Citrus Sinensis ID: 006377

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65

MALVSASTERINLCGPTDPSSSRSTSEATSSANVSCAADPPDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEGWIVVDSEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHcccccccccEEEEEEEEEEccccccccEEEEEccEEEEEccccccEEEEEEEcccEEEEEEcccccccccEEEEEEccccEEEcccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHcccccHHHHHHHHHHcccccEEEcccccccccccEEEEEEEEEEccccccccEEEEEEEEEEEEcccEEEEEEEEEEccccccccEEEEEEEEEEEccccccccEEEEEEEEEEEEEcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

ccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccEEEEccEEEEEcHEccEEEEEEEEHHHEEEEEHHHHHEEcccEEEEEEccccEEEHcHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHEEEccEccccHHHHHHHHcccccHHHHHHHHHHcccccEEEcccccccccccEEEEEEEEEcccccccccEEEEEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEEEEEcccccccEEEEEEEEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccEEEcccccccccccccccccHHHHcccccccccccccccccEEccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

malvsasterinlcgptdpsssrstseatssanvscaadppdrnvqfstspipngdvevqsSVTLRSEEYRqlfrlpseevlVQDFNCAFQESILLQGHMYLFVHFICFYsnifgfetkkiipfyevTAVRraktagifpNAIEIFAAGKKYFFASFLSRDEAFKLITDgwlqhgsgslasaeqqdsssetsspqngpvviekvnccsadpiaksdsiireedlssdsklpanvemtpvemqddnveqdfepvldtdslhpiktsswniensdapkipecyTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHrkcgdkefkctswhrhyefgysrdlsfqhpikvyfgakfgscketqkfrvyrnshlvietsqevhdvpygdyfrvEGLWdvmrddggskegcILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKqknlekpegwivvdseggpaystvqnddvhservvntgetserlcnadhrirtlpitdsldasqsvgnllqgnlvDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLnrpqhvhmasppdymgagvgvglgqrsaesipWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE

MALVSAsterinlcgptdpsssrstsEATSSANVSCAADPPDRNVqfstspipngdvevQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSssetsspqngpVVIEKVNCCSADPiaksdsiireedlssdsklpaNVEMTPVEMQDDNVEQDFEPVLDTDSLHPiktsswniensdapkiPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVietsqevhdvpyGDYFRVEGLWDVMRDDGGSKEGCILRVYVNvafskktvwkgkivqSTLEECRDVYAMWIGMAHDVLKQKNLEKPEGWIVVDSEGGpaystvqnddvhservvntgetserlcnadHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLkdieqlhkre

MALVSASTERINLCGPTDPsssrstseatssaNVSCAADPPDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEGWIVVDSEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE

*********************************************************************YRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQH*************************VIEKVNCCSA*********************************************************WNI*****PKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEGWIVVDSE***************************LCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLK*********

********************************************************************EYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHG************************************************LSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMA**************************************************************************LQGNLVDSAAIASLL**************SGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMA***********************WLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLK**EQL****

*********RINLC***********************ADPPDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGS********************GPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEGWIVVDSEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKRE

*******************************************************DVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHG****************************************************************************************************KIPECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKN***********************************************IRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMG********QRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH***

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SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		648	2.2.26 [Sep-21-2011]
Q5RC33		662	GRAM domain-containing pr	yes	no	0.532	0.521	0.277	4e-23
Q3KR56		723	GRAM domain-containing pr	yes	no	0.163	0.146	0.495	4e-23
Q8IYS0		662	GRAM domain-containing pr	yes	no	0.530	0.519	0.272	4e-23
Q8VEF1		722	GRAM domain-containing pr	yes	no	0.163	0.146	0.495	4e-23
Q96CP6		724	GRAM domain-containing pr	no	no	0.163	0.146	0.495	4e-23
Q06681		1438	GRAM domain-containing pr	yes	no	0.552	0.248	0.265	1e-22
O42976		764	Uncharacterized membrane	yes	no	0.197	0.167	0.384	2e-21
Q3KR37		738	GRAM domain-containing pr	no	no	0.530	0.466	0.250	1e-20
Q80TI0		738	GRAM domain-containing pr	no	no	0.163	0.143	0.420	2e-20
Q6PEM6		445	GRAM domain-containing pr	no	no	0.165	0.240	0.412	8e-19

>sp\|Q5RC33\|GRM1C_PONAB GRAM domain-containing protein 1C OS=Pongo abelii GN=GRAMD1C PE=2 SV=1	Back alignment and function desciption

 Score =  110 bits (275), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 176/403 (43%), Gaps = 58/403 (14%)

Query: 66  RSEEYRQLF-RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPF 124
           R+EEYR+ F  LP  E L+ D+ CA Q  ILLQG +YL  +++CFYSNIF +ET   I  
Sbjct: 67  RNEEYRRQFTHLPDTERLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWETTISIAL 126

Query: 125 YEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQ-HGSGSLASAE 183
             +T + + KTA + PNAI+I    +K+FF SF +RD ++  I   W       SL   E
Sbjct: 127 KNITFMTKEKTARLIPNAIQIVTESEKFFFTSFGARDRSYLSIFRLWQNVLLDKSLTRQE 186

