dssp CEEEEEETHHHHHHHHHHTTSCCSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTHHH
T ss_pred ceEEEEcchHHHHhhhhcccCcccccccccccccccchhHHHHHHHHHHHHHhhhccchhhhHHHHHhhhhhhccchhhc
Confidence 8999999999999999999998754444333222211100000000 00000 00000000 11100
Q ss_pred HHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCc-hHHHHHHHHH
Q 006375 550 YFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSG-RFERLREAAF 628 (648)
Q Consensus 550 ~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~~~ 628 (648)
. ..........+..+..| +|+++|++|..||+..++++++.++.. ..++++++ ++||....+ ..+.+.+ .
T Consensus 162 ~-~~~~~~~~~~~~~~~~p-~lii~g~~D~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~gH~~~~~~~~~~~~~--~ 232 (242)
T d1tqha_ 162 L-QELIADVRDHLDLIYAP-TFVVQARHDEMINPDSANIIYNEIESP--VKQIKWYE---QSGHVITLDQEKDQLHE--D 232 (242)
T ss_dssp H-HHHHHHHHHTGGGCCSC-EEEEEETTCSSSCTTHHHHHHHHCCCS--SEEEEEET---TCCSSGGGSTTHHHHHH--H
T ss_pred c-cccccccccccceeccc-cceeecccCCccCHHHHHHHHHHcCCC--CcEEEEEC---CCCCcCccccCHHHHHH--H
Confidence 0 01111233456667787 999999999999999999998877532 33455664 899976433 2333332 5
Q ss_pred HHHHHHH
Q 006375 629 TYTFLMR 635 (648)
Q Consensus 629 ~~~fl~~ 635 (648)
+.+||.+
T Consensus 233 i~~Fl~~ 239 (242)
T d1tqha_ 233 IYAFLES 239 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6788864
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.63 E-value=8.8e-16 Score=143.42 Aligned_cols=182 Identities=18% Similarity=0.142 Sum_probs=121.2
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccC--C---CCcHhHHHHHHHHHHH
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK--K---KNTFTDFIACAEYLIK 478 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~--~---~~~~~D~~~~~~~l~~ 478 (648)
++.|+||++||..+... .|......|. .++.+++++.+.....+..|........ . ....+++.+.++.+.+
T Consensus 21 ~~~p~vv~lHG~g~~~~--~~~~l~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 97 (209)
T d3b5ea1 21 ESRECLFLLHGSGVDET--TLVPLARRIA-PTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEAAK 97 (209)
T ss_dssp SCCCEEEEECCTTBCTT--TTHHHHHHHC-TTSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHH--HHHHHHHHhc-cCcEEEeeccCcCcccCccccccCCccccchhhHHHHHHHHHHHHHHHHH
Confidence 45799999999655432 3555455555 4788888876533222333321111000 0 0124556667777777
Q ss_pred cCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCc
Q 006375 479 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSP 558 (648)
Q Consensus 479 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp 558 (648)
+..+|++||+++|+|+||.+++.++.++|++|+++|+.+|...... .+
T Consensus 98 ~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~~--------------------------------~~ 145 (209)
T d3b5ea1 98 RHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH--------------------------------VP 145 (209)
T ss_dssp HHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS--------------------------------CC
T ss_pred HhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCcccccc--------------------------------cc
Confidence 7778999999999999999999999999999999999988532110 01
Q ss_pred cccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 559 VDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 559 ~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
..+ ..+.| ++++||++|++++ ..+.++.++|++.|.+.+..+++ + ||... .+ ++....+||.
T Consensus 146 ~~~--~~~~p-~~~~~G~~D~~~~-~~~~~~~~~l~~~G~~v~~~~~~---g-gH~i~---~~---~~~~~~~wl~ 207 (209)
T d3b5ea1 146 ATD--LAGIR-TLIIAGAADETYG-PFVPALVTLLSRHGAEVDARIIP---S-GHDIG---DP---DAAIVRQWLA 207 (209)
T ss_dssp CCC--CTTCE-EEEEEETTCTTTG-GGHHHHHHHHHHTTCEEEEEEES---C-CSCCC---HH---HHHHHHHHHH
T ss_pred ccc--cccch-heeeeccCCCccC-HHHHHHHHHHHHCCCCeEEEEEC---C-CCCCC---HH---HHHHHHHHhC
Confidence 111 12345 9999999999987 67889999999998876655553 4 79653 22 2234457774
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.63 E-value=3.2e-16 Score=153.42 Aligned_cols=122 Identities=20% Similarity=0.134 Sum_probs=83.9
Q ss_pred CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCC
Q 006375 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 462 (648)
Q Consensus 383 s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 462 (648)
..||.+|..... +. ++..|+||++||+++.... |......++++||.|+++|.||.|..... ...
T Consensus 8 ~~~g~~i~y~~~---g~---~~~~~~iv~lHG~~g~~~~--~~~~~~~~~~~~~~vi~~D~~G~G~S~~~-------~~~ 72 (290)
T d1mtza_ 8 KVNGIYIYYKLC---KA---PEEKAKLMTMHGGPGMSHD--YLLSLRDMTKEGITVLFYDQFGCGRSEEP-------DQS 72 (290)
T ss_dssp EETTEEEEEEEE---CC---SSCSEEEEEECCTTTCCSG--GGGGGGGGGGGTEEEEEECCTTSTTSCCC-------CGG
T ss_pred EECCEEEEEEEc---CC---CCCCCeEEEECCCCCchHH--HHHHHHHHHHCCCEEEEEeCCCCcccccc-------ccc
Confidence 358887864422 11 1335889999998765443 44445567788999999999998865321 111
Q ss_pred CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 463 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 463 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
..+++++.+.+..++++- ...+++.++|+||||.+++.++.++|++++++|+..++.
T Consensus 73 ~~~~~~~~~~l~~ll~~l-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 129 (290)
T d1mtza_ 73 KFTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLS 129 (290)
T ss_dssp GCSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCS
T ss_pred cccccchhhhhhhhhccc-ccccccceecccccchhhhhhhhcChhhheeeeeccccc
Confidence 234455555455444331 123689999999999999999999999999999888764
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.63 E-value=2.4e-15 Score=146.08 Aligned_cols=227 Identities=19% Similarity=0.195 Sum_probs=132.5
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 459 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 459 (648)
++++.||.+|.....-| ...|+||++||..+.. ..|...+..|+++||.|+++|.||.|.....
T Consensus 2 ~i~~~dG~~l~y~~~G~-------~~~~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~s~~~------- 65 (275)
T d1a88a_ 2 TVTTSDGTNIFYKDWGP-------RDGLPVVFHHGWPLSA--DDWDNQMLFFLSHGYRVIAHDRRGHGRSDQP------- 65 (275)
T ss_dssp EEECTTSCEEEEEEESC-------TTSCEEEEECCTTCCG--GGGHHHHHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred EEEecCCCEEEEEEecC-------CCCCeEEEECCCCCCH--HHHHHHHHHHHhCCCEEEEEecccccccccc-------
Confidence 46789999887653322 1246789999976543 3466667788899999999999998865321
Q ss_pred cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeCh-hHHHHHHHHhhCCCceeEEEecCCccccccccc--CCCCCCCc-
Q 006375 460 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSA-GGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML--DPTIPLTT- 535 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~-GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~--~~~~~~~~- 535 (648)
....+++++.+.+..+++. .+.+++.++|+|+ ||.++..++.++|++++++|+..+......... ....+...
T Consensus 66 -~~~~~~~~~~~~~~~~l~~--l~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 142 (275)
T d1a88a_ 66 -STGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVF 142 (275)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCHHHH
T ss_pred -ccccccccccccccccccc--ccccccccccccccccchhhcccccCcchhhhhhhhcccccccccchhhhhhhhhhhh
Confidence 1223455655555555543 2346788899997 555666677889999999998775432111100 00000000
Q ss_pred ------------c--------cccccCC--C-CCHHHH-------------------HHHHcCCccccCCCCCCCeEEEe
Q 006375 536 ------------A--------EWEEWGD--P-WKEEFY-------------------FYMKSYSPVDNVKAQNYPHILVT 573 (648)
Q Consensus 536 ------------~--------~~~~~g~--~-~~~~~~-------------------~~~~~~sp~~~~~~~~~P~~li~ 573 (648)
. .+..+.. . ...... ..+........+.++++| +|++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~l~i 221 (275)
T d1a88a_ 143 DEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVP-VLVA 221 (275)
T ss_dssp HHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSC-EEEE
T ss_pred hhhhhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhHHHHhhccc-ccee
Confidence 0 0000000 0 011110 011112222345567888 9999
Q ss_pred ecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 574 AGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 574 ~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
+|++|..+|+.+..+..+++.. ..+.++++ ++||+...++++.+.+ .+.+||+
T Consensus 222 ~G~~D~~~~~~~~~~~~~~~~~---~~~~~~i~---~~gH~~~~e~p~~~~~--~i~~Fl~ 274 (275)
T d1a88a_ 222 HGTDDQVVPYADAAPKSAELLA---NATLKSYE---GLPHGMLSTHPEVLNP--DLLAFVK 274 (275)
T ss_dssp EETTCSSSCSTTTHHHHHHHST---TEEEEEET---TCCTTHHHHCHHHHHH--HHHHHHH
T ss_pred ecCCCCCcCHHHHHHHHHHhCC---CCEEEEEC---CCCCchHHhCHHHHHH--HHHHHHc
Confidence 9999999998776665554421 23455554 8899765444443332 4677775
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.62 E-value=1.8e-15 Score=147.98 Aligned_cols=209 Identities=12% Similarity=0.128 Sum_probs=123.3
Q ss_pred CcEEEEecCCCCCCCCCC-CchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPA-FNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~-~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
.|+||++||.......+. +......++++||.|+++|.||.|...... .......+..+.+..++++ .+.
T Consensus 30 G~~ivllHG~~~~~~~~~~~~~~l~~~~~~g~~v~~~D~~G~G~S~~~~-------~~~~~~~~~~~~i~~li~~--l~~ 100 (283)
T d2rhwa1 30 GETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVV-------MDEQRGLVNARAVKGLMDA--LDI 100 (283)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHHHTTCEEEEECCTTSTTSCCCC-------CSSCHHHHHHHHHHHHHHH--HTC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHHHCCCEEEEEeCCCCccccccc-------ccccccchhhhhccccccc--ccc
Confidence 478899999655443321 122234677899999999999988653221 1112223333334333333 233
Q ss_pred CeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCc-------------ccc----cccC-CC--
Q 006375 485 EKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTT-------------AEW----EEWG-DP-- 544 (648)
Q Consensus 485 ~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~-------------~~~----~~~g-~~-- 544 (648)
+++.++|+|+||.+++.++.++|+.++++|+..|..-..... . ..+... ..+ ..+. .+
T Consensus 101 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (283)
T d2rhwa1 101 DRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMF-A-PMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSL 178 (283)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSS-S-CSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGG
T ss_pred cccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchh-h-hhhHHHHHHHHHHhhhhhhhhHHHHHHHhhccccc
Confidence 689999999999999999999999999999887643111110 0 000000 000 0000 00
Q ss_pred CCHHH----HHHH-------------------HcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCC
Q 006375 545 WKEEF----YFYM-------------------KSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN 601 (648)
Q Consensus 545 ~~~~~----~~~~-------------------~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~ 601 (648)
..++. +..+ ..++....+.++++| +|+++|++|..+|+..+.++.+.+.. .+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~~~~~~----~~ 253 (283)
T d2rhwa1 179 ITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAK-TFITWGRDDRFVPLDHGLKLLWNIDD----AR 253 (283)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSC-EEEEEETTCSSSCTHHHHHHHHHSSS----EE
T ss_pred CcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhCCCC-EEEEEeCCCCCcCHHHHHHHHHhCCC----CE
Confidence 11110 0000 012234456667888 99999999999999999888777642 34
Q ss_pred eEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 602 ILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 602 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
+++++ ++||+...++++.+.+ .+.+||++
T Consensus 254 ~~~i~---~~gH~~~~e~p~~~~~--~i~~FLk~ 282 (283)
T d2rhwa1 254 LHVFS---KCGHWAQWEHADEFNR--LVIDFLRH 282 (283)
T ss_dssp EEEES---SCCSCHHHHTHHHHHH--HHHHHHHH
T ss_pred EEEEC---CCCCchHHhCHHHHHH--HHHHHHhC
Confidence 55564 8899765444443332 45788875
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.61 E-value=9.9e-15 Score=141.47 Aligned_cols=225 Identities=17% Similarity=0.196 Sum_probs=134.6
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 459 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 459 (648)
++++.||.+|... . . |+.|.||++||..+... .|...+..|+++||.|+++|.||.|.....
T Consensus 2 ~f~~~dG~~i~y~----~-~----G~g~pvvllHG~~~~~~--~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~------- 63 (273)
T d1a8sa_ 2 TFTTRDGTQIYYK----D-W----GSGQPIVFSHGWPLNAD--SWESQMIFLAAQGYRVIAHDRRGHGRSSQP------- 63 (273)
T ss_dssp EEECTTSCEEEEE----E-E----SCSSEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred EEEeeCCcEEEEE----E-E----CCCCeEEEECCCCCCHH--HHHHHHHHHHhCCCEEEEEechhcCccccc-------
Confidence 4678899887543 1 1 23466888999765433 366767788899999999999998865321
Q ss_pred cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHH-HHhhCCCceeEEEecCCccccccccc-CC-CCCCCcc
Q 006375 460 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGA-VLNMRPDLFKAAVAAVPFVDVLTTML-DP-TIPLTTA 536 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~-~~~~~p~~~~a~v~~~~~~d~~~~~~-~~-~~~~~~~ 536 (648)
....+++++.+.+..+++. .+..+..++|+|+||.+++. ++.++|++++++++..+......... .. .......
T Consensus 64 -~~~~~~~~~~~~~~~~l~~--l~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 140 (273)
T d1a8sa_ 64 -WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVF 140 (273)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHH
T ss_pred -cccccccchHHHHHHHHHh--cCccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccccccccccchhhhh
Confidence 1124556666666655554 23467889999998866554 55567999998887765432211100 00 0000000
Q ss_pred ----------------cc---ccc--CCC---CCHHH-------------------HHHHHcCCccccCCCCCCCeEEEe
Q 006375 537 ----------------EW---EEW--GDP---WKEEF-------------------YFYMKSYSPVDNVKAQNYPHILVT 573 (648)
Q Consensus 537 ----------------~~---~~~--g~~---~~~~~-------------------~~~~~~~sp~~~~~~~~~P~~li~ 573 (648)
.+ ..+ ..+ ..... ...+...+....++++++| +|++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P-vlii 219 (273)
T d1a8sa_ 141 DGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVP-TLVV 219 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSC-EEEE
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhHHHHhhccc-eEEE
Confidence 00 000 011 11111 1112223344556677898 9999
Q ss_pred ecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 574 AGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 574 ~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
+|++|..+|...+.++.+++.. ..++++++ ++||+....+++.+.+ .+.+||+
T Consensus 220 ~g~~D~~~~~~~~~~~~~~~~~---~~~~~~i~---~~gH~~~~e~p~~~~~--~i~~Fl~ 272 (273)
T d1a8sa_ 220 HGDADQVVPIEASGIASAALVK---GSTLKIYS---GAPHGLTDTHKDQLNA--DLLAFIK 272 (273)
T ss_dssp EETTCSSSCSTTTHHHHHHHST---TCEEEEET---TCCSCHHHHTHHHHHH--HHHHHHH
T ss_pred ecCCCCCCCHHHHHHHHHHhCC---CCEEEEEC---CCCCchHHhCHHHHHH--HHHHHcC
Confidence 9999999999888887766532 34455564 8999765544444333 4577774
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.61 E-value=1e-15 Score=140.06 Aligned_cols=162 Identities=15% Similarity=0.143 Sum_probs=105.8
Q ss_pred EEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeE
Q 006375 408 LLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKL 487 (648)
Q Consensus 408 ~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i 487 (648)
.||++||..++.....+......|+++||.|+++|++|+|.. ..+|....++.+.. ....++
T Consensus 3 ~V~~vHG~~~~~~~~~~~~l~~~L~~~G~~v~~~d~p~~~~~---------------~~~~~~~~l~~~~~---~~~~~~ 64 (186)
T d1uxoa_ 3 QVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQP---------------RLEDWLDTLSLYQH---TLHENT 64 (186)
T ss_dssp EEEEECCTTCCTTSTTHHHHHHHHHHTTCEEEEECCSCTTSC---------------CHHHHHHHHHTTGG---GCCTTE
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHhCCCEEEEeccCCCCcc---------------hHHHHHHHHHHHHh---ccCCCc
Confidence 589999965544433355667889999999999999987642 23555555554443 445899
Q ss_pred EEEeeChhHHHHHHHHhhCCCc--eeEEEecCCcccccccccCCCCCCCccccccc-CCCCCHHHHHHHHcCCccccCCC
Q 006375 488 CIEGRSAGGLLIGAVLNMRPDL--FKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEW-GDPWKEEFYFYMKSYSPVDNVKA 564 (648)
Q Consensus 488 ~i~G~S~GG~l~~~~~~~~p~~--~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~sp~~~~~~ 564 (648)
.++|+||||++++.++.++|+. +.++++.+|+....... .....+ ..+..... ..+
T Consensus 65 ~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~------------~~~ 123 (186)
T d1uxoa_ 65 YLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTL---------QMLDEFTQGSFDHQK------------IIE 123 (186)
T ss_dssp EEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTC---------GGGGGGTCSCCCHHH------------HHH
T ss_pred EEEEechhhHHHHHHHHhCCccceeeEEeecccccccchhh---------hhhhhhhcccccccc------------ccc
Confidence 9999999999999999998864 34455555543321110 000111 11111111 111
Q ss_pred CCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC
Q 006375 565 QNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS 617 (648)
Q Consensus 565 ~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~ 617 (648)
...| +|++||++|++||+.+++++++++. .++++++ ++||+...
T Consensus 124 ~~~p-~lvi~g~~D~~vp~~~~~~l~~~~~-----~~~~~~~---~~gH~~~~ 167 (186)
T d1uxoa_ 124 SAKH-RAVIASKDDQIVPFSFSKDLAQQID-----AALYEVQ---HGGHFLED 167 (186)
T ss_dssp HEEE-EEEEEETTCSSSCHHHHHHHHHHTT-----CEEEEET---TCTTSCGG
T ss_pred CCCC-EEEEecCCCCCCCHHHHHHHHHHcC-----CEEEEeC---CCCCcCcc
Confidence 2344 9999999999999999999988773 3556665 89997543
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.60 E-value=5e-15 Score=143.63 Aligned_cols=224 Identities=14% Similarity=0.124 Sum_probs=133.4
Q ss_pred CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC-CCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccC
Q 006375 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLK 461 (648)
Q Consensus 383 s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~ 461 (648)
..+|.++... +. |..|.||++||..+..... .|......| ++||.|+++|.||.|..... ..
T Consensus 9 ~~~G~~~~Y~-----~~----G~G~pvvllHG~~~~~~~~~~~~~~~~~l-~~~~~vi~~Dl~G~G~S~~~-------~~ 71 (271)
T d1uk8a_ 9 LAAGVLTNYH-----DV----GEGQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGFGFTDRP-------EN 71 (271)
T ss_dssp EETTEEEEEE-----EE----CCSSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCCC-------TT
T ss_pred EECCEEEEEE-----EE----eeCCeEEEECCCCCCccHHHHHHHHHHHH-hCCCEEEEEeCCCCCCcccc-------cc
Confidence 3578777643 11 2336788899965443221 133333444 57999999999998875432 12
Q ss_pred CCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc-----cCCCCCCCcc
Q 006375 462 KKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-----LDPTIPLTTA 536 (648)
Q Consensus 462 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~-----~~~~~~~~~~ 536 (648)
....+++..+.+..+.+.- +.+++.++|+|+||.+++.++.++|+.++++|+..|........ .....+....
T Consensus 72 ~~~~~~~~~~~~~~~~~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (271)
T d1uk8a_ 72 YNYSKDSWVDHIIGIMDAL--EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIEN 149 (271)
T ss_dssp CCCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHHH
T ss_pred ccccccccchhhhhhhhhh--cCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhhccchhHH
Confidence 2245677777777777653 34689999999999999999999999999999877643211100 0000000000
Q ss_pred --c-ccccCC-C--CCHH-------------HHHHHH-------------cCCccccCCCCCCCeEEEeecCCCCccCCc
Q 006375 537 --E-WEEWGD-P--WKEE-------------FYFYMK-------------SYSPVDNVKAQNYPHILVTAGLNDPRVMYS 584 (648)
Q Consensus 537 --~-~~~~g~-~--~~~~-------------~~~~~~-------------~~sp~~~~~~~~~P~~li~~g~~D~~v~~~ 584 (648)
. ...+.. + .... ..+.+. .......++++++| +|+++|++|..+|+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~ 228 (271)
T d1uk8a_ 150 MRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNE-TLIIHGREDQVVPLS 228 (271)
T ss_dssp HHHHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSC-EEEEEETTCSSSCHH
T ss_pred HHHHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccc-eeEEecCCCCCcCHH
Confidence 0 000000 0 0000 000011 11223446677888 999999999999988
Q ss_pred hHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 585 EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 585 ~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
.+.++.+.+.. .++++++ ++||+....+++.+.+ .+.+||.+
T Consensus 229 ~~~~~~~~~~~----~~~~~~~---~~gH~~~~e~p~~~~~--~i~~Fl~e 270 (271)
T d1uk8a_ 229 SSLRLGELIDR----AQLHVFG---RCGHWTQIEQTDRFNR--LVVEFFNE 270 (271)
T ss_dssp HHHHHHHHCTT----EEEEEES---SCCSCHHHHTHHHHHH--HHHHHHHT
T ss_pred HHHHHHHhCCC----CEEEEEC---CCCCchHHHCHHHHHH--HHHHHHhc
Confidence 88887766642 3455564 8899765444443332 56788865
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.60 E-value=5.9e-15 Score=142.89 Aligned_cols=223 Identities=18% Similarity=0.193 Sum_probs=130.4
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCC-CCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCC
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 462 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 462 (648)
.||.++... .. |+.|.||++||..+.... ..|......| .+||.|+++|.||.|.... ...
T Consensus 9 ~dg~~l~y~---~~------G~g~~vvllHG~~~~~~~~~~~~~~~~~l-~~~~~v~~~D~~G~G~S~~--------~~~ 70 (268)
T d1j1ia_ 9 AGGVETRYL---EA------GKGQPVILIHGGGAGAESEGNWRNVIPIL-ARHYRVIAMDMLGFGKTAK--------PDI 70 (268)
T ss_dssp ETTEEEEEE---EE------CCSSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCC--------CSS
T ss_pred ECCEEEEEE---EE------cCCCeEEEECCCCCCccHHHHHHHHHHHH-hcCCEEEEEcccccccccC--------Ccc
Confidence 488887643 12 234678899997554322 1244444444 5799999999999886532 122
Q ss_pred CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc--cCCCCC--CCcccc
Q 006375 463 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM--LDPTIP--LTTAEW 538 (648)
Q Consensus 463 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~--~~~~~~--~~~~~~ 538 (648)
...++++...+..+++.-.. ..++.++|+|+||.+++.++.++|++++++|+..|..-..... ...... ......
T Consensus 71 ~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (268)
T d1j1ia_ 71 EYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGM 149 (268)
T ss_dssp CCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHH
T ss_pred ccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhhhhhhhhh
Confidence 24456666655555543222 2579999999999999999999999999999887642211110 000000 000000
Q ss_pred ----cc-cCCC--CCHHH--------------------HHHHHc----CCccccCCCCCCCeEEEeecCCCCccCCchHH
Q 006375 539 ----EE-WGDP--WKEEF--------------------YFYMKS----YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPA 587 (648)
Q Consensus 539 ----~~-~g~~--~~~~~--------------------~~~~~~----~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~ 587 (648)
.. ..+. ...+. ...+.. ......++++++| +|+++|++|..+|++.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~l~i~G~~D~~~~~~~~~ 228 (268)
T d1j1ia_ 150 VHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVP-TLVVQGKDDKVVPVETAY 228 (268)
T ss_dssp HHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSC-EEEEEETTCSSSCHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCC-EEEEEeCCCCCCCHHHHH
Confidence 00 0000 11100 000111 1112345677888 999999999999988887
Q ss_pred HHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 588 KFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 588 ~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
++.+.+.. .++++++ ++||+...+.++.+.+ .+.+||.+
T Consensus 229 ~~~~~~~~----~~~~~~~---~~gH~~~~e~p~~~~~--~i~~FL~~ 267 (268)
T d1j1ia_ 229 KFLDLIDD----SWGYIIP---HCGHWAMIEHPEDFAN--ATLSFLSL 267 (268)
T ss_dssp HHHHHCTT----EEEEEES---SCCSCHHHHSHHHHHH--HHHHHHHH
T ss_pred HHHHhCCC----CEEEEEC---CCCCchHHhCHHHHHH--HHHHHHcC
Confidence 77776642 3455664 8999765444444433 46788865
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.60 E-value=6.3e-15 Score=142.53 Aligned_cols=225 Identities=20% Similarity=0.199 Sum_probs=135.9
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKF 459 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~ 459 (648)
+|.+.||.+|... .. |..|.||++||..+.. ..|...+..|+++||.|+++|.||.|.....
T Consensus 2 ~f~~~dG~~l~y~-----~~----G~g~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~------- 63 (271)
T d1va4a_ 2 TFVAKDGTQIYFK-----DW----GSGKPVLFSHGWLLDA--DMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP------- 63 (271)
T ss_dssp EEECTTSCEEEEE-----EE----SSSSEEEEECCTTCCG--GGGHHHHHHHHTTTCEEEEECCTTSTTSCCC-------
T ss_pred EEEeECCeEEEEE-----EE----cCCCeEEEECCCCCCH--HHHHHHHHHHHhCCCEEEEEecccccccccc-------
Confidence 3567899888643 11 2346788899976543 3366667788889999999999998865321
Q ss_pred cCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHH-HHHhhCCCceeEEEecCCcccccccccC--CCCCCCc-
Q 006375 460 LKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIG-AVLNMRPDLFKAAVAAVPFVDVLTTMLD--PTIPLTT- 535 (648)
Q Consensus 460 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~-~~~~~~p~~~~a~v~~~~~~d~~~~~~~--~~~~~~~- 535 (648)
.....++++...+..+... ++.+++.++|+|+||.+++ .++.++|++++++++..+.......... .......
T Consensus 64 -~~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 140 (271)
T d1va4a_ 64 -WTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVF 140 (271)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTSBCHHHH
T ss_pred -ccccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecccccccccchhhhhhhhhhHH
Confidence 2224566766666666554 3457899999999887665 5566789999999988765432211100 0000000
Q ss_pred c---------------cc--cccCC----CCCHH-------------------HHHHHHcCCccccCCCCCCCeEEEeec
Q 006375 536 A---------------EW--EEWGD----PWKEE-------------------FYFYMKSYSPVDNVKAQNYPHILVTAG 575 (648)
Q Consensus 536 ~---------------~~--~~~g~----~~~~~-------------------~~~~~~~~sp~~~~~~~~~P~~li~~g 575 (648)
. .+ ..++. ..... ....+...+....+.++++| +|+++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-vl~i~g 219 (271)
T d1va4a_ 141 ARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVP-TLVIHG 219 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSC-EEEEEE
T ss_pred HHHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhhhhcccc-eeeccc
Confidence 0 00 00010 00000 01111222233445567888 999999
Q ss_pred CCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 576 LNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 576 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
++|..+|+..+.++.+++.. ..++++++ ++||....++++.+.+ .+.+||+
T Consensus 220 ~~D~~~~~~~~~~~~~~~~~---~~~~~~~~---~~gH~~~~e~p~~~~~--~i~~fL~ 270 (271)
T d1va4a_ 220 DGDQIVPFETTGKVAAELIK---GAELKVYK---DAPHGFAVTHAQQLNE--DLLAFLK 270 (271)
T ss_dssp TTCSSSCGGGTHHHHHHHST---TCEEEEET---TCCTTHHHHTHHHHHH--HHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHhCC---CCEEEEEC---CCCCchHHhCHHHHHH--HHHHHHC
Confidence 99999999888888776632 34556664 8999765444443332 4567775
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=5.7e-15 Score=147.20 Aligned_cols=123 Identities=14% Similarity=0.171 Sum_probs=90.1
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
...+++..||.+|... .. |..|+||++||.++... .|...+..|+++||.|+++|.||.|......
T Consensus 12 ~~~~v~~~~g~~i~y~-----~~----G~gp~vlllHG~~~~~~--~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~--- 77 (322)
T d1zd3a2 12 SHGYVTVKPRVRLHFV-----EL----GSGPAVCLCHGFPESWY--SWRYQIPALAQAGYRVLAMDMKGYGESSAPP--- 77 (322)
T ss_dssp EEEEEEEETTEEEEEE-----EE----CCSSEEEEECCTTCCGG--GGTTHHHHHHHTTCEEEEEECTTSTTSCCCS---
T ss_pred ceeEEEECCCCEEEEE-----EE----cCCCeEEEECCCCCCHH--HHHHHHHHHHHCCCEEEEecccccccccccc---
Confidence 3445666789887654 11 23489999999765433 4666778899999999999999987543211
Q ss_pred ccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 457 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
......++++...+..++++ .+.+++.++|+|+||.++..++.++|++++++|+..+
T Consensus 78 ---~~~~~~~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 134 (322)
T d1zd3a2 78 ---EIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 134 (322)
T ss_dssp ---CGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred ---ccccccccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcc
Confidence 11123567777777776665 3447899999999999999999999999999987754
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.58 E-value=8.5e-15 Score=139.77 Aligned_cols=209 Identities=13% Similarity=0.096 Sum_probs=127.0
Q ss_pred cEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCe
Q 006375 407 PLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEK 486 (648)
Q Consensus 407 P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~ 486 (648)
|.||++||..+... .|...+..|+++||.|+++|.||.|..... ......+++....+..+...... ..+
T Consensus 3 ~~vvllHG~~~~~~--~w~~~~~~L~~~g~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~ 72 (258)
T d1xkla_ 3 KHFVLVHGACHGGW--SWYKLKPLLEAAGHKVTALDLAASGTDLRK-------IEELRTLYDYTLPLMELMESLSA-DEK 72 (258)
T ss_dssp CEEEEECCTTCCGG--GGTTHHHHHHHTTCEEEECCCTTSTTCCCC-------GGGCCSHHHHHHHHHHHHHTSCS-SSC
T ss_pred CcEEEECCCCCCHH--HHHHHHHHHHhCCCEEEEecCCCCCCCCCC-------CCCCcchHHHHHHHhhhhhcccc-ccc
Confidence 57888999765443 467778889999999999999999875432 11123455555555554444322 368
Q ss_pred EEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccccc----------CCCCCCCcccc----------------cc
Q 006375 487 LCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTML----------DPTIPLTTAEW----------------EE 540 (648)
Q Consensus 487 i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~----------~~~~~~~~~~~----------------~~ 540 (648)
+.++|+|+||.+++.++.++|++++.+|+..+..-...... ........... .+
T Consensus 73 ~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T d1xkla_ 73 VILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGPK 152 (258)
T ss_dssp EEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCHH
T ss_pred ccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhcccccccHH
Confidence 89999999999999999999999999998876532111000 00000000000 00
Q ss_pred -----cCCCCCHHHH--------------HHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCC
Q 006375 541 -----WGDPWKEEFY--------------FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDN 601 (648)
Q Consensus 541 -----~g~~~~~~~~--------------~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~ 601 (648)
.......+.. ..+...........+.+| +|+++|++|..+|+...+.+.+.+. ..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~----~~~ 227 (258)
T d1xkla_ 153 FLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVK-RVYIVCTEDKGIPEEFQRWQIDNIG----VTE 227 (258)
T ss_dssp HHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSC-EEEEEETTCTTTTHHHHHHHHHHHC----CSE
T ss_pred HHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccc-eeEeeecCCCCCCHHHHHHHHHHCC----CCE
Confidence 0000011111 011112223344556788 9999999999999888888777664 345
Q ss_pred eEEEEecCCCCccCCCchHHHHHHHHHHHHHHHH
Q 006375 602 ILLFKCELGAGHFSKSGRFERLREAAFTYTFLMR 635 (648)
Q Consensus 602 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 635 (648)
+++++ ++||+...++++.+.+ .+.+|+.+
T Consensus 228 ~~~i~---~~gH~~~~e~P~~~~~--~l~e~~~k 256 (258)
T d1xkla_ 228 AIEIK---GADHMAMLCEPQKLCA--SLLEIAHK 256 (258)
T ss_dssp EEEET---TCCSCHHHHSHHHHHH--HHHHHHHH
T ss_pred EEEEC---CCCCchHHhCHHHHHH--HHHHHHHh
Confidence 55664 8999765555554433 35666655
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=1.2e-14 Score=142.10 Aligned_cols=226 Identities=14% Similarity=0.117 Sum_probs=141.3
Q ss_pred cceEEEEEeCC-CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCch---hHHHHHHCCCEEEEEccCCCCCC
Q 006375 374 YFTERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---SRLSLLDRGFIFAIAQIRGGGEL 449 (648)
Q Consensus 374 ~~~~~~~~~s~-~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~~~rG~g~~ 449 (648)
+.++.++++|. -|..|++.+ + .++.|+|+++||..+......|.. ..+.+.++|++|++|+-.. +.+
T Consensus 4 ~~v~~~~~~s~~~~r~i~~~~--~------~~~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~-~~~ 74 (280)
T d1dqza_ 4 LPVEYLQVPSASMGRDIKVQF--Q------GGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQ-SSF 74 (280)
T ss_dssp SCEEEEEEEETTTTEEEEEEE--E------CCSSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCT-TCT
T ss_pred cEEEEEEEecccCCCcceEEe--e------CCCCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCC-CCc
Confidence 44566666554 467788774 1 145799999999654332222322 2356677899999999533 233
Q ss_pred Chhhhhccccc--CCCCcHhHH--HHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCccccccc
Q 006375 450 GRQWYENGKFL--KKKNTFTDF--IACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTT 525 (648)
Q Consensus 450 g~~~~~~~~~~--~~~~~~~D~--~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~ 525 (648)
...|+...... .+...++++ .+.+.+|.++..+|++|++|+|+||||++++.++.++|++|+++++.+|.+++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~~~ 154 (280)
T d1dqza_ 75 YTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSES 154 (280)
T ss_dssp TSBCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTST
T ss_pred CccccCCcccccCCcchhHHHHHHHHHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCcccC
Confidence 34454333222 222344443 35677777777789999999999999999999999999999999999998875322
Q ss_pred ccCCCC------CCCcccccccCCCCCHHHHHHHHcCCccccCCCC--CCCeEEEeecCCCCccCC--------------
Q 006375 526 MLDPTI------PLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ--NYPHILVTAGLNDPRVMY-------------- 583 (648)
Q Consensus 526 ~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~--~~P~~li~~g~~D~~v~~-------------- 583 (648)
...... ......-..+|.+.++ .+..++|+.++++. +-+++++.+|..|...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~e~~~~ 230 (280)
T d1dqza_ 155 WWPTLIGLAMNDSGGYNANSMWGPSSDP----AWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTL 230 (280)
T ss_dssp THHHHHHHHHHHTTSCCHHHHHCSTTSH----HHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHH
T ss_pred cchhhhhhhHhhccCCCHhhccCCcchh----hhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccccccccccchhhHHHH
Confidence 100000 0000000123433333 23567888777654 223599999998876543
Q ss_pred chHHHHHHHHHhcCCCCCeEEEEecCCCCcc
Q 006375 584 SEPAKFVAKLREMKTDDNILLFKCELGAGHF 614 (648)
Q Consensus 584 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~ 614 (648)
....++.++|.+++..+..+.+ ..++||.
T Consensus 231 ~~~~~~~~~l~~~g~~~~~~~~--~~~GgH~ 259 (280)
T d1dqza_ 231 RTNQTFRDTYAADGGRNGVFNF--PPNGTHS 259 (280)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEC--CSCCCSS
T ss_pred HHHHHHHHHHHHcCCCeEEEEE--cCCCccC
Confidence 3467788889888766543333 2356784
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.58 E-value=1.1e-14 Score=136.80 Aligned_cols=190 Identities=16% Similarity=0.167 Sum_probs=118.6
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHC--CCEEEEEccC------CCCCCChhhhhccccc-CCCCcHhHHHHHHHH
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDR--GFIFAIAQIR------GGGELGRQWYENGKFL-KKKNTFTDFIACAEY 475 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~~~r------G~g~~g~~~~~~~~~~-~~~~~~~D~~~~~~~ 475 (648)
+.|+||++||..+. ...|......|... ++.+++++-+ +.+..+..|+...... ......+++.+...+
T Consensus 13 ~~~~Vi~lHG~G~~--~~~~~~~~~~l~~~~~~~~~i~p~ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 90 (218)
T d1auoa_ 13 ADACVIWLHGLGAD--RYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAKM 90 (218)
T ss_dssp CSEEEEEECCTTCC--TTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCC--hhhHHHHHHHHHHhCCCcEEEccCCCccccccCCCcccCcccccccccccccchHHHHHHHHHH
Confidence 46799999994332 23455555555544 4566665431 1122234455332221 122233344333332
Q ss_pred ---HH---HcCCCCCCeEEEEeeChhHHHHHHHH-hhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHH
Q 006375 476 ---LI---KNCYCTKEKLCIEGRSAGGLLIGAVL-NMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEE 548 (648)
Q Consensus 476 ---l~---~~~~~d~~~i~i~G~S~GG~l~~~~~-~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~ 548 (648)
++ .+..+|++||+++|+|+||.+++.++ .+.+..++++|+.++....... .. +....
T Consensus 91 v~~li~~~~~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~~----~~------------~~~~~ 154 (218)
T d1auoa_ 91 VTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFGD----EL------------ELSAS 154 (218)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCCT----TC------------CCCHH
T ss_pred HHHHHHHHHHhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCccccc----cc------------ccchh
Confidence 22 12457999999999999999998775 4556789999998875422110 00 00000
Q ss_pred HHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHH
Q 006375 549 FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAF 628 (648)
Q Consensus 549 ~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~ 628 (648)
..+.| +|++||+.|++||+.+++++++.|++.+.+.++..+ ..||... .+ ++.+
T Consensus 155 ---------------~~~~p-vl~~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~----~~gH~i~---~~---~~~~ 208 (218)
T d1auoa_ 155 ---------------QQRIP-ALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEY----PMGHEVL---PQ---EIHD 208 (218)
T ss_dssp ---------------HHTCC-EEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEE----SCSSSCC---HH---HHHH
T ss_pred ---------------ccCCC-EEEEecCCCCccCHHHHHHHHHHHHHCCCCEEEEEE----CCCCccC---HH---HHHH
Confidence 11345 999999999999999999999999999988766555 4689542 22 3446
Q ss_pred HHHHHHHhcC
Q 006375 629 TYTFLMRALS 638 (648)
Q Consensus 629 ~~~fl~~~l~ 638 (648)
+.+||.++||
T Consensus 209 i~~wl~~~lg 218 (218)
T d1auoa_ 209 IGAWLAARLG 218 (218)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 7899999987
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.57 E-value=4.2e-15 Score=145.30 Aligned_cols=214 Identities=17% Similarity=0.160 Sum_probs=120.2
Q ss_pred CCcEEEEecCCCCCCCC-CCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 405 SDPLLLYGYGSYEICND-PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
..|+||++||..+.... ..|...+..|+ +||.|+++|.||.|.....-. ........+++....+..++++- .
T Consensus 25 ~~p~ivllHG~~~~~~~~~~~~~~~~~L~-~~~~vi~~D~~G~G~S~~~~~---~~~~~~~~~~~~~~~i~~~i~~~--~ 98 (281)
T d1c4xa_ 25 QSPAVVLLHGAGPGAHAASNWRPIIPDLA-ENFFVVAPDLIGFGQSEYPET---YPGHIMSWVGMRVEQILGLMNHF--G 98 (281)
T ss_dssp TSCEEEEECCCSTTCCHHHHHGGGHHHHH-TTSEEEEECCTTSTTSCCCSS---CCSSHHHHHHHHHHHHHHHHHHH--T
T ss_pred CCCEEEEECCCCCCCcHHHHHHHHHHHHh-CCCEEEEEeCCCCcccccccc---ccccchhhHHHhhhhcccccccc--c
Confidence 35899999996543322 22444455554 699999999999886532100 00000012234343333333321 2
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccc-------cC-CCCCCCcc--c-cccc-CCCCC----H
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTM-------LD-PTIPLTTA--E-WEEW-GDPWK----E 547 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~-------~~-~~~~~~~~--~-~~~~-g~~~~----~ 547 (648)
.+++.++|+|+||.++..++.++|++++++|+..|........ .. ...+.... . +..+ .++.. .
T Consensus 99 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (281)
T d1c4xa_ 99 IEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYADPRLTPYRELIHSFVYDPENFPGME 178 (281)
T ss_dssp CSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGSCCHHHHHHHHHTTSSCSTTCTTHH
T ss_pred cccceeccccccccccccccccccccccceEEeccccCccccchhHHHHHHHhhhhcccchhhhhhhhhcccccccchhh
Confidence 3689999999999999999999999999999887753211100 00 00000000 0 0001 11110 0
Q ss_pred HH--------------------HHHHH-----cCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCe
Q 006375 548 EF--------------------YFYMK-----SYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNI 602 (648)
Q Consensus 548 ~~--------------------~~~~~-----~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~ 602 (648)
.. +..+. ...+...+.++++| +|+++|++|..+|+..++++.+.+.. .++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~~~~~~~~~~~~~~~----~~~ 253 (281)
T d1c4xa_ 179 EIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHD-VLVFHGRQDRIVPLDTSLYLTKHLKH----AEL 253 (281)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSC-EEEEEETTCSSSCTHHHHHHHHHCSS----EEE
T ss_pred hHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhhhccc-eEEEEeCCCCCcCHHHHHHHHHHCCC----CEE
Confidence 00 00000 01122345667888 99999999999999888888776642 345
Q ss_pred EEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 603 LLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 603 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
++++ ++||+...+.++.+.+ .+.+||+
T Consensus 254 ~~i~---~~gH~~~~e~p~~~~~--~i~~Fl~ 280 (281)
T d1c4xa_ 254 VVLD---RCGHWAQLERWDAMGP--MLMEHFR 280 (281)
T ss_dssp EEES---SCCSCHHHHSHHHHHH--HHHHHHH
T ss_pred EEEC---CCCCchHHhCHHHHHH--HHHHHhC
Confidence 5554 8899765444443333 3567774
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.57 E-value=2.5e-14 Score=138.76 Aligned_cols=219 Identities=16% Similarity=0.150 Sum_probs=135.4
Q ss_pred eEEEEEeCC-CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCch---hHHHHHHCCCEEEEEccCCCCCCCh
Q 006375 376 TERKWASAS-DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNS---SRLSLLDRGFIFAIAQIRGGGELGR 451 (648)
Q Consensus 376 ~~~~~~~s~-~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~---~~~~l~~~G~~v~~~~~rG~g~~g~ 451 (648)
.|+++++|. .|..||..+.. +..|+|+++||..+......|.. ..+...+++++|++||- |.+.+..
T Consensus 4 ~e~~~v~s~~~~r~~~~~v~~--------~~~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g-~~~~~y~ 74 (267)
T d1r88a_ 4 YENLMVPSPSMGRDIPVAFLA--------GGPHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAG-GAYSMYT 74 (267)
T ss_dssp CEEEEEEETTTTEEEEEEEEC--------CSSSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECC-CTTSTTS
T ss_pred eEEEEEecccCCceeeEEEEC--------CCCCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECC-CCCcCCc
Confidence 467777765 46678877432 22489999999544322212221 23456667999999984 2223333
Q ss_pred hhhhcccccCCCCcHhHHHH--HHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCC
Q 006375 452 QWYENGKFLKKKNTFTDFIA--CAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP 529 (648)
Q Consensus 452 ~~~~~~~~~~~~~~~~D~~~--~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~ 529 (648)
.|... +...+++++. .+.++.++..+|++|++|+|.||||++++.++.++|++|+++++.+|.+++.......
T Consensus 75 ~~~~~-----~~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~~~~~~~ 149 (267)
T d1r88a_ 75 NWEQD-----GSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNG 149 (267)
T ss_dssp BCSSC-----TTCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHH
T ss_pred ccccc-----ccccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCCCccchh
Confidence 33321 2234555553 6778888888999999999999999999999999999999999999988753321000
Q ss_pred CCCCCc------ccccccCCCCCHHHHHHHHcCCccccCCCC--CCCeEEEeecCCCCccCC-----------chHHHHH
Q 006375 530 TIPLTT------AEWEEWGDPWKEEFYFYMKSYSPVDNVKAQ--NYPHILVTAGLNDPRVMY-----------SEPAKFV 590 (648)
Q Consensus 530 ~~~~~~------~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~--~~P~~li~~g~~D~~v~~-----------~~~~~~~ 590 (648)
...... .....||.+..+ .+.+.+|+.++++. ..+++++.+|.+|..+.. ...+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
T d1r88a_ 150 AIAAGMQQFGGVDTNGMWGAPQLG----RWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFY 225 (267)
T ss_dssp HHHHHHHHHHCCCTHHHHCCGGGS----TTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHH
T ss_pred hhhhHHhhhcCCcHhhccCCcchH----hHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhhhHHHHH
Confidence 000000 000123333211 12456777766544 334599999999976653 2456778
Q ss_pred HHHHhcCCCCCeEEEEecCCCCcc
Q 006375 591 AKLREMKTDDNILLFKCELGAGHF 614 (648)
Q Consensus 591 ~~l~~~~~~~~~~~~~~~~~~gH~ 614 (648)
++|++.+... +.+....+++|.
T Consensus 226 ~~l~~~~g~~--~~~~~~~~G~H~ 247 (267)
T d1r88a_ 226 NQYRSVGGHN--GHFDFPASGDNG 247 (267)
T ss_dssp HHHHHTTCCS--EEEECCSSCCSS
T ss_pred HHHHHcCCCc--EEEEEcCCCeEC
Confidence 8888765332 344444467883
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.56 E-value=1.4e-13 Score=133.56 Aligned_cols=209 Identities=15% Similarity=0.154 Sum_probs=120.5
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
+.|.||++||.++... .|...+..|+++||.|+++|.||.|..... ....+++++.+.+..+++.- +.
T Consensus 22 ~G~~ivllHG~~~~~~--~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~--------~~~~~~~~~~~dl~~~l~~l--~~ 89 (277)
T d1brta_ 22 TGQPVVLIHGFPLSGH--SWERQSAALLDAGYRVITYDRRGFGQSSQP--------TTGYDYDTFAADLNTVLETL--DL 89 (277)
T ss_dssp SSSEEEEECCTTCCGG--GGHHHHHHHHHTTCEEEEECCTTSTTSCCC--------SSCCSHHHHHHHHHHHHHHH--TC
T ss_pred cCCeEEEECCCCCCHH--HHHHHHHHHHhCCCEEEEEeCCCCCccccc--------ccccchhhhhhhhhhhhhcc--Cc
Confidence 3577899999665433 366667788899999999999998865321 12235566665555555442 33
Q ss_pred CeEEEEeeChhHH-HHHHHHhhCCCceeEEEecCCcccccccccC-CCCCCCcc--------------c-----cccc--
Q 006375 485 EKLCIEGRSAGGL-LIGAVLNMRPDLFKAAVAAVPFVDVLTTMLD-PTIPLTTA--------------E-----WEEW-- 541 (648)
Q Consensus 485 ~~i~i~G~S~GG~-l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~-~~~~~~~~--------------~-----~~~~-- 541 (648)
+++.++|+|+||. ++..++.++|++++++|+..+.......... ........ . +..+
T Consensus 90 ~~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (277)
T d1brta_ 90 QDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYN 169 (277)
T ss_dssp CSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTT
T ss_pred ccccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchhhhhhccccccc
Confidence 6899999999975 4555677789999999988764322211100 00000000 0 0000
Q ss_pred -----CCCCCHHH----HH---------HHHc-----CCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCC
Q 006375 542 -----GDPWKEEF----YF---------YMKS-----YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKT 598 (648)
Q Consensus 542 -----g~~~~~~~----~~---------~~~~-----~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~ 598 (648)
........ +. .... .+....+.++++| +|+++|++|..+++....+..++. ..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~g~~D~~~~~~~~~~~~~~~---~~ 245 (277)
T d1brta_ 170 LDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVP-ALILHGTGDRTLPIENTARVFHKA---LP 245 (277)
T ss_dssp HHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSC-EEEEEETTCSSSCGGGTHHHHHHH---CT
T ss_pred cchhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhhHHHHHHhcCcc-ceeEeecCCCCcCHHHHHHHHHHh---CC
Confidence 00000000 00 0000 0111234556888 999999999999987665554433 22
Q ss_pred CCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 599 DDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 599 ~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
..++++++ ++||+...+..+.+.+ .+.+||.
T Consensus 246 ~~~~~~i~---~~gH~~~~e~p~~~~~--~i~~fL~ 276 (277)
T d1brta_ 246 SAEYVEVE---GAPHGLLWTHAEEVNT--ALLAFLA 276 (277)
T ss_dssp TSEEEEET---TCCTTHHHHTHHHHHH--HHHHHHH
T ss_pred CCEEEEEC---CCCCchHHhCHHHHHH--HHHHHHC
Confidence 34556665 8999765444443332 4577875
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.56 E-value=3.7e-15 Score=138.46 Aligned_cols=182 Identities=17% Similarity=0.120 Sum_probs=117.9
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCC-CChhhhhcccccCCCCcHhHHHHHHHHHHH----
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGE-LGRQWYENGKFLKKKNTFTDFIACAEYLIK---- 478 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~-~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~---- 478 (648)
+..|+||++||+.+.. ..|......++ .++.|+.++.+..++ ++..+. ....+....+|+...++.+..
T Consensus 15 ~~~P~vi~lHG~G~~~--~~~~~~~~~l~-~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (203)
T d2r8ba1 15 AGAPLFVLLHGTGGDE--NQFFDFGARLL-PQATILSPVGDVSEHGAARFFR---RTGEGVYDMVDLERATGKMADFIKA 88 (203)
T ss_dssp TTSCEEEEECCTTCCH--HHHHHHHHHHS-TTSEEEEECCSEEETTEEESSC---BCGGGCBCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCH--HHHHHHHHHhc-cCCeEEEecccccccccccccc---ccCccccchhHHHHHHHHHHHHHHH
Confidence 4579999999955432 22333344444 578888886653221 111111 112222334454444444322
Q ss_pred -cCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCC
Q 006375 479 -NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYS 557 (648)
Q Consensus 479 -~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~s 557 (648)
...+++++|+++|+|+||.++..++.++|+.+.++++..|.......
T Consensus 89 ~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~~-------------------------------- 136 (203)
T d2r8ba1 89 NREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEPK-------------------------------- 136 (203)
T ss_dssp HHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCCC--------------------------------
T ss_pred hhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeeccccccccc--------------------------------
Confidence 12368899999999999999999999999999999999886431100
Q ss_pred ccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHHHh
Q 006375 558 PVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRA 636 (648)
Q Consensus 558 p~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 636 (648)
........ +++++||++|++||+.++++++++|++.|.+.++++++ +||... .+. +.++.+||.++
T Consensus 137 --~~~~~~~~-~~~i~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~~~----ggH~~~---~~~---~~~~~~wl~~~ 202 (203)
T d2r8ba1 137 --ISPAKPTR-RVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHP----GGHEIR---SGE---IDAVRGFLAAY 202 (203)
T ss_dssp --CCCCCTTC-EEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEEEEES----SCSSCC---HHH---HHHHHHHHGGG
T ss_pred --cccccccc-hhhccccCCCCcccHHHHHHHHHHHHHCCCCEEEEEEC----CCCcCC---HHH---HHHHHHHHHhc
Confidence 00011123 59999999999999999999999999999887766663 479753 222 33456888764
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.55 E-value=2.9e-14 Score=141.52 Aligned_cols=121 Identities=13% Similarity=0.078 Sum_probs=89.5
Q ss_pred CCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCC
Q 006375 383 ASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKK 462 (648)
Q Consensus 383 s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~ 462 (648)
+.+|.++... - .+ .....|+||++||..+.. ..|......|+++||.|+++|.||.|..... ....
T Consensus 30 ~~~g~~~~y~-~--~G---~~~~~p~llllHG~~~~~--~~~~~~~~~l~~~~~~vi~~Dl~G~G~S~~~------~~~~ 95 (310)
T d1b6ga_ 30 GYPGLRAHYL-D--EG---NSDAEDVFLCLHGEPTWS--YLYRKMIPVFAESGARVIAPDFFGFGKSDKP------VDEE 95 (310)
T ss_dssp TCTTCEEEEE-E--EE---CTTCSCEEEECCCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCEE------SCGG
T ss_pred CCCCEEEEEE-E--ec---CCCCCCEEEEECCCCCch--HHHHHHHHHhhccCceEEEeeecCccccccc------cccc
Confidence 4578888643 1 11 123468999999966543 3356667888999999999999998866431 1112
Q ss_pred CCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 463 KNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 463 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
...++++.+.+..+++.- +.+++.++|+||||.++..+|.++|++++++|+..+.
T Consensus 96 ~~~~~~~~~~l~~~l~~l--~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~ 150 (310)
T d1b6ga_ 96 DYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC 150 (310)
T ss_dssp GCCHHHHHHHHHHHHHHH--TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCC
T ss_pred cccccccccchhhhhhhc--cccccccccceecccccccchhhhccccceEEEEcCc
Confidence 246778887777777653 3368999999999999999999999999999988664
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=1.9e-12 Score=125.21 Aligned_cols=242 Identities=12% Similarity=0.070 Sum_probs=159.1
Q ss_pred CEEEEEEeCCC-CeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEE
Q 006375 93 KLVAYAEDTKG-DEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLY 169 (648)
Q Consensus 93 ~~la~~~~~~G-~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 169 (648)
++|||+++.+| .+.++|||+|.+++..+..+ ......+++||||| +|+|++.. .....++.++..++. ...+.
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~--~~~~~~~~~~~~~~~--~~~~~ 79 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE--SGRSALVIQTLANGA--VRQVA 79 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECT--TSSCEEEEEETTTCC--EEEEE
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEee--ccCcceeeeecccCc--eeEEe
Confidence 78999998864 44679999999987766542 33445569999999 99999863 345668888888762 23333
Q ss_pred eecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCEEEEEeccCCCCCcEEE
Q 006375 170 HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITRRSDELFNSELL 248 (648)
Q Consensus 170 ~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~l~ 248 (648)
.. ........|||||+.+++.+...+...+......... ......... .....++++++.+++.+... ....|+
T Consensus 80 ~~--~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~i~ 154 (269)
T d2hqsa1 80 SF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQA--GRPQVY 154 (269)
T ss_dssp CC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTT--SSCEEE
T ss_pred ee--ecccccceecCCCCeeeEeeecCCccceeeccccccc-ceeeeeccccccccccccccccceeccccc--CCceEe
Confidence 22 2334467899999999998877777777777766554 333332222 23345888999999988864 346799
Q ss_pred EEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCc
Q 006375 249 ACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESV 328 (648)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~ 328 (648)
..+++...... +...........++++++.+++....++...+++++... +... +. +... ......++
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~--~~~~-------~~-~~~~-~~~~p~~S 222 (269)
T d2hqsa1 155 KVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--GGVQ-------VL-SSTF-LDETPSLA 222 (269)
T ss_dssp EEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT--CCEE-------EC-CCSS-SCEEEEEC
T ss_pred eeeccccccee-eecccccccccccccccceeEEEeecCCceeeeEeeccc--ccce-------Ee-ecCc-cccceEEC
Confidence 99987633222 332222222334455667888888888888888888763 3211 11 1111 11224567
Q ss_pred ccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 329 FSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 329 ~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+|++.|+|.. .......+|.+++.+++
T Consensus 223 PDG~~i~f~s-~~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 223 PNGTMVIYSS-SQGMGSVLNLVSTDGRF 249 (269)
T ss_dssp TTSSEEEEEE-EETTEEEEEEEETTSCC
T ss_pred CCCCEEEEEE-cCCCCcEEEEEECCCCC
Confidence 8999888764 44556689999998776
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=6.1e-14 Score=137.03 Aligned_cols=248 Identities=16% Similarity=0.163 Sum_probs=147.1
Q ss_pred ceEEEEEeCC-CCeEEeEEEEEeeCcc----ccCCCCcEEEEecCCCCCCCCCCCchhH-HHHHHCCCEEEEEccCCC--
Q 006375 375 FTERKWASAS-DGTQIPICIVYRKNLV----KLDGSDPLLLYGYGSYEICNDPAFNSSR-LSLLDRGFIFAIAQIRGG-- 446 (648)
Q Consensus 375 ~~~~~~~~s~-~g~~i~~~l~~~~~~~----~~~~~~P~vl~~hGg~~~~~~~~~~~~~-~~l~~~G~~v~~~~~rG~-- 446 (648)
...++++.|. -|.++++.++.|++.. ..++++|+|.++||..+....+.....+ ....+.|.+|++++.-..
T Consensus 13 ~~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~vv~~~~~p~~~ 92 (299)
T d1pv1a_ 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRGD 92 (299)
T ss_dssp EEEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEECCSSCCST
T ss_pred EEEEEEEECcccCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCCHHHHHHhhhHHHHHHHcCCceecCCCccccc
Confidence 3566666665 4788999999998751 1345699999999965543221111112 334456999999874211
Q ss_pred ---C--------CCChhhhhcccc--cCCCCcHhHHH--HHHHHHHHcCC-------CCCCeEEEEeeChhHHHHHHHHh
Q 006375 447 ---G--------ELGRQWYENGKF--LKKKNTFTDFI--ACAEYLIKNCY-------CTKEKLCIEGRSAGGLLIGAVLN 504 (648)
Q Consensus 447 ---g--------~~g~~~~~~~~~--~~~~~~~~D~~--~~~~~l~~~~~-------~d~~~i~i~G~S~GG~l~~~~~~ 504 (648)
+ +.+..|+..... ..+...++|++ ..+.++.++.. .++++.+|+|+||||+.|+.++.
T Consensus 93 ~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl~~al 172 (299)
T d1pv1a_ 93 EVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYL 172 (299)
T ss_dssp TSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHHHHHH
T ss_pred ccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHHHHHH
Confidence 0 111122211100 00112334433 23344444322 33468999999999999988886
Q ss_pred h--CCCceeEEEecCCcccccccccCCCCCCCcccc-cccCCCCCHHHHHHHHcCCccccC---CCCCCCeEEEeecCCC
Q 006375 505 M--RPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW-EEWGDPWKEEFYFYMKSYSPVDNV---KAQNYPHILVTAGLND 578 (648)
Q Consensus 505 ~--~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~sp~~~~---~~~~~P~~li~~g~~D 578 (648)
+ +|++|+++++.+|+.+...... ....+ ..+|+... .+.+++|...+ ++...|++++.+|++|
T Consensus 173 ~~~~p~~f~~~~s~s~~~~~~~~~~------~~~~~~~~~g~~~~-----~~~~~~~~~l~~~~~~~~~~~i~~~~G~~D 241 (299)
T d1pv1a_ 173 KGYSGKRYKSCSAFAPIVNPSNVPW------GQKAFKGYLGEEKA-----QWEAYDPCLLIKNIRHVGDDRILIHVGDSD 241 (299)
T ss_dssp HTGGGTCCSEEEEESCCCCSTTSHH------HHHHHHHHSCC---------CGGGCHHHHGGGSCCCTTCCEEEECCTTC
T ss_pred HhcCCCceEEEeeccCcCCcccccc------hhhhhhhhcccchh-----hhhhcCHHHHHHHhhccCCcceeEecCCCC
Confidence 5 5899999999999876532210 00111 12233211 12344554433 3345667999999999
Q ss_pred CccCCc-hHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHH-HHHHHHHHHHhcCC
Q 006375 579 PRVMYS-EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLRE-AAFTYTFLMRALSM 639 (648)
Q Consensus 579 ~~v~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~-~~~~~~fl~~~l~~ 639 (648)
...+.. ....|.+++++++.+.. +.+...++.+|. ...|+. +.+.+.|+.++||+
T Consensus 242 ~~~~~~~~~~~f~~~~~~~g~~~~-~~~~~~~G~~Hs-----w~yW~~~i~~~l~f~a~~lgl 298 (299)
T d1pv1a_ 242 PFLEEHLKPELLLEAVKATSWQDY-VEIKKVHGFDHS-----YYFVSTFVPEHAEFHARNLGL 298 (299)
T ss_dssp TTTTTTCCTHHHHHHHTTSTTTTS-EEEECCTTCCSS-----HHHHHHHHHHHHHHHHHHTTC
T ss_pred cchhhhhcHHHHHHHHHhcCCCcc-eEEEecCCCCcC-----HHHHHHHHHHHHHHHHHhcCC
Confidence 987654 46788999998887765 556666566783 222333 44678999999997
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.53 E-value=2.7e-14 Score=139.88 Aligned_cols=221 Identities=12% Similarity=0.065 Sum_probs=131.8
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCC
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKK 463 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~ 463 (648)
.+|.+|..... +. ...|+||++||.++... .|...+..| .+||.|+++|.||.|.... ....
T Consensus 14 ~~g~~i~y~~~---G~----~~~p~lvllHG~~~~~~--~~~~~~~~L-~~~~~vi~~d~~G~G~S~~--------~~~~ 75 (291)
T d1bn7a_ 14 VLGERMHYVDV---GP----RDGTPVLFLHGNPTSSY--LWRNIIPHV-APSHRCIAPDLIGMGKSDK--------PDLD 75 (291)
T ss_dssp ETTEEEEEEEE---SC----SSSSCEEEECCTTCCGG--GGTTTHHHH-TTTSCEEEECCTTSTTSCC--------CSCC
T ss_pred ECCEEEEEEEe---CC----CCCCeEEEECCCCCCHH--HHHHHHHHH-hcCCEEEEEeCCCCccccc--------cccc
Confidence 47888875522 11 12467999999765543 355556666 4599999999999886532 1223
Q ss_pred CcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCC-----------CCC
Q 006375 464 NTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDP-----------TIP 532 (648)
Q Consensus 464 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~-----------~~~ 532 (648)
..++++...+..++++- +-+++.++|+|+||.++..++.++|+.++++|+..+........... ...
T Consensus 76 ~~~~~~~~~l~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (291)
T d1bn7a_ 76 YFFDDHVRYLDAFIEAL--GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRTAD 153 (291)
T ss_dssp CCHHHHHHHHHHHHHHT--TCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECCCBCSGGGSCHHHHHHHHHHTSTT
T ss_pred cchhHHHHHHhhhhhhh--ccccccccccccccchhHHHHHhCCcceeeeeeeccccCCccchhhhhhhhhHHHHHhhhh
Confidence 45677777777766652 34689999999999999999999999999988765433211100000 000
Q ss_pred ------CCcccc-----c-ccCCCCCHH-----------------HHHHHHcCCc--------------cccCCCCCCCe
Q 006375 533 ------LTTAEW-----E-EWGDPWKEE-----------------FYFYMKSYSP--------------VDNVKAQNYPH 569 (648)
Q Consensus 533 ------~~~~~~-----~-~~g~~~~~~-----------------~~~~~~~~sp--------------~~~~~~~~~P~ 569 (648)
.....+ . ....+...+ .......... ...++++++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P- 232 (291)
T d1bn7a_ 154 VGRELIIDQNAFIEGVLPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNEIPIAGEPANIVALVEAYMNWLHQSPVP- 232 (291)
T ss_dssp HHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCCSC-
T ss_pred hHHHhhhhhhhhHHhhhhhhccccchHHHHHHHHHHhcchhhhHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhcCCCC-
Confidence 000000 0 001111111 0111111111 0113456888
Q ss_pred EEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 570 ILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 570 ~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
+|+++|++|..+|+....++.+.+.. .+.++++ ++||+...+.++.+.+ .+.+||.
T Consensus 233 ~lii~G~~D~~~~~~~~~~~~~~~~~----~~~~~i~---~~gH~~~~e~p~~v~~--~i~~fL~ 288 (291)
T d1bn7a_ 233 KLLFWGTPGVLIPPAEAARLAESLPN----CKTVDIG---PGLHYLQEDNPDLIGS--EIARWLP 288 (291)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHSTT----EEEEEEE---EESSCGGGTCHHHHHH--HHHHHSG
T ss_pred EEEEEeCCCCCcCHHHHHHHHHHCCC----CEEEEEC---CCCCchHHhCHHHHHH--HHHHHHH
Confidence 99999999999999888888777643 3456665 7899876655554433 3456653
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.53 E-value=1.1e-13 Score=137.66 Aligned_cols=126 Identities=15% Similarity=0.047 Sum_probs=90.0
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
++-++++.||.+|....+ + +.+.|.||++||+++....+... ..++..||.|+++|.||.|.....
T Consensus 12 ~~~~i~~~dg~~i~y~~~---G----~~~g~pvvllHG~~g~~~~~~~~---~~~l~~~~~Vi~~D~rG~G~S~~~---- 77 (313)
T d1azwa_ 12 QQGSLKVDDRHTLYFEQC---G----NPHGKPVVMLHGGPGGGCNDKMR---RFHDPAKYRIVLFDQRGSGRSTPH---- 77 (313)
T ss_dssp EEEEEECSSSCEEEEEEE---E----CTTSEEEEEECSTTTTCCCGGGG---GGSCTTTEEEEEECCTTSTTSBST----
T ss_pred CCCEEEeCCCcEEEEEEe---c----CCCCCEEEEECCCCCCccchHHH---hHHhhcCCEEEEEeccccCCCCcc----
Confidence 666777889987765422 1 12346688899987765543222 233457999999999998865321
Q ss_pred ccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 457 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
......+++++.+.+..++++- +.+++.++|+|+||.+++.++.++|++++++|+..+..
T Consensus 78 --~~~~~~~~~~~~~dl~~~~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 137 (313)
T d1azwa_ 78 --ADLVDNTTWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp --TCCTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred --ccccchhHHHHHHHHHHHHHhh--ccccceeEEecCCcHHHHHHHHHhhhceeeeeEecccc
Confidence 1223356778877777777653 34789999999999999999999999999999887643
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.52 E-value=2.5e-14 Score=136.68 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=76.4
Q ss_pred EEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCCeEE
Q 006375 409 LLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKEKLC 488 (648)
Q Consensus 409 vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~ 488 (648)
+|++||..+.+ ..|...+..|.++||.|+++|.||.|..... ......++++.+.+..++.+- ...+++.
T Consensus 5 ~vliHG~~~~~--~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~-------~~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 74 (256)
T d3c70a1 5 FVLIHTICHGA--WIWHKLKPLLEALGHKVTALDLAASGVDPRQ-------IEEIGSFDEYSEPLLTFLEAL-PPGEKVI 74 (256)
T ss_dssp EEEECCTTCCG--GGGTTHHHHHHHTTCEEEEECCTTSTTCSCC-------GGGCCSHHHHTHHHHHHHHHS-CTTCCEE
T ss_pred EEEeCCCCCCH--HHHHHHHHHHHhCCCEEEEEcCCCCCCCCCC-------CCCCCCHHHHHHHhhhhhhhh-cccccee
Confidence 57899975543 3467777888899999999999999876432 112245667666665554332 2347899
Q ss_pred EEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 489 IEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 489 i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
++|+|+||.+++.++.++|++++++|+..+..
T Consensus 75 lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 106 (256)
T d3c70a1 75 LVGESCGGLNIAIAADKYCEKIAAAVFHNSVL 106 (256)
T ss_dssp EEEETTHHHHHHHHHHHHGGGEEEEEEESCCC
T ss_pred ecccchHHHHHHHHhhcCchhhhhhheecccc
Confidence 99999999999999999999999999877643
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.51 E-value=8.3e-14 Score=135.36 Aligned_cols=104 Identities=14% Similarity=0.103 Sum_probs=74.4
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTK 484 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 484 (648)
..|.||++||.++.. ..|...+..|+++||.|+++|.||.|..... ....+++++...+..+++. .+.
T Consensus 22 ~g~~illlHG~~~~~--~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~--------~~~~~~~~~~~di~~~i~~--l~~ 89 (279)
T d1hkha_ 22 SGQPVVLIHGYPLDG--HSWERQTRELLAQGYRVITYDRRGFGGSSKV--------NTGYDYDTFAADLHTVLET--LDL 89 (279)
T ss_dssp SSEEEEEECCTTCCG--GGGHHHHHHHHHTTEEEEEECCTTSTTSCCC--------SSCCSHHHHHHHHHHHHHH--HTC
T ss_pred cCCeEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEEechhhCCcccc--------ccccchhhhhhhhhhhhhh--cCc
Confidence 347789999965543 3466667788899999999999998865321 1234566666655555554 234
Q ss_pred CeEEEEeeChhHH-HHHHHHhhCCCceeEEEecCCcc
Q 006375 485 EKLCIEGRSAGGL-LIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 485 ~~i~i~G~S~GG~-l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
+++.++|+|+||. ++..++.++|++++++|+.++..
T Consensus 90 ~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~ 126 (279)
T d1hkha_ 90 RDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLE 126 (279)
T ss_dssp CSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred CccccccccccccchhhhhccccccccceeEEeeccC
Confidence 6899999999975 55556777799999999877543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.8e-12 Score=135.68 Aligned_cols=260 Identities=10% Similarity=0.055 Sum_probs=150.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc--------------------CccceeEEecCC-eEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV--------------------GVTASVEWAGNE-ALV 140 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~--------------------~~~~~~~WspDg-~l~ 140 (648)
.+..+.|||||++|||..+ .+||+++..+++....+.. +....+.||||| +|+
T Consensus 115 ~l~~~~wSPDG~~iafv~~------~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~ia 188 (465)
T d1xfda1 115 KLQYAGWGPKGQQLIFIFE------NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA 188 (465)
T ss_dssp CCSBCCBCSSTTCEEEEET------TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred ccceeeeccCCceEEEEec------ceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEE
Confidence 3456899999999999874 2799999988765432211 112357799999 999
Q ss_pred EEEeCCCCC-----------------------------CceEEEEECCCCCCCcEEEEeec----CCCeEEEEEeCCCCc
Q 006375 141 YITMDEILR-----------------------------PDKAWLHKLEADQSNDICLYHEK----DDIYSLGLQASESKK 187 (648)
Q Consensus 141 y~~~~~~~~-----------------------------~~~l~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~s~Dg~ 187 (648)
|.+.++... ..+|+.+++.++.. ........ ...+...+.|++|++
T Consensus 189 f~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~-~~~~~~~~~~~~~~~y~~~~~W~~d~~ 267 (465)
T d1xfda1 189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTK 267 (465)
T ss_dssp EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred EEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcE-EEEEeccCcCccccceeeeeEEcCCCe
Confidence 998754210 12467777765522 11111111 122445678999998
Q ss_pred EEEEEEcccc-ccEEEEEECCCCCceeEeeeccc--c-----eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC-----
Q 006375 188 FLFIASESKI-TRFVFYLDVSKPEELRVLTPRVV--G-----VDTAASHRGNHFFITRRSDELFNSELLACPVDN----- 254 (648)
Q Consensus 188 ~l~~~~~~~~-~~~l~~~dl~~~~~~~~l~~~~~--~-----~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~----- 254 (648)
.++...++.. ...|+++|..+++ .+.+..... + ....|++||+.++|+.........+++.+.+..
T Consensus 268 ~~~~~~nR~q~~~~i~~~d~~tg~-~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~ 346 (465)
T d1xfda1 268 VAVTWLNRAQNVSILTLCDATTGV-CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS 346 (465)
T ss_dssp EEEEEEETTSCEEEEEEEETTTCC-EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS
T ss_pred EEEEEEccccccceEEEEcCCCCc-EEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccC
Confidence 7776666543 4689999999997 555543221 1 124599999988876432222334555554311
Q ss_pred -CCcceeEecCCCCc-ccceEEEeCCEEEEEEecCC--eeEEEEEEcCCCCCc-ccccCCCceeecCCCeeeeeCCCCcc
Q 006375 255 -TSETTVLIPHRESV-KLQDIQLFIDHLAVYEREGG--LQKITTYRLPAVGEP-LKSLQGGKSVEFIDPVYSIDPSESVF 329 (648)
Q Consensus 255 -~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~--~~~l~v~~~~~~g~~-~~~l~~~~~i~~~~~~~~v~~~~~~~ 329 (648)
....+.++.....+ .+.+++..++.+++....+. ..+|+.++++ |.. ..+|+.. +.+.. ....+..++
T Consensus 347 ~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~--g~~~~~~lt~~----~~~~~-~~~~~~~S~ 419 (465)
T d1xfda1 347 SNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV--GNFNRQCLSCD----LVENC-TYFSASFSH 419 (465)
T ss_dssp SSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS--TTCCCBCSSTT----SSSSC-CCCEEEECT
T ss_pred CCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECC--CCCcceeeccc----cCCCC-CEEEEEECC
Confidence 11122233332221 23334444567887776554 3356666655 432 2333211 11111 112244568
Q ss_pred cccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 330 SSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 330 ~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
+++.++..++++..|. +..++..+++.
T Consensus 420 ~~~y~v~~~s~~~~P~-~~~~~~~~~~~ 446 (465)
T d1xfda1 420 SMDFFLLKCEGPGVPM-VTVHNTTDKKK 446 (465)
T ss_dssp TSSEEEEECCSSSSCC-EEEEETTTCCE
T ss_pred CCCEEEEEeecCCCCe-EEEEECCCCCE
Confidence 8999999999999887 55666677763
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.49 E-value=1.5e-13 Score=134.44 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=83.8
Q ss_pred EEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcc
Q 006375 378 RKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENG 457 (648)
Q Consensus 378 ~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~ 457 (648)
...+.. +|.+|... . . |..|+||++||..+.. ..|...+..|+ ++|.|+++|.||.|.......
T Consensus 10 ~~~~~~-~~~~l~y~----~-~----G~gp~vv~lHG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~~~--- 73 (293)
T d1ehya_ 10 HYEVQL-PDVKIHYV----R-E----GAGPTLLLLHGWPGFW--WEWSKVIGPLA-EHYDVIVPDLRGFGDSEKPDL--- 73 (293)
T ss_dssp EEEEEC-SSCEEEEE----E-E----ECSSEEEEECCSSCCG--GGGHHHHHHHH-TTSEEEEECCTTSTTSCCCCT---
T ss_pred ceEEEE-CCEEEEEE----E-E----CCCCeEEEECCCCCCH--HHHHHHHHHHh-cCCEEEEecCCcccCCccccc---
Confidence 344443 56667643 1 1 2357899999965543 23565556664 589999999999885432110
Q ss_pred cccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 458 KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 458 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
.......++++...+..+++. .+.+++.++|+||||.+++.++.++|+++.++|+..|..
T Consensus 74 -~~~~~~~~~~~a~~~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 133 (293)
T d1ehya_ 74 -NDLSKYSLDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQ 133 (293)
T ss_dssp -TCGGGGCHHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSC
T ss_pred -cccccccchhhhhHHHhhhhh--cCccccccccccccccchhcccccCccccceeeeeeccC
Confidence 111123456666666666554 234689999999999999999999999999999888753
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=5.1e-14 Score=135.34 Aligned_cols=201 Identities=15% Similarity=0.089 Sum_probs=117.6
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|.||++||..+.. ..|...+..|. +||.|+++|.||.|.... .....+.|+. +.+.... .+
T Consensus 11 ~~~lvllHG~~~~~--~~~~~~~~~L~-~~~~vi~~D~~G~G~S~~---------~~~~~~~d~~---~~~~~~~---~~ 72 (256)
T d1m33a_ 11 NVHLVLLHGWGLNA--EVWRCIDEELS-SHFTLHLVDLPGFGRSRG---------FGALSLADMA---EAVLQQA---PD 72 (256)
T ss_dssp SSEEEEECCTTCCG--GGGGGTHHHHH-TTSEEEEECCTTSTTCCS---------CCCCCHHHHH---HHHHTTS---CS
T ss_pred CCeEEEECCCCCCH--HHHHHHHHHHh-CCCEEEEEeCCCCCCccc---------cccccccccc---ccccccc---cc
Confidence 46788899965443 33666666665 689999999999875421 1223445544 3333332 36
Q ss_pred eEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccccccccCCCCCCCc-------------ccccc------cCCCC-
Q 006375 486 KLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTT-------------AEWEE------WGDPW- 545 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~-------------~~~~~------~g~~~- 545 (648)
++.++|+|+||.+++.++.++|+.++++++..+................. ..+.. .+...
T Consensus 73 ~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
T d1m33a_ 73 KAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETA 152 (256)
T ss_dssp SEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTH
T ss_pred ceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhccccch
Confidence 89999999999999999999999999988776432211110000000000 00000 00000
Q ss_pred -----------------CHH----HHHHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEE
Q 006375 546 -----------------KEE----FYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILL 604 (648)
Q Consensus 546 -----------------~~~----~~~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 604 (648)
... ....+...+....++++++| +|+++|++|..+|+..+.++.+.+. ..++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P-~lii~G~~D~~~p~~~~~~l~~~~~----~~~~~~ 227 (256)
T d1m33a_ 153 RQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMP-FLRLYGYLDGLVPRKVVPMLDKLWP----HSESYI 227 (256)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSC-EEEEEETTCSSSCGGGCC-CTTTCT----TCEEEE
T ss_pred hhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHhccCC-ccccccccCCCCCHHHHHHHHHHCC----CCEEEE
Confidence 011 11222333444556677898 9999999999999877766654432 345566
Q ss_pred EEecCCCCccCCCchHHHHHHHHHHHHHHH
Q 006375 605 FKCELGAGHFSKSGRFERLREAAFTYTFLM 634 (648)
Q Consensus 605 ~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 634 (648)
++ ++||+...++++.+.+ .+.+||.
T Consensus 228 i~---~~gH~~~~e~p~~~~~--~l~~fl~ 252 (256)
T d1m33a_ 228 FA---KAAHAPFISHPAEFCH--LLVALKQ 252 (256)
T ss_dssp ET---TCCSCHHHHSHHHHHH--HHHHHHT
T ss_pred EC---CCCCchHHHCHHHHHH--HHHHHHH
Confidence 64 8899765444443333 3456654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.47 E-value=1.7e-12 Score=126.08 Aligned_cols=242 Identities=10% Similarity=0.087 Sum_probs=150.6
Q ss_pred EEeCCC--CCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCC-CCCceEEEEECCC
Q 006375 86 FQVSPD--NKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEI-LRPDKAWLHKLEA 160 (648)
Q Consensus 86 ~~~SPD--G~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~-~~~~~l~~~~l~~ 160 (648)
+.+||| |++|||+.+ | +||++|+++|+.+..+ .++....++||||| +|+|++.... ....+||.+++.+
T Consensus 4 ~~~sPdi~G~~v~f~~~--~----dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~ 77 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCC--D----DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN 77 (281)
T ss_dssp CCEEEEEETTEEEEEET--T----EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred cccCCCCCCCEEEEEeC--C----cEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence 467999 999999964 3 6999999999987654 34456679999999 9999886443 3345799999888
Q ss_pred CCCCcEEEEeec----CC-CeEEEEEeCCCCcEEEEEEcccc---ccEEEEEECCCCCceeEeeecccceeeeEeecCCE
Q 006375 161 DQSNDICLYHEK----DD-IYSLGLQASESKKFLFIASESKI---TRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNH 232 (648)
Q Consensus 161 ~~~~~~~~~~~~----~~-~~~~~~~~s~Dg~~l~~~~~~~~---~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~ 232 (648)
+. ...+.... .. .....+.|+|||+.|++...... ...++.++.+++. .+..... .....+.++++.
T Consensus 78 g~--~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~ 152 (281)
T d1k32a2 78 GE--IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN-FVPLNLG--PATHILFADGRR 152 (281)
T ss_dssp TE--EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE-EEECCSC--SCSEEEEETTEE
T ss_pred Cc--eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce-eEEecCC--ccceeeecCCCe
Confidence 73 23222111 01 12235689999999998765432 2467778877664 4433222 223457788887
Q ss_pred EEEEeccCCCCC-------cEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCccc
Q 006375 233 FFITRRSDELFN-------SELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLK 305 (648)
Q Consensus 233 l~~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~ 305 (648)
+++......... .......... ......+... .....+.+.++.+++....++..+|++++++ ++.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~~~ 227 (281)
T d1k32a2 153 VIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMS--THVSSPVIVGHRIYFITDIDGFGQIYSTDLD--GKDLR 227 (281)
T ss_dssp EEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCS--SCCEEEEEETTEEEEEECTTSSCEEEEEETT--SCSCE
T ss_pred EEEeeccccceeeeeccCCcceeeeeccc-cceeeccCCc--cccceeeeeccccceecccccccceEEEeCC--CCceE
Confidence 777665422110 0111111111 1111122222 1234566778888888888888899999988 55554
Q ss_pred ccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 306 SLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 306 ~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
.|+.... +.+ ..+++|++.|+|... +.+|.+|+.+++.
T Consensus 228 ~lt~~~~-------~~~--~~~SpDG~~I~f~~~-----~~l~~~d~~~g~~ 265 (281)
T d1k32a2 228 KHTSFTD-------YYP--RHLNTDGRRILFSKG-----GSIYIFNPDTEKI 265 (281)
T ss_dssp ECCCCCS-------SCE--EEEEESSSCEEEEET-----TEEEEECTTTCCE
T ss_pred EeecCCC-------ccc--ccCcCCCCEEEEEeC-----CEEEEEECCCCCE
Confidence 4443221 112 234578888877543 5799999999983
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.46 E-value=6.1e-14 Score=136.51 Aligned_cols=146 Identities=10% Similarity=-0.025 Sum_probs=98.8
Q ss_pred ceEEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC-CCchhHH----HHHH----CCCEEEEEccCC
Q 006375 375 FTERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNSSRL----SLLD----RGFIFAIAQIRG 445 (648)
Q Consensus 375 ~~~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~~~----~l~~----~G~~v~~~~~rG 445 (648)
+.+.+++++.+|+ .+++++.|++. ++++++|+|+++||+.+..... .+..... .+.. ..+.|+.++.++
T Consensus 26 ~v~~~~~~~~~~~-r~~~vylP~~y-~~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 103 (273)
T d1wb4a1 26 RIVKETYTGINGT-KSLNVYLPYGY-DPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNG 103 (273)
T ss_dssp EEEEEEEEETTEE-EEEEEEECTTC-CTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEECCSCS
T ss_pred eEEEEEEecCCCe-EEEEEEeCCCC-CCCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeeccccCC
Confidence 5688889988886 58999999987 7778899999999987654332 1221111 1111 368999999988
Q ss_pred CCCCChhhhhcccccCCCC-cHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcccc
Q 006375 446 GGELGRQWYENGKFLKKKN-TFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDV 522 (648)
Q Consensus 446 ~g~~g~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~d~ 522 (648)
....+..+........... ...++...+..+..+..+|++|++++|+|+||++++.++.++|++|+++++.+|..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~~~~ 181 (273)
T d1wb4a1 104 GNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWY 181 (273)
T ss_dssp TTCCTTTHHHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCCB
T ss_pred CCCccccchhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCccccc
Confidence 7777666543211111000 0001111112222233479999999999999999999999999999999999997653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.45 E-value=3.5e-11 Score=126.38 Aligned_cols=275 Identities=12% Similarity=0.057 Sum_probs=156.4
Q ss_pred CCceEEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCC----CCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC
Q 006375 63 PPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTK----GDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE 137 (648)
Q Consensus 63 ~~~~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~----G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg 137 (648)
+.+++|++..++... .-.+.+++|||||++|||..+.. .+-..+++++|+++++..... .+.....+.|||||
T Consensus 46 ~~~~~~~~~~~~~~~--~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG 123 (470)
T d2bgra1 46 GNSSVFLENSTFDEF--GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVG 123 (470)
T ss_dssp CCEEEEECTTTTTTS--SSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSST
T ss_pred CCEEEEEchhhhhhc--cCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCc
Confidence 456788887776532 12466889999999999997532 233568999999999876543 23345569999999
Q ss_pred -eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCC-----------------CeEEEEEeCCCCcEEEEEEcccc--
Q 006375 138 -ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDD-----------------IYSLGLQASESKKFLFIASESKI-- 197 (648)
Q Consensus 138 -~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~-----------------~~~~~~~~s~Dg~~l~~~~~~~~-- 197 (648)
.|+|.+. ..+|.+++.++.. ..+.....+ .....+.|||||++|++...+..
T Consensus 124 ~~ia~~~~------~~l~~~~~~~g~~--~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v 195 (470)
T d2bgra1 124 HKLAYVWN------NDIYVKIEPNLPS--YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEV 195 (470)
T ss_dssp TCEEEEET------TEEEEESSTTSCC--EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred ceeeEeec------ccceEEECCCCce--eeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcC
Confidence 9999753 3588888777632 222111100 01123569999999998642210
Q ss_pred -------------------------------ccEEEEEECCCCCc---ee------------------------------
Q 006375 198 -------------------------------TRFVFYLDVSKPEE---LR------------------------------ 213 (648)
Q Consensus 198 -------------------------------~~~l~~~dl~~~~~---~~------------------------------ 213 (648)
...++++++.++.. ..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 275 (470)
T d2bgra1 196 PLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISL 275 (470)
T ss_dssp CEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEE
T ss_pred ceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeE
Confidence 11355555544320 00
Q ss_pred Eeeecccc--------------------------------------eeeeEeecCCE-EEEEeccCCCCCcEEEEEeCCC
Q 006375 214 VLTPRVVG--------------------------------------VDTAASHRGNH-FFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 214 ~l~~~~~~--------------------------------------~~~~~s~dg~~-l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
....+..+ ....++++++. +++.+..+ ...+|++++.++
T Consensus 276 ~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~d--g~~~ly~~~~~g 353 (470)
T d2bgra1 276 QWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE--GYRHICYFQIDK 353 (470)
T ss_dssp EEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTT--SCEEEEEEETTC
T ss_pred EEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccC--cCceeEEEeccC
Confidence 00000000 00112333433 33444432 345788888765
Q ss_pred CCcceeEecCCCCcccceEEEeCCEEEEEEecCC----eeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCccc
Q 006375 255 TSETTVLIPHRESVKLQDIQLFIDHLAVYEREGG----LQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFS 330 (648)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~ 330 (648)
+..+++...... ...-+.++++.+++.....+ ..+|+.++++. +.....|+.. +......+..+.+++|
T Consensus 354 -~~~~~lt~g~~~-v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g-~~~~~~lt~~----~~~~~~~~~s~~fSpd 426 (470)
T d2bgra1 354 -KDCTFITKGTWE-VIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSD-YTKVTCLSCE----LNPERCQYYSVSFSKE 426 (470)
T ss_dssp -SCCEESCCSSSC-EEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTC-TTCEEESSTT----TSTTTBCBEEEEECTT
T ss_pred -CceeeeccCCee-EEEEEEECCCEEEEEEecCCCCcceEEEEEEECCC-CCceeEeccc----ccCCCCCEEEEEECCC
Confidence 444434433322 23335667888887765433 23577777763 2333333311 1111112333566789
Q ss_pred ccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 331 SRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 331 ~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
+..++..++++..|. +..++..+++.
T Consensus 427 gky~~~~~s~~~~P~-~~l~~~~~g~~ 452 (470)
T d2bgra1 427 AKYYQLRCSGPGLPL-YTLHSSVNDKG 452 (470)
T ss_dssp SSEEEEEECSBSSCE-EEEEETTTTEE
T ss_pred CCEEEEEecCCCCCe-EEEEECCCCCE
Confidence 999999999999997 45667777773
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.43 E-value=3.3e-12 Score=125.27 Aligned_cols=126 Identities=18% Similarity=0.129 Sum_probs=87.9
Q ss_pred EEEEEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhc
Q 006375 377 ERKWASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYEN 456 (648)
Q Consensus 377 ~~~~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~ 456 (648)
+.-++++.||.+|.....-+ .+.|.||++||.+++... |..... ++.+||.|+++|.||.|.....
T Consensus 12 ~~~~v~~~dG~~i~y~~~G~-------~~g~pvvllHG~~~~~~~--w~~~~~-~l~~~~~vi~~D~rG~G~S~~~---- 77 (313)
T d1wm1a_ 12 DSGWLDTGDGHRIYWELSGN-------PNGKPAVFIHGGPGGGIS--PHHRQL-FDPERYKVLLFDQRGCGRSRPH---- 77 (313)
T ss_dssp EEEEEECSSSCEEEEEEEEC-------TTSEEEEEECCTTTCCCC--GGGGGG-SCTTTEEEEEECCTTSTTCBST----
T ss_pred cCCEEEeCCCcEEEEEEecC-------CCCCeEEEECCCCCcccc--hHHHHH-HhhcCCEEEEEeCCCccccccc----
Confidence 45567788999887653211 123668889997776554 343333 3457999999999998865321
Q ss_pred ccccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 457 GKFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 457 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
.........++.+.+..+..+. +..++.++|+|+||.++..++..+|++++.+++..+..