Query: 184 -----QQDSSSE----TSSPQNGPVVIEKVNCCSADPIAKSDSIIREEDLSSDSKLPAN- 233
                QQ+  +E        +N  + IE V   S    +  DS  R+E LS      +  
Sbjct: 187 FWQLLQQNYGTELGLNAEEMENLSLSIEDVRPRSPGRSSLDDSGERDEKLSKSISFTSES 246

Query: 234 -VEMTPVEMQDDN----------------VEQDFEPVLD-------TDSLHPIKTSSWNI 269
              ++  E  D N                 ++   P L+       + SL   K    ++
Sbjct: 247 ISRVSETESFDGNSSKGGLGKEESQNEKQTKKSLLPTLEKKLTRVPSKSLDLNKNEYLSL 306

Query: 270 ENS------DAPKIPE--CYTKV-AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKE 320
           E S      D   +PE   + ++     F +  +  + L F+  +  F++ F       +
Sbjct: 307 EKSSTSDSVDEENVPEKDLHGRLFINRIFHISADRMFELLFT--SSRFMQKFASSRNIID 364

Query: 321 FKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCK-ETQKFRVYRNSH----LVIETSQ 375
              T W    E G  +  +  + I V      G C   T+K  +Y+ S      ++++  
Sbjct: 365 VVSTPW--TAELGGDQLRTMTYTI-VLNSPLTGKCTAATEKQTLYKESREARFYMVDSEV 421

Query: 376 EVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK 418
             HDVPY DYF     + ++R    SK+ C LRV  ++ + K+
Sbjct: 422 LTHDVPYHDYFYTVDRYCIIR---SSKQKCRLRVSTDLKYRKQ 461

Pongo abelii (taxid: 9601)

>sp\|Q3KR56\|GRM1A_RAT GRAM domain-containing protein 1A OS=Rattus norvegicus GN=Gramd1a PE=2 SV=2	Back alignment and function description

>sp\|Q8IYS0\|GRM1C_HUMAN GRAM domain-containing protein 1C OS=Homo sapiens GN=GRAMD1C PE=2 SV=2	Back alignment and function description

>sp\|Q8VEF1\|GRM1A_MOUSE GRAM domain-containing protein 1A OS=Mus musculus GN=Gramd1a PE=2 SV=2	Back alignment and function description

>sp\|Q96CP6\|GRM1A_HUMAN GRAM domain-containing protein 1A OS=Homo sapiens GN=GRAMD1A PE=1 SV=2	Back alignment and function description

>sp\|Q06681\|YSP2_YEAST GRAM domain-containing protein YSP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSP2 PE=1 SV=1	Back alignment and function description

>sp\|O42976\|YGZ7_SCHPO Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1 SV=1	Back alignment and function description

>sp\|Q3KR37\|GRM1B_HUMAN GRAM domain-containing protein 1B OS=Homo sapiens GN=GRAMD1B PE=1 SV=1	Back alignment and function description

>sp\|Q80TI0\|GRM1B_MOUSE GRAM domain-containing protein 1B OS=Mus musculus GN=Gramd1b PE=1 SV=2	Back alignment and function description

>sp\|Q6PEM6\|GRAM3_MOUSE GRAM domain-containing protein 3 OS=Mus musculus GN=Gramd3 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		648
255541038		644	conserved hypothetical protein [Ricinus	0.973	0.979	0.579	0.0
225453378		639	PREDICTED: GRAM domain-containing protei	0.964	0.978	0.577	0.0
255317086		618	vascular associated death 1 [Glycine max	0.905	0.949	0.540	0.0
356533291		633	PREDICTED: GRAM domain-containing protei	0.891	0.913	0.533	1e-175
449432984		648	PREDICTED: GRAM domain-containing protei	0.891	0.891	0.532	1e-173
79334443		598	GRAM domain family protein [Arabidopsis	0.905	0.981	0.487	1e-164
297848286		598	hypothetical protein ARALYDRAFT_470058 [	0.902	0.978	0.482	1e-162
147782373		638	hypothetical protein VITISV_044292 [Viti	0.882	0.896	0.465	1e-139
414590305		623	TPA: hypothetical protein ZEAMMB73_97819	0.836	0.869	0.440	1e-130
356577522		803	PREDICTED: uncharacterized protein LOC10	0.674	0.544	0.509	1e-122

>gi\|255541038\|ref\|XP_002511583.1\| conserved hypothetical protein [Ricinus communis] gi\|223548763\|gb\|EEF50252.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/659 (57%), Positives = 488/659 (74%), Gaps = 28/659 (4%)

Query: 1   MALVSASTERINLCGPTDPSSSRSTS----EATSSANVSCAADPPDRNVQFSTSPIPNGD 56
           MA+   + ERI    P + S+S+S S    E  S A +SC AD PDR+    +SP PN D
Sbjct: 1   MAVAPDTAERIGSL-PMESSASKSASVLDYEPPSPATISCDADSPDRSDLSDSSPNPNRD 59