T Consensus 78 --~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~ 137 (313)
T d1wm1a_ 78 --ASLDNNTTWHLVADIERLREMA--GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFT 137 (313)
T ss_dssp --TCCTTCSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred --ccccccchhhHHHHHHhhhhcc--CCCcceeEeeecCCchhhHHHHHHhhhheeeeeccccc
Confidence 1222344566666666655543 34789999999999999999999999999988877644
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.38 E-value=1.6e-12 Score=123.96 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=70.3
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
.+.|+||++||..+.. ..|...+..|++.||.|+++|.||.|....... ....+...+...+.......
T Consensus 14 ~~~P~ivllHG~~~~~--~~~~~~~~~L~~~g~~vi~~Dl~G~G~s~~~~~---------~~~~~~~~~~~~~~~~~~~~ 82 (264)
T d1r3da_ 14 ARTPLVVLVHGLLGSG--ADWQPVLSHLARTQCAALTLDLPGHGTNPERHC---------DNFAEAVEMIEQTVQAHVTS 82 (264)
T ss_dssp TTBCEEEEECCTTCCG--GGGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCT
T ss_pred CCCCeEEEeCCCCCCH--HHHHHHHHHHHhCCCEEEEEecccccccccccc---------cccchhhhhhhhcccccccc
Confidence 4568999999976543 346777788888899999999999886533211 11122222233333333345
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCceeEEEec
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA 516 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~ 516 (648)
..++.++|+|+||.++..++.++|+.+..++..
T Consensus 83 ~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~ 115 (264)
T d1r3da_ 83 EVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGA 115 (264)
T ss_dssp TSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEE
T ss_pred cCceeeeeecchHHHHHHHHHhCchhccccccc
Confidence 579999999999999999999999877766644
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.32 E-value=2.6e-14 Score=142.12 Aligned_cols=221 Identities=13% Similarity=0.044 Sum_probs=118.3
Q ss_pred CCCcEEEEecCCCCCCCCCC-----CchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHH
Q 006375 404 GSDPLLLYGYGSYEICNDPA-----FNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIK 478 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~-----~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 478 (648)
++.| ||++||+++....+. +...++.|+++||.|+++|+||+|.++............. ++.+.+ .
T Consensus 57 ~~~P-vvllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~~~~~~~~~~----~~~~~l----~ 127 (318)
T d1qlwa_ 57 KRYP-ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKLGK----APASSL----P 127 (318)
T ss_dssp CSSC-EEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHTTS----SCGGGS----C
T ss_pred CCCc-EEEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccccCCHHHHHH----HHHHHH----H
Confidence 4567 566899887655443 2335688999999999999999998876543221111111 111111 1
Q ss_pred cCCCCCCeEEEEeeChhHHHHHHHHhhCCCc-eeEEEecCCcccccccccCCCCCC----------CcccccccCCCCCH
Q 006375 479 NCYCTKEKLCIEGRSAGGLLIGAVLNMRPDL-FKAAVAAVPFVDVLTTMLDPTIPL----------TTAEWEEWGDPWKE 547 (648)
Q Consensus 479 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~-~~a~v~~~~~~d~~~~~~~~~~~~----------~~~~~~~~g~~~~~ 547 (648)
.-.....++++.|+|+||.++..++...+.. ...+++..+..+............ .......+......
T Consensus 128 ~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (318)
T d1qlwa_ 128 DLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKLDGTVLLSHSQSGIY 207 (318)
T ss_dssp CCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHHTSEEEEEEGGGTTH
T ss_pred HHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHHHHHHHHhhhccccchhhhcccch
Confidence 1122345677889999998776666544321 111122111111111100000000 00000000000000
Q ss_pred HHHHHH---------------HcCCccccCCCCCCCeEEEeecCCCCccCCc-----hHHHHHHHHHhcCCCCCeEEEEe
Q 006375 548 EFYFYM---------------KSYSPVDNVKAQNYPHILVTAGLNDPRVMYS-----EPAKFVAKLREMKTDDNILLFKC 607 (648)
Q Consensus 548 ~~~~~~---------------~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~-----~~~~~~~~l~~~~~~~~~~~~~~ 607 (648)
...... ...++......+++| +|+++|++|+++|.+ ++..+++++++++.+.+++.++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~Lii~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~~~~~~~lp~ 286 (318)
T d1qlwa_ 208 PFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIP-VLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSLPA 286 (318)
T ss_dssp HHHHHHHCCTTEEEEEEESCSCCCCGGGCGGGTTSC-EEEEECSSCTTCTTTHHHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhhhhhhhhHHHHHHhhhcccccchhhhhhhccCC-EEEEecCcCcccChhhhHHHHHHHHHHHHHHhCCCcEEEEecc
Confidence 000000 012344556666888 999999999999964 45567888999998888777664
Q ss_pred c--CCCCccCCCch-HHHHHHHHHHHHHHHHh
Q 006375 608 E--LGAGHFSKSGR-FERLREAAFTYTFLMRA 636 (648)
Q Consensus 608 ~--~~~gH~~~~~~-~~~~~~~~~~~~fl~~~ 636 (648)
. .|+||+...+. .+.. ...+.+||.++
T Consensus 287 ~gi~G~gH~~~~e~~~~~v--a~~i~~wL~~~ 316 (318)
T d1qlwa_ 287 LGVHGNSHMMMQDRNNLQV--ADLILDWIGRN 316 (318)
T ss_dssp GTCCCCCTTGGGSTTHHHH--HHHHHHHHHHT
T ss_pred cccCCCcCccccCcCHHHH--HHHHHHHHHhc
Confidence 2 26789764433 2222 23578999886
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.32 E-value=1.4e-10 Score=112.19 Aligned_cols=164 Identities=8% Similarity=0.027 Sum_probs=101.3
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCe-EEEEEEEECCCCCeeeccccC--------ccceeEEecCC-eEEEEEeCCCC-CCc
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDE-IYTVYVIDIETGTPVGKPLVG--------VTASVEWAGNE-ALVYITMDEIL-RPD 151 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e-~~~l~v~dl~~g~~~~~~~~~--------~~~~~~WspDg-~l~y~~~~~~~-~~~ 151 (648)
...++|||||++|||+....+.+ ..+||++++.+|+....+... ....+.|+||| .|+|+...... ...
T Consensus 43 ~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 122 (281)
T d1k32a2 43 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMT 122 (281)
T ss_dssp EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCC
T ss_pred ccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccce
Confidence 46899999999999998766543 468999999999876543211 13458899999 88887553211 112
Q ss_pred eEEEEECCCCCC--------C-------cEEEEe-------------------------------ecCCCeEEEEEeCCC
Q 006375 152 KAWLHKLEADQS--------N-------DICLYH-------------------------------EKDDIYSLGLQASES 185 (648)
Q Consensus 152 ~l~~~~l~~~~~--------~-------~~~~~~-------------------------------~~~~~~~~~~~~s~D 185 (648)
.++..+..++.. . ...++. .........+.++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (281)
T d1k32a2 123 CLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH 202 (281)
T ss_dssp EEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT
T ss_pred eeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeecc
Confidence 222333222100 0 000000 000011112334443
Q ss_pred CcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCC
Q 006375 186 KKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNT 255 (648)
Q Consensus 186 g~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~ 255 (648)
.+++.....+..+||++|+++++ .++|+.........|||||+.|+|..+ .+|+++|+++.
T Consensus 203 --~~~~~~~~~~~~~l~~~d~~g~~-~~~lt~~~~~~~~~~SpDG~~I~f~~~------~~l~~~d~~~g 263 (281)
T d1k32a2 203 --RIYFITDIDGFGQIYSTDLDGKD-LRKHTSFTDYYPRHLNTDGRRILFSKG------GSIYIFNPDTE 263 (281)
T ss_dssp --EEEEEECTTSSCEEEEEETTSCS-CEECCCCCSSCEEEEEESSSCEEEEET------TEEEEECTTTC
T ss_pred --ccceecccccccceEEEeCCCCc-eEEeecCCCcccccCcCCCCEEEEEeC------CEEEEEECCCC
Confidence 45555555667899999999987 778876544333469999999999754 36999999873
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=8.1e-11 Score=122.91 Aligned_cols=213 Identities=13% Similarity=0.085 Sum_probs=136.2
Q ss_pred eeEEeCCCCCEEEEEEe-CCC----------------------------CeEEEEEEEECCCCCeeeccc-------cC-
Q 006375 84 GCFQVSPDNKLVAYAED-TKG----------------------------DEIYTVYVIDIETGTPVGKPL-------VG- 126 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~-~~G----------------------------~e~~~l~v~dl~~g~~~~~~~-------~~- 126 (648)
.++.|||||++|||..- ... +...+|+|+|++++....... ..
T Consensus 176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 255 (465)
T d1xfda1 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (465)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccc
Confidence 36789999999999852 111 113579999998876432111 11
Q ss_pred ccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeE----EEEEeCCCCcEEEEE--EccccccE
Q 006375 127 VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYS----LGLQASESKKFLFIA--SESKITRF 200 (648)
Q Consensus 127 ~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~s~Dg~~l~~~--~~~~~~~~ 200 (648)
....+.|+||+.+++...++......++.++..++. -..++++....|. ..+.|++||+.+++. +...+...
T Consensus 256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~--~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ 333 (465)
T d1xfda1 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV--CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (465)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC--EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc--EEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCc
Confidence 234588999997666666666666778899998873 4556665555442 246899999976654 33345577
Q ss_pred EEEEECCCC------CceeEeeeccccee--eeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEec---CCCCcc
Q 006375 201 VFYLDVSKP------EELRVLTPRVVGVD--TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIP---HRESVK 269 (648)
Q Consensus 201 l~~~dl~~~------~~~~~l~~~~~~~~--~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~ 269 (648)
+|.+.+... ...+.|+.+...+. ..|+.+++.|||.++.++....+||++++++....+.+.. +.....
T Consensus 334 ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~ 413 (465)
T d1xfda1 334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYF 413 (465)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCC
T ss_pred eEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEE
Confidence 887765321 12566776544432 3588999999999997655677899999987444332221 122222
Q ss_pred cceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 270 LQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 270 ~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
-..++++++++++.+..-+.+...+++..
T Consensus 414 ~~~~S~~~~y~v~~~s~~~~P~~~~~~~~ 442 (465)
T d1xfda1 414 SASFSHSMDFFLLKCEGPGVPMVTVHNTT 442 (465)
T ss_dssp EEEECTTSSEEEEECCSSSSCCEEEEETT
T ss_pred EEEECCCCCEEEEEeecCCCCeEEEEECC
Confidence 33455666777777766666777777654
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.28 E-value=1.1e-11 Score=120.53 Aligned_cols=118 Identities=7% Similarity=-0.015 Sum_probs=78.0
Q ss_pred CCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCC
Q 006375 385 DGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKN 464 (648)
Q Consensus 385 ~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~ 464 (648)
+|.+|... .. |+.|.||++||..+... .|...+..|+ ++|.|+++|.||.|.....-. ......
T Consensus 16 ~g~~i~y~-----~~----G~g~~vvllHG~~~~~~--~~~~~~~~L~-~~~~vi~~Dl~G~G~S~~~~~----~~~~~~ 79 (298)
T d1mj5a_ 16 KGRRMAYI-----DE----GTGDPILFQHGNPTSSY--LWRNIMPHCA-GLGRLIACDLIGMGDSDKLDP----SGPERY 79 (298)
T ss_dssp TTEEEEEE-----EE----SCSSEEEEECCTTCCGG--GGTTTGGGGT-TSSEEEEECCTTSTTSCCCSS----CSTTSS
T ss_pred CCEEEEEE-----EE----cCCCcEEEECCCCCCHH--HHHHHHHHHh-cCCEEEEEeCCCCCCCCCCcc----cccccc
Confidence 78877743 11 23478999999765443 3555555554 579999999999876533110 111122
Q ss_pred cHhHHHHHHHH-HHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 465 TFTDFIACAEY-LIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 465 ~~~D~~~~~~~-l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
...+..+.+.. +.... ..+++.++|+|+||.+++.++.++|+.++++++..+..
T Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~ 134 (298)
T d1mj5a_ 80 AYAEHRDYLDALWEALD--LGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 134 (298)
T ss_dssp CHHHHHHHHHHHHHHTT--CTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECC
T ss_pred ccchhhhhhcccccccc--ccccCeEEEecccchhHHHHHHHHHhhhheeecccccc
Confidence 33444444443 44433 34689999999999999999999999999988766543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.25 E-value=1.5e-10 Score=115.93 Aligned_cols=182 Identities=12% Similarity=0.079 Sum_probs=118.8
Q ss_pred EEeCC-CCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCC
Q 006375 86 FQVSP-DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQS 163 (648)
Q Consensus 86 ~~~SP-DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~ 163 (648)
..||| ||+++|+... | +|+++|+++++.+...-.+....++||||| .|++...+. ...|+.+++.++.
T Consensus 8 ~~fSP~dG~~~a~~~~--g----~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~---g~~v~v~d~~~~~- 77 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSR--G----QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE---GDFLGIYDYRTGK- 77 (360)
T ss_dssp EEEEECGGGCEEEEET--T----EEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETT---EEEEEEEETTTCC-
T ss_pred ccccCCCCCEEEEEEC--C----eEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCC---CCEEEEEECCCCc-
Confidence 57899 9999999864 4 799999999987765434445569999999 888877643 2348889998762
Q ss_pred CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc-c-eeeeEeecCCEEEEEeccC-
Q 006375 164 NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV-G-VDTAASHRGNHFFITRRSD- 240 (648)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~-~-~~~~~s~dg~~l~~~~~~~- 240 (648)
.+. +... ......+.|||||++|+.... ...++++++++++ ...+..... . ....|+|||++|++.....
T Consensus 78 -~~~-~~~~-~~~v~~~~~spdg~~l~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~ 150 (360)
T d1k32a3 78 -AEK-FEEN-LGNVFAMGVDRNGKFAVVAND---RFEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAYGFPLKH 150 (360)
T ss_dssp -EEE-CCCC-CCSEEEEEECTTSSEEEEEET---TSEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEEEEEECS
T ss_pred -EEE-eeCC-CceEEeeeecccccccceecc---ccccccccccccc-eeeeeecccccccchhhccceeeeeeeccccc
Confidence 222 2222 233446789999999987644 3578999999887 444433222 2 3456999999999887542
Q ss_pred ----CCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEe
Q 006375 241 ----ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYER 285 (648)
Q Consensus 241 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (648)
+.....+...++.+ +....+..+........++++++.+++...
T Consensus 151 ~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~s~ 198 (360)
T d1k32a3 151 GETDGYVMQAIHVYDMEG-RKIFAATTENSHDYAPAFDADSKNLYYLSY 198 (360)
T ss_dssp STTCSCCEEEEEEEETTT-TEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred cceeeccccceeeecccc-CceeeecccccccccccccCCCCEEEEEeC
Confidence 22345677788875 333323333333223334445556665543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.25 E-value=1.3e-10 Score=116.31 Aligned_cols=146 Identities=12% Similarity=0.092 Sum_probs=102.7
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+..++|||||++|+++....| ..|+++|+++++..... .......++|+||| .|++... ...++.+++.
T Consensus 44 ~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----~~~~~~~~~~ 115 (360)
T d1k32a3 44 RIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND-----RFEIMTVDLE 115 (360)
T ss_dssp CEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET-----TSEEEEEETT
T ss_pred CEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCcEEEeeCCCceEEeeeecccccccceecc-----cccccccccc
Confidence 4678999999999999987655 46999999999876532 22234569999999 7776543 2458888888
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccc-------cccEEEEEECCCCCceeEeeecccc-eeeeEeecCC
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESK-------ITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGN 231 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~-------~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~ 231 (648)
++. ...++.... .....+.|||||++|++..... ....++++|+.+++ ...++..... ....|+|||+
T Consensus 116 ~~~--~~~~~~~~~-~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~~~~~~~~~spdg~ 191 (360)
T d1k32a3 116 TGK--PTVIERSRE-AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK 191 (360)
T ss_dssp TCC--EEEEEECSS-SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred ccc--eeeeeeccc-ccccchhhccceeeeeeeccccccceeeccccceeeeccccCc-eeeecccccccccccccCCCC
Confidence 763 333443332 2334678999999999875432 23578899998876 5555443222 3356999999
Q ss_pred EEEEEecc
Q 006375 232 HFFITRRS 239 (648)
Q Consensus 232 ~l~~~~~~ 239 (648)
.|++.+.+
T Consensus 192 ~l~~~s~~ 199 (360)
T d1k32a3 192 NLYYLSYR 199 (360)
T ss_dssp EEEEEESC
T ss_pred EEEEEeCC
Confidence 99998764
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.21 E-value=9.1e-12 Score=121.62 Aligned_cols=128 Identities=16% Similarity=0.138 Sum_probs=81.6
Q ss_pred CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEec-CCc-ccccccccCCCCCCCcccccccCCCC--CHHHHHHHHc
Q 006375 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAA-VPF-VDVLTTMLDPTIPLTTAEWEEWGDPW--KEEFYFYMKS 555 (648)
Q Consensus 480 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~-~~~-~d~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~ 555 (648)
..+||+||+|+|+|+||+|+..++..+|+.|++.++. ++. ..... ...... ....+.+. .+........
T Consensus 6 y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~ca~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (318)
T d2d81a1 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCAR-----NQYYTS--CMYNGYPSITTPTANMKSWS 78 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTS-----SSCGGG--GSTTCCCCCHHHHHHHHHHB
T ss_pred cCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhhhc-----ccchHH--HhhcCCCCCcChhHHHHHHh
Confidence 4589999999999999999999999999999754332 221 11110 111000 00011111 2222223333
Q ss_pred CCccccCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccC
Q 006375 556 YSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFS 615 (648)
Q Consensus 556 ~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~ 615 (648)
.+.+..+.+...||+||+||++|.+||+.++.+++++|++.+.+.++ .+....++||..
T Consensus 79 ~~~i~~~~~~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~~~~~~v-~yv~~~gagH~f 137 (318)
T d2d81a1 79 GNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANV-SYVTTTGAVHTF 137 (318)
T ss_dssp TTTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGE-EEEEETTCCSSE
T ss_pred hcCCcchhccCCCCEEEEecCCCCCcCHHHHHHHHHHHHcCcCCCce-EEEEeCCCCCCC
Confidence 44444444444456999999999999999999999999987665553 444455899955
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=99.05 E-value=1.1e-09 Score=108.16 Aligned_cols=225 Identities=18% Similarity=0.195 Sum_probs=130.4
Q ss_pred CCCeEEe-EEEEEeeCcccc-CCCCcEEEEecCCCCCCCCC------C-CchhH---HHHHHCCCEEEEEccCCCCC--C
Q 006375 384 SDGTQIP-ICIVYRKNLVKL-DGSDPLLLYGYGSYEICNDP------A-FNSSR---LSLLDRGFIFAIAQIRGGGE--L 449 (648)
Q Consensus 384 ~~g~~i~-~~l~~~~~~~~~-~~~~P~vl~~hGg~~~~~~~------~-~~~~~---~~l~~~G~~v~~~~~rG~g~--~ 449 (648)
..|..++ +.+.|..=. .+ ..+.++||+.|+-.|..... + |...+ ..+=...|-|+++|+-|++. .
T Consensus 16 ~~G~~l~~~~laY~t~G-~ln~~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~~gSs 94 (357)
T d2b61a1 16 MLGGKLSYINVAYQTYG-TLNDEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTT 94 (357)
T ss_dssp TTSCEECSEEEEEEEES-CCCTTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSS
T ss_pred CCCCccCCceEEEEeec-ccCCCCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCccccC
Confidence 4455554 444443211 11 23458999999844433211 1 11111 22223569999999998653 1
Q ss_pred Chhhhh--cc---cccCCCCcHhHHHHHHHHHHHcCCCCCCeE-EEEeeChhHHHHHHHHhhCCCceeEEEecCCcc--c
Q 006375 450 GRQWYE--NG---KFLKKKNTFTDFIACAEYLIKNCYCTKEKL-CIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV--D 521 (648)
Q Consensus 450 g~~~~~--~~---~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~--d 521 (648)
|..-.. .+ ...-...++.|++.+-..|+++-.+ +|+ +|+|+||||+.++..+.++|+.+..+|+.++-. .
T Consensus 95 ~p~s~~p~tg~~~g~~FP~iti~D~v~aq~~Ll~~LGI--~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~~a~~s 172 (357)
T d2b61a1 95 GPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHLGI--SHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFS 172 (357)
T ss_dssp CTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHTTC--CCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCC
T ss_pred CcCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHhCc--ceEEEEecccHHHHHHHHHHHhhhHHHhhhcccccccccc
Confidence 211100 00 0122346889999999988876334 677 888999999999999999999999888776532 1
Q ss_pred cccc----------ccCC----------CCCCC--------------c-ccc-cccCCC---------------------
Q 006375 522 VLTT----------MLDP----------TIPLT--------------T-AEW-EEWGDP--------------------- 544 (648)
Q Consensus 522 ~~~~----------~~~~----------~~~~~--------------~-~~~-~~~g~~--------------------- 544 (648)
.... ..++ ..|.. . ..+ ..|+..
T Consensus 173 ~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~~~~~vesyL~~~ 252 (357)
T d2b61a1 173 AEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQ 252 (357)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCCCCCcccCCCchhHHHHHHHHHHhhccCHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence 0000 0011 11100 0 000 011110
Q ss_pred -------CCHHHHHHH----HcCCccc-------cCCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEE
Q 006375 545 -------WKEEFYFYM----KSYSPVD-------NVKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFK 606 (648)
Q Consensus 545 -------~~~~~~~~~----~~~sp~~-------~~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 606 (648)
.++..+-++ ..+++-. -++++++| +|++..+.|...|+++.++.++.|+.+++..+++.++
T Consensus 253 g~kf~~rfDan~yl~l~~a~~~~D~~~~~~~l~~aL~~I~a~-vLvi~~~sD~lFpp~~~~~~a~~l~~~~~~v~~~~I~ 331 (357)
T d2b61a1 253 GKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKAR-YTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFP 331 (357)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSE-EEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHhhCCHHHHHHHHHHhhhcccccccccHHHHHhhcCCC-EEEEEeCCccccCHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 122222111 1122211 15677887 9999999999999999999999999988877666665
Q ss_pred ecCCCCcc
Q 006375 607 CELGAGHF 614 (648)
Q Consensus 607 ~~~~~gH~ 614 (648)
...||-
T Consensus 332 --S~~GHd 337 (357)
T d2b61a1 332 --SDYGHD 337 (357)
T ss_dssp --CTTGGG
T ss_pred --CCCCcc
Confidence 356883
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.03 E-value=1.9e-07 Score=90.01 Aligned_cols=241 Identities=10% Similarity=0.029 Sum_probs=141.6
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 161 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~ 161 (648)
.++.+||||++|+.+...++ .|.++|+++++.+.. ........+.|++|+ .++..... ...++.+++.++
T Consensus 35 ~~va~spdG~~l~v~~~~~~----~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 106 (301)
T d1l0qa2 35 MGAVISPDGTKVYVANAHSN----DVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA----SSTLSVIDTTSN 106 (301)
T ss_dssp EEEEECTTSSEEEEEEGGGT----EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT----TTEEEEEETTTT
T ss_pred eEEEEeCCCCEEEEEECCCC----EEEEEECCCCceeeeeeccccccccccccccccccccccc----cceeeecccccc
Confidence 46899999999976655444 799999999987643 222223458999999 66554332 345677777765
Q ss_pred CCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEeccC
Q 006375 162 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITRRSD 240 (648)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~~~~ 240 (648)
+....... ........++|||+++++.... ...+++++..+.. .......... ....++++++.+++.....
T Consensus 107 --~~~~~~~~--~~~~~~~~~~~dg~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (301)
T d1l0qa2 107 --TVAGTVKT--GKSPLGLALSPDGKKLYVTNNG--DKTVSVINTVTKA-VINTVSVGRSPKGIAVTPDGTKVYVANFDS 179 (301)
T ss_dssp --EEEEEEEC--SSSEEEEEECTTSSEEEEEETT--TTEEEEEETTTTE-EEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred --eeeeeccc--cccceEEEeecCCCeeeeeecc--ccceeeeeccccc-eeeecccCCCceEEEeeccccceeeecccc
Confidence 22222222 2233456899999998876543 3567888888775 3333222222 2345889999887765531
Q ss_pred CCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCee
Q 006375 241 ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVY 320 (648)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~ 320 (648)
..+...+... ..............-..+..+++.+++.........++++++.. ++.. ..+....
T Consensus 180 ----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t-~~~~------~~~~~~~--- 244 (301)
T d1l0qa2 180 ----MSISVIDTVT-NSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-NKIT------ARIPVGP--- 244 (301)
T ss_dssp ----TEEEEEETTT-TEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT-TEEE------EEEECCS---
T ss_pred ----cccccccccc-eeeeecccccCCcceeeccccccccccccccceeeeeeeeecCC-CeEE------EEEcCCC---
Confidence 2455555543 22222332222211223444556777766665566889998873 2211 1222211
Q ss_pred eeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 321 SIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 321 ~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
.+..+..+++++.++++.+ .-.++..+|+++++.
T Consensus 245 ~~~~va~spdg~~l~va~~---~~~~i~v~D~~t~~~ 278 (301)
T d1l0qa2 245 DPAGIAVTPDGKKVYVALS---FCNTVSVIDTATNTI 278 (301)
T ss_dssp SEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEE
T ss_pred CEEEEEEeCCCCEEEEEEC---CCCeEEEEECCCCeE
Confidence 1233556788887655433 235799999999973
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=99.02 E-value=7.8e-09 Score=102.27 Aligned_cols=226 Identities=16% Similarity=0.205 Sum_probs=132.2
Q ss_pred CCCCeEEe-EEEEEeeCcccc-CCCCcEEEEecCCCCCCCC----------CCC-chh---HHHHHHCCCEEEEEccCCC
Q 006375 383 ASDGTQIP-ICIVYRKNLVKL-DGSDPLLLYGYGSYEICND----------PAF-NSS---RLSLLDRGFIFAIAQIRGG 446 (648)
Q Consensus 383 s~~g~~i~-~~l~~~~~~~~~-~~~~P~vl~~hGg~~~~~~----------~~~-~~~---~~~l~~~G~~v~~~~~rG~ 446 (648)
-..|..|+ +.+.|..-. .+ ..+.++||+.|+-.|.... +.| ... -..+-..-|-|+++|.-|+
T Consensus 18 le~G~~l~~~~l~Y~t~G-~ln~~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~ 96 (362)
T d2pl5a1 18 LNNGSVLSPVVIAYETYG-TLSSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGG 96 (362)
T ss_dssp CTTSCEESSEEEEEEEEE-CCCTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTC
T ss_pred cCCCCCcCCceEEEEeee-ccCCCCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccC
Confidence 34566664 555554321 11 2345899999985444321 111 111 1233335699999999987
Q ss_pred CCC--Chhhhhc--c---cccCCCCcHhHHHHHHHHHHHcCCCCCCeE-EEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 447 GEL--GRQWYEN--G---KFLKKKNTFTDFIACAEYLIKNCYCTKEKL-CIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 447 g~~--g~~~~~~--~---~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
+.. |..-... + .......++.|++++-..|.++-.+ +|+ +|+|+||||+.++..+.++|+.++.+|+.++
T Consensus 97 ~~~ss~~~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI--~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~ 174 (362)
T d2pl5a1 97 CKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGI--EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMAS 174 (362)
T ss_dssp SSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTC--SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESC
T ss_pred cccccCccccccccccccCcCCccchhHHHHHHHHHHHHHhCc--CeeEEEeehhHHHHHHHHHHHhCchHhhhhccccc
Confidence 632 2111000 0 0112335789999988888776444 455 4889999999999999999999999888775
Q ss_pred cccc----------cccc--cC---------CCCCC--------------C------------------------cccc-
Q 006375 519 FVDV----------LTTM--LD---------PTIPL--------------T------------------------TAEW- 538 (648)
Q Consensus 519 ~~d~----------~~~~--~~---------~~~~~--------------~------------------------~~~~- 538 (648)
-.-. .+.. .+ +..|. . ...|
T Consensus 175 sa~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~~~~~~~~~ve~yl 254 (362)
T d2pl5a1 175 TAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYL 254 (362)
T ss_dssp CSBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGG
T ss_pred ccccCHHHHHHHHHHHHHHhcCCccccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccccccchhHHHHHHH
Confidence 2210 0000 00 01110 0 0000
Q ss_pred cccCCC----CCHHHHHHH----HcCCcccc------CCCCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEE
Q 006375 539 EEWGDP----WKEEFYFYM----KSYSPVDN------VKAQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILL 604 (648)
Q Consensus 539 ~~~g~~----~~~~~~~~~----~~~sp~~~------~~~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 604 (648)
...|.. .++..+-++ ..+++-.+ +++++.| +|++..+.|...|+++.+++++.|..+++..+++.
T Consensus 255 ~~~g~k~~~rfDan~yl~l~~a~~~~Di~~~~~l~~aL~~I~Ak-vLvi~~~sD~lFpp~~~~~~a~~l~~a~~~v~~~e 333 (362)
T d2pl5a1 255 IYQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCR-FLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVE 333 (362)
T ss_dssp GSTTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSE-EEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhcCCHHHHHHHHhhhhcccccccccHHHHHhhCCCC-EEEEEeCcccCcCHHHHHHHHHHHHhCCCCeEEEE
Confidence 001111 233333222 22332222 5677887 99999999999999999999999999988765555
Q ss_pred EEecCCCCcc
Q 006375 605 FKCELGAGHF 614 (648)
Q Consensus 605 ~~~~~~~gH~ 614 (648)
++ ...||-
T Consensus 334 I~--S~~GHd 341 (362)
T d2pl5a1 334 LQ--SGEGHD 341 (362)
T ss_dssp EC--CCBSSG
T ss_pred eC--CCCCcc
Confidence 54 467884
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.02 E-value=1.2e-08 Score=106.43 Aligned_cols=115 Identities=12% Similarity=0.058 Sum_probs=74.1
Q ss_pred eCCCCc-EEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCC--CCCcEEEEEeCCCCCcc
Q 006375 182 ASESKK-FLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDE--LFNSELLACPVDNTSET 258 (648)
Q Consensus 182 ~s~Dg~-~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~--~~~~~l~~~~~~~~~~~ 258 (648)
+++++. ++++.+...+..+||+++++++. .+.++.+...+...++++++.+||+++..+ ....+||++++++....
T Consensus 326 ~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~-~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~ 404 (470)
T d2bgra1 326 FTLDGNSFYKIISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKV 404 (470)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCSC-CEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCE
T ss_pred eeecCCCcEEEEeccCcCceeEEEeccCCc-eeeeccCCeeEEEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCce
Confidence 344443 34445555566789999998887 777776655455457888999999987532 23458999999874433
Q ss_pred eeEec-----CCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 259 TVLIP-----HRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 259 ~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
+ +++ +.....-..|+++++++++.+.....+.+.+++..
T Consensus 405 ~-~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~ 448 (470)
T d2bgra1 405 T-CLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (470)
T ss_dssp E-ESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred e-EecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECC
Confidence 3 332 22222234466677787777776666667777665
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.00 E-value=3.4e-09 Score=108.11 Aligned_cols=120 Identities=15% Similarity=0.069 Sum_probs=87.0
Q ss_pred CCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchhHHHHHHCC------CEEEEEccCCCCCCChhhhhcc
Q 006375 384 SDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSSRLSLLDRG------FIFAIAQIRGGGELGRQWYENG 457 (648)
Q Consensus 384 ~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G------~~v~~~~~rG~g~~g~~~~~~~ 457 (648)
-||.+|+...+. .. .+..|.||++||-+++.. .|...+..|++.| |.|++||.||-|.+.+.
T Consensus 89 i~G~~iHf~h~~--~~---~~~~~pLlLlHG~P~s~~--~w~~vi~~La~~g~~~~~~f~VIaPDLpG~G~S~~P----- 156 (394)
T d1qo7a_ 89 IEGLTIHFAALF--SE---REDAVPIALLHGWPGSFV--EFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGP----- 156 (394)
T ss_dssp ETTEEEEEEEEC--CS---CTTCEEEEEECCSSCCGG--GGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCC-----
T ss_pred ECCEEEEEEEEe--cc---CCCCCEEEEeccccccHH--HHHHHHHhhccccCCcccceeeecccccccCCCCCC-----
Confidence 389888864332 21 234678999999877654 4677788888888 99999999988765432
Q ss_pred cccCCCCcHhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 458 KFLKKKNTFTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 458 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
.......+.++.+.+..|...- ...+..++|+|+||.++..++..+|+.+.++++...
T Consensus 157 -~~~~~y~~~~~a~~~~~l~~~l--g~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~ 214 (394)
T d1qo7a_ 157 -PLDKDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLC 214 (394)
T ss_dssp -CSSSCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred -CCCCccCHHHHHHHHHHHHhhc--cCcceEEEEecCchhHHHHHHHHhhccccceeEeee
Confidence 1122345677777777776653 236889999999999999999999998888776643
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=9.8e-10 Score=104.59 Aligned_cols=98 Identities=15% Similarity=0.216 Sum_probs=72.0
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHC--CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDR--GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~--G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
.| ||++||..++. ..|...+..|.+. ||.|+++|.||.|...+. ....++++...+..++++. +
T Consensus 3 ~P-vvllHG~~~~~--~~~~~~~~~l~~~~~~~~v~~~d~~G~g~S~~~---------~~~~~~~~~~~l~~~l~~l--~ 68 (268)
T d1pjaa_ 3 KP-VIVVHGLFDSS--YSFRHLLEYINETHPGTVVTVLDLFDGRESLRP---------LWEQVQGFREAVVPIMAKA--P 68 (268)
T ss_dssp CC-EEEECCTTCCG--GGGHHHHHHHHHHSTTCCEEECCSSCSGGGGSC---------HHHHHHHHHHHHHHHHHHC--T
T ss_pred CC-EEEECCCCCCH--HHHHHHHHHHHhhCCCeEEEEeCCCCCCCCCCc---------cccCHHHHHHHHHHHHhcc--C
Confidence 35 56789965544 3466667777764 899999999997754321 1134566666666666543 3
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCC-ceeEEEecCC
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAVP 518 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~-~~~a~v~~~~ 518 (648)
+++.++|+||||.++..+|.++|+ .++.+|+..+
T Consensus 69 -~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~ 103 (268)
T d1pjaa_ 69 -QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 103 (268)
T ss_dssp -TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESC
T ss_pred -CeEEEEccccHHHHHHHHHHHCCccccceEEEECC
Confidence 799999999999999999999998 5898887765
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=98.96 E-value=1.9e-09 Score=96.76 Aligned_cols=155 Identities=15% Similarity=0.065 Sum_probs=98.0
Q ss_pred CcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCCCC
Q 006375 406 DPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCTKE 485 (648)
Q Consensus 406 ~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 485 (648)
.|+ |++||..+.. ..|......|.++||.++.++.+|.+.....-. ...+++.+.++.+.++ ...+
T Consensus 3 ~PV-v~vHG~~~~~--~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~i~~~~~~--~~~~ 68 (179)
T d1ispa_ 3 NPV-VMVHGIGGAS--FNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNY---------NNGPVLSRFVQKVLDE--TGAK 68 (179)
T ss_dssp CCE-EEECCTTCCG--GGGHHHHHHHHHTTCCGGGEEECCCSCTTCCHH---------HHHHHHHHHHHHHHHH--HCCS
T ss_pred CCE-EEECCCCCCH--HHHHHHHHHHHHcCCeEEEEecCCccccccccc---------hhhhhHHHHHHHHHHh--cCCc
Confidence 465 5689965433 346777788999999999999887664322111 1235666666666654 2347
Q ss_pred eEEEEeeChhHHHHHHHHhhC--CCceeEEEecCCcccccccccCCCCCCCcccccccCCCCCHHHHHHHHcCCccccCC
Q 006375 486 KLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPWKEEFYFYMKSYSPVDNVK 563 (648)
Q Consensus 486 ~i~i~G~S~GG~l~~~~~~~~--p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~ 563 (648)
++.++||||||.++..++.++ |++++.+|+.++........ .++ +. ..
T Consensus 69 ~v~lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~~---~l~---------~~------------------~~ 118 (179)
T d1ispa_ 69 KVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGK---ALP---------GT------------------DP 118 (179)
T ss_dssp CEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSB---CCC---------CS------------------CT
T ss_pred eEEEEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchhh---hcC---------Cc------------------cc
Confidence 899999999999999888776 67899998876542211000 000 00 01
Q ss_pred CCCCCeEEEeecCCCCccCCchHHHHHHHHHhcCCCCCeEEEEecCCCCccCCC
Q 006375 564 AQNYPHILVTAGLNDPRVMYSEPAKFVAKLREMKTDDNILLFKCELGAGHFSKS 617 (648)
Q Consensus 564 ~~~~P~~li~~g~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~ 617 (648)
....| ++.++|..|..|++..+. +. + .+.+.++ +.+|....
T Consensus 119 ~~~~~-~~~i~~~~D~~v~~~~~~-----l~--~--~~~~~~~---~~~H~~l~ 159 (179)
T d1ispa_ 119 NQKIL-YTSIYSSADMIVMNYLSR-----LD--G--ARNVQIH---GVGHIGLL 159 (179)
T ss_dssp TCCCE-EEEEEETTCSSSCHHHHC-----CB--T--SEEEEES---SCCTGGGG
T ss_pred ccCce-EEEEEecCCcccCchhhc-----CC--C--ceEEEEC---CCCchhhc
Confidence 12344 999999999999875431 11 1 2334554 78996543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.93 E-value=1.3e-07 Score=94.02 Aligned_cols=122 Identities=14% Similarity=0.026 Sum_probs=76.4
Q ss_pred EeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCCC-----CCCceEEEEECCC
Q 006375 87 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEI-----LRPDKAWLHKLEA 160 (648)
Q Consensus 87 ~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~-----~~~~~l~~~~l~~ 160 (648)
.+||||++++++....+.-..+|||+|+++|+.+.....+....++||||| .|++...... .+...|+.+++.+
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t 87 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 87 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence 469999999655444444467899999999987653222333469999999 7766543211 1234588889888
Q ss_pred CCCCcEEEEeecCCCe-----EEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 161 DQSNDICLYHEKDDIY-----SLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 161 ~~~~~~~~~~~~~~~~-----~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
+.... .+........ ...+.+++||+++++... .....+++++..+++
T Consensus 88 ~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-~~~~~~~~~~~~~~~ 140 (355)
T d2bbkh_ 88 LLPTA-DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAPAVGVVDLEGKA 140 (355)
T ss_dssp CCEEE-EEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSCEEEEEETTTTE
T ss_pred CCEEE-EEecCCcceeecCCCCceEEEecCCCeeEEecC-CCCceeeeeecCCCc
Confidence 73222 1211111111 123579999999987543 334667888887765
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.91 E-value=3.9e-07 Score=91.16 Aligned_cols=162 Identities=11% Similarity=-0.047 Sum_probs=94.5
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCCC-----CCCceEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEI-----LRPDKAWLH 156 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~-----~~~~~l~~~ 156 (648)
.....+||||++++++.....+...+||++|.++++.+.....+....++||||| .|++...... .+...|..+
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~ 102 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEE
Confidence 3456789999999877554433356899999999998753222233359999999 7777654322 234568888
Q ss_pred ECCCCCCCcEEEEeecC-CCe-----EEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecC
Q 006375 157 KLEADQSNDICLYHEKD-DIY-----SLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRG 230 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~-~~~-----~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg 230 (648)
++.+++. ......+. ... ...+.+++||+.+++.... ..+.+.+++..+.+ ..... .......++++|
T Consensus 103 D~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~-~~~~~~~~~~~~~~-~~~~~--~~~~~~~~s~~g 176 (373)
T d2madh_ 103 DPVTFLP--IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA-AGPAVGLVVQGGSS-DDQLL--SSPTCYHIHPGA 176 (373)
T ss_pred ECCCCcE--EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc-CCCceEEeeccCCe-EEEEe--ccceeEEEecCC
Confidence 8887732 21111111 111 1235789999988775433 23455666666554 22111 111234477888
Q ss_pred CEEEEEeccCCCCCcEEEEEeCCC
Q 006375 231 NHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 231 ~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
+.+++....+ ..+.+++...
T Consensus 177 ~~~~v~~~~d----g~~~~~~~~~ 196 (373)
T d2madh_ 177 PSTFYLLCAQ----GGLAKTDHAG 196 (373)
T ss_pred CcEEEEEcCC----CeEEEEEcCC
Confidence 7765554432 2455555543
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=98.91 E-value=7.1e-09 Score=103.13 Aligned_cols=135 Identities=10% Similarity=0.109 Sum_probs=86.5
Q ss_pred EeCCCCeEEe-EEEEEeeCcccc-CCCCcEEEEecCCCCCCCCCCC-chhH---HHHHHCCCEEEEEccCCCCC--CChh
Q 006375 381 ASASDGTQIP-ICIVYRKNLVKL-DGSDPLLLYGYGSYEICNDPAF-NSSR---LSLLDRGFIFAIAQIRGGGE--LGRQ 452 (648)
Q Consensus 381 ~~s~~g~~i~-~~l~~~~~~~~~-~~~~P~vl~~hGg~~~~~~~~~-~~~~---~~l~~~G~~v~~~~~rG~g~--~g~~ 452 (648)
|+...|..|+ +.+.|..=. .+ ..+.++||+.|+-.+.+...+| ...+ ..+=..-|-|+++|+-|++. .|..
T Consensus 18 F~le~G~~l~~~~laY~t~G-~ln~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~~gst~p~ 96 (376)
T d2vata1 18 FTLESGVILRDVPVAYKSWG-RMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSAGPC 96 (376)
T ss_dssp EECTTSCEEEEEEEEEEEES-CCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSSSTT
T ss_pred EEeCCCCCcCCceEEEEeec-ccCCCCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCCcCCCCCC
Confidence 4456677674 565554322 21 2456899999996555543332 2111 23333579999999998752 1111
Q ss_pred hhh---ccc----ccCCCCcHhHHHHHHHHHHHcCCCCCCeE-EEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 453 WYE---NGK----FLKKKNTFTDFIACAEYLIKNCYCTKEKL-CIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 453 ~~~---~~~----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
-.. .+. ..-...++.|++.+-..|.++-.+ +|+ +|+|+||||+.|+..+.++|+++..+|+.+.
T Consensus 97 s~~p~~~~~~~yg~~FP~~ti~D~v~aq~~ll~~LGI--~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~ 168 (376)
T d2vata1 97 SPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRLGV--RQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIAT 168 (376)
T ss_dssp SBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHHHTC--CCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESC
T ss_pred CCCcccccCCcccccCCcchhHHHHHHHHHHHHHhCc--ceEEEeecccHHHHHHHHHHHhchHHHhhhccccc
Confidence 110 000 122346889999998777765333 566 7899999999999999999999988887765
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.89 E-value=4.8e-07 Score=88.47 Aligned_cols=245 Identities=9% Similarity=-0.019 Sum_probs=134.8
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 161 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~ 161 (648)
.+.+||||+.|||.. |+ .++++|+++++....-. .+....++|+||| .|+ +... ...|..+++.+.
T Consensus 22 ~~a~~~~g~~l~~~~---~~---~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~la-tg~~----dg~i~iwd~~~~ 90 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCN---GT---SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA-SGDV----HGNVRIWDTTQT 90 (311)
T ss_dssp CCEECTTSSEEEEEE---TT---EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEE-EEET----TSEEEEEESSST
T ss_pred EEEEcCCCCEEEEEe---CC---EEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEe-cccc----CceEeeeeeecc
Confidence 457899999999974 32 58899999876653211 2334569999999 554 4432 235888888876
Q ss_pred CCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEEeccC
Q 006375 162 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSD 240 (648)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~~~~ 240 (648)
.......+.... .....+.|+||+++|+..+... ...+.++++++++....+......+ ...|+|+|+.+++....+
T Consensus 91 ~~~~~~~~~~~~-~~v~~v~~s~d~~~l~~~~~~~-~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d 168 (311)
T d1nr0a1 91 THILKTTIPVFS-GPVKDISWDSESKRIAAVGEGR-ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 168 (311)
T ss_dssp TCCEEEEEECSS-SCEEEEEECTTSCEEEEEECCS-SCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred cccccccccccc-Cccccccccccccccccccccc-cccccccccccccccccccccccccccccccccceeeecccccc
Confidence 433333343332 2344688999999987654332 2335666777765223333333333 245899998755544432
Q ss_pred CCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCe
Q 006375 241 ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPV 319 (648)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~ 319 (648)
..|...|+++. ......... ...+..+.+.++ .+++....++ .+.++++... .....+... ........
T Consensus 169 ----~~i~i~d~~~~-~~~~~~~~~-~~~i~~v~~~p~~~~l~~~~~d~--~v~~~d~~~~-~~~~~~~~~-~~~~~~h~ 238 (311)
T d1nr0a1 169 ----NTVAIFEGPPF-KFKSTFGEH-TKFVHSVRYNPDGSLFASTGGDG--TIVLYNGVDG-TKTGVFEDD-SLKNVAHS 238 (311)
T ss_dssp ----SCEEEEETTTB-EEEEEECCC-SSCEEEEEECTTSSEEEEEETTS--CEEEEETTTC-CEEEECBCT-TSSSCSSS
T ss_pred ----ccccccccccc-ccccccccc-cccccccccCccccccccccccc--cccccccccc-ccccccccc-cccccccc
Confidence 35777788752 222233222 223556666554 2333333343 4677777642 211111110 00111111
Q ss_pred eeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 320 YSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 320 ~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
..|..+.++++++.+ ++. +. -..++.+|..+++
T Consensus 239 ~~V~~~~~s~~~~~l-~tg-s~--Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 239 GSVFGLTWSPDGTKI-ASA-SA--DKTIKIWNVATLK 271 (311)
T ss_dssp SCEEEEEECTTSSEE-EEE-ET--TSEEEEEETTTTE
T ss_pred ccccccccCCCCCEE-EEE-eC--CCeEEEEECCCCc
Confidence 123334556677643 333 32 2479999999887
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=98.87 E-value=2.1e-09 Score=100.48 Aligned_cols=81 Identities=10% Similarity=0.043 Sum_probs=58.5
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
++.|+||++||+.+.. ..|...+..| .+|.|..+|++|.++ ..+++.+++..+. .
T Consensus 15 ~~~~~l~~lhg~~g~~--~~~~~la~~L--~~~~v~~~~~~g~~~----------------~a~~~~~~i~~~~-----~ 69 (230)
T d1jmkc_ 15 DQEQIIFAFPPVLGYG--LMYQNLSSRL--PSYKLCAFDFIEEED----------------RLDRYADLIQKLQ-----P 69 (230)
T ss_dssp TCSEEEEEECCTTCCG--GGGHHHHHHC--TTEEEEEECCCCSTT----------------HHHHHHHHHHHHC-----C
T ss_pred CCCCeEEEEcCCCCCH--HHHHHHHHHC--CCCEEeccCcCCHHH----------------HHHHHHHHHHHhC-----C
Confidence 3468999999977654 3366555555 379999999997643 2356665555432 2
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCCc
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPDL 509 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~~ 509 (648)
..++.++|+||||.++..++.+.|++
T Consensus 70 ~~~~~lvGhS~GG~vA~~~A~~~~~~ 95 (230)
T d1jmkc_ 70 EGPLTLFGYSAGCSLAFEAAKKLEGQ 95 (230)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEeeccChHHHHHHHHhhhhh
Confidence 36799999999999999988876654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.84 E-value=2.7e-06 Score=87.13 Aligned_cols=173 Identities=11% Similarity=0.098 Sum_probs=102.6
Q ss_pred CceEEEecccccC----CCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccc------cCccceeE
Q 006375 64 PEHLILDENVKAE----GRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPL------VGVTASVE 132 (648)
Q Consensus 64 ~~~~lld~n~~~~----~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~------~~~~~~~~ 132 (648)
+...|+|+.+... ..|. .+..+++|||||+|+.+ +.+| .|.++|+++++... ..+ .+...++.
T Consensus 42 g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~-s~dg----~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~ 115 (432)
T d1qksa2 42 GQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVI-GRDG----KVNMIDLWMKEPTTVAEIKIGSEARSIETSKM 115 (432)
T ss_dssp TEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEE-ETTS----EEEEEETTSSSCCEEEEEECCSEEEEEEECCS
T ss_pred CEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEE-cCCC----CEEEEEeeCCCceEEEEEecCCCCCCeEEecc
Confidence 4456677655321 0222 36688999999999655 4444 78999999877431 111 11223356
Q ss_pred EecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeec----------CCCeEEEEEeCCCCcEEEEEEccccccEE
Q 006375 133 WAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEK----------DDIYSLGLQASESKKFLFIASESKITRFV 201 (648)
Q Consensus 133 WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 201 (648)
||||| +++.+... ...|.+++..+++ ....+... .......+..|+||+.++++.. ....+
T Consensus 116 ~SpDG~~l~vs~~~----~~~v~i~d~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~--~~~~i 187 (432)
T d1qksa2 116 EGWEDKYAIAGAYW----PPQYVIMDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK--ETGKI 187 (432)
T ss_dssp TTCTTTEEEEEEEE----TTEEEEEETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET--TTTEE
T ss_pred cCCCCCEEEEEcCC----CCeEEEEeCcccc--ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc--cCCeE
Confidence 78899 66555442 3457888887763 22222211 0112234678999998877543 35789
Q ss_pred EEEECCCCCc--eeEeeecccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 202 FYLDVSKPEE--LRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 202 ~~~dl~~~~~--~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
++++..+.+. ...+.....-....++|||++++..++.. ..+...+.+.
T Consensus 188 ~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~----~~v~v~d~~~ 238 (432)
T d1qksa2 188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR----NKLVVIDTKE 238 (432)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG----TEEEEEETTT
T ss_pred EEEEccCCCcceEEEEcccCccccceECCCCCEEEEecccc----ceEEEeeccc
Confidence 9999888761 12222222223456999999888777652 2566666654
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.81 E-value=7.9e-09 Score=101.83 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=75.7
Q ss_pred CCCcEEEEecCCCCCCCCC----CCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHc
Q 006375 404 GSDPLLLYGYGSYEICNDP----AFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKN 479 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~----~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 479 (648)
.++|+| ++||.++..... .|......|.++||.|+++|+||.|.... .....+++.+.++.+++.
T Consensus 7 ~k~Pvv-lvHG~~g~~~~~~~~~~~~~~~~~L~~~G~~V~~~~~~g~g~s~~----------~~~~~~~l~~~i~~~~~~ 75 (319)
T d1cvla_ 7 TRYPVI-LVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDG----------PNGRGEQLLAYVKQVLAA 75 (319)
T ss_dssp CSSCEE-EECCTTBSSEETTTEESSTTHHHHHHHTTCCEEECCCBCSSCTTS----------TTSHHHHHHHHHHHHHHH
T ss_pred CCCCEE-EECCCCCCcchhhhhhhHHHHHHHHHHCCCEEEEecCCCCCCCCC----------CcccHHHHHHHHHHHHHH
Confidence 457855 579965543221 35666788999999999999998764321 112346777777766654
Q ss_pred CCCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 480 CYCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 480 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
.+.++|.++||||||.++..++.++|++++.+|..++
T Consensus 76 --~~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~ 112 (319)
T d1cvla_ 76 --TGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGT 112 (319)
T ss_dssp --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred --hCCCCEEEEeccccHHHHHHHHHHCccccceEEEECC
Confidence 2348999999999999999999999999999998765
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=7.6e-09 Score=109.99 Aligned_cols=126 Identities=16% Similarity=0.177 Sum_probs=87.4
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCC-CCCchhHHHHHHCCCEEEEEccCCCC-CCChhhhhcccc-cCCCCc
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSLLDRGFIFAIAQIRGGG-ELGRQWYENGKF-LKKKNT 465 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l~~~G~~v~~~~~rG~g-~~g~~~~~~~~~-~~~~~~ 465 (648)
+.+.++.|+.. ..+.+.|++|++|||...... ..+.. ...++.++.+|+.+|||-+- |+- ..+.. ..+-..
T Consensus 97 L~LnI~~P~~~-~~~~~lPV~v~ihGG~~~~gs~~~~~~-~~~~~~~~vIvVt~nYRLg~~GFl----~~~~~~~~gN~G 170 (532)
T d2h7ca1 97 LYLNIYTPADL-TKKNRLPVMVWIHGGGLMVGAASTYDG-LALAAHENVVVVTIQYRLGIWGFF----STGDEHSRGNWG 170 (532)
T ss_dssp CEEEEEECSCT-TSCCCEEEEEEECCSTTTSCCSTTSCC-HHHHHHHTCEEEEECCCCHHHHHC----CCSSTTCCCCHH
T ss_pred CEEEEEECCCC-CCCCCcEEEEEEeCCcccccccccCCc-hhhhhcCceEEEEEeeccCCCccc----cccccccccccc
Confidence 55555667654 456779999999997443322 22332 33456789999999999642 221 11111 111236
Q ss_pred HhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhh--CCCceeEEEecCCcc
Q 006375 466 FTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPFV 520 (648)
Q Consensus 466 ~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~~~a~v~~~~~~ 520 (648)
+.|.+.|++|++++ -.-||++|.|+|+|+||..+..++.. ...+|+.+|+.+|..
T Consensus 171 l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~ 230 (532)
T d2h7ca1 171 HLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA 230 (532)
T ss_dssp HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred cHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence 89999999999876 34699999999999999988777663 234899999999754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.76 E-value=9.2e-07 Score=88.52 Aligned_cols=147 Identities=10% Similarity=-0.083 Sum_probs=87.5
Q ss_pred EeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCC-----CCCCceEEEEECCC
Q 006375 87 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDE-----ILRPDKAWLHKLEA 160 (648)
Q Consensus 87 ~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~-----~~~~~~l~~~~l~~ 160 (648)
..+|||+..........+...+||++|.++++.+.....+....++|+||| .|++..... ..+...|..++..+
T Consensus 26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t 105 (368)
T d1mdah_ 26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT 105 (368)
T ss_dssp CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred ccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCC
Confidence 468888876555433222257899999999998754333334469999999 777655321 12334588899888
Q ss_pred CCCCcEEEEeecCC-Ce-----EEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec---------ccceeee
Q 006375 161 DQSNDICLYHEKDD-IY-----SLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR---------VVGVDTA 225 (648)
Q Consensus 161 ~~~~~~~~~~~~~~-~~-----~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~---------~~~~~~~ 225 (648)
.+. ......+.. .. -..+.+||||++|++.... ...++++|+.+++ .....+. .....+.
T Consensus 106 ~~~--~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~--~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~ 180 (368)
T d1mdah_ 106 FLP--IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG--SSAAAGLSVPGAS-DDQLTKSASCFHIHPGAAATHYL 180 (368)
T ss_dssp CCE--EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS--SSCEEEEEETTTE-EEEEEECSSCCCCEEEETTEEEC
T ss_pred CcE--eeeecCCccceecccCCccceEECCCCCEEEEEeCC--CCeEEEEECCCCc-EeEEeeccCcceEccCCCceEEE
Confidence 732 222221111 11 1246899999999875432 3568889998876 3222111 1112234
Q ss_pred EeecCCEEEEEec
Q 006375 226 ASHRGNHFFITRR 238 (648)
Q Consensus 226 ~s~dg~~l~~~~~ 238 (648)
+++||+.+++...
T Consensus 181 ~~~Dg~~~~~~~~ 193 (368)
T d1mdah_ 181 GSCPASLAASDLA 193 (368)
T ss_dssp CCCTTSCEEEECC
T ss_pred EcCCCCEEEEEec
Confidence 6778876666543
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.72 E-value=2e-08 Score=106.20 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=85.7
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCC-CCCCCCCchhHHHHH-HCCCEEEEEccCCCC-CCChhhhhcccccCCCCc
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYE-ICNDPAFNSSRLSLL-DRGFIFAIAQIRGGG-ELGRQWYENGKFLKKKNT 465 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~-~~~~~~~~~~~~~l~-~~G~~v~~~~~rG~g-~~g~~~~~~~~~~~~~~~ 465 (648)
+.+.++.|+.. ..+.+.|++|++|||.. ......+......++ ..+.+|+.+|||-+- |+-.. .........=..
T Consensus 81 L~LnI~~P~~~-~~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~~GFl~~-~~~~~~~~~N~G 158 (517)
T d1ukca_ 81 LFINVFKPSTA-TSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLAS-EKVRQNGDLNAG 158 (517)
T ss_dssp CEEEEEEETTC-CTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCC-HHHHHSSCTTHH
T ss_pred CEEEEEeCCCC-CCCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccceeecCc-cccccccccchh
Confidence 45555667654 34567899999999743 223333444344444 457899999999632 22100 000000111236
Q ss_pred HhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhC----CCceeEEEecCCcc
Q 006375 466 FTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR----PDLFKAAVAAVPFV 520 (648)
Q Consensus 466 ~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~----p~~~~a~v~~~~~~ 520 (648)
+.|.+.|++|++++ -.-||++|.|+|+|+||..+.+.+... ..+|+.+|+.+|..
T Consensus 159 l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~ 220 (517)
T d1ukca_ 159 LLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 220 (517)
T ss_dssp HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred HHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccccc
Confidence 89999999999876 346999999999999999887766531 23899999999864
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.70 E-value=9.4e-09 Score=107.80 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=84.5
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCCC-CCchhHHHH-HHCCCEEEEEccCCCC-CCChhhhhccccc-CCCC
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDP-AFNSSRLSL-LDRGFIFAIAQIRGGG-ELGRQWYENGKFL-KKKN 464 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~-~~~~~~~~l-~~~G~~v~~~~~rG~g-~~g~~~~~~~~~~-~~~~ 464 (648)
+.+.++.|+.. ++++|++|++|||....... .+......+ .+.+.+|+.+|||-+- |+-. ....... .+=.
T Consensus 82 L~lni~~P~~~---~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vVvV~~nYRlg~~GFl~--~~~~~~~~~gN~ 156 (483)
T d1qe3a_ 82 LYVNVFAPDTP---SQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLH--LSSFDEAYSDNL 156 (483)
T ss_dssp CEEEEEEECSS---CCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCC--CTTTCTTSCSCH
T ss_pred CEEEEEECCCC---CCCCceEEEEeecccccCCccccccccccccccCceEEEeecccccchhhcc--cccccccccccc
Confidence 55555667543 46799999999984332222 122222333 4457999999999643 2210 0111111 1113
Q ss_pred cHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 006375 465 TFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFV 520 (648)
Q Consensus 465 ~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~~~a~v~~~~~~ 520 (648)
.+.|.+.|++|++++ -.-||++|.|+|+|+||..+..++... ..+|+.+|+.+|..
T Consensus 157 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 157 GLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred ccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 689999999999876 336999999999999999988877742 24899999999854
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.69 E-value=5.9e-09 Score=110.80 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=85.6
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCC-CCCchhH----HHHHHCCCEEEEEccCCCC-CCCh--hhhhccccc
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSR----LSLLDRGFIFAIAQIRGGG-ELGR--QWYENGKFL 460 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~----~~l~~~G~~v~~~~~rG~g-~~g~--~~~~~~~~~ 460 (648)
+.+.++.|+.. ..+.++|++|++|||...... ..|.... ..++.++++|+.+|||.+- |+-. .-... .
T Consensus 98 L~LnI~~P~~~-~~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~~---~ 173 (534)
T d1llfa_ 98 LTINVVRPPGT-KAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKAE---G 173 (534)
T ss_dssp CEEEEEECTTC-CTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHHH---T
T ss_pred CEEEEEECCCC-CCCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCcccccCCcccccc---c
Confidence 55566677655 556789999999997533222 2233222 2345679999999999643 2211 11111 1
Q ss_pred CCCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhh-----CC---CceeEEEecCCc
Q 006375 461 KKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM-----RP---DLFKAAVAAVPF 519 (648)
Q Consensus 461 ~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~-----~p---~~~~a~v~~~~~ 519 (648)
.+-..+.|.+.|++|++++ -.-||++|.|+|+|+||..+.+.+.. .| .+|+.+|+.+|.
T Consensus 174 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 174 SGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred ccccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 2224789999999999886 23699999999999999988766641 12 279999999974
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=98.66 E-value=5.4e-08 Score=94.24 Aligned_cols=103 Identities=16% Similarity=0.007 Sum_probs=74.2
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
.+.| ||++||.........|......|.++||.|+.+|++|.|... .+...+++.++++++.+.- .
T Consensus 30 ~~~P-VvlvHG~~~~~~~~~~~~~~~~L~~~Gy~v~~~d~~g~g~~d-----------~~~sae~la~~i~~v~~~~--g 95 (317)
T d1tcaa_ 30 VSKP-ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFMLND-----------TQVNTEYMVNAITALYAGS--G 95 (317)
T ss_dssp CSSE-EEEECCTTCCHHHHHTTTHHHHHHTTTCEEEEECCTTTTCSC-----------HHHHHHHHHHHHHHHHHHT--T
T ss_pred CCCc-EEEECCCCCCCcchhHHHHHHHHHhCCCeEEEecCCCCCCCc-----------hHhHHHHHHHHHHHHHHhc--c
Confidence 3456 567899443332222445567888999999999999765321 1133478889999987763 3
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCC---ceeEEEecCCcc
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPD---LFKAAVAAVPFV 520 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~---~~~a~v~~~~~~ 520 (648)
.++|.|+||||||+++.+++.++|+ +++.+|...|..
T Consensus 96 ~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~~ 135 (317)
T d1tcaa_ 96 NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDY 135 (317)
T ss_dssp SCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCT
T ss_pred CCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCCC
Confidence 3789999999999999999998884 588888777643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=2.4e-06 Score=83.31 Aligned_cols=254 Identities=15% Similarity=0.081 Sum_probs=119.6
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCC--eeec---cccCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGT--PVGK---PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~--~~~~---~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
+..+.|||||++|+.+...++ .|.+++++++. .... ........++|+||| .++....+ ...+..+
T Consensus 39 v~~la~spDG~~L~v~~~~d~----~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~----~~~v~~~ 110 (333)
T d1ri6a_ 39 VQPMVVSPDKRYLYVGVRPEF----RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN----AGNVSVT 110 (333)
T ss_dssp CCCEEECTTSSEEEEEETTTT----EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT----TTEEEEE
T ss_pred EeEEEEeCCCCEEEEEECCCC----eEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccC----CCceeee
Confidence 357899999999965554334 56666665443 2211 122223359999999 66554322 2335544
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEe----eecccc---eeeeEeec
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVL----TPRVVG---VDTAASHR 229 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l----~~~~~~---~~~~~s~d 229 (648)
+........... ..........+.++||+++++..... ...+++++.......... .....+ ....++++
T Consensus 111 ~~~~~~~~~~~~-~~~~~~~~~~v~~s~d~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~ 187 (333)
T d1ri6a_ 111 RLEDGLPVGVVD-VVEGLDGCHSANISPDNRTLWVPALK--QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 187 (333)
T ss_dssp EEETTEEEEEEE-EECCCTTBCCCEECTTSSEEEEEEGG--GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred ccccccceeccc-ccCCCccceEEEeeecceeeeccccc--cceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecc
Confidence 444331111111 11122233356789999998865443 345666666554311111 111111 12347888
Q ss_pred CCEEEEEeccCCCCCcEEEEEeCCCCCccee--E--ecCC--CCcccceE--EEeCCEEEEEEecCCeeEEEEEEcCCCC
Q 006375 230 GNHFFITRRSDELFNSELLACPVDNTSETTV--L--IPHR--ESVKLQDI--QLFIDHLAVYEREGGLQKITTYRLPAVG 301 (648)
Q Consensus 230 g~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~--~~~~--~~~~~~~~--~~~~~~l~~~~~~~~~~~l~v~~~~~~g 301 (648)
+..++..... .....++.++......... + .+.. ........ +.+++.+++.....+ .+.++.++..+
T Consensus 188 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~--~~~~~~~~~~~ 263 (333)
T d1ri6a_ 188 EQYAYCVNEL--NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS--LITVFSVSEDG 263 (333)
T ss_dssp SSEEEEEETT--TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT--EEEEEEECTTS
T ss_pred ceeEEeeccc--cCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCC--eEEEEEEcCCC
Confidence 8876655443 2223444433332111111 1 1111 11112223 334445555544443 45555555433
Q ss_pred CcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcEE
Q 006375 302 EPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGISV 358 (648)
Q Consensus 302 ~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 358 (648)
.... ............++.+++|+..++ +..+...--++|++|.++|+++
T Consensus 264 ~~~~------~~~~~~~~~~p~~~a~spDGk~l~-va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 264 SVLS------KEGFQPTETQPRGFNVDHSGKYLI-AAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp CCEE------EEEEEECSSSCCCEEECTTSSEEE-EECTTTCEEEEEEEETTTTEEE
T ss_pred CEEE------EEEEeCCCCCeeEEEEeCCCCEEE-EEECCCCeEEEEEEECCCCcEE
Confidence 3211 111000000122345678888654 3333333346888899999843
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.66 E-value=1.8e-08 Score=107.08 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=85.6
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCC-CCCc--hhH-HHH-HHCCCEEEEEccCCCC-CCC--hhhhhccccc
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFN--SSR-LSL-LDRGFIFAIAQIRGGG-ELG--RQWYENGKFL 460 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~--~~~-~~l-~~~G~~v~~~~~rG~g-~~g--~~~~~~~~~~ 460 (648)
+.+.++.|+.. ..++++|++|++|||...... ..+. ... ..+ +.++.+|+.+|||-+- |+- .+.... .
T Consensus 106 L~LnI~~P~~~-~~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~~~---~ 181 (544)
T d1thga_ 106 LYLNVFRPAGT-KPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITAE---G 181 (544)
T ss_dssp CEEEEEEETTC-CTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHHH---T
T ss_pred CEEEEEECCCC-CCCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEecccccccccccCCchhhcc---c
Confidence 55666677665 556789999999997433222 1222 222 223 4568999999999532 221 111110 1
Q ss_pred CCCCcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhh--------CCCceeEEEecCCc
Q 006375 461 KKKNTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--------RPDLFKAAVAAVPF 519 (648)
Q Consensus 461 ~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--------~p~~~~a~v~~~~~ 519 (648)
.+-..+.|.+.|++|++++ -.-||++|.|+|+|+||..+..++.. ...+|+.+|+++|.
T Consensus 182 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 182 NTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred cccHHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 1224689999999999876 34699999999999999988877752 12489999999975
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=6.1e-06 Score=81.09 Aligned_cols=235 Identities=11% Similarity=0.068 Sum_probs=131.0
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee----ccc---cCccceeEEecCC-eEEEEEeCCCCCCceE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG----KPL---VGVTASVEWAGNE-ALVYITMDEILRPDKA 153 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~----~~~---~~~~~~~~WspDg-~l~y~~~~~~~~~~~l 153 (648)
.+..++|||||++||-.. +| .|.|||+.++.... ... .+....++|+||| .|+ +... ...|
T Consensus 53 ~V~~v~fs~~g~~latg~--dg----~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~-s~~~----dg~i 121 (337)
T d1gxra_ 53 VVCAVTISNPTRHVYTGG--KG----CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLI-VGGE----ASTL 121 (337)
T ss_dssp CCCEEEECSSSSEEEEEC--BS----EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEE-EEES----SSEE
T ss_pred cEEEEEECCCCCEEEEEE--CC----EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEE-Eeec----cccc
Confidence 356789999999998543 23 58999998764331 111 1224569999999 554 4432 2347
Q ss_pred EEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccce-eeeEeecCC
Q 006375 154 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVGV-DTAASHRGN 231 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~~-~~~~s~dg~ 231 (648)
..+++.....+-...+... ........++||+..++..+. ...+.++++.+++ ...... ....+ ...+++++.
T Consensus 122 ~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~---d~~i~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~ 196 (337)
T d1gxra_ 122 SIWDLAAPTPRIKAELTSS-APACYALAISPDSKVCFSCCS---DGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGT 196 (337)
T ss_dssp EEEECCCC--EEEEEEECS-SSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS
T ss_pred ccccccccccccccccccc-ccccccccccccccccccccc---ccccccccccccc-cccccccccccccccccccccc
Confidence 7888876532222222222 223345679999998875433 3458888988876 333222 22222 245889998
Q ss_pred EEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcCCCCCcccccCC
Q 006375 232 HFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQG 309 (648)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~ 309 (648)
.++..+.. ..+...|+......+ ...... .+..+.+.+ +.++ ....++ .+.++++.. ...
T Consensus 197 ~~~~~~~d-----~~v~i~d~~~~~~~~-~~~~~~--~i~~l~~~~~~~~l~-~~~~d~--~i~i~d~~~--~~~----- 258 (337)
T d1gxra_ 197 KLWTGGLD-----NTVRSWDLREGRQLQ-QHDFTS--QIFSLGYCPTGEWLA-VGMESS--NVEVLHVNK--PDK----- 258 (337)
T ss_dssp EEEEEETT-----SEEEEEETTTTEEEE-EEECSS--CEEEEEECTTSSEEE-EEETTS--CEEEEETTS--SCE-----
T ss_pred cccccccc-----ccccccccccceeec-cccccc--ceEEEEEcccccccc-eecccc--ccccccccc--ccc-----
Confidence 77766543 467778886632222 333322 345555544 3444 333443 567778773 211
Q ss_pred CceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 310 GKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 310 ~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
.........+..+.++++++.+ ++.+. -..++.||..+++.
T Consensus 259 ---~~~~~~~~~i~~v~~s~~g~~l-~s~s~---Dg~i~iwd~~~~~~ 299 (337)
T d1gxra_ 259 ---YQLHLHESCVLSLKFAYCGKWF-VSTGK---DNLLNAWRTPYGAS 299 (337)
T ss_dssp ---EEECCCSSCEEEEEECTTSSEE-EEEET---TSEEEEEETTTCCE
T ss_pred ---ccccccccccceEEECCCCCEE-EEEeC---CCeEEEEECCCCCE
Confidence 1111111123334556677643 33332 26788999988874
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.65 E-value=4.6e-08 Score=94.16 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=72.2
Q ss_pred CCCcEEEEecCCCCCCCC---CCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcC
Q 006375 404 GSDPLLLYGYGSYEICND---PAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 480 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~---~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 480 (648)
.++| ||++||-.+.... ..|......|.++||.|+++|++|.+ ..+..+ +++.+.++.+.+.
T Consensus 6 ~~~P-vvlvHG~~g~~~~~~~~yw~~i~~~L~~~G~~v~~~~~~~~~---~~~~~a----------~~l~~~i~~~~~~- 70 (285)
T d1ex9a_ 6 TKYP-IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLD---TSEVRG----------EQLLQQVEEIVAL- 70 (285)
T ss_dssp CSSC-EEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCSSS---CHHHHH----------HHHHHHHHHHHHH-
T ss_pred CCCC-EEEECCCCCCccccchhhHHHHHHHHHhCCCEEEEeCCCCCC---CcHHHH----------HHHHHHHHHHHHH-
Confidence 4678 6888995544322 13566678889999999999999754 334322 4555555555443
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCC
Q 006375 481 YCTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVP 518 (648)
Q Consensus 481 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~ 518 (648)
...+++.++||||||.++..++.++|++++.+|..+.
T Consensus 71 -~g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~t 107 (285)
T d1ex9a_ 71 -SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGA 107 (285)
T ss_dssp -HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred -cCCCeEEEEEECccHHHHHHHHHHCCccceeEEEECC
Confidence 2336899999999999999999999999999887654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.62 E-value=2e-06 Score=82.78 Aligned_cols=237 Identities=15% Similarity=0.129 Sum_probs=126.4
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc---cCccceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL---VGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~---~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..++|||||++||-.. .+| .|++||+++++...... ......++|+|||.++....+ ..+..+++
T Consensus 14 ~V~~l~~s~dg~~l~s~s-~Dg----~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d-----~~v~~~~~ 83 (299)
T d1nr0a2 14 AITALSSSADGKTLFSAD-AEG----HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWD-----DHLKVVPA 83 (299)
T ss_dssp CEEEEEECTTSSEEEEEE-TTS----CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETT-----TEEEEECS
T ss_pred CcEEEEECCCCCEEEEEc-CCC----eEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccce-----eeEEEecc
Confidence 467889999999987543 344 69999999988664321 123456999999966554432 24666666
Q ss_pred CCCCCCc-EEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEe
Q 006375 159 EADQSND-ICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITR 237 (648)
Q Consensus 159 ~~~~~~~-~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~ 237 (648)
....... ....... ......+.+++||+.++.... ..+.+++... ...+..........++|+++.|+..+
T Consensus 84 ~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~~~~~~~----~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~ 155 (299)
T d1nr0a2 84 GGSGVDSSKAVANKL-SSQPLGLAVSADGDIAVAACY----KHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGG 155 (299)
T ss_dssp SSSSSCTTSCCEEEC-SSCEEEEEECTTSSCEEEEES----SEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEE
T ss_pred CCccccccccccccc-ccccccccccccccccccccc----cccccccccc---cccccccccccccccccccccccccc
Confidence 5432111 1111111 223346788999998765433 3466666432 22222222222345889998776655
Q ss_pred ccCCCCCcEEEEEeCCCCCccee-EecCCCCcccceEEEeCC--EEEEEEecCCeeEEEEEEcCCCCCcccccCCCceee
Q 006375 238 RSDELFNSELLACPVDNTSETTV-LIPHRESVKLQDIQLFID--HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVE 314 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~ 314 (648)
.. ..|...|+++...... ...+.. .+..+.+.++ .++ ....++ .+.++++... .....+ . .
T Consensus 156 ~d-----g~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~-~~~~d~--~i~~~~~~~~-~~~~~~---~--~ 219 (299)
T d1nr0a2 156 QD-----SKVHVYKLSGASVSEVKTIVHPA--EITSVAFSNNGAFLV-ATDQSR--KVIPYSVANN-FELAHT---N--S 219 (299)
T ss_dssp TT-----SEEEEEEEETTEEEEEEEEECSS--CEEEEEECTTSSEEE-EEETTS--CEEEEEGGGT-TEESCC---C--C
T ss_pred cc-----ccccccccccccccccccccccc--ccccccccccccccc-cccccc--cccccccccc-cccccc---c--c
Confidence 43 3677777755322222 233332 3555666554 443 333343 5778887632 111100 0 1
Q ss_pred cCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 315 FIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 315 ~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
+......+..+.+++++..+ ++. +.. ..++.+|+.+++
T Consensus 220 ~~~h~~~v~~l~~s~~~~~l-~sg-s~d--g~i~iwd~~~~~ 257 (299)
T d1nr0a2 220 WTFHTAKVACVSWSPDNVRL-ATG-SLD--NSVIVWNMNKPS 257 (299)
T ss_dssp CCCCSSCEEEEEECTTSSEE-EEE-ETT--SCEEEEETTCTT
T ss_pred ccccccccccccccccccce-EEE-cCC--CEEEEEECCCCC
Confidence 11111123334455666643 332 222 468888887765
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.62 E-value=1.6e-08 Score=107.73 Aligned_cols=127 Identities=14% Similarity=0.128 Sum_probs=84.1
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCC---CCCCCCCchhHHHHHHCCCEEEEEccCCCC-CCChhhhhcccccCCCC
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYE---ICNDPAFNSSRLSLLDRGFIFAIAQIRGGG-ELGRQWYENGKFLKKKN 464 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~---~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g-~~g~~~~~~~~~~~~~~ 464 (648)
+.+.++.|+. ...+++|++|++|||.. +.....+... ...+..+.+|+.+|||-+- |+-. ........+-.
T Consensus 97 L~LnI~~P~~--~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~-~~~~~~~vvvVt~nYRlg~~Gfl~--~~~~~~~~gN~ 171 (542)
T d2ha2a1 97 LYLNVWTPYP--RPASPTPVLIWIYGGGFYSGAASLDVYDGR-FLAQVEGAVLVSMNYRVGTFGFLA--LPGSREAPGNV 171 (542)
T ss_dssp CEEEEEEESS--CCSSCEEEEEEECCSTTTCCCTTSGGGCTH-HHHHHHCCEEEEECCCCHHHHHCC--CTTCSSCCSCH
T ss_pred CEEEEEecCC--CCCCCCcEEEEEEECccccccCcccccCch-hhhhhccceeEeeeeeccceeeec--ccccccCCCcC
Confidence 4555566654 34567899999999743 2222223322 2224569999999999532 2110 00000111223
Q ss_pred cHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 006375 465 TFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFV 520 (648)
Q Consensus 465 ~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~~~a~v~~~~~~ 520 (648)
.+.|.+.|++|++++ -.-||++|.|+|+|+||..+..++... ..+|+.+|+.++..
T Consensus 172 Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 172 GLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 689999999999876 346999999999999999988777642 24899999998754
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.61 E-value=3.1e-06 Score=86.42 Aligned_cols=174 Identities=11% Similarity=0.004 Sum_probs=82.9
Q ss_pred EEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc----ceeeeEeecCCEEEEEeccCCCCCcEEEEEeC
Q 006375 177 SLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV----GVDTAASHRGNHFFITRRSDELFNSELLACPV 252 (648)
Q Consensus 177 ~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~----~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 252 (648)
..++.++|+|+++++... ....+.++++.+++ ......... .....+..++...++.... ..+..+...+.
T Consensus 209 ~~~~~~~~~g~~~~~a~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~v~~~~~ 283 (426)
T d1hzua2 209 LADGGWDSSHRYFMTAAN--NSNKVAVIDSKDRR-LSALVDVGKTPHPGRGANFVHPKYGPVWSTSH--LGDGSISLIGT 283 (426)
T ss_dssp EEEEEECTTSCEEEEEET--TCSEEEEEETTTTE-EEEEEECSSCCCCSCCEEEEETTTEEEEEEEC--TTTCEEEEEEC
T ss_pred cEeeeECCCCcEEEeeee--cccceeeeeccccc-EEEEeccCCcccccceeeeecCCCCceEEecc--CCCceEEEeec
Confidence 346789999999886543 34667778888775 332222111 1112233333333332222 12334555444
Q ss_pred CCCC------ccee-EecCCCCcccceEEEeCCEEEEEEecC--C--eeEEEEEEcCCCCCcccc-cCCCceeecCCCee
Q 006375 253 DNTS------ETTV-LIPHRESVKLQDIQLFIDHLAVYEREG--G--LQKITTYRLPAVGEPLKS-LQGGKSVEFIDPVY 320 (648)
Q Consensus 253 ~~~~------~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~--~--~~~l~v~~~~~~g~~~~~-l~~~~~i~~~~~~~ 320 (648)
.... +... +..+.....-..+++++.++++....+ + ...+.++++.. +..... ++..+...+++..-
T Consensus 284 ~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t-~~~~~~~~~~~~~~~~~~~~~ 362 (426)
T d1hzua2 284 DPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEWADLGEGAK 362 (426)
T ss_dssp CTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHHHCCCSSCC
T ss_pred cccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCC-CCcCeEEeccchhcccCCCCc
Confidence 3211 1111 222333322233444455555432211 1 23588999874 222111 11000011222221
Q ss_pred eeeCCCCcccccEEEEEEe-eCCCCCEEEEEECCCCc
Q 006375 321 SIDPSESVFSSRILRFHYS-SLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 321 ~v~~~~~~~~~~~l~~~~s-s~~~P~~~~~~d~~~~~ 356 (648)
.+..+.+++|+..++++.. +-...+.+..+|.++++
T Consensus 363 rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k 399 (426)
T d1hzua2 363 RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 399 (426)
T ss_dssp CEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence 2333456789998877653 34567789999999988
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.58 E-value=2.1e-05 Score=75.09 Aligned_cols=229 Identities=10% Similarity=0.076 Sum_probs=127.8
Q ss_pred EEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecC
Q 006375 96 AYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKD 173 (648)
Q Consensus 96 a~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 173 (648)
||..+..+ .+|.|+|+++++.+.. ........++|+||| ++|.+.. ....|..+++.++ +....+...
T Consensus 4 ~yV~~~~~---~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~----~~~~i~v~d~~t~--~~~~~~~~~- 73 (301)
T d1l0qa2 4 AYIANSES---DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANA----HSNDVSIIDTATN--NVIATVPAG- 73 (301)
T ss_dssp EEEEETTT---TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEG----GGTEEEEEETTTT--EEEEEEECS-
T ss_pred EEEEECCC---CEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEEC----CCCEEEEEECCCC--ceeeeeecc-
Confidence 56655433 2699999999987643 223333459999999 6654432 2346899999876 222233222
Q ss_pred CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCC
Q 006375 174 DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVD 253 (648)
Q Consensus 174 ~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~ 253 (648)
.....+.+++|++++++... ....+++++..+++....+..........++|||+.+++....+ ..+...+..
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~----~~~~~~~~~ 146 (301)
T d1l0qa2 74 -SSPQGVAVSPDGKQVYVTNM--ASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGD----KTVSVINTV 146 (301)
T ss_dssp -SSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT----TEEEEEETT
T ss_pred -cccccccccccccccccccc--ccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccc----cceeeeecc
Confidence 22346789999999887543 34678888888876222232222223456899999887776642 356666766
Q ss_pred CCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccc
Q 006375 254 NTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSS 331 (648)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~ 331 (648)
+.. ....++.... +..+.+.. ..+++..... ..+.++... ..... ..+..+. ...+...+.++
T Consensus 147 ~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~-----~~~~~~~---~~~~~~~~~~g 211 (301)
T d1l0qa2 147 TKA-VINTVSVGRS--PKGIAVTPDGTKVYVANFDS--MSISVIDTV--TNSVI-----DTVKVEA---APSGIAVNPEG 211 (301)
T ss_dssp TTE-EEEEEECCSS--EEEEEECTTSSEEEEEETTT--TEEEEEETT--TTEEE-----EEEECSS---EEEEEEECTTS
T ss_pred ccc-eeeecccCCC--ceEEEeeccccceeeecccc--ccccccccc--ceeee-----ecccccC---Ccceeeccccc
Confidence 522 2223333322 33344443 4555444332 334444444 22110 1111111 11123345667
Q ss_pred cEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 332 RILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 332 ~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
+.+++. .+-.....++.+|+.+++.
T Consensus 212 ~~~~v~-~~~~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 212 TKAYVT-NVDKYFNTVSMIDTGTNKI 236 (301)
T ss_dssp SEEEEE-EECSSCCEEEEEETTTTEE
T ss_pred cccccc-cccceeeeeeeeecCCCeE
Confidence 765544 3444557899999999873
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=3.6e-08 Score=104.45 Aligned_cols=127 Identities=14% Similarity=0.061 Sum_probs=82.3
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCCCCCC-CCCchhHHHH-HHCCCEEEEEccCCCC-CCChhhhhcccccCCCCc
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYEICND-PAFNSSRLSL-LDRGFIFAIAQIRGGG-ELGRQWYENGKFLKKKNT 465 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~-~~~~~~~~~l-~~~G~~v~~~~~rG~g-~~g~~~~~~~~~~~~~~~ 465 (648)
+.+.++.|... .++.|++|++|||...... ..+......+ ++.+.+|+.+|||-+- |+-. ........+-..
T Consensus 90 L~lnI~~P~~~---~~~~PV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vVvVt~nYRlg~~Gfl~--~~~~~~~~gN~G 164 (526)
T d1p0ia_ 90 LYLNVWIPAPK---PKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLA--LPGNPEAPGNMG 164 (526)
T ss_dssp CEEEEEEESSC---CSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCC--CTTCTTSCSCHH
T ss_pred CEEEEEeCCCC---CCCCceEEEEECCCcccccCcccccCccccccccceeEEecccccccccccC--CCCccccccccc
Confidence 44555566543 4578999999997433222 1122222333 4569999999999532 2110 000011112237
Q ss_pred HhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhh--CCCceeEEEecCCcc
Q 006375 466 FTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPFV 520 (648)
Q Consensus 466 ~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~~~a~v~~~~~~ 520 (648)
+.|.+.|++|++++ -.-||++|.|+|.|+||..+..++.. ...+|+.+|+.++..
T Consensus 165 l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 165 LFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred ccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 89999999999876 34699999999999999988776653 223899999887653
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.55 E-value=2.5e-08 Score=105.88 Aligned_cols=126 Identities=16% Similarity=0.152 Sum_probs=83.6
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCCC---CCCCCCCchhHHHHHHCCCEEEEEccCCCC-CCChhhhhcccccCCCC
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSYE---ICNDPAFNSSRLSLLDRGFIFAIAQIRGGG-ELGRQWYENGKFLKKKN 464 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~~---~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g-~~g~~~~~~~~~~~~~~ 464 (648)
+.+.++.|+.. .+++|++|++|||.. ......+.. ....+.++.+|+.+|||-+- |+-. ........+-.
T Consensus 92 L~LnI~~P~~~---~~~lPV~v~ihGG~~~~g~~~~~~~~~-~~~~~~~~vvvVt~nYRlg~~GFl~--~~~~~~~~gN~ 165 (532)
T d1ea5a_ 92 LYLNIWVPSPR---PKSTTVMVWIYGGGFYSGSSTLDVYNG-KYLAYTEEVVLVSLSYRVGAFGFLA--LHGSQEAPGNV 165 (532)
T ss_dssp CEEEEEECSSC---CSSEEEEEEECCSTTTCCCTTCGGGCT-HHHHHHHTCEEEECCCCCHHHHHCC--CTTCSSSCSCH
T ss_pred CEEEEEeCCCC---CCCCcEEEEEEcCCcccccCCccccCc-chhhcccCccEEEEeeccccccccc--cccccCCCCcc
Confidence 44555566543 357899999999742 222222332 22345679999999999532 2210 00000111123
Q ss_pred cHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 006375 465 TFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFV 520 (648)
Q Consensus 465 ~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~~~a~v~~~~~~ 520 (648)
.+.|.+.|++|++++ -.-||++|.|+|+|+||..+..++... ..+|+.+|+.++..
T Consensus 166 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~ 226 (532)
T d1ea5a_ 166 GLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 226 (532)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred cchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecccc
Confidence 789999999999876 336999999999999999887777631 24899999988754
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.55 E-value=1.8e-05 Score=77.76 Aligned_cols=205 Identities=12% Similarity=0.056 Sum_probs=109.0
Q ss_pred eEEeCCCCCEEEEEEeC-----CCCeEEEEEEEECCCCCeeecc-c--------cCccceeEEecCC-eEEEEEeCCCCC
Q 006375 85 CFQVSPDNKLVAYAEDT-----KGDEIYTVYVIDIETGTPVGKP-L--------VGVTASVEWAGNE-ALVYITMDEILR 149 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~-----~G~e~~~l~v~dl~~g~~~~~~-~--------~~~~~~~~WspDg-~l~y~~~~~~~~ 149 (648)
.+.|||||++|+++... .|.....|+++|+++++.+... . ......++|+||| .+++... ..
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~ 127 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF---SP 127 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC---SS
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecC---CC
Confidence 57999999999887542 1233457999999999876321 1 1112358999999 6665443 22
Q ss_pred CceEEEEECCCCCCCcEEEEeecCCC------eEEEEEeCCCCcEEEEEEcc----------------------------
Q 006375 150 PDKAWLHKLEADQSNDICLYHEKDDI------YSLGLQASESKKFLFIASES---------------------------- 195 (648)
Q Consensus 150 ~~~l~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~s~Dg~~l~~~~~~---------------------------- 195 (648)
...++..+..++. ........... -...+.+++||+.+++....
T Consensus 128 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (355)
T d2bbkh_ 128 APAVGVVDLEGKA--FKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 205 (355)
T ss_dssp SCEEEEEETTTTE--EEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT
T ss_pred CceeeeeecCCCc--EeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCC
Confidence 3345566665542 11111110000 00123456666666553211
Q ss_pred -------ccccEEEEEECCCCCceeEeeecc-------------cc-eeeeEeecCCEEEEEeccCC-----CCCcEEEE
Q 006375 196 -------KITRFVFYLDVSKPEELRVLTPRV-------------VG-VDTAASHRGNHFFITRRSDE-----LFNSELLA 249 (648)
Q Consensus 196 -------~~~~~l~~~dl~~~~~~~~l~~~~-------------~~-~~~~~s~dg~~l~~~~~~~~-----~~~~~l~~ 249 (648)
.....+|++++.+++ ...+.... .+ ....+++++..+|....... .....|..