Query: 57  VEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGF 116
            E+Q++  LR+EEYRQLFRLP EE +VQDFNCAFQESILLQGHMYLF H+ICFYSNIFGF
Sbjct: 60  FEIQAA--LRNEEYRQLFRLPPEEAIVQDFNCAFQESILLQGHMYLFSHYICFYSNIFGF 117

Query: 117 ETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGS 176
           ETKK+IPF EV++V+RAKTAGIFPNAIEIFA  +KYFFASFLSRDEAFKLI DGWLQ  +
Sbjct: 118 ETKKVIPFIEVSSVKRAKTAGIFPNAIEIFAGERKYFFASFLSRDEAFKLINDGWLQCVN 177

Query: 177 GSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIREED--LSSDSKLPA-- 232
           G+ A  E+Q+S    SS  +  ++IEKVN  S   I + DS  R+ D  LS+D  L A  
Sbjct: 178 GARAITEEQESMISGSSSLDNGIIIEKVN--SFRGINELDSDDRDNDVSLSNDYMLSAPS 235

Query: 233 --NVEMTPVEMQD--DNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKVAETN 288
              +E  P  + +  DNV++D EPV D  +     TS WN E+++ P+I + YT+V ET 
Sbjct: 236 AVEIERAPERLTEIKDNVKKDVEPV-DYITSSSSTTSIWNEEDAEPPEIRKSYTRVGETK 294

Query: 289 FQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYF 348
           F +KVE+F++ FFSDD  NFIESFH++CGDKEF+C+ W    + G++R++SFQHPIK+YF
Sbjct: 295 FPIKVEEFFNFFFSDDASNFIESFHQRCGDKEFRCSLWQPQEKLGHTRNVSFQHPIKIYF 354

Query: 349 GAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILR 408
           GAKFGSC+E QKF+VYRNSHLVIETSQE++DVPYGDYFRVEGLWDV++D   S EGC+L+
Sbjct: 355 GAKFGSCQEKQKFQVYRNSHLVIETSQEINDVPYGDYFRVEGLWDVVKDADESNEGCLLQ 414

Query: 409 VYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEGWIVVDSEGGP 468
           +YV+VAFSKKTV+KGKIVQSTLEECR+ YA WI MAH++LKQKNLE          E GP
Sbjct: 415 IYVDVAFSKKTVFKGKIVQSTLEECREAYATWINMAHELLKQKNLES--------REEGP 466

Query: 469 AYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAA 528
             + +QN +VH+E  + + ETSE+   ++ R R   ++ SLD ++ VG+L+Q N  ++ A
Sbjct: 467 --NVIQNVEVHTEVALRSVETSEKSSQSNDRGRIAQMSGSLDVNERVGDLVQENFTNATA 524

Query: 529 IASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMG 588
           +ASLLRE  T+  +F++ QS VSLILV+AF VIFLMQVSILVLLNRPQ V +ASP +Y  
Sbjct: 525 VASLLREYATRFSTFLRSQSQVSLILVVAFVVIFLMQVSILVLLNRPQTVQVASPGEYYM 584

Query: 589 AGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 647
            G+G  +G RS E++ WLERR+H+LKDEM MVE +LER+ HEH  ++AQLKD++ L  R
Sbjct: 585 GGMGSSMGDRSTEAVAWLERRIHHLKDEMFMVEGQLERLRHEHNWIKAQLKDLDGLRNR 643

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225453378\|ref\|XP_002271102.1\| PREDICTED: GRAM domain-containing protein 1A [Vitis vinifera] gi\|297734616\|emb\|CBI16667.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255317086\|gb\|ACU01863.1\| vascular associated death 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356533291\|ref\|XP_003535199.1\| PREDICTED: GRAM domain-containing protein 1A-like [Glycine max]	Back alignment and taxonomy information

>gi\|449432984\|ref\|XP_004134278.1\| PREDICTED: GRAM domain-containing protein 1A-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|79334443\|ref\|NP_171714.2\| GRAM domain family protein [Arabidopsis thaliana] gi\|332189265\|gb\|AEE27386.1\| GRAM domain family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297848286\|ref\|XP_002892024.1\| hypothetical protein ARALYDRAFT_470058 [Arabidopsis lyrata subsp. lyrata] gi\|297337866\|gb\|EFH68283.1\| hypothetical protein ARALYDRAFT_470058 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|147782373\|emb\|CAN61799.1\| hypothetical protein VITISV_044292 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|414590305\|tpg\|DAA40876.1\| TPA: hypothetical protein ZEAMMB73_978197 [Zea mays]	Back alignment and taxonomy information

>gi\|356577522\|ref\|XP_003556873.1\| PREDICTED: uncharacterized protein LOC100819859 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		648
TAIR\|locus:2205625		598	VAD1 "VASCULAR ASSOCIATED DEAT	0.640	0.693	0.595	7e-156
UNIPROTKB\|Q96CP6		724	GRAMD1A "GRAM domain-containin	0.163	0.146	0.495	2.6e-25
RGD\|1311022		723	Gramd1a "GRAM domain containin	0.163	0.146	0.495	2.3e-24
MGI\|MGI:105490		722	Gramd1a "GRAM domain containin	0.163	0.146	0.495	2.8e-24
CGD\|CAL0001781		1073	orf19.4423 [Candida albicans (	0.163	0.098	0.485	9.8e-24
UNIPROTKB\|Q59WE7		1073	CaO19.11901 "Potential GRAM do	0.163	0.098	0.485	9.8e-24
WB\|WBGene00022593		616	ZC328.3 [Caenorhabditis elegan	0.570	0.600	0.244	1.7e-23
UNIPROTKB\|Q8IYS0		662	GRAMD1C "GRAM domain-containin	0.163	0.160	0.457	4.1e-22
UNIPROTKB\|Q3KR37		738	GRAMD1B "GRAM domain-containin	0.163	0.143	0.420	1.8e-21
SGD\|S000002734		1438	YSP2 "Protein involved in prog	0.569	0.256	0.262	2.8e-21

TAIR\|locus:2205625 VAD1 "VASCULAR ASSOCIATED DEATH1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1310 (466.2 bits), Expect = 7.0e-156, Sum P(2) = 7.0e-156
 Identities = 256/430 (59%), Positives = 322/430 (74%)

Query:    41 PDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHM 100
             PDR+   ++SP P+   + QS V  +SEEYRQLFRLP++E+LVQDFNCA QESIL+QGHM
Sbjct:    43 PDRHDPSTSSPSPSRGGDNQSEVISKSEEYRQLFRLPADEILVQDFNCACQESILMQGHM 102

Query:   101 YLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASFLSR 160
             YLF+H+ICFYSNIFG+ETKKIIPF E++ V+RAKTAGIFPNAIEI A GKKYFFASFLSR
Sbjct:   103 YLFIHYICFYSNIFGYETKKIIPFAEISCVKRAKTAGIFPNAIEILAGGKKYFFASFLSR 162

Query:   161 DEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIR 220
             DEAFKLI DGWL++GS     A + +     + PQ    V+++    S D   + D  +R
Sbjct:   163 DEAFKLIHDGWLEYGS-----AVKSEGEILVTEPQVSDGVVKRARS-SMDLANELDIPVR 216

Query:   221 EEDL--SSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIP 278
             +E L  SS S LP  +    V     +V++  EP +D  + +   T +W  E++DAPK+ 
Sbjct:   217 DETLHLSSSSSLPV-ISQNGVP--PSSVQRHAEPDVDVVAAN---TFNWKPEDTDAPKLS 270

Query:   279 ECYTKVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDL 338
               +TKVAE  F + VE+F+ LFFSD  V+F+ESFH+ CGDKEF+CTSW  H + G++R++
Sbjct:   271 SDFTKVAEAKFSIPVEEFFRLFFSDGAVSFVESFHKNCGDKEFRCTSWQPHEKLGHTRNV 330

Query:   339 SFQHPIKVYFGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDD 398
             SFQHPIK+YFGAKFG C+E+QKFR+YRNSHLVIETSQE+ DVPY DYF VEG+WD+ RD 
Sbjct:   331 SFQHPIKIYFGAKFGGCQESQKFRMYRNSHLVIETSQEISDVPYADYFTVEGVWDLKRDC 390

Query:   399 GGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKPEG 458
               S EGCIL VYVNVAFSK+TVWKGKIVQSTLEECR+ YA WI MAH++LKQK LE  EG
Sbjct:   391 RDSVEGCILDVYVNVAFSKRTVWKGKIVQSTLEECREAYAHWIRMAHELLKQKKLENQEG 450

Query:   459 WIVVDSEGGP 468
               +++ +G P
Sbjct:   451 NKLIE-DGEP 459

GO:0005634 "nucleus" evidence=ISM

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB\|Q96CP6 GRAMD1A "GRAM domain-containing protein 1A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1311022 Gramd1a "GRAM domain containing 1A" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:105490 Gramd1a "GRAM domain containing 1A" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

CGD\|CAL0001781 orf19.4423 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q59WE7 CaO19.11901 "Potential GRAM domain protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

WB\|WBGene00022593 ZC328.3 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8IYS0 GRAMD1C "GRAM domain-containing protein 1C" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3KR37 GRAMD1B "GRAM domain-containing protein 1B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

SGD\|S000002734 YSP2 "Protein involved in programmed cell death" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019086001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (640 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		648
cd13220		111	cd13220, PH-GRAM_GRAMDC, GRAM domain-containing pr	6e-54
cd13219		161	cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-conta	2e-20
cd13351		125	cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain fami	3e-17
smart00568		60	smart00568, GRAM, domain in glucosyltransferases,	1e-14
pfam02893		60	pfam02893, GRAM, GRAM domain	5e-13
cd13217		100	cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and	2e-11
cd13349		135	cd13349, PH-GRAM1_TBC1D8, TBC1 domain family membe	2e-11
cd13350		135	cd13350, PH-GRAM1_TBC1D8B, TBC1 domain family memb	5e-09
cd13216		117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	3e-07
cd13354		114	cd13354, PH-GRAM2_TCB1D9_TCB1D9B, TBC1 domain fami	3e-07
cd10570		94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	2e-05