T Consensus 206 ~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v 284 (355)
T d2bbkh_ 206 AGRLVWPTYTGKIHQIDLSSGD-AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 284 (355)
T ss_dssp TTEEEEEBTTSEEEEEECTTSS-CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCeEEEecCCCeEEEEecCCCc-EEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence 113467888888775 32221110 01 12458889998887765421 12247888
Q ss_pred EeCCCCCcceeEecCCCCcccceEEEe--CCEEEEEEecCCeeEEEEEEcCC
Q 006375 250 CPVDNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
+|..+..... .++... .+..+.+. ++.+++... .+...|.+|++.+
T Consensus 285 ~d~~t~~~~~-~~~~~~--~~~~~a~spDG~~~l~v~~-~~d~~i~v~D~~t 332 (355)
T d2bbkh_ 285 LDAKTGERLA-KFEMGH--EIDSINVSQDEKPLLYALS-TGDKTLYIHDAES 332 (355)
T ss_dssp EETTTCCEEE-EEEEEE--EECEEEECCSSSCEEEEEE-TTTTEEEEEETTT
T ss_pred EeCCCCcEEE-EecCCC--CEEEEEEcCCCCeEEEEEE-CCCCEEEEEECCC
Confidence 8887633222 233221 23445554 444444433 2335789999874
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.53 E-value=5e-08 Score=104.49 Aligned_cols=129 Identities=18% Similarity=0.211 Sum_probs=83.4
Q ss_pred EeEEEEEeeCccccCCCCcEEEEecCCC---CCCCCCCCch----hHHHHHHC-CCEEEEEccCCCCCCChhhhhccccc
Q 006375 389 IPICIVYRKNLVKLDGSDPLLLYGYGSY---EICNDPAFNS----SRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFL 460 (648)
Q Consensus 389 i~~~l~~~~~~~~~~~~~P~vl~~hGg~---~~~~~~~~~~----~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~ 460 (648)
+.+.++.|+.....++++|++|++|||. |+.....+.. ....++.. +.+|+.+|||-+- +| |-..+...
T Consensus 81 L~LNI~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~-~G--Fl~~~~~~ 157 (579)
T d2bcea_ 81 LYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGP-LG--FLSTGDSN 157 (579)
T ss_dssp CEEEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHH-HH--HCCCSSTT
T ss_pred CEEEEEECCCCCCCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeecccccc-cc--cccccccC
Confidence 5566667765412346799999999973 2222222221 12455554 6999999999532 11 11111111
Q ss_pred CCC-CcHhHHHHHHHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhh--CCCceeEEEecCCcc
Q 006375 461 KKK-NTFTDFIACAEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNM--RPDLFKAAVAAVPFV 520 (648)
Q Consensus 461 ~~~-~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~~~a~v~~~~~~ 520 (648)
... ..+.|.+.|++|++++ -.-||++|.|+|+|+||..+..++.. ...+|+.+|+++|..
T Consensus 158 ~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 223 (579)
T d2bcea_ 158 LPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred CCccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCc
Confidence 112 3689999999999876 33699999999999999988876653 235899999998743
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.50 E-value=4.7e-06 Score=81.13 Aligned_cols=115 Identities=14% Similarity=0.102 Sum_probs=72.1
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-ccc------CccceeEEecCC-eEEEEEeCCC-------
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV------GVTASVEWAGNE-ALVYITMDEI------- 147 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~------~~~~~~~WspDg-~l~y~~~~~~------- 147 (648)
...+.+||||++|+.+...+| .|+++|+++++.+.. ... .....++|+||+ .++.......
T Consensus 36 ~~~i~~spDg~~l~v~~~~~~----~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 36 PMVPMVAPGGRIAYATVNKSE----SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTT----EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ccEEEECCCCCEEEEEECCCC----eEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence 357899999999876644444 799999999987632 111 113469999999 7665543211
Q ss_pred CCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 148 LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 148 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
.....+...+..++ +....+... .....+.++|||++++... .+++++|..+++
T Consensus 112 ~~~~~~~~~d~~~~--~~~~~~~~~--~~~~~~~~s~dg~~l~~~~-----~~~~~~d~~~~~ 165 (337)
T d1pbyb_ 112 VQPTRVALYDAETL--SRRKAFEAP--RQITMLAWARDGSKLYGLG-----RDLHVMDPEAGT 165 (337)
T ss_dssp ECCCEEEEEETTTT--EEEEEEECC--SSCCCEEECTTSSCEEEES-----SSEEEEETTTTE
T ss_pred ccccceeeccccCC--eEEEecccc--CCceEEEEcCCCCEEEEEc-----CCcceeeeecCc
Confidence 12345667777765 222233222 2233567899999998743 235667877765
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.49 E-value=1.2e-07 Score=101.32 Aligned_cols=118 Identities=19% Similarity=0.116 Sum_probs=79.1
Q ss_pred cCCCCcEEEEecCCC---CCCCCCCCchhHHHHHHC-CCEEEEEccCCCC-CCC---hhhhhcccc-cCCCCcHhHHHHH
Q 006375 402 LDGSDPLLLYGYGSY---EICNDPAFNSSRLSLLDR-GFIFAIAQIRGGG-ELG---RQWYENGKF-LKKKNTFTDFIAC 472 (648)
Q Consensus 402 ~~~~~P~vl~~hGg~---~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g-~~g---~~~~~~~~~-~~~~~~~~D~~~~ 472 (648)
.++++|++|++|||. |+...+.+.. ..|+.. +.+|+.+|||-+- |+- ......... ..+=..+.|.+.|
T Consensus 135 ~~~~lPV~V~ihGG~f~~Gs~~~~~~~~--~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN~Gl~Dq~~A 212 (571)
T d1dx4a_ 135 TTNGLPILIWIYGGGFMTGSATLDIYNA--DIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALA 212 (571)
T ss_dssp CCSSEEEEEEECCSTTTCCCTTCGGGCC--HHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCccCCCCcccccch--hhhhhcCCeeEEeecceeccccccccccccccccccCCCCcccchHHHHH
Confidence 357899999999974 2333333333 445544 6999999999543 221 000000011 1112378999999
Q ss_pred HHHHHHc---CCCCCCeEEEEeeChhHHHHHHHHhhC--CCceeEEEecCCccc
Q 006375 473 AEYLIKN---CYCTKEKLCIEGRSAGGLLIGAVLNMR--PDLFKAAVAAVPFVD 521 (648)
Q Consensus 473 ~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~~~a~v~~~~~~d 521 (648)
++|++++ -.-||++|.|+|+|+||..+..++... ..+|+.+|+.++...
T Consensus 213 L~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 213 IRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 9999987 235999999999999999988777642 248999999887543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.48 E-value=6.1e-05 Score=72.90 Aligned_cols=147 Identities=9% Similarity=0.076 Sum_probs=77.9
Q ss_pred CEEEEEEeCCCCeEEEEEEEECCCCCee--ec--cccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEE
Q 006375 93 KLVAYAEDTKGDEIYTVYVIDIETGTPV--GK--PLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDIC 167 (648)
Q Consensus 93 ~~la~~~~~~G~e~~~l~v~dl~~g~~~--~~--~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~ 167 (648)
|++.|.....+ .+|+||++++...+ .. ..++....++||||| .|| +... ....|..+++.......+.
T Consensus 3 ~~~v~v~~~~~---~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~-v~~~---~d~~i~~~~i~~~~~~~~~ 75 (333)
T d1ri6a_ 3 KQTVYIASPES---QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLY-VGVR---PEFRVLAYRIAPDDGALTF 75 (333)
T ss_dssp EEEEEEEEGGG---TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEE-EEET---TTTEEEEEEECTTTCCEEE
T ss_pred ceEEEEECCCC---CcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEE-EEEC---CCCeEEEEEEeCCCCcEEE
Confidence 45667765433 37888887654322 11 223334569999999 664 4432 1234666666654322233
Q ss_pred EEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEee---ecccc-eeeeEeecCCEEEEEeccCCCC
Q 006375 168 LYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLT---PRVVG-VDTAASHRGNHFFITRRSDELF 243 (648)
Q Consensus 168 ~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~---~~~~~-~~~~~s~dg~~l~~~~~~~~~~ 243 (648)
+...........+.+||||++|++.... ...+..++.+... ..... ..... ....++||++.++......
T Consensus 76 ~~~~~~~~~p~~l~~spDg~~l~v~~~~--~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~--- 149 (333)
T d1ri6a_ 76 AAESALPGSLTHISTDHQGQFVFVGSYN--AGNVSVTRLEDGL-PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ--- 149 (333)
T ss_dssp EEEEECSSCCSEEEECTTSSEEEEEETT--TTEEEEEEEETTE-EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG---
T ss_pred eeecccCCCceEEEEcCCCCEEeecccC--CCceeeecccccc-ceecccccCCCccceEEEeeecceeeecccccc---
Confidence 3222222222357899999999875433 3445555544443 22111 11111 2345899999877666542
Q ss_pred CcEEEEEeCC
Q 006375 244 NSELLACPVD 253 (648)
Q Consensus 244 ~~~l~~~~~~ 253 (648)
..+..++..
T Consensus 150 -~~i~~~~~~ 158 (333)
T d1ri6a_ 150 -DRICLFTVS 158 (333)
T ss_dssp -TEEEEEEEC
T ss_pred -ceeeEEEec
Confidence 245555544
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.47 E-value=1.7e-05 Score=79.09 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=83.0
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-ccc---CccceeEEecCC-eEEEEEeCCCCCCceEEEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV---GVTASVEWAGNE-ALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~---~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~ 157 (648)
+...+|||||++||+... +| .|.|||+++++.... .+. +....++|+||+ .|+ +...+ ..|+.++
T Consensus 10 It~~~~s~dg~~la~~~~-~~----~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~-s~s~D----~~i~vWd 79 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPN-NH----EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV-TCGTD----RNAYVWT 79 (371)
T ss_dssp CCEEEECTTSSEEEEECS-SS----EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEE-EEETT----SCEEEEE
T ss_pred eEEEEECCCCCEEEEEeC-CC----EEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEE-EEECC----CeEEEEe
Confidence 457899999999998643 23 689999988864422 222 234569999999 554 44321 2366677
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee---cccce-eeeEeecCCEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP---RVVGV-DTAASHRGNHF 233 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~---~~~~~-~~~~s~dg~~l 233 (648)
+.++..+....+... ......+.|+||+++|+..+.+ ..-.+|.++..... ...... ....+ ...|+|+|+.|
T Consensus 80 ~~~~~~~~~~~~~~~-~~~v~~i~~~p~~~~l~~~s~d-~~i~i~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l 156 (371)
T d1k8kc_ 80 LKGRTWKPTLVILRI-NRAARCVRWAPNEKKFAVGSGS-RVISICYFEQENDW-WVCKHIKKPIRSTVLSLDWHPNSVLL 156 (371)
T ss_dssp EETTEEEEEEECCCC-SSCEEEEEECTTSSEEEEEETT-SSEEEEEEETTTTE-EEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred ecccccccccccccc-cccccccccccccccceeeccc-Ccceeeeeeccccc-ccccccccccccccccccccccccce
Confidence 765522222222222 2234467899999998875533 33456655544432 111111 11122 24589999877
Q ss_pred EEEec
Q 006375 234 FITRR 238 (648)
Q Consensus 234 ~~~~~ 238 (648)
+..+.
T Consensus 157 ~s~s~ 161 (371)
T d1k8kc_ 157 AAGSC 161 (371)
T ss_dssp EEEET
T ss_pred ecccc
Confidence 55544
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=98.45 E-value=5.5e-08 Score=93.90 Aligned_cols=173 Identities=11% Similarity=0.030 Sum_probs=92.8
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHH-HHHHHHcCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC-AEYLIKNCYC 482 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~ 482 (648)
+..|.|+++||.........|...+..|. .++.|+.++.+|.|...... ......+++++.+. ++.+....
T Consensus 58 ~~~~~l~c~~~~~~~g~~~~y~~la~~L~-~~~~V~al~~pG~~~~~~~~-----~~~~~~s~~~~a~~~~~~i~~~~-- 129 (283)
T d2h7xa1 58 EGRAVLVGCTGTAANGGPHEFLRLSTSFQ-EERDFLAVPLPGYGTGTGTG-----TALLPADLDTALDAQARAILRAA-- 129 (283)
T ss_dssp CCCCEEEEECCCCTTCSTTTTHHHHHTTT-TTCCEEEECCTTCCBC---C-----BCCEESSHHHHHHHHHHHHHHHH--
T ss_pred CCCceEEEeCCCCCCCCHHHHHHHHHhcC-CCceEEEEeCCCCCCCCCCc-----cccccCCHHHHHHHHHHHHHHhc--
Confidence 45689999998443333344555555544 47999999999876432110 01111345666554 34444431
Q ss_pred CCCeEEEEeeChhHHHHHHHHhhC----CCceeEEEecCCcccccccccCCCCCCCcccc--cccCCCCCHH------HH
Q 006375 483 TKEKLCIEGRSAGGLLIGAVLNMR----PDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEW--EEWGDPWKEE------FY 550 (648)
Q Consensus 483 d~~~i~i~G~S~GG~l~~~~~~~~----p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~--~~~g~~~~~~------~~ 550 (648)
...++.++||||||.++..++.+. ++.++++|+..+..-................. .+.....+.. ..
T Consensus 130 ~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~ 209 (283)
T d2h7xa1 130 GDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYA 209 (283)
T ss_dssp TTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTCCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred CCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCCccccccchhhhhhhhHHHhhcccccccccHHHHHHHHHH
Confidence 236799999999999998888764 34577777765432111000000000000000 0111111111 11
Q ss_pred HHHHcCCccccCCCCCCCeEEEeecCCCCccCCchHHHH
Q 006375 551 FYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMYSEPAKF 589 (648)
Q Consensus 551 ~~~~~~sp~~~~~~~~~P~~li~~g~~D~~v~~~~~~~~ 589 (648)
+.+..+ ....+++| +|+++|++|..++......+
T Consensus 210 ~~~~~~----~~~~~~~P-vl~i~g~~d~~~~~~~~~~w 243 (283)
T d2h7xa1 210 RFLAGP----RPGRSSAP-VLLVRASEPLGDWQEERGDW 243 (283)
T ss_dssp HHHHSC----CCCCCCSC-EEEEEESSCSSCCCGGGCCC
T ss_pred HHHhhc----cccccCCC-eEEEEeCCCCCCCHHHHHHH
Confidence 112222 23456888 99999999999988765544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.45 E-value=6.1e-05 Score=73.22 Aligned_cols=249 Identities=9% Similarity=0.044 Sum_probs=137.3
Q ss_pred EEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCCeEEEEEeCCCCCCceEEEEEC
Q 006375 81 YSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 81 ~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l 158 (648)
+.+.++.|.+||+ | |.++..+ .+|+.+++++++..... .......+++++||.++++..........++..+.
T Consensus 40 ~~lEG~~~D~~G~-L-y~~D~~~---g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~ 114 (319)
T d2dg1a1 40 LQLEGLNFDRQGQ-L-FLLDVFE---GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 114 (319)
T ss_dssp CCEEEEEECTTSC-E-EEEETTT---CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred cCcEeCEECCCCC-E-EEEECCC---CEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcC
Confidence 4557899999998 4 4455444 27888999888655322 22233469999999776655422223345666666
Q ss_pred CCCCCCcEEEEeecC-CCeEEEEEeCCCCcEEEEEEccc----cccEEEEEECCCCCceeEeeecccc-eeeeEeecCCE
Q 006375 159 EADQSNDICLYHEKD-DIYSLGLQASESKKFLFIASESK----ITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNH 232 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~-~~~~~~~~~s~Dg~~l~~~~~~~----~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~ 232 (648)
.+. ....+..... .....++.+++||+ |+++.... ....+|+++.+++. .+.+...... .-..|++||+.
T Consensus 115 ~~~--~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 115 NGD--NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKV 190 (319)
T ss_dssp TSC--SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSE
T ss_pred CCc--eeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccce
Confidence 554 2233332222 12234678899997 55543221 23579999988775 5555443222 12459999999
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCccee------EecCCCCcccceEEEeCCE-EEEEEecCCeeEEEEEEcCCCCCccc
Q 006375 233 FFITRRSDELFNSELLACPVDNTSETTV------LIPHRESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLPAVGEPLK 305 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~~~g~~~~ 305 (648)
||+.... ..+|++++++..+.... ...........++.++.+. +++....+ .+|.+++.+ |+.+
T Consensus 191 lyvad~~----~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~--g~V~~~~p~--G~~l- 261 (319)
T d2dg1a1 191 LWVTETT----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ--GRVLVFNKR--GYPI- 261 (319)
T ss_dssp EEEEEGG----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT--TEEEEECTT--SCEE-
T ss_pred EEEeccc----CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCC--CEEEEECCC--CcEE-
Confidence 8887553 35898888764322111 1111222235667777764 45444333 467777654 5533
Q ss_pred ccCCCceeecCCCee----eeeCCCCcccccEEEEEEeeCCCC--CEEEEEEC
Q 006375 306 SLQGGKSVEFIDPVY----SIDPSESVFSSRILRFHYSSLRTP--PSVYDYDM 352 (648)
Q Consensus 306 ~l~~~~~i~~~~~~~----~v~~~~~~~~~~~l~~~~ss~~~P--~~~~~~d~ 352 (648)
..|.+|.... .+.......+.+.++++.++...+ +.+|+.+.
T Consensus 262 -----~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 262 -----GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp -----EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred -----EEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence 3455553210 011112223455565555444333 34666654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.44 E-value=3.1e-05 Score=75.02 Aligned_cols=195 Identities=12% Similarity=0.049 Sum_probs=115.0
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++|+...+.. ...+.|+++++++...... .+....++|+||+ .++.+...+ ..|..+++
T Consensus 104 ~v~~v~~s~d~~~l~~~~~~~---~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d----~~i~i~d~ 176 (311)
T d1nr0a1 104 PVKDISWDSESKRIAAVGEGR---ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD----NTVAIFEG 176 (311)
T ss_dssp CEEEEEECTTSCEEEEEECCS---SCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT----SCEEEEET
T ss_pred ccccccccccccccccccccc---cccccccccccccccccccccccccccccccccceeeecccccc----cccccccc
Confidence 466789999999998776422 2347788888887653211 2234558999999 655554432 34788888
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-------ccce-eeeEeecC
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-------VVGV-DTAASHRG 230 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-------~~~~-~~~~s~dg 230 (648)
.+. +....+... ......+.++||+++|+..+. +..+.++|+.++.....+... ...+ ...|+|+|
T Consensus 177 ~~~--~~~~~~~~~-~~~i~~v~~~p~~~~l~~~~~---d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~ 250 (311)
T d1nr0a1 177 PPF--KFKSTFGEH-TKFVHSVRYNPDGSLFASTGG---DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 250 (311)
T ss_dssp TTB--EEEEEECCC-SSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred ccc--ccccccccc-cccccccccCccccccccccc---cccccccccccccccccccccccccccccccccccccCCCC
Confidence 765 223333322 233457889999998876543 345888888876511222111 1112 24589999
Q ss_pred CEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCC--CcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 231 NHFFITRRSDELFNSELLACPVDNTSETTVLIPHRE--SVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 231 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
+.|+..+.+ ..|...|+++....+ .++... ......+.+.++.++... .+| .+.+++++
T Consensus 251 ~~l~tgs~D-----g~v~iwd~~t~~~~~-~l~~~~~~~~~~~~~~~~~~~l~s~s-~dG--~i~~wd~d 311 (311)
T d1nr0a1 251 TKIASASAD-----KTIKIWNVATLKVEK-TIPVGTRIEDQQLGIIWTKQALVSIS-ANG--FINFVNPE 311 (311)
T ss_dssp SEEEEEETT-----SEEEEEETTTTEEEE-EEECCSSGGGCEEEEEECSSCEEEEE-TTC--CEEEEETT
T ss_pred CEEEEEeCC-----CeEEEEECCCCcEEE-EEECCCCccceEEEEEecCCEEEEEE-CCC--EEEEEeCC
Confidence 877654332 367888887643333 233222 223446777778766444 344 46666653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.43 E-value=1.6e-05 Score=77.53 Aligned_cols=116 Identities=7% Similarity=0.006 Sum_probs=74.0
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccC--ccceeEEecCCeEEEEEeCCCCCCceEEEEECCCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVG--VTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 161 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~--~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~ 161 (648)
++++|++|++|+..... + +|.|+|+++++.+.. .++. ....++|+|||+.+|+.. .....|+.+++.++
T Consensus 1 g~a~~~~~~~l~~~~~~-~----~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~---~~~~~v~~~d~~t~ 72 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNYP-N----NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---NHYGDIYGIDLDTC 72 (346)
T ss_dssp CCCCCTTCEEEEEEETT-T----EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE---TTTTEEEEEETTTT
T ss_pred CccCCCCCcEEEEEcCC-C----EEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEE---CCCCcEEEEeCccC
Confidence 36899999999876542 3 799999999987642 3332 234699999994444443 22356899999876
Q ss_pred CCCcEEEEeecC-CC----eEEEEEeCCCCcEEEEEEccc---------cccEEEEEECCCCC
Q 006375 162 QSNDICLYHEKD-DI----YSLGLQASESKKFLFIASESK---------ITRFVFYLDVSKPE 210 (648)
Q Consensus 162 ~~~~~~~~~~~~-~~----~~~~~~~s~Dg~~l~~~~~~~---------~~~~l~~~dl~~~~ 210 (648)
. ....+.... .. ...++.+||||+++++..... ....+.+++..+++
T Consensus 73 ~--~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 133 (346)
T d1jmxb_ 73 K--NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 133 (346)
T ss_dssp E--EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred e--eeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccce
Confidence 2 222222111 11 112568999999998765332 23567777777655
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.41 E-value=5.2e-05 Score=73.09 Aligned_cols=195 Identities=13% Similarity=0.200 Sum_probs=111.0
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
+.+++++|||+. |..+..+ .+|+.++.++.........+....++|+|||.++++.... ..++.+++.+..
T Consensus 30 ~e~iAv~pdG~l--~vt~~~~---~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~----~~~~~~~~~~~~ 100 (302)
T d2p4oa1 30 LENLASAPDGTI--FVTNHEV---GEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNA----DSIPVVSLVKSD 100 (302)
T ss_dssp EEEEEECTTSCE--EEEETTT---TEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECT----TSCEEEEEECTT
T ss_pred cCCEEECCCCCE--EEEeCCC---CEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCC----ceEEEEEecccc
Confidence 568899999984 3444433 3789999776544333444445569999999877766532 224444443332
Q ss_pred CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc--------cce--eeeEeecCCE
Q 006375 163 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV--------VGV--DTAASHRGNH 232 (648)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~--------~~~--~~~~s~dg~~ 232 (648)
.....+.......+..++.+.+||+.++. ......+|.++..++. ........ ... -..++.+++.
T Consensus 101 ~~~~~~~~~~~~~~~n~i~~~~~g~~~v~---~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~ 176 (302)
T d2p4oa1 101 GTVETLLTLPDAIFLNGITPLSDTQYLTA---DSYRGAIWLIDVVQPS-GSIWLEHPMLARSNSESVFPAANGLKRFGNF 176 (302)
T ss_dssp SCEEEEEECTTCSCEEEEEESSSSEEEEE---ETTTTEEEEEETTTTE-EEEEEECGGGSCSSTTCCSCSEEEEEEETTE
T ss_pred cceeeccccCCccccceeEEccCCCEEee---ccccccceeeeccCCc-ceeEecCCccceeeccCcccccccccccCCc
Confidence 23344444444455567788999975432 2245689999988775 22221110 000 1235677888
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCccee--EecCCCCcccceEEEeCCEE-EEEEecCCeeEEEEEEcC
Q 006375 233 FFITRRSDELFNSELLACPVDNTSETTV--LIPHRESVKLQDIQLFIDHL-AVYEREGGLQKITTYRLP 298 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~l~v~~~~ 298 (648)
+|+.... +.+|++++.+....... ..... ....++.++.+.. ++....+ .++.+++.+
T Consensus 177 l~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~--~~pdgia~d~dG~l~va~~~~--~~V~~i~p~ 237 (302)
T d2p4oa1 177 LYVSNTE----KMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIY--NSVVRIAPD 237 (302)
T ss_dssp EEEEETT----TTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTT--CCEEEECTT
T ss_pred eeeecCC----CCeEEeccccccccccccccccCC--CCCcceEECCCCCEEEEEcCC--CcEEEECCC
Confidence 8877553 35899988765332211 22222 2356788877654 4333333 356666555
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.38 E-value=8.5e-06 Score=83.30 Aligned_cols=207 Identities=10% Similarity=0.007 Sum_probs=116.2
Q ss_pred ceEEEecccccCCCCcEEEeeEEeCCCCC-EEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCCeEEEE
Q 006375 65 EHLILDENVKAEGRGFYSVGCFQVSPDNK-LVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYI 142 (648)
Q Consensus 65 ~~~lld~n~~~~~~~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg~l~y~ 142 (648)
.+|++.+..+... +....|.+ .++.+.+..| +|.|+|+++++.+.. ........++|||||+.+|+
T Consensus 11 w~v~~~~~~~~~~--------~~~~~~~~~~~~v~~~d~g----~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~ 78 (432)
T d1qksa2 11 WKVHVAPEDRPTQ--------QMNDWDLENLFSVTLRDAG----QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFV 78 (432)
T ss_dssp CEESSCGGGSCSS--------CCSCCCGGGEEEEEETTTT----EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred eeEecccccCCCc--------eeecCCCCcEEEEEEcCCC----EEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEE
Confidence 3566655554431 22344544 4455555555 799999999998753 22223456999999944455
Q ss_pred EeCCCCCCceEEEEECCCCCCCcEEEEeecC--CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecc-
Q 006375 143 TMDEILRPDKAWLHKLEADQSNDICLYHEKD--DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRV- 219 (648)
Q Consensus 143 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~- 219 (648)
... ...+..+++.++......-..... ......+.+||||++|+++.. ....+.++|.++++ ........
T Consensus 79 ~s~----dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~--~~~~v~i~d~~t~~-~~~~~~~~~ 151 (432)
T d1qksa2 79 IGR----DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY--WPPQYVIMDGETLE-PKKIQSTRG 151 (432)
T ss_dssp EET----TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE--ETTEEEEEETTTCC-EEEEEECCE
T ss_pred EcC----CCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC--CCCeEEEEeCcccc-ceeeeccCC
Confidence 432 235888998876322211111111 123345678899999987543 34678899999887 33322210
Q ss_pred ---c-------c--eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcce-eEecCCCCcccceEEEeCC--EEEEEE
Q 006375 220 ---V-------G--VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETT-VLIPHRESVKLQDIQLFID--HLAVYE 284 (648)
Q Consensus 220 ---~-------~--~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~l~~~~ 284 (648)
. . ....+||+|..+++.... ..++..++..+..... +.++.... +.++.++++ ++++..
T Consensus 152 ~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~----~~~i~~~d~~~~~~~~~~~i~~g~~--~~~~~~spdg~~~~va~ 225 (432)
T d1qksa2 152 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKE----TGKILLVDYTDLNNLKTTEISAERF--LHDGGLDGSHRYFITAA 225 (432)
T ss_dssp ECTTTCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEETTCSSEEEEEEEECCSS--EEEEEECTTSCEEEEEE
T ss_pred ccccceeccCCCceeEEEECCCCCEEEEEEcc----CCeEEEEEccCCCcceEEEEcccCc--cccceECCCCCEEEEec
Confidence 0 0 112468888876665443 2468888876533222 23444332 455555554 444444
Q ss_pred ecCCeeEEEEEEcC
Q 006375 285 REGGLQKITTYRLP 298 (648)
Q Consensus 285 ~~~~~~~l~v~~~~ 298 (648)
. ....+.+++..
T Consensus 226 ~--~~~~v~v~d~~ 237 (432)
T d1qksa2 226 N--ARNKLVVIDTK 237 (432)
T ss_dssp G--GGTEEEEEETT
T ss_pred c--ccceEEEeecc
Confidence 3 33467777766
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=0.00011 Score=71.54 Aligned_cols=192 Identities=11% Similarity=0.094 Sum_probs=111.8
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee-ccc---cCccceeEEecCCeEEEEEeCCCCCCceEEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG-KPL---VGVTASVEWAGNEALVYITMDEILRPDKAWLHK 157 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~-~~~---~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~ 157 (648)
.+..+.|||||++|+.... +| .|.+||+....... ..+ ........|+||+.++++... ...+..++
T Consensus 99 ~I~~v~~s~dg~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----d~~i~~~~ 169 (337)
T d1gxra_ 99 YIRSCKLLPDGCTLIVGGE-AS----TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS----DGNIAVWD 169 (337)
T ss_dssp BEEEEEECTTSSEEEEEES-SS----EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cEEEEEEcCCCCEEEEeec-cc----cccccccccccccccccccccccccccccccccccccccccc----cccccccc
Confidence 4678999999999976543 34 78999987654331 111 112345889999944444432 23478888
Q ss_pred CCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEE
Q 006375 158 LEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFIT 236 (648)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~ 236 (648)
+.++ +........ ......+.++++++.+++.+. ...+.++|+.+++ ..........+ ...++|+++.|+..
T Consensus 170 ~~~~--~~~~~~~~~-~~~v~~l~~s~~~~~~~~~~~---d~~v~i~d~~~~~-~~~~~~~~~~i~~l~~~~~~~~l~~~ 242 (337)
T d1gxra_ 170 LHNQ--TLVRQFQGH-TDGASCIDISNDGTKLWTGGL---DNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp TTTT--EEEEEECCC-SSCEEEEEECTTSSEEEEEET---TSEEEEEETTTTE-EEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred cccc--ccccccccc-ccccccccccccccccccccc---cccccccccccce-eecccccccceEEEEEccccccccee
Confidence 8765 222222222 233446789999999887543 3568899998875 22222222222 24588999887655
Q ss_pred eccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCC
Q 006375 237 RRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~ 299 (648)
+.. ..+...++....... ...+. ..+..+.+..+ ..++....++ .+.+|++..
T Consensus 243 ~~d-----~~i~i~d~~~~~~~~-~~~~~--~~i~~v~~s~~g~~l~s~s~Dg--~i~iwd~~~ 296 (337)
T d1gxra_ 243 MES-----SNVEVLHVNKPDKYQ-LHLHE--SCVLSLKFAYCGKWFVSTGKDN--LLNAWRTPY 296 (337)
T ss_dssp ETT-----SCEEEEETTSSCEEE-ECCCS--SCEEEEEECTTSSEEEEEETTS--EEEEEETTT
T ss_pred ccc-----ccccccccccccccc-ccccc--cccceEEECCCCCEEEEEeCCC--eEEEEECCC
Confidence 443 357777876633222 22222 23556666554 2333444444 577888774
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.35 E-value=1.4e-05 Score=81.36 Aligned_cols=127 Identities=6% Similarity=-0.090 Sum_probs=81.9
Q ss_pred ceEEEecccccCCCCcEEEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCccceeEEecCCeEEEEE
Q 006375 65 EHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGVTASVEWAGNEALVYIT 143 (648)
Q Consensus 65 ~~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg~l~y~~ 143 (648)
.+++++++.+.. .+.+++|.+.+.+.....+ .+|.|+|+++++.+.. ........+++||||+.+|+.
T Consensus 11 ~~~~~~~~~~p~--------~~~~~~d~~~~~~V~~~~d---g~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~ 79 (426)
T d1hzua2 11 WKVLVKPEDRPK--------KQLNDLDLPNLFSVTLRDA---GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVI 79 (426)
T ss_dssp CEESSCGGGSCS--------SCCSCCCGGGEEEEEETTT---TEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred heeeCCcccCCC--------cccccCCCCeEEEEEEcCC---CEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEE
Confidence 467777777654 3467888776665544322 3899999999997743 222234569999999444655
Q ss_pred eCCCCCCceEEEEECCCCCCCcEEEEeecC----CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 144 MDEILRPDKAWLHKLEADQSNDICLYHEKD----DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 144 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
.. ...|.++++.++.. ..+.+-.. ..+..++.+||||+++++.+. ....+.++|..++.
T Consensus 80 ~~----d~~v~vwd~~t~~~--~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~--~~~~v~i~d~~~~~ 142 (426)
T d1hzua2 80 GR----DARIDMIDLWAKEP--TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY--WPPQFAIMDGETLE 142 (426)
T ss_dssp ET----TSEEEEEETTSSSC--EEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE--ESSEEEEEETTTCC
T ss_pred eC----CCCEEEEEccCCce--eEEEEEeCCCCCcceEEeeeecCCCCEEEEeec--CCCeEEEEcCCccc
Confidence 42 23588899988732 22222111 123446778999999886543 34567888988876
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.31 E-value=7.7e-07 Score=72.77 Aligned_cols=84 Identities=13% Similarity=0.084 Sum_probs=59.4
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCCCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCYCT 483 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 483 (648)
++-|.||++||... . |. ..+.++|.|+++|.||.|.... ...+.+++.+.+..+++.- +
T Consensus 19 G~G~pvlllHG~~~-~----w~----~~L~~~yrvi~~DlpG~G~S~~----------p~~s~~~~a~~i~~ll~~L--~ 77 (122)
T d2dsta1 19 GKGPPVLLVAEEAS-R----WP----EALPEGYAFYLLDLPGYGRTEG----------PRMAPEELAHFVAGFAVMM--N 77 (122)
T ss_dssp CCSSEEEEESSSGG-G----CC----SCCCTTSEEEEECCTTSTTCCC----------CCCCHHHHHHHHHHHHHHT--T
T ss_pred cCCCcEEEEecccc-c----cc----ccccCCeEEEEEeccccCCCCC----------cccccchhHHHHHHHHHHh--C
Confidence 34578899998432 1 11 2245799999999999876521 1345677777777666652 3
Q ss_pred CCeEEEEeeChhHHHHHHHHhhCCC
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMRPD 508 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~p~ 508 (648)
-++..++|+|+||.++..+++..+.
T Consensus 78 i~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 78 LGAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp CCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred CCCcEEEEeCccHHHHHHHHhhccc
Confidence 3788999999999999998887554
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.26 E-value=0.00044 Score=68.00 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=41.2
Q ss_pred eEEeCCCCCEEEEEEeCCC-----CeEEEEEEEECCCCCeeec-cccC--------ccceeEEecCC-eEEEEEe
Q 006375 85 CFQVSPDNKLVAYAEDTKG-----DEIYTVYVIDIETGTPVGK-PLVG--------VTASVEWAGNE-ALVYITM 144 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G-----~e~~~l~v~dl~~g~~~~~-~~~~--------~~~~~~WspDg-~l~y~~~ 144 (648)
.+.|||||++|++.....+ .....|+|+|+++++.+.. ..+. ....+.|++|+ .+++...
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~ 144 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF 144 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEE
Confidence 5799999999999865432 3345799999999987632 1111 12458899999 6655443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.24 E-value=4.3e-05 Score=75.81 Aligned_cols=204 Identities=12% Similarity=0.030 Sum_probs=112.3
Q ss_pred eEEeCCCCCEEEEEEeC-----CCCeEEEEEEEECCCCCeeec-ccc-------C-ccceeEEecCC-eEEEEEeCCCCC
Q 006375 85 CFQVSPDNKLVAYAEDT-----KGDEIYTVYVIDIETGTPVGK-PLV-------G-VTASVEWAGNE-ALVYITMDEILR 149 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~-----~G~e~~~l~v~dl~~g~~~~~-~~~-------~-~~~~~~WspDg-~l~y~~~~~~~~ 149 (648)
.+.|||||++|++.... .|+....|+++|+++++.+.. ..+ + ....++||||| ++++...+
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~---- 144 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG---- 144 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS----
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC----
Confidence 57899999999998643 355567899999999987632 111 1 12358999999 77665432
Q ss_pred CceEEEEECCCCCCCcEEEEeecCC-Ce-----EEEEEeCCCCcEEEEEEccc---------------------------
Q 006375 150 PDKAWLHKLEADQSNDICLYHEKDD-IY-----SLGLQASESKKFLFIASESK--------------------------- 196 (648)
Q Consensus 150 ~~~l~~~~l~~~~~~~~~~~~~~~~-~~-----~~~~~~s~Dg~~l~~~~~~~--------------------------- 196 (648)
...++.+++.++. .......+.. .. ...+..++||+.+++.....
T Consensus 145 ~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (368)
T d1mdah_ 145 SSAAAGLSVPGAS--DDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP 222 (368)
T ss_dssp SSCEEEEEETTTE--EEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred CCeEEEEECCCCc--EeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC
Confidence 3457788887762 2222221110 00 01235677887666653211
Q ss_pred ------cccEEEEEECCCCCceeEeeecc-------------cc-eeeeEeecCCEEEEEeccCC----CCCcEEEEEeC
Q 006375 197 ------ITRFVFYLDVSKPEELRVLTPRV-------------VG-VDTAASHRGNHFFITRRSDE----LFNSELLACPV 252 (648)
Q Consensus 197 ------~~~~l~~~dl~~~~~~~~l~~~~-------------~~-~~~~~s~dg~~l~~~~~~~~----~~~~~l~~~~~ 252 (648)
....++++++.... ...+.... .+ ....++++++.+|+...... ....+|+++|.
T Consensus 223 g~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~ 301 (368)
T d1mdah_ 223 GMLVWAVASSILQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301 (368)
T ss_dssp TEEEECBSSCCEEEECCSSC-CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred cEEEEecCCCEEEEeecCCc-eEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence 11245667766654 22221100 01 12458889998887765432 12247888898
Q ss_pred CCCCcceeEecCCCCcccceEEEe--CCEEEEEEecCCeeEEEEEEcCC
Q 006375 253 DNTSETTVLIPHRESVKLQDIQLF--IDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
.+..... .++.. ..+.++.+. ++.+++.... +...|++|+..+
T Consensus 302 ~t~~~~~-~~~~~--~~~~~~a~spDG~~~ly~s~~-~~~~v~v~D~~t 346 (368)
T d1mdah_ 302 SVGQTSG-PISNG--HDSDAIIAAQDGASDNYANSA-GTEVLDIYDAAS 346 (368)
T ss_dssp SSCCEEE-CCEEE--EEECEEEECCSSSCEEEEEET-TTTEEEEEESSS
T ss_pred CCCcEeE-EecCC--CceeEEEECCCCCEEEEEEeC-CCCeEEEEECCC
Confidence 7632221 22221 124444454 4444433332 235789998874
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.22 E-value=0.00011 Score=72.96 Aligned_cols=196 Identities=16% Similarity=0.096 Sum_probs=106.4
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc---cCccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL---VGVTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~---~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
.+..+.|||||++||-.. .+| +|+|||+.++..... .+ ......+.|+||+ .|+. ... ...-.+|..
T Consensus 53 ~V~~l~fsp~~~~l~s~s-~D~----~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~-~s~--d~~i~i~~~ 124 (371)
T d1k8kc_ 53 QVTGVDWAPDSNRIVTCG-TDR----NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAV-GSG--SRVISICYF 124 (371)
T ss_dssp CEEEEEEETTTTEEEEEE-TTS----CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEE-EET--TSSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEE-CCC----eEEEEeeccccccccccccccccccccccccccccccee-ecc--cCcceeeee
Confidence 467889999999987553 233 688999987764422 22 2224568999999 6554 432 223345554
Q ss_pred ECCCCCCCcEEEEee-cCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ce--------------eEeeec--
Q 006375 157 KLEADQSNDICLYHE-KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-EL--------------RVLTPR-- 218 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~-~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~--------------~~l~~~-- 218 (648)
+-... ........ ........+.|+|||++|+..+.+ ..+.++++.... .. ..+...
T Consensus 125 ~~~~~--~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D---~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (371)
T d1k8kc_ 125 EQEND--WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD---FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 199 (371)
T ss_dssp ETTTT--EEEEEEECTTCCSCEEEEEECTTSSEEEEEETT---SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred ecccc--cccccccccccccccccccccccccceeccccC---cEEEEEeeccCccccccccccccccccceeeeeeccC
Confidence 43332 11222111 112234568899999998754432 345666654432 00 111111
Q ss_pred -ccc-eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEE
Q 006375 219 -VVG-VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYR 296 (648)
Q Consensus 219 -~~~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~ 296 (648)
... ....|+|+|+.|+..+.. ..|...|+..+.....+..+.. .+..+.+.++.-++....++...++.++
T Consensus 200 ~~~~v~~~~~s~~g~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~--~v~s~~fs~d~~~la~g~d~~~~~~~~~ 272 (371)
T d1k8kc_ 200 SCGWVHGVCFSANGSRVAWVSHD-----STVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAGHDCFPVLFTYD 272 (371)
T ss_dssp CSSCEEEEEECSSSSEEEEEETT-----TEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEETTSSCEEEEEE
T ss_pred ccCcEEEEEeecccccccccccC-----CcceEEeeecccceeeeecccc--cceeeeecCCCCEEEEEcCCceEEEEee
Confidence 111 123589999987766543 4677888865332222333322 3556666665444445555555565554
Q ss_pred c
Q 006375 297 L 297 (648)
Q Consensus 297 ~ 297 (648)
.
T Consensus 273 ~ 273 (371)
T d1k8kc_ 273 S 273 (371)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.17 E-value=0.00011 Score=71.43 Aligned_cols=197 Identities=10% Similarity=0.023 Sum_probs=109.0
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
+..+.|||||++|+....... ..+.+++.++++...... ......++|+|++ .++.+...+ ..+..+++.
T Consensus 118 v~~v~~s~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d----~~v~~~d~~ 190 (325)
T d1pgua1 118 ISDISWDFEGRRLCVVGEGRD---NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD----GSVVFYQGP 190 (325)
T ss_dssp EEEEEECTTSSEEEEEECCSS---CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT----TEEEEEETT
T ss_pred EEEEEECCCCCccceeecccc---ceEEEEeecccccceeeeecccccccccccccccceEEEeecc----ccccccccc
Confidence 567899999999988764322 357788888887654221 2234458999999 666655432 346677766
Q ss_pred CCCCCcEEEEee--cCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce---eeeE-eecCCEE
Q 006375 160 ADQSNDICLYHE--KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV---DTAA-SHRGNHF 233 (648)
Q Consensus 160 ~~~~~~~~~~~~--~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~---~~~~-s~dg~~l 233 (648)
+.. ....... ........+.|+||+..++++... +..|.++|+.+++....+......+ .+.. .+||+.|
T Consensus 191 ~~~--~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l 266 (325)
T d1pgua1 191 PFK--FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 266 (325)
T ss_dssp TBE--EEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEE
T ss_pred ccc--cceecccccCCCCccEEeeeccccceecccccc--ccceeeeeeccccccccccccccccccceeeeeccCCCEE
Confidence 541 1111211 113345578899985444444332 2458888998876223333222221 2222 2678877
Q ss_pred EEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcc--cceEEEeCCEEEEEEecCCeeEEEEEEc
Q 006375 234 FITRRSDELFNSELLACPVDNTSETTVLIPHRESVK--LQDIQLFIDHLAVYEREGGLQKITTYRL 297 (648)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~l~v~~~ 297 (648)
+..+.+ ..|.+.|+......+.+..+..... ...+.+.++..++....++ .|.+|++
T Consensus 267 ~s~s~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg--~i~vwdl 325 (325)
T d1pgua1 267 ATVGAD-----ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG--TLNFYEL 325 (325)
T ss_dssp EEEETT-----SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS--CEEEEET
T ss_pred EEEeCC-----CeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCC--EEEEEEC
Confidence 655432 3577778876332222222332222 2345566665556666555 4555553
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.15 E-value=1.6e-05 Score=77.48 Aligned_cols=115 Identities=13% Similarity=0.147 Sum_probs=63.6
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc-cc-------CccceeEEecCC-eEEEEEeCCC-------
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP-LV-------GVTASVEWAGNE-ALVYITMDEI------- 147 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~-~~-------~~~~~~~WspDg-~l~y~~~~~~------- 147 (648)
.++.|||||++|..+...+| .|+++|+++++.+... .. .....++|+||| .++....+..