>gnl\|CDD\|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain	Back alignment and domain information

 Score =  179 bits (457), Expect = 6e-54
 Identities = 56/108 (51%), Positives = 74/108 (68%)

Query: 71  RQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAV 130
           +    LP +E L+ D++CA Q  ILLQG +Y+  + ICFYSNIFG+ETK +IPF ++T++
Sbjct: 1   KLFKSLPDDERLIDDYSCALQRDILLQGRLYISENHICFYSNIFGWETKLVIPFKDITSI 60

Query: 131 RRAKTAGIFPNAIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGS 178
            + KTAG+FPNAI+I    +KYFFASFLSRD  F LIT  W       
Sbjct: 61  EKKKTAGLFPNAIQIETLTEKYFFASFLSRDSTFDLITRVWSNALLEK 108

The GRAMDC proteins are membrane proteins. Nothing is known about its function. Members include: GRAMDC1A, GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and GRAMDC-like proteins. All of the members, except for GRAMDC4 are included in this hierarchy. Each contains a single PH-GRAM domain at their N-terminus. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 111

>gnl\|CDD\|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain	Back alignment and domain information

>gnl\|CDD\|241505 cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1	Back alignment and domain information

>gnl\|CDD\|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins	Back alignment and domain information

>gnl\|CDD\|217271 pfam02893, GRAM, GRAM domain	Back alignment and domain information

>gnl\|CDD\|241371 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1	Back alignment and domain information

>gnl\|CDD\|241503 cd13349, PH-GRAM1_TBC1D8, TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1	Back alignment and domain information

>gnl\|CDD\|241504 cd13350, PH-GRAM1_TBC1D8B, TBC1 domain family member 8B (TBC1D8B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1	Back alignment and domain information

>gnl\|CDD\|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2	Back alignment and domain information

>gnl\|CDD\|241508 cd13354, PH-GRAM2_TCB1D9_TCB1D9B, TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2	Back alignment and domain information

>gnl\|CDD\|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		648
KOG1032		590	consensus Uncharacterized conserved protein, conta	100.0
PF02893		69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.7
smart00568		61	GRAM domain in glucosyltransferases, myotubularins	99.58
KOG4347		671	consensus GTPase-activating protein VRP [General f	98.53
KOG1032		590	consensus Uncharacterized conserved protein, conta	98.33
PF14844		106	PH_BEACH: PH domain associated with Beige/BEACH; P	97.52
PF14470		96	bPH_3: Bacterial PH domain	97.42
PF10698		159	DUF2505: Protein of unknown function (DUF2505); In	96.57
cd01201		108	Neurobeachin Neurobeachin Pleckstrin homology-like	95.14
cd08868		208	START_STARD1_3_like Cholesterol-binding START doma	90.58
PF11696		642	DUF3292: Protein of unknown function (DUF3292); In	89.97
cd08904		204	START_STARD6-like Lipid-binding START domain of ma	89.63
cd08905		209	START_STARD1-like Cholesterol-binding START domain	88.9
cd08906		209	START_STARD3-like Cholesterol-binding START domain	87.93
cd08876		195	START_1 Uncharacterized subgroup of the steroidoge	84.8
cd08871		222	START_STARD10-like Lipid-binding START domain of m	84.78
PF00407		151	Bet_v_1: Pathogenesis-related protein Bet v I fami	84.62
cd05018		144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	82.46
PF11605		89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	80.03

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=4.7e-46  Score=419.17  Aligned_cols=472  Identities=24%  Similarity=0.337  Sum_probs=344.8

Q ss_pred             hhhhhhhhhhCC--CCCCCeeeeEEEEEEeecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCC
Q 006377           64 TLRSEEYRQLFR--LPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN  141 (648)
Q Consensus        64 ~~rn~~F~~lF~--LP~~E~LI~~f~CaL~r~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pn  141 (648)
                      ...+..|+..|.  +|++|.|+.+|+|||+|.|++||||||+++||||||++|||.++++|||.+|+.|+|.++++++||
T Consensus       103 ~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn  182 (590)
T KOG1032|consen  103 LLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPN  182 (590)
T ss_pred             hhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCc
Confidence            556667777773  899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCeEEEEeccCCHHHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCCCCcccccccccCCCCCCCCcCccccc
Q 006377          142 AIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIRE  221 (648)
Q Consensus       142 aI~I~T~~~k~~F~SF~~RD~a~~lI~~~w~~~~~~a~~~~eq~~~~s~~ss~~n~~v~~e~~~~s~~~~~s~~~~~~~~  221 (648)
                      +|+|.|...+|+|+||.+||.+|++|..+-+.....           ..+.-.+.++...     .....+   ++..++
T Consensus       183 ~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~-----------s~s~~~~~~~l~~-----~~~~~~---~~~~~~  243 (590)
T KOG1032|consen  183 AIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDS-----------SGSPRADSDYLSS-----VEPEVN---DDQQGN  243 (590)
T ss_pred             ceEEecCCCcceeeecccCccHHHHHHHhhhhcccc-----------cCCccccchhccc-----CCCCcC---cccccc
Confidence            999999999999999999999999885443322110           0000000010000     000000   000000


Q ss_pred             ccCCCCCCCCCccCCCCccccCCCccccccCcccCCCCCCCCCCcCCCCCC----CCCCCCcccceeeeeEEecCHHHHH
Q 006377          222 EDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENS----DAPKIPECYTKVAETNFQMKVEDFY  297 (648)
Q Consensus       222 ~~~S~~s~~p~~v~st~~~d~~~n~~~~~~~v~~~d~~~~~~~f~~~~e~~----~~P~~pe~~~~v~e~~fpisv~~~F  297 (648)
                          .+        ..+.....    +              ..|+...++.    -.-.++...-++.+..|++++..||
T Consensus       244 ----~~--------~~~~~s~~----~--------------~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~  293 (590)
T KOG1032|consen  244 ----VD--------NSQSPSAL----Q--------------NSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFF  293 (590)
T ss_pred             ----cc--------cCCCcccc----c--------------cccCCCccccccccccccccccccccccccccccccccc
Confidence                00        00000000    0              0000000000    0001223334788899999999999


Q ss_pred             hhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEeeeeeccCCceeeeeEEEEEEEeeCC-eEEEEEeEe
Q 006377          298 SLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNS-HLVIETSQE  376 (648)
Q Consensus       298 ~lLFgD~s~~F~~~f~~~rg~tdi~~tpW~~~~~g~~~R~isY~~pl~~p~GPK~t~c~etQki~~~~~~-~~VIetst~  376 (648)
                      +++|+|+  .|+..|.+.++..++...+|.....+...|.++|++++..+.|||.+.|..+|++.+++.. +|.+..++.
T Consensus       294 ~~lf~d~--~~~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~  371 (590)
T KOG1032|consen  294 SLLFGDN--TFFFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETL  371 (590)
T ss_pred             eeeccCc--ceeeeccccccccccccccccCCCccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheec
Confidence            9999976  4778889999999999999998888899999999999999999999999999999888665 477888999


Q ss_pred             eCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeeccchhhhhcchH--HHHHHHHHHHHHHHHHHHhhccCC
Q 006377          377 VHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTL--EECRDVYAMWIGMAHDVLKQKNLE  454 (648)
Q Consensus       377 t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~--~g~ke~~~~wv~~~~e~l~~~~~e  454 (648)
                      +++||||++|.|.+||+|.|.+.   ..|+|+++..|.|.|++|.+.+++..+.  +.+-+.+..++....+..+..+.+
T Consensus       372 ~~~vps~~~f~v~~~y~i~~~~~---~~~~l~v~~~V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~~~~  448 (590)
T KOG1032|consen  372 TPDVPSGDSFYVKTRYLISRAGS---NSCKLKVSTSVEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQEKE  448 (590)
T ss_pred             cCCccccceeeeeEEEEEEecCC---cceeecceeEEEeccCchhhccccccccchhhHHHHHHHHHhccHHHHHhhccc
Confidence            99999999999999999999863   4899999999999999999999988775  223333333332222221111111


Q ss_pred             CCCCcccccCCCCCCccccccCccccceeecccCccccccccCCccccccccCcccccccccccccccccchhHHHHHHH
Q 006377          455 KPEGWIVVDSEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLR  534 (648)
Q Consensus       455 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (648)
                      ....  ..            +.    +..+++                   .|.+.+                  -..++
T Consensus       449 ~~~~--~~------------~~----~~~v~~-------------------~~~~v~------------------~~~~~  473 (590)
T KOG1032|consen  449 DELT--YE------------GS----PWEVEK-------------------PGGTVR------------------QLSYK  473 (590)
T ss_pred             cccc--cc------------CC----CccccC-------------------CCceee------------------eeccc
Confidence            1000  00            00    010111                   111001                  11134


Q ss_pred             HHHhhhhccccccCCceeehhhHHHHHHHHhheeeeeecCCCceeecCCCcccCCCcccCCCCCCccchHHHHHHhhchh
Q 006377          535 ESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLK  614 (648)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  614 (648)
                      |.|-+..+..+++.+...+.+.+...|++|+..|+.|...|-.-+.+.|.+|.   .+...+..-..+..|+.+|++-|+
T Consensus       474 ~~~~~~i~~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~---~~~~~~~~v~~~~~~~~~~~~~l~  550 (590)
T KOG1032|consen  474 EVWNKPISPDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYR---EALDETSKVKTTLVWVSFRIEWLK  550 (590)
T ss_pred             cccccccccccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhh---hhhcccchhhhhhHHHHHHHHHHH
Confidence            55777777888888888888888888999999999999999999999999994   334556677889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhc
Q 006377          615 DEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR  647 (648)
Q Consensus       615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  647 (648)
                      +.|.+|.+..+.||...+.|+..+..||+|.++
T Consensus       551 ~~~~~~~~~k~~~r~~~~~l~~~~~~l~~~~~~  583 (590)
T KOG1032|consen  551 DIKMEARKIKQILRNDQDLLEVLFSLLEKLSQS  583 (590)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999998653