T Consensus 43 ~~l~~spDG~~l~v~~~~~~----~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~ 118 (346)
T d1jmxb_ 43 GTAMMAPDNRTAYVLNNHYG----DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118 (346)
T ss_dssp CEEEECTTSSEEEEEETTTT----EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ceEEECCCCCEEEEEECCCC----cEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeec
Confidence 47899999999876654444 7999999999876321 11 112458999999 6655443211
Q ss_pred CCCceEEEEECCCCCCCcE-EEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC
Q 006375 148 LRPDKAWLHKLEADQSNDI-CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE 210 (648)
Q Consensus 148 ~~~~~l~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~ 210 (648)
.....+..++..++..... .... .+.......+++|++.++. + .++.++++.+++
T Consensus 119 ~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~ 174 (346)
T d1jmxb_ 119 VKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAADDGSLYVA--G----PDIYKMDVKTGK 174 (346)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECTTSCEEEE--S----SSEEEECTTTCC
T ss_pred cCcceEEEEecccceeeeEEEeee--ccCceEEEEecCCCEEEEe--C----CcceEEEccCCC
Confidence 1223455555555421111 1111 1211122345777765442 1 346677776665
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.12 E-value=0.00087 Score=63.88 Aligned_cols=226 Identities=10% Similarity=0.021 Sum_probs=129.0
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSN 164 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~ 164 (648)
+|.|.++...|.|+ |..+ .+|+.+|+++++......+...+.+++.+||.+++... ..|++++..++ +
T Consensus 22 gp~wd~~~~~l~wv-Di~~---~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~~------~gl~~~d~~tg--~ 89 (295)
T d2ghsa1 22 GPTFDPASGTAWWF-NILE---RELHELHLASGRKTVHALPFMGSALAKISDSKQLIASD------DGLFLRDTATG--V 89 (295)
T ss_dssp EEEEETTTTEEEEE-EGGG---TEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEET------TEEEEEETTTC--C
T ss_pred CCeEECCCCEEEEE-ECCC---CEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEEe------CccEEeecccc--e
Confidence 68999988888775 4333 37999999999876555555556688989997766542 24889998877 2
Q ss_pred cEEEEeec-C-CC-eEEEEEeCCCCcEEEEEEccc---cccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEe
Q 006375 165 DICLYHEK-D-DI-YSLGLQASESKKFLFIASESK---ITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITR 237 (648)
Q Consensus 165 ~~~~~~~~-~-~~-~~~~~~~s~Dg~~l~~~~~~~---~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~ 237 (648)
.+.+.... + +. ...+....|+|+..+-..... ....+|.++ .++ .+.+...... .-..++++++.+|+..
T Consensus 90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~--~g~-~~~~~~~~~~~Ng~~~s~d~~~l~~~d 166 (295)
T d2ghsa1 90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFADISIPNSICFSPDGTTGYFVD 166 (295)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec--CCc-EEEEeeccCCcceeeecCCCceEEEee
Confidence 33333221 1 11 244677899997543322221 224566554 444 4544433221 2245899999988876
Q ss_pred ccCCCCCcEEEEEeCCCCC-----ccee-EecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCCCCCcccccCCC
Q 006375 238 RSDELFNSELLACPVDNTS-----ETTV-LIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPAVGEPLKSLQGG 310 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~ 310 (648)
.. ..+|++++++... .... +..........++..+.+ .+++.....+ +|.+++.+ |+.+
T Consensus 167 t~----~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g--~V~~~dp~--G~~~------ 232 (295)
T d2ghsa1 167 TK----VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG--AVDRYDTD--GNHI------ 232 (295)
T ss_dssp TT----TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT--EEEEECTT--CCEE------
T ss_pred cc----cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC--ceEEecCC--CcEe------
Confidence 54 3578888764311 1111 222223334667777775 4555444433 56766655 5543
Q ss_pred ceeecCCCeeeeeCCCC-cccccEEEEEEeeC
Q 006375 311 KSVEFIDPVYSIDPSES-VFSSRILRFHYSSL 341 (648)
Q Consensus 311 ~~i~~~~~~~~v~~~~~-~~~~~~l~~~~ss~ 341 (648)
..+.+|.+. +....+ -++.++|+++..+.
T Consensus 233 ~~i~lP~~~--~T~~~FGG~d~~~LyvTta~~ 262 (295)
T d2ghsa1 233 ARYEVPGKQ--TTCPAFIGPDASRLLVTSARE 262 (295)
T ss_dssp EEEECSCSB--EEEEEEESTTSCEEEEEEBCT
T ss_pred eEecCCCCc--eEEEEEeCCCCCEEEEEECCc
Confidence 355665432 111111 14567787776554
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.11 E-value=0.00069 Score=65.02 Aligned_cols=198 Identities=12% Similarity=0.094 Sum_probs=100.5
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc-cCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++||-.. .+| .|+|||+.+++.+.. .. ......++|+||+ .++....+.. +..++.
T Consensus 57 ~I~~l~~s~~~~~l~sgs-~Dg----~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~-----i~~~~~ 126 (340)
T d1tbga_ 57 KIYAMHWGTDSRLLVSAS-QDG----KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI-----CSIYNL 126 (340)
T ss_dssp CEEEEEECTTSSEEEEEE-TTT----EEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCC-----EEEEES
T ss_pred CEEEEEECCCCCEEEEEE-CCC----ceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccce-----eecccc
Confidence 467889999999987554 344 799999999886642 11 2234569999999 6655443221 222221
Q ss_pred CCCCCCcE----------------------EEEeecC--------------------CCeEEEEEeCCCCcEEEEEEccc
Q 006375 159 EADQSNDI----------------------CLYHEKD--------------------DIYSLGLQASESKKFLFIASESK 196 (648)
Q Consensus 159 ~~~~~~~~----------------------~~~~~~~--------------------~~~~~~~~~s~Dg~~l~~~~~~~ 196 (648)
........ ......+ ........+.+++..++...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 203 (340)
T d1tbga_ 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA--- 203 (340)
T ss_dssp SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE---
T ss_pred cccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEee---
Confidence 11100000 0000000 00011223344444433221
Q ss_pred cccEEEEEECCCCCceeEeeecccce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEE
Q 006375 197 ITRFVFYLDVSKPEELRVLTPRVVGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQL 275 (648)
Q Consensus 197 ~~~~l~~~dl~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (648)
....|.++|+.+++....+......+ ...|+|+|+.|+..+.. ..+...++.................+..+.+
T Consensus 204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d-----~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 278 (340)
T d1tbga_ 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeecccccccccccccccCceEEEEE
Confidence 23568888988775222233222222 24589999877655443 3567777765322221211222233555666
Q ss_pred eCCE-EEEEEecCCeeEEEEEEcCC
Q 006375 276 FIDH-LAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 276 ~~~~-l~~~~~~~~~~~l~v~~~~~ 299 (648)
.++. +++....++ .+.+|++..
T Consensus 279 s~~~~~l~~g~~dg--~i~iwd~~~ 301 (340)
T d1tbga_ 279 SKSGRLLLAGYDDF--NCNVWDALK 301 (340)
T ss_dssp CSSSCEEEEEETTS--CEEEEETTT
T ss_pred CCCCCEEEEEECCC--EEEEEECCC
Confidence 5542 334444444 577888763
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.10 E-value=0.00046 Score=68.11 Aligned_cols=248 Identities=14% Similarity=0.090 Sum_probs=124.3
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--------------------ccCccceeEEecCCeEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--------------------LVGVTASVEWAGNEALVY 141 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--------------------~~~~~~~~~WspDg~l~y 141 (648)
.+..++|||||++||-..+ | .|.|||+.+++..... -......++|+|||.+++
T Consensus 64 ~V~~l~fs~dg~~lasg~d--~----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~ 137 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATGCN--K----TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137 (388)
T ss_dssp CCCEEEECTTSSEEEEECB--S----CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cEEEEEECCCCCEEEEEeC--C----eEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence 4668899999999986432 3 6899999988764210 011134589999994444
Q ss_pred EEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc
Q 006375 142 ITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG 221 (648)
Q Consensus 142 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~ 221 (648)
+...+ ..|..++...+ +........ ......+.+++++..++..+. ...+.++|..+.. ..........
T Consensus 138 s~~~d----g~v~i~~~~~~--~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~-~~~~~~~~~~ 206 (388)
T d1erja_ 138 TGAED----RLIRIWDIENR--KIVMILQGH-EQDIYSLDYFPSGDKLVSGSG---DRTVRIWDLRTGQ-CSLTLSIEDG 206 (388)
T ss_dssp EEETT----SCEEEEETTTT--EEEEEECCC-SSCEEEEEECTTSSEEEEEET---TSEEEEEETTTTE-EEEEEECSSC
T ss_pred ecccc----ccccccccccc--ccccccccc-ccccccccccccccccccccc---ceeeeeeeccccc-cccccccccc
Confidence 44422 24777787765 222233222 233446788999988876543 3568888988765 2222222222
Q ss_pred -eeeeEe-ecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecC-----CCCcccceEEEeCC-EEEEEEecCCeeEEE
Q 006375 222 -VDTAAS-HRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPH-----RESVKLQDIQLFID-HLAVYEREGGLQKIT 293 (648)
Q Consensus 222 -~~~~~s-~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~ 293 (648)
....+. +++..|+..+.. ..|...+.........+... .....+..+.+..+ ..++....++ .+.
T Consensus 207 ~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~--~i~ 279 (388)
T d1erja_ 207 VTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR--SVK 279 (388)
T ss_dssp EEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS--EEE
T ss_pred cccccccCCCCCeEEEEcCC-----CeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC--cEE
Confidence 223344 456655444332 35777777653222111111 11123455666554 2333444444 567
Q ss_pred EEEcCCCCCcccc-cCCC-c-eeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 294 TYRLPAVGEPLKS-LQGG-K-SVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 294 v~~~~~~g~~~~~-l~~~-~-~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
++++......... .... . ..........+..+.+++++..+ ++.+. -..++.+|+.+++.
T Consensus 280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~sg~~---dg~i~vwd~~~~~~ 342 (388)
T d1erja_ 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI-LSGSK---DRGVLFWDKKSGNP 342 (388)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEE-EEEET---TSEEEEEETTTCCE
T ss_pred EEeccCCccccccccccccceeeecccccceEEEEEECCCCCEE-EEEeC---CCEEEEEECCCCcE
Confidence 7777632211000 0000 0 00000000112234455666643 33332 35789999998874
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.10 E-value=0.00019 Score=68.19 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=105.1
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
+..+.+||||+.++...+ + .+.+++.. +............++|+||+.++++... ...|..+++.++.
T Consensus 102 ~~~~~~s~~g~~~~~~~~--~----~i~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~g~~----dg~i~~~d~~~~~ 169 (299)
T d1nr0a2 102 PLGLAVSADGDIAVAACY--K----HIAIYSHG--KLTEVPISYNSSCVALSNDKQFVAVGGQ----DSKVHVYKLSGAS 169 (299)
T ss_dssp EEEEEECTTSSCEEEEES--S----EEEEEETT--EEEEEECSSCEEEEEECTTSCEEEEEET----TSEEEEEEEETTE
T ss_pred cccccccccccccccccc--c----cccccccc--cccccccccccccccccccccccccccc----ccccccccccccc
Confidence 456789999998876653 2 56777743 2222222223345899999944444432 2357777876652
Q ss_pred CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCcee---Eeeeccccee-eeEeecCCEEEEEec
Q 006375 163 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELR---VLTPRVVGVD-TAASHRGNHFFITRR 238 (648)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~---~l~~~~~~~~-~~~s~dg~~l~~~~~ 238 (648)
...+...........+.++|++++|+..+. ...|+++|+.++.... .+......+. ..|+|+|+.|+..+.
T Consensus 170 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~ 244 (299)
T d1nr0a2 170 --VSEVKTIVHPAEITSVAFSNNGAFLVATDQ---SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244 (299)
T ss_dssp --EEEEEEEECSSCEEEEEECTTSSEEEEEET---TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred --cccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccceEEEcC
Confidence 222222222334456789999999876543 3458889987765111 1111122222 458999997766554
Q ss_pred cCCCCCcEEEEEeCCCCCcceeEecCC-CCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 239 SDELFNSELLACPVDNTSETTVLIPHR-ESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
+ ..|.+.|+..+.....+.... ....+....+.++..++....++ .+.+|+++
T Consensus 245 d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~--~i~iWdl~ 298 (299)
T d1nr0a2 245 D-----NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS--NIKFWNVP 298 (299)
T ss_dssp T-----SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTS--CEEEEECC
T ss_pred C-----CEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCC--EEEEEecc
Confidence 3 357777887644333233222 12223333333333444555554 46666653
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.05 E-value=0.0012 Score=66.78 Aligned_cols=255 Identities=12% Similarity=0.017 Sum_probs=142.0
Q ss_pred CCCEEEEEEeCCCCeEEEEEEEECCCCCee--ec--cc-cC---ccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCC
Q 006375 91 DNKLVAYAEDTKGDEIYTVYVIDIETGTPV--GK--PL-VG---VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 161 (648)
Q Consensus 91 DG~~la~~~~~~G~e~~~l~v~dl~~g~~~--~~--~~-~~---~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~ 161 (648)
.|.+.-|.....+.....++.....+++.. .+ .. .+ ...++++|||+ .++|+....+.+...|+..++.++
T Consensus 82 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg 161 (430)
T d1qfma1 82 KGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA 161 (430)
T ss_dssp ETTEEEEEEECSSCSSCEEEEESSSSSCCEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT
T ss_pred eCCEEEEEEecCCCccceEEeccccCCCeeeecchhhhcccccceecceEecCCCCEEEEEeccccCchheeEEeccCcc
Confidence 555555555554444555666655444322 11 11 11 13457889999 999998888888899999999998
Q ss_pred CCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccc-------------cccEEEEEECCCCC-ceeEeeecccc----ee
Q 006375 162 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESK-------------ITRFVFYLDVSKPE-ELRVLTPRVVG----VD 223 (648)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~-------------~~~~l~~~dl~~~~-~~~~l~~~~~~----~~ 223 (648)
...+..+ ... . ..++.|++|++.|+++.... ....+|+..+.+.. .-..+...... ..
T Consensus 162 ~~~~~~i-~~~--~-~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~ 237 (430)
T d1qfma1 162 KELPDVL-ERV--K-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (430)
T ss_dssp EEEEEEE-EEE--C-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred eeccccc-ccc--c-ccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEe
Confidence 3211111 111 1 12568999999999876321 12579999988765 23444443322 12
Q ss_pred eeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCc-----cee--EecCCCCcccceEEEeCCEEEEEEecCCe-eEEEEE
Q 006375 224 TAASHRGNHFFITRRSDELFNSELLACPVDNTSE-----TTV--LIPHRESVKLQDIQLFIDHLAVYEREGGL-QKITTY 295 (648)
Q Consensus 224 ~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~l~v~ 295 (648)
...+.||+++++...........++.+++..... ..| +++.. .....-+...++.+++..+.++. .+|..+
T Consensus 238 ~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~ 316 (430)
T d1qfma1 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF-EGEYDYVTNEGTVFTFKTNRHSPNYRLINI 316 (430)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-SSCEEEEEEETTEEEEEECTTCTTCEEEEE
T ss_pred eeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeeccc-ccceEEEecCCceeecccCcccccceeEEe
Confidence 3478899988877665444556888888754211 111 33322 22233345566777777776653 466666
Q ss_pred EcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 296 RLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 296 ~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
+++.... .. ....+|.+...+........++.+++.+. -..-++|+.+++.+++.
T Consensus 317 ~~~~~~~--~~----w~~vi~~~~~~~~~~~~~~~~~~lvl~~~-~~~~~~l~v~~~~~~~~ 371 (430)
T d1qfma1 317 DFTDPEE--SK----WKVLVPEHEKDVLEWVACVRSNFLVLCYL-HDVKNTLQLHDLATGAL 371 (430)
T ss_dssp ETTBCCG--GG----CEEEECCCSSCEEEEEEEETTTEEEEEEE-ETTEEEEEEEETTTCCE
T ss_pred cCCCCcc--cc----ceEEecccCcceeeeEEEEECCEEEEEEE-cCCEeEEEEEECCCCcE
Confidence 6653211 10 11222322211211112233444555544 34556788899988873
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.01 E-value=0.0016 Score=62.22 Aligned_cols=124 Identities=15% Similarity=0.014 Sum_probs=76.3
Q ss_pred EEEEEECCCCCeeec-cccC---ccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCC----eEEE
Q 006375 108 TVYVIDIETGTPVGK-PLVG---VTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDI----YSLG 179 (648)
Q Consensus 108 ~l~v~dl~~g~~~~~-~~~~---~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~----~~~~ 179 (648)
+|.|+|+++++.+.. .... ....++++|||+.+|+.. .....|+.+++.+++ .+......... ....
T Consensus 12 ~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~---~~~~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~ 86 (337)
T d1pbyb_ 12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFG 86 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTC
T ss_pred EEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEE---CCCCeEEEEECCCCc--EEEEEecCCCcccccceee
Confidence 899999999987642 2221 234699999994444432 223569999998873 22222221111 1225
Q ss_pred EEeCCCCcEEEEEEccc---------cccEEEEEECCCCCceeEeeeccc-ceeeeEeecCCEEEEEe
Q 006375 180 LQASESKKFLFIASESK---------ITRFVFYLDVSKPEELRVLTPRVV-GVDTAASHRGNHFFITR 237 (648)
Q Consensus 180 ~~~s~Dg~~l~~~~~~~---------~~~~l~~~dl~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~~ 237 (648)
+.+||||+++++..... ....+.++|..+++ .....+... .....+++||+.++...
T Consensus 87 v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEAPRQITMLAWARDGSKLYGLG 153 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred EEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-EEEeccccCCceEEEEcCCCCEEEEEc
Confidence 68999999998765432 24578889998876 333222222 22356899999887653
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=2.1e-06 Score=81.40 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=56.6
Q ss_pred CCCcEEEEecCCCCCCCCCCCchhHHHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHH-HHHHHHHcCC
Q 006375 404 GSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIA-CAEYLIKNCY 481 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~ 481 (648)
.+.| ||++||+.++.. .|. .|+.+ ++.|+.+|.+|.|... .++++.+ .++.+.+.
T Consensus 24 ~~~P-l~l~Hg~~gs~~--~~~----~l~~~L~~~v~~~d~~g~~~~~--------------~~~~~a~~~~~~~~~~-- 80 (286)
T d1xkta_ 24 SERP-LFLVHPIEGSTT--VFH----SLASRLSIPTYGLQCTRAAPLD--------------SIHSLAAYYIDCIRQV-- 80 (286)
T ss_dssp CSCC-EEEECCTTCCCG--GGH----HHHHTCSSCEEEECCCTTSCCS--------------CHHHHHHHHHHHHHHH--
T ss_pred CCCe-EEEECCCCccHH--HHH----HHHHHcCCeEEEEeCCCCCCCC--------------CHHHHHHHHHHHHHHh--
Confidence 3456 779999877643 233 33333 7899999999876542 1233322 22333332
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecC
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAV 517 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~ 517 (648)
...+++.++|||+||.++..+|.++|++...++...
T Consensus 81 ~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~ 116 (286)
T d1xkta_ 81 QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHN 116 (286)
T ss_dssp CCSSCCEEEEETHHHHHHHHHHHHHHHC------CC
T ss_pred cCCCceEEeecCCccHHHHHHHHHHHHcCCCceeEE
Confidence 233789999999999999999999999877766554
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.98 E-value=0.0015 Score=61.39 Aligned_cols=152 Identities=14% Similarity=0.065 Sum_probs=87.8
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cc-cCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PL-VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~-~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++||-.. .+| +|+|||+.+++.... .. .+....++|+|++ .++....+. .+...+.
T Consensus 19 ~I~~l~~sp~~~~l~s~s-~Dg----~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 88 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSAS-EDA----TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM-----TIKLWDF 88 (317)
T ss_dssp CEEEEEECSSSSEEEEEE-SSS----CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS-----CCCEEET
T ss_pred CeEEEEEcCCCCEEEEEe-CCC----eEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc-----ccccccc
Confidence 577889999999887543 334 799999999886542 11 2234569999999 555443221 1233343
Q ss_pred CCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-eeeeEeecCCEEEEEe
Q 006375 159 EADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VDTAASHRGNHFFITR 237 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~~ 237 (648)
... +....+... ........++++++.++.... ...+.++|+.++.....+...... ....+++++..|+..+
T Consensus 89 ~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (317)
T d1vyhc1 89 QGF--ECIRTMHGH-DHNVSSVSIMPNGDHIVSASR---DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 162 (317)
T ss_dssp TSS--CEEECCCCC-SSCEEEEEECSSSSEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccc--ccccccccc-cccceeeeccCCCceEEeecc---CcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEe
Confidence 332 122222211 233446778999999875433 356778898887622333322222 2345888888765554
Q ss_pred ccCCCCCcEEEEEeCCC
Q 006375 238 RSDELFNSELLACPVDN 254 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~ 254 (648)
.. ..+...+...
T Consensus 163 ~d-----~~v~~~~~~~ 174 (317)
T d1vyhc1 163 ND-----QTVRVWVVAT 174 (317)
T ss_dssp TT-----SCEEEEETTT
T ss_pred CC-----CeEEEEeecc
Confidence 43 2455555543
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=6e-05 Score=70.57 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=59.6
Q ss_pred CCCcEEEEecCCCCCCCCC-CCchhHHHHHHC--CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcC
Q 006375 404 GSDPLLLYGYGSYEICNDP-AFNSSRLSLLDR--GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNC 480 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~~~~-~~~~~~~~l~~~--G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 480 (648)
.+.| ||++||-.++...+ .+......+.++ |+.|..+++..... .....+. ...+++..+.+...+++-
T Consensus 4 ~P~P-VVLvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~~~~---~~~~~~~----~~~~~~~~e~v~~~I~~~ 75 (279)
T d1ei9a_ 4 APLP-LVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLR---EDVENSF----FLNVNSQVTTVCQILAKD 75 (279)
T ss_dssp SSCC-EEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSSSHH---HHHHHHH----HSCHHHHHHHHHHHHHSC
T ss_pred CCCc-EEEECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCCCcc---cccccch----hhhHHHHHHHHHHHHHhc
Confidence 4456 66889955443332 334333444444 89999988653211 1111100 012344444443333332
Q ss_pred CCCCCeEEEEeeChhHHHHHHHHhhCCC-ceeEEEecC
Q 006375 481 YCTKEKLCIEGRSAGGLLIGAVLNMRPD-LFKAAVAAV 517 (648)
Q Consensus 481 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~~~a~v~~~ 517 (648)
..-.+++-++|+||||.++-+++.+.++ .++..|...
T Consensus 76 ~~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLg 113 (279)
T d1ei9a_ 76 PKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVG 113 (279)
T ss_dssp GGGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEES
T ss_pred cccccceeEEEEccccHHHHHHHHHcCCCCcceEEEEC
Confidence 2234689999999999999888888765 466666544
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=97.82 E-value=1e-05 Score=77.82 Aligned_cols=112 Identities=8% Similarity=0.028 Sum_probs=71.5
Q ss_pred CCCCcEEEEecCCCCCCCCCCCchhHHHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC
Q 006375 403 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 481 (648)
Q Consensus 403 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 481 (648)
+...|+++++||--+.............++.+ ++.|+++|.+.+... .+..+.... ...-+.+...+++|..+..
T Consensus 67 ~~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~~--~Y~~a~~n~--~~Vg~~ia~~i~~l~~~~g 142 (337)
T d1rp1a2 67 QTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQT--SYTQAANNV--RVVGAQVAQMLSMLSANYS 142 (337)
T ss_dssp CTTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHHSS--CHHHHHHHH--HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeeccccCc--chHHHHHHH--HHHHHHHHHHHHHHHHhcC
Confidence 34579999999954443332223333455555 599999999753321 222211111 1122455667777777666
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCc
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPF 519 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~ 519 (648)
+++++|-++|||+|+.+|+.+..+- ..+..++..-|.
T Consensus 143 ~~~~~vhlIGhSLGAhvAG~aG~~~-~~l~rItgLDPA 179 (337)
T d1rp1a2 143 YSPSQVQLIGHSLGAHVAGEAGSRT-PGLGRITGLDPV 179 (337)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTS-TTCCEEEEESCC
T ss_pred CChhheEEEeecHHHhhhHHHHHhh-ccccceeccCCC
Confidence 8999999999999999999887754 456666666554
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.81 E-value=0.0011 Score=63.86 Aligned_cols=201 Identities=13% Similarity=0.074 Sum_probs=105.6
Q ss_pred cEEEeeEEeCC--CCCEEEEEEeCCCCeEEEEEEEECCCCCeeec----------cccCccceeEEecCC-eEEEEEeCC
Q 006375 80 FYSVGCFQVSP--DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK----------PLVGVTASVEWAGNE-ALVYITMDE 146 (648)
Q Consensus 80 ~~~~~~~~~SP--DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~----------~~~~~~~~~~WspDg-~l~y~~~~~ 146 (648)
...+..++||| ||++||-. +.+| +|.|||+..++.... ...+....++|++|| .++....+
T Consensus 63 ~~~v~~v~fsP~~~g~~lasg-s~Dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~- 136 (325)
T d1pgua1 63 SSVVTTVKFSPIKGSQYLCSG-DESG----KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG- 136 (325)
T ss_dssp TSCEEEEEECSSTTCCEEEEE-ETTS----EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC-
T ss_pred CCCEEEEEEeeCCCCCEEEEE-eCCC----CEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc-
Confidence 34567889998 56777643 4445 688888876543210 111223469999999 77665532
Q ss_pred CCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec---ccce-
Q 006375 147 ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR---VVGV- 222 (648)
Q Consensus 147 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~---~~~~- 222 (648)
....+..++..++ +....+..+ ......+.|+|++.+++++... +..+.++|....+....+... ...+
T Consensus 137 --~~~~~~~~~~~~~--~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~--d~~v~~~d~~~~~~~~~~~~~~~~~~~v~ 209 (325)
T d1pgua1 137 --RDNFGVFISWDSG--NSLGEVSGH-SQRINACHLKQSRPMRSMTVGD--DGSVVFYQGPPFKFSASDRTHHKQGSFVR 209 (325)
T ss_dssp --SSCSEEEEETTTC--CEEEECCSC-SSCEEEEEECSSSSCEEEEEET--TTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred --ccceEEEEeeccc--ccceeeeec-ccccccccccccccceEEEeec--ccccccccccccccceecccccCCCCccE
Confidence 2223555666655 222222222 2334467899999887765543 345777887665411111111 1112
Q ss_pred eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEE--EeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 223 DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQ--LFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 223 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
...|+|++..+++....+ ..|..+|+........+-.+.....-..+. +..+..++....++ .+.+|++..
T Consensus 210 ~v~~~pd~~~~l~s~~~d----~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~--~i~iwd~~~ 282 (325)
T d1pgua1 210 DVEFSPDSGEFVITVGSD----RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA--TIRVWDVTT 282 (325)
T ss_dssp EEEECSTTCCEEEEEETT----CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS--EEEEEETTT
T ss_pred Eeeeccccceeccccccc----cceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCC--eEEEEECCC
Confidence 245899866555554432 357777876533222222222221111222 22233444555555 477888873
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.74 E-value=0.0033 Score=60.21 Aligned_cols=240 Identities=8% Similarity=0.042 Sum_probs=123.8
Q ss_pred eeEEeCCCCCEEEEEEeCCC----CeEEEEEEEECCCCCeeeccc------cCccceeEEecCCeEEEEEeCCCCCCceE
Q 006375 84 GCFQVSPDNKLVAYAEDTKG----DEIYTVYVIDIETGTPVGKPL------VGVTASVEWAGNEALVYITMDEILRPDKA 153 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G----~e~~~l~v~dl~~g~~~~~~~------~~~~~~~~WspDg~l~y~~~~~~~~~~~l 153 (648)
.++.|.|||+.... +..+ ....+|+.+|++++....... .+.-.++.+.+||.++|+... ...+
T Consensus 21 EGpa~d~dG~ly~~--~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~----~~~i 94 (314)
T d1pjxa_ 21 EGPVFDKNGDFYIV--APEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM----RLGL 94 (314)
T ss_dssp EEEEECTTSCEEEE--ETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET----TTEE
T ss_pred eEeEEeCCCCEEEE--ECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC----CCeE
Confidence 36899999985432 2222 112369999999987653211 112345899999944455432 2347
Q ss_pred EEEECCCCCCCcEEEE-eecCCC---eEEEEEeCCCCcEEEEEEcc-------------ccccEEEEEECCCCCceeEee
Q 006375 154 WLHKLEADQSNDICLY-HEKDDI---YSLGLQASESKKFLFIASES-------------KITRFVFYLDVSKPEELRVLT 216 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~-~~~~~~---~~~~~~~s~Dg~~l~~~~~~-------------~~~~~l~~~dl~~~~~~~~l~ 216 (648)
++++.++. ...+. ...+.. ...++.+.+||+. +++... .....||+++.++. ...+.
T Consensus 95 ~~~~~~g~---~~~~~~~~~~g~~~~~pndl~~d~~G~l-yvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~--~~~~~ 168 (314)
T d1pjxa_ 95 LVVQTDGT---FEEIAKKDSEGRRMQGCNDCAFDYEGNL-WITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ--MIQVD 168 (314)
T ss_dssp EEEETTSC---EEECCSBCTTSCBCBCCCEEEECTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC--EEEEE
T ss_pred EEEeCCCc---EEEEEeccccccccCCCcEEEECCCCCE-EEecCccCcccccccceeccCCceEEEEeecCc--eeEee
Confidence 78887654 22222 111111 1235678899964 444321 11347999987653 33333
Q ss_pred ecccc-eeeeEeecCC----EEEEEeccCCCCCcEEEEEeCCCCCccee--Ee---cCCCCcccceEEEeCCE-EEEEEe
Q 006375 217 PRVVG-VDTAASHRGN----HFFITRRSDELFNSELLACPVDNTSETTV--LI---PHRESVKLQDIQLFIDH-LAVYER 285 (648)
Q Consensus 217 ~~~~~-~~~~~s~dg~----~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~-l~~~~~ 285 (648)
..... .-..|+++++ .||+... .+.+|++++++..+.... ++ +........++.++.+. +++...
T Consensus 169 ~~~~~pNGi~~~~d~d~~~~~lyv~d~----~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~ 244 (314)
T d1pjxa_ 169 TAFQFPNGIAVRHMNDGRPYQLIVAET----PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEET----TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred CCcceeeeeEECCCCCcceeEEEEEee----cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc
Confidence 22211 1234777764 4555432 346888888754332211 21 11122235667777664 444433
Q ss_pred cCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECC
Q 006375 286 EGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMD 353 (648)
Q Consensus 286 ~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~ 353 (648)
. ..+|++++.+ ++.+. ..+..|... ...+.+.++++.|+++-+ .-.+++++++.
T Consensus 245 ~--~g~I~~~dp~--~g~~~-----~~i~~p~~~--~t~~afg~d~~~lyVt~~---~~g~i~~~~~~ 298 (314)
T d1pjxa_ 245 G--SSHIEVFGPD--GGQPK-----MRIRCPFEK--PSNLHFKPQTKTIFVTEH---ENNAVWKFEWQ 298 (314)
T ss_dssp T--TTEEEEECTT--CBSCS-----EEEECSSSC--EEEEEECTTSSEEEEEET---TTTEEEEEECS
T ss_pred C--CCEEEEEeCC--CCEEE-----EEEECCCCC--EEEEEEeCCCCEEEEEEC---CCCcEEEEECC
Confidence 2 3567777665 44321 234444321 112233456666665433 23578887764
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.70 E-value=2.3e-05 Score=75.27 Aligned_cols=114 Identities=10% Similarity=0.006 Sum_probs=73.6
Q ss_pred CCCCcEEEEecCCCCCCCCCCCchhHHHHHHC-CCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHHHHHHHHcCC
Q 006375 403 DGSDPLLLYGYGSYEICNDPAFNSSRLSLLDR-GFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIACAEYLIKNCY 481 (648)
Q Consensus 403 ~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~-G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 481 (648)
+...|+++++||--+.............++.+ .+.|+++|.+.+... .+..+.... ...-+.+...+++|..+..
T Consensus 67 ~~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~~--~Y~~a~~n~--~~Vg~~ia~~i~~l~~~~g 142 (338)
T d1bu8a2 67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRT--EYTQASYNT--RVVGAEIAFLVQVLSTEMG 142 (338)
T ss_dssp CTTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHSS--CHHHHHHHH--HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhccc--chHHHHHhH--HHHHHHHHHHHHHHHHhcC
Confidence 45679999999954433333223334456655 699999999743322 222221111 0112344456666666556
Q ss_pred CCCCeEEEEeeChhHHHHHHHHhhCCCceeEEEecCCcc
Q 006375 482 CTKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFV 520 (648)
Q Consensus 482 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~~~a~v~~~~~~ 520 (648)
+++++|-++|||+|+.+|+.+..+-+.++..++..-|..
T Consensus 143 ~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA~ 181 (338)
T d1bu8a2 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (338)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcceeEEEeccHHHHHHHHHHHhhccccccccccccCc
Confidence 899999999999999999999987776777777766643
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.60 E-value=0.0084 Score=57.09 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=39.4
Q ss_pred eCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-c-ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCC
Q 006375 88 VSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P-LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 161 (648)
Q Consensus 88 ~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~-~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~ 161 (648)
+++||++||-.. .+| +|+|||+.+++.+.. . -.+....++|+|++.|+-...+ ..|..+++...
T Consensus 19 ~~~~~~~l~tgs-~Dg----~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D-----~~i~iw~~~~~ 84 (355)
T d1nexb2 19 LQFEDNYVITGA-DDK----MIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD-----RTVRVWDIKKG 84 (355)
T ss_dssp EEEETTEEEEEE-TTT----EEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETT-----CCEEEEETTTT
T ss_pred EEECCCEEEEEe-CCC----eEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecc-----ccccccccccc
Confidence 567899887543 344 799999999886642 1 1223456999997765433322 23555555543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.60 E-value=0.019 Score=55.75 Aligned_cols=194 Identities=11% Similarity=0.033 Sum_probs=103.9
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccc--cCccceeEEecCC-eEEEEEeCCCCCCceEEEEEC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPL--VGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKL 158 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~--~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l 158 (648)
.+..+.|||||++|+-... +| .|+++|..+++...... ......+.|++++ .++.... ...+..+++
T Consensus 123 ~V~~l~~s~~~~~l~s~~~-dg----~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-----~~~i~~~d~ 192 (388)
T d1erja_ 123 YIRSVCFSPDGKFLATGAE-DR----LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-----DRTVRIWDL 192 (388)
T ss_dssp BEEEEEECTTSSEEEEEET-TS----CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSEEEEEET
T ss_pred CEEEEEECCCCCcceeccc-cc----cccccccccccccccccccccccccccccccccccccccc-----ceeeeeeec
Confidence 3678899999999886553 34 68999999887664321 2234458999999 6554332 234777777
Q ss_pred CCCCCCcEEEEeecCCCeEEEE-EeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-------ccce-eeeEeec
Q 006375 159 EADQSNDICLYHEKDDIYSLGL-QASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-------VVGV-DTAASHR 229 (648)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~-~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-------~~~~-~~~~s~d 229 (648)
.+. ......... ...... .+++|+++|+..+. +..|++++..++.....+... ...+ ...|+|+
T Consensus 193 ~~~--~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 265 (388)
T d1erja_ 193 RTG--QCSLTLSIE--DGVTTVAVSPGDGKYIAAGSL---DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265 (388)
T ss_dssp TTT--EEEEEEECS--SCEEEEEECSTTCCEEEEEET---TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred ccc--ccccccccc--cccccccccCCCCCeEEEEcC---CCeEEEeecccCccceeeccccccccCCCCCEEEEEECCC
Confidence 665 222222222 222233 34558887775443 245888998887622222111 1112 2458899
Q ss_pred CCEEEEEeccCCCCCcEEEEEeCCCCCcce---------e-EecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcC
Q 006375 230 GNHFFITRRSDELFNSELLACPVDNTSETT---------V-LIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 230 g~~l~~~~~~~~~~~~~l~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~ 298 (648)
|+.|+..+.. ..|...|+....... . .........+..+.+..+ ..++....++ .+.+|++.
T Consensus 266 ~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg--~i~vwd~~ 338 (388)
T d1erja_ 266 GQSVVSGSLD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR--GVLFWDKK 338 (388)
T ss_dssp SSEEEEEETT-----SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS--EEEEEETT
T ss_pred CCEEEEEECC-----CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC--EEEEEECC
Confidence 9877655443 356666664321110 0 111111122445555443 2334444444 57888887
Q ss_pred C
Q 006375 299 A 299 (648)
Q Consensus 299 ~ 299 (648)
.
T Consensus 339 ~ 339 (388)
T d1erja_ 339 S 339 (388)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.48 E-value=0.00056 Score=68.11 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=79.3
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-----cc---cCccceeEEecCC-eEEEEEeCCCCCCceEE
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-----PL---VGVTASVEWAGNE-ALVYITMDEILRPDKAW 154 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-----~~---~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~ 154 (648)
..+.||||| +|| +...+| .|+|||+.+++.... .. ......++|+||| .|+-...|.. ...+.
T Consensus 188 ~~v~~s~dg-~la-sgs~Dg----~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t--~~~i~ 259 (393)
T d1sq9a_ 188 TSVDISERG-LIA-TGFNNG----TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS--FGCIT 259 (393)
T ss_dssp CEEEECTTS-EEE-EECTTS----EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT--EEEEE
T ss_pred EEEEECCCC-EEE-EEeCCC----cEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCC--cceee
Confidence 357899999 444 433334 799999999876521 11 1224459999999 5544433321 23366
Q ss_pred EEECCCCCCCcEEEEee------------cCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccce
Q 006375 155 LHKLEADQSNDICLYHE------------KDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGV 222 (648)
Q Consensus 155 ~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~ 222 (648)
.+++.++. ....+.. ........+.|+|||++|+-.+ .+..|.++|+++++....+..+...+
T Consensus 260 lwd~~~g~--~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s---~D~~v~vWd~~~g~~~~~l~gH~~~v 334 (393)
T d1sq9a_ 260 LYETEFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG---WDGKLRFWDVKTKERITTLNMHCDDI 334 (393)
T ss_dssp EEETTTCC--EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE---TTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred ecccccce--eeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC---CCCEEEEEECCCCCEEEEECCcCCcc
Confidence 67777762 1222211 1123355789999999886332 34678999999886333344333322
Q ss_pred e-----eeEeecCCEE
Q 006375 223 D-----TAASHRGNHF 233 (648)
Q Consensus 223 ~-----~~~s~dg~~l 233 (648)
. ..++++|..+
T Consensus 335 ~~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 335 EIEEDILAVDEHGDSL 350 (393)
T ss_dssp SSGGGCCCBCTTSCBC
T ss_pred cCCccEEEECCCCCEE
Confidence 2 3467777643
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.46 E-value=0.0047 Score=61.45 Aligned_cols=105 Identities=10% Similarity=-0.029 Sum_probs=58.9
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-cccCc--cceeEEecCC-eEEEEEeCCCC---------
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLVGV--TASVEWAGNE-ALVYITMDEIL--------- 148 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~~~--~~~~~WspDg-~l~y~~~~~~~--------- 148 (648)
.+.....+||||+| |..+... .+|.++|+++++.... .++.. ..+++++||| +.|.....+..
T Consensus 73 ~~s~t~gtpDGr~l-fV~d~~~---~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 73 HISMTDGRYDGKYL-FINDKAN---TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp EEEEETTEEEEEEE-EEEETTT---TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred CcceecccCCCCEE-EEEcCCC---CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 34445568999997 5555444 3799999999986542 34332 3458999999 55443321110
Q ss_pred ----CC-ceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEc
Q 006375 149 ----RP-DKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASE 194 (648)
Q Consensus 149 ----~~-~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~ 194 (648)
.. ..+-.++..+..... .+....++ ..+.++|||+++++++.
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~-qI~v~~~p---~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAW-QVIVDGNL---DNTDADYTGKYATSTCY 195 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEE-EEEESSCC---CCEEECSSSSEEEEEES
T ss_pred cccccccceEEeecCccceeeE-EEecCCCc---cceEECCCCCEEEEEec
Confidence 00 112234444432111 11111122 24678999999998764
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.45 E-value=0.027 Score=48.47 Aligned_cols=236 Identities=17% Similarity=0.125 Sum_probs=134.1
Q ss_pred EeCCCCCEEEEEEeC-CCCeEEEEEEEECCC-CCeeeccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCC
Q 006375 87 QVSPDNKLVAYAEDT-KGDEIYTVYVIDIET-GTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQS 163 (648)
Q Consensus 87 ~~SPDG~~la~~~~~-~G~e~~~l~v~dl~~-g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~ 163 (648)
..-+.=.+|.|..|. .|.|.+.|++.+++- |+......+....-++-.-|+ .++|+.... .+++++.++.+
T Consensus 61 ~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yddk~vvF~Gase----d~~~LYviegG-- 134 (313)
T d2hu7a1 61 DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATE----DRVALYALDGG-- 134 (313)
T ss_dssp EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCSBEEEEEEECSSCEEEEEECS----SCEEEEEEETT--
T ss_pred CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCceEEEEEeeecCceEEEecccC----CceEEEEEeCC--
Confidence 344555678888775 588999999999982 444433333311224455677 999988632 22455555555
Q ss_pred CcEEEEeecCCCeEEEEEeCCCCcEEEEEE-ccccccEEEEEECCCCCceeEeeeccccee-eeEeecCCEEEEEeccCC
Q 006375 164 NDICLYHEKDDIYSLGLQASESKKFLFIAS-ESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRRSDE 241 (648)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~-~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~~~~~~ 241 (648)
+-..+..- +.|.+--.. .|++|+=.. -..+...+++.|+.++. ++.+++.+..+. .+.+++.+. +++.+.
T Consensus 135 klrkL~~v--PpFsFVtDI--~~d~I~G~g~~~g~~~sfF~adl~SG~-lri~tpkeGS~~~ay~~~gnKV---~sdyEt 206 (313)
T d2hu7a1 135 GLRELARL--PGFGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGG-LRVFDSGEGSFSSASISPGMKV---TAGLET 206 (313)
T ss_dssp EEEEEEEE--SSCEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTEE-EEEECCSSEEEEEEEECTTSCE---EEEEEE
T ss_pred ceeeeccC--CCcceEEec--cCCeEEEEeeecCCcceEEEEecccCC-EEEecCCCCcccceeEccCcee---eeccCC
Confidence 22223222 333221111 355665322 22334568999998876 888887665443 346666653 444434
Q ss_pred CCCcEEEEEeCCCCCcceeEecCCCC-----cccceEEEeC-CEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeec
Q 006375 242 LFNSELLACPVDNTSETTVLIPHRES-----VKLQDIQLFI-DHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEF 315 (648)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~ 315 (648)
.....+..+|+.+..-.+.-+|+.+- +.+..+-.++ +.+++..+++|.+.+.+ + |+ .+..
T Consensus 207 ~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~---n--Gk---------~in~ 272 (313)
T d2hu7a1 207 AREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI---D--GE---------RVEA 272 (313)
T ss_dssp SSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE---T--TE---------EECC
T ss_pred CCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee---c--ce---------EecC
Confidence 44556667788753333334444321 1122222344 46878889999988773 3 32 3443
Q ss_pred CCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 316 IDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
|. +.+.+. ..=++.++|+.+|..+|.++..+ .+|+
T Consensus 273 p~--G~~~ga--t~i~~~iyfshsSL~tP~kI~~~--~~~~ 307 (313)
T d2hu7a1 273 PQ--GNHGRV--VLWRGKLVTSHTSLSTPPRIVSL--PSGE 307 (313)
T ss_dssp CS--SEEEEE--EEETTEEEEEEEETTEEEEEEEE--TTCC
T ss_pred CC--Ccccce--EEECCEEEEeecccCCCceeEEc--CCCC
Confidence 32 233221 12246799999999999998765 5555
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.42 E-value=0.0066 Score=56.69 Aligned_cols=190 Identities=13% Similarity=0.091 Sum_probs=103.6
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.+....++|+++.++.... ++ .+.++|+.+++..... .......++|+||+.++++...+ ..++.+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~-d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~v~~~~~~ 173 (317)
T d1vyhc1 103 NVSSVSIMPNGDHIVSASR-DK----TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND----QTVRVWVVA 173 (317)
T ss_dssp CEEEEEECSSSSEEEEEET-TS----EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT----SCEEEEETT
T ss_pred cceeeeccCCCceEEeecc-Cc----ceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCC----CeEEEEeec
Confidence 4567889999999876543 33 7889999998865421 12234568999999444444322 237777776
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCc--------------------EEEEEEccccccEEEEEECCCCCceeEeeecc
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKK--------------------FLFIASESKITRFVFYLDVSKPEELRVLTPRV 219 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~--------------------~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~ 219 (648)
+.. ....+... ......+.++|++. .++..+ ....|+++|+.+++....+....