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins	Back alignment and domain information

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins	Back alignment and domain information

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]	Back alignment and domain information

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]	Back alignment and domain information

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C	Back alignment and domain information

>PF14470 bPH_3: Bacterial PH domain	Back alignment and domain information

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria	Back alignment and domain information

>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain	Back alignment and domain information

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins	Back alignment and domain information

>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function	Back alignment and domain information

>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins	Back alignment and domain information

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins	Back alignment and domain information

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins	Back alignment and domain information

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family	Back alignment and domain information

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins	Back alignment and domain information

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms	Back alignment and domain information

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)	Back alignment and domain information

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		648
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 52.2 bits (124), Expect = 6e-07
 Identities = 59/374 (15%), Positives = 116/374 (31%), Gaps = 98/374 (26%)

Query: 327 HRHYEFGYSR-DLSFQHPIKVY---FGAKFGSCKETQKFRVYRNSHLVIETSQEVHDVPY 382
           H H +F        ++  + V+   F   F  CK+ Q     ++    I + +E+  +  
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNF-DCKDVQDMP--KS----ILSKEEIDHI-I 55

Query: 383 GDYFRVEG---LWDVMRDDGGSKEGCILRVYVNVAFSK-----KTVWKGKIVQSTL---- 430
                V G   L+  +          +++ +V            +  K +  Q ++    
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEE----MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 431 -EECRDV----------YAMWIGMAHDVLKQKNLE-KPEGWIVVDSEGGP-----AYSTV 473
             E RD           Y +     +  L+Q  LE +P   +++D   G      A    
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 474 QNDDVHSE---RV--VNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAA 528
            +  V  +   ++  +N        CN+   +  L +   L   Q   N       D ++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKN-----CNSPETV--LEMLQKL-LYQIDPNWTS--RSDHSS 221

Query: 529 IASLLRESMTKCCS--FVKRQSGVSL-IL-------VI-AFAVIFLMQVSILVLLNRPQH 577
              L   S+          +     L +L          AF +       IL+   R + 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL----SCKILL-TTRFKQ 276

Query: 578 VHMASPPDYMGAGVGV---------GLGQRSAESI--PWLERRMHYLKDEMLMVEARLER 626
           V      D++ A              L     +S+   +L+ R   L  E+L    R   
Sbjct: 277 V-----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-- 329

Query: 627 MWHEHAVLRAQLKD 640
                +++   ++D
Sbjct: 330 ----LSIIAESIRD 339

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		648
2hth_B		140	Vacuolar protein sorting protein 36; GLUE domain,	92.69
1lw3_A		657	Myotubularin-related protein 2; protein-phosphate	90.99
2cay_A		145	VPS36 PH domain, vacuolar protein sorting protein	90.78
2qim_A		158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	90.71
1icx_A		155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	90.58
1zsq_A		528	Myotubularin-related protein 2; protein-phospholip	90.37
4a8u_A		159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	89.59
2vq5_A		201	S-norcoclaurine synthase; lyase, S- norcoclaurine	89.18
1em2_A		229	MLN64 protein; beta barrel, lipid binding protein;	88.92
1e09_A		159	PRU AV 1; allergen, major cherry allergen, pathoge	88.75
1tw0_A		157	Pathogenesis-related class 10 protein SPE-16; seve	88.56
2flh_A		155	Cytokinin-specific binding protein; zeatin, pathog	88.44
2vjg_A		154	Major allergen DAU C 1; major carrot allergen, pat	88.22
1t77_A		414	Lipopolysaccharide-responsive and beige-like ancho	87.64
3p0l_A		221	Steroidogenic acute regulatory protein, mitochond;	86.86
2i9y_A		166	Major latex protein-like protein 28 or MLP-like pr	86.69
1jss_A		224	Stard4, cholesterol-regulated start protein 4; sta	86.32
3rws_A		168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	84.74
2r55_A		231	STAR-related lipid transfer protein 5; alpha and b	82.47
2yf0_A		512	Myotubularin-related protein 6; hydrolase; 2.65A {	81.71
2wql_A		154	Major allergen DAU C 1; pathogenesis-related prote	80.9

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A	Back alignment and structure

Probab=92.69  E-value=1.4  Score=40.78  Aligned_cols=97  Identities=18%  Similarity=0.187  Sum_probs=64.1

Q ss_pred             CCCCCeee-eEEEEEEee----cceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCC-eEEEEec-
Q 006377           76 LPSEEVLV-QDFNCAFQE----SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN-AIEIFAA-  148 (648)
Q Consensus        76 LP~~E~LI-~~f~CaL~r----~i~~~GrLYIS~~~iCF~S~ifg~~tk~vIp~~dI~~I~K~kt~~i~pn-aI~I~T~-  148 (648)
                      |..+|.++ ..-.+.|.-    .-...|++|+|.+.|||...-- ....+.|||.+|..++...+. +..+ =|.+... 
T Consensus        13 L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~-~~~s~~lpl~~v~~~e~~~~~-f~~s~Ki~l~l~~   90 (140)
T 2hth_B           13 LEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKN-HECCMAILLSQIVFIEEQAAG-IGKSAKIVVHLHP   90 (140)
T ss_dssp             CCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTC-CSCCEEEEGGGEEEEEEECCT-TSSCCEEEEEECC
T ss_pred             cCCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEEEecCCC-CceEEEEEhHHeeeeeeeccc-cccCceEEEEecC
Confidence            55566554 445566652    2457899999999999986533 357799999999999998753 3222 1222211 