T Consensus 174 ~~~--~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~~~~~~~~~ 247 (317)
T d1vyhc1 174 TKE--CKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS---RDKTIKMWDVSTGMCLMTLVGHD 247 (317)
T ss_dssp TCC--EEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE---TTSEEEEEETTTTEEEEEEECCS
T ss_pred cce--eeEEEecC-CCCceEEEEeeccccceeeccccceeeeeccCCceeEecc---CCCEEEEEECCCCcEEEEEeCCC
Confidence 652 22222222 12222344555433 232211 23568888988876222333222
Q ss_pred cce-eeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEE
Q 006375 220 VGV-DTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTY 295 (648)
Q Consensus 220 ~~~-~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~ 295 (648)
..+ ...++|+|+.|+..+.. ..|.+.|+.+......+-.+.. .+..+.+.++ .+++....++. |.+|
T Consensus 248 ~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~h~~--~V~~~~~s~~~~~l~s~s~Dg~--i~iW 316 (317)
T d1vyhc1 248 NWVRGVLFHSGGKFILSCADD-----KTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAPYVVTGSVDQT--VKVW 316 (317)
T ss_dssp SCEEEEEECSSSSCEEEEETT-----TEEEEECCTTSCCCEEEECCSS--CEEEEEECSSSSCEEEEETTSE--EEEE
T ss_pred CCEEEEEECCCCCEEEEEECC-----CeEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCe--EEEe
Confidence 222 24588999877655442 4688888876433332333332 3555666543 23344445553 4444
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=97.40 E-value=0.0002 Score=66.96 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=63.9
Q ss_pred CCcEEEEecCCCCCCCCCCCchhHHHHHHCCCEEEEEccCCCCCCChhhhhcccccCCCCcHhHHHHH-HHHHHHcCCCC
Q 006375 405 SDPLLLYGYGSYEICNDPAFNSSRLSLLDRGFIFAIAQIRGGGELGRQWYENGKFLKKKNTFTDFIAC-AEYLIKNCYCT 483 (648)
Q Consensus 405 ~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~~~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d 483 (648)
..|.|+++||.+.......|...+..|.. .+.|+.++.+|.+.. .....+++++.+. ++.+.+.. .
T Consensus 41 ~~~~l~c~~~~~~gg~~~~y~~La~~L~~-~~~V~al~~pG~~~~----------e~~~~s~~~~a~~~~~~i~~~~--~ 107 (255)
T d1mo2a_ 41 GEVTVICCAGTAAISGPHEFTRLAGALRG-IAPVRAVPQPGYEEG----------EPLPSSMAAVAAVQADAVIRTQ--G 107 (255)
T ss_dssp CSSEEEEECCCSSSCSGGGGHHHHHHHTT-TCCEEEECCTTSSTT----------CCEESSHHHHHHHHHHHHHHTT--S
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCCcCCC----------CCCCCCHHHHHHHHHHHHHHhC--C
Confidence 46899999985433333446655555543 589999999986531 1112356666664 34454432 2
Q ss_pred CCeEEEEeeChhHHHHHHHHhhC---CCceeEEEecC
Q 006375 484 KEKLCIEGRSAGGLLIGAVLNMR---PDLFKAAVAAV 517 (648)
Q Consensus 484 ~~~i~i~G~S~GG~l~~~~~~~~---p~~~~a~v~~~ 517 (648)
...+.++|||+||.++..++.+. ...+..+|+..
T Consensus 108 ~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvlld 144 (255)
T d1mo2a_ 108 DKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLID 144 (255)
T ss_dssp SSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEEE
T ss_pred CCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEEC
Confidence 36799999999999999888753 33466666544
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.40 E-value=0.011 Score=55.71 Aligned_cols=154 Identities=8% Similarity=0.036 Sum_probs=82.1
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee---cc--ccCccceeEEecCC-eEEEEEeCCCCCCceEEE
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG---KP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~---~~--~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~ 155 (648)
.+..++|||||++||-... +| +|+|||++++.... .. -.+....++|+|++ .++++...+ ..|+.
T Consensus 13 ~I~~l~fsp~~~~L~s~s~-Dg----~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d----~~v~~ 83 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSW-DG----SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ----GEILK 83 (342)
T ss_dssp CEEEEEEEGGGTEEEEEET-TS----EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT----SCEEE
T ss_pred CEEEEEEeCCCCEEEEEEC-CC----eEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc----cceee
Confidence 3678999999999987653 34 78899987654321 11 12234569999987 777766432 34777
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCC-ceeEeeecc------cceeeeEee
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPE-ELRVLTPRV------VGVDTAASH 228 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~-~~~~l~~~~------~~~~~~~s~ 228 (648)
+++.... .................+.+++..++..+. ...+.++|+.++. ......... ......+.+
T Consensus 84 w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (342)
T d1yfqa_ 84 VDLIGSP--SFQALTNNEANLGICRICKYGDDKLIAASW---DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp ECSSSSS--SEEECBSCCCCSCEEEEEEETTTEEEEEET---TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred eeccccc--cccccccccccccccccccccccccccccc---ccccceeeccccccceeeecccccccccceeeeeeeec
Confidence 7777652 222222222222222334455555543332 2445666665433 111111110 111234667
Q ss_pred cCCEEEEEeccCCCCCcEEEEEeCCC
Q 006375 229 RGNHFFITRRSDELFNSELLACPVDN 254 (648)
Q Consensus 229 dg~~l~~~~~~~~~~~~~l~~~~~~~ 254 (648)
++..++..+.. ..+...++..
T Consensus 159 ~~~~~~~~~~d-----~~i~~~~~~~ 179 (342)
T d1yfqa_ 159 NSSRLIVGMNN-----SQVQWFRLPL 179 (342)
T ss_dssp CSSEEEEEEST-----TEEEEEESSC
T ss_pred cCCceeeecCC-----CcEEEEeccc
Confidence 77766655543 3566667654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.37 E-value=0.012 Score=55.99 Aligned_cols=184 Identities=13% Similarity=0.056 Sum_probs=106.2
Q ss_pred EeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCC
Q 006375 87 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQS 163 (648)
Q Consensus 87 ~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~ 163 (648)
.+.++|+.++..... ..|.++|+.+++..... .........|+|++ .++....+ ..|+.+++.++
T Consensus 166 ~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~-- 233 (355)
T d1nexb2 166 TVSGHGNIVVSGSYD-----NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENG-- 233 (355)
T ss_dssp EEEEETTEEEEEETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTC--
T ss_pred ccccccceeeeeccc-----ceeeeeecccccceeeeeccccccccccccccceeeeccccc-----ceEEeeecccc--
Confidence 456778877765432 26889999988765422 22234558899999 66554432 34778888776
Q ss_pred CcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc-ee-eeEeecCCEEEEEeccCC
Q 006375 164 NDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG-VD-TAASHRGNHFFITRRSDE 241 (648)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~-~~-~~~s~dg~~l~~~~~~~~ 241 (648)
.....+..... ....+.+ ++++|+..+. +..|+++|+.+.. . .+...... .. ..+++++. ++....+
T Consensus 234 ~~~~~~~~h~~-~v~~~~~--~~~~l~~~~~---dg~i~iwd~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~l~~g~d-- 302 (355)
T d1nexb2 234 ELMYTLQGHTA-LVGLLRL--SDKFLVSAAA---DGSIRGWDANDYS-R-KFSYHHTNLSAITTFYVSDN-ILVSGSE-- 302 (355)
T ss_dssp CEEEEECCCSS-CCCEEEE--CSSEEEEECT---TSEEEEEETTTCC-E-EEEEECTTCCCCCEEEECSS-EEEEEET--
T ss_pred ccccccccccc-ccccccc--ccceeeeeec---ccccccccccccc-e-ecccccCCceEEEEEcCCCC-EEEEEeC--
Confidence 23333332222 2223444 4566654332 3568899998875 2 23222222 22 23566665 4444332
Q ss_pred CCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEc
Q 006375 242 LFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRL 297 (648)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~ 297 (648)
..|.+.|++++......+... ...+..+.+.++.+++....+|...|++++.
T Consensus 303 ---~~i~vwd~~tg~~~~~~~~~~-~~~V~~v~~~~~~~~~~~s~dg~~~l~~~df 354 (355)
T d1nexb2 303 ---NQFNIYNLRSGKLVHANILKD-ADQIWSVNFKGKTLVAAVEKDGQSFLEILDF 354 (355)
T ss_dssp ---TEEEEEETTTCCBCCSCTTTT-CSEEEEEEEETTEEEEEEESSSCEEEEEEEC
T ss_pred ---CEEEEEECCCCCEEEEEecCC-CCCEEEEEEcCCeEEEEEECCCcEEEEEEeC
Confidence 368888987643322222222 2246778888998888888888777887764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.35 E-value=0.015 Score=55.50 Aligned_cols=207 Identities=12% Similarity=0.083 Sum_probs=110.1
Q ss_pred eeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcc-ccccEEEEEECCC
Q 006375 130 SVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES-KITRFVFYLDVSK 208 (648)
Q Consensus 130 ~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~dl~~ 208 (648)
+++|.+||.||++-. ...+|++++..+. +....+.+. .....++++++||+.++..... .....++.++..+
T Consensus 44 G~~~D~~G~Ly~~D~----~~g~I~ri~p~g~--~~~~~~~~~-~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 44 GLNFDRQGQLFLLDV----FEGNIFKINPETK--EIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp EEEECTTSCEEEEET----TTCEEEEECTTTC--CEEEEEECS-SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred eCEECCCCCEEEEEC----CCCEEEEEECCCC--eEEEEEeCC-CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence 589999998777532 2346888887765 222333222 2334477899999866543322 2346788888877
Q ss_pred CCceeEeeeccc-c---eeeeEeecCCEEEEEeccC--CCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEE
Q 006375 209 PEELRVLTPRVV-G---VDTAASHRGNHFFITRRSD--ELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHL 280 (648)
Q Consensus 209 ~~~~~~l~~~~~-~---~~~~~s~dg~~l~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l 280 (648)
.. ...+..... . ....++++|+ ||+..... ......+++++.++ +..+.+... . ....++.++. +.+
T Consensus 117 ~~-~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~-~-~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 117 DN-LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQN-I-SVANGIALSTDEKVL 191 (319)
T ss_dssp CS-CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEE-E-SSEEEEEECTTSSEE
T ss_pred ce-eeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccc-ceeEEEeec-c-ceeeeeeeccccceE
Confidence 66 444332211 1 1245788886 77765431 12345788888765 222223221 1 1234566654 456
Q ss_pred EEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 281 AVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 281 ~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
++.... ..+|+.++++..+.............+... ..-.++..|.+++ |+++.. ....|.++++ +|+
T Consensus 192 yvad~~--~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~-~~PdGl~vD~~G~-l~Va~~---~~g~V~~~~p-~G~ 259 (319)
T d2dg1a1 192 WVTETT--ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMY---GQGRVLVFNK-RGY 259 (319)
T ss_dssp EEEEGG--GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEE---TTTEEEEECT-TSC
T ss_pred EEeccc--CCceEEEEEcCCCceeccccceeeeccCCc-cceeeeeEcCCCC-EEEEEc---CCCEEEEECC-CCc
Confidence 655543 347888888754432211000001111110 0112344556666 555443 3478999997 455
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.35 E-value=0.012 Score=57.39 Aligned_cols=161 Identities=9% Similarity=0.013 Sum_probs=79.6
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCC-CCeeec-c----ccC-ccceeEEecCCeEEEEEeCCCCCCceEEE
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIET-GTPVGK-P----LVG-VTASVEWAGNEALVYITMDEILRPDKAWL 155 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~-g~~~~~-~----~~~-~~~~~~WspDg~l~y~~~~~~~~~~~l~~ 155 (648)
..++.+||||++|... +. |.+ .|++++... +..... . ..+ --..++++|||.++|+.. ....+|..
T Consensus 147 ~h~v~~sPdG~~l~v~-d~-g~d--~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~---e~~~~V~v 219 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSA-DL-TAN--KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALM---EAGNRICE 219 (365)
T ss_dssp EEEEEECTTSSEEEEE-ET-TTT--EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEE---TTTTEEEE
T ss_pred ceEEEECCCCCEEEEe-eC-CCC--EEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEec---cCCCEEEE
Confidence 4578999999998655 43 332 456665443 333211 1 111 123489999996556654 22345777
Q ss_pred EECCCCCCCcEEEEeec-------------C---CCeEEEEEeCCCCcEEEEEEcccc---ccEEEEEECCCCCceeEe-
Q 006375 156 HKLEADQSNDICLYHEK-------------D---DIYSLGLQASESKKFLFIASESKI---TRFVFYLDVSKPEELRVL- 215 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~-------------~---~~~~~~~~~s~Dg~~l~~~~~~~~---~~~l~~~dl~~~~~~~~l- 215 (648)
+++++............ . ......+.++|||++|++...... ...|..+++.........
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~ 299 (365)
T d1jofa_ 220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL 299 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe
Confidence 77665422111111100 0 112345789999999987532211 234555544332112211
Q ss_pred --ee----cccceeeeEee-cCCEEEEEeccCCCCCcEEEEEeC
Q 006375 216 --TP----RVVGVDTAASH-RGNHFFITRRSDELFNSELLACPV 252 (648)
Q Consensus 216 --~~----~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~ 252 (648)
.. ........++| +|++|| +++. ......+++++.
T Consensus 300 ~~~~~~~~G~~p~~i~~~p~~G~~l~-va~~-~s~~v~v~~~~~ 341 (365)
T d1jofa_ 300 FLSPTPTSGGHSNAVSPCPWSDEWMA-ITDD-QEGWLEIYRWKD 341 (365)
T ss_dssp EEEECSSCCTTCCCEEECTTCTTEEE-EECS-SSCEEEEEEEET
T ss_pred EeeEEEcCCCCccEEEecCCCCCEEE-EEeC-CCCeEEEEEEeC
Confidence 11 11112245777 677654 4454 234455555554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.27 E-value=0.076 Score=49.69 Aligned_cols=196 Identities=13% Similarity=0.052 Sum_probs=107.1
Q ss_pred eeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCC
Q 006375 130 SVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 208 (648)
Q Consensus 130 ~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~ 208 (648)
++.|.+++ .|+|+-. ...+|++++..++ ...++..+ .....+.+.+||+.++. + ...|+++|.++
T Consensus 22 gp~wd~~~~~l~wvDi----~~~~I~r~d~~~g---~~~~~~~~--~~~~~i~~~~dg~l~va-~----~~gl~~~d~~t 87 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNI----LERELHELHLASG---RKTVHALP--FMGSALAKISDSKQLIA-S----DDGLFLRDTAT 87 (295)
T ss_dssp EEEEETTTTEEEEEEG----GGTEEEEEETTTT---EEEEEECS--SCEEEEEEEETTEEEEE-E----TTEEEEEETTT
T ss_pred CCeEECCCCEEEEEEC----CCCEEEEEECCCC---eEEEEECC--CCcEEEEEecCCCEEEE-E----eCccEEeeccc
Confidence 59999876 9988643 2356999998886 23444433 22334567788876653 2 24699999999
Q ss_pred CCceeEeeeccc---c---eeeeEeecCCEEEEEeccCC--CCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--C
Q 006375 209 PEELRVLTPRVV---G---VDTAASHRGNHFFITRRSDE--LFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--D 278 (648)
Q Consensus 209 ~~~~~~l~~~~~---~---~~~~~s~dg~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 278 (648)
++ .+.+..... . .+..++++|. ||+.+.... .....+++.+- +..+.+...-. ...++.+.. +
T Consensus 88 g~-~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~---g~~~~~~~~~~--~~Ng~~~s~d~~ 160 (295)
T d2ghsa1 88 GV-LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAK---GKVTKLFADIS--IPNSICFSPDGT 160 (295)
T ss_dssp CC-EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEET---TEEEEEEEEES--SEEEEEECTTSC
T ss_pred ce-eeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecC---CcEEEEeeccC--CcceeeecCCCc
Confidence 87 666543221 1 1234788886 777765322 23456666653 22222332111 133455554 4
Q ss_pred EEEEEEecCCeeEEEEEEcCCCCCcccccCCCce--eecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 279 HLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKS--VEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 279 ~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~--i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
.+++... ...+|+.++++....... .... +.++.......++..|.+++ +++..- ....|++||+. |+
T Consensus 161 ~l~~~dt--~~~~I~~~~~d~~~~~~~---~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~---~~g~V~~~dp~-G~ 230 (295)
T d2ghsa1 161 TGYFVDT--KVNRLMRVPLDARTGLPT---GKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARW---GEGAVDRYDTD-GN 230 (295)
T ss_dssp EEEEEET--TTCEEEEEEBCTTTCCBS---SCCEEEEECTTSSSEEEEEEECTTSC-EEEEEE---TTTEEEEECTT-CC
T ss_pred eEEEeec--ccceeeEeeecccccccc---cceEEEeccCcccccccceEEcCCCC-EEeeee---CCCceEEecCC-Cc
Confidence 5555443 345788888875433211 1111 22222221223345567776 444432 23689999975 55
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.27 E-value=0.016 Score=56.59 Aligned_cols=163 Identities=12% Similarity=0.135 Sum_probs=79.9
Q ss_pred ceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEe--ecC-CCeEEEEEeCCCCcEEEEEEccccccEEEEEE
Q 006375 129 ASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYH--EKD-DIYSLGLQASESKKFLFIASESKITRFVFYLD 205 (648)
Q Consensus 129 ~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--~~~-~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 205 (648)
..+.|+|||+.+|+... ...+|+.+++..... ...+-. ... ..--..+.++|||+++++... ..+.|.+++
T Consensus 148 h~v~~sPdG~~l~v~d~---g~d~v~~~~~~~~g~-~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e--~~~~V~v~~ 221 (365)
T d1jofa_ 148 HGMVFDPTETYLYSADL---TANKLWTHRKLASGE-VELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYV 221 (365)
T ss_dssp EEEEECTTSSEEEEEET---TTTEEEEEEECTTSC-EEEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEE
T ss_pred eEEEECCCCCEEEEeeC---CCCEEEEEEccCCCc-eeeccceeecCCCCceEEEEECCCCceEEEecc--CCCEEEEEE
Confidence 46999999944455442 234588777654421 111111 111 112235688999998876543 345677777
Q ss_pred CCCCC--ceeEe-----eec-------------ccceeeeEeecCCEEEEEeccCC-CCCcEEEEEeCCCCCcce--e-E
Q 006375 206 VSKPE--ELRVL-----TPR-------------VVGVDTAASHRGNHFFITRRSDE-LFNSELLACPVDNTSETT--V-L 261 (648)
Q Consensus 206 l~~~~--~~~~l-----~~~-------------~~~~~~~~s~dg~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~--~-~ 261 (648)
.++++ ....+ .+. .......++|||++||......+ .....|....+...+... . +
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~ 301 (365)
T d1jofa_ 222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL 301 (365)
T ss_dssp ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE
T ss_pred ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEe
Confidence 66554 11111 000 00123458999998876543211 122345444443322211 1 1
Q ss_pred ec-CCCCcccceEEEe---CCEEEEEEecCCeeEEEEEEcCC
Q 006375 262 IP-HRESVKLQDIQLF---IDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 262 ~~-~~~~~~~~~~~~~---~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
.. ........++.++ ++++++.. .....|.+++++.
T Consensus 302 ~~~~~~G~~p~~i~~~p~~G~~l~va~--~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 302 SPTPTSGGHSNAVSPCPWSDEWMAITD--DQEGWLEIYRWKD 341 (365)
T ss_dssp EECSSCCTTCCCEEECTTCTTEEEEEC--SSSCEEEEEEEET
T ss_pred eEEEcCCCCccEEEecCCCCCEEEEEe--CCCCeEEEEEEeC
Confidence 11 1112234556654 34555443 3345777887763
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.25 E-value=0.012 Score=55.75 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=86.1
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecc--ccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKP--LVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEA 160 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~--~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~ 160 (648)
+....+.+++.+++.... .| .|.++|+.+++.+... -.+....++|+||+.++++...+ ..+..+++..
T Consensus 187 ~~~~~~~~~~~~~~~~~~-d~----~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d----~~i~~~~~~~ 257 (340)
T d1tbga_ 187 VMSLSLAPDTRLFVSGAC-DA----SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD----ATCRLFDLRA 257 (340)
T ss_dssp EEEEEECTTSSEEEEEET-TT----EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTT
T ss_pred EeeeccccccceeEEeec-Cc----eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCC----CeEEEEeecc
Confidence 445677788887765432 33 7899999998866421 12234568999999444444322 3477788876
Q ss_pred CCCCcEEEEeecC-CCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccccee-eeEeecCCEEEEEec
Q 006375 161 DQSNDICLYHEKD-DIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVD-TAASHRGNHFFITRR 238 (648)
Q Consensus 161 ~~~~~~~~~~~~~-~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~~~ 238 (648)
. .....+.... ......+.++|||++|+..+. +..|+++|+.+++....+......+. ..|+|+|..|+-.+.
T Consensus 258 ~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~ 332 (340)
T d1tbga_ 258 D--QELMTYSHDNIICGITSVSFSKSGRLLLAGYD---DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp T--EEEEEECCTTCCSCEEEEEECSSSCEEEEEET---TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred c--ccccccccccccCceEEEEECCCCCEEEEEEC---CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence 5 2233332222 222446789999999876543 24588999988762333333333332 458999987654443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=96.89 E-value=0.014 Score=57.89 Aligned_cols=100 Identities=11% Similarity=-0.001 Sum_probs=57.4
Q ss_pred ecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcccc----------------
Q 006375 134 AGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKI---------------- 197 (648)
Q Consensus 134 spDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~---------------- 197 (648)
+|||+.+|+... ...+|.++++.+.+ ...+.+-+......++.++|||+.+++......
T Consensus 80 tpDGr~lfV~d~---~~~rVavIDl~t~k--~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~ 154 (441)
T d1qnia2 80 RYDGKYLFINDK---ANTRVARIRLDIMK--TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS 154 (441)
T ss_dssp EEEEEEEEEEET---TTTEEEEEETTTTE--EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred cCCCCEEEEEcC---CCCEEEEEECCCCc--EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence 689944455542 24569999999873 233333333334456789999996655432211
Q ss_pred ccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEec
Q 006375 198 TRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRR 238 (648)
Q Consensus 198 ~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~ 238 (648)
...+-.+|..+.+....+.-...-....++|||+++|+.+.
T Consensus 155 ~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 155 YTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCY 195 (441)
T ss_dssp EEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred cceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEec
Confidence 12345578777661122221111233568999999887764
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.059 Score=49.64 Aligned_cols=189 Identities=8% Similarity=0.027 Sum_probs=94.6
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
....++++|..++...+ + .+.+++..+++..... .......+.++++ .++....+. ..+..+++...
T Consensus 84 ~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~----~~v~~~~~~~~- 151 (287)
T d1pgua2 84 KVASANNDGFTAVLTND--D----DLLILQSFTGDIIKSV-RLNSPGSAVSLSQNYVAVGLEEG----NTIQVFKLSDL- 151 (287)
T ss_dssp EEEEECSSSEEEEEETT--S----EEEEEETTTCCEEEEE-ECSSCEEEEEECSSEEEEEETTT----SCEEEEETTEE-
T ss_pred eeeeeccCCceEEEeec--c----cceeeeccceeeeeec-cccceeeeeeccCcceeeecccc----ceeeeeecccc-
Confidence 34567788876664321 1 4677888777765421 1112235677888 666554322 23666666433
Q ss_pred CCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeE--eeecccce-eeeEeecCCE-------
Q 006375 163 SNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRV--LTPRVVGV-DTAASHRGNH------- 232 (648)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~--l~~~~~~~-~~~~s~dg~~------- 232 (648)
+...............+.|+|||++|+..+.+ ..|+++|+.++. ... .......+ ...|+|++..
T Consensus 152 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 226 (287)
T d1pgua2 152 -EVSFDLKTPLRAKPSYISISPSETYIAAGDVM---GKILLYDLQSRE-VKTSRWAFRTSKINAISWKPAEKGANEEEIE 226 (287)
T ss_dssp -EEEEECSSCCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTTE-EEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred -ceeeeeeeccCCceeEEEeccCcccccccccc---ccccceeecccc-cccccccccccccceeeecccccccccccCC
Confidence 11111111112234467899999998865433 458888988765 211 11111112 2335554432
Q ss_pred --EEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEE
Q 006375 233 --FFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYR 296 (648)
Q Consensus 233 --l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~ 296 (648)
+++... .+..|+..++..+........ .....+..+.+.++..++....++. +.+|+
T Consensus 227 ~~~l~sgs----~D~~i~iw~~~~~~~~~~~~~-~h~~~V~~v~~~~~~~l~s~g~D~~--v~iW~ 285 (287)
T d1pgua2 227 EDLVATGS----LDTNIFIYSVKRPMKIIKALN-AHKDGVNNLLWETPSTLVSSGADAC--IKRWN 285 (287)
T ss_dssp CCEEEEEE----TTSCEEEEESSCTTCCEEETT-SSTTCEEEEEEEETTEEEEEETTSC--EEEEE
T ss_pred CCeeEeec----CCCeEEEEECCCCCeEEEEeC-CCCCCeEEEEECCCCEEEEEECCCe--EEEEE
Confidence 122222 224677778765332221222 1122356666666555566666654 44444
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.63 E-value=0.052 Score=53.01 Aligned_cols=115 Identities=12% Similarity=0.095 Sum_probs=69.5
Q ss_pred ceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeec-----CCCeEEEEEeCCCCcEEEEEEccccccEEEE
Q 006375 129 ASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEK-----DDIYSLGLQASESKKFLFIASESKITRFVFY 203 (648)
Q Consensus 129 ~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 203 (648)
..++|+|||.| ++... ...|.++++.++ +....+... .......++|||||++|+..+.+.....|.+
T Consensus 188 ~~v~~s~dg~l-asgs~----Dg~i~iwd~~~~--~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~l 260 (393)
T d1sq9a_ 188 TSVDISERGLI-ATGFN----NGTVQISELSTL--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL 260 (393)
T ss_dssp CEEEECTTSEE-EEECT----TSEEEEEETTTT--EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEE
T ss_pred EEEEECCCCEE-EEEeC----CCcEEEEeeccc--ccccccccccccccccceEEEcccccccceeeeecCCCCcceeee
Confidence 45899999844 44432 345888888776 222223221 1223456789999999987665555567888
Q ss_pred EECCCCCceeEeee-------------ccccee-eeEeecCCEEEEEeccCCCCCcEEEEEeCCCC
Q 006375 204 LDVSKPEELRVLTP-------------RVVGVD-TAASHRGNHFFITRRSDELFNSELLACPVDNT 255 (648)
Q Consensus 204 ~dl~~~~~~~~l~~-------------~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~ 255 (648)
+|+++++....+.. ....+. ..|+|||+.|+-.+.+ ..|.+.|++++
T Consensus 261 wd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D-----~~v~vWd~~~g 321 (393)
T d1sq9a_ 261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-----GKLRFWDVKTK 321 (393)
T ss_dssp EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTT
T ss_pred cccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC-----CEEEEEECCCC
Confidence 99988762222211 111122 4589999876543332 47888888763
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.56 E-value=0.3 Score=45.38 Aligned_cols=198 Identities=9% Similarity=-0.003 Sum_probs=100.2
Q ss_pred ceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCC
Q 006375 129 ASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSK 208 (648)
Q Consensus 129 ~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~ 208 (648)
.+++++|||+||++... ..+|++++.++. ...+... +....++++++||+.++.. ... ..++.+++.+
T Consensus 31 e~iAv~pdG~l~vt~~~----~~~I~~i~p~g~----~~~~~~~-~~~~~gla~~~dG~l~v~~-~~~--~~~~~~~~~~ 98 (302)
T d2p4oa1 31 ENLASAPDGTIFVTNHE----VGEIVSITPDGN----QQIHATV-EGKVSGLAFTSNGDLVATG-WNA--DSIPVVSLVK 98 (302)
T ss_dssp EEEEECTTSCEEEEETT----TTEEEEECTTCC----EEEEEEC-SSEEEEEEECTTSCEEEEE-ECT--TSCEEEEEEC
T ss_pred CCEEECCCCCEEEEeCC----CCEEEEEeCCCC----EEEEEcC-CCCcceEEEcCCCCeEEEe-cCC--ceEEEEEecc
Confidence 35899999998776442 356888886543 2233332 2344578899999854433 222 2244444433
Q ss_pred CC-ceeEeeecccc---eeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEec--------CCCCcccceEEEe
Q 006375 209 PE-ELRVLTPRVVG---VDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIP--------HRESVKLQDIQLF 276 (648)
Q Consensus 209 ~~-~~~~l~~~~~~---~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 276 (648)
.. ....+...... ....++++| .+|+... .+.++++++..+.....+... ........++.++
T Consensus 99 ~~~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~ 173 (302)
T d2p4oa1 99 SDGTVETLLTLPDAIFLNGITPLSDT-QYLTADS----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 173 (302)
T ss_dssp TTSCEEEEEECTTCSCEEEEEESSSS-EEEEEET----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred cccceeeccccCCccccceeEEccCC-CEEeecc----ccccceeeeccCCcceeEecCCccceeeccCccccccccccc
Confidence 22 13444322211 123366666 4555433 235788888765321211111 1111223456777
Q ss_pred CCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCCeeeeeCCCCcccccEEEEEEeeCCCCCEEEEEECCCCc
Q 006375 277 IDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDPVYSIDPSESVFSSRILRFHYSSLRTPPSVYDYDMDMGI 356 (648)
Q Consensus 277 ~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~~~~v~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 356 (648)
++++++..... .+++.++.+..+. .. ........ ....++..+.+++ +++.... -.+++++++..+.
T Consensus 174 ~~~l~~~~~~~--~~i~~~~~~~~~~-~~----~~~~~~~~--~~pdgia~d~dG~-l~va~~~---~~~V~~i~p~G~~ 240 (302)
T d2p4oa1 174 GNFLYVSNTEK--MLLLRIPVDSTDK-PG----EPEIFVEQ--TNIDDFAFDVEGN-LYGATHI---YNSVVRIAPDRST 240 (302)
T ss_dssp TTEEEEEETTT--TEEEEEEBCTTSC-BC----CCEEEEES--CCCSSEEEBTTCC-EEEECBT---TCCEEEECTTCCE
T ss_pred CCceeeecCCC--CeEEecccccccc-cc----ccccccCC--CCCcceEECCCCC-EEEEEcC---CCcEEEECCCCCE
Confidence 88877766544 4677777764322 11 11111000 0122345566766 5544322 2569999876543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.44 E-value=0.32 Score=44.30 Aligned_cols=198 Identities=13% Similarity=0.087 Sum_probs=116.5
Q ss_pred CCEEEEEEecCCceEEEEEEEecCCCCCCCCccccCCCCCCCCCceEEEecccccCCCCcEEEeeEEeCCCCCEEEEEEe
Q 006375 21 GSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSPDNKLVAYAED 100 (648)
Q Consensus 21 g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~n~~~~~~~~~~~~~~~~SPDG~~la~~~~ 100 (648)
.++.||+-...+ .++|....+ +..+++++.+.. ...++++..-++.|.|+..
T Consensus 47 ~~~iywsd~~~~----~I~~~~l~g-----------------~~~~~v~~~~~~-------~p~~iAvD~~~~~lY~~d~ 98 (263)
T d1npea_ 47 DKVVYWTDISEP----SIGRASLHG-----------------GEPTTIIRQDLG-------SPEGIALDHLGRTIFWTDS 98 (263)
T ss_dssp TTEEEEEETTTT----EEEEEESSS-----------------CCCEEEECTTCC-------CEEEEEEETTTTEEEEEET
T ss_pred CCEEEEEECCCC----eEEEEEccc-----------------CCcEEEEEeccc-------cccEEEEeccCCeEEEecc
Confidence 577887644332 355555432 244666654321 2346777777888777653
Q ss_pred CCCCeEEEEEEEECCCCCeeecccc--CccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCCCCCcEEEEeecCCCeE
Q 006375 101 TKGDEIYTVYVIDIETGTPVGKPLV--GVTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEADQSNDICLYHEKDDIYS 177 (648)
Q Consensus 101 ~~G~e~~~l~v~dl~~g~~~~~~~~--~~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 177 (648)
.. ..|.+.++++......... .....++-.|.+ .+|++... .....|++.++++. ....+... +-..-
T Consensus 99 ~~----~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~--~~~~~I~r~~~dG~--~~~~i~~~-~~~~P 169 (263)
T d1npea_ 99 QL----DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN--RDNPKIETSHMDGT--NRRILAQD-NLGLP 169 (263)
T ss_dssp TT----TEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC--SSSCEEEEEETTSC--CCEEEECT-TCSCE
T ss_pred CC----CEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecC--CCCcEEEEecCCCC--Cceeeeee-ccccc
Confidence 33 3788999987654322111 123347777877 77766542 22346999998765 33444332 22333
Q ss_pred EEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCc
Q 006375 178 LGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSE 257 (648)
Q Consensus 178 ~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~ 257 (648)
.++++.+.++.|++.. ...+.|..+++++.. .+.+..... .-..++.++++||++... ..+|++++..++..
T Consensus 170 ~glaiD~~~~~lYw~d--~~~~~I~~~~~~g~~-~~~v~~~~~-~P~~lav~~~~lYwtd~~----~~~I~~~~~~~g~~ 241 (263)
T d1npea_ 170 NGLTFDAFSSQLCWVD--AGTHRAECLNPAQPG-RRKVLEGLQ-YPFAVTSYGKNLYYTDWK----TNSVIAMDLAISKE 241 (263)
T ss_dssp EEEEEETTTTEEEEEE--TTTTEEEEEETTEEE-EEEEEECCC-SEEEEEEETTEEEEEETT----TTEEEEEETTTTEE
T ss_pred ceEEEeecCcEEEEEe--CCCCEEEEEECCCCC-eEEEECCCC-CcEEEEEECCEEEEEECC----CCEEEEEECCCCcc
Confidence 4677888888887753 345789999998765 444443322 123466678888877653 25899999876433
Q ss_pred ceeEec
Q 006375 258 TTVLIP 263 (648)
Q Consensus 258 ~~~~~~ 263 (648)
.+.+.+
T Consensus 242 ~~~~~~ 247 (263)
T d1npea_ 242 MDTFHP 247 (263)
T ss_dssp EEEECC
T ss_pred ceEECC
Confidence 333443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.44 E-value=0.38 Score=45.10 Aligned_cols=199 Identities=13% Similarity=0.119 Sum_probs=105.8
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec--cccCc----cceeEEecCCeEEEEEeCC----------
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGV----TASVEWAGNEALVYITMDE---------- 146 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~--~~~~~----~~~~~WspDg~l~y~~~~~---------- 146 (648)
-.++.++|||+.|... +..+ .|.+++.+++..... ...+. ...++..+||.||++....
T Consensus 73 P~Gl~~~~dg~~l~va-d~~~----~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~ 147 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVA-DMRL----GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp EEEEEECSSSSEEEEE-ETTT----EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred ceeEEEeCCCCEEEEE-ECCC----eEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccce
Confidence 3478999999976554 4322 478889887654421 11121 2347888999888764321
Q ss_pred -CCCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCc----EEEEEEccccccEEEEEECCCCCce--eEeeecc
Q 006375 147 -ILRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKK----FLFIASESKITRFVFYLDVSKPEEL--RVLTPRV 219 (648)
Q Consensus 147 -~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~----~l~~~~~~~~~~~l~~~dl~~~~~~--~~l~~~~ 219 (648)
......||+++.+.. ...+... -..-.++.|++|+. +|++. .....+||.+|++....+ +.+....
T Consensus 148 ~~~~~G~v~~~~~dg~---~~~~~~~--~~~pNGi~~~~d~d~~~~~lyv~--d~~~~~i~~~d~~~~g~~~~~~~~~~~ 220 (314)
T d1pjxa_ 148 MQEKFGSIYCFTTDGQ---MIQVDTA--FQFPNGIAVRHMNDGRPYQLIVA--ETPTKKLWSYDIKGPAKIENKKVWGHI 220 (314)
T ss_dssp TSSSCEEEEEECTTSC---EEEEEEE--ESSEEEEEEEECTTSCEEEEEEE--ETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred eccCCceEEEEeecCc---eeEeeCC--cceeeeeEECCCCCcceeEEEEE--eecccceEEeeccCccccceeeEEEEc
Confidence 112236888776432 2222221 12223567777653 44442 334578999887643311 1111111
Q ss_pred cc-----ee-eeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeC--CEEEEEEecCCeeE
Q 006375 220 VG-----VD-TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFI--DHLAVYEREGGLQK 291 (648)
Q Consensus 220 ~~-----~~-~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~ 291 (648)
.+ .+ ..++.+|. ||+.... ..+|++++.++..... .+... ......+.+.+ +.+++....+ .+
T Consensus 221 ~~~~~~~pdGiavD~~Gn-lyVa~~~----~g~I~~~dp~~g~~~~-~i~~p-~~~~t~~afg~d~~~lyVt~~~~--g~ 291 (314)
T d1pjxa_ 221 PGTHEGGADGMDFDEDNN-LLVANWG----SSHIEVFGPDGGQPKM-RIRCP-FEKPSNLHFKPQTKTIFVTEHEN--NA 291 (314)
T ss_dssp CCCSSCEEEEEEEBTTCC-EEEEEET----TTEEEEECTTCBSCSE-EEECS-SSCEEEEEECTTSSEEEEEETTT--TE
T ss_pred cccccccceeeEEecCCc-EEEEEcC----CCEEEEEeCCCCEEEE-EEECC-CCCEEEEEEeCCCCEEEEEECCC--Cc
Confidence 11 11 23666775 6665543 2589999877522222 22221 11234455544 4677766544 47
Q ss_pred EEEEEcCCCCC
Q 006375 292 ITTYRLPAVGE 302 (648)
Q Consensus 292 l~v~~~~~~g~ 302 (648)
|+.++++..|.
T Consensus 292 i~~~~~~~~G~ 302 (314)
T d1pjxa_ 292 VWKFEWQRNGK 302 (314)
T ss_dssp EEEEECSSCBC
T ss_pred EEEEECCCCCh
Confidence 78888776554
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.059 Score=50.46 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=83.1
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSN 164 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~ 164 (648)
...+++||++|+.... +| .|+++|+.+++.+.........-.++++++.++++... ...|+.+++....
T Consensus 180 ~~~~~~~~~~l~s~~~-dg----~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~----d~~i~iwd~~~~~-- 248 (342)
T d2ovrb2 180 VYSLQFDGIHVVSGSL-DT----SIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNA----DSTVKIWDIKTGQ-- 248 (342)
T ss_dssp EEEEEECSSEEEEEET-TS----CEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEET----TSCEEEEETTTCC--
T ss_pred cccccCCCCEEEEEeC-CC----eEEEeecccceeeeEecccccceeEEecCCCEEEEEcC----CCEEEEEeccccc--
Confidence 3456778988875543 34 68999999988764322111111334455534444432 2347888887652
Q ss_pred cEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-ccc---c-e-eeeEeecCCEEEEEec
Q 006375 165 DICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVV---G-V-DTAASHRGNHFFITRR 238 (648)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~---~-~-~~~~s~dg~~l~~~~~ 238 (648)
....+.........-..++.++++++..+. +..|.++|+.+++..+.+.. ... + + ...++|++..|+.. .
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~---Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g-~ 324 (342)
T d2ovrb2 249 CLQTLQGPNKHQSAVTCLQFNKNFVITSSD---DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG-S 324 (342)
T ss_dssp EEEEECSTTSCSSCEEEEEECSSEEEEEET---TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE-C
T ss_pred ccccccccceeeeceeecccCCCeeEEEcC---CCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEE-e
Confidence 233332221111111233446666654432 35799999998872233321 111 1 2 23578887644433 4
Q ss_pred cCCCCCcEEEEEeCCC
Q 006375 239 SDELFNSELLACPVDN 254 (648)
Q Consensus 239 ~~~~~~~~l~~~~~~~ 254 (648)
.++....+|++.|++.
T Consensus 325 ~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 325 RNGTEETKLLVLDFDV 340 (342)
T ss_dssp SSSSSCCEEEEEECCC
T ss_pred CCCCCeeEEEEEeCCC
Confidence 4455567899888763
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.0037 Score=63.37 Aligned_cols=138 Identities=10% Similarity=0.052 Sum_probs=78.8
Q ss_pred EEeCCCCeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchh----------------HHHHHHCCCEEEEEcc
Q 006375 380 WASASDGTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSS----------------RLSLLDRGFIFAIAQI 443 (648)
Q Consensus 380 ~~~s~~g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~----------------~~~l~~~G~~v~~~~~ 443 (648)
.+...++..+..|++..++ + ....|+++++-||+|.+.-.....+ -..|.+. ..++.+|.
T Consensus 25 yl~~~~~~~lffw~~~s~~--~-~~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~~-anllfIDq 100 (452)
T d1ivya_ 25 YLKSSGSKHLHYWFVESQK--D-PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLI-ANVLYLES 100 (452)
T ss_dssp EEECSTTEEEEEEEECCSS--C-GGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGGS-SEEEEECC
T ss_pred eeecCCCceEEEEEEEcCC--C-CCCCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhcc-cCEEEEec
Confidence 3444566778777554332 2 2457999999999986543211100 1134433 67888897
Q ss_pred CCCCCCChhhhhcccccCCCCcHhHHHHHH-HHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh---CC-CceeEEEecCC
Q 006375 444 RGGGELGRQWYENGKFLKKKNTFTDFIACA-EYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM---RP-DLFKAAVAAVP 518 (648)
Q Consensus 444 rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~---~p-~~~~a~v~~~~ 518 (648)
+-|.|+...-.. .........-.|+..++ +|+.........++.|+|.|+||.-+-.++.. .+ -.++++++..|
T Consensus 101 PvGtGfS~~~~~-~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng 179 (452)
T d1ivya_ 101 PAGVGFSYSDDK-FYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNG 179 (452)
T ss_dssp STTSTTCEESSC-CCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESC
T ss_pred CCCcccccCCCC-CCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCC
Confidence 655555432110 00000011234554444 45544443445689999999999965444432 33 35899999999
Q ss_pred cccc
Q 006375 519 FVDV 522 (648)
Q Consensus 519 ~~d~ 522 (648)
++|.
T Consensus 180 ~~d~ 183 (452)
T d1ivya_ 180 LSSY 183 (452)
T ss_dssp CSBH
T ss_pred ccCc
Confidence 9874
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.54 Score=43.26 Aligned_cols=107 Identities=8% Similarity=0.022 Sum_probs=59.8
Q ss_pred EeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCccee
Q 006375 181 QASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSELLACPVDNTSETTV 260 (648)
Q Consensus 181 ~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (648)
.+++|+++++..+. ...|+++|+..++ ..............++++++.|+..+.. ..|...+.........
T Consensus 182 ~~~~~~~~l~s~~~---dg~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~ 252 (342)
T d2ovrb2 182 SLQFDGIHVVSGSL---DTSIRVWDVETGN-CIHTLTGHQSLTSGMELKDNILVSGNAD-----STVKIWDIKTGQCLQT 252 (342)
T ss_dssp EEEECSSEEEEEET---TSCEEEEETTTCC-EEEEECCCCSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCEEEE
T ss_pred cccCCCCEEEEEeC---CCeEEEeecccce-eeeEecccccceeEEecCCCEEEEEcCC-----CEEEEEeccccccccc
Confidence 45668888765443 2458889998876 3322222222334577788866554442 3577778765333322
Q ss_pred EecCC-CCcccceEEEeCCEEEEEEecCCeeEEEEEEcCC
Q 006375 261 LIPHR-ESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 261 ~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~ 299 (648)
+..+. ....+..+.+.++.++ ....++ .+.+|++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~-s~s~Dg--~i~iwd~~t 289 (342)
T d2ovrb2 253 LQGPNKHQSAVTCLQFNKNFVI-TSSDDG--TVKLWDLKT 289 (342)
T ss_dssp ECSTTSCSSCEEEEEECSSEEE-EEETTS--EEEEEETTT
T ss_pred ccccceeeeceeecccCCCeeE-EEcCCC--EEEEEECCC
Confidence 32222 2233455666777654 444454 588889874
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.67 Score=42.08 Aligned_cols=158 Identities=11% Similarity=-0.003 Sum_probs=99.2
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEECCCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLEAD 161 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~~~ 161 (648)
++++-+.++.|.|+-... ..|.+.++++.........+ ....++-.|.. .+|++.. +...+|++.++++.
T Consensus 81 glAvD~~~~~lY~~d~~~----~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~---~~~~~I~r~~~dGs 153 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVL----GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW---GTPAKIKKGGLNGV 153 (266)
T ss_dssp EEEEETTTTEEEEEETTT----TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC---SSSCEEEEEETTSC
T ss_pred eEEEeeccceEEEEecCC----CEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc---CCCcceeEeccCCC
Confidence 577888888887764332 37899999877644322221 22347777766 7777643 33457999998765
Q ss_pred CCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc--eeeeEeecCCEEEEEecc
Q 006375 162 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG--VDTAASHRGNHFFITRRS 239 (648)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~--~~~~~s~dg~~l~~~~~~ 239 (648)
....+..+. -.+..++++.+.++.|++.. .....|+.+++++.. .+.+...... .-..++.++++||++...
T Consensus 154 --~~~~l~~~~-~~~p~gl~iD~~~~~lYw~d--~~~~~I~~~~~dG~~-~~~~~~~~~~~~~p~~lav~~~~ly~td~~ 227 (266)
T d1ijqa1 154 --DIYSLVTEN-IQWPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTDII 227 (266)
T ss_dssp --CEEEEECSS-CSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEETTEEEEEETT
T ss_pred --ceecccccc-cceeeEEEeeccccEEEEec--CCcCEEEEEECCCCC-EEEEEeCCCcccccEEEEEECCEEEEEECC
Confidence 334444332 23445778888888888753 334689999998865 4444333222 223477778888887543
Q ss_pred CCCCCcEEEEEeCCCCCcce
Q 006375 240 DELFNSELLACPVDNTSETT 259 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~ 259 (648)
..+|++++..++...+
T Consensus 228 ----~~~I~~~~~~~g~~~~ 243 (266)
T d1ijqa1 228 ----NEAIFSANRLTGSDVN 243 (266)
T ss_dssp ----TTEEEEEETTTCCCCE
T ss_pred ----CCeEEEEECCCCcceE
Confidence 2589999876644333
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.76 E-value=0.041 Score=50.75 Aligned_cols=95 Identities=12% Similarity=0.141 Sum_probs=58.1
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc---CccceeEEecCC-e---------EEEEEeCCCC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV---GVTASVEWAGNE-A---------LVYITMDEIL 148 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~---~~~~~~~WspDg-~---------l~y~~~~~~~ 148 (648)
.+..+.|||||++|+.... +| .|+++|+.+++....... .....++|+|++ . ++.+..
T Consensus 164 ~v~~~~~s~~~~~l~~g~~-dg----~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs---- 234 (287)
T d1pgua2 164 KPSYISISPSETYIAAGDV-MG----KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS---- 234 (287)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE----
T ss_pred ceeEEEeccCccccccccc-cc----cccceeecccccccccccccccccceeeecccccccccccCCCCeeEeec----
Confidence 4678899999999886653 34 689999998876543221 223458898876 2 222322
Q ss_pred CCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCc
Q 006375 149 RPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKK 187 (648)
Q Consensus 149 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~ 187 (648)
....|+.+++..+. +...... ........+.|+||++
T Consensus 235 ~D~~i~iw~~~~~~-~~~~~~~-~h~~~V~~v~~~~~~~ 271 (287)
T d1pgua2 235 LDTNIFIYSVKRPM-KIIKALN-AHKDGVNNLLWETPST 271 (287)
T ss_dssp TTSCEEEEESSCTT-CCEEETT-SSTTCEEEEEEEETTE
T ss_pred CCCeEEEEECCCCC-eEEEEeC-CCCCCeEEEEECCCCE
Confidence 22458888887652 2222222 2233345778899985
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.56 E-value=0.81 Score=41.42 Aligned_cols=195 Identities=7% Similarity=0.044 Sum_probs=117.0
Q ss_pred EeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEEECC
Q 006375 83 VGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 83 ~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
+.++.+-+..++|-|+ +..+ ..|+..+++++........+ ...+++...-+ .||++- .....|.+.+++
T Consensus 38 ~~~ld~D~~~~~iyws-d~~~---~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d----~~~~~I~~~~~d 109 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWT-DISE---PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTD----SQLDRIEVAKMD 109 (263)
T ss_dssp EEEEEEETTTTEEEEE-ETTT---TEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEE----TTTTEEEEEETT
T ss_pred EEEEEEEeCCCEEEEE-ECCC---CeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEec----cCCCEEEEEecC
Confidence 3456777788888665 4333 26888999876554321112 12235554445 776653 234568888887
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccc-eeeeEeecCCEEEEEe
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITR 237 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~~ 237 (648)
+. ..+.+.... .....++...|...+|+++........|++.++++.. .+.+.. .... ....+++.++.||+..
T Consensus 110 g~--~~~~l~~~~-l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~~~~~P~glaiD~~~~~lYw~d 185 (263)
T d1npea_ 110 GT--QRRVLFDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (263)
T ss_dssp SC--SCEEEECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred Cc--eEEEEeccc-ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-ceeeeeecccccceEEEeecCcEEEEEe
Confidence 65 333444332 1223466788888888886554445679999998876 444432 2221 2345778888888874
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
.. ..+|.+++.++ ...+.++.... ...++.++++++++.-... .+|..++..
T Consensus 186 ~~----~~~I~~~~~~g-~~~~~v~~~~~--~P~~lav~~~~lYwtd~~~--~~I~~~~~~ 237 (263)
T d1npea_ 186 AG----THRAECLNPAQ-PGRRKVLEGLQ--YPFAVTSYGKNLYYTDWKT--NSVIAMDLA 237 (263)
T ss_dssp TT----TTEEEEEETTE-EEEEEEEECCC--SEEEEEEETTEEEEEETTT--TEEEEEETT
T ss_pred CC----CCEEEEEECCC-CCeEEEECCCC--CcEEEEEECCEEEEEECCC--CEEEEEECC
Confidence 32 25899999976 33333443322 2457888888887766543 457777765
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.90 E-value=0.037 Score=53.69 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=25.3
Q ss_pred CCCcEEEEecCCCCCC--C---CCCCch----hHHHHHHCCCEEEEEccC
Q 006375 404 GSDPLLLYGYGSYEIC--N---DPAFNS----SRLSLLDRGFIFAIAQIR 444 (648)
Q Consensus 404 ~~~P~vl~~hGg~~~~--~---~~~~~~----~~~~l~~~G~~v~~~~~r 444 (648)
.++| ||++||-+|.. . -..|.. ....|.++|+.|+++.+.
T Consensus 6 ~~yP-IVLvHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~ 54 (388)
T d1ku0a_ 6 NDAP-IVLLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVG 54 (388)
T ss_dssp CCCC-EEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCC
T ss_pred CCCC-EEEeCCcccCCccccCcccccCCchhhhHHHHHhCCCEEEEeccC
Confidence 4577 67789943321 1 122332 345777899999999875
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.32 E-value=1.8 Score=39.20 Aligned_cols=58 Identities=7% Similarity=0.040 Sum_probs=35.5
Q ss_pred eeEeecCCEEEEEeccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecC
Q 006375 224 TAASHRGNHFFITRRSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREG 287 (648)
Q Consensus 224 ~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (648)
..|+|+++.|+-.+.+ ..|.+.|+++..... .++......+..++++++.+++...++
T Consensus 257 l~~sp~~~~lasg~~D-----g~v~vWD~~~~~~l~-~~~~~~~~~~~~~s~~~~~l~~a~sdd 314 (342)
T d1yfqa_ 257 IEFSPRHKFLYTAGSD-----GIISCWNLQTRKKIK-NFAKFNEDSVVKIACSDNILCLATSDD 314 (342)
T ss_dssp EEECTTTCCEEEEETT-----SCEEEEETTTTEEEE-ECCCCSSSEEEEEEECSSEEEEEEECT
T ss_pred EEecCCccEEEEECCC-----CEEEEEECCCCcEEE-EecCCCCCEEEEEEeCCCEEEEEEcCC
Confidence 3589999876544432 468888987632221 333333444677888888877766544
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=1.8 Score=39.03 Aligned_cols=195 Identities=5% Similarity=0.021 Sum_probs=112.1
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCee----eccccC--ccceeEEecCC-eEEEEEeCCCCCCceEEEE
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPV----GKPLVG--VTASVEWAGNE-ALVYITMDEILRPDKAWLH 156 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~----~~~~~~--~~~~~~WspDg-~l~y~~~~~~~~~~~l~~~ 156 (648)
.++.+.+..++|.|+ |... ..|+..++++.... .....+ ...+++.-+-+ .||++-. ...+|.+.
T Consensus 33 ~~id~d~~~~~lYw~-D~~~---~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~----~~~~I~v~ 104 (266)
T d1ijqa1 33 VALDTEVASNRIYWS-DLSQ---RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS----VLGTVSVA 104 (266)
T ss_dssp EEEEEETTTTEEEEE-ETTT---TEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET----TTTEEEEE
T ss_pred EEEEEEeCCCEEEEE-ECCC---CEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEec----CCCEEEeE
Confidence 456788889988665 4332 25777777642211 111111 12346665566 7766532 23468888
Q ss_pred ECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-ccc-eeeeEeecCCEEE
Q 006375 157 KLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHFF 234 (648)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-~~~-~~~~~s~dg~~l~ 234 (648)
++++. ....+..+.. ..-.++...|...+|+++. ......|++.++++.. .+.+... ... ....+++.++.||
T Consensus 105 ~~~g~--~~~~~~~~~~-~~P~~l~vd~~~g~ly~~~-~~~~~~I~r~~~dGs~-~~~l~~~~~~~p~gl~iD~~~~~lY 179 (266)
T d1ijqa1 105 DTKGV--KRKTLFRENG-SKPRAIVVDPVHGFMYWTD-WGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLY 179 (266)
T ss_dssp ETTSS--SEEEEEECTT-CCEEEEEEETTTTEEEEEE-CSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEE
T ss_pred ecCCc--eEEEEEcCCC-CCcceEEEEcccCeEEEec-cCCCcceeEeccCCCc-eecccccccceeeEEEeeccccEEE
Confidence 88765 2333333322 2233567788777887753 3345689999998876 5555432 211 2345788889999
Q ss_pred EEeccCCCCCcEEEEEeCCCCCcceeEecCCC-CcccceEEEeCCEEEEEEecCCeeEEEEEEcC
Q 006375 235 ITRRSDELFNSELLACPVDNTSETTVLIPHRE-SVKLQDIQLFIDHLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~ 298 (648)
+.-.. ..+|.++++++... +.++.... .....++.++++++++..... ..|+.++..
T Consensus 180 w~d~~----~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~~~~ly~td~~~--~~I~~~~~~ 237 (266)
T d1ijqa1 180 WVDSK----LHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIIN--EAIFSANRL 237 (266)
T ss_dssp EEETT----TTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETTEEEEEETTT--TEEEEEETT
T ss_pred EecCC----cCEEEEEECCCCCE-EEEEeCCCcccccEEEEEECCEEEEEECCC--CeEEEEECC
Confidence 87433 35899999986333 32333222 223557888999988765443 466666655
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.90 E-value=2 Score=38.27 Aligned_cols=192 Identities=13% Similarity=0.113 Sum_probs=93.1
Q ss_pred EEeeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccC--ccceeEEecCCeEEEEEeCCCCCCceEEEEECC
Q 006375 82 SVGCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVG--VTASVEWAGNEALVYITMDEILRPDKAWLHKLE 159 (648)
Q Consensus 82 ~~~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~--~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~ 159 (648)
.-.++++++||+.. ..+... ..++..++..+.........+ ....+++++||.|+++.. ... +..+.-.
T Consensus 15 ~P~~vavd~dG~i~--v~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~----~~~-~i~~~~~ 85 (260)
T d1rwia_ 15 SPSGVAVDSAGNVY--VTSEGM--YGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF----NNR-VVTLAAG 85 (260)
T ss_dssp CEEEEEECTTCCEE--EEECSS--SCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEET----TTE-EEEECTT
T ss_pred CCCEEEEcCCCCEE--EEEcCC--CCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeee----eec-eeeeeee
Confidence 34577899999843 333211 235666665544433322222 234588999987765432 122 3332222
Q ss_pred CCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeee-cccc-eeeeEeecCCEEEEEe
Q 006375 160 ADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTP-RVVG-VDTAASHRGNHFFITR 237 (648)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~~ 237 (648)
+. ...+..........++++.++|+..+ . . .....++.++..+.. ...... .... ....++++|+ +|+..
T Consensus 86 ~~---~~~~~~~~~~~~p~~iavd~~g~i~v-~-d-~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~~~~g~-~~v~~ 157 (260)
T d1rwia_ 86 SN---NQTVLPFDGLNYPEGLAVDTQGAVYV-A-D-RGNNRVVKLAAGSKT-QTVLPFTGLNDPDGVAVDNSGN-VYVTD 157 (260)
T ss_dssp CS---CCEECCCCSCCSEEEEEECTTCCEEE-E-E-GGGTEEEEECTTCSS-CEECCCCSCCSCCEEEECTTCC-EEEEE
T ss_pred cc---ceeeeeeeeeeecccccccccceeEe-e-c-cccccccccccccce-eeeeeecccCCcceeeecCCCC-Eeeec
Confidence 22 12222222223344678889997543 2 2 344677888776654 222211 1111 2234677776 65554
Q ss_pred ccCCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcC
Q 006375 238 RSDELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~ 298 (648)
.. +.+|++++.++.. .+.+....-....++.++.+ .+++....+ .++..+..+
T Consensus 158 ~~----~~~i~~~d~~~~~--~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~--~~i~~~~~~ 211 (260)
T d1rwia_ 158 TD----NNRVVKLEAESNN--QVVLPFTDITAPWGIAVDEAGTVYVTEHNT--NQVVKLLAG 211 (260)
T ss_dssp GG----GTEEEEECTTTCC--EEECCCSSCCSEEEEEECTTCCEEEEETTT--TEEEEECTT
T ss_pred cc----cccccccccccce--eeeeeccccCCCccceeeeeeeeeeeecCC--CEEEEEeCC
Confidence 43 3579999876522 22332222223556677665 455444333 356655544
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.78 E-value=1.7 Score=37.04 Aligned_cols=203 Identities=10% Similarity=0.041 Sum_probs=104.6
Q ss_pred CCCEEEEEEeCCCCeEEEEEEEECCCCCeeeccccCccceeEEecC-C--eEEEEEeCC-CCCCceEEEEECCCCCCCcE
Q 006375 91 DNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGN-E--ALVYITMDE-ILRPDKAWLHKLEADQSNDI 166 (648)
Q Consensus 91 DG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~~~~~~~~WspD-g--~l~y~~~~~-~~~~~~l~~~~l~~~~~~~~ 166 (648)
|+..|.|.....| ..++++++ +++.+..+-+-+.. .-.|. + .+.|.+.-. ..+.+.+|..++..+.. +.
T Consensus 24 ~~d~ll~~~~seG--~vni~~l~--g~~~vkLtkePI~~--~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GE-E~ 96 (313)
T d2hu7a1 24 DGDKLLVVGFSEG--SVNAYLYD--GGETVKLNREPINS--VLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGE-EQ 96 (313)
T ss_dssp TTTEEEEEEEETT--EEEEEEES--SSSCEECCSSCCSE--ECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTC-EE
T ss_pred cCCcEEEEEeccc--eEEEEEEe--CCEEEEEecccccC--cCCCccCcceEEEEeehhcCcceeeEEEEccCCCCe-ee
Confidence 5565667665567 46676664 66665433222221 11232 2 677887754 34567799999875432 22
Q ss_pred EEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccceeeeEeecCCEEEEEeccCCCCCcE
Q 006375 167 CLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVGVDTAASHRGNHFFITRRSDELFNSE 246 (648)
Q Consensus 167 ~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 246 (648)
.+ +...+.-.+ +..-|++.++|+..+.+...||+++ +++ ++.|.. ...+.+.-+-.|+.|.=..--.+. ...
T Consensus 97 ~i-~spk~vRI~--S~~yddk~vvF~Gased~~~LYvie--gGk-lrkL~~-vPpFsFVtDI~~d~I~G~g~~~g~-~~s 168 (313)
T d2hu7a1 97 RL-EAVKPMRIL--SGVDTGEAVVFTGATEDRVALYALD--GGG-LRELAR-LPGFGFVSDIRGDLIAGLGFFGGG-RVS 168 (313)
T ss_dssp EC-TTSCSBEEE--EEEECSSCEEEEEECSSCEEEEEEE--TTE-EEEEEE-ESSCEEEEEEETTEEEEEEEEETT-EEE
T ss_pred Ee-cCCceEEEE--EeeecCceEEEecccCCceEEEEEe--CCc-eeeecc-CCCcceEEeccCCeEEEEeeecCC-cce
Confidence 22 112111222 3445888899988888788888886 555 666643 233333334456665533332222 245
Q ss_pred EEEEeCCCCCcceeEecCCCCcccceEEEeCCEEEEEEecCCeeEEEEEEcCCCCCcccccCCCceeecCCC
Q 006375 247 LLACPVDNTSETTVLIPHRESVKLQDIQLFIDHLAVYEREGGLQKITTYRLPAVGEPLKSLQGGKSVEFIDP 318 (648)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~v~~~~~~g~~~~~l~~~~~i~~~~~ 318 (648)
++..|+++ +..+ +++..++..-.....-++.++--+..-+.+...-+++. .+.. +++.||+-
T Consensus 169 fF~adl~S-G~lr-i~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~--s~~y------erve~P~k 230 (313)
T d2hu7a1 169 LFTSNLSS-GGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR--DGSV------EDLELPSK 230 (313)
T ss_dssp EEEEETTT-EEEE-EECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTT--TCCE------EECCCSSC
T ss_pred EEEEeccc-CCEE-EecCCCCcccceeEccCceeeeccCCCCceEEEEEecc--cCce------eeeecCcc
Confidence 88888865 3444 44444443222333334454322333333333333443 3322 45667653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.72 E-value=2.3 Score=38.33 Aligned_cols=192 Identities=8% Similarity=0.009 Sum_probs=94.8
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-c---ccCc---cceeEEecCC-eEEEEEeCCCCCCceEEE
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-P---LVGV---TASVEWAGNE-ALVYITMDEILRPDKAWL 155 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~---~~~~---~~~~~WspDg-~l~y~~~~~~~~~~~l~~ 155 (648)
.+++++|||+ .|..|... .+|.++|.++.-.... + ..+. ...+++.++. ..++... ....+|..
T Consensus 26 ~gvavd~dg~--i~VaD~~n---~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~i~~ 97 (279)
T d1q7fa_ 26 SGVAVNAQND--IIVADTNN---HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER---SPTHQIQI 97 (279)
T ss_dssp EEEEECTTCC--EEEEEGGG---TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC---GGGCEEEE
T ss_pred cEEEEcCCCC--EEEEECCC---CEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceecc---CCcccccc
Confidence 5789999998 36666433 5788999764322211 1 0111 1234555555 4444433 22345666
Q ss_pred EECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeeccc--c-eeeeEeecCCE
Q 006375 156 HKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVV--G-VDTAASHRGNH 232 (648)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~--~-~~~~~s~dg~~ 232 (648)
++..+. ....+.........+++..++|+.++.. .....+++++.++.. ...+..... . ....++++| .
T Consensus 98 ~~~~g~---~~~~~~~~~~~~p~~~avd~~G~i~v~~---~~~~~~~~~~~~g~~-~~~~g~~~~~~~~~~i~~d~~g-~ 169 (279)
T d1q7fa_ 98 YNQYGQ---FVRKFGATILQHPRGVTVDNKGRIIVVE---CKVMRVIIFDQNGNV-LHKFGCSKHLEFPNGVVVNDKQ-E 169 (279)
T ss_dssp ECTTSC---EEEEECTTTCSCEEEEEECTTSCEEEEE---TTTTEEEEECTTSCE-EEEEECTTTCSSEEEEEECSSS-E
T ss_pred cccccc---ceeecCCCcccccceeccccCCcEEEEe---eccceeeEeccCCce-eecccccccccccceeeeccce-e
Confidence 654332 2223322222233466778888755432 234677888766542 232211111 1 112355555 4
Q ss_pred EEEEeccCCCCCcEEEEEeCCCCCcceeEecCC-CCcccceEEEeCCE-EEEEEecCCeeEEEEEEcC
Q 006375 233 FFITRRSDELFNSELLACPVDNTSETTVLIPHR-ESVKLQDIQLFIDH-LAVYEREGGLQKITTYRLP 298 (648)
Q Consensus 233 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-l~~~~~~~~~~~l~v~~~~ 298 (648)
+|+.... +..|++++.++ . ....+... ......++..+.+. +++.. ..+..++.+++.+
T Consensus 170 i~v~d~~----~~~V~~~d~~G-~-~~~~~g~~g~~~~P~giavD~~G~i~Vad-~~~~~~v~~f~~~ 230 (279)
T d1q7fa_ 170 IFISDNR----AHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGEILIAD-NHNNFNLTIFTQD 230 (279)
T ss_dssp EEEEEGG----GTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCCEEEEE-CSSSCEEEEECTT
T ss_pred EEeeecc----ccceeeeecCC-c-eeeeecccccccCCcccccccCCeEEEEE-CCCCcEEEEECCC
Confidence 6666543 35788888765 2 22233221 22235667776653 44433 2233457777654
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.41 E-value=0.12 Score=51.14 Aligned_cols=132 Identities=11% Similarity=0.029 Sum_probs=73.4
Q ss_pred CeEEeEEEEEeeCccccCCCCcEEEEecCCCCCCCCCCCchh---------------HHHHHHCCCEEEEEccCCCCCCC
Q 006375 386 GTQIPICIVYRKNLVKLDGSDPLLLYGYGSYEICNDPAFNSS---------------RLSLLDRGFIFAIAQIRGGGELG 450 (648)
Q Consensus 386 g~~i~~~l~~~~~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~---------------~~~l~~~G~~v~~~~~rG~g~~g 450 (648)
+..+..|++ +... + ..+.|+||++-||||.+.-..+..+ -..|.+ =..++.+|.+-|.|+.
T Consensus 27 ~~~lfyw~~-~s~~-~-~~~~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~~-~anllfiD~PvGtGfS 102 (421)
T d1wpxa1 27 DKHFFFWTF-ESRN-D-PAKDPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNS-NATVIFLDQPVNVGFS 102 (421)
T ss_dssp CCEEEEEEE-CCSS-C-TTTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGGG-SSEEEEECCSTTSTTC
T ss_pred CceEEEEEE-EeCC-C-CCCCCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCccccc-ccCEEEEecCCCCCce
Confidence 456777654 3332 2 3567999999999987543221110 012332 3578888966555554
Q ss_pred hhhhhcccccCCCCcHhHHHHHHHHHHHc-CC-C-CCCeEEEEeeChhHHHHHHHH----hhC--CCceeEEEecCCccc
Q 006375 451 RQWYENGKFLKKKNTFTDFIACAEYLIKN-CY-C-TKEKLCIEGRSAGGLLIGAVL----NMR--PDLFKAAVAAVPFVD 521 (648)
Q Consensus 451 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~-~-d~~~i~i~G~S~GG~l~~~~~----~~~--p~~~~a~v~~~~~~d 521 (648)
..-.. ...+.....+|+.++++...+. .. . ....+.|+|.|+||.-+-.+| .+. +--++++++..|++|
T Consensus 103 y~~~~--~~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~d 180 (421)
T d1wpxa1 103 YSGSS--GVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTD 180 (421)
T ss_dssp BCSSC--CCCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCCC
T ss_pred ecCCc--cccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCccc
Confidence 32111 1111112334555555433333 21 1 235799999999999554433 222 224789999999988
Q ss_pred cc
Q 006375 522 VL 523 (648)
Q Consensus 522 ~~ 523 (648)
..
T Consensus 181 p~ 182 (421)
T d1wpxa1 181 PL 182 (421)
T ss_dssp HH
T ss_pred ch
Confidence 54
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=2.5 Score=37.24 Aligned_cols=30 Identities=13% Similarity=0.035 Sum_probs=22.5
Q ss_pred EeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeee
Q 006375 87 QVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVG 121 (648)
Q Consensus 87 ~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~ 121 (648)
.+++||++||-... +| .|+|||+.+++.+.
T Consensus 20 c~~~d~~~l~sgs~-Dg----~i~vWd~~~~~~~~ 49 (293)
T d1p22a2 20 CLQYDDQKIVSGLR-DN----TIKIWDKNTLECKR 49 (293)
T ss_dssp EEECCSSEEEEEES-SS----CEEEEESSSCCEEE
T ss_pred EEEEcCCEEEEEeC-CC----eEEEEECCCCcEEE
Confidence 36789999875543 34 79999999988764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.05 E-value=3.8 Score=36.35 Aligned_cols=176 Identities=11% Similarity=0.103 Sum_probs=89.9
Q ss_pred eeEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeecccc--CccceeEEecCCeEEEEEeCCCCCCceEEEEECCCC
Q 006375 84 GCFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLV--GVTASVEWAGNEALVYITMDEILRPDKAWLHKLEAD 161 (648)
Q Consensus 84 ~~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~~~~--~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~ 161 (648)
.++.++|||+. |..+..+ ..+.+.+..++.... ... .....+++.++|.|++... ...+++..+..+.
T Consensus 60 ~gvav~~~g~i--~v~d~~~---~~i~~~~~~~~~~~~-~~~~~~~p~~iavd~~g~i~v~d~----~~~~~~~~~~~~~ 129 (260)
T d1rwia_ 60 QGLAVDGAGTV--YVTDFNN---RVVTLAAGSNNQTVL-PFDGLNYPEGLAVDTQGAVYVADR----GNNRVVKLAAGSK 129 (260)
T ss_dssp CCEEECTTCCE--EEEETTT---EEEEECTTCSCCEEC-CCCSCCSEEEEEECTTCCEEEEEG----GGTEEEEECTTCS
T ss_pred eEEEEcCCCCE--EEeeeee---ceeeeeeeccceeee-eeeeeeecccccccccceeEeecc----ccccccccccccc
Confidence 46788999983 5556544 345555444443332 222 2234588889887766432 1234666665543
Q ss_pred CCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeec-ccc-eeeeEeecCCEEEEEecc
Q 006375 162 QSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPR-VVG-VDTAASHRGNHFFITRRS 239 (648)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~-~~~-~~~~~s~dg~~l~~~~~~ 239 (648)
....+.........++..+++|+. ++.. .....|+.++.++.. ...+... ... ....++++|. ||+....
T Consensus 130 ---~~~~~~~~~~~~p~~i~~~~~g~~-~v~~--~~~~~i~~~d~~~~~-~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~ 201 (260)
T d1rwia_ 130 ---TQTVLPFTGLNDPDGVAVDNSGNV-YVTD--TDNNRVVKLEAESNN-QVVLPFTDITAPWGIAVDEAGT-VYVTEHN 201 (260)
T ss_dssp ---SCEECCCCSCCSCCEEEECTTCCE-EEEE--GGGTEEEEECTTTCC-EEECCCSSCCSEEEEEECTTCC-EEEEETT
T ss_pred ---eeeeeeecccCCcceeeecCCCCE-eeec--cccccccccccccce-eeeeeccccCCCccceeeeeee-eeeeecC
Confidence 122222111112235677889874 4332 344689999987764 3332211 111 1234667775 6555432
Q ss_pred CCCCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC-EEEEE
Q 006375 240 DELFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID-HLAVY 283 (648)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 283 (648)
+.+|++++.++ .... ++....-....++.++.+ .+++.
T Consensus 202 ----~~~i~~~~~~~-~~~~-~~~~~~~~~P~~i~~d~~g~l~va 240 (260)
T d1rwia_ 202 ----TNQVVKLLAGS-TTST-VLPFTGLNTPLAVAVDSDRTVYVA 240 (260)
T ss_dssp ----TTEEEEECTTC-SCCE-ECCCCSCCCEEEEEECTTCCEEEE
T ss_pred ----CCEEEEEeCCC-CeEE-EEccCCCCCeEEEEEeCCCCEEEE
Confidence 35788887754 2222 333322223456666654 34443
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=90.81 E-value=0.32 Score=48.73 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=25.2
Q ss_pred CCCeEEEeecCCCCccCCchHHHHHHHHH
Q 006375 566 NYPHILVTAGLNDPRVMYSEPAKFVAKLR 594 (648)
Q Consensus 566 ~~P~~li~~g~~D~~v~~~~~~~~~~~l~ 594 (648)
+++ |||.+|+.|..|+....+.+.++|.
T Consensus 372 gir-VLIy~Gd~D~icn~~Gte~~i~~L~ 399 (483)
T d1ac5a_ 372 GIE-IVLFNGDKDLICNNKGVLDTIDNLK 399 (483)
T ss_dssp TCE-EEEEEETTCSTTCHHHHHHHHHHCE
T ss_pred CCE-EEEEECChhhcCCCHHHHHHHHhCC
Confidence 355 9999999999999999999999984
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=90.52 E-value=1.3 Score=42.65 Aligned_cols=41 Identities=5% Similarity=-0.037 Sum_probs=28.7
Q ss_pred EEEEEEEECCCCCeeec-cccCccceeEEecCC-eEEEEEeCC
Q 006375 106 IYTVYVIDIETGTPVGK-PLVGVTASVEWAGNE-ALVYITMDE 146 (648)
Q Consensus 106 ~~~l~v~dl~~g~~~~~-~~~~~~~~~~WspDg-~l~y~~~~~ 146 (648)
...+.++|.++.+.... ...+....+.+++|| ++|+++.+.
T Consensus 172 ~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNS 214 (459)
T d1fwxa2 172 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNS 214 (459)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred ceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccc
Confidence 45677899999886643 334434469999999 777777653
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.88 E-value=7.6 Score=36.03 Aligned_cols=117 Identities=11% Similarity=0.066 Sum_probs=69.6
Q ss_pred eEEeCCCCCEEEEEEeC-CCCeEEEEEEEECCCCCeee-cccc----CccceeEEecCCeEEEEEeCCC-----------
Q 006375 85 CFQVSPDNKLVAYAEDT-KGDEIYTVYVIDIETGTPVG-KPLV----GVTASVEWAGNEALVYITMDEI----------- 147 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~-~G~e~~~l~v~dl~~g~~~~-~~~~----~~~~~~~WspDg~l~y~~~~~~----------- 147 (648)
.+...+||+...|..+- .+.+...|+-++.++.+.+- .++. .....++...||.+|++.....
T Consensus 103 ~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~ 182 (340)
T d1v04a_ 103 STFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH 182 (340)
T ss_dssp EEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHH
T ss_pred eEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHh
Confidence 33447899988888775 34556667777666554331 1221 1234688888999888753211
Q ss_pred --CCCceEEEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCC
Q 006375 148 --LRPDKAWLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKP 209 (648)
Q Consensus 148 --~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~ 209 (648)
.....|+.++. + +...+.+. -.+.-++++|||+++|++.... ...|++++++..
T Consensus 183 ~~~~~g~v~~~~~--~--~~~~~~~~--l~~pNGI~~s~d~~~lyVa~t~--~~~i~~y~~~~~ 238 (340)
T d1v04a_ 183 LGLAWSFVTYYSP--N--DVRVVAEG--FDFANGINISPDGKYVYIAELL--AHKIHVYEKHAN 238 (340)
T ss_dssp TTCCCEEEEEECS--S--CEEEEEEE--ESSEEEEEECTTSSEEEEEEGG--GTEEEEEEECTT
T ss_pred hcCCceeEEEEcC--C--ceEEEcCC--CCccceeEECCCCCEEEEEeCC--CCeEEEEEeCCC
Confidence 11234555543 2 22333332 2456689999999999886543 456777777654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.20 E-value=7.6 Score=35.08 Aligned_cols=196 Identities=14% Similarity=0.219 Sum_probs=115.0
Q ss_pred eEEeCCCCCEEEEEEeCCCCeEEEEEEEECCCCCeeec-ccc-CccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCC
Q 006375 85 CFQVSPDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK-PLV-GVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQ 162 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~~G~e~~~l~v~dl~~g~~~~~-~~~-~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~ 162 (648)
+.-..|..+-||.-. | .+|.|+|+++.+.+.. ..+ .+.. ..|-.+..|.+++. ..||-+++.++
T Consensus 67 sAIMhP~~~IiALra---g---~~LQiFnletK~klks~~~~e~Vvf-WkWis~~~L~lVT~------taVYHW~~~g~- 132 (327)
T d1utca2 67 SAIMNPASKVIALKA---G---KTLQIFNIEMKSKMKAHTMTDDVTF-WKWISLNTVALVTD------NAVYHWSMEGE- 132 (327)
T ss_dssp EEEECSSSSEEEEEE---T---TEEEEEETTTTEEEEEEECSSCCCE-EEESSSSEEEEECS------SEEEEEESSSS-
T ss_pred hhhcCCCCcEEEEec---C---CeEEEEehhHhhhhceEEcCCCcEE-EEecCCCEEEEEcC------CceEEEcccCC-
Confidence 455679999998775 4 3799999999887643 333 3333 77988888877764 34999999654
Q ss_pred CCcEEEEeecC---CCeEEEEEeCCCCcEEEEEEcccc----ccEEEEEECCCCCceeEeeecccceeeeEeecC----C
Q 006375 163 SNDICLYHEKD---DIYSLGLQASESKKFLFIASESKI----TRFVFYLDVSKPEELRVLTPRVVGVDTAASHRG----N 231 (648)
Q Consensus 163 ~~~~~~~~~~~---~~~~~~~~~s~Dg~~l~~~~~~~~----~~~l~~~dl~~~~~~~~l~~~~~~~~~~~s~dg----~ 231 (648)
++...+|+... ..-.++...++|.+|+++..-... ...+-++..+.+. -+.+.... +....+--+| .
T Consensus 133 s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGha-a~F~~~~~~g~~~~~ 210 (327)
T d1utca2 133 SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA-ASFAQFKMEGNAEES 210 (327)
T ss_dssp CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSE-EEEEEECCTTCSSCE
T ss_pred CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Ccccccee-eeeEEEEcCCCCCCc
Confidence 46778887643 123556788999999988643221 2355566665553 34443221 1112222222 2
Q ss_pred EEEEEeccCCCCCcEEEEEeCCCCCc------ce-e--EecC-CCCcccceEEEeCC-EEEEEEecCCeeEEEEEEcCC
Q 006375 232 HFFITRRSDELFNSELLACPVDNTSE------TT-V--LIPH-RESVKLQDIQLFID-HLAVYEREGGLQKITTYRLPA 299 (648)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~~~~~------~~-~--~~~~-~~~~~~~~~~~~~~-~l~~~~~~~~~~~l~v~~~~~ 299 (648)
.|+-...+ +....+|..+++..+.. .+ . .+|+ ..+.....+..+.+ .+++...+.| .+++|++.+
T Consensus 211 ~lf~fa~r-~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G--~i~lyDleT 286 (327)
T d1utca2 211 TLFCFAVR-GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG--YIHLYDLET 286 (327)
T ss_dssp EEEEEEEE-ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTS--EEEEEETTT
T ss_pred eEEEEEEC-CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCc--EEEEEEccc
Confidence 34433343 34557898888865211 11 1 2222 22333556677664 4555555555 578889885
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.96 E-value=12 Score=33.76 Aligned_cols=242 Identities=10% Similarity=0.120 Sum_probs=118.9
Q ss_pred CCCEEEEEEeCCCCeEEEEEEEECCCCCe-eeccccCccceeEEecCCeEEEEEeCCCCCCceEEEEECCCCCCCcEEEE
Q 006375 91 DNKLVAYAEDTKGDEIYTVYVIDIETGTP-VGKPLVGVTASVEWAGNEALVYITMDEILRPDKAWLHKLEADQSNDICLY 169 (648)
Q Consensus 91 DG~~la~~~~~~G~e~~~l~v~dl~~g~~-~~~~~~~~~~~~~WspDg~l~y~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 169 (648)
.-|+|+.-...++ ..++.|+|+..+.. ....+. ..+ .-=.|...++-.+. ...|-.+++++.+ ...-+
T Consensus 31 SDkyicVRe~~~~--~~~VvIidl~n~~~~~Rrpi~-Ads-AIMhP~~~IiALra-----g~~LQiFnletK~--klks~ 99 (327)
T d1utca2 31 SDKFICIREKVGE--QAQVVIIDMNDPSNPIRRPIS-ADS-AIMNPASKVIALKA-----GKTLQIFNIEMKS--KMKAH 99 (327)
T ss_dssp SSSEEEEEEEETT--EEEEEEEETTSTTSCEEEECC-CSE-EEECSSSSEEEEEE-----TTEEEEEETTTTE--EEEEE
T ss_pred cCCEEEEEeccCC--CceEEEEECCCCCcceecccc-hhh-hhcCCCCcEEEEec-----CCeEEEEehhHhh--hhceE
Confidence 3467776654333 78999999987653 222222 121 33347775555554 2347788998862 22222
Q ss_pred eecCCCeEEEEEeCCCCcEEEEEEccccccEEEEEECCCCCceeEeeecccc------eeeeEeecCCEEEEEec--cCC
Q 006375 170 HEKDDIYSLGLQASESKKFLFIASESKITRFVFYLDVSKPEELRVLTPRVVG------VDTAASHRGNHFFITRR--SDE 241 (648)
Q Consensus 170 ~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~dl~~~~~~~~l~~~~~~------~~~~~s~dg~~l~~~~~--~~~ 241 (648)
.-..+..+ -.|-.+....++ +.+.+|.+++++...++++..+... ..|..+++++|+++..= .++
T Consensus 100 ~~~e~Vvf--WkWis~~~L~lV-----T~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~ 172 (327)
T d1utca2 100 TMTDDVTF--WKWISLNTVALV-----TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN 172 (327)
T ss_dssp ECSSCCCE--EEESSSSEEEEE-----CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETT
T ss_pred EcCCCcEE--EEecCCCEEEEE-----cCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCC
Confidence 22222222 145555443333 2467999999765446666654332 34779999999887532 222
Q ss_pred CCCcEEEEEeCCCCCcceeEecCCCCcccceEEEeCC----EEEEE-EecCCeeEEEEEEcCCCCCcccccCCC-ceeec
Q 006375 242 LFNSELLACPVDNTSETTVLIPHRESVKLQDIQLFID----HLAVY-EREGGLQKITTYRLPAVGEPLKSLQGG-KSVEF 315 (648)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~-~~~~~~~~l~v~~~~~~g~~~~~l~~~-~~i~~ 315 (648)
.-.+++-.+..+. ...+ .+... ...-..+...++ .++.+ .+.....+|.+++++.....-...+.. .++.|
T Consensus 173 ~i~G~mQLYS~er-~~sQ-~ieGh-aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~f 249 (327)
T d1utca2 173 RVVGAMQLYSVDR-KVSQ-PIEGH-AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF 249 (327)
T ss_dssp EEEEEEEEEETTT-TEEE-EECCS-EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCC
T ss_pred ceeEEEEEEEecc-CcCc-cccce-eeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEEC
Confidence 2233444444443 2122 22211 111111222221 23333 333345799999997532111111111 12334
Q ss_pred CCCe-eeee-CCCCcccccEEEEEEeeCCCCCEEEEEECCCCcE
Q 006375 316 IDPV-YSID-PSESVFSSRILRFHYSSLRTPPSVYDYDMDMGIS 357 (648)
Q Consensus 316 ~~~~-~~v~-~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 357 (648)
|... .+.+ .+..+..-+ ++|..+.. +-+|.||+.|+..
T Consensus 250 ppea~~DFPvamqvs~kyg-iiyviTK~---G~i~lyDleTgt~ 289 (327)
T d1utca2 250 PPEAQNDFPVAMQISEKHD-VVFLITKY---GYIHLYDLETGTC 289 (327)
T ss_dssp CTTCTTCCEEEEEEETTTT-EEEEEETT---SEEEEEETTTCCE
T ss_pred CccccCCcEEEEEeeccCC-EEEEEecC---cEEEEEEcccccE
Confidence 4311 0111 011122222 45555544 7799999999984
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=85.89 E-value=0.42 Score=43.40 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=27.0
Q ss_pred HhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHh
Q 006375 466 FTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN 504 (648)
Q Consensus 466 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 504 (648)
.+++...++.++++.. ..+|.+.|||+||.+|..++.
T Consensus 116 ~~~i~~~v~~~~~~~~--~~~i~vtGHSLGGAlA~L~a~ 152 (265)
T d1lgya_ 116 VNDYFPVVQEQLTAHP--TYKVIVTGHSLGGAQALLAGM 152 (265)
T ss_dssp HHHHHHHHHHHHHHCT--TCEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCC--CceEEEEecccchHHHHHHHH
Confidence 3566667776665432 369999999999998876665
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=85.68 E-value=0.83 Score=41.25 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=27.8
Q ss_pred HhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh
Q 006375 466 FTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 466 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 505 (648)
.+++...++.+..+. ...+|.+.|||+||.+|..++..
T Consensus 108 ~~~i~~~i~~~~~~~--~~~~i~vTGHSLGGAlA~L~a~~ 145 (261)
T d1uwca_ 108 QDQVESLVKQQASQY--PDYALTVTGHSLGASMAALTAAQ 145 (261)
T ss_dssp HHHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CCcceEEeccchhHHHHHHHHHH
Confidence 356677777776653 23599999999999988765543
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=85.12 E-value=0.41 Score=43.66 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=27.5
Q ss_pred HhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh
Q 006375 466 FTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 466 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 505 (648)
..++...++.+..+.. ..+|.+.|||+||.+|..++..
T Consensus 120 ~~~i~~~i~~~~~~~~--~~~i~iTGHSLGGAlA~L~a~~ 157 (271)
T d1tiaa_ 120 RDDIIKELKEVVAQNP--NYELVVVGHSLGAAVATLAATD 157 (271)
T ss_pred HHHHHHHHHHHHHhCC--CceEEEeccchHHHHHHHHHHH
Confidence 3566677776665432 3689999999999988766653
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=84.72 E-value=0.52 Score=42.90 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=27.6
Q ss_pred HhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHhh
Q 006375 466 FTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLNM 505 (648)
Q Consensus 466 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 505 (648)
.+++...++.++++.. ..+|.++|||+||.+|..++..
T Consensus 121 ~~~v~~~v~~~~~~~~--~~~i~vtGHSLGGalA~l~a~~ 158 (269)
T d1tiba_ 121 ADTLRQKVEDAVREHP--DYRVVFTGHSLGGALATVAGAD 158 (269)
T ss_dssp HHHHHHHHHHHHHHCT--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CcceeeeccchHHHHHHHHHHH
Confidence 3566666776665532 2599999999999988777653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=84.44 E-value=4.4 Score=38.05 Aligned_cols=125 Identities=11% Similarity=-0.002 Sum_probs=74.9
Q ss_pred eEEeCCCCCEEEEEEeC------CCCeEEEEEEEECCCCCeeecc---ccC--ccceeEEecCCeEEEEEeCCCCCCceE
Q 006375 85 CFQVSPDNKLVAYAEDT------KGDEIYTVYVIDIETGTPVGKP---LVG--VTASVEWAGNEALVYITMDEILRPDKA 153 (648)
Q Consensus 85 ~~~~SPDG~~la~~~~~------~G~e~~~l~v~dl~~g~~~~~~---~~~--~~~~~~WspDg~l~y~~~~~~~~~~~l 153 (648)
...+..|||.++|.--. ..+....+.++|+++++..... .+. .....++.+||.|+...... ...+
T Consensus 24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~---~~~~ 100 (387)
T d1k3ia3 24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND---AKKT 100 (387)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS---TTCE
T ss_pred EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC---Ccce
Confidence 34567899988887421 1223456889999998765321 111 23457899999776655322 2457
Q ss_pred EEEECCCCCCCcEEEEeecCCCeEEEEEeCCCCcEEEEEEcc---ccccEEEEEECCCCCceeEe
Q 006375 154 WLHKLEADQSNDICLYHEKDDIYSLGLQASESKKFLFIASES---KITRFVFYLDVSKPEELRVL 215 (648)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~---~~~~~l~~~dl~~~~~~~~l 215 (648)
++++..+. .....-.-..+++.......+||+.+++.... ...++++++|..+.+ +..+
T Consensus 101 ~~yd~~~~--~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~-W~~~ 162 (387)
T d1k3ia3 101 SLYDSSSD--SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT-WTSL 162 (387)
T ss_dssp EEEEGGGT--EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE-EEEE
T ss_pred eEecCccC--cccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc-eeec
Confidence 77777665 22222111223444456778899877764322 223678999998876 6554
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=83.80 E-value=1.2 Score=40.32 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHHHcCCCCCCeEEEEeeChhHHHHHHHHh
Q 006375 466 FTDFIACAEYLIKNCYCTKEKLCIEGRSAGGLLIGAVLN 504 (648)
Q Consensus 466 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 504 (648)
..++...++.+.++. ...+|.+.|||+||.+|..++.
T Consensus 115 ~~~i~~~i~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~ 151 (265)
T d3tgla_ 115 QNELVATVLDQFKQY--PSYKVAVTGHSLGGATVLLCAL 151 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCceEEEecccchHHHHHHHHH
Confidence 355666666555543 2369999999999998876654
|