Q ss_pred             -------------CeEEEEeccCC--HHHHHHHHHHHHHhc
Q 006377          149 -------------GKKYFFASFLS--RDEAFKLITDGWLQH  174 (648)
Q Consensus       149 -------------~~k~~F~SF~~--RD~a~~lI~~~w~~~  174 (648)
                                   +..++=.+|.+  .|+-+..|.+.+++.
T Consensus        91 ~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~al~~k  131 (140)
T 2hth_B           91 APPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMTQR  131 (140)
T ss_dssp             CCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred             CCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHHHHHHh
Confidence                         23455556654  688888888887764

PyMOL of 2hth

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A	Back alignment and structure

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12	Back alignment and structure

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A	Back alignment and structure

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A	Back alignment and structure

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*	Back alignment and structure

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A	Back alignment and structure

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*	Back alignment and structure

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2	Back alignment and structure

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A	Back alignment and structure

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*	Back alignment and structure

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*	Back alignment and structure

>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A	Back alignment and structure

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}	Back alignment and structure

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}	Back alignment and structure

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2	Back alignment and structure

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}	Back alignment and structure

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}	Back alignment and structure

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		648
d1t77a2		110	Lipopolysaccharide-responsive and beige-like ancho	96.22
d1zsqa1		125	Myotubularin-related protein 2, N-terminal domain	95.24
d1em2a_		214	Lipid transport domain of Mln64 {Human (Homo sapie	92.21
d1e09a_		159	Major tree pollen allergen {Sweet cherry (Prunus a	91.73
d1fm4a_		159	Major tree pollen allergen {European white birch (	91.19
d1xdfa1		157	Plant pathogenesis-related protein PR10 {Yellow lu	90.59
d2pcsa1		147	Hypothetical protein GKP20 {Geobacillus kaustophil	89.77
d1icxa_		155	Plant pathogenesis-related protein PR10 {Yellow lu	88.93
d2bk0a1		153	Major allergen api g 1 {Celery (Apium graveolens)	87.52
d1txca1		147	Plant pathogenesis-related protein PR10 {Jicama (P	87.29
d2rnrb1		108	TFIIH basal transcription factor complex p62 subun	83.69
d2caya1		130	Vacuolar protein sorting protein 36, VPS36 {Baker'	83.56
d1t17a_		148	Hypothetical protein CC1736 {Caulobacter crescentu	82.12
d1jssa_		199	Cholesterol-regulated Start protein 4 (Stard4). {M	81.04

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0042  Score=53.37  Aligned_cols=86  Identities=14%  Similarity=0.138  Sum_probs=61.5

Q ss_pred             eeeEEEEEEee-cceeceEEEEecceEEEEeccC--------------CceeEEEEeccccccccccccccccCCeEEEE
Q 006377           82 LVQDFNCAFQE-SILLQGHMYLFVHFICFYSNIF--------------GFETKKIIPFYEVTAVRRAKTAGIFPNAIEIF  146 (648)
Q Consensus        82 LI~~f~CaL~r-~i~~~GrLYIS~~~iCF~S~if--------------g~~tk~vIp~~dI~~I~K~kt~~i~pnaI~I~  146 (648)
                      ++-.-.|.+.. ..-..|++.||+++|+|...-.              .......+|++||..|-+..- .+-++||+|.
T Consensus         3 v~~s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~-ll~~~alEif   81 (110)
T d1t77a2           3 VSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRY-LLQNTALEIF   81 (110)
T ss_dssp             CSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEE-TTEEEEEEEE
T ss_pred             EEEEeeEEEEEecceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhh-cCCceEEEEE
Confidence            44567899875 5568999999999999986411              011234799999999998653 4568899999


Q ss_pred             ecCeEEEEeccCCHHHHHHHHH
Q 006377          147 AAGKKYFFASFLSRDEAFKLIT  168 (648)
Q Consensus       147 T~~~k~~F~SF~~RD~a~~lI~  168 (648)
                      +.+.+=+|-.|.+.+..-+.+.
T Consensus        82 ~~~~~s~~~~F~~~~~~~~v~~  103 (110)
T d1t77a2          82 MANRVAVMFNFPDPATVKKVVN  103 (110)
T ss_dssp             ETTSCEEEEECSSHHHHHHHHH
T ss_pred             EcCCcEEEEEeCCHHHHHHHHH
Confidence            9765444446988655544444

PyMOL of d1t77a2

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}	Back information, alignment and structure

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}	Back information, alignment and structure

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}	Back information, alignment and structure

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}	Back information, alignment and structure

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}	Back information, alignment and structure

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}	Back information, alignment and structure

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}	Back information, alignment and structure

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}	Back information, alignment and structure

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure