Citrus Sinensis ID: 006384
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 647 | 2.2.26 [Sep-21-2011] | |||||||
| Q921I2 | 584 | Kelch domain-containing p | yes | no | 0.712 | 0.789 | 0.375 | 3e-87 | |
| Q8TBB5 | 520 | Kelch domain-containing p | yes | no | 0.737 | 0.917 | 0.365 | 6e-85 | |
| Q5R8W1 | 522 | Kelch domain-containing p | yes | no | 0.695 | 0.862 | 0.372 | 3e-84 | |
| Q08979 | 651 | Kelch repeat-containing p | yes | no | 0.664 | 0.660 | 0.311 | 2e-55 | |
| P87061 | 1147 | Tip elongation aberrant p | yes | no | 0.350 | 0.197 | 0.275 | 2e-23 | |
| O14248 | 1125 | Tip elongation aberrant p | no | no | 0.310 | 0.178 | 0.277 | 5e-21 | |
| Q7M3S9 | 943 | RING finger protein B OS= | yes | no | 0.318 | 0.218 | 0.275 | 2e-20 | |
| P38853 | 1164 | Kelch repeat-containing p | no | no | 0.347 | 0.193 | 0.258 | 8e-19 | |
| Q54C94 | 1127 | Ras guanine nucleotide ex | no | no | 0.321 | 0.184 | 0.262 | 2e-18 | |
| P50090 | 882 | Kelch repeat-containing p | no | no | 0.360 | 0.264 | 0.253 | 2e-17 |
| >sp|Q921I2|KLDC4_MOUSE Kelch domain-containing protein 4 OS=Mus musculus GN=Klhdc4 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 191/509 (37%), Positives = 281/509 (55%), Gaps = 48/509 (9%)
Query: 13 EKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNC 72
EKT K K KR+R+E E+D++A++ Q +AKK +V E P PSPR N
Sbjct: 15 EKTAAKMEKKVSKRSRKE------EEDLEALIAHFQTLDAKKTQV-TETPCPPPSPRLNA 67
Query: 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV- 131
SL+ +P K+ ELIL+GGE++NG KT++Y +LY Y + K W + P PP R AHQAV
Sbjct: 68 SLSAHPEKD-ELILFGGEYFNGQKTFMYNELYIYSIRKDTWTKVDIPGPPPRRCAHQAVV 126
Query: 132 --SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189
L++FGGEF SP+ E+F+HYKD W+L L T WEQ+ G PS RSGHRMV +K
Sbjct: 127 VPQGGGQLWVFGGEFASPDGEQFYHYKDLWVLHLATKTWEQIRSTGGPSGRSGHRMVAWK 186
Query: 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEV 248
++I+FGGF+++ R+ YY+D+Y F LD F+W ++ P P+PRSG V Q +
Sbjct: 187 RQLILFGGFHESARDYIYYSDVYTFSLDTFQWSKLSPSGAG--PTPRSGCLMAVTPQGSI 244
Query: 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-----TWEWSKVKKIGMPPGPRAGFSMC 303
+YGGYSK+ K +KG HSD++ L P W W+++ G+ P R+GFS+
Sbjct: 245 AIYGGYSKQ--RVKKDVDKGTQHSDMFLLKPAEGGEGKWAWTRINPSGVKPTARSGFSVA 302
Query: 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSS 362
V + L+FGGV D E + + S F ++LY + RW+ +L+ KS K K ++
Sbjct: 303 VAPNHQILVFGGVCDEEEEESLEGSFF-SDLYIYDAAKSRWFAAQLKGPKSEKKKRRRGK 361
Query: 363 EQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGV 422
+ P + +E + E E +E + + + + V+ G+
Sbjct: 362 AEDPEGTT---------EQETGGSSAPEPLEVIKEVVSEDGTVVTIKQ-----VLTPSGL 407
Query: 423 LAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITL 482
G +P S K D +PC R N+ + V LYVYGGM E D+++TL
Sbjct: 408 -----GVQP--SPKADDSASEASSTGQEPCPRSNAMLAVKHGLLYVYGGMFEAGDRQVTL 460
Query: 483 DDLYSLNLSKLDEWKCII---PASESEWV 508
DLY L+L K++EWK ++ P S+ EW+
Sbjct: 461 SDLYCLDLHKMEEWKTLVEMDPKSQ-EWL 488
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Mus musculus (taxid: 10090) |
| >sp|Q8TBB5|KLDC4_HUMAN Kelch domain-containing protein 4 OS=Homo sapiens GN=KLHDC4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (808), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 198/541 (36%), Positives = 298/541 (55%), Gaps = 64/541 (11%)
Query: 13 EKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNC 72
EKT K K KR+R+E E+D++A++ Q +AK+ + VE P PSPR N
Sbjct: 15 EKTAAKMEKKVSKRSRKE------EEDLEALIAHFQTLDAKRTQT-VELPCPPPSPRLNA 67
Query: 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV- 131
SL+++P K+ ELIL+GGE++NG KT++Y +LY Y+ K W + P+ PP R AHQAV
Sbjct: 68 SLSVHPEKD-ELILFGGEYFNGQKTFLYNELYVYNTRKDTWTKVDIPSPPPRRCAHQAVV 126
Query: 132 --SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189
L++FGGEF SPN E+F+HYKD W+L L T WEQ+ G PS RSGHRMV +K
Sbjct: 127 VPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGGPSGRSGHRMVAWK 186
Query: 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEV 248
++I+FGGF+++ R+ YYND+Y F+LD F W ++ P P+PRSG Q V Q +
Sbjct: 187 RQLILFGGFHESTRDYIYYNDVYAFNLDTFTWSKLSPS--GTGPTPRSGCQMSVTPQGGI 244
Query: 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-----TWEWSKVKKIGMPPGPRAGFSMC 303
+YGGYSK+ K +KG HSD++ L P W W+++ G+ P PR+GFS+
Sbjct: 245 VVYGGYSKQRV--KKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFSVA 302
Query: 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSS 362
+ + L FGGV D E + + F N+LY + +RW+ +L+ KS K K ++
Sbjct: 303 MAPNHQTLFFGGVCDEEEEES-LSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRGR 361
Query: 363 EQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVP--NSVIVDD 420
+++P + P + + + E V +V+
Sbjct: 362 KEEPEGGS-----RPACG-----------------GAGTQGPVQLVKEVVAEDGTVVTIK 399
Query: 421 GVLAAK-SGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQE 479
VL A S G+P S+ + ++++ P PC R N+ + V LYVYGGM E D++
Sbjct: 400 QVLTAPGSAGQP-RSEDEDSLEEAGSP-APGPCPRSNAMLAVKHGVLYVYGGMFEAGDRQ 457
Query: 480 ITLDDLYSLNLSKLDEWKCII---PASESEWVEASE----------GEDEDDDEDDSEDE 526
+TL DL+ L+L +++ WK ++ P ++ EW+E ++ E DDED E+
Sbjct: 458 VTLSDLHCLDLHRMEAWKALVEMDPETQ-EWLEETDSEEDSEEVEGAEGGVDDEDSGEES 516
Query: 527 G 527
G
Sbjct: 517 G 517
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Homo sapiens (taxid: 9606) |
| >sp|Q5R8W1|KLDC4_PONAB Kelch domain-containing protein 4 OS=Pongo abelii GN=KLHDC4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 187/502 (37%), Positives = 277/502 (55%), Gaps = 52/502 (10%)
Query: 13 EKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNC 72
EKT K K KR+R+E E+D++A++ Q +AK+ + VE P PSPR N
Sbjct: 15 EKTAAKMEKKVSKRSRKE------EEDLEALIAHFQTLDAKRTQT-VEAPCPPPSPRLNA 67
Query: 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV- 131
SL+++P K+ ELIL+GGE++NG KT++Y +LY Y++ K W + P+ PP R AHQAV
Sbjct: 68 SLSVHPEKD-ELILFGGEYFNGQKTFLYNELYVYNIRKDTWTKVDIPSPPPRRCAHQAVV 126
Query: 132 --SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189
L++FGGEF SPN E+F+HYKD W+L L T WEQ+ G PS RSGHRMV +K
Sbjct: 127 VPQGGGQLWVFGGEFASPNGEQFYHYKDLWVLHLATKTWEQVKSTGSPSGRSGHRMVAWK 186
Query: 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEV 248
++I+FGGF+++ R+ YYND+Y F+LD F W ++ P P+PRSG Q V Q +
Sbjct: 187 RQLILFGGFHESTRDYIYYNDVYTFNLDTFTWSKLSPS--GTGPTPRSGCQMSVTPQGGI 244
Query: 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-----TWEWSKVKKIGMPPGPRAGFSMC 303
+YGGYSK+ K ++G HSD++ L P W W+++ G+ P PR+GFS
Sbjct: 245 IIYGGYSKQRV--KKDVDRGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFSAA 302
Query: 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSS 362
+ + L FGGV D E + + F N+LY + +RW+ +L+ KS K K ++
Sbjct: 303 MALNHQTLFFGGVCDEEEEES-LAGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRGR 361
Query: 363 EQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVP--NSVIVDD 420
E + ++ + + + E V +V+
Sbjct: 362 ----------------------KEESEGGSKLACGGAGTQGPVQVVKEVVAEDGTVVTIK 399
Query: 421 GVLAAK-SGGKP-YESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQ 478
VLAA S G+P E + + S P PC R N+ + V LYVYGGM E D+
Sbjct: 400 QVLAAPGSAGQPRSEDEDSPEEAGSSAP---GPCPRSNAMLAVKHGVLYVYGGMFEAGDR 456
Query: 479 EITLDDLYSLNLSKLDEWKCII 500
++TL DL+ L+L +++ WK ++
Sbjct: 457 QVTLSDLHCLDLHRMEAWKALV 478
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Pongo abelii (taxid: 9601) |
| >sp|Q08979|KEL3_YEAST Kelch repeat-containing protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KEL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 148/475 (31%), Positives = 239/475 (50%), Gaps = 45/475 (9%)
Query: 37 EDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPL-KETELILYGGEFYNGN 95
+ D+D IL S K++ + + V + +V PS R++ + NP + EL ++GGEF +
Sbjct: 48 DQDLDEILSSFSKKQIELEHVDIT-SVEKPSCRTHPLMFANPQHNKHELFIFGGEFTDPE 106
Query: 96 K--TYVYGDLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSWKNYLYIFGGEFTSPNQERF 152
T+ Y DLY Y ++ WK S N+P PRS A AV + GGEF+SP Q +F
Sbjct: 107 TKLTHFYNDLYSYSIKNNSWKKYVSQNAPLPRSSAAVAVHPSGIALLHGGEFSSPKQSKF 166
Query: 153 HHYKDFWMLDLKTNQWEQLNLKG---CPSPRSGHRMVLYKHKIIVFGGFYDTLR-EVRYY 208
+HY D W+ D ++ +L G PS RSGHR++ +K+ I+FGGF D + Y
Sbjct: 167 YHYSDTWLFDCVERKFTKLEFGGRDSSPSARSGHRIIAWKNYFILFGGFRDLGNGQTSYL 226
Query: 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKG 268
NDL+ FD+ +KW +++ P RSG F + L GGY K ++ + KG
Sbjct: 227 NDLWCFDISTYKWTKLETNSK---PDARSGHCFIPTDNSAILMGGYCKIIAKNNKNLMKG 283
Query: 269 IIHSDLWSL----DPRTWEWSKVKKIGMPPGPRAGFSMCVHKK-RALLFGGVVDMEMKGD 323
I +D W L DP+ W+W K+K P PR G+S + K+ +++ FGGV D++ +
Sbjct: 284 KILNDAWKLNLTPDPKKWQWEKLKNFKNQPSPRVGYSFNLWKQNKSVAFGGVYDLQETEE 343
Query: 324 VIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDK----LKKSSEQKPNSSALHEKLNPIE 379
+ S+F N+LY F L+ ++W L ++ ++ T K K K L + LN I
Sbjct: 344 SLESVFYNDLYMFHLELNKWSKLRIKPQRQTNSKNSPATSKRKSNKDQEKELQDLLNSIL 403
Query: 380 AEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSD 439
A+ ++ + + D+ S PNS+ D+ E D
Sbjct: 404 AK--------------SNLNDDDDDNDDNSTTGPNSIDDDEDN----------EDDSDLD 439
Query: 440 MQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
Q+ + P R N+ V D+L++Y G+ E+ +++ ++ YS++L+KLD
Sbjct: 440 NQEDITISNQLPHPRFNAATCVVGDSLFIYSGVWELGEKDYPINSFYSIDLNKLD 494
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P87061|TEA1_SCHPO Tip elongation aberrant protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 120/269 (44%), Gaps = 42/269 (15%)
Query: 94 GNKTYVYG----------DLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSWKNYLYIFGG 142
G + Y++G DL+ ++ ++ + S +P PR H ++ N +FGG
Sbjct: 92 GQEIYIFGGVASDSQPKNDLWVLNLATSQFTSLRSLGETPSPRLGHASILIGNAFIVFGG 151
Query: 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDT 201
+R ++L+ + W++ N G PS R GH + KI +FGG
Sbjct: 152 LTNHDVADR--QDNSLYLLNTSSLVWQKANASGARPSGRYGHTISCLGSKICLFGG---- 205
Query: 202 LREVRYY-NDLYVFDLDQFKWQEIKPRFGSMW---PSPRSGFQFFVYQDEVFLYGGYSKE 257
R + YY NDL FDL+ + + S+ P R+G F + D+++++GG
Sbjct: 206 -RLLDYYFNDLVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTFSDKLYIFGG---- 260
Query: 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317
++ +DLW P+ WSKV+ G+ P PRAG + V + +FGG
Sbjct: 261 -------TDGANFFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAASVVEGILYVFGGRAS 313
Query: 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
FLN+LY F+L + WY L
Sbjct: 314 --------DGTFLNDLYAFRLSSKHWYKL 334
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Cell polarity protein. Acts as an end marker, directing the growth machinery to the cell poles. Involved in the regulation of microtubular organization, affecting the maintenance of a single central axis. Prevents the curling of microtubule tips around the cell ends and is required for the retention of polarity factors such as pom1, tip1 and tea2 at the cell ends, necessary for the cell to grow in a straight line. Links tip1 and tea4 in a common complex. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O14248|TEA3_SCHPO Tip elongation aberrant protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 107/252 (42%), Gaps = 51/252 (20%)
Query: 120 NSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS 178
N P R H V + +Y+FGG + + + + K+NQW ++ + PS
Sbjct: 108 NDSPARVGHSIVCSADTIYLFGGCDSETDSTFEVGDNSLYAYNFKSNQWNLVSTQSPLPS 167
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFD----------------------- 215
PR+GH M+L K+ +FGG + +Y ND+++FD
Sbjct: 168 PRTGHSMLLVDSKLWIFGGEC----QGKYLNDIHLFDTKGVDRRTQSELKQKANANNVEK 223
Query: 216 ----LDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIH 271
D+ W P S P PRS + Q ++F++GG++ + G +
Sbjct: 224 ANMEFDETDWSWETPFLHSSSPPPRSNHSVTLVQGKIFVHGGHN----------DTGPL- 272
Query: 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLN 331
SDLW D T W++V+ IG PGPR G ++GG + KG L LN
Sbjct: 273 SDLWLFDLETLSWTEVRSIGRFPGPREGHQATTIDDTVYIYGG---RDNKG-----LILN 324
Query: 332 ELYGFQLDNHRW 343
EL+ F RW
Sbjct: 325 ELWAFNYSQQRW 336
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Acts as a cell end marker required for efficient new end take-off (NETO), whereby growth is activated at the cell end to generate bipolarity in extending cells. Also required for proper placement of the septum. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2 | Back alignment and function description |
|---|
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 118/243 (48%), Gaps = 37/243 (15%)
Query: 88 GGEFYNGNKTYVYGDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVSWKNY---------L 137
G + GN + D+ Y++ W K+ + N+P R H AV +++ +
Sbjct: 30 GFIVFGGNSNRAFNDIQYYNIFNNSWSKIEAVGNAPSERYGHSAVLYQSQSRPYSDSYQI 89
Query: 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIV 194
FGG TS + D +L + +N+ W+Q+ K R+GH V+Y+ ++V
Sbjct: 90 IFFGGRATSK------PFSDINILYVNSNRSFIWKQVTTKSIEG-RAGHTAVVYRQNLVV 142
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFF-VYQDEVFLYGG 253
FGG + + +YYN + +F L+ +W++ G + PS R+ F V +++F++GG
Sbjct: 143 FGGHNN--HKSKYYNSVLLFSLESNEWRQ--QVCGGVIPSARATHSTFQVNNNKMFIFGG 198
Query: 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC-VHKKRALLF 312
Y + ++D++ LD TW W KV+ G PP PR+G S + + ++F
Sbjct: 199 YDGKK-----------YYNDIYYLDLETWIWKKVEAKGTPPKPRSGHSATMIQNNKLMIF 247
Query: 313 GGV 315
GG
Sbjct: 248 GGC 250
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P38853|KEL1_YEAST Kelch repeat-containing protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KEL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 53/278 (19%)
Query: 95 NKTYVYGDLYRYDVEKQEWKVISSPN--------------SPPPRSAHQAVSWKNYLYIF 140
N+ YV G L+ V W + + N +PPPR H AV N +F
Sbjct: 138 NQIYVIGGLHDQSVYGDTWILTAFDNATRFSTTTIDISEATPPPRVGHAAVLCGNAFVVF 197
Query: 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP--RSGHRMVLY-----KHKII 193
GG+ N+E D ++L++ + +W G P P R GH++ + K K+
Sbjct: 198 GGDTHKVNKEGLMD-DDIYLLNINSYKWTVPAPVG-PRPLGRYGHKISIIATTQMKTKLY 255
Query: 194 VFGGFYDTLREVRYYNDLYVFDLDQFK-----WQEIKPRFGSMWPSPRSGFQFFVYQDEV 248
VFGG +D Y+NDL V+DL F+ W+ +KPR + P P + F Y ++
Sbjct: 256 VFGGQFDD----TYFNDLAVYDLSSFRRPDSHWEFLKPR--TFTPPPITNFTMISYDSKL 309
Query: 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKR 308
+++GG + +G+++ D++ DP +W + G P P + V+
Sbjct: 310 WVFGG----------DTLQGLVN-DVFMYDPAINDWFIIDTTGEKPPPVQEHATVVYNDL 358
Query: 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
+ GG + + +LN +Y L + +W+ L
Sbjct: 359 MCVVGGKDEHDA--------YLNSVYFLNLKSRKWFKL 388
|
Has a role in cell morphogenesis and cell fusion and may antagonize the PKC1 pathway. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q54C94|GEFF_DICDI Ras guanine nucleotide exchange factor F OS=Dictyostelium discoideum GN=gefF PE=2 SV=1 | Back alignment and function description |
|---|
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 24/232 (10%)
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
L+GG +G+ T D Y + + W +++ ++P R+ H V + N +YIFGG
Sbjct: 215 LFGGTLPDGSYT---NDFYTFQFAIKAWTILTFGSAPSIRTRHTGVLYNNSMYIFGGY-- 269
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFY--DTL 202
SP+ + D ++ T W ++ +G PSPR GH V+ +IVFGG T
Sbjct: 270 SPSGPK----NDIYVFSFDTQTWSEVQTEGTKPSPRYGHTAVVESGHMIVFGGISCDQTT 325
Query: 203 REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262
++ ND++ +LD +W ++ + PSPR+ +++ ++++GG ++
Sbjct: 326 KQQTVNNDIFSLNLDTKQWSQV---LSTCPPSPRTHHTATMHKGNMYVFGGQDQQ----S 378
Query: 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
NQ E I+H W+ + W ++ G PR+ S + + + GG
Sbjct: 379 NQVED-IVHCYTWASN----SWKSIQFEGSSMTPRSDHSAVLFQDSIFISGG 425
|
Promotes the exchange of Ras-bound GDP by GTP. Dictyostelium discoideum (taxid: 44689) |
| >sp|P50090|KEL2_YEAST Kelch repeat-containing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KEL2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 122/284 (42%), Gaps = 51/284 (17%)
Query: 93 NGNKTYVYGDLYRYDVEKQEWKVISSP--------------NSPPPRSAHQAVSWKNYLY 138
N N+ +V G L+ V W++ ++ N+PPPR H + N
Sbjct: 96 NDNRIFVTGGLHDQSVYGDVWQIAANADGTSFTSKRIDIDQNTPPPRVGHASTICGNAYV 155
Query: 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLY-----KHKI 192
+FGG+ N+ D ++ ++ + +W G P R GH++ + + K+
Sbjct: 156 VFGGDTHKLNKNGLLD-DDLYLFNINSYKWTIPQPIGRRPLGRYGHKISIIASNPMQTKL 214
Query: 193 IVFGGFYDTLREVRYYNDLYVFDLDQFK-----WQEIKPRFGSMWPSPRSGFQFFVYQDE 247
+FGG D Y+NDL VFDL F+ W+ ++P G + P P + Y ++
Sbjct: 215 YLFGGQVDE----TYFNDLVVFDLSSFRRPNSHWEFLEP-VGDL-PPPLTNHTMVAYDNK 268
Query: 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307
++++GG + + I +D + DP EWSKVK G P P + V+K
Sbjct: 269 LWVFGGETPKT-----------ISNDTYRYDPAQSEWSKVKTTGEKPPPIQEHASVVYKH 317
Query: 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKE 351
+ G G + + N++Y L + +WY L KE
Sbjct: 318 LMCVLG--------GKDTHNAYSNDVYFLNLLSLKWYKLPRMKE 353
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 647 | ||||||
| 118488318 | 680 | unknown [Populus trichocarpa] | 0.927 | 0.882 | 0.799 | 0.0 | |
| 225456767 | 682 | PREDICTED: kelch domain-containing prote | 0.922 | 0.875 | 0.799 | 0.0 | |
| 147781765 | 697 | hypothetical protein VITISV_027056 [Viti | 0.930 | 0.863 | 0.786 | 0.0 | |
| 255540383 | 681 | kelch repeat protein, putative [Ricinus | 0.945 | 0.898 | 0.773 | 0.0 | |
| 356508772 | 661 | PREDICTED: kelch domain-containing prote | 0.918 | 0.898 | 0.757 | 0.0 | |
| 356518912 | 660 | PREDICTED: kelch domain-containing prote | 0.916 | 0.898 | 0.744 | 0.0 | |
| 449440586 | 668 | PREDICTED: kelch domain-containing prote | 0.911 | 0.883 | 0.766 | 0.0 | |
| 18423130 | 666 | kelch repeat-containing protein [Arabido | 0.922 | 0.896 | 0.747 | 0.0 | |
| 297792335 | 665 | kelch repeat-containing protein [Arabido | 0.921 | 0.896 | 0.755 | 0.0 | |
| 38345333 | 679 | OSJNBa0081L15.6 [Oryza sativa Japonica G | 0.935 | 0.891 | 0.688 | 0.0 |
| >gi|118488318|gb|ABK95978.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/602 (79%), Positives = 539/602 (89%), Gaps = 2/602 (0%)
Query: 28 RRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILY 87
RRETKK+SPEDDIDAILLSIQKEEAKKK+VHVE+NV APSPRSNC+LNINPLK+TELILY
Sbjct: 28 RRETKKLSPEDDIDAILLSIQKEEAKKKDVHVEENVAAPSPRSNCTLNINPLKDTELILY 87
Query: 88 GGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSP 147
GGEFYNG+KT+VYGDLYRYDVEKQEWK++SSPNSPPPRSAHQAV+WKNYLYIFGGEFTSP
Sbjct: 88 GGEFYNGSKTFVYGDLYRYDVEKQEWKLVSSPNSPPPRSAHQAVAWKNYLYIFGGEFTSP 147
Query: 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRY 207
NQERFHHYKDFWMLDLKTNQWEQLN KG PSPRSGHRMVL+KHKII+FGGFYDTLREVRY
Sbjct: 148 NQERFHHYKDFWMLDLKTNQWEQLNFKGSPSPRSGHRMVLHKHKIILFGGFYDTLREVRY 207
Query: 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267
YNDL++FDLDQFKWQEIKP+ G+MWPS RSGFQFFVYQDEVFLYGGYSKEVS+DK+ SEK
Sbjct: 208 YNDLHIFDLDQFKWQEIKPKLGAMWPSARSGFQFFVYQDEVFLYGGYSKEVSSDKSISEK 267
Query: 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMS 327
GI+HSD+WSLDPRTWEW+KVKK GMPPGPRAGFSMCVHKKRA+LFGGVVDMEM+GDV+MS
Sbjct: 268 GIVHSDMWSLDPRTWEWNKVKKSGMPPGPRAGFSMCVHKKRAMLFGGVVDMEMEGDVMMS 327
Query: 328 LFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANE 387
LFLNELYGFQLDN RWYPLELRKEKSTKD+ KKSSEQ+ +S ++K + EE N+
Sbjct: 328 LFLNELYGFQLDNRRWYPLELRKEKSTKDRSKKSSEQR-TTSFDNKKYSNDMGEEPTPND 386
Query: 388 KDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVL-AAKSGGKPYESKKKSDMQKSLLP 446
DEN EY+EEA+ +ES+ID +S + + V DG L AAK GKP S+ K +Q S+L
Sbjct: 387 PDENLEYHEEAENIESSIDEISHNLTRKITVIDGSLSAAKLDGKPGTSEAKQILQNSVLS 446
Query: 447 EIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASESE 506
E VKPCGRINSCMVVG+D LY+YGGMMEI DQEITLDDLYSLNLSKLDEWKCIIPASESE
Sbjct: 447 ETVKPCGRINSCMVVGRDMLYIYGGMMEIRDQEITLDDLYSLNLSKLDEWKCIIPASESE 506
Query: 507 WVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVAII 566
WVEASE ED+D+DED S+ EG S+ + +DDDD+ D EAR+ +GSLQ+GDAVAII
Sbjct: 507 WVEASEDEDDDEDEDASDGEGGSDSNDETDDGEDDDDDNDVEARNNGSGSLQVGDAVAII 566
Query: 567 KGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQHT 626
KGE KN+RRKEKRARIEQIRANLGLSD+QRTP PGESLKDFY+RT++YWQMAAHEHTQHT
Sbjct: 567 KGEKKNLRRKEKRARIEQIRANLGLSDAQRTPTPGESLKDFYKRTNLYWQMAAHEHTQHT 626
Query: 627 GK 628
GK
Sbjct: 627 GK 628
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456767|ref|XP_002276501.1| PREDICTED: kelch domain-containing protein 4 [Vitis vinifera] gi|297733624|emb|CBI14871.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/604 (79%), Positives = 549/604 (90%), Gaps = 7/604 (1%)
Query: 26 RARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELI 85
RARRE KKIS EDDIDAILLSIQKEEAKKKEVH+++NVPAP+PRSNCSL +NPLKETELI
Sbjct: 26 RARRENKKISEEDDIDAILLSIQKEEAKKKEVHIDENVPAPTPRSNCSLTMNPLKETELI 85
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
LYGGEFYNGNKT+VYGDLYR+D+EKQEWK+ISSPNSPPPRS+HQAV+WKNYLYIFGGEFT
Sbjct: 86 LYGGEFYNGNKTFVYGDLYRHDIEKQEWKLISSPNSPPPRSSHQAVAWKNYLYIFGGEFT 145
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
SPNQE FHHYKDFW+LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV
Sbjct: 146 SPNQECFHHYKDFWVLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
Query: 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
RY+NDL+VFDLDQFKWQEIKPR GSMWPS RSGFQFFV+QDE+FLYGGYSKEVS+DKN S
Sbjct: 206 RYFNDLHVFDLDQFKWQEIKPRLGSMWPSARSGFQFFVFQDEIFLYGGYSKEVSSDKNNS 265
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325
EKGI+HSD+WSLDPRTWEW+KVKK GMPPGPRAGFSMCVHKKRA+LFGGVVDME++GDV+
Sbjct: 266 EKGIVHSDMWSLDPRTWEWNKVKKSGMPPGPRAGFSMCVHKKRAVLFGGVVDMEVEGDVM 325
Query: 326 MSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDA 385
MSLFLNELYGFQLD HRWYPLELRKEKSTKDK+KKSS++K N + L K+ I+ E+ +
Sbjct: 326 MSLFLNELYGFQLDTHRWYPLELRKEKSTKDKVKKSSDKKYNGATLDNKIGSIDLEKCEE 385
Query: 386 NEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLL 445
N+ D+N E +EEA ++ES+ID +S + ++ V+DG + KS G+P+ES + D+Q S+
Sbjct: 386 NDGDDNLESHEEAADLESSIDEISRHMTTNITVNDGGPSIKSDGRPHESGAQLDLQNSIS 445
Query: 446 PEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASES 505
EIVKPCGRIN MVVGKDTLY+YGGMME+ DQEITLDDLY LNLSKLDEWKCIIPAS+S
Sbjct: 446 SEIVKPCGRINCSMVVGKDTLYIYGGMMEVKDQEITLDDLYCLNLSKLDEWKCIIPASKS 505
Query: 506 EWVEASEGEDEDDDEDDSEDEG-NGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVA 564
EW+EASE EDED+DEDDSEDE N GS+SDET DD++D EA+DG + SL+MGDAVA
Sbjct: 506 EWIEASEEEDEDEDEDDSEDEDCNSGSNSDET-----DDDDDVEAKDG-SRSLEMGDAVA 559
Query: 565 IIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ 624
IIKGEGKN+RRKEKRARIEQIRANLGLSDSQRTP+PGE+LKDFY+RT++YWQMAAHEHTQ
Sbjct: 560 IIKGEGKNLRRKEKRARIEQIRANLGLSDSQRTPIPGETLKDFYKRTNLYWQMAAHEHTQ 619
Query: 625 HTGK 628
HTGK
Sbjct: 620 HTGK 623
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147781765|emb|CAN61297.1| hypothetical protein VITISV_027056 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/614 (78%), Positives = 549/614 (89%), Gaps = 12/614 (1%)
Query: 26 RARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELI 85
RARRE KKIS EDDIDAILLSIQKEEAKKKEVH+++NVPAP+PRSNCSL +NPLKETELI
Sbjct: 26 RARRENKKISEEDDIDAILLSIQKEEAKKKEVHIDENVPAPTPRSNCSLTMNPLKETELI 85
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
LYGGEFYNGNKT+VYGDLYR+D+EKQEWK+ISSPNSPPPRS+HQAV+WKNYLYIFGGEFT
Sbjct: 86 LYGGEFYNGNKTFVYGDLYRHDIEKQEWKLISSPNSPPPRSSHQAVAWKNYLYIFGGEFT 145
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
SPNQE FHHYKDFW+LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV
Sbjct: 146 SPNQEXFHHYKDFWVLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
Query: 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
RY+NDL+VFDLDQFKWQEIKPR GSMWPS RSGFQFFV+QDE+FLYGGYSKEVS+DKN S
Sbjct: 206 RYFNDLHVFDLDQFKWQEIKPRLGSMWPSARSGFQFFVFQDEIFLYGGYSKEVSSDKNNS 265
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325
EKGI+HSD+WSLDPRTWEW+KVKK GMPPGPRAGFSMCVHKKRA+LFGGVVDME++GDV+
Sbjct: 266 EKGIVHSDMWSLDPRTWEWNKVKKSGMPPGPRAGFSMCVHKKRAVLFGGVVDMEVEGDVM 325
Query: 326 MSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDA 385
MSLFLNELYGFQLD HRWYPLELRKEKSTKDK+KKSS++K N + L K+ I+ E+ +
Sbjct: 326 MSLFLNELYGFQLDTHRWYPLELRKEKSTKDKVKKSSDKKYNGATLDNKIGSIDLEKCEE 385
Query: 386 NEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLL 445
N+ D+N E +EEA ++ES+ID +S + ++ V+DG + KS G+P+ES + D+Q S+
Sbjct: 386 NDGDDNLESHEEAADLESSIDEISRHMTTNITVNDGGPSIKSDGRPHESGAQLDLQNSIS 445
Query: 446 PEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASES 505
EIVKPCGRIN MVVGKDTLY+YGGMME+ DZEITLDDLY LNLSKLDEWKCIIPAS+S
Sbjct: 446 SEIVKPCGRINCSMVVGKDTLYIYGGMMEVKDZEITLDDLYCLNLSKLDEWKCIIPASKS 505
Query: 506 EWVEASEGEDEDDDEDDSEDEG-NGGSSSDETGDDDDDDEEDAE----------ARDGDA 554
EW+EASE EDED+DEDDSEDE N GS+SDET DDDD + E A+DG +
Sbjct: 506 EWIEASEEEDEDEDEDDSEDEDCNSGSNSDETDDDDDVERWYLELGETFCVSFNAKDG-S 564
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
SL+MGDAVAIIKGEGKN+RRKEKRARIEQIRANLGLSDSQRTP+PGE+LKDFY+RT++Y
Sbjct: 565 RSLEMGDAVAIIKGEGKNLRRKEKRARIEQIRANLGLSDSQRTPIPGETLKDFYKRTNLY 624
Query: 615 WQMAAHEHTQHTGK 628
WQMAAHEHTQHTGK
Sbjct: 625 WQMAAHEHTQHTGK 638
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540383|ref|XP_002511256.1| kelch repeat protein, putative [Ricinus communis] gi|223550371|gb|EEF51858.1| kelch repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/618 (77%), Positives = 545/618 (88%), Gaps = 6/618 (0%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTAKAEEKRARRETKK+SPEDDIDAILLSIQKEEAKKKEV VE++VPAPSPRSNC+L
Sbjct: 15 TERKTAKAEEKRARRETKKVSPEDDIDAILLSIQKEEAKKKEVLVEESVPAPSPRSNCTL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
NINP K+TELILYGGEFYNGNKT+VYGDLYRYDVEKQEWK +SSPNSPPPRSAHQAV+WK
Sbjct: 75 NINPSKDTELILYGGEFYNGNKTFVYGDLYRYDVEKQEWKRVSSPNSPPPRSAHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NYLYIFGGEFTSPNQERFHHYKDFW+LDLKTNQWEQLN KGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYLYIFGGEFTSPNQERFHHYKDFWVLDLKTNQWEQLNYKGCPSPRSGHRMVLYKHKIIL 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDLY+FDLDQFKWQEIKP+ G+MWPSPRSGFQFFVYQDE+FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLYIFDLDQFKWQEIKPKLGAMWPSPRSGFQFFVYQDEIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKE+S+DK+ S+KGI+HSD+WSLDPRTWEWSKVKK GMPPGPRAGFSMCVHKKRA+LFGG
Sbjct: 255 SKEISSDKSSSDKGIVHSDMWSLDPRTWEWSKVKKSGMPPGPRAGFSMCVHKKRAMLFGG 314
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVDMEM+GDV+MSLFLNELYGFQLDN RWYPLELRKEKSTKDKLKK EQ+ N + +K
Sbjct: 315 VVDMEMEGDVMMSLFLNELYGFQLDNCRWYPLELRKEKSTKDKLKKIPEQRCNGPDV-DK 373
Query: 375 LNPIEAEE---FDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKP 431
++ +E EE F N+ DEN +Y+ EA +ES I+ +S+ + ++ +DDG +K GK
Sbjct: 374 MSVMEMEETAAFPTND-DENQDYHGEAAGIESTINEISQIMKTNMDLDDGSSTSKLDGKA 432
Query: 432 YESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLS 491
SK K +Q S+ E+VKPCGRINSCMVVG+DTLY+YGGMMEI DQEITLDDLYSLNLS
Sbjct: 433 DASKAKMVLQNSVSSEVVKPCGRINSCMVVGRDTLYIYGGMMEIKDQEITLDDLYSLNLS 492
Query: 492 KLDEWKCIIPASESEWV-EASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEAR 550
KLDEW CIIPASESEW+ + + D++DD+ ++ + D+DDDD+EDAEA
Sbjct: 493 KLDEWNCIIPASESEWLEASEDEGDDEDDDSSEDECSCDDDDDETDEDNDDDDDEDAEAG 552
Query: 551 DGDAGSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRR 610
+G + SL++GDAVA+IKG KN+RRKEKRARIEQIRANLGLSDSQRTP+PGESL+DFYRR
Sbjct: 553 NGGSVSLKVGDAVAMIKGGKKNLRRKEKRARIEQIRANLGLSDSQRTPVPGESLRDFYRR 612
Query: 611 TSMYWQMAAHEHTQHTGK 628
T++YWQMAAHEHTQHTGK
Sbjct: 613 TNLYWQMAAHEHTQHTGK 630
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508772|ref|XP_003523128.1| PREDICTED: kelch domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 908 bits (2347), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/614 (75%), Positives = 534/614 (86%), Gaps = 20/614 (3%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTA+AEEK+ARRETKK+SPEDDIDAILLSIQKEEAKKKEVHV+DNVPAPSPRSNCSL
Sbjct: 15 TERKTARAEEKKARRETKKLSPEDDIDAILLSIQKEEAKKKEVHVDDNVPAPSPRSNCSL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
+NPLKETELILYGGEFYNGNKT+VYGDLYRYDVEK EWK++SSPNSPPPRSAHQAV+WK
Sbjct: 75 TVNPLKETELILYGGEFYNGNKTFVYGDLYRYDVEKLEWKLVSSPNSPPPRSAHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NY+YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYVYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIL 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDL+VFDLDQFKWQEIKP+ G+MWP+ RSGFQ FVYQD++FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLFVFDLDQFKWQEIKPKPGAMWPTARSGFQLFVYQDDIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKEVS+DK+ SEKGI+HSD+WSLDP+TWEW+KVKK GMPPGPRAGFSMCVHK+RALLFGG
Sbjct: 255 SKEVSSDKSNSEKGIVHSDMWSLDPKTWEWNKVKKSGMPPGPRAGFSMCVHKRRALLFGG 314
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVD+E++GDV+MSLFLNELYGFQLD +RWYPLELRKEKSTKDKLKK + P+ K
Sbjct: 315 VVDIEVEGDVMMSLFLNELYGFQLDTNRWYPLELRKEKSTKDKLKKIEQNCPDDV---NK 371
Query: 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYES 434
+NP E EE+++ E+NID++S+ + +++ +DDG KS GK ES
Sbjct: 372 INP----------ACTTREETEESEDEENNIDDISKNIASNMSIDDGETLTKSEGKAEES 421
Query: 435 KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
K D+Q SL +VKPCGRIN+CM VG+DTLY+YGGMMEI DQEITLDDLYSLNLSKLD
Sbjct: 422 SAKLDIQSSLPEVVVKPCGRINACMAVGRDTLYIYGGMMEIKDQEITLDDLYSLNLSKLD 481
Query: 495 EWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDA 554
EWKCIIPASESEWVEAS+ ++E++D+D+ E +G+ + DE +E+ E +
Sbjct: 482 EWKCIIPASESEWVEASDDDEENEDDDEDESDGDSLTDEDED-------DEEEEEEEAQN 534
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
S+Q+GDAVA+IKG GKN+RRKE+R RIEQIRA+LGLSDSQRTP PGESLKDFYRRT+MY
Sbjct: 535 ASVQVGDAVALIKGVGKNLRRKERRVRIEQIRASLGLSDSQRTPSPGESLKDFYRRTNMY 594
Query: 615 WQMAAHEHTQHTGK 628
WQMAAHEHTQHTGK
Sbjct: 595 WQMAAHEHTQHTGK 608
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518912|ref|XP_003528120.1| PREDICTED: kelch domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/614 (74%), Positives = 537/614 (87%), Gaps = 21/614 (3%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTA+AEEK+ARRETKK+SPEDDIDAILLSIQKEEAKKK+V V+DNVPAPSPRSNCSL
Sbjct: 15 TERKTARAEEKKARRETKKLSPEDDIDAILLSIQKEEAKKKDVQVDDNVPAPSPRSNCSL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
+NPLKETELILYGGEFYNGNKT+VYGDL+RYDVEK EWK++SSPNSPPPRSAHQAV+WK
Sbjct: 75 TVNPLKETELILYGGEFYNGNKTFVYGDLFRYDVEKLEWKLVSSPNSPPPRSAHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NY+YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYVYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIL 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDL+VFDLDQFKWQEIKP+ +MWP+ RSGFQ FVYQD++FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLFVFDLDQFKWQEIKPKPAAMWPTARSGFQLFVYQDDIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKEVS+DK+ SEKGI+HSD+WSLDP++WEW+KVKK GMPPGPRAGFSMCVHK+RALLFGG
Sbjct: 255 SKEVSSDKSNSEKGIVHSDMWSLDPKSWEWNKVKKSGMPPGPRAGFSMCVHKRRALLFGG 314
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVD+E++ DV+MSLFLNELYGFQLD +RWYPLELRKEKSTKDKLKK + P+ + +K
Sbjct: 315 VVDIEVEVDVMMSLFLNELYGFQLDTNRWYPLELRKEKSTKDKLKKIEQNCPDD--VDKK 372
Query: 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYES 434
+NP A + EE+D+ E++ID +S+ + +++ +DDG KS GKP ES
Sbjct: 373 INPACATREET----------EESDDEENSIDYISKNIASNMSIDDGETLTKSEGKPKES 422
Query: 435 KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
K D+Q S LPE+VKPCGRIN+CM VG+DTLY+YGGMMEI DQEITLDDLYSLNLSKLD
Sbjct: 423 SAKLDLQSS-LPEVVKPCGRINACMAVGRDTLYIYGGMMEIKDQEITLDDLYSLNLSKLD 481
Query: 495 EWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDA 554
EWKCIIPASESEWVEAS+ ++E+DD++D D ++ ++++++ ++A
Sbjct: 482 EWKCIIPASESEWVEASDDDEENDDDEDESDNDGSTDEDEDDEEEEEEEAQNA------- 534
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
S+Q+ DAVA+IKG GKN+RRKE+R+RIEQIRA+LGLSDSQRTP+PGESL+DFYRRT+MY
Sbjct: 535 -SVQVVDAVALIKGVGKNLRRKERRSRIEQIRASLGLSDSQRTPLPGESLRDFYRRTNMY 593
Query: 615 WQMAAHEHTQHTGK 628
WQMAAHEHTQHTGK
Sbjct: 594 WQMAAHEHTQHTGK 607
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440586|ref|XP_004138065.1| PREDICTED: kelch domain-containing protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/604 (76%), Positives = 530/604 (87%), Gaps = 14/604 (2%)
Query: 26 RARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELI 85
RARRE+KK+SPEDDIDAILLSIQKEEAKKKEVHVE+NVPAPSPRSNCSL INPLKETELI
Sbjct: 26 RARRESKKLSPEDDIDAILLSIQKEEAKKKEVHVEENVPAPSPRSNCSLTINPLKETELI 85
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
LYGGEFYNG KTYVYGDLYRYDVEK EWKVISSPNSPPPRSAHQAV+WKNYLYIFGGEFT
Sbjct: 86 LYGGEFYNGTKTYVYGDLYRYDVEKLEWKVISSPNSPPPRSAHQAVAWKNYLYIFGGEFT 145
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
SPNQERFHHYKDFW+LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV
Sbjct: 146 SPNQERFHHYKDFWVLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
Query: 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
RYYND+YVFDLDQ+KWQE+KP G+MWPSPRSGFQFFV+QDEVFLYGGY KE+ +DK S
Sbjct: 206 RYYNDMYVFDLDQYKWQEVKPSPGAMWPSPRSGFQFFVHQDEVFLYGGYFKEIQSDKGTS 265
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMK-GDV 324
E+G++H+D+WSLDPRTW+W+KVKK GMPPGPRAGFSMCVHK+RALLFGGVVDME++ GD
Sbjct: 266 ERGVVHADMWSLDPRTWQWNKVKKGGMPPGPRAGFSMCVHKRRALLFGGVVDMEVEGGDA 325
Query: 325 IMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFD 384
+MSLFLNELY FQ+DNHRWYPLELRKEKS K K+KK S+QK N A + +N E D
Sbjct: 326 MMSLFLNELYAFQIDNHRWYPLELRKEKSIKAKIKKISDQKDNEVAFDDNIN---EEVVD 382
Query: 385 ANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSL 444
+ + +E+ ME++ID +S + +SV +++G L SG K ES S + ++
Sbjct: 383 VGKTE--TPVMDESCSMETDIDEISHHISSSVSINNGGLETSSGKKQQES---SSNKNAV 437
Query: 445 LPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASE 504
LPE++KPCGRINSC+VVG+DTLY+YGGMMEI DQEITLDDLY+LNLSKLDEWKCIIPA+E
Sbjct: 438 LPEVIKPCGRINSCVVVGRDTLYIYGGMMEIKDQEITLDDLYALNLSKLDEWKCIIPATE 497
Query: 505 SEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVA 564
SEWVEASE EDE+DDED+SE++ N S++ G D DEED EA G+ GS ++GDAVA
Sbjct: 498 SEWVEASEDEDEEDDEDESENDDNSEGSNESDG---DSDEEDFEA--GNDGSRKVGDAVA 552
Query: 565 IIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ 624
+IKGEG+N+RRKEKRARIEQIRANLGLSDSQRTPMPGESL++FY+RT++YWQMAAHEHTQ
Sbjct: 553 LIKGEGRNLRRKEKRARIEQIRANLGLSDSQRTPMPGESLREFYKRTNLYWQMAAHEHTQ 612
Query: 625 HTGK 628
HTGK
Sbjct: 613 HTGK 616
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18423130|ref|NP_568723.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|15724228|gb|AAL06507.1|AF412054_1 AT5g50310/MXI22_1 [Arabidopsis thaliana] gi|332008541|gb|AED95924.1| kelch repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/614 (74%), Positives = 530/614 (86%), Gaps = 17/614 (2%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTAKA+EK+ARRE KK+SPEDDIDAILL+IQKEEAKKKEVHVE+NV APSPRSNCSL
Sbjct: 15 TERKTAKADEKKARREGKKLSPEDDIDAILLNIQKEEAKKKEVHVEENVAAPSPRSNCSL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
INPLKETELILYGGEFYNG KTYVYGDLYRYDVEKQEWK++SSPNSPPPRS+HQAV+WK
Sbjct: 75 TINPLKETELILYGGEFYNGQKTYVYGDLYRYDVEKQEWKLVSSPNSPPPRSSHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NYLYIFGGEFTSPNQERFHHYKDFWMLD+KTNQWEQLNLKGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDVKTNQWEQLNLKGCPSPRSGHRMVLYKHKIII 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDLYVFDLDQ+KWQEIKP+ G+MWP+ RSGFQFFVYQDE+FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLYVFDLDQYKWQEIKPKPGAMWPTARSGFQFFVYQDEIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKE + + SEKGI+H+DLWSLDPRTWEW+KVKKIGMPP RAGFS+CVHKKRALLFGG
Sbjct: 255 SKE-VSSEKSSEKGIVHADLWSLDPRTWEWNKVKKIGMPPSSRAGFSVCVHKKRALLFGG 313
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVDMEM+GDV+MSLFLNELYGFQLDN RWYP+ELRKEKS+KDK KK+ E KP +S
Sbjct: 314 VVDMEMEGDVMMSLFLNELYGFQLDNRRWYPIELRKEKSSKDKAKKTLEAKPVASN---- 369
Query: 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYES 434
+E D+ E+DE+ E+ D + S+ D +SE + ++ V DG + KS +
Sbjct: 370 ----NDDEMDSTEEDESLAMIEQTDGVGSS-DGISERMATNLTV-DGNRSDKSKALQ-GA 422
Query: 435 KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
K + D Q S+ E+VKPCGRINSCMVVGKDTLY+YGGMMEI D+E+TLDDLYSLNLSKLD
Sbjct: 423 KTRLDPQVSVSEEVVKPCGRINSCMVVGKDTLYIYGGMMEIKDKEVTLDDLYSLNLSKLD 482
Query: 495 EWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDA 554
EWKCIIP +E+EWVE S+ E+ D+D+D+ + E + DD+DD+E+ EA D D
Sbjct: 483 EWKCIIPTTETEWVEVSDDEEGDEDDDEDDSE----DEGNSEESDDEDDDEEVEAMDVD- 537
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
GS+++G VA+IKG+GK++RRKEKRARIEQIRANLGLSDSQRTP+PGE+LKDFY+RT+MY
Sbjct: 538 GSVKVGVVVAMIKGQGKSLRRKEKRARIEQIRANLGLSDSQRTPVPGETLKDFYKRTNMY 597
Query: 615 WQMAAHEHTQHTGK 628
WQMAA+EHTQHTGK
Sbjct: 598 WQMAAYEHTQHTGK 611
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297792335|ref|XP_002864052.1| kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297309887|gb|EFH40311.1| kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/614 (75%), Positives = 532/614 (86%), Gaps = 18/614 (2%)
Query: 15 TERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSL 74
TERKTAKA+EK+ARRE KK+SPEDDIDAILLSIQKEEAKKKEVHVE+NV APSPRSNCSL
Sbjct: 15 TERKTAKADEKKARREGKKLSPEDDIDAILLSIQKEEAKKKEVHVEENVAAPSPRSNCSL 74
Query: 75 NINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK 134
INPLKETELILYGGEFYNG KTYVYGDLYRYDV+KQEWK ISSPNSPPPRS+HQAV+WK
Sbjct: 75 TINPLKETELILYGGEFYNGQKTYVYGDLYRYDVDKQEWKSISSPNSPPPRSSHQAVAWK 134
Query: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194
NYLYIFGGEFTSPNQERFHHYKDFWMLD+KTNQWEQLNLKGCPSPRSGHRMVLYKHKII+
Sbjct: 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDVKTNQWEQLNLKGCPSPRSGHRMVLYKHKIII 194
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254
FGGFYDTLREVRYYNDLYVFDLDQ+KWQEIKP+ G+MWP+ RSGFQFFVYQDE+FLYGGY
Sbjct: 195 FGGFYDTLREVRYYNDLYVFDLDQYKWQEIKPKPGAMWPTARSGFQFFVYQDEIFLYGGY 254
Query: 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
SKEVS+ + SEKGI+H+DLWSLDPRTWEW+KVKKIGMPP RAGFS+CVHKKRALLFGG
Sbjct: 255 SKEVSS-EKSSEKGIVHADLWSLDPRTWEWNKVKKIGMPPSSRAGFSVCVHKKRALLFGG 313
Query: 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374
VVDMEM+GDV+MSLFLNELYGFQLDN RWYP+ELRKEKSTK K KK+ E KP +S
Sbjct: 314 VVDMEMEGDVMMSLFLNELYGFQLDNRRWYPIELRKEKSTKYKAKKNLEAKPVASN---- 369
Query: 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYES 434
+E D+ E+DE++ E++D + S+ D +S+ + + V DG + KS +
Sbjct: 370 ----NDDEMDSTEEDESSAMIEQSDGVGSS-DGISDRMAAGLTV-DGNRSDKSKALQ-GA 422
Query: 435 KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
K + D Q S+ E++KPCGRINSCMVVGKDTLY+YGGMMEI D+E+TLDDLYSLNLSKLD
Sbjct: 423 KARLDPQVSVSEEVIKPCGRINSCMVVGKDTLYIYGGMMEIKDKEVTLDDLYSLNLSKLD 482
Query: 495 EWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDA 554
EWKCIIPA+E+EWVE SE E+ D+DED+ + E G S + DD+E+ EA D D
Sbjct: 483 EWKCIIPATETEWVEVSEDEEGDEDEDEDDSEDEGNSEESDE-----DDDEEVEAMDVD- 536
Query: 555 GSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPMPGESLKDFYRRTSMY 614
GS+++G+ VA+IKGEGK++RRKEKRARIEQIRANLGLSDSQRTP+PGE+LKDFY+RT+MY
Sbjct: 537 GSVKVGEVVAMIKGEGKSLRRKEKRARIEQIRANLGLSDSQRTPVPGETLKDFYKRTNMY 596
Query: 615 WQMAAHEHTQHTGK 628
WQMAA+EHTQHTGK
Sbjct: 597 WQMAAYEHTQHTGK 610
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38345333|emb|CAE03144.2| OSJNBa0081L15.6 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/630 (68%), Positives = 511/630 (81%), Gaps = 25/630 (3%)
Query: 1 MGKKNKKAGKGKEKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVE 60
MGKK KK KGKEKTERKTAK EEKRARRE +K+ EDDIDAIL SIQKEEAKKKEVH++
Sbjct: 1 MGKKQKKPRKGKEKTERKTAKGEEKRARREARKVGEEDDIDAILRSIQKEEAKKKEVHID 60
Query: 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN 120
+NVPAPSPRSNCSL INPLK+TEL+LYGGEFYNG+KT+VYGDLYRYDVEK EWK++SSPN
Sbjct: 61 ENVPAPSPRSNCSLTINPLKDTELVLYGGEFYNGSKTFVYGDLYRYDVEKNEWKLVSSPN 120
Query: 121 SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180
SPPPRSAHQ V+WKN +Y+FGGEFTSPNQERFHHYKDFW LDLKTNQWEQ+ KGCPS R
Sbjct: 121 SPPPRSAHQTVAWKNNIYMFGGEFTSPNQERFHHYKDFWSLDLKTNQWEQILAKGCPSAR 180
Query: 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240
SGHRMVLYKHKI++FGGFYDTLREVRYYNDL+VFDLD FKW+EIKPR G +WPSPRSGFQ
Sbjct: 181 SGHRMVLYKHKIVLFGGFYDTLREVRYYNDLHVFDLDNFKWEEIKPRPGCLWPSPRSGFQ 240
Query: 241 FFVYQDEVFLYGGYSKE-VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299
VYQD+++LYGGY KE VS+DK+ SEKG +H+D+W+LDPRTWEW+KVKK GMPPGPRAG
Sbjct: 241 LMVYQDQIYLYGGYFKEVVSSDKSASEKGTVHADMWTLDPRTWEWNKVKKTGMPPGPRAG 300
Query: 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLK 359
FSMCVHKKRA+LFGGVVDME++GDVIMS+F+NELYGFQLDNHRWYPLELRK+K K+K K
Sbjct: 301 FSMCVHKKRAVLFGGVVDMEIEGDVIMSMFMNELYGFQLDNHRWYPLELRKDKPAKNKTK 360
Query: 360 KSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVD 419
++P+++ E+ NE+DE E E +S + +S + S+ ++
Sbjct: 361 DIKRKEPSNN----------VEDNLGNEEDEIMEDSETTGG-QSEVHGVSNHLTKSLTLN 409
Query: 420 DGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQE 479
K+G + +LPE VKP GRIN+C+ VGKDTLY+YGGMME+ D+E
Sbjct: 410 ------KAGSGNSSDILSDSTTQEVLPEAVKPGGRINACLAVGKDTLYLYGGMMELKDRE 463
Query: 480 ITLDDLYSLNLSKLDEWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDD 539
ITLDD+YSLNLSKLDEWKCIIPASESEW+E SE ED++DD+DD + + ++ DD
Sbjct: 464 ITLDDMYSLNLSKLDEWKCIIPASESEWLEISEDEDDEDDDDDDNENDSEDDANQTDEDD 523
Query: 540 DDDDEEDAEARDGDAGSLQMGDAVAIIKGEGKNVRRKEKRARIEQIRANLGLSDSQRTPM 599
++ DE+ + D M AV++IKGE KN+RRKEKRARIEQIR LGLSDSQRTPM
Sbjct: 524 EESDEDAEKNVD-------MSTAVSLIKGERKNLRRKEKRARIEQIRVMLGLSDSQRTPM 576
Query: 600 PGESLKDFYRRTSMYWQMAAHEHTQHTGKV 629
PGESLKDFY+RT MYWQMAA+EHTQHTGKV
Sbjct: 577 PGESLKDFYKRTDMYWQMAAYEHTQHTGKV 606
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 647 | ||||||
| TAIR|locus:2177542 | 666 | AT5G50310 [Arabidopsis thalian | 0.714 | 0.693 | 0.722 | 2e-221 | |
| MGI|MGI:2384569 | 584 | Klhdc4 "kelch domain containin | 0.472 | 0.523 | 0.408 | 2.8e-82 | |
| ASPGD|ASPL0000047740 | 677 | AN2090 [Emericella nidulans (t | 0.370 | 0.354 | 0.378 | 1.9e-77 | |
| CGD|CAL0001573 | 638 | orf19.5009 [Candida albicans ( | 0.525 | 0.532 | 0.370 | 1.6e-70 | |
| UNIPROTKB|Q5AKW8 | 638 | KEL3 "Putative uncharacterized | 0.525 | 0.532 | 0.370 | 1.6e-70 | |
| SGD|S000006184 | 651 | KEL3 "Cytoplasmic protein of u | 0.670 | 0.666 | 0.307 | 1.6e-54 | |
| POMBASE|SPCC1223.06 | 1147 | tea1 "cell end marker Tea1" [S | 0.364 | 0.205 | 0.286 | 6.4e-18 | |
| DICTYBASE|DDB_G0268860 | 943 | rngB "Kelch repeat-containing | 0.352 | 0.241 | 0.261 | 4.5e-17 | |
| DICTYBASE|DDB_G0293006 | 1127 | gefF "Ras guanine nucleotide e | 0.321 | 0.184 | 0.262 | 4.6e-16 | |
| TAIR|locus:2014400 | 341 | ESP "epithiospecifier protein" | 0.408 | 0.774 | 0.266 | 7.7e-16 |
| TAIR|locus:2177542 AT5G50310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1843 (653.8 bits), Expect = 2.0e-221, Sum P(2) = 2.0e-221
Identities = 344/476 (72%), Positives = 390/476 (81%)
Query: 34 ISPEDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPLKETELILYGGEFYN 93
+SPEDDIDAILL+IQ +NV APSPRSNCSL INPLKETELILYGGEFYN
Sbjct: 34 LSPEDDIDAILLNIQKEEAKKKEVHVEENVAAPSPRSNCSLTINPLKETELILYGGEFYN 93
Query: 94 GNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFH 153
G KTYVYGDLYRYDVEKQEWK++SSPNSPPPRS+HQAV+WKNYLYIFGGEFTSPNQERFH
Sbjct: 94 GQKTYVYGDLYRYDVEKQEWKLVSSPNSPPPRSSHQAVAWKNYLYIFGGEFTSPNQERFH 153
Query: 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213
HYKDFWMLD+KTNQWEQLNLKGCPSPRSGHRMVLYKHKII+FGGFYDTLREVRYYNDLYV
Sbjct: 154 HYKDFWMLDVKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIIFGGFYDTLREVRYYNDLYV 213
Query: 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSD 273
FDLDQ+KWQEIKP+ G+MWP+ RSGFQFFVYQDE+FLYGGYSKEVS++K+ SEKGI+H+D
Sbjct: 214 FDLDQYKWQEIKPKPGAMWPTARSGFQFFVYQDEIFLYGGYSKEVSSEKS-SEKGIVHAD 272
Query: 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNEL 333
LWSLDPRTWEW+KVKKIGMPP RAGFS+CVHKKRALLFGGVVDMEM+GDV+MSLFLNEL
Sbjct: 273 LWSLDPRTWEWNKVKKIGMPPSSRAGFSVCVHKKRALLFGGVVDMEMEGDVMMSLFLNEL 332
Query: 334 YGFQLDNHRWYPLELRXXXXXXXXXXXXXEQKPNSSALHEKLNPIEAEEFDAXXXXXXXX 393
YGFQLDN RWYP+ELR E KP +S ++++ E +E
Sbjct: 333 YGFQLDNRRWYPIELRKEKSSKDKAKKTLEAKPVASNNDDEMDSTEEDE---------SL 383
Query: 394 XXXXXXXXXSNIDNLSECVPNSVIVDDGVLAAKSGGKPYE-SKKKSDMQKSLLPEIVKPC 452
+ D +SE + ++ VD G + KS K + +K + D Q S+ E+VKPC
Sbjct: 384 AMIEQTDGVGSSDGISERMATNLTVD-GNRSDKS--KALQGAKTRLDPQVSVSEEVVKPC 440
Query: 453 GRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASESEWV 508
GRINSCMVVGKDTLY+YGGMMEI D+E+TLDDLYSLNLSKLDEWKCIIP +E+EWV
Sbjct: 441 GRINSCMVVGKDTLYIYGGMMEIKDKEVTLDDLYSLNLSKLDEWKCIIPTTETEWV 496
|
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| MGI|MGI:2384569 Klhdc4 "kelch domain containing 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 2.8e-82, Sum P(3) = 2.8e-82
Identities = 132/323 (40%), Positives = 192/323 (59%)
Query: 37 EDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNK 96
E+D++A++ Q P PSPR N SL+ +P K+ ELIL+GGE++NG K
Sbjct: 33 EEDLEALIAHFQTLDAKKTQVTETP-CPPPSPRLNASLSAHPEKD-ELILFGGEYFNGQK 90
Query: 97 TYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV---SWKNYLYIFGGEFTSPNQERFH 153
T++Y +LY Y + K W + P PP R AHQAV L++FGGEF SP+ E+F+
Sbjct: 91 TFMYNELYIYSIRKDTWTKVDIPGPPPRRCAHQAVVVPQGGGQLWVFGGEFASPDGEQFY 150
Query: 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213
HYKD W+L L T WEQ+ G PS RSGHRMV +K ++I+FGGF+++ R+ YY+D+Y
Sbjct: 151 HYKDLWVLHLATKTWEQIRSTGGPSGRSGHRMVAWKRQLILFGGFHESARDYIYYSDVYT 210
Query: 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHS 272
F LD F+W ++ P G+ P+PRSG V Q + +YGGYSK+ K +KG HS
Sbjct: 211 FSLDTFQWSKLSPS-GA-GPTPRSGCLMAVTPQGSIAIYGGYSKQ--RVKKDVDKGTQHS 266
Query: 273 DLWSLDPRT-----WEWSKVKKIGMPPGPRAGFSMCVHKKRALL-FGGVVDMEMKGDVIM 326
D++ L P W W+++ G+ P R+GFS+ V +L FGGV D E + + +
Sbjct: 267 DMFLLKPAEGGEGKWAWTRINPSGVKPTARSGFSVAVAPNHQILVFGGVCDEEEE-ESLE 325
Query: 327 SLFLNELYGFQLDNHRWYPLELR 349
F ++LY + RW+ +L+
Sbjct: 326 GSFFSDLYIYDAAKSRWFAAQLK 348
|
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| ASPGD|ASPL0000047740 AN2090 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 1.9e-77, Sum P(4) = 1.9e-77
Identities = 97/256 (37%), Positives = 143/256 (55%)
Query: 37 ED-DIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGN 95
ED D+DAIL + P PSPRS+ ++ +P EL+++GGE+++G
Sbjct: 42 EDADLDAILAQYAEEQARFLKVTEVVSGP-PSPRSSATVLASPSNRNELLIFGGEYFDGT 100
Query: 96 KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNY--LYIFGGEFTSPNQERFH 153
Y +L+ Y +++ EW+ ++SPNSP PRS H N +Y+FGGEF+SP Q F+
Sbjct: 101 LATFYNNLFVYLIDRGEWREVTSPNSPLPRSGHAWCRGGNTGGIYLFGGEFSSPKQGTFY 160
Query: 154 HYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212
HY DFW LD T +W ++ KG P RSGHRM +K+ II+FGGF DT ++ +Y DL+
Sbjct: 161 HYNDFWHLDPSTREWSRIETKGKGPPARSGHRMTYFKNYIILFGGFQDTSQQTKYLQDLW 220
Query: 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK-EVSTDKN-QSEKG-- 268
++D ++ W S P PRS F ++ LYGGYS+ +V+ +S KG
Sbjct: 221 IYDCSKYTWYNPVLSTASQKPDPRSSSSFLPHESGAVLYGGYSRVKVTAGAGGKSAKGGP 280
Query: 269 -------IIHSDLWSL 277
++H D W L
Sbjct: 281 QRMTMKPMVHQDTWFL 296
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| CGD|CAL0001573 orf19.5009 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 1.6e-70, Sum P(3) = 1.6e-70
Identities = 130/351 (37%), Positives = 190/351 (54%)
Query: 37 EDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPL-KETELILYGGEFYNGN 95
+DDIDAIL P+ R N ++ NPL + ELIL+GGE +G
Sbjct: 46 DDDIDAILEKYAKEQLEFTEIKIEICDHHPTKRLNPTMVSNPLHNKRELILFGGENTDGG 105
Query: 96 KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGGEFTSPNQERFHH 154
+ Y DLY Y ++ W+ ISS NSP PRS+H S + + +FGGEF+SP Q F+H
Sbjct: 106 HSKFYNDLYTYSIDNDTWRKISSKNSPLPRSSHAMCSHPSGIILMFGGEFSSPKQSTFYH 165
Query: 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214
Y D W+LD T +W++++ K PS RSGHR+ ++K+ II+ GGF D Y ND+++F
Sbjct: 166 YGDTWILDADTKEWQKIDSKKGPSARSGHRLAVWKNYIILHGGFRDLGTMTTYLNDVWLF 225
Query: 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
D+ +FKW +++ P RSG + +YGGY+K + K +KG + +D
Sbjct: 226 DVTEFKWTQVEFPPNHPIPDARSGHSLLPCSEGAVIYGGYTK-IKAKKGL-QKGKVLNDC 283
Query: 275 WSL----DPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFL 330
W L DP+ + + KK G P PR G S+ HK R +LFGGV D E + + S F
Sbjct: 284 WILKMKSDPKAVRFERRKKQGTLPSPRVGCSLVYHKNRGMLFGGVYDFEESEENLDSEFY 343
Query: 331 NELYGFQLDNHRWYPLELRXXXXXXXXXXXXXEQKPNSSALHEKLNPIEAE 381
N+LY + ++++RWY L L+ ++K L E LN I A+
Sbjct: 344 NQLYTYHIESNRWYNLHLKPQRKKKKETI---KEKTRDEDLEEILNSILAK 391
|
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| UNIPROTKB|Q5AKW8 KEL3 "Putative uncharacterized protein KEL3" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 1.6e-70, Sum P(3) = 1.6e-70
Identities = 130/351 (37%), Positives = 190/351 (54%)
Query: 37 EDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPL-KETELILYGGEFYNGN 95
+DDIDAIL P+ R N ++ NPL + ELIL+GGE +G
Sbjct: 46 DDDIDAILEKYAKEQLEFTEIKIEICDHHPTKRLNPTMVSNPLHNKRELILFGGENTDGG 105
Query: 96 KTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGGEFTSPNQERFHH 154
+ Y DLY Y ++ W+ ISS NSP PRS+H S + + +FGGEF+SP Q F+H
Sbjct: 106 HSKFYNDLYTYSIDNDTWRKISSKNSPLPRSSHAMCSHPSGIILMFGGEFSSPKQSTFYH 165
Query: 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214
Y D W+LD T +W++++ K PS RSGHR+ ++K+ II+ GGF D Y ND+++F
Sbjct: 166 YGDTWILDADTKEWQKIDSKKGPSARSGHRLAVWKNYIILHGGFRDLGTMTTYLNDVWLF 225
Query: 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
D+ +FKW +++ P RSG + +YGGY+K + K +KG + +D
Sbjct: 226 DVTEFKWTQVEFPPNHPIPDARSGHSLLPCSEGAVIYGGYTK-IKAKKGL-QKGKVLNDC 283
Query: 275 WSL----DPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFL 330
W L DP+ + + KK G P PR G S+ HK R +LFGGV D E + + S F
Sbjct: 284 WILKMKSDPKAVRFERRKKQGTLPSPRVGCSLVYHKNRGMLFGGVYDFEESEENLDSEFY 343
Query: 331 NELYGFQLDNHRWYPLELRXXXXXXXXXXXXXEQKPNSSALHEKLNPIEAE 381
N+LY + ++++RWY L L+ ++K L E LN I A+
Sbjct: 344 NQLYTYHIESNRWYNLHLKPQRKKKKETI---KEKTRDEDLEEILNSILAK 391
|
|
| SGD|S000006184 KEL3 "Cytoplasmic protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 145/471 (30%), Positives = 227/471 (48%)
Query: 37 EDDIDAILLSIQXXXXXXXXXXXXDNVPAPSPRSNCSLNINPL-KETELILYGGEFYNGN 95
+ D+D IL S +V PS R++ + NP + EL ++GGEF +
Sbjct: 48 DQDLDEILSSFSKKQIELEHVDIT-SVEKPSCRTHPLMFANPQHNKHELFIFGGEFTDPE 106
Query: 96 K--TYVYGDLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSWKNYLYIFGGEFTSPNQERF 152
T+ Y DLY Y ++ WK S N+P PRS A AV + GGEF+SP Q +F
Sbjct: 107 TKLTHFYNDLYSYSIKNNSWKKYVSQNAPLPRSSAAVAVHPSGIALLHGGEFSSPKQSKF 166
Query: 153 HHYKDFWMLDLKTNQWEQLNLKG---CPSPRSGHRMVLYKHKIIVFGGFYDTLR-EVRYY 208
+HY D W+ D ++ +L G PS RSGHR++ +K+ I+FGGF D + Y
Sbjct: 167 YHYSDTWLFDCVERKFTKLEFGGRDSSPSARSGHRIIAWKNYFILFGGFRDLGNGQTSYL 226
Query: 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKG 268
NDL+ FD+ +KW +++ + P RSG F + L GGY K ++ + KG
Sbjct: 227 NDLWCFDISTYKWTKLET---NSKPDARSGHCFIPTDNSAILMGGYCKIIAKNNKNLMKG 283
Query: 269 IIHSDLWSL----DPRTWEWSKVKKIGMPPGPRAGFSMCVHKK-RALLFGGVVDMEMKGD 323
I +D W L DP+ W+W K+K P PR G+S + K+ +++ FGGV D++ +
Sbjct: 284 KILNDAWKLNLTPDPKKWQWEKLKNFKNQPSPRVGYSFNLWKQNKSVAFGGVYDLQETEE 343
Query: 324 VIMSLFLNELYGFQLDNHRWYPLELRXXXXXXXXXXXXXEQKPNSSALHEKLNPIEAEEF 383
+ S+F N+LY F L+ ++W L ++ + P +S K N + +E
Sbjct: 344 SLESVFYNDLYMFHLELNKWSKLRIKPQRQTNS------KNSPATSK--RKSNKDQEKEL 395
Query: 384 DAXXXXXXXXXXXXXXXXXSNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKS 443
N DN S PNS+ DD + E D Q+
Sbjct: 396 Q-DLLNSILAKSNLNDDDDDNDDN-STTGPNSI--DDD--------EDNEDDSDLDNQED 443
Query: 444 LLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLD 494
+ P R N+ V D+L++Y G+ E+ +++ ++ YS++L+KLD
Sbjct: 444 ITISNQLPHPRFNAATCVVGDSLFIYSGVWELGEKDYPINSFYSIDLNKLD 494
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| POMBASE|SPCC1223.06 tea1 "cell end marker Tea1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 6.4e-18, P = 6.4e-18
Identities = 77/269 (28%), Positives = 125/269 (46%)
Query: 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISS-PNSPPPRSAHQAVSWKNYLYIFG 141
E+ ++GG + + DL+ ++ ++ + S +P PR H ++ N +FG
Sbjct: 94 EIYIFGGV---ASDSQPKNDLWVLNLATSQFTSLRSLGETPSPRLGHASILIGNAFIVFG 150
Query: 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYD 200
G +R + ++L+ + W++ N G PS R GH + KI +FGG
Sbjct: 151 GLTNHDVADRQDN--SLYLLNTSSLVWQKANASGARPSGRYGHTISCLGSKICLFGG--- 205
Query: 201 TLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW--PSP-RSGFQFFVYQDEVFLYGGYSKE 257
L + Y+NDL FDL+ + + S+ P P R+G F + D+++++GG
Sbjct: 206 RLLDY-YFNDLVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTFSDKLYIFGG---- 260
Query: 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317
TD +DLW P+ WSKV+ G+ P PRAG + V + +FGG
Sbjct: 261 --TDGAN-----FFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAASVVEGILYVFGG--- 310
Query: 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
D FLN+LY F+L + WY L
Sbjct: 311 --RASD---GTFLNDLYAFRLSSKHWYKL 334
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| DICTYBASE|DDB_G0268860 rngB "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 69/264 (26%), Positives = 128/264 (48%)
Query: 92 YNGNKTYVYGDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTS---P 147
+ GN + D+ Y++ W K+ + N+P R H AV +++ + +
Sbjct: 34 FGGNSNRAFNDIQYYNIFNNSWSKIEAVGNAPSERYGHSAVLYQSQSRPYSDSYQIIFFG 93
Query: 148 NQERFHHYKDFWMLDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204
+ + D +L + +N+ W+Q+ K R+GH V+Y+ ++VFGG + +
Sbjct: 94 GRATSKPFSDINILYVNSNRSFIWKQVTTKSIEG-RAGHTAVVYRQNLVVFGGHNN--HK 150
Query: 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFF-VYQDEVFLYGGYSKEVSTDKN 263
+YYN + +F L+ +W++ G + PS R+ F V +++F++GGY
Sbjct: 151 SKYYNSVLLFSLESNEWRQ--QVCGGVIPSARATHSTFQVNNNKMFIFGGYD-------- 200
Query: 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC-VHKKRALLFGGVVDMEMKG 322
+K ++D++ LD TW W KV+ G PP PR+G S + + ++FGG
Sbjct: 201 -GKK--YYNDIYYLDLETWIWKKVEAKGTPPKPRSGHSATMIQNNKLMIFGGC-----GS 252
Query: 323 DVIMSLFLNELYGFQLDN---HRW 343
D S FLN+++ ++ +RW
Sbjct: 253 D---SNFLNDIHILHIEGANEYRW 273
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| DICTYBASE|DDB_G0293006 gefF "Ras guanine nucleotide exchange factor" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 61/232 (26%), Positives = 111/232 (47%)
Query: 86 LYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
L+GG +G+ T D Y + + W +++ ++P R+ H V + N +YIFGG
Sbjct: 215 LFGGTLPDGSYT---NDFYTFQFAIKAWTILTFGSAPSIRTRHTGVLYNNSMYIFGGY-- 269
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFY--DTL 202
SP+ + D ++ T W ++ +G PSPR GH V+ +IVFGG T
Sbjct: 270 SPSGPK----NDIYVFSFDTQTWSEVQTEGTKPSPRYGHTAVVESGHMIVFGGISCDQTT 325
Query: 203 REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262
++ ND++ +LD +W ++ + PSPR+ +++ ++++GG ++
Sbjct: 326 KQQTVNNDIFSLNLDTKQWSQV---LSTCPPSPRTHHTATMHKGNMYVFGGQDQQ----S 378
Query: 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
NQ E I+H W+ + W ++ G PR+ S + + + GG
Sbjct: 379 NQVED-IVHCYTWASN----SWKSIQFEGSSMTPRSDHSAVLFQDSIFISGG 425
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| TAIR|locus:2014400 ESP "epithiospecifier protein" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 7.7e-16, Sum P(2) = 7.7e-16
Identities = 77/289 (26%), Positives = 125/289 (43%)
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
P PRS S I + + +L +GGE NK ++ DLY +D Q W + P
Sbjct: 20 PGPRS--SHGIAAVGD-KLYSFGGEL-TPNK-HIDKDLYVFDFNTQTWSIAQPKGDAPTV 74
Query: 126 SAH--QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE---QLNLKGCPSPR 180
S + V+ +YIFGG + N E F Y D T++W +L+ G P R
Sbjct: 75 SCLGVRMVAVGTKIYIFGGRDENRNFENFRSY------DTVTSEWTFLTKLDEVGGPEAR 128
Query: 181 SGHRMVLYKHKIIVFGGFYD--TLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
+ H M ++ + VFGG T+ + + +++ KW ++ P G + R G
Sbjct: 129 TFHSMASDENHVYVFGGVSKGGTMNTPTRFRTIEAYNIADGKWAQL-PDPGDNFEK-RGG 186
Query: 239 FQFFVYQDEVFL-YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297
F V Q ++++ YG + V K+ E + DP + +W++V+ G P R
Sbjct: 187 AGFAVVQGKIWVVYGFATSIVPGGKDDYESNAVQF----YDPASKKWTEVETTGAKPSAR 242
Query: 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
+ F+ V K ++F G V ++ G NE Y + W L
Sbjct: 243 SVFAHAVVGKYIIIFAGEVWPDLNGHYGPGTLSNEGYALDTETLVWEKL 291
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.XV.1950.1 | SubName- Full=Putative uncharacterized protein; (679 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00640202 | hypothetical protein (1181 aa) | • | 0.497 | |||||||
 | estExt_Genewise1_v1.C_LG_VII2715 | hypothetical protein (380 aa) | • | 0.491 | |||||||
 | gw1.86.17.1 | hypothetical protein (573 aa) | • | 0.478 | |||||||
 | gw1.I.4832.1 | hypothetical protein (422 aa) | • | 0.474 | |||||||
 | estExt_fgenesh4_pg.C_LG_XV0629 | hypothetical protein (314 aa) | • | 0.460 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 647 | |||
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 7e-17 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 2e-15 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 1e-11 | |
| pfam13422 | 99 | pfam13422, DUF4110, Domain of unknown function (DU | 3e-11 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 5e-09 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 1e-08 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 6e-08 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 2e-06 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 2e-06 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 3e-06 | |
| pfam02724 | 583 | pfam02724, CDC45, CDC45-like protein | 5e-06 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 1e-05 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 1e-05 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 2e-05 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 3e-05 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 5e-05 | |
| TIGR03548 | 323 | TIGR03548, mutarot_permut, cyclically-permuted mut | 5e-05 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 5e-05 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 8e-05 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 1e-04 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 1e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 2e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 2e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 2e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 3e-04 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 3e-04 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 3e-04 | |
| pfam05327 | 554 | pfam05327, RRN3, RNA polymerase I specific transcr | 8e-04 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 9e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 0.001 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 0.001 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 0.001 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 0.001 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 0.002 | |
| pfam06213 | 282 | pfam06213, CobT, Cobalamin biosynthesis protein Co | 0.002 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 0.003 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 0.003 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 0.003 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 7e-17
Identities = 76/287 (26%), Positives = 132/287 (45%), Gaps = 27/287 (9%)
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
P PR CS I + + +L +GGE N+ ++ DLY +D W I+ N PR
Sbjct: 20 PGPR--CSHGIAVVGD-KLYSFGGEL-KPNE-HIDKDLYVFDFNTHTWS-IAPANGDVPR 73
Query: 126 SAH---QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE---QLNLKGCPSP 179
+ + V+ LYIFGG +++R + DF+ D N+W +L+ +G P
Sbjct: 74 ISCLGVRMVAVGTKLYIFGGR----DEKR--EFSDFYSYDTVKNEWTFLTKLDEEGGPEA 127
Query: 180 RSGHRMVLYKHKIIVFGGFYD--TLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237
R+ H M ++ + VFGG ++ + + +++ KW ++ P G + R
Sbjct: 128 RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQL-PDPGENF-EKRG 185
Query: 238 GFQFFVYQDEVFL-YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP 296
G F V Q ++++ YG + + K+ E + DP + +W++V+ G P
Sbjct: 186 GAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQF----FDPASGKWTEVETTGAKPSA 241
Query: 297 RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343
R+ F+ V K ++FGG V ++KG + NE Y + W
Sbjct: 242 RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288
|
Length = 341 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 2e-15
Identities = 73/273 (26%), Positives = 115/273 (42%), Gaps = 32/273 (11%)
Query: 55 KEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK 114
K + VE P R CS I + ++ +GGEF + LY +D+E + W
Sbjct: 152 KWIKVEQKGEGPGLR--CSHGIAQVG-NKIYSFGGEFTPNQP--IDKHLYVFDLETRTWS 206
Query: 115 VISSPNSPPPRS--AHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN 172
+ + P S + VS + LY+FGG S Y F+ D TN+W+ L
Sbjct: 207 ISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS------RQYNGFYSFDTTTNEWKLLT 260
Query: 173 -LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231
++ P+PRS H M + + VFGG T R L +++ KW S
Sbjct: 261 PVEEGPTPRSFHSMAADEENVYVFGGVSATAR----LKTLDSYNIVDKKWFHCSTPGDSF 316
Query: 232 WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291
S R G V Q +V++ G++ G D+ DP +W++V+ G
Sbjct: 317 --SIRGGAGLEVVQGKVWVVYGFN------------GCEVDDVHYYDPVQDKWTQVETFG 362
Query: 292 MPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDV 324
+ P R+ F+ K ++FGG + M+ V
Sbjct: 363 VRPSERSVFASAAVGKHIVIFGGEIAMDPLAHV 395
|
Length = 470 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 66/247 (26%), Positives = 102/247 (41%), Gaps = 36/247 (14%)
Query: 94 GNKTYVYG---------DLYRYDVEKQEWKVISSPN---SPPPRSAHQAVSWKNYLYIFG 141
G K Y++G D Y YD K EW ++ + P R+ H S +N++Y+FG
Sbjct: 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFG 144
Query: 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP------RSGHRMVLYKHKIIVF 195
G + ++ ++ +W QL P P R G + + KI V
Sbjct: 145 GVSKGGLMKTPERFRTIEAYNIADGKWVQL-----PDPGENFEKRGGAGFAVVQGKIWVV 199
Query: 196 GGFYDTL----REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLY 251
GF ++ + N + FD KW E++ PS RS F V + ++
Sbjct: 200 YGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAK--PSARSVFAHAVVGKYIIIF 257
Query: 252 GGYSKEVSTD-KNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR---AGFSMCVHKK 307
GG EV D K G + ++ ++LD T W K+ + G P PR A + V+ K
Sbjct: 258 GG---EVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGK 314
Query: 308 RALLFGG 314
LL G
Sbjct: 315 NGLLMHG 321
|
Length = 341 |
| >gnl|CDD|222117 pfam13422, DUF4110, Domain of unknown function (DUF4110) | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-11
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 587 ANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ---HTGK 628
GL DS TP P ESL+DF+ RTS YWQ A E + +GK
Sbjct: 1 EQPGLDDSLPTPRPFESLRDFFARTSAYWQEIAMESLRDAELSGK 45
|
This is a family that is found predominantly at the C-terminus of Kelch-containing proteins. However, the exact function of this region is not known. Length = 99 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-09
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY 188
+Y+FGG R D W+ DL TN WE+ L P PR+GH +
Sbjct: 1 GGKIYVFGGL--GDGGTR---LNDLWVYDLDTNTWEK--LGDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-08
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 177 PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219
P PR+ H V+ +I ++GG+ T + +D+YV L F
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGY--TSGNGQSSDDVYVLSLPGF 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-08
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 122 PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN 166
P PR+ H AV +Y++GG +TS N + D ++L L
Sbjct: 2 PVPRANHCAVVVGGEIYLYGG-YTSGNGQ---SSDDVYVLSLPGF 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-06
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY 244
KI VFGG D NDL+V+DLD W+++ P PR+G V
Sbjct: 1 GGKIYVFGGLGDG---GTRLNDLWVYDLDTNTWEKLGD-----LPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-06
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 124 PRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL 171
PR+ H + S LY+FGGE D W+ DL TN W +L
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENED-----GSVLSDVWVFDLSTNTWTRL 44
|
Length = 49 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 59/289 (20%), Positives = 104/289 (35%), Gaps = 58/289 (20%)
Query: 84 LILYGGEFYNGNK--TYVYGDLYRYDVEKQEWKVISSPNSPPPRS--AHQAVSWKN-YLY 138
L ++GG ++ V+ D+YRYD +K W+ + ++ P S N Y
Sbjct: 66 LYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKL---DTRSPVGLLGASGFSLHNGQAY 122
Query: 139 IFGG-----------------EFTSPNQERFHHY-----------KDFWMLDLKTNQWEQ 170
GG + + P + Y K+ D TNQW
Sbjct: 123 FTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWR- 181
Query: 171 LNLKGCP-SPRSGHRMVLYKHKIIVFGG-FYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228
NL P +G +V +K+++ G LR Y+F + +W ++ P
Sbjct: 182 -NLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVK--QYLFTGGKLEWNKLPPLP 238
Query: 229 GSMWPSPR--SGFQFFVYQDEVFLYGGYS-----KEVSTDKNQSEKGII---HSDLWSLD 278
S +G + + + GG + + K + +G+I S++++LD
Sbjct: 239 PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD 298
Query: 279 PRTWEWSKVKKIGMPPGPRA-GFSMCVHKKRALLFGGVVDMEMKGDVIM 326
W K+G P A G S+ + L+ G + DV +
Sbjct: 299 NGKW-----SKVGKLPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYL 342
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 476 NDQEITLDDLYSLNLSKLDEWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDE 535
+DQ + DD ++E P + + E +D+DD+E D EDE + S DE
Sbjct: 95 SDQVVIFDD------GDIEEELQDEPRYDDAY-RDLEEDDDDDEESDEEDEESSKSEDDE 147
Query: 536 TGDDDDDDEEDAEARDGDAGSLQMGDAVAIIKGEGKNVRRKEKRARIEQ 584
DDDDDD++ A + +EKRA +E
Sbjct: 148 DDDDDDDDDDIATRERSLERRRRR-------------REWEEKRAELEF 183
|
CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-05
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS 132
++ ++GG T DL+ YD++ W+ + P PR+ H A
Sbjct: 3 KIYVFGG--LGDGGTR-LNDLWVYDLDTNTWEKLGDL--PGPRAGHAATV 47
|
Length = 48 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-05
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305
+++++GG + G +DLW D T W +K+G PGPRAG + V
Sbjct: 2 GKIYVFGGLG----------DGGTRLNDLWVYDLDTNTW---EKLGDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-05
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL 171
PR+ H AVS +Y+FGG + D +T WE+L
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSK-----ASNKVLVYDPETGSWEKL 43
|
Length = 50 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-05
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 451 PCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNL 490
P R N C VV +Y+YGG + + DD+Y L+L
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGY--TSGNGQSSDDVYVLSL 39
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 47/193 (24%)
Query: 156 KDFWMLDLK--TNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGF--YDTLREVRYYND 210
++ LDLK + W+++ + G P R+ K+ VFGG ++ + ++D
Sbjct: 29 TSWYKLDLKKPSKGWQKIADFPGGP--RNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDD 86
Query: 211 LYVFDLDQFKWQEIKPRFGSMWPSPR-----SGFQFFVYQDEVFLYGGYSKE-------- 257
+Y +D + WQ++ SP SGF ++ + + GG +K
Sbjct: 87 VYRYDPKKNSWQKL------DTRSPVGLLGASGFS--LHNGQAYFTGGVNKNIFDGYFAD 138
Query: 258 -VSTDKNQS-EKGIIHS-------------DLWSLDPRTWEWSKVKKIGMPPG-PRAGFS 301
+ DK+ + +I + ++ S DP T +W + G P AG +
Sbjct: 139 LSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL---GENPFLGTAGSA 195
Query: 302 MCVHKKRALLFGG 314
+ + LL G
Sbjct: 196 IVHKGNKLLLING 208
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 61/282 (21%), Positives = 104/282 (36%), Gaps = 48/282 (17%)
Query: 83 ELILYGGEFY------NGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNY 136
+++ GG + G K Y +Y D E K + + P + ++S +N
Sbjct: 15 RILVAGGCNFPEKPVAEGGKKKYYKGIYTLDDEDSNLKWVKAGQLPYAAAYGASISTENG 74
Query: 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMV-LYKHKIIV 194
+Y GG S + E F + + L E L ++ PS P + YK +
Sbjct: 75 IYYIGG---SNSSESF---SSVYRITLD-ESKEALIIETLPSLPFAMDNGSATYKDGKLY 127
Query: 195 FGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP-SPRSGFQFFVYQDEVFLYGG 253
GG + N Y F+L+ +W+E P F P +PR Q+E++++GG
Sbjct: 128 VGG---GNANGKPSNKFYCFNLETQEWEE-LPDF----PGAPRVQPVCVKLQNELYVFGG 179
Query: 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA---GFSMCVHKKRAL 310
TD + P+T W KV P + S+ +++ L
Sbjct: 180 GDNIAYTDG------------YKYSPKTGTWEKVADPLSDGEPISLLGAASIAINESLLL 227
Query: 311 LFGG---------VVDMEMKGDVIMSLFLNELYGFQLDNHRW 343
GG V+ + D + + E + D +RW
Sbjct: 228 CIGGFNYDVFNDAVIRLATMKDESLKSYAAEYFLHPPDWYRW 269
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 28/199 (14%)
Query: 92 YNGNKTYV----YGDLYRYDVEKQEWKVISS-----PNSPPPRSAHQAVSWKNYLYIFGG 142
N+ YV Y + VE WK S P PR V+ N +Y+ GG
Sbjct: 340 VFNNRIYVIGGIYNSISLNTVES--WKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGG 397
Query: 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGF-YDT 201
+ K L TN+W + + P G + + KI V GG Y
Sbjct: 398 IS-----KNDELLKTVECFSLNTNKWSKGS--PLPISHYGGCAIYHDGKIYVIGGISYID 450
Query: 202 LREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTD 261
+V YN + ++ KW E+ S PR ++ +++++ GG E
Sbjct: 451 NIKV--YNIVESYNPVTNKWTEL-----SSLNFPRINASLCIFNNKIYVVGGDKYEYYI- 502
Query: 262 KNQSEKGIIHSDLWSLDPR 280
N+ E ++ W+L +
Sbjct: 503 -NEIEVYDDKTNTWTLFCK 520
|
Length = 534 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 94 GNKTYVYG------DLYRYDVEKQE--WKVISS-PNSPPPRSAHQAVSWKNYLYIFGGEF 144
N YV G Y+ D+ W I++ P PR A LY+FGG
Sbjct: 38 NNTVYV-GLGSAGTSWYKLDLNAPSKGWTKIAAFPG--GPREQAVAAFIDGKLYVFGGIG 94
Query: 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS--GHRMV-LYKHKIIVFGG 197
+ ++ + D + D KTN W++L+ + SP GH V L+ K + GG
Sbjct: 95 KTNSEGSPQVFDDVYKYDPKTNSWQKLDTR---SPVGLAGHVAVSLHNGKAYITGG 147
|
Length = 376 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 1e-04
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282
P PR+ V E++LYGGY+ S G D++ L +
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGYT---------SGNGQSSDDVYVLSLPGF 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226
PRSG +V+ KI V GG+ + + + V+D + W ++
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGG----QSLSSVEVYDPETNTWSKLPS 44
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS 121
PR+ + + + L L+GGE +G V D++ +D+ W + S S
Sbjct: 1 PRAYHTST--SIGDGRLYLFGGENEDG---SVLSDVWVFDLSTNTWTRLPSLPS 49
|
Length = 49 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 2e-04
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 179 PRSGHRMV-LYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226
PR+ H + ++ +FGG + + +D++VFDL W +
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENE---DGSVLSDVWVFDLSTNTWTRLPS 46
|
Length = 49 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 2e-04
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 13/63 (20%)
Query: 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294
PR+G +++++GGYS + + DP T W K+ P
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSN----------GSKASNKVLVYDPETGSWE---KLPPLP 47
Query: 295 GPR 297
PR
Sbjct: 48 TPR 50
|
Length = 50 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 3e-04
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226
PR+GH V KI VFGG+ + + N + V+D + W+++ P
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSN---GSKASNKVLVYDPETGSWEKLPP 45
|
Length = 50 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 31/221 (14%)
Query: 95 NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHH 154
+ YD + + W + P PR + N +Y+ GG + S +
Sbjct: 305 KNNLSVNSVVSYDTKTKSWNKV--PELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTV-- 360
Query: 155 YKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213
+ W ++W + L PR +V + I V GG + +
Sbjct: 361 --ESW--KPGESKWREEPPLI---FPRYNPCVVNVNNLIYVIGGISKNDELL---KTVEC 410
Query: 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSD 273
F L+ KW GS P G + ++++ GG S N I+
Sbjct: 411 FSLNTNKW-----SKGSPLPISHYGGCAIYHDGKIYVIGGISYI----DNIKVYNIVE-- 459
Query: 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
S +P T +W+++ + PR S+C+ + + GG
Sbjct: 460 --SYNPVTNKWTELSSLNF---PRINASLCIFNNKIYVVGG 495
|
Length = 534 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 3e-04
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL 171
PRS V +Y+ GG Q + D +TN W +L
Sbjct: 1 PRSGAGVVVLGGKIYVIGG--YDGGQ----SLSSVEVYDPETNTWSKL 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 517 DDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVA 564
DD +D+ E+ D+ D D D++D E D + V+
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVS 270
|
This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 9e-04
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
Query: 209 NDLYVFDLDQF--KWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
Y DL + WQ+I +P PR+ +++++GG K S Q
Sbjct: 29 TSWYKLDLKKPSKGWQKIAD-----FPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQ- 82
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC-VHKKRALLFGGV 315
+ D++ DP+ W K+ P G S +H +A GGV
Sbjct: 83 ----VFDDVYRYDPKKNSWQKLDTR--SPVGLLGASGFSLHNGQAYFTGGV 127
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 235 PRSGFQ-FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287
PR+ + ++L+GG + E G + SD+W D T W+++
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGEN----------EDGSVLSDVWVFDLSTNTWTRL 44
|
Length = 49 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 26/205 (12%)
Query: 350 KEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLS 409
STK +L E K L K ++ K+E E E + ID +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAK-----SKSKGFITKEEIKEALESKKKTPEQIDQVL 56
Query: 410 ECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVY 469
+ V D + K ++ K+ K+ KD L
Sbjct: 57 IFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKA-------------PAKKKLKDELDSS 103
Query: 470 GGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNG 529
+ N + D Y ++ L++ + + ++ + +D+DDDEDD ED
Sbjct: 104 KKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDED---- 159
Query: 530 GSSSDETGDDDDDDEEDAEARDGDA 554
D+ D DD+DEE EA++ +
Sbjct: 160 ----DDDDDVDDEDEEKKEAKELEK 180
|
Length = 509 |
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 501 PASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARD 551
+ E E +G D++D+EDD +D D + +++D+++ED++ D
Sbjct: 319 GEEDEEEEE--DGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDED 367
|
Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.001
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG 175
PR H +V LY+ GG T D W+LD +TN W +L
Sbjct: 1 PRYPHASVVVGGKLYVVGG-STGLGDLSS---SDLWVLDPETNVWTELPALP 48
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 94 GNKTYVYG------DLYRYDVEKQE--WKVISSPNSP-PPRSAHQAVSWKNYLYIFGGEF 144
G+K YV G Y+ D++K W+ I + P PR+ A + LY+FGG
Sbjct: 17 GDKVYV-GLGSAGTSWYKLDLKKPSKGWQKI--ADFPGGPRNQAVAAAIDGKLYVFGGIG 73
Query: 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS--GHRMV-LYKHKIIVFGGF 198
+ ++ + D + D K N W++L+ SP G L+ + GG
Sbjct: 74 KANSEGSPQVFDDVYRYDPKKNSWQKLD---TRSPVGLLGASGFSLHNGQAYFTGGV 127
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 11/56 (19%), Positives = 29/56 (51%)
Query: 509 EASEGEDEDDDEDDSEDEGNGGSSSDETGDDDDDDEEDAEARDGDAGSLQMGDAVA 564
A ++ED+D+ +++ + G + D ++ DA + + ++G ++ +A A
Sbjct: 218 SADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASA 273
|
This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 14/110 (12%)
Query: 209 NDLYVFDLDQF--KWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265
Y DL+ W +I +P PR +++++GG K S Q
Sbjct: 50 TSWYKLDLNAPSKGWTKIAA-----FPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQ- 103
Query: 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315
+ D++ DP+T W K+ P G ++ +H +A + GGV
Sbjct: 104 ----VFDDVYKYDPKTNSWQKLDTRS-PVGLAGHVAVSLHNGKAYITGGV 148
|
Length = 376 |
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 476 NDQEITLDDLYSLNLSKLDEWKCIIPASESEWVEASEGEDEDDDEDDSEDEGNGGSSSDE 535
++ E DD + L + DE E + V+ + ED+DDD ++ E++ + ++
Sbjct: 304 DEFEPDDDDNFGLGQGEEDE------EEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEED 357
Query: 536 TGDDDDDDEEDAEARD 551
D+D DDE+D E +
Sbjct: 358 EEDEDSDDEDDEEEEE 373
|
Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.003
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226
PR H V+ K+ V GG +DL+V D + W E+
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSS--SDLWVLDPETNVWTELPA 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 647 | |||
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 100.0 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 100.0 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.97 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 99.97 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 99.97 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.97 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.97 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 99.97 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.78 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.78 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.63 | |
| PF13422 | 96 | DUF4110: Domain of unknown function (DUF4110) | 99.59 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.51 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 98.98 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 98.94 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.79 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 98.79 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.75 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.69 | |
| PLN02772 | 398 | guanylate kinase | 98.67 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.66 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.65 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.61 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.59 | |
| PLN02772 | 398 | guanylate kinase | 98.59 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.56 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.56 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.45 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 98.43 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 98.21 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.17 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.15 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 97.97 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 97.77 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.25 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.24 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 96.98 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.85 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.75 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.72 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.44 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 96.38 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.32 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 95.58 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 95.19 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 95.14 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 95.1 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 95.0 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 94.94 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 94.92 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.63 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 94.5 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 94.3 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.81 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 93.8 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 93.68 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 93.53 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 93.38 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 93.33 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 93.06 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 93.0 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 92.88 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 92.84 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 92.7 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 92.62 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 92.53 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 92.19 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 92.13 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 91.93 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 91.61 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 91.36 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 91.28 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 90.83 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 90.8 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 90.69 | |
| PF10446 | 458 | DUF2457: Protein of unknown function (DUF2457); In | 90.41 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 90.26 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 89.31 | |
| PF12217 | 367 | End_beta_propel: Catalytic beta propeller domain o | 89.06 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 88.9 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 88.1 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 88.08 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 87.59 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 86.97 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 86.96 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 86.11 | |
| PF06524 | 314 | NOA36: NOA36 protein; InterPro: IPR010531 This fam | 85.93 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 85.55 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 85.34 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 85.12 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 84.76 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 84.29 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 83.98 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 83.67 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 83.32 | |
| PTZ00421 | 493 | coronin; Provisional | 83.21 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 83.02 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 82.6 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 82.28 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 81.35 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 81.13 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 80.76 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 80.45 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 80.35 |
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-79 Score=615.04 Aligned_cols=478 Identities=46% Similarity=0.773 Sum_probs=382.6
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHhhhhhcceEEEEeccCCCCCCCCcceEEEEeccC
Q 006384 1 MGKKNKKAGKGKEKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLK 80 (647)
Q Consensus 1 m~k~~~~~~~~~~k~~~k~~k~~~k~~~~~~~~~~~~edi~~~l~~~~~~e~~~~~~~~~~~~~~P~~R~~~s~~~~~~~ 80 (647)
||||+||++|+|. ++++++|+.+|.+++. +++.++.|+..|...|+..+++....+++..+++|+||.+++++++|.+
T Consensus 1 MgKK~Kk~kkgk~-aek~a~K~dkK~akr~-kkl~~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nPek 78 (521)
T KOG1230|consen 1 MGKKNKKDKKGKG-AEKTAAKQDKKFAKRK-KKLNEELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANPEK 78 (521)
T ss_pred CCccccCcccccc-hhhhHHHHHHHHHhhh-hhcCcccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeeccCc
Confidence 9999888777763 3334444444444444 6677777777777788888887767777788999999999999999987
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEEC-CEEEEEeCCcCCCCCccccccCcEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~-~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
+.|+||||++++|+++.+||+||+||+.+++|+++.+++.|+||++|++|++. |.+|||||.+.++++.+|+||+|+|
T Consensus 79 -eELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W 157 (521)
T KOG1230|consen 79 -EELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW 157 (521)
T ss_pred -ceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence 69999999999999999999999999999999999999999999999999995 8999999999999999999999999
Q ss_pred EEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceee
Q 006384 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239 (647)
Q Consensus 160 ~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~ 239 (647)
+||+.+++|+++...+.|+||++|+|++++++|+|||||++..++..|+||||+||+.+.+|+++.+. +..|.||+||
T Consensus 158 ~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps--ga~PtpRSGc 235 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS--GAGPTPRSGC 235 (521)
T ss_pred eeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC--CCCCCCCCcc
Confidence 99999999999999989999999999999999999999999999999999999999999999999984 4489999999
Q ss_pred eEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC-----CeEEEeecCCCCCCCceeeEEEEE-CCeEEEe
Q 006384 240 QFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-----WEWSKVKKIGMPPGPRAGFSMCVH-KKRALLF 312 (647)
Q Consensus 240 s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-----~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyif 312 (647)
++++. .+.|||+|||+.. ..+.....+..++|+|.++|.. ..|+++.+.|..|.||+++++++. +++.|+|
T Consensus 236 q~~vtpqg~i~vyGGYsK~--~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~F 313 (521)
T KOG1230|consen 236 QFSVTPQGGIVVYGGYSKQ--RVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFF 313 (521)
T ss_pred eEEecCCCcEEEEcchhHh--hhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEe
Confidence 99999 9999999999987 5777888999999999999988 899999999999999999999998 5699999
Q ss_pred cceeccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchh
Q 006384 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENA 392 (647)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 392 (647)
||+.+.+..++.+.+.|+||||.||+..++|+...+.+.++....+++.. .+....+.+...+ .+.-|-
T Consensus 314 GGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S~~~~~r~~~------Kd~~k~~~~~~~G---~~tkd~-- 382 (521)
T KOG1230|consen 314 GGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKKSPATSRRRSR------KDQEKELQRPTVG---PNTKDL-- 382 (521)
T ss_pred cceecccccchhhhhhhhhhhhheecccchhhHhhhccCCCCcccccccc------ccccccccCcccC---CCcccc--
Confidence 99999999999999999999999999999999998766554432211111 1111111000000 000000
Q ss_pred hhhhhhhhcccccccccccCCccee-ecCceee---eecCCCCCcc-cccccccccCCCCCcCCccccccceeeecCeEE
Q 006384 393 EYYEEADEMESNIDNLSECVPNSVI-VDDGVLA---AKSGGKPYES-KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLY 467 (647)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Ly 467 (647)
+ .......+. +-.+++. +..++....+ ++......++....--|.||+++.++|..+.||
T Consensus 383 ---------e------~~~v~k~v~~~~d~l~i~v~v~~~g~~~~p~s~~e~s~~~~~e~~~~~~pr~d~~~~v~~G~~~ 447 (521)
T KOG1230|consen 383 ---------E------VQAVDKAVCPTTDSLFIYVGVWEPGEADYPESEDEASREGDREPDEGEFPRMDDELSVKVGVLY 447 (521)
T ss_pred ---------c------ceecceeeeecCCceEEEeecCCCCCCCCcccccccccccCCCCCCCCCccCCCccCcccceEE
Confidence 0 000001111 1122221 1111111111 111122222222222599999999999999999
Q ss_pred EecceEeecCeEEeecceeccccCCccceEEeccCCc--hhhcccc
Q 006384 468 VYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASE--SEWVEAS 511 (647)
Q Consensus 468 i~GG~~e~g~~e~tl~D~~~ldl~~~d~w~~~~~~~~--~~w~~~~ 511 (647)
|+||+++.+|++.||.|||+|+|+++..|+.|.+.+. .||++..
T Consensus 448 i~gGi~ee~d~q~tl~dfyal~~hr~~~~K~L~~~sfe~~E~re~~ 493 (521)
T KOG1230|consen 448 IGGGIFEERDWQPTLRDFYALDLHRNEKGKQLKTKSFELCEWRERR 493 (521)
T ss_pred ecCCCcccccccchHHHHhhhhhhhhhhhhhhccCCchhhhhhhhh
Confidence 9999999999999999999999999889999999876 4898653
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=368.34 Aligned_cols=279 Identities=23% Similarity=0.408 Sum_probs=216.3
Q ss_pred ceEEEEeccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCC-CCCC-cceeEE
Q 006384 53 KKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPP-RSAHQA 130 (647)
Q Consensus 53 ~~~~~~~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~-~P~~-R~~ha~ 130 (647)
.|..+.. ....+|.||.+|+++++ ++.||||||.... .....+++|+||+.+++|..++++. .|.+ +.+|++
T Consensus 8 ~W~~~~~-~~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~--~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~ 81 (341)
T PLN02153 8 GWIKVEQ-KGGKGPGPRCSHGIAVV---GDKLYSFGGELKP--NEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRM 81 (341)
T ss_pred eEEEecC-CCCCCCCCCCcceEEEE---CCEEEEECCccCC--CCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEE
Confidence 4554443 22347899999999999 8999999996322 2235689999999999999987653 2332 447899
Q ss_pred EEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccC---CCCCCcceeEEEEECCEEEEEecccCCCC--ce
Q 006384 131 VSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK---GCPSPRSGHRMVLYKHKIIVFGGFYDTLR--EV 205 (647)
Q Consensus 131 v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~---~~P~~R~~h~~~~~~~~lyv~GG~~~~~~--~~ 205 (647)
++++++||||||..... .++++++||+.+++|+.++.. ..|.+|.+|++++++++||||||+..... ..
T Consensus 82 ~~~~~~iyv~GG~~~~~------~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 155 (341)
T PLN02153 82 VAVGTKLYIFGGRDEKR------EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTP 155 (341)
T ss_pred EEECCEEEEECCCCCCC------ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCC
Confidence 99999999999975432 468999999999999998762 12889999999999999999999864321 12
Q ss_pred eeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEE
Q 006384 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (647)
Q Consensus 206 ~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (647)
..++++++||+.+++|+.++.+ ...|.+|.+|++++++++|||+||.... ...+. ......+++++||+.+++|+
T Consensus 156 ~~~~~v~~yd~~~~~W~~l~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~--~~~gG-~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 156 ERFRTIEAYNIADGKWVQLPDP--GENFEKRGGAGFAVVQGKIWVVYGFATS--ILPGG-KSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred cccceEEEEECCCCeEeeCCCC--CCCCCCCCcceEEEECCeEEEEeccccc--cccCC-ccceecCceEEEEcCCCcEE
Confidence 2468999999999999999876 2346899999999999999999997532 10000 01123678999999999999
Q ss_pred EeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 286 KVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 286 ~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
++...+..|.+|..|++++++++||||||.......+........|+||+||+.+++|+.+..
T Consensus 231 ~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 231 EVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred eccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 998877789999999999999999999997532211111224567899999999999998865
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=376.54 Aligned_cols=258 Identities=25% Similarity=0.449 Sum_probs=213.5
Q ss_pred CCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCC-CCCC-CcceeEEEEECCEEEE
Q 006384 62 NVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSP-NSPP-PRSAHQAVSWKNYLYI 139 (647)
Q Consensus 62 ~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~-~~P~-~R~~ha~v~~~~~iyv 139 (647)
...+|.||.+|+++++ ++.||||||.... .....+++|+||+.+++|..++.+ ..|. +|.+|++++++++|||
T Consensus 159 ~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~--~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYv 233 (470)
T PLN02193 159 KGEGPGLRCSHGIAQV---GNKIYSFGGEFTP--NQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYV 233 (470)
T ss_pred CCCCCCCccccEEEEE---CCEEEEECCcCCC--CCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEE
Confidence 3457899999999999 8999999996322 223567999999999999987754 2344 3678999999999999
Q ss_pred EeCCcCCCCCccccccCcEEEEECCCCcEEEcccCC-CCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 140 ~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~-~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
|||.... ..++++|+||+.+++|+.+.+.+ .|.+|++|++++++++||||||+... ..++++++||+.+
T Consensus 234 fGG~~~~------~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~----~~~~~~~~yd~~t 303 (470)
T PLN02193 234 FGGRDAS------RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT----ARLKTLDSYNIVD 303 (470)
T ss_pred ECCCCCC------CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCC----CCcceEEEEECCC
Confidence 9997643 24799999999999999998732 28899999999999999999998653 2478999999999
Q ss_pred CceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCce
Q 006384 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (647)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~ 298 (647)
++|+.+++. ...|.+|.+|++++++++|||+||.... .++++++||+.+++|+++..++..|.+|.
T Consensus 304 ~~W~~~~~~--~~~~~~R~~~~~~~~~gkiyviGG~~g~------------~~~dv~~yD~~t~~W~~~~~~g~~P~~R~ 369 (470)
T PLN02193 304 KKWFHCSTP--GDSFSIRGGAGLEVVQGKVWVVYGFNGC------------EVDDVHYYDPVQDKWTQVETFGVRPSERS 369 (470)
T ss_pred CEEEeCCCC--CCCCCCCCCcEEEEECCcEEEEECCCCC------------ccCceEEEECCCCEEEEeccCCCCCCCcc
Confidence 999998764 3357899999999999999999997533 36889999999999999998888899999
Q ss_pred eeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 299 ~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.|++++++++||||||..............++|++|+||+.+++|+.+..
T Consensus 370 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 370 VFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred eeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 99999999999999998653222222224567899999999999998875
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=344.83 Aligned_cols=270 Identities=28% Similarity=0.590 Sum_probs=229.2
Q ss_pred CCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEEC-CEEEEEe
Q 006384 120 NSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK-HKIIVFG 196 (647)
Q Consensus 120 ~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~-~~lyv~G 196 (647)
..|.||++.++++. .+.|+||||.+..... .++||++|.||+.+++|..+..+..|.||++|.+|++. |.|||||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqk--T~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQK--THVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeeccee--EEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEec
Confidence 35789999998887 4789999998776443 67899999999999999999887789999999999985 8999999
Q ss_pred cccCCCCce--eeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeE
Q 006384 197 GFYDTLREV--RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274 (647)
Q Consensus 197 G~~~~~~~~--~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv 274 (647)
|-....... ..+.|+|.||+.+++|.++.... .|.||+||-|++...+|+||||+... .+...++||+
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g---~PS~RSGHRMvawK~~lilFGGFhd~-------nr~y~YyNDv 209 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG---GPSPRSGHRMVAWKRQLILFGGFHDS-------NRDYIYYNDV 209 (521)
T ss_pred cccCCcchhhhhhhhheeeeeeccchheeeccCC---CCCCCccceeEEeeeeEEEEcceecC-------CCceEEeeee
Confidence 976543322 25789999999999999998764 49999999999999999999998654 4456789999
Q ss_pred EEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCC-----CcEEEeEe
Q 006384 275 WSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-----HRWYPLEL 348 (647)
Q Consensus 275 ~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t-----~~W~~l~~ 348 (647)
|+||+.+.+|+++.+.|..|.||+||++++. ++.|||+||++......+...++..+|+|.+++.. ..|.++.+
T Consensus 210 y~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 210 YAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred EEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 9999999999999999889999999999998 99999999998877777777889999999999998 56777766
Q ss_pred cCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecC
Q 006384 349 RKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSG 428 (647)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (647)
.+
T Consensus 290 ~g------------------------------------------------------------------------------ 291 (521)
T KOG1230|consen 290 SG------------------------------------------------------------------------------ 291 (521)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCcccccccccccCCCCCcCCccccccceeeecC-eEEEecceEeec-CeE----EeecceeccccCCccceEEec
Q 006384 429 GKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKD-TLYVYGGMMEIN-DQE----ITLDDLYSLNLSKLDEWKCII 500 (647)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~-~Lyi~GG~~e~g-~~e----~tl~D~~~ldl~~~d~w~~~~ 500 (647)
+.|.||.+++.+|..| +-|.|||++... +.| .-+||||.|||.. ++|....
T Consensus 292 --------------------~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~-nrW~~~q 348 (521)
T KOG1230|consen 292 --------------------VKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTR-NRWSEGQ 348 (521)
T ss_pred --------------------CCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheeccc-chhhHhh
Confidence 1599999999988766 899999987521 111 3389999999988 9997653
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=316.42 Aligned_cols=263 Identities=23% Similarity=0.447 Sum_probs=224.0
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCCCcc--eeeCcEEEEECCCCeEEEecCC-----------CCCCCcceeEEEE
Q 006384 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKT--YVYGDLYRYDVEKQEWKVISSP-----------NSPPPRSAHQAVS 132 (647)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~--~~~ndl~~yd~~~~~W~~l~s~-----------~~P~~R~~ha~v~ 132 (647)
-+.|.+|+++.+ +.+||-|||.. .|... .--=|+.++|..+-+|.++++. ..|-.|++|+++.
T Consensus 11 GPrRVNHAavaV---G~riYSFGGYC-sGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~ 86 (392)
T KOG4693|consen 11 GPRRVNHAAVAV---GSRIYSFGGYC-SGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVE 86 (392)
T ss_pred Ccccccceeeee---cceEEecCCcc-cccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEE
Confidence 346899999999 89999999963 22211 1123789999999999988762 2466799999999
Q ss_pred ECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC-CCCcceeEEEEECCEEEEEecccCCCCceeeeCcE
Q 006384 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 133 ~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
+.+++||.||.+.... ..|-++.||++++.|.+....+. |.+|-+|++|++++.+|||||+.... .++.+++
T Consensus 87 y~d~~yvWGGRND~eg-----aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a--~~FS~d~ 159 (392)
T KOG4693|consen 87 YQDKAYVWGGRNDDEG-----ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDA--QRFSQDT 159 (392)
T ss_pred EcceEEEEcCccCccc-----ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHH--Hhhhccc
Confidence 9999999999987644 46899999999999999887765 99999999999999999999997643 3578999
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCC
Q 006384 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (647)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g 291 (647)
+.||+.|.+|+.+... +.+|.-|-.|+++++++.+|||||.... ..........+.+.+..||+.+..|.+....+
T Consensus 160 h~ld~~TmtWr~~~Tk--g~PprwRDFH~a~~~~~~MYiFGGR~D~--~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 160 HVLDFATMTWREMHTK--GDPPRWRDFHTASVIDGMMYIFGGRSDE--SGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred eeEeccceeeeehhcc--CCCchhhhhhhhhhccceEEEecccccc--CCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 9999999999999887 6678899999999999999999999876 33444455667788999999999999998888
Q ss_pred CCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecC
Q 006384 292 MPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRK 350 (647)
Q Consensus 292 ~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~ 350 (647)
..|..|..|++.+++++||||||++.. ....+|+||.|||.+..|..+..++
T Consensus 236 ~~P~GRRSHS~fvYng~~Y~FGGYng~-------ln~HfndLy~FdP~t~~W~~I~~~G 287 (392)
T KOG4693|consen 236 MKPGGRRSHSTFVYNGKMYMFGGYNGT-------LNVHFNDLYCFDPKTSMWSVISVRG 287 (392)
T ss_pred cCCCcccccceEEEcceEEEecccchh-------hhhhhcceeecccccchheeeeccC
Confidence 889999999999999999999999863 3567899999999999999999843
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=344.38 Aligned_cols=299 Identities=22% Similarity=0.376 Sum_probs=238.3
Q ss_pred CCCCC-cceEEEEeccCCCEEEEEcCeecCCCcceeeCcE--EEEECCC----CeEEEecCC-CCCCCcceeEEEEECCE
Q 006384 65 APSPR-SNCSLNINPLKETELILYGGEFYNGNKTYVYGDL--YRYDVEK----QEWKVISSP-NSPPPRSAHQAVSWKNY 136 (647)
Q Consensus 65 ~P~~R-~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl--~~yd~~~----~~W~~l~s~-~~P~~R~~ha~v~~~~~ 136 (647)
+|... .+..+++. +++|+.|+|+. +. .++.+ |.+++.+ ++|..++++ ..|.||.+|+++++++.
T Consensus 106 ~~~g~~~g~~f~~~---~~~ivgf~G~~--~~---~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~ 177 (470)
T PLN02193 106 HPIEKRPGVKFVLQ---GGKIVGFHGRS--TD---VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNK 177 (470)
T ss_pred cccccCCCCEEEEc---CCeEEEEeccC--CC---cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCE
Confidence 44443 44445543 89999999962 22 34444 4446544 899998764 35889999999999999
Q ss_pred EEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCC-CCC-CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEE
Q 006384 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 137 iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~-~P~-~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (647)
||||||...... ...+++|+||+.+++|+.++..+ .|. .|.+|++++++++||||||+... ..++++|+|
T Consensus 178 iyv~GG~~~~~~----~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~----~~~ndv~~y 249 (470)
T PLN02193 178 IYSFGGEFTPNQ----PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS----RQYNGFYSF 249 (470)
T ss_pred EEEECCcCCCCC----CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC----CCCccEEEE
Confidence 999999754322 14578999999999999887643 344 36789999999999999998643 257999999
Q ss_pred EcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCC
Q 006384 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294 (647)
Q Consensus 215 D~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P 294 (647)
|+.+++|+.++++. ..|.+|++|++++++++||||||+... ..++++++||+.+++|+.++..+.+|
T Consensus 250 D~~t~~W~~l~~~~--~~P~~R~~h~~~~~~~~iYv~GG~~~~-----------~~~~~~~~yd~~t~~W~~~~~~~~~~ 316 (470)
T PLN02193 250 DTTTNEWKLLTPVE--EGPTPRSFHSMAADEENVYVFGGVSAT-----------ARLKTLDSYNIVDKKWFHCSTPGDSF 316 (470)
T ss_pred ECCCCEEEEcCcCC--CCCCCccceEEEEECCEEEEECCCCCC-----------CCcceEEEEECCCCEEEeCCCCCCCC
Confidence 99999999998763 348899999999999999999998654 35678999999999999998766678
Q ss_pred CCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhc
Q 006384 295 GPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374 (647)
Q Consensus 295 ~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (647)
.+|.+|++++++++|||+||... ..+++|++||+.+++|+.+...+.
T Consensus 317 ~~R~~~~~~~~~gkiyviGG~~g----------~~~~dv~~yD~~t~~W~~~~~~g~----------------------- 363 (470)
T PLN02193 317 SIRGGAGLEVVQGKVWVVYGFNG----------CEVDDVHYYDPVQDKWTQVETFGV----------------------- 363 (470)
T ss_pred CCCCCcEEEEECCcEEEEECCCC----------CccCceEEEECCCCEEEEeccCCC-----------------------
Confidence 89999999999999999999753 236899999999999999876210
Q ss_pred cCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccc
Q 006384 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGR 454 (647)
Q Consensus 375 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R 454 (647)
.|.+|
T Consensus 364 ---------------------------------------------------------------------------~P~~R 368 (470)
T PLN02193 364 ---------------------------------------------------------------------------RPSER 368 (470)
T ss_pred ---------------------------------------------------------------------------CCCCc
Confidence 48999
Q ss_pred cccceeeecCeEEEecceEeecC-----eEEeecceeccccCCccceEEecc
Q 006384 455 INSCMVVGKDTLYVYGGMMEIND-----QEITLDDLYSLNLSKLDEWKCIIP 501 (647)
Q Consensus 455 ~~~~~~v~~~~Lyi~GG~~e~g~-----~e~tl~D~~~ldl~~~d~w~~~~~ 501 (647)
..|+++++++.||||||...... ....++|+|.||+.+ ++|+.+..
T Consensus 369 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t-~~W~~~~~ 419 (470)
T PLN02193 369 SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET-LQWERLDK 419 (470)
T ss_pred ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCc-CEEEEccc
Confidence 99999999999999999753110 113478999999999 99998864
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=356.19 Aligned_cols=284 Identities=21% Similarity=0.366 Sum_probs=248.8
Q ss_pred CCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCc
Q 006384 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEF 144 (647)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~ 144 (647)
.+.+|..... .. .+.||++||... .....+.+.+||+.+++|..++.+ |.+|..++++++++.||++||++
T Consensus 272 ~~~~~t~~r~-~~---~~~l~~vGG~~~---~~~~~~~ve~yd~~~~~w~~~a~m--~~~r~~~~~~~~~~~lYv~GG~~ 342 (571)
T KOG4441|consen 272 MQSPRTRPRR-SV---SGKLVAVGGYNR---QGQSLRSVECYDPKTNEWSSLAPM--PSPRCRVGVAVLNGKLYVVGGYD 342 (571)
T ss_pred ccCCCcccCc-CC---CCeEEEECCCCC---CCcccceeEEecCCcCcEeecCCC--CcccccccEEEECCEEEEEcccc
Confidence 5666655443 22 589999999632 234678999999999999999885 58999999999999999999998
Q ss_pred CCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
.. ...++.+|+||+.+++|..+++ |+.+|.+|+++++++.||++||+++ ..+++++++||+.+++|+.+
T Consensus 343 ~~-----~~~l~~ve~YD~~~~~W~~~a~--M~~~R~~~~v~~l~g~iYavGG~dg----~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 343 SG-----SDRLSSVERYDPRTNQWTPVAP--MNTKRSDFGVAVLDGKLYAVGGFDG----EKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CC-----CcccceEEEecCCCCceeccCC--ccCccccceeEEECCEEEEEecccc----ccccccEEEecCCCCccccc
Confidence 51 2367999999999999999988 9999999999999999999999985 34799999999999999999
Q ss_pred ccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE
Q 006384 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (647)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~ 304 (647)
+++ +.+|++|++++++++||++||.+.. ...++.+.+|||.+++|+.+++| +.+|.++++++
T Consensus 412 a~m-----~~~r~~~gv~~~~g~iYi~GG~~~~----------~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~ 473 (571)
T KOG4441|consen 412 APM-----LTRRSGHGVAVLGGKLYIIGGGDGS----------SNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAV 473 (571)
T ss_pred CCC-----CcceeeeEEEEECCEEEEEcCcCCC----------ccccceEEEEcCCCCceeecCCc---ccccccceEEE
Confidence 999 7799999999999999999999876 23889999999999999999887 89999999999
Q ss_pred ECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcc
Q 006384 305 HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFD 384 (647)
Q Consensus 305 ~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (647)
++++||++||.++ ......|++||+.+++|+.+..
T Consensus 474 ~~~~iYvvGG~~~---------~~~~~~VE~ydp~~~~W~~v~~------------------------------------ 508 (571)
T KOG4441|consen 474 LNGKIYVVGGFDG---------TSALSSVERYDPETNQWTMVAP------------------------------------ 508 (571)
T ss_pred ECCEEEEECCccC---------CCccceEEEEcCCCCceeEccc------------------------------------
Confidence 9999999999876 2345669999999999999976
Q ss_pred cCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecC
Q 006384 385 ANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKD 464 (647)
Q Consensus 385 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~ 464 (647)
|+.+|.++++++.++
T Consensus 509 -----------------------------------------------------------------m~~~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 509 -----------------------------------------------------------------MTSPRSAVGVVVLGG 523 (571)
T ss_pred -----------------------------------------------------------------CccccccccEEEECC
Confidence 789999999999999
Q ss_pred eEEEecceEeecCeEEeecceeccccCCccceEEecc
Q 006384 465 TLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIP 501 (647)
Q Consensus 465 ~Lyi~GG~~e~g~~e~tl~D~~~ldl~~~d~w~~~~~ 501 (647)
.||+.||... .-.|+.+-+||..+ |+|+.+.+
T Consensus 524 ~ly~vGG~~~----~~~l~~ve~ydp~~-d~W~~~~~ 555 (571)
T KOG4441|consen 524 KLYAVGGFDG----NNNLNTVECYDPET-DTWTEVTE 555 (571)
T ss_pred EEEEEecccC----ccccceeEEcCCCC-CceeeCCC
Confidence 9999999542 24589999999999 99999887
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=324.23 Aligned_cols=281 Identities=21% Similarity=0.347 Sum_probs=219.2
Q ss_pred CCCCeEEEecCCC--CCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCC-CCCC-ccee
Q 006384 108 VEKQEWKVISSPN--SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSP-RSGH 183 (647)
Q Consensus 108 ~~~~~W~~l~s~~--~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~-~P~~-R~~h 183 (647)
+...+|..+.... .|.||.+|+++++++.||||||...... ...+++|+||+.+++|..+++.+ .|.. +.+|
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~----~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNE----HIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCC----ceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 3567899987642 5889999999999999999999854321 24589999999999999988743 2332 3478
Q ss_pred EEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCccc
Q 006384 184 RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN 263 (647)
Q Consensus 184 ~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~ 263 (647)
++++++++||||||+... ..++++++||+.+++|+.++.+.....|.+|.+|++++++++||||||.... .
T Consensus 80 ~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~--~--- 150 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEK----REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKG--G--- 150 (341)
T ss_pred EEEEECCEEEEECCCCCC----CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCC--C---
Confidence 999999999999998643 2478999999999999999876433458899999999999999999998643 0
Q ss_pred CCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 264 ~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
.......++++++||+.+++|+.++.++.+|.+|.+|++++++++|||+||.......+. ......++|++||+.+++|
T Consensus 151 ~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG-~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 151 LMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGG-KSDYESNAVQFFDPASGKW 229 (341)
T ss_pred ccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCC-ccceecCceEEEEcCCCcE
Confidence 000112457899999999999999887777789999999999999999999753211000 0012368899999999999
Q ss_pred EEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCcee
Q 006384 344 YPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVL 423 (647)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (647)
+.+...+.
T Consensus 230 ~~~~~~g~------------------------------------------------------------------------ 237 (341)
T PLN02153 230 TEVETTGA------------------------------------------------------------------------ 237 (341)
T ss_pred EeccccCC------------------------------------------------------------------------
Confidence 99875210
Q ss_pred eeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeec-----CeEEeecceeccccCCccceEE
Q 006384 424 AAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEIN-----DQEITLDDLYSLNLSKLDEWKC 498 (647)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g-----~~e~tl~D~~~ldl~~~d~w~~ 498 (647)
+|.+|..|+++++++.||||||..... .....++|+|.||+.+ +.|+.
T Consensus 238 --------------------------~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~-~~W~~ 290 (341)
T PLN02153 238 --------------------------KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET-LVWEK 290 (341)
T ss_pred --------------------------CCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc-cEEEe
Confidence 599999999999999999999974210 1223478999999999 99998
Q ss_pred ecc
Q 006384 499 IIP 501 (647)
Q Consensus 499 ~~~ 501 (647)
+..
T Consensus 291 ~~~ 293 (341)
T PLN02153 291 LGE 293 (341)
T ss_pred ccC
Confidence 864
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=323.89 Aligned_cols=257 Identities=19% Similarity=0.296 Sum_probs=190.7
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEEC--CCCeEEEecCCCCC-CCcceeEEEEECCEEEE
Q 006384 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDV--EKQEWKVISSPNSP-PPRSAHQAVSWKNYLYI 139 (647)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~--~~~~W~~l~s~~~P-~~R~~ha~v~~~~~iyv 139 (647)
+++|.+|.+++++++ +++|||+||. . .+.+|+||+ .+++|..++++ | .+|..|++++++++|||
T Consensus 2 ~~lp~~~~~~~~~~~---~~~vyv~GG~--~------~~~~~~~d~~~~~~~W~~l~~~--p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 2 PDLPVGFKNGTGAII---GDKVYVGLGS--A------GTSWYKLDLKKPSKGWQKIADF--PGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCCccccCceEEEE---CCEEEEEccc--c------CCeeEEEECCCCCCCceECCCC--CCCCcccceEEEECCEEEE
Confidence 468899999888888 8999999995 1 257899996 57899999875 4 47999999999999999
Q ss_pred EeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEE-EECCEEEEEecccCCCC---------------
Q 006384 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMV-LYKHKIIVFGGFYDTLR--------------- 203 (647)
Q Consensus 140 ~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~-~~~~~lyv~GG~~~~~~--------------- 203 (647)
+||............++++|+||+.+++|+.++. .+|.+|.+|+++ +++++||++||+.....
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 147 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSE 147 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccch
Confidence 9997543211112357899999999999999974 357888888877 78999999999853100
Q ss_pred ---------------ceeeeCcEEEEEcCCCceEEeccCCCCCCCC-CceeeeEEEeCCEEEEEecccCCCCCcccCCCC
Q 006384 204 ---------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (647)
Q Consensus 204 ---------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~-~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~ 267 (647)
...+++++++||+.+++|+.++++ |. +|.++++++++++|||+||....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~-----p~~~r~~~~~~~~~~~iyv~GG~~~~---------- 212 (346)
T TIGR03547 148 PKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN-----PFLGTAGSAIVHKGNKLLLINGEIKP---------- 212 (346)
T ss_pred hhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC-----CCCcCCCceEEEECCEEEEEeeeeCC----------
Confidence 001247899999999999999887 54 78999999999999999998543
Q ss_pred CceeeeEEEEe--CCCCeEEEeecCCCC----CCCceeeEEEEECCeEEEecceeccccCccc----cc----cccCCcE
Q 006384 268 GIIHSDLWSLD--PRTWEWSKVKKIGMP----PGPRAGFSMCVHKKRALLFGGVVDMEMKGDV----IM----SLFLNEL 333 (647)
Q Consensus 268 ~~~~~dv~~yd--~~t~~W~~v~~~g~~----P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~----~~----~~~~ndl 333 (647)
.....+++.|+ +.+++|+.++++..+ +..|.+|++++++++|||+||.+.....+.. .. ....+.+
T Consensus 213 ~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (346)
T TIGR03547 213 GLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSS 292 (346)
T ss_pred CccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEe
Confidence 12234555554 577899999876322 1223577788899999999998632110000 00 0012468
Q ss_pred EEEECCCCcEEEeEe
Q 006384 334 YGFQLDNHRWYPLEL 348 (647)
Q Consensus 334 ~~yd~~t~~W~~l~~ 348 (647)
.+||+.+++|+.+..
T Consensus 293 e~yd~~~~~W~~~~~ 307 (346)
T TIGR03547 293 EVYALDNGKWSKVGK 307 (346)
T ss_pred eEEEecCCcccccCC
Confidence 999999999987765
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=343.08 Aligned_cols=265 Identities=13% Similarity=0.204 Sum_probs=221.3
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
..+++||+.+++|..++++ |.+|.+|+++++++.|||+||..... ..++++++||+.+++|..+++ ||.+|
T Consensus 272 ~~v~~yd~~~~~W~~l~~m--p~~r~~~~~a~l~~~IYviGG~~~~~-----~~~~~v~~Yd~~~n~W~~~~~--m~~~R 342 (557)
T PHA02713 272 PCILVYNINTMEYSVISTI--PNHIINYASAIVDNEIIIAGGYNFNN-----PSLNKVYKINIENKIHVELPP--MIKNR 342 (557)
T ss_pred CCEEEEeCCCCeEEECCCC--CccccceEEEEECCEEEEEcCCCCCC-----CccceEEEEECCCCeEeeCCC--Ccchh
Confidence 4789999999999999874 67899999999999999999974221 146899999999999999988 89999
Q ss_pred ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCC
Q 006384 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (647)
Q Consensus 181 ~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~ 260 (647)
.+|++++++++||++||..+. ..++++++||+.+++|+.++++ |.+|.++++++++++|||+||.......
T Consensus 343 ~~~~~~~~~g~IYviGG~~~~----~~~~sve~Ydp~~~~W~~~~~m-----p~~r~~~~~~~~~g~IYviGG~~~~~~~ 413 (557)
T PHA02713 343 CRFSLAVIDDTIYAIGGQNGT----NVERTIECYTMGDDKWKMLPDM-----PIALSSYGMCVLDQYIYIIGGRTEHIDY 413 (557)
T ss_pred hceeEEEECCEEEEECCcCCC----CCCceEEEEECCCCeEEECCCC-----CcccccccEEEECCEEEEEeCCCccccc
Confidence 999999999999999998543 2478899999999999999988 8999999999999999999998642000
Q ss_pred ccc-------CCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcE
Q 006384 261 DKN-------QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (647)
Q Consensus 261 ~~~-------~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl 333 (647)
... ........+.+++|||.+++|+.++++ |.+|.++++++++++|||+||.++. ....+.+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~--------~~~~~~v 482 (557)
T PHA02713 414 TSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDE--------KNVKTCI 482 (557)
T ss_pred ccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCC--------CccceeE
Confidence 000 000012357899999999999999875 7889999999999999999997631 1123568
Q ss_pred EEEECCC-CcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccC
Q 006384 334 YGFQLDN-HRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECV 412 (647)
Q Consensus 334 ~~yd~~t-~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 412 (647)
++|||.+ ++|+.++.
T Consensus 483 e~Ydp~~~~~W~~~~~---------------------------------------------------------------- 498 (557)
T PHA02713 483 FRYNTNTYNGWELITT---------------------------------------------------------------- 498 (557)
T ss_pred EEecCCCCCCeeEccc----------------------------------------------------------------
Confidence 9999999 89998876
Q ss_pred CcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCC
Q 006384 413 PNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492 (647)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~ 492 (647)
||.+|..+++++++++|||+||... ...+.+||+.+
T Consensus 499 -------------------------------------m~~~r~~~~~~~~~~~iyv~Gg~~~-------~~~~e~yd~~~ 534 (557)
T PHA02713 499 -------------------------------------TESRLSALHTILHDNTIMMLHCYES-------YMLQDTFNVYT 534 (557)
T ss_pred -------------------------------------cCcccccceeEEECCEEEEEeeecc-------eeehhhcCccc
Confidence 7999999999999999999999853 23688999999
Q ss_pred ccceEEeccCC
Q 006384 493 LDEWKCIIPAS 503 (647)
Q Consensus 493 ~d~w~~~~~~~ 503 (647)
++|+.+.+..
T Consensus 535 -~~W~~~~~~~ 544 (557)
T PHA02713 535 -YEWNHICHQH 544 (557)
T ss_pred -ccccchhhhc
Confidence 9999988764
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=318.92 Aligned_cols=248 Identities=19% Similarity=0.309 Sum_probs=191.4
Q ss_pred CCCcceEEEEeccCCCEEEEEcCeecC------CCcceeeCcEEEEE-CC-CCeEEEecCCCCCCCcceeEEEEECCEEE
Q 006384 67 SPRSNCSLNINPLKETELILYGGEFYN------GNKTYVYGDLYRYD-VE-KQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (647)
Q Consensus 67 ~~R~~~s~~~~~~~~~~lyv~GG~~~~------g~~~~~~ndl~~yd-~~-~~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (647)
..++++.++++ ++.|||+||..+. +.....++++|+|+ +. +.+|..+++ +|.+|..|+++++++.||
T Consensus 2 ~~~~g~~~~~~---~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~--lp~~r~~~~~~~~~~~ly 76 (323)
T TIGR03548 2 LGVAGCYAGII---GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ--LPYEAAYGASVSVENGIY 76 (323)
T ss_pred CceeeEeeeEE---CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc--CCccccceEEEEECCEEE
Confidence 45788888888 8999999997543 22345788999996 33 237998876 468898888899999999
Q ss_pred EEeCCcCCCCCccccccCcEEEEECCCCcE----EEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEE
Q 006384 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQW----EQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 139 v~GG~~~~~~~~~~~~~~dv~~yD~~t~~W----~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (647)
++||..... .++++|+||+.+++| ..+++ +|.+|..|++++++++|||+||.... ..++++++|
T Consensus 77 viGG~~~~~------~~~~v~~~d~~~~~w~~~~~~~~~--lp~~~~~~~~~~~~~~iYv~GG~~~~----~~~~~v~~y 144 (323)
T TIGR03548 77 YIGGSNSSE------RFSSVYRITLDESKEELICETIGN--LPFTFENGSACYKDGTLYVGGGNRNG----KPSNKSYLF 144 (323)
T ss_pred EEcCCCCCC------CceeEEEEEEcCCceeeeeeEcCC--CCcCccCceEEEECCEEEEEeCcCCC----ccCceEEEE
Confidence 999975432 468999999999998 55555 78999999999999999999997532 247899999
Q ss_pred EcCCCceEEeccCCCCCCC-CCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCC-
Q 006384 215 DLDQFKWQEIKPRFGSMWP-SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM- 292 (647)
Q Consensus 215 D~~t~~W~~v~~~~~~~~P-~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~- 292 (647)
|+.+++|+.++++ | .+|..|++++++++|||+||.... ...++++||+.+++|+.++.+..
T Consensus 145 d~~~~~W~~~~~~-----p~~~r~~~~~~~~~~~iYv~GG~~~~------------~~~~~~~yd~~~~~W~~~~~~~~~ 207 (323)
T TIGR03548 145 NLETQEWFELPDF-----PGEPRVQPVCVKLQNELYVFGGGSNI------------AYTDGYKYSPKKNQWQKVADPTTD 207 (323)
T ss_pred cCCCCCeeECCCC-----CCCCCCcceEEEECCEEEEEcCCCCc------------cccceEEEecCCCeeEECCCCCCC
Confidence 9999999999877 4 478999999999999999998543 24578999999999999987632
Q ss_pred -CCCCceeeEE-EEECCeEEEecceeccccCcc-----------------------ccccccCCcEEEEECCCCcEEEeE
Q 006384 293 -PPGPRAGFSM-CVHKKRALLFGGVVDMEMKGD-----------------------VIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 293 -~P~~R~~~s~-~~~~~~iyifGG~~~~~~~~~-----------------------~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
.|.++.++++ ++.+++||||||.+....... .-...+.+++++||+.+++|+.++
T Consensus 208 ~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 208 SEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred CCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 2444444444 445799999999864210000 000123578999999999999887
Q ss_pred e
Q 006384 348 L 348 (647)
Q Consensus 348 ~ 348 (647)
.
T Consensus 288 ~ 288 (323)
T TIGR03548 288 N 288 (323)
T ss_pred c
Confidence 5
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=319.99 Aligned_cols=307 Identities=19% Similarity=0.277 Sum_probs=228.2
Q ss_pred EEEEeccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECC--CCeEEEecCCCCCCCcceeEEEE
Q 006384 55 KEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSPPPRSAHQAVS 132 (647)
Q Consensus 55 ~~~~~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~--~~~W~~l~s~~~P~~R~~ha~v~ 132 (647)
..+.+...+++|.||..++.+++ ++.|||+||. . .+.+|+||+. +++|..+++++ ..+|.+|++++
T Consensus 15 ~~~~~~~l~~lP~~~~~~~~~~~---~~~iyv~gG~--~------~~~~~~~d~~~~~~~W~~l~~~p-~~~r~~~~~v~ 82 (376)
T PRK14131 15 FAANAEQLPDLPVPFKNGTGAID---NNTVYVGLGS--A------GTSWYKLDLNAPSKGWTKIAAFP-GGPREQAVAAF 82 (376)
T ss_pred cceecccCCCCCcCccCCeEEEE---CCEEEEEeCC--C------CCeEEEEECCCCCCCeEECCcCC-CCCcccceEEE
Confidence 34556677899999998888888 8999999995 1 1358899986 47899988653 24899999999
Q ss_pred ECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE-ECCEEEEEecccCCCC--------
Q 006384 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLR-------- 203 (647)
Q Consensus 133 ~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~-------- 203 (647)
+++.|||+||............++++|+||+.+++|+.++. ..|.+|.+|++++ .+++||+|||......
T Consensus 83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~ 161 (376)
T PRK14131 83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLA 161 (376)
T ss_pred ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhh
Confidence 99999999998642111112357899999999999999985 2477888888877 8999999999753100
Q ss_pred ----------------------ceeeeCcEEEEEcCCCceEEeccCCCCCCC-CCceeeeEEEeCCEEEEEecccCCCCC
Q 006384 204 ----------------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWP-SPRSGFQFFVYQDEVFLYGGYSKEVST 260 (647)
Q Consensus 204 ----------------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P-~~R~~~s~~~~~~~Iyv~GG~~~~~~~ 260 (647)
.....+++++||+.+++|+.+.++ | .+|.+|++++++++|||+||....
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~-----p~~~~~~~a~v~~~~~iYv~GG~~~~--- 233 (376)
T PRK14131 162 AAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES-----PFLGTAGSAVVIKGNKLWLINGEIKP--- 233 (376)
T ss_pred hcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC-----CCCCCCcceEEEECCEEEEEeeeECC---
Confidence 001357899999999999998877 5 478899999999999999997543
Q ss_pred cccCCCCCceeeeE--EEEeCCCCeEEEeecCCCCCCCc--------eeeEEEEECCeEEEecceeccccCccccccc--
Q 006384 261 DKNQSEKGIIHSDL--WSLDPRTWEWSKVKKIGMPPGPR--------AGFSMCVHKKRALLFGGVVDMEMKGDVIMSL-- 328 (647)
Q Consensus 261 ~~~~~~~~~~~~dv--~~yd~~t~~W~~v~~~g~~P~~R--------~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~-- 328 (647)
+....++ +.||+.+++|+.+..+ |.+| .++.+++++++|||+||.......++.....
T Consensus 234 -------~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 303 (376)
T PRK14131 234 -------GLRTDAVKQGKFTGNNLKWQKLPDL---PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLY 303 (376)
T ss_pred -------CcCChhheEEEecCCCcceeecCCC---CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcc
Confidence 1222334 4567889999999876 3333 3344677899999999976422110000000
Q ss_pred ------cCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcc
Q 006384 329 ------FLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEME 402 (647)
Q Consensus 329 ------~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 402 (647)
....+++||+.+++|+.+..
T Consensus 304 ~~~~~~~~~~~e~yd~~~~~W~~~~~------------------------------------------------------ 329 (376)
T PRK14131 304 AHEGLKKSWSDEIYALVNGKWQKVGE------------------------------------------------------ 329 (376)
T ss_pred cccCCcceeehheEEecCCcccccCc------------------------------------------------------
Confidence 01347799999999987754
Q ss_pred cccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEee
Q 006384 403 SNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITL 482 (647)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl 482 (647)
+|.+|..++++++++.|||+||....+ ..+
T Consensus 330 -----------------------------------------------lp~~r~~~~av~~~~~iyv~GG~~~~~---~~~ 359 (376)
T PRK14131 330 -----------------------------------------------LPQGLAYGVSVSWNNGVLLIGGETAGG---KAV 359 (376)
T ss_pred -----------------------------------------------CCCCccceEEEEeCCEEEEEcCCCCCC---cEe
Confidence 699999999999999999999975444 358
Q ss_pred cceeccccCCccceE
Q 006384 483 DDLYSLNLSKLDEWK 497 (647)
Q Consensus 483 ~D~~~ldl~~~d~w~ 497 (647)
+|+|.|++.. ..+.
T Consensus 360 ~~v~~~~~~~-~~~~ 373 (376)
T PRK14131 360 SDVTLLSWDG-KKLT 373 (376)
T ss_pred eeEEEEEEcC-CEEE
Confidence 8999998875 4443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=332.80 Aligned_cols=244 Identities=13% Similarity=0.221 Sum_probs=208.5
Q ss_pred eccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEE
Q 006384 59 VEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (647)
Q Consensus 59 ~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (647)
|....++|.+|.+++++++ ++.|||+||.... ....+.+++||+.+++|..++++ |.+|..|++++++++||
T Consensus 284 W~~l~~mp~~r~~~~~a~l---~~~IYviGG~~~~---~~~~~~v~~Yd~~~n~W~~~~~m--~~~R~~~~~~~~~g~IY 355 (557)
T PHA02713 284 YSVISTIPNHIINYASAIV---DNEIIIAGGYNFN---NPSLNKVYKINIENKIHVELPPM--IKNRCRFSLAVIDDTIY 355 (557)
T ss_pred EEECCCCCccccceEEEEE---CCEEEEEcCCCCC---CCccceEEEEECCCCeEeeCCCC--cchhhceeEEEECCEEE
Confidence 4456789999999999999 8999999995211 22468999999999999999875 68999999999999999
Q ss_pred EEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCC--------------c
Q 006384 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR--------------E 204 (647)
Q Consensus 139 v~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~--------------~ 204 (647)
++||.... ..++++++||+.+++|..+++ +|.+|.+|++++++++||++||...... .
T Consensus 356 viGG~~~~------~~~~sve~Ydp~~~~W~~~~~--mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 356 AIGGQNGT------NVERTIECYTMGDDKWKMLPD--MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EECCcCCC------CCCceEEEEECCCCeEEECCC--CCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 99997543 246889999999999999988 8999999999999999999999864210 0
Q ss_pred eeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC-Ce
Q 006384 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WE 283 (647)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~ 283 (647)
...++.+++|||.+++|+.++++ |.+|.++++++++++|||+||++.. ....+.+++|||.+ ++
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m-----~~~r~~~~~~~~~~~IYv~GG~~~~----------~~~~~~ve~Ydp~~~~~ 492 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNF-----WTGTIRPGVVSHKDDIYVVCDIKDE----------KNVKTCIFRYNTNTYNG 492 (557)
T ss_pred ccccceEEEECCCCCeEeecCCC-----CcccccCcEEEECCEEEEEeCCCCC----------CccceeEEEecCCCCCC
Confidence 11368899999999999999988 8899999999999999999998643 12335689999999 89
Q ss_pred EEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 284 WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 284 W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
|+.++++ |.+|.++++++++++||++||..+ ...+.+||+.+++|+.+.+
T Consensus 493 W~~~~~m---~~~r~~~~~~~~~~~iyv~Gg~~~------------~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 493 WELITTT---ESRLSALHTILHDNTIMMLHCYES------------YMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred eeEcccc---CcccccceeEEECCEEEEEeeecc------------eeehhhcCcccccccchhh
Confidence 9999765 889999999999999999999865 2468999999999999887
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=330.93 Aligned_cols=243 Identities=23% Similarity=0.395 Sum_probs=219.0
Q ss_pred eccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEE
Q 006384 59 VEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (647)
Q Consensus 59 ~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (647)
|....++|.+|..++++++ +|.||++||... ....++.+++||+.+++|..+++|+ .+|.+|+++++++.||
T Consensus 313 w~~~a~m~~~r~~~~~~~~---~~~lYv~GG~~~---~~~~l~~ve~YD~~~~~W~~~a~M~--~~R~~~~v~~l~g~iY 384 (571)
T KOG4441|consen 313 WSSLAPMPSPRCRVGVAVL---NGKLYVVGGYDS---GSDRLSSVERYDPRTNQWTPVAPMN--TKRSDFGVAVLDGKLY 384 (571)
T ss_pred EeecCCCCcccccccEEEE---CCEEEEEccccC---CCcccceEEEecCCCCceeccCCcc--CccccceeEEECCEEE
Confidence 4467889999999999999 899999999632 2346799999999999999998865 8999999999999999
Q ss_pred EEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 139 v~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
++||.++. ..++++.+||+.+++|+.+++ |+.+|++|++++++++||++||...... +++++++|||.+
T Consensus 385 avGG~dg~------~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~---~l~sve~YDP~t 453 (571)
T KOG4441|consen 385 AVGGFDGE------KSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSN---CLNSVECYDPET 453 (571)
T ss_pred EEeccccc------cccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEEEEEcCcCCCcc---ccceEEEEcCCC
Confidence 99999854 357999999999999999998 8889999999999999999999876532 799999999999
Q ss_pred CceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCce
Q 006384 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (647)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~ 298 (647)
++|+.+++| +.+|.+++++++++.||++||+++. .....+.+|||.+++|+.+.++ +.+|.
T Consensus 454 ~~W~~~~~M-----~~~R~~~g~a~~~~~iYvvGG~~~~-----------~~~~~VE~ydp~~~~W~~v~~m---~~~rs 514 (571)
T KOG4441|consen 454 NTWTLIAPM-----NTRRSGFGVAVLNGKIYVVGGFDGT-----------SALSSVERYDPETNQWTMVAPM---TSPRS 514 (571)
T ss_pred CceeecCCc-----ccccccceEEEECCEEEEECCccCC-----------CccceEEEEcCCCCceeEcccC---ccccc
Confidence 999999999 8999999999999999999999874 4456699999999999999765 78999
Q ss_pred eeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 299 ~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.++++++++++|++||... ..+++.|..||+.+++|+.+..
T Consensus 515 ~~g~~~~~~~ly~vGG~~~---------~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 515 AVGVVVLGGKLYAVGGFDG---------NNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cccEEEECCEEEEEecccC---------ccccceeEEcCCCCCceeeCCC
Confidence 9999999999999999765 5678999999999999999887
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=281.56 Aligned_cols=264 Identities=25% Similarity=0.455 Sum_probs=225.8
Q ss_pred CCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccC-----------CCCCCcceeEEEEECCE
Q 006384 123 PPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-----------GCPSPRSGHRMVLYKHK 191 (647)
Q Consensus 123 ~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~-----------~~P~~R~~h~~~~~~~~ 191 (647)
+.|..|++++++..||-|||+.+...-. ..---||.+||..+..|+++++. ..|-.|++|+.+.++++
T Consensus 12 PrRVNHAavaVG~riYSFGGYCsGedy~-~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~ 90 (392)
T KOG4693|consen 12 PRRVNHAAVAVGSRIYSFGGYCSGEDYD-AKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK 90 (392)
T ss_pred cccccceeeeecceEEecCCcccccccc-cCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcce
Confidence 5789999999999999999987654321 11124799999999999999871 11678999999999999
Q ss_pred EEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCcee
Q 006384 192 IIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (647)
Q Consensus 192 lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 271 (647)
+||.||.++.. ...|.++.||+++++|.+.... +..|.+|-||+++++++.+|||||+... ...+.
T Consensus 91 ~yvWGGRND~e---gaCN~Ly~fDp~t~~W~~p~v~--G~vPgaRDGHsAcV~gn~MyiFGGye~~---------a~~FS 156 (392)
T KOG4693|consen 91 AYVWGGRNDDE---GACNLLYEFDPETNVWKKPEVE--GFVPGARDGHSACVWGNQMYIFGGYEED---------AQRFS 156 (392)
T ss_pred EEEEcCccCcc---cccceeeeecccccccccccee--eecCCccCCceeeEECcEEEEecChHHH---------HHhhh
Confidence 99999998742 3689999999999999987665 6679999999999999999999999766 34788
Q ss_pred eeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecCC
Q 006384 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKE 351 (647)
Q Consensus 272 ~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~ 351 (647)
++++.||..+.+|+.+...|.||.-|-.|+++++++++|||||+.+....-.+....+.+.|..||+.|..|...+..
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~-- 234 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPEN-- 234 (392)
T ss_pred ccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCC--
Confidence 999999999999999999999999999999999999999999998866555566677889999999999999977541
Q ss_pred CcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCC
Q 006384 352 KSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKP 431 (647)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (647)
T Consensus 235 -------------------------------------------------------------------------------- 234 (392)
T KOG4693|consen 235 -------------------------------------------------------------------------------- 234 (392)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccceEEeccC
Q 006384 432 YESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPA 502 (647)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~~d~w~~~~~~ 502 (647)
.++|.+|..|++.|.++.||||||+...=++ -++|||+||..+ -.|+.|.+.
T Consensus 235 ----------------~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~--HfndLy~FdP~t-~~W~~I~~~ 286 (392)
T KOG4693|consen 235 ----------------TMKPGGRRSHSTFVYNGKMYMFGGYNGTLNV--HFNDLYCFDPKT-SMWSVISVR 286 (392)
T ss_pred ----------------CcCCCcccccceEEEcceEEEecccchhhhh--hhcceeeccccc-chheeeecc
Confidence 1159999999999999999999999865444 479999999998 899998764
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=297.37 Aligned_cols=330 Identities=25% Similarity=0.454 Sum_probs=261.1
Q ss_pred ceEEEEeccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEec-CCCCCCCcceeEEE
Q 006384 53 KKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSPPPRSAHQAV 131 (647)
Q Consensus 53 ~~~~~~~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~-s~~~P~~R~~ha~v 131 (647)
+|+.+.- ...+.|.||.+|.++++ ..-|+||||- +. -....+..||..+++|..-. .+..|++...|.++
T Consensus 18 rWrrV~~-~tGPvPrpRHGHRAVai---kELiviFGGG--NE---GiiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfv 88 (830)
T KOG4152|consen 18 RWRRVQQ-STGPVPRPRHGHRAVAI---KELIVIFGGG--NE---GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFV 88 (830)
T ss_pred ceEEEec-ccCCCCCccccchheee---eeeEEEecCC--cc---cchhhhhhhccccceeecchhcCCCCCchhhcceE
Confidence 4554443 55789999999999999 7889999992 22 26789999999999998433 34578888999999
Q ss_pred EECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC-----CCCcceeEEEEECCEEEEEecccCCCCc--
Q 006384 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-----PSPRSGHRMVLYKHKIIVFGGFYDTLRE-- 204 (647)
Q Consensus 132 ~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-----P~~R~~h~~~~~~~~lyv~GG~~~~~~~-- 204 (647)
..+.+||+|||..... .+.|++|-+-...-.|.++.+... |-||.+|+..+++++.|+|||......+
T Consensus 89 cdGtrilvFGGMvEYG-----kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpk 163 (830)
T KOG4152|consen 89 CDGTRILVFGGMVEYG-----KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPK 163 (830)
T ss_pred ecCceEEEEccEeeec-----cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcc
Confidence 9999999999986553 367898877766667888766432 7899999999999999999998654432
Q ss_pred ---eeeeCcEEEEEcCCC----ceEEeccCCCCCCCCCceeeeEEEe------CCEEEEEecccCCCCCcccCCCCCcee
Q 006384 205 ---VRYYNDLYVFDLDQF----KWQEIKPRFGSMWPSPRSGFQFFVY------QDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (647)
Q Consensus 205 ---~~~~~dv~~yD~~t~----~W~~v~~~~~~~~P~~R~~~s~~~~------~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 271 (647)
.+|+||+|++++.-+ .|...-.. +..|.+|..|+++++ ..++|||||.++ ..+
T Consensus 164 nNvPrYLnDlY~leL~~Gsgvv~W~ip~t~--Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G------------~RL 229 (830)
T KOG4152|consen 164 NNVPRYLNDLYILELRPGSGVVAWDIPITY--GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG------------CRL 229 (830)
T ss_pred cccchhhcceEEEEeccCCceEEEeccccc--CCCCCCcccceeEEEEeccCCcceEEEEccccc------------ccc
Confidence 349999999998743 48765444 567999999999998 458999999975 589
Q ss_pred eeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccC-----ccccccccCCcEEEEECCCCcEEEe
Q 006384 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMK-----GDVIMSLFLNELYGFQLDNHRWYPL 346 (647)
Q Consensus 272 ~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~-----~~~~~~~~~ndl~~yd~~t~~W~~l 346 (647)
.|+|.+|+.+.+|.+....|.+|.||+-|+++++++++|||||....-.. .+.-.-.+.+.+-++|+++..|..|
T Consensus 230 gDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl 309 (830)
T KOG4152|consen 230 GDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETL 309 (830)
T ss_pred cceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeee
Confidence 99999999999999999999999999999999999999999998543221 1223345678899999999999998
Q ss_pred EecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeee
Q 006384 347 ELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAK 426 (647)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (647)
-... .+|+
T Consensus 310 ~~d~------------------------------------~ed~------------------------------------ 317 (830)
T KOG4152|consen 310 LMDT------------------------------------LEDN------------------------------------ 317 (830)
T ss_pred eecc------------------------------------cccc------------------------------------
Confidence 8721 0000
Q ss_pred cCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEee---cCeEEeecceeccccCCcc---ceEEec
Q 006384 427 SGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEI---NDQEITLDDLYSLNLSKLD---EWKCII 500 (647)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~---g~~e~tl~D~~~ldl~~~d---~w~~~~ 500 (647)
-+|.+|.+||++.++..|||+-|...- .+.++..-|||-||..+.. +.+.+.
T Consensus 318 ----------------------tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp~P~~VQL~r 375 (830)
T KOG4152|consen 318 ----------------------TIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPPPPARVQLVR 375 (830)
T ss_pred ----------------------ccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCCCCCceEEEEe
Confidence 069999999999999999999996533 4678999999999988754 344444
Q ss_pred cCCc
Q 006384 501 PASE 504 (647)
Q Consensus 501 ~~~~ 504 (647)
..+-
T Consensus 376 A~tN 379 (830)
T KOG4152|consen 376 ANTN 379 (830)
T ss_pred cccc
Confidence 4443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=317.58 Aligned_cols=271 Identities=18% Similarity=0.263 Sum_probs=222.1
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWML 161 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~y 161 (647)
..+++.||.. . .+..+..|++..++|..++.. | .+..|+++++++.|||+||..... ...+++++|
T Consensus 251 ~~~~~~~g~~---~---~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v~~y 316 (534)
T PHA03098 251 SIIYIHITMS---I---FTYNYITNYSPLSEINTIIDI--H-YVYCFGSVVLNNVIYFIGGMNKNN-----LSVNSVVSY 316 (534)
T ss_pred cceEeecccc---h---hhceeeecchhhhhcccccCc--c-ccccceEEEECCEEEEECCCcCCC-----CeeccEEEE
Confidence 4455556631 1 234566788888999987642 2 345678899999999999986432 246799999
Q ss_pred ECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeE
Q 006384 162 DLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQF 241 (647)
Q Consensus 162 D~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~ 241 (647)
|+.+++|..++. +|.+|.+|++++++++||++||... ...++++++||+.+++|+.++++ |.+|++|++
T Consensus 317 d~~~~~W~~~~~--~~~~R~~~~~~~~~~~lyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~l-----p~~r~~~~~ 385 (534)
T PHA03098 317 DTKTKSWNKVPE--LIYPRKNPGVTVFNNRIYVIGGIYN----SISLNTVESWKPGESKWREEPPL-----IFPRYNPCV 385 (534)
T ss_pred eCCCCeeeECCC--CCcccccceEEEECCEEEEEeCCCC----CEecceEEEEcCCCCceeeCCCc-----CcCCccceE
Confidence 999999999987 7889999999999999999999863 23678999999999999999887 889999999
Q ss_pred EEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccC
Q 006384 242 FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMK 321 (647)
Q Consensus 242 ~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~ 321 (647)
++++++|||+||.... ...++++++||+.+++|+.+.++ |.+|.+|++++++++|||+||......
T Consensus 386 ~~~~~~iYv~GG~~~~----------~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~- 451 (534)
T PHA03098 386 VNVNNLIYVIGGISKN----------DELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGISYIDN- 451 (534)
T ss_pred EEECCEEEEECCcCCC----------CcccceEEEEeCCCCeeeecCCC---CccccCceEEEECCEEEEECCccCCCC-
Confidence 9999999999997543 23468899999999999998764 789999999999999999999764221
Q ss_pred ccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhc
Q 006384 322 GDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEM 401 (647)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 401 (647)
...++.+++||+.+++|+.++.
T Consensus 452 -----~~~~~~v~~yd~~~~~W~~~~~----------------------------------------------------- 473 (534)
T PHA03098 452 -----IKVYNIVESYNPVTNKWTELSS----------------------------------------------------- 473 (534)
T ss_pred -----CcccceEEEecCCCCceeeCCC-----------------------------------------------------
Confidence 1225679999999999998765
Q ss_pred ccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEe
Q 006384 402 ESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEIT 481 (647)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~t 481 (647)
+|.||.++++++.++.|||+||.... ..
T Consensus 474 ------------------------------------------------~~~~r~~~~~~~~~~~iyv~GG~~~~----~~ 501 (534)
T PHA03098 474 ------------------------------------------------LNFPRINASLCIFNNKIYVVGGDKYE----YY 501 (534)
T ss_pred ------------------------------------------------CCcccccceEEEECCEEEEEcCCcCC----cc
Confidence 58889999999999999999998532 23
Q ss_pred ecceeccccCCccceEEeccC
Q 006384 482 LDDLYSLNLSKLDEWKCIIPA 502 (647)
Q Consensus 482 l~D~~~ldl~~~d~w~~~~~~ 502 (647)
+++++.||+.+ +.|+.+...
T Consensus 502 ~~~v~~yd~~~-~~W~~~~~~ 521 (534)
T PHA03098 502 INEIEVYDDKT-NTWTLFCKF 521 (534)
T ss_pred cceeEEEeCCC-CEEEecCCC
Confidence 78999999998 999988653
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=307.36 Aligned_cols=255 Identities=33% Similarity=0.592 Sum_probs=221.9
Q ss_pred CCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEec-CCCCCCCcceeEEEEECCEEEEE
Q 006384 62 NVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSPPPRSAHQAVSWKNYLYIF 140 (647)
Q Consensus 62 ~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~-s~~~P~~R~~ha~v~~~~~iyv~ 140 (647)
....|.+|++|+++.+ ++++|||||........ -.++|+||..+..|.... ....|.+|++|++++++++||+|
T Consensus 54 ~~~~p~~R~~hs~~~~---~~~~~vfGG~~~~~~~~--~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lf 128 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLI---GNKLYVFGGYGSGDRLT--DLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLF 128 (482)
T ss_pred CCCCcchhhccceeEE---CCEEEEECCCCCCCccc--cceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEE
Confidence 4568999999999999 89999999964322211 116999999999998654 45578899999999999999999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC-CCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
||.... ..++++++.||+.|++|..+.+.+. |.+|.+|++++++++||||||...... .+|++|+||+.+.
T Consensus 129 GG~~~~-----~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~---~~ndl~i~d~~~~ 200 (482)
T KOG0379|consen 129 GGTDKK-----YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD---SLNDLHIYDLETS 200 (482)
T ss_pred ccccCC-----CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc---ceeeeeeeccccc
Confidence 998752 2357999999999999999988776 999999999999999999999876432 7999999999999
Q ss_pred ceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCcee
Q 006384 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (647)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~ 299 (647)
+|.++... +..|.||.+|+++++++++|||||.+.. ..+++|+|+||+.+..|.++...+..|.+|++
T Consensus 201 ~W~~~~~~--g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~ 268 (482)
T KOG0379|consen 201 TWSELDTQ--GEAPSPRYGHAMVVVGNKLLVFGGGDDG----------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSG 268 (482)
T ss_pred cceecccC--CCCCCCCCCceEEEECCeEEEEeccccC----------CceecceEeeecccceeeeccccCCCCCCcce
Confidence 99999887 5669999999999999999999998832 48999999999999999999999999999999
Q ss_pred eEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 300 ~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
|++++.+.+++||||..... ...+.++|.|++.+..|..+..
T Consensus 269 h~~~~~~~~~~l~gG~~~~~-------~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 269 HSLTVSGDHLLLFGGGTDPK-------QEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred eeeEEECCEEEEEcCCcccc-------cccccccccccccccceeeeec
Confidence 99999999999999986520 1258899999999999999987
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=308.29 Aligned_cols=258 Identities=31% Similarity=0.539 Sum_probs=224.5
Q ss_pred CCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC-CCCcceeEEEEECCEEEEEe
Q 006384 118 SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFG 196 (647)
Q Consensus 118 s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-P~~R~~h~~~~~~~~lyv~G 196 (647)
....|.+|.+|+++.+++++|||||........ . .++|+||..+..|......+. |.+|++|.++.++++||+||
T Consensus 54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~---~-~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfG 129 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLT---D-LDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFG 129 (482)
T ss_pred CCCCcchhhccceeEECCEEEEECCCCCCCccc---c-ceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEc
Confidence 345688999999999999999999987665431 1 169999999999999887765 89999999999999999999
Q ss_pred cccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEE
Q 006384 197 GFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (647)
Q Consensus 197 G~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (647)
|.... ...+++++.||+.|.+|..+.+. +.+|++|.+|++++++++||||||.... +..++++|+
T Consensus 130 G~~~~---~~~~~~l~~~d~~t~~W~~l~~~--~~~P~~r~~Hs~~~~g~~l~vfGG~~~~----------~~~~ndl~i 194 (482)
T KOG0379|consen 130 GTDKK---YRNLNELHSLDLSTRTWSLLSPT--GDPPPPRAGHSATVVGTKLVVFGGIGGT----------GDSLNDLHI 194 (482)
T ss_pred cccCC---CCChhheEeccCCCCcEEEecCc--CCCCCCcccceEEEECCEEEEECCccCc----------ccceeeeee
Confidence 98763 23589999999999999999887 4479999999999999999999999876 338999999
Q ss_pred EeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchh
Q 006384 277 LDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKD 356 (647)
Q Consensus 277 yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~ 356 (647)
||+.+.+|.++...|..|.||.+|++++++++++||||.+. ...+++|+|+||+.+..|..+...+.
T Consensus 195 ~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~--------~~~~l~D~~~ldl~~~~W~~~~~~g~----- 261 (482)
T KOG0379|consen 195 YDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD--------GDVYLNDVHILDLSTWEWKLLPTGGD----- 261 (482)
T ss_pred eccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc--------CCceecceEeeecccceeeeccccCC-----
Confidence 99999999999999999999999999999999999999872 15689999999999999996655210
Q ss_pred hhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCcccc
Q 006384 357 KLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKK 436 (647)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (647)
T Consensus 262 -------------------------------------------------------------------------------- 261 (482)
T KOG0379|consen 262 -------------------------------------------------------------------------------- 261 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccceEEeccCC
Q 006384 437 KSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPAS 503 (647)
Q Consensus 437 ~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~~d~w~~~~~~~ 503 (647)
.|.||+.|++++.+++++|+||.... ....|.|+|.|++.+ ..|..+....
T Consensus 262 -------------~p~~R~~h~~~~~~~~~~l~gG~~~~--~~~~l~~~~~l~~~~-~~w~~~~~~~ 312 (482)
T KOG0379|consen 262 -------------LPSPRSGHSLTVSGDHLLLFGGGTDP--KQEPLGDLYGLDLET-LVWSKVESVG 312 (482)
T ss_pred -------------CCCCcceeeeEEECCEEEEEcCCccc--ccccccccccccccc-cceeeeeccc
Confidence 59999999999999999999998643 112699999999997 9999988776
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=310.96 Aligned_cols=238 Identities=18% Similarity=0.308 Sum_probs=200.6
Q ss_pred CcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCC
Q 006384 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPN 148 (647)
Q Consensus 69 R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~ 148 (647)
+..|+++++ ++.|||+||... .....+++++||+.+++|..++++ |.+|.+|++++++++|||+||....
T Consensus 285 ~~~~~~~~~---~~~lyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~~--~~~R~~~~~~~~~~~lyv~GG~~~~-- 354 (534)
T PHA03098 285 VYCFGSVVL---NNVIYFIGGMNK---NNLSVNSVVSYDTKTKSWNKVPEL--IYPRKNPGVTVFNNRIYVIGGIYNS-- 354 (534)
T ss_pred cccceEEEE---CCEEEEECCCcC---CCCeeccEEEEeCCCCeeeECCCC--CcccccceEEEECCEEEEEeCCCCC--
Confidence 445677777 899999999632 223568999999999999998764 5789999999999999999998632
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
..++++++||+.+++|+.+++ +|.+|++|++++++++|||+||..... ..++++++||+.+++|+.++++
T Consensus 355 ----~~~~~v~~yd~~~~~W~~~~~--lp~~r~~~~~~~~~~~iYv~GG~~~~~---~~~~~v~~yd~~t~~W~~~~~~- 424 (534)
T PHA03098 355 ----ISLNTVESWKPGESKWREEPP--LIFPRYNPCVVNVNNLIYVIGGISKND---ELLKTVECFSLNTNKWSKGSPL- 424 (534)
T ss_pred ----EecceEEEEcCCCCceeeCCC--cCcCCccceEEEECCEEEEECCcCCCC---cccceEEEEeCCCCeeeecCCC-
Confidence 246899999999999999987 889999999999999999999975432 2478999999999999999887
Q ss_pred CCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCe
Q 006384 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKR 308 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~ 308 (647)
|.+|.+|++++++++|||+||.... . ....++.+++||+.+++|+.++.+ |.+|.++++++++++
T Consensus 425 ----p~~r~~~~~~~~~~~iyv~GG~~~~--~------~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~ 489 (534)
T PHA03098 425 ----PISHYGGCAIYHDGKIYVIGGISYI--D------NIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCIFNNK 489 (534)
T ss_pred ----CccccCceEEEECCEEEEECCccCC--C------CCcccceEEEecCCCCceeeCCCC---CcccccceEEEECCE
Confidence 8899999999999999999998643 0 112356699999999999999764 678999999999999
Q ss_pred EEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecC
Q 006384 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRK 350 (647)
Q Consensus 309 iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~ 350 (647)
|||+||... ..+.+++++||+.+++|+.+...+
T Consensus 490 iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 490 IYVVGGDKY---------EYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred EEEEcCCcC---------CcccceeEEEeCCCCEEEecCCCc
Confidence 999999865 234688999999999999987643
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=289.26 Aligned_cols=208 Identities=17% Similarity=0.232 Sum_probs=181.7
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
++.||++||.. + ....+.+++|||.+++|..++++ |.+|..|++++++++||++||... .+.+++
T Consensus 271 ~~~lyviGG~~--~--~~~~~~v~~Ydp~~~~W~~~~~m--~~~r~~~~~v~~~~~iYviGG~~~---------~~sve~ 335 (480)
T PHA02790 271 GEVVYLIGGWM--N--NEIHNNAIAVNYISNNWIPIPPM--NSPRLYASGVPANNKLYVVGGLPN---------PTSVER 335 (480)
T ss_pred CCEEEEEcCCC--C--CCcCCeEEEEECCCCEEEECCCC--CchhhcceEEEECCEEEEECCcCC---------CCceEE
Confidence 79999999952 2 22567899999999999999885 589999999999999999999642 256899
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeee
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (647)
||+.+++|..+++ +|.+|.+|++++++++||++||.... .+.+++|||.+++|+.++++ |.+|.+++
T Consensus 336 ydp~~n~W~~~~~--l~~~r~~~~~~~~~g~IYviGG~~~~------~~~ve~ydp~~~~W~~~~~m-----~~~r~~~~ 402 (480)
T PHA02790 336 WFHGDAAWVNMPS--LLKPRCNPAVASINNVIYVIGGHSET------DTTTEYLLPNHDQWQFGPST-----YYPHYKSC 402 (480)
T ss_pred EECCCCeEEECCC--CCCCCcccEEEEECCEEEEecCcCCC------CccEEEEeCCCCEEEeCCCC-----CCccccce
Confidence 9999999999988 89999999999999999999997532 36799999999999999988 88999999
Q ss_pred EEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceecccc
Q 006384 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (647)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~ 320 (647)
+++++++|||+||. +.+|||.+++|+.++++ |.+|.++++++++++||++||.+.
T Consensus 403 ~~~~~~~IYv~GG~-------------------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~--- 457 (480)
T PHA02790 403 ALVFGRRLFLVGRN-------------------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYR--- 457 (480)
T ss_pred EEEECCEEEEECCc-------------------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCC---
Confidence 99999999999983 45899999999999765 789999999999999999999863
Q ss_pred CccccccccCCcEEEEECCCCcEEEeE
Q 006384 321 KGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
....+.+++||+.+++|+...
T Consensus 458 ------~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 458 ------GSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred ------CcccceEEEEECCCCeEEecC
Confidence 223578999999999998754
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=275.13 Aligned_cols=236 Identities=19% Similarity=0.300 Sum_probs=181.7
Q ss_pred EeccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeE----EEecCCCCCCCcceeEEEEE
Q 006384 58 HVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW----KVISSPNSPPPRSAHQAVSW 133 (647)
Q Consensus 58 ~~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W----~~l~s~~~P~~R~~ha~v~~ 133 (647)
.|....++|.+|..++++++ ++.|||+||.. +. ..++++++||+.+++| ..+++ +|.+|..|+++++
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~---~~~lyviGG~~--~~--~~~~~v~~~d~~~~~w~~~~~~~~~--lp~~~~~~~~~~~ 122 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSV---ENGIYYIGGSN--SS--ERFSSVYRITLDESKEELICETIGN--LPFTFENGSACYK 122 (323)
T ss_pred eEEEcccCCccccceEEEEE---CCEEEEEcCCC--CC--CCceeEEEEEEcCCceeeeeeEcCC--CCcCccCceEEEE
Confidence 34456788999998888888 89999999962 22 2468999999999998 45544 5788999999999
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCC-CCcceeEEEEECCEEEEEecccCCCCceeeeCcEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P-~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
+++|||+||.... ..++++++||+.+++|+.+++ +| .+|..|++++++++||||||.... ...+++
T Consensus 123 ~~~iYv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~--~p~~~r~~~~~~~~~~~iYv~GG~~~~-----~~~~~~ 189 (323)
T TIGR03548 123 DGTLYVGGGNRNG------KPSNKSYLFNLETQEWFELPD--FPGEPRVQPVCVKLQNELYVFGGGSNI-----AYTDGY 189 (323)
T ss_pred CCEEEEEeCcCCC------ccCceEEEEcCCCCCeeECCC--CCCCCCCcceEEEECCEEEEEcCCCCc-----cccceE
Confidence 9999999997432 136899999999999999986 55 479999999999999999997532 246789
Q ss_pred EEEcCCCceEEeccCCCCCCCCCceeeeEE-EeCCEEEEEecccCCCCCcc---------------------cCCCCCce
Q 006384 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFF-VYQDEVFLYGGYSKEVSTDK---------------------NQSEKGII 270 (647)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~-~~~~~Iyv~GG~~~~~~~~~---------------------~~~~~~~~ 270 (647)
+||+.+++|+.+++++....|.++.+++.+ +.+++|||+||.+.....+. .......+
T Consensus 190 ~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (323)
T TIGR03548 190 KYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNW 269 (323)
T ss_pred EEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCc
Confidence 999999999999887433345555555544 44799999999864310000 00001123
Q ss_pred eeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceec
Q 006384 271 HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317 (647)
Q Consensus 271 ~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~ 317 (647)
.+++++||+.+++|+.+..+ +..+|.++++++++++||++||...
T Consensus 270 ~~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 270 NRKILIYNVRTGKWKSIGNS--PFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred CceEEEEECCCCeeeEcccc--cccccCchheEEECCEEEEEecccc
Confidence 46799999999999999753 2358999999999999999999754
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=271.24 Aligned_cols=257 Identities=20% Similarity=0.260 Sum_probs=187.2
Q ss_pred ccCCCCC-CCCcceEEEEeccCCCEEEEEcCeecCC--CcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEE-EECC
Q 006384 60 EDNVPAP-SPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV-SWKN 135 (647)
Q Consensus 60 ~~~~~~P-~~R~~~s~~~~~~~~~~lyv~GG~~~~g--~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v-~~~~ 135 (647)
...+++| .+|.+++++++ +++|||+||..... .....++++|+||+.+++|+.++. ..|.+|.+|+++ ++++
T Consensus 44 ~~l~~~p~~~R~~~~~~~~---~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g 119 (346)
T TIGR03547 44 QKIADFPGGPRNQAVAAAI---DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNG 119 (346)
T ss_pred eECCCCCCCCcccceEEEE---CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCC
Confidence 3456777 58999999999 89999999963221 112357899999999999999974 356778888777 6899
Q ss_pred EEEEEeCCcCCCC----------------------------CccccccCcEEEEECCCCcEEEcccCCCCC-CcceeEEE
Q 006384 136 YLYIFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMV 186 (647)
Q Consensus 136 ~iyv~GG~~~~~~----------------------------~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~-~R~~h~~~ 186 (647)
+|||+||...... ......++++++||+.+++|+.+++ +|. +|.+|+++
T Consensus 120 ~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~--~p~~~r~~~~~~ 197 (346)
T TIGR03547 120 QAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE--NPFLGTAGSAIV 197 (346)
T ss_pred EEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc--CCCCcCCCceEE
Confidence 9999999753200 0000124789999999999999987 775 78999999
Q ss_pred EECCEEEEEecccCCCCceeeeCcEEEEE--cCCCceEEeccCCCCC--CCCCceeeeEEEeCCEEEEEecccCCCCCcc
Q 006384 187 LYKHKIIVFGGFYDTLREVRYYNDLYVFD--LDQFKWQEIKPRFGSM--WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262 (647)
Q Consensus 187 ~~~~~lyv~GG~~~~~~~~~~~~dv~~yD--~~t~~W~~v~~~~~~~--~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~ 262 (647)
+++++||||||..... .....++.|+ +.+++|+.+++++... .+..|.+|++++++++|||+||.... ...
T Consensus 198 ~~~~~iyv~GG~~~~~---~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~--~~~ 272 (346)
T TIGR03547 198 HKGNKLLLINGEIKPG---LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFP--GAQ 272 (346)
T ss_pred EECCEEEEEeeeeCCC---ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCC--Cch
Confidence 9999999999985432 1234566665 5678999999883211 12234577788899999999998632 000
Q ss_pred c-----C---CCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEE
Q 006384 263 N-----Q---SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 263 ~-----~---~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
. . ......+..+.+||+.+++|+.+..+ |.+|.++++++++++|||+||.+.. ...+++|+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~--------~~~~~~v~ 341 (346)
T TIGR03547 273 ENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL---PQGLAYGVSVSWNNGVLLIGGENSG--------GKAVTDVY 341 (346)
T ss_pred hhhhcCCccccCCCCceeEeeEEEecCCcccccCCC---CCCceeeEEEEcCCEEEEEeccCCC--------CCEeeeEE
Confidence 0 0 00001234688999999999999765 7889999988999999999998642 34578888
Q ss_pred EEEC
Q 006384 335 GFQL 338 (647)
Q Consensus 335 ~yd~ 338 (647)
.|-+
T Consensus 342 ~~~~ 345 (346)
T TIGR03547 342 LLSW 345 (346)
T ss_pred EEEe
Confidence 7643
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=282.37 Aligned_cols=210 Identities=17% Similarity=0.246 Sum_probs=182.6
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeC
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYN 209 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~ 209 (647)
++..++.||++||.... ...+.+++||+.+++|..+++ +|.+|..|++++++++||++||... .+
T Consensus 267 ~~~~~~~lyviGG~~~~------~~~~~v~~Ydp~~~~W~~~~~--m~~~r~~~~~v~~~~~iYviGG~~~-------~~ 331 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN------EIHNNAIAVNYISNNWIPIPP--MNSPRLYASGVPANNKLYVVGGLPN-------PT 331 (480)
T ss_pred eEEECCEEEEEcCCCCC------CcCCeEEEEECCCCEEEECCC--CCchhhcceEEEECCEEEEECCcCC-------CC
Confidence 34589999999997532 246889999999999999998 8899999999999999999999742 25
Q ss_pred cEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
++++||+.+++|+.++++ |.+|.+|++++++++|||+||.... .+.+.+|||.+++|+.+++
T Consensus 332 sve~ydp~~n~W~~~~~l-----~~~r~~~~~~~~~g~IYviGG~~~~-------------~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 332 SVERWFHGDAAWVNMPSL-----LKPRCNPAVASINNVIYVIGGHSET-------------DTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred ceEEEECCCCeEEECCCC-----CCCCcccEEEEECCEEEEecCcCCC-------------CccEEEEeCCCCEEEeCCC
Confidence 789999999999999988 8899999999999999999997532 2468899999999999877
Q ss_pred CCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCch
Q 006384 290 IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369 (647)
Q Consensus 290 ~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (647)
+ |.+|.++++++++++|||+||. +.+||+.+++|+.+++
T Consensus 394 m---~~~r~~~~~~~~~~~IYv~GG~-----------------~e~ydp~~~~W~~~~~--------------------- 432 (480)
T PHA02790 394 T---YYPHYKSCALVFGRRLFLVGRN-----------------AEFYCESSNTWTLIDD--------------------- 432 (480)
T ss_pred C---CCccccceEEEECCEEEEECCc-----------------eEEecCCCCcEeEcCC---------------------
Confidence 5 7899999999999999999983 4689999999998876
Q ss_pred hhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCc
Q 006384 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIV 449 (647)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (647)
T Consensus 433 -------------------------------------------------------------------------------- 432 (480)
T PHA02790 433 -------------------------------------------------------------------------------- 432 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccceEE
Q 006384 450 KPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKC 498 (647)
Q Consensus 450 ~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~~d~w~~ 498 (647)
+|.||.++++++++++|||+||... . ..++.+..||+.+ |+|.-
T Consensus 433 m~~~r~~~~~~v~~~~IYviGG~~~--~--~~~~~ve~Yd~~~-~~W~~ 476 (480)
T PHA02790 433 PIYPRDNPELIIVDNKLLLIGGFYR--G--SYIDTIEVYNNRT-YSWNI 476 (480)
T ss_pred CCCCccccEEEEECCEEEEECCcCC--C--cccceEEEEECCC-CeEEe
Confidence 7899999999999999999999852 1 2368899999999 99953
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=271.35 Aligned_cols=258 Identities=21% Similarity=0.290 Sum_probs=189.1
Q ss_pred cCCCCC-CCCcceEEEEeccCCCEEEEEcCeecCC--CcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEE-ECCE
Q 006384 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNY 136 (647)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~~~~~~~lyv~GG~~~~g--~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~-~~~~ 136 (647)
..+++| .+|.+++++++ ++.||||||..... .....++++|+||+.+++|+.++++ .|.+|.+|++++ .+++
T Consensus 66 ~l~~~p~~~r~~~~~v~~---~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~~~~ 141 (376)
T PRK14131 66 KIAAFPGGPREQAVAAFI---DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLHNGK 141 (376)
T ss_pred ECCcCCCCCcccceEEEE---CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEeeCCE
Confidence 345555 58999999999 89999999963211 1124678999999999999999853 467788888877 7999
Q ss_pred EEEEeCCcCCCC----------------------------CccccccCcEEEEECCCCcEEEcccCCCCC-CcceeEEEE
Q 006384 137 LYIFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVL 187 (647)
Q Consensus 137 iyv~GG~~~~~~----------------------------~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~-~R~~h~~~~ 187 (647)
|||+||...... ...+...+++++||+.+++|+.+.+ +|. +|.+|+++.
T Consensus 142 IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~--~p~~~~~~~a~v~ 219 (376)
T PRK14131 142 AYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE--SPFLGTAGSAVVI 219 (376)
T ss_pred EEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc--CCCCCCCcceEEE
Confidence 999999753100 0001124789999999999999887 664 788999999
Q ss_pred ECCEEEEEecccCCCCceeeeCcEE--EEEcCCCceEEeccCCCCCCCCCc--------eeeeEEEeCCEEEEEecccCC
Q 006384 188 YKHKIIVFGGFYDTLREVRYYNDLY--VFDLDQFKWQEIKPRFGSMWPSPR--------SGFQFFVYQDEVFLYGGYSKE 257 (647)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~dv~--~yD~~t~~W~~v~~~~~~~~P~~R--------~~~s~~~~~~~Iyv~GG~~~~ 257 (647)
++++|||+||...... ....++ .||+.+++|..++++ |.+| .++.+++++++|||+||....
T Consensus 220 ~~~~iYv~GG~~~~~~---~~~~~~~~~~~~~~~~W~~~~~~-----p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~ 291 (376)
T PRK14131 220 KGNKLWLINGEIKPGL---RTDAVKQGKFTGNNLKWQKLPDL-----PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFP 291 (376)
T ss_pred ECCEEEEEeeeECCCc---CChhheEEEecCCCcceeecCCC-----CCCCcCCcCCccceEeceeECCEEEEeeccCCC
Confidence 9999999999754321 234455 457789999999988 4443 334456789999999998643
Q ss_pred CCCcccCCCCC--------ceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcccccccc
Q 006384 258 VSTDKNQSEKG--------IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLF 329 (647)
Q Consensus 258 ~~~~~~~~~~~--------~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~ 329 (647)
........+ .....+.+||+.+++|+.+..+ |.+|.++++++++++||||||.... ...
T Consensus 292 --~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---p~~r~~~~av~~~~~iyv~GG~~~~--------~~~ 358 (376)
T PRK14131 292 --GARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL---PQGLAYGVSVSWNNGVLLIGGETAG--------GKA 358 (376)
T ss_pred --CChhhhhcCCcccccCCcceeehheEEecCCcccccCcC---CCCccceEEEEeCCEEEEEcCCCCC--------CcE
Confidence 100000000 0113467999999999988654 8899999999999999999997541 245
Q ss_pred CCcEEEEECCCCcEEE
Q 006384 330 LNELYGFQLDNHRWYP 345 (647)
Q Consensus 330 ~ndl~~yd~~t~~W~~ 345 (647)
.++|++|++..+.|+.
T Consensus 359 ~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 359 VSDVTLLSWDGKKLTV 374 (376)
T ss_pred eeeEEEEEEcCCEEEE
Confidence 7899999999887764
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=264.22 Aligned_cols=216 Identities=27% Similarity=0.572 Sum_probs=184.5
Q ss_pred CeEEEec--CCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC-CCCcceeEEEE
Q 006384 111 QEWKVIS--SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVL 187 (647)
Q Consensus 111 ~~W~~l~--s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-P~~R~~h~~~~ 187 (647)
-.|+.+. .++.|.||.+|.++++..-|+||||-+.. ....+.+||..+++|......|. |.+...|+.+.
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG-------iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG-------IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVC 89 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCccc-------chhhhhhhccccceeecchhcCCCCCchhhcceEe
Confidence 3688776 44568889999999999999999996654 56889999999999998776655 88888999999
Q ss_pred ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC--CCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCC
Q 006384 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR--FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (647)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~--~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (647)
.+.+||+|||+...++ |.|++|.+-...-.|.++.+. +.+.+|.||.||++.+++++-|+|||.... ....++
T Consensus 90 dGtrilvFGGMvEYGk---YsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNd--seDpkn 164 (830)
T KOG4152|consen 90 DGTRILVFGGMVEYGK---YSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAND--SEDPKN 164 (830)
T ss_pred cCceEEEEccEeeecc---ccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccc--ccCccc
Confidence 9999999999977654 899998887777888888765 356788999999999999999999999766 445556
Q ss_pred CCCceeeeEEEEeCCC----CeEEEeecCCCCCCCceeeEEEEE------CCeEEEecceeccccCccccccccCCcEEE
Q 006384 266 EKGIIHSDLWSLDPRT----WEWSKVKKIGMPPGPRAGFSMCVH------KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (647)
Q Consensus 266 ~~~~~~~dv~~yd~~t----~~W~~v~~~g~~P~~R~~~s~~~~------~~~iyifGG~~~~~~~~~~~~~~~~ndl~~ 335 (647)
....+++|+|++++.. -.|......|..|.+|-.|+++++ ..+||||||.++ ..+.|||.
T Consensus 165 NvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G----------~RLgDLW~ 234 (830)
T KOG4152|consen 165 NVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG----------CRLGDLWT 234 (830)
T ss_pred ccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc----------ccccceeE
Confidence 6778999999999763 479999888999999999999998 357999999875 56899999
Q ss_pred EECCCCcEEEeEe
Q 006384 336 FQLDNHRWYPLEL 348 (647)
Q Consensus 336 yd~~t~~W~~l~~ 348 (647)
+|+++..|.+...
T Consensus 235 Ldl~Tl~W~kp~~ 247 (830)
T KOG4152|consen 235 LDLDTLTWNKPSL 247 (830)
T ss_pred Eecceeecccccc
Confidence 9999999998877
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.1e-18 Score=169.89 Aligned_cols=258 Identities=20% Similarity=0.289 Sum_probs=188.0
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCC--CeEEEecCCCCCCCcceeEEEEECCEEE
Q 006384 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (647)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~--~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (647)
..+..|.+--+-+-..+ ++.+||-=|. .| ...|..|+.. ..|+.+..-+ -.+|....+++++++||
T Consensus 29 ~lPdlPvg~KnG~Ga~i---g~~~YVGLGs--~G------~afy~ldL~~~~k~W~~~a~Fp-G~~rnqa~~a~~~~kLy 96 (381)
T COG3055 29 QLPDLPVGFKNGAGALI---GDTVYVGLGS--AG------TAFYVLDLKKPGKGWTKIADFP-GGARNQAVAAVIGGKLY 96 (381)
T ss_pred cCCCCCcccccccccee---cceEEEEecc--CC------ccceehhhhcCCCCceEcccCC-CcccccchheeeCCeEE
Confidence 34667877766666667 7889986662 22 3667777765 5899998653 26799999999999999
Q ss_pred EEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC-EEEEEecccCC----------------
Q 006384 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDT---------------- 201 (647)
Q Consensus 139 v~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~-~lyv~GG~~~~---------------- 201 (647)
||||...... .....++++|+||+.+++|.++.+.. |....+|.++.+++ +||++||.+..
T Consensus 97 vFgG~Gk~~~-~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~ 174 (381)
T COG3055 97 VFGGYGKSVS-SSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDK 174 (381)
T ss_pred EeeccccCCC-CCceEeeeeEEecCCCChhheecccc-ccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccH
Confidence 9999865544 23457899999999999999998843 88888999999987 99999998632
Q ss_pred --------------CCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCC
Q 006384 202 --------------LREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (647)
Q Consensus 202 --------------~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~ 267 (647)
..+..+...++.|+|.+++|+.+...| -.++++.+.+.-++.|.++-|.-..
T Consensus 175 ~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p----f~~~aGsa~~~~~n~~~lInGEiKp---------- 240 (381)
T COG3055 175 EAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP----FYGNAGSAVVIKGNKLTLINGEIKP---------- 240 (381)
T ss_pred HHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc----ccCccCcceeecCCeEEEEcceecC----------
Confidence 111235678999999999999987552 4677886666668889999998765
Q ss_pred CceeeeEEEEeCC--CCeEEEeecCCCCC----CCceeeEEEEECCeEEEecceeccccCc----------cccccccCC
Q 006384 268 GIIHSDLWSLDPR--TWEWSKVKKIGMPP----GPRAGFSMCVHKKRALLFGGVVDMEMKG----------DVIMSLFLN 331 (647)
Q Consensus 268 ~~~~~dv~~yd~~--t~~W~~v~~~g~~P----~~R~~~s~~~~~~~iyifGG~~~~~~~~----------~~~~~~~~n 331 (647)
+.....+++++.. ..+|..+.....++ ....|+-.-..++.+++.||.+-..... +.+.-.+.+
T Consensus 241 GLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~ 320 (381)
T COG3055 241 GLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNS 320 (381)
T ss_pred CccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhc
Confidence 4556667777764 56899996652222 1223333344578899999876543221 135566778
Q ss_pred cEEEEECCCCcEEEeEe
Q 006384 332 ELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 332 dl~~yd~~t~~W~~l~~ 348 (647)
+||+|| ++.|..+..
T Consensus 321 ~Vy~~d--~g~Wk~~Ge 335 (381)
T COG3055 321 EVYIFD--NGSWKIVGE 335 (381)
T ss_pred eEEEEc--CCceeeecc
Confidence 899999 889998775
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-20 Score=192.49 Aligned_cols=264 Identities=22% Similarity=0.359 Sum_probs=189.5
Q ss_pred CCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCC-CCCCcceeEEEEECC--EEEEE
Q 006384 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSWKN--YLYIF 140 (647)
Q Consensus 64 ~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~-~P~~R~~ha~v~~~~--~iyv~ 140 (647)
.-|..|.+|.++..+- ++-||++|| ++|.+ -+.|+|.|+...+.|..+.... .|..|+.|.+|..-. +||+.
T Consensus 256 ~~p~~RgGHQMV~~~~-~~CiYLYGG--WdG~~--~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLl 330 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQ-TECVYLYGG--WDGTQ--DLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLL 330 (723)
T ss_pred cCccccCcceEEEeCC-CcEEEEecC--cccch--hHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhh
Confidence 4689999999999963 479999999 67755 4689999999999999887554 789999999998854 89999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccC----CCCCCcceeEEEEECCE--EEEEecccCCCCceeeeCcEEEE
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK----GCPSPRSGHRMVLYKHK--IIVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~----~~P~~R~~h~~~~~~~~--lyv~GG~~~~~~~~~~~~dv~~y 214 (647)
|-+..+...+.+..-.|+|+||..++.|..+.-. |.|...+.|.|++...+ ||||||..-.-. ...+..+|.|
T Consensus 331 G~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~-e~~f~GLYaf 409 (723)
T KOG2437|consen 331 GRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCN-EPQFSGLYAF 409 (723)
T ss_pred hhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCC-CccccceEEE
Confidence 9988776665566678999999999999988642 34889999999999877 999999854322 2357889999
Q ss_pred EcCCCceEEeccCCCC-----CCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 215 DLDQFKWQEIKPRFGS-----MWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 215 D~~t~~W~~v~~~~~~-----~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
|+....|..+...... ..-..|.+|+|-.+ +..+|++||.... +-++-.+.|++....=..+
T Consensus 410 ~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~-----------~El~L~f~y~I~~E~~~~~ 478 (723)
T KOG2437|consen 410 NCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK-----------TELNLFFSYDIDSEHVDII 478 (723)
T ss_pred ecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc-----------eEEeehhcceeccccchhh
Confidence 9999999877543111 11246888888776 7899999998765 5566677777544332222
Q ss_pred ec-----CCCCCCCceeeEEEEE---CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 288 KK-----IGMPPGPRAGFSMCVH---KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 288 ~~-----~g~~P~~R~~~s~~~~---~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.. ....|++ ....-+.. .+.|.+.-|........ .....|.+|+|++.++.|..+..
T Consensus 479 s~~~k~dsS~~pS~-~f~qRs~~dp~~~~i~~~~G~~~~~~~~---e~~~rns~wi~~i~~~~w~cI~~ 543 (723)
T KOG2437|consen 479 SDGTKKDSSMVPST-GFTQRATIDPELNEIHVLSGLSKDKEKR---EENVRNSFWIYDIVRNSWSCIYK 543 (723)
T ss_pred hccCcCccccCCCc-chhhhcccCCCCcchhhhcccchhccCc---cccccCcEEEEEecccchhhHhh
Confidence 11 0112222 11111222 35566655554322211 13357899999999999987765
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=147.37 Aligned_cols=253 Identities=20% Similarity=0.289 Sum_probs=177.3
Q ss_pred CCCCCcceEEEEeccCCCEEEEEcCeecCC-CcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECC-EEEEEeC
Q 006384 65 APSPRSNCSLNINPLKETELILYGGEFYNG-NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGG 142 (647)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g-~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~-~iyv~GG 142 (647)
|-.+|.+...+++ +++||||||..-.. .....++++|+|||.+++|.++... .|....+|+++.+++ .||++||
T Consensus 79 pG~~rnqa~~a~~---~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~-sP~gl~G~~~~~~~~~~i~f~GG 154 (381)
T COG3055 79 PGGARNQAVAAVI---GGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR-SPTGLVGASTFSLNGTKIYFFGG 154 (381)
T ss_pred CCcccccchheee---CCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc-cccccccceeEecCCceEEEEcc
Confidence 4467899999999 89999999974332 2356899999999999999999865 366678888888876 9999999
Q ss_pred CcCC----------------------------CCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEE
Q 006384 143 EFTS----------------------------PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIV 194 (647)
Q Consensus 143 ~~~~----------------------------~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv 194 (647)
.+.. .....+...+.|+.|+|.++.|+.+...+ -.++++++.+.-+++|.+
T Consensus 155 vn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p-f~~~aGsa~~~~~n~~~l 233 (381)
T COG3055 155 VNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP-FYGNAGSAVVIKGNKLTL 233 (381)
T ss_pred ccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc-ccCccCcceeecCCeEEE
Confidence 6322 11123455778999999999999987521 356777666666888999
Q ss_pred EecccCCCCceeeeCcEEEEEcC--CCceEEeccCCCCC--CCCCceeeeEEEeCCEEEEEecccCCCCCccc-------
Q 006384 195 FGGFYDTLREVRYYNDLYVFDLD--QFKWQEIKPRFGSM--WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN------- 263 (647)
Q Consensus 195 ~GG~~~~~~~~~~~~dv~~yD~~--t~~W~~v~~~~~~~--~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~------- 263 (647)
+-|....+- ....+++++.. ..+|..+...+... .+....|+-.-..++.++|.||.... ....
T Consensus 234 InGEiKpGL---Rt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~--Ga~~~y~~Gk~ 308 (381)
T COG3055 234 INGEIKPGL---RTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFP--GALKAYKNGKF 308 (381)
T ss_pred EcceecCCc---cccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCCh--hHHHHHHhccc
Confidence 988755432 24456666665 56799997763211 11233344444458899999987543 1100
Q ss_pred ---CCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 264 ---QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 264 ---~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
..-.-..+.+||.|| .+.|..+ |.+|.++.+-.++..++.||++||.+.. +.....++.+-...
T Consensus 309 ~AH~Gl~K~w~~~Vy~~d--~g~Wk~~---GeLp~~l~YG~s~~~nn~vl~IGGE~~~--------Gka~~~v~~l~~~g 375 (381)
T COG3055 309 YAHEGLSKSWNSEVYIFD--NGSWKIV---GELPQGLAYGVSLSYNNKVLLIGGETSG--------GKATTRVYSLSWDG 375 (381)
T ss_pred ccccchhhhhhceEEEEc--CCceeee---cccCCCccceEEEecCCcEEEEccccCC--------CeeeeeEEEEEEcC
Confidence 111224567899999 8899998 4568888888888889999999998763 34455666655443
|
|
| >PF13422 DUF4110: Domain of unknown function (DUF4110) | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-16 Score=131.41 Aligned_cols=46 Identities=46% Similarity=0.619 Sum_probs=43.4
Q ss_pred HhcCCCCCCCCCCCCCcHHHHHHhhHHHHHHHHHhccc--ccCcEEee
Q 006384 587 ANLGLSDSQRTPMPGESLKDFYRRTSMYWQMAAHEHTQ--HTGKVIWF 632 (647)
Q Consensus 587 ~~~~~~~~~~tp~~~e~l~~f~~rt~~~w~~~~~~~~~--~~~~~~~~ 632 (647)
++++++|.+|||+||||||+||+||++||+++|+++++ ++||+||-
T Consensus 1 ~~~~~~d~~ptP~p~EsLr~Ff~RT~~~W~~~a~~~~~~~~~~KeLrk 48 (96)
T PF13422_consen 1 EQPDLDDWLPTPKPFESLRDFFARTSEYWQEWAIESNRDAHRGKELRK 48 (96)
T ss_pred CCCCCccCCCCCCCCCcHHHHHHHhHHHHHHHHHHccccccchHHHHH
Confidence 36899999999999999999999999999999999999 88999984
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.5e-15 Score=153.72 Aligned_cols=207 Identities=26% Similarity=0.461 Sum_probs=156.8
Q ss_pred CCeEEEecCC--------CCCCCcceeEEEEEC--CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCC-CCC
Q 006384 110 KQEWKVISSP--------NSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS 178 (647)
Q Consensus 110 ~~~W~~l~s~--------~~P~~R~~ha~v~~~--~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~-~P~ 178 (647)
+-.|.+++.. ..|..|.+|++|... +.||++||.++.. -+.|+|.|+...+.|+.+...+ .|.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~------~l~DFW~Y~v~e~~W~~iN~~t~~PG 311 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ------DLADFWAYSVKENQWTCINRDTEGPG 311 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch------hHHHHHhhcCCcceeEEeecCCCCCc
Confidence 4567766532 368899999999985 4999999998764 4799999999999999987755 499
Q ss_pred CcceeEEEEECC--EEEEEecccCCCCcee--eeCcEEEEEcCCCceEEeccCCC-CCCCCCceeeeEEEeCCE--EEEE
Q 006384 179 PRSGHRMVLYKH--KIIVFGGFYDTLREVR--YYNDLYVFDLDQFKWQEIKPRFG-SMWPSPRSGFQFFVYQDE--VFLY 251 (647)
Q Consensus 179 ~R~~h~~~~~~~--~lyv~GG~~~~~~~~~--~~~dv~~yD~~t~~W~~v~~~~~-~~~P~~R~~~s~~~~~~~--Iyv~ 251 (647)
.|+.|+|+..-. +||+.|-+-+..+.+. ...|+|+||..++.|..+..... ...|...+.|+|++..++ ||||
T Consensus 312 ~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVf 391 (723)
T KOG2437|consen 312 ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVF 391 (723)
T ss_pred chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEe
Confidence 999999998754 9999999876554332 45799999999999999876532 134888999999999766 9999
Q ss_pred ecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC-----C--CCCCCceeeEEEEE--CCeEEEecceeccccCc
Q 006384 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI-----G--MPPGPRAGFSMCVH--KKRALLFGGVVDMEMKG 322 (647)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~-----g--~~P~~R~~~s~~~~--~~~iyifGG~~~~~~~~ 322 (647)
||..... ....+.-+|.|+.....|..++.- + ..-..|.+|.|-+. +..+|+|||...
T Consensus 392 GGr~~~~--------~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s----- 458 (723)
T KOG2437|consen 392 GGRILTC--------NEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS----- 458 (723)
T ss_pred cCeeccC--------CCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc-----
Confidence 9987551 124566799999999999987431 0 01245888887665 678999999754
Q ss_pred cccccccCCcEEEEECC
Q 006384 323 DVIMSLFLNELYGFQLD 339 (647)
Q Consensus 323 ~~~~~~~~ndl~~yd~~ 339 (647)
.+-++=++.||+.
T Consensus 459 ----~~El~L~f~y~I~ 471 (723)
T KOG2437|consen 459 ----KTELNLFFSYDID 471 (723)
T ss_pred ----ceEEeehhcceec
Confidence 1224445666654
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=82.32 Aligned_cols=50 Identities=42% Similarity=0.591 Sum_probs=44.6
Q ss_pred CcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 124 ~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
||.+|++++++++||||||.... ...++++|+||+.+++|+.+++ ||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~--mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-----GKYSNDVERYDPETNTWEQLPP--MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-----CCccccEEEEcCCCCcEEECCC--CCCCC
Confidence 68999999999999999998774 2357999999999999999988 88887
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-09 Score=81.79 Aligned_cols=50 Identities=40% Similarity=0.833 Sum_probs=44.6
Q ss_pred CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCc
Q 006384 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (647)
||.+|++++++++||||||.... ..+++++++||+.+++|++++++ |.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~m-----p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPPM-----PTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC---CCccccEEEEcCCCCcEEECCCC-----CCCC
Confidence 69999999999999999998764 34789999999999999999988 6665
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-08 Score=76.13 Aligned_cols=49 Identities=39% Similarity=0.786 Sum_probs=41.6
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY 188 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~ 188 (647)
+++||||||...... ..++++|+||+.+++|+++.. +|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~----~~~nd~~~~~~~~~~W~~~~~--~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGG----TRLNDVWVFDLDTNTWTRIGD--LPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCC----CEecCEEEEECCCCEEEECCC--CCCCccceEEEEC
Confidence 578999999874222 368999999999999999955 7999999999874
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.9e-07 Score=88.67 Aligned_cols=195 Identities=18% Similarity=0.229 Sum_probs=118.7
Q ss_pred ceEEEEeccC-CCCCCCCcceEEEE-eccCC--CEEEEEcCeecCCCcceeeCcEEEEECCCCe-EEEec--------CC
Q 006384 53 KKKEVHVEDN-VPAPSPRSNCSLNI-NPLKE--TELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WKVIS--------SP 119 (647)
Q Consensus 53 ~~~~~~~~~~-~~~P~~R~~~s~~~-~~~~~--~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~-W~~l~--------s~ 119 (647)
+.+.+..... .-+|+.|.-+.+.+ .|..+ ...+|-||+..|.. ..+.+|........ =++++ .+
T Consensus 6 kLrp~sFsndSCYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNE---lS~~LY~ls~~s~~cNkK~tl~C~EKeLvG 82 (337)
T PF03089_consen 6 KLRPISFSNDSCYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNE---LSSSLYILSVDSRGCNKKVTLCCQEKELVG 82 (337)
T ss_pred eecceeecCCcccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcc---cccceEEEEeecCCCCceeEEEEecceecC
Confidence 3344444333 46777777666555 33222 24566788755443 67788988776543 11111 24
Q ss_pred CCCCCcceeEEEEE----CCEEEEEeCCcCCCCCc--------cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE
Q 006384 120 NSPPPRSAHQAVSW----KNYLYIFGGEFTSPNQE--------RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL 187 (647)
Q Consensus 120 ~~P~~R~~ha~v~~----~~~iyv~GG~~~~~~~~--------~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~ 187 (647)
..|.+|++|++.++ +..+++|||...-+..+ ...+...|+.+|+.-+.++....+.+....++|.+..
T Consensus 83 dvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvsla 162 (337)
T PF03089_consen 83 DVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLA 162 (337)
T ss_pred CCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEe
Confidence 57999999999877 35689999975433221 1234557899999998887766544567889999999
Q ss_pred ECCEEEEEecccCCCCceeeeCcEEEEEcC--C-CceEEeccCCCCCCCCCceeeeEEEe---CCEEEEEecccCC
Q 006384 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLD--Q-FKWQEIKPRFGSMWPSPRSGFQFFVY---QDEVFLYGGYSKE 257 (647)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~--t-~~W~~v~~~~~~~~P~~R~~~s~~~~---~~~Iyv~GG~~~~ 257 (647)
-++.+|++||..-... .....++++-.+ . .-+-..... +.+.+-.++.+. .+..+|+|||...
T Consensus 163 r~D~VYilGGHsl~sd--~Rpp~l~rlkVdLllGSP~vsC~vl-----~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 163 RNDCVYILGGHSLESD--SRPPRLYRLKVDLLLGSPAVSCTVL-----QGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred cCceEEEEccEEccCC--CCCCcEEEEEEeecCCCceeEEEEC-----CCCceEeeeeEeecCCCceEEEeccccc
Confidence 9999999999864321 122344544322 1 112222222 333444444433 6789999999766
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-08 Score=74.59 Aligned_cols=49 Identities=29% Similarity=0.592 Sum_probs=40.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW 133 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~ 133 (647)
+++||||||... .....++++|+||+.+++|+.++ ..|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~--~~~~~~nd~~~~~~~~~~W~~~~--~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDD--DGGTRLNDVWVFDLDTNTWTRIG--DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCC--CCCCEecCEEEEECCCCEEEECC--CCCCCccceEEEEC
Confidence 479999999642 33457899999999999999994 46899999999874
|
|
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-08 Score=73.83 Aligned_cols=41 Identities=29% Similarity=0.559 Sum_probs=35.5
Q ss_pred CCccccccceeeecCeEEEecceEeecCeEEeecceeccccCC
Q 006384 450 KPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492 (647)
Q Consensus 450 ~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~ 492 (647)
+|.||.+|++++.++.||||||... .....++|+|.|||.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCC
Confidence 4999999999999999999999974 2335699999999975
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.9e-08 Score=101.21 Aligned_cols=88 Identities=20% Similarity=0.314 Sum_probs=75.9
Q ss_pred CCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEE
Q 006384 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (647)
Q Consensus 233 P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyi 311 (647)
+.|+.+++++.+++++|||||.... +...+.+++||+.+.+|......|.+|.+|.||++|++ +++|+|
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~----------~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv 91 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEG----------NTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILV 91 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCC----------ccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEE
Confidence 5688899999999999999997654 34678999999999999999999999999999999999 689999
Q ss_pred ecceeccccCccccccccCCcEEEEECCCC
Q 006384 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
+++... .-.++|.+.++|-
T Consensus 92 ~~~~~~-----------~~~~~w~l~~~t~ 110 (398)
T PLN02772 92 IKKGSA-----------PDDSIWFLEVDTP 110 (398)
T ss_pred EeCCCC-----------CccceEEEEcCCH
Confidence 997654 2367888888763
|
|
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.8e-08 Score=73.13 Aligned_cols=48 Identities=42% Similarity=0.752 Sum_probs=41.1
Q ss_pred CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
||++|++++++++||||||+ .......+.+++++||+.+.+|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~-~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGY-GTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCc-ccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999999 1122345789999999999999999876
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.2e-08 Score=72.10 Aligned_cols=46 Identities=37% Similarity=0.673 Sum_probs=41.3
Q ss_pred CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
||++|++++++++||||||+... ...++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN---NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST---SSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc---CceeeeEEEEeCCCCEEEEcCCC
Confidence 69999999999999999999872 34799999999999999999887
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.4e-08 Score=72.76 Aligned_cols=46 Identities=35% Similarity=0.646 Sum_probs=31.2
Q ss_pred CcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 179 ~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
||.+|+++.+ +++||||||..... ..++++|+||+.+++|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCCC
Confidence 6999999999 58999999997643 4799999999999999999666
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-07 Score=71.12 Aligned_cols=46 Identities=26% Similarity=0.517 Sum_probs=30.0
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecC
Q 006384 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISS 118 (647)
Q Consensus 68 ~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s 118 (647)
||.+|+++.+. ++.||||||...++ ..++++|+||+.+++|+++++
T Consensus 1 pR~~h~~~~~~--~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIG--DNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE---TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEe--CCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCC
Confidence 69999999995 58999999985443 489999999999999999954
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.2e-07 Score=98.63 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=74.7
Q ss_pred CCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEeccc
Q 006384 177 PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYS 255 (647)
Q Consensus 177 P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~ 255 (647)
+.++..|+++.+++++|||||.++.. ...+.|++||+.+..|...+.. +.+|.||.||+++++ +++|+||++..
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~---~~~~~v~i~D~~t~~W~~P~V~--G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGN---TLSIGVQILDKITNNWVSPIVL--GTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCc---cccceEEEEECCCCcEeccccc--CCCCCCCCcceEEEECCceEEEEeCCC
Confidence 56899999999999999999987632 2579999999999999988776 677999999999999 78999999865
Q ss_pred CCCCCcccCCCCCceeeeEEEEeCCCC
Q 006384 256 KEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (647)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (647)
.. -.++|.+...|.
T Consensus 97 ~~-------------~~~~w~l~~~t~ 110 (398)
T PLN02772 97 AP-------------DDSIWFLEVDTP 110 (398)
T ss_pred CC-------------ccceEEEEcCCH
Confidence 43 367999987663
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-07 Score=68.95 Aligned_cols=46 Identities=26% Similarity=0.563 Sum_probs=41.4
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~ 290 (647)
||.+|+++++++.|||+||+... ...++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~----------~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN----------NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST----------SSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc----------CceeeeEEEEeCCCCEEEEcCCC
Confidence 68999999999999999999873 47899999999999999999875
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-07 Score=70.12 Aligned_cols=47 Identities=38% Similarity=0.684 Sum_probs=39.2
Q ss_pred CcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEccc
Q 006384 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (647)
Q Consensus 124 ~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (647)
||.+|++++++++||||||...... ....+++++||+.+++|+.+++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~---~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNG---GSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCC---CcccceeEEEECCCCEEeecCC
Confidence 6899999999999999999911111 2367999999999999999987
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.6e-07 Score=65.40 Aligned_cols=42 Identities=38% Similarity=0.566 Sum_probs=35.2
Q ss_pred CCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC
Q 006384 121 SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN 166 (647)
Q Consensus 121 ~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~ 166 (647)
.|.+|.+|++++++++||||||..... ...++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~----~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNN----NSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCC----CCEECcEEEEECCCC
Confidence 378999999999999999999998522 236899999998763
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.2e-06 Score=81.19 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=75.1
Q ss_pred EEEEEeCCcCCCCCccccccCcEEEEECCCCc--------EEEcccCC-CCCCcceeEEEEE----CCEEEEEecccCCC
Q 006384 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--------WEQLNLKG-CPSPRSGHRMVLY----KHKIIVFGGFYDTL 202 (647)
Q Consensus 136 ~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~--------W~~~~~~~-~P~~R~~h~~~~~----~~~lyv~GG~~~~~ 202 (647)
..+|.||...... ....+|++...+.. +......| .|.+|++|++-++ +...++|||.....
T Consensus 40 ~YlIHGGrTPNNE-----lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P 114 (337)
T PF03089_consen 40 QYLIHGGRTPNNE-----LSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMP 114 (337)
T ss_pred eEEecCCcCCCcc-----cccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCC
Confidence 4667788766533 46778888765443 22222222 3999999999776 33588999986422
Q ss_pred Cc---e-------eeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCC
Q 006384 203 RE---V-------RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (647)
Q Consensus 203 ~~---~-------~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~ 257 (647)
.. + .....|+.+|++-+..+.-... .+-.+.+.|.+.+-++.+|++||..-.
T Consensus 115 ~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp---El~dG~SFHvslar~D~VYilGGHsl~ 176 (337)
T PF03089_consen 115 PGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP---ELQDGQSFHVSLARNDCVYILGGHSLE 176 (337)
T ss_pred ccccchhhcceeccCCCeEEEEeccccccccccch---hhcCCeEEEEEEecCceEEEEccEEcc
Confidence 11 1 1445788889988877654332 224567788888889999999998754
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00033 Score=70.41 Aligned_cols=204 Identities=15% Similarity=0.229 Sum_probs=115.7
Q ss_pred CcEEEEECCCCeEEEecCCCCCCC-ccee-EEEEEC----C-EEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEccc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPP-RSAH-QAVSWK----N-YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~-R~~h-a~v~~~----~-~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (647)
..++++||.|.+|+.++.+..|.. ...+ ....++ . +|+.+...... .....+.+|+..+++|+.+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~------~~~~~~~Vys~~~~~Wr~~~~ 87 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN------RNQSEHQVYTLGSNSWRTIEC 87 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC------CCCccEEEEEeCCCCcccccc
Confidence 368999999999999986432211 1111 111121 1 34444332111 012468899999999999874
Q ss_pred CCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEE-eccCCCCCCCCCceeeeEEEeCCEEEEEe
Q 006384 174 KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (647)
Q Consensus 174 ~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~~~~P~~R~~~s~~~~~~~Iyv~G 252 (647)
.. +........+.+++.||-+.-..... ....+..||+.+.+|.. ++.... .........++.++++|.++.
T Consensus 88 ~~-~~~~~~~~~v~~~G~lyw~~~~~~~~----~~~~IvsFDl~~E~f~~~i~~P~~--~~~~~~~~~L~~~~G~L~~v~ 160 (230)
T TIGR01640 88 SP-PHHPLKSRGVCINGVLYYLAYTLKTN----PDYFIVSFDVSSERFKEFIPLPCG--NSDSVDYLSLINYKGKLAVLK 160 (230)
T ss_pred CC-CCccccCCeEEECCEEEEEEEECCCC----CcEEEEEEEcccceEeeeeecCcc--ccccccceEEEEECCEEEEEE
Confidence 22 22122223778899999887532211 11269999999999995 543210 001122345666789988876
Q ss_pred cccCCCCCcccCCCCCceeeeEEEEe-CCCCeEEEeecCCCCCCCcee----eEEEEECCeEEEecceeccccCcccccc
Q 006384 253 GYSKEVSTDKNQSEKGIIHSDLWSLD-PRTWEWSKVKKIGMPPGPRAG----FSMCVHKKRALLFGGVVDMEMKGDVIMS 327 (647)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd-~~t~~W~~v~~~g~~P~~R~~----~s~~~~~~~iyifGG~~~~~~~~~~~~~ 327 (647)
..... ..-+||+++ -....|+++-....++.+... ...+..++.|++......
T Consensus 161 ~~~~~------------~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---------- 218 (230)
T TIGR01640 161 QKKDT------------NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---------- 218 (230)
T ss_pred ecCCC------------CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC----------
Confidence 54321 114699986 445679987554322222221 234455788887664210
Q ss_pred ccCCcEEEEECCCC
Q 006384 328 LFLNELYGFQLDNH 341 (647)
Q Consensus 328 ~~~ndl~~yd~~t~ 341 (647)
..-+..||+.++
T Consensus 219 --~~~~~~y~~~~~ 230 (230)
T TIGR01640 219 --PFYIFYYNVGEN 230 (230)
T ss_pred --ceEEEEEeccCC
Confidence 113888998764
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.6e-06 Score=62.44 Aligned_cols=47 Identities=32% Similarity=0.579 Sum_probs=39.7
Q ss_pred EEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC
Q 006384 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH 190 (647)
Q Consensus 136 ~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~ 190 (647)
+|||+||.... ..++++++||+.+++|+.+++ +|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~--~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG------QRLKSVEVYDPETNKWTPLPS--MPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC------ceeeeEEEECCCCCeEccCCC--CCCccccceEEEeCC
Confidence 48999997542 246899999999999999987 899999999988764
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.3e-06 Score=61.89 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=39.5
Q ss_pred EEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECC
Q 006384 247 EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307 (647)
Q Consensus 247 ~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~ 307 (647)
+|||+||.... ..++++++||+.+++|+.++++ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-----------QRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-----------ceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 48999998643 4678999999999999998765 88999999988764
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00039 Score=69.90 Aligned_cols=151 Identities=12% Similarity=0.133 Sum_probs=91.7
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCC----CcEEEcccCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT----NQWEQLNLKGCP 177 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t----~~W~~~~~~~~P 177 (647)
.-..||+.+++++.+....- .=.++|+ +.-++.++++||.... .+.+-.|++.+ ..|...... |.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td-~FCSgg~-~L~dG~ll~tGG~~~G--------~~~ir~~~p~~~~~~~~w~e~~~~-m~ 115 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTD-TFCSGGA-FLPDGRLLQTGGDNDG--------NKAIRIFTPCTSDGTCDWTESPND-MQ 115 (243)
T ss_pred EEEEEecCCCcEEeccCCCC-CcccCcC-CCCCCCEEEeCCCCcc--------ccceEEEecCCCCCCCCceECccc-cc
Confidence 34579999999998764321 1122222 2237899999998653 24566787765 579887653 78
Q ss_pred CCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCC--C---ceEEeccCCCCCCCCCceeeeEEEeCCEEEEE
Q 006384 178 SPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ--F---KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLY 251 (647)
Q Consensus 178 ~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t--~---~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~ 251 (647)
.+|-+.+++.+ +++++|+||... ...+.|.... . .|..+.... ...+...+=+..+.-+++||++
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~--------~t~E~~P~~~~~~~~~~~~~l~~~~-~~~~~nlYP~~~llPdG~lFi~ 186 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNN--------PTYEFWPPKGPGPGPVTLPFLSQTS-DTLPNNLYPFVHLLPDGNLFIF 186 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCC--------CcccccCCccCCCCceeeecchhhh-ccCccccCceEEEcCCCCEEEE
Confidence 89999888776 889999999752 1222232211 1 122221110 0113333333344449999999
Q ss_pred ecccCCCCCcccCCCCCceeeeEEEEeCCCCeE-EEeecC
Q 006384 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW-SKVKKI 290 (647)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W-~~v~~~ 290 (647)
+... ..+||+.++++ ..++.+
T Consensus 187 an~~------------------s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 187 ANRG------------------SIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred EcCC------------------cEEEeCCCCeEEeeCCCC
Confidence 9864 45889999977 455543
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00072 Score=68.02 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=94.1
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC----CceEEeccCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ----FKWQEIKPRFGSM 231 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t----~~W~~v~~~~~~~ 231 (647)
..-..||+.+++++.+.... -.-.++| +..-+++++++||..+. ...+-.|++.+ ..|......
T Consensus 46 a~s~~yD~~tn~~rpl~v~t-d~FCSgg-~~L~dG~ll~tGG~~~G------~~~ir~~~p~~~~~~~~w~e~~~~---- 113 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQT-DTFCSGG-AFLPDGRLLQTGGDNDG------NKAIRIFTPCTSDGTCDWTESPND---- 113 (243)
T ss_pred EEEEEEecCCCcEEeccCCC-CCcccCc-CCCCCCCEEEeCCCCcc------ccceEEEecCCCCCCCCceECccc----
Confidence 44567999999999887521 1122222 23348899999998653 34566677754 568877542
Q ss_pred CCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCC------CCeEEEeecCC-CCCCCceeeEEE
Q 006384 232 WPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR------TWEWSKVKKIG-MPPGPRAGFSMC 303 (647)
Q Consensus 232 ~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~------t~~W~~v~~~g-~~P~~R~~~s~~ 303 (647)
+-.+|...++..+ +++++|+||.... .+.|-|. ...|..+.... ..|...+-+...
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~~----------------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~l 177 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNNP----------------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHL 177 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCCC----------------cccccCCccCCCCceeeecchhhhccCccccCceEEE
Confidence 3678999999888 8999999998633 1222222 12222222110 123333344555
Q ss_pred EECCeEEEecceeccccCccccccccCCcEEEEECCCCcE-EEeEe
Q 006384 304 VHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW-YPLEL 348 (647)
Q Consensus 304 ~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W-~~l~~ 348 (647)
.-+++||+|+.. .-.+||..++++ +.++.
T Consensus 178 lPdG~lFi~an~----------------~s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 178 LPDGNLFIFANR----------------GSIIYDYKTNTVVRTLPD 207 (243)
T ss_pred cCCCCEEEEEcC----------------CcEEEeCCCCeEEeeCCC
Confidence 559999999974 367889999976 56665
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.064 Score=58.48 Aligned_cols=193 Identities=12% Similarity=0.068 Sum_probs=106.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCC------CCCCcceeEEEEECCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN------SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~------~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~ 152 (647)
++.||+.+.. ..+++||..+. .|+.-.... .+.++...+.++.++.||+.+.
T Consensus 69 ~~~vy~~~~~----------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---------- 128 (394)
T PRK11138 69 YNKVYAADRA----------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---------- 128 (394)
T ss_pred CCEEEEECCC----------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----------
Confidence 7899987652 36899998765 587432210 0011222334566888887432
Q ss_pred cccCcEEEEECCCC--cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCC
Q 006384 153 HHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRF 228 (647)
Q Consensus 153 ~~~~dv~~yD~~t~--~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~ 228 (647)
...++.||..++ .|+.-.. .+ ...+-++.++.+|+..+ ...++.||+.+.+ |+.-...+
T Consensus 129 --~g~l~ald~~tG~~~W~~~~~----~~-~~ssP~v~~~~v~v~~~----------~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 129 --KGQVYALNAEDGEVAWQTKVA----GE-ALSRPVVSDGLVLVHTS----------NGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred --CCEEEEEECCCCCCcccccCC----Cc-eecCCEEECCEEEEECC----------CCEEEEEEccCCCEeeeecCCCC
Confidence 146899999876 5865432 11 12223556788887433 2468999998765 87643321
Q ss_pred CCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecC--CCCCCCc---eeeE
Q 006384 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKI--GMPPGPR---AGFS 301 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~--g~~P~~R---~~~s 301 (647)
. ...+...+-++.++.+|+..+ .+ .++.+|+.+. .|+..... +.....| ...+
T Consensus 192 ~---~~~~~~~sP~v~~~~v~~~~~-~g----------------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 192 S---LTLRGESAPATAFGGAIVGGD-NG----------------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred c---ccccCCCCCEEECCEEEEEcC-CC----------------EEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 0 111222233445666666432 22 2677777654 57653211 0000001 1234
Q ss_pred EEEECCeEEEecceeccccCccccccccCCcEEEEECCCC--cEEE
Q 006384 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (647)
Q Consensus 302 ~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (647)
.++.++.+|+.+. ...++.+|+.+. .|+.
T Consensus 252 P~v~~~~vy~~~~---------------~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 252 PVVVGGVVYALAY---------------NGNLVALDLRSGQIVWKR 282 (394)
T ss_pred cEEECCEEEEEEc---------------CCeEEEEECCCCCEEEee
Confidence 4566888887653 135899999876 4764
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.12 Score=56.25 Aligned_cols=170 Identities=15% Similarity=0.128 Sum_probs=95.0
Q ss_pred cEEEEECCCCe--EEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC--cEEEcccCCCC
Q 006384 102 DLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGCP 177 (647)
Q Consensus 102 dl~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~~~P 177 (647)
.++.||+.+.+ |+.-........+...+-++.++.+|+..+. ..++.+|+.++ .|+.-.. .|
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~------------g~v~a~d~~~G~~~W~~~~~--~~ 236 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN------------GRVSAVLMEQGQLIWQQRIS--QP 236 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC------------CEEEEEEccCChhhheeccc--cC
Confidence 58888988764 7754321101112222334446666664331 35778888876 4764321 11
Q ss_pred CC-----c---ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCCCceeeeEEEeCCE
Q 006384 178 SP-----R---SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDE 247 (647)
Q Consensus 178 ~~-----R---~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~ 247 (647)
.. | ...+-++.++.+|+.+. -..++.+|+.+.+ |+.-... + ...++.++.
T Consensus 237 ~~~~~~~~~~~~~~sP~v~~~~vy~~~~----------~g~l~ald~~tG~~~W~~~~~~-------~---~~~~~~~~~ 296 (394)
T PRK11138 237 TGATEIDRLVDVDTTPVVVGGVVYALAY----------NGNLVALDLRSGQIVWKREYGS-------V---NDFAVDGGR 296 (394)
T ss_pred CCccchhcccccCCCcEEECCEEEEEEc----------CCeEEEEECCCCCEEEeecCCC-------c---cCcEEECCE
Confidence 11 1 11234566888887653 1468899998764 8753111 1 124566889
Q ss_pred EEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcccc
Q 006384 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (647)
Q Consensus 248 Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~ 325 (647)
||+.... ..++++|+.+. .|+.-.. ..+...+.++.+++||+...
T Consensus 297 vy~~~~~-----------------g~l~ald~~tG~~~W~~~~~-----~~~~~~sp~v~~g~l~v~~~----------- 343 (394)
T PRK11138 297 IYLVDQN-----------------DRVYALDTRGGVELWSQSDL-----LHRLLTAPVLYNGYLVVGDS----------- 343 (394)
T ss_pred EEEEcCC-----------------CeEEEEECCCCcEEEccccc-----CCCcccCCEEECCEEEEEeC-----------
Confidence 9986532 23888988654 5864321 12233345667888887532
Q ss_pred ccccCCcEEEEECCCCc
Q 006384 326 MSLFLNELYGFQLDNHR 342 (647)
Q Consensus 326 ~~~~~ndl~~yd~~t~~ 342 (647)
-..|+++|+.+.+
T Consensus 344 ----~G~l~~ld~~tG~ 356 (394)
T PRK11138 344 ----EGYLHWINREDGR 356 (394)
T ss_pred ----CCEEEEEECCCCC
Confidence 1348888887754
|
|
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.066 Score=53.68 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=93.1
Q ss_pred CcEEEEECCCCcEEEcccCCCCCC-ccee-EEEEEC----C-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSP-RSGH-RMVLYK----H-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~-R~~h-~~~~~~----~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
..++++||.|++|..++....+.. ...+ ....++ . +++.+...... .....+++|++.++.|+.+...+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~----~~~~~~~Vys~~~~~Wr~~~~~~ 89 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN----RNQSEHQVYTLGSNSWRTIECSP 89 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC----CCCccEEEEEeCCCCccccccCC
Confidence 468899999999999976322101 1111 111221 1 45555432110 12357899999999999987432
Q ss_pred CCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE-eecCCCCCCCc----eeeEEE
Q 006384 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK-VKKIGMPPGPR----AGFSMC 303 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~-v~~~g~~P~~R----~~~s~~ 303 (647)
+........+.+++.||-+.-.... .....|..||+.+.+|.. ++. |..+ ....++
T Consensus 90 ----~~~~~~~~~v~~~G~lyw~~~~~~~-----------~~~~~IvsFDl~~E~f~~~i~~----P~~~~~~~~~~~L~ 150 (230)
T TIGR01640 90 ----PHHPLKSRGVCINGVLYYLAYTLKT-----------NPDYFIVSFDVSSERFKEFIPL----PCGNSDSVDYLSLI 150 (230)
T ss_pred ----CCccccCCeEEECCEEEEEEEECCC-----------CCcEEEEEEEcccceEeeeeec----CccccccccceEEE
Confidence 1111122256679999988743221 111258999999999995 543 3222 234566
Q ss_pred EECCeEEEecceeccccCccccccccCCcEEEEE-CCCCcEEEeEe
Q 006384 304 VHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ-LDNHRWYPLEL 348 (647)
Q Consensus 304 ~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd-~~t~~W~~l~~ 348 (647)
.++++|.++...... ..-+||+++ -....|+++-.
T Consensus 151 ~~~G~L~~v~~~~~~----------~~~~IWvl~d~~~~~W~k~~~ 186 (230)
T TIGR01640 151 NYKGKLAVLKQKKDT----------NNFDLWVLNDAGKQEWSKLFT 186 (230)
T ss_pred EECCEEEEEEecCCC----------CcEEEEEECCCCCCceeEEEE
Confidence 678888887653210 014688886 44567997554
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.58 Score=46.50 Aligned_cols=187 Identities=19% Similarity=0.243 Sum_probs=107.1
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe--EEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
++.||+..+ ...+++||+.+.+ |+.-.. . +.....+..++.||+..+. +.+
T Consensus 36 ~~~v~~~~~----------~~~l~~~d~~tG~~~W~~~~~----~-~~~~~~~~~~~~v~v~~~~------------~~l 88 (238)
T PF13360_consen 36 GGRVYVASG----------DGNLYALDAKTGKVLWRFDLP----G-PISGAPVVDGGRVYVGTSD------------GSL 88 (238)
T ss_dssp TTEEEEEET----------TSEEEEEETTTSEEEEEEECS----S-CGGSGEEEETTEEEEEETT------------SEE
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEeecc----c-cccceeeecccccccccce------------eee
Confidence 788888844 2489999998774 765432 1 1122246778999888631 468
Q ss_pred EEEECCCC--cEEE-cccCCCCC-CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCC
Q 006384 159 WMLDLKTN--QWEQ-LNLKGCPS-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMW 232 (647)
Q Consensus 159 ~~yD~~t~--~W~~-~~~~~~P~-~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~ 232 (647)
+.||..++ .|+. .... .+. .+.....++.++.+|+... ...++.+|+.+++ |..-...+....
T Consensus 89 ~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 89 YALDAKTGKVLWSIYLTSS-PPAGVRSSSSPAVDGDRLYVGTS----------SGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEETTTSCEEEEEEE-SS-CTCSTB--SEEEEETTEEEEEET----------CSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred EecccCCcceeeeeccccc-cccccccccCceEecCEEEEEec----------cCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 99998877 5883 4331 122 2334445555777777653 2568999998765 776543311000
Q ss_pred CC---CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe--EEEeecCCCCCCCceeeEEEEECC
Q 006384 233 PS---PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKK 307 (647)
Q Consensus 233 P~---~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~v~~~g~~P~~R~~~s~~~~~~ 307 (647)
+. .......++.++.||+..+... +..+|..+.. |+.. .. . ........++
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~-----------------~~~~d~~tg~~~w~~~-~~-----~-~~~~~~~~~~ 213 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDGR-----------------VVAVDLATGEKLWSKP-IS-----G-IYSLPSVDGG 213 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTSS-----------------EEEEETTTTEEEEEEC-SS-------ECECEECCCT
T ss_pred ceeeecccccceEEECCEEEEEcCCCe-----------------EEEEECCCCCEEEEec-CC-----C-ccCCceeeCC
Confidence 00 1112333344678888765421 5566888876 8433 21 1 1111344466
Q ss_pred eEEEecceeccccCccccccccCCcEEEEECCCCc--EE
Q 006384 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR--WY 344 (647)
Q Consensus 308 ~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~--W~ 344 (647)
.||+.. . ...|+++|+.+++ |.
T Consensus 214 ~l~~~~-~--------------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 214 TLYVTS-S--------------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEEE-T--------------TTEEEEEETTTTEEEEE
T ss_pred EEEEEe-C--------------CCEEEEEECCCCCEEeE
Confidence 676665 2 2569999999874 65
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.75 Score=49.64 Aligned_cols=169 Identities=17% Similarity=0.119 Sum_probs=89.7
Q ss_pred cEEEEECCCC--eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC--cEEEcccCCCC
Q 006384 102 DLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGCP 177 (647)
Q Consensus 102 dl~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~~~P 177 (647)
.++.+|+.+. .|+.-........+...+.++.++.+| +|.. -..++.+|+.++ .|+.-.. .|
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~-~~~~-----------~g~v~ald~~tG~~~W~~~~~--~~ 221 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVL-VGFA-----------GGKLVALDLQTGQPLWEQRVA--LP 221 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEE-EECC-----------CCEEEEEEccCCCEeeeeccc--cC
Confidence 5888898765 476433211001122233345566554 4332 135888998876 4764321 11
Q ss_pred CCc--------ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCCCceeeeEEEeCCE
Q 006384 178 SPR--------SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDE 247 (647)
Q Consensus 178 ~~R--------~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~ 247 (647)
..+ .....++.++.||+... ...++.||+.+.+ |..-. + ...+.++.++.
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~----------~g~l~a~d~~tG~~~W~~~~-------~---~~~~p~~~~~~ 281 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSY----------QGRVAALDLRSGRVLWKRDA-------S---SYQGPAVDDNR 281 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEc----------CCEEEEEECCCCcEEEeecc-------C---CccCceEeCCE
Confidence 111 12233456778887543 2458899988754 76531 1 11233456888
Q ss_pred EEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcccc
Q 006384 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (647)
Q Consensus 248 Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~ 325 (647)
||+... ++ .++++|+.+. .|+.... ..+...+.++.++.||+.. .
T Consensus 282 vyv~~~-~G----------------~l~~~d~~tG~~~W~~~~~-----~~~~~ssp~i~g~~l~~~~-~---------- 328 (377)
T TIGR03300 282 LYVTDA-DG----------------VVVALDRRSGSELWKNDEL-----KYRQLTAPAVVGGYLVVGD-F---------- 328 (377)
T ss_pred EEEECC-CC----------------eEEEEECCCCcEEEccccc-----cCCccccCEEECCEEEEEe-C----------
Confidence 887642 22 3788887654 6765321 1122233455677777643 2
Q ss_pred ccccCCcEEEEECCCC
Q 006384 326 MSLFLNELYGFQLDNH 341 (647)
Q Consensus 326 ~~~~~ndl~~yd~~t~ 341 (647)
...|+++|+.+.
T Consensus 329 ----~G~l~~~d~~tG 340 (377)
T TIGR03300 329 ----EGYLHWLSREDG 340 (377)
T ss_pred ----CCEEEEEECCCC
Confidence 235888887665
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.72 Score=46.53 Aligned_cols=200 Identities=17% Similarity=0.090 Sum_probs=106.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
++.||+..- ..+.++++++.+..-..+..+ . ..+++.. ++.||+... ..+
T Consensus 11 ~g~l~~~D~---------~~~~i~~~~~~~~~~~~~~~~---~---~~G~~~~~~~g~l~v~~~-------------~~~ 62 (246)
T PF08450_consen 11 DGRLYWVDI---------PGGRIYRVDPDTGEVEVIDLP---G---PNGMAFDRPDGRLYVADS-------------GGI 62 (246)
T ss_dssp TTEEEEEET---------TTTEEEEEETTTTEEEEEESS---S---EEEEEEECTTSEEEEEET-------------TCE
T ss_pred CCEEEEEEc---------CCCEEEEEECCCCeEEEEecC---C---CceEEEEccCCEEEEEEc-------------Cce
Confidence 477777643 124899999999987765542 2 3334444 688888764 335
Q ss_pred EEEECCCCcEEEcccC--CC-CCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCC
Q 006384 159 WMLDLKTNQWEQLNLK--GC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (647)
Q Consensus 159 ~~yD~~t~~W~~~~~~--~~-P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (647)
.++|+.+++++.+... +. +..+.+-.++--++.||+---...... ......++++++. .+.+.+... ..
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~-~~~~g~v~~~~~~-~~~~~~~~~------~~ 134 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS-GIDPGSVYRIDPD-GKVTVVADG------LG 134 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT-CGGSEEEEEEETT-SEEEEEEEE------ES
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc-cccccceEEECCC-CeEEEEecC------cc
Confidence 6679999999888663 11 333444444444778887532211110 0001569999998 665555332 11
Q ss_pred ceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCC--CCeEEEeecCCCCCCC-ceeeEEEEE-CCeE
Q 006384 236 RSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR--TWEWSKVKKIGMPPGP-RAGFSMCVH-KKRA 309 (647)
Q Consensus 236 R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~--t~~W~~v~~~g~~P~~-R~~~s~~~~-~~~i 309 (647)
.-.+++.. +..||+.--.. ..||+|++. ...+.........+.. ...-++++- ++.|
T Consensus 135 -~pNGi~~s~dg~~lyv~ds~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 135 -FPNGIAFSPDGKTLYVADSFN----------------GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp -SEEEEEEETTSSEEEEEETTT----------------TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred -cccceEECCcchheeeccccc----------------ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 11234444 44677743322 338888875 3334432211111222 123345554 6788
Q ss_pred EEecceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 310 yifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
|+..-. .+.|++||+....-..+.
T Consensus 198 ~va~~~--------------~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 198 WVADWG--------------GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEET--------------TTEEEEEETTSCEEEEEE
T ss_pred EEEEcC--------------CCEEEEECCCccEEEEEc
Confidence 886321 246899998744333333
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.91 Score=48.96 Aligned_cols=188 Identities=14% Similarity=0.119 Sum_probs=100.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
++.||+.+.. ..+++||+.+. .|+.-... +...+.++.++.+|+.+. -..+
T Consensus 65 ~~~v~v~~~~----------g~v~a~d~~tG~~~W~~~~~~-----~~~~~p~v~~~~v~v~~~------------~g~l 117 (377)
T TIGR03300 65 GGKVYAADAD----------GTVVALDAETGKRLWRVDLDE-----RLSGGVGADGGLVFVGTE------------KGEV 117 (377)
T ss_pred CCEEEEECCC----------CeEEEEEccCCcEeeeecCCC-----CcccceEEcCCEEEEEcC------------CCEE
Confidence 6777776541 36899998765 48743221 111223444677776432 1468
Q ss_pred EEEECCCCc--EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCC
Q 006384 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPS 234 (647)
Q Consensus 159 ~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~ 234 (647)
+.||+.+++ |+.... .. .....++.++.+|+..+ ...++.||+.+.+ |+.-...+. ..
T Consensus 118 ~ald~~tG~~~W~~~~~----~~-~~~~p~v~~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~~---~~ 179 (377)
T TIGR03300 118 IALDAEDGKELWRAKLS----SE-VLSPPLVANGLVVVRTN----------DGRLTALDAATGERLWTYSRVTPA---LT 179 (377)
T ss_pred EEEECCCCcEeeeeccC----ce-eecCCEEECCEEEEECC----------CCeEEEEEcCCCceeeEEccCCCc---ee
Confidence 999987764 865432 11 12233456777777533 2458999988654 775433210 01
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCC--CCCCCc---eeeEEEEECC
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIG--MPPGPR---AGFSMCVHKK 307 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g--~~P~~R---~~~s~~~~~~ 307 (647)
.+...+.++.++.+| +|...+ .++.+|+.+. .|+.-...+ .....| ...+.++.++
T Consensus 180 ~~~~~sp~~~~~~v~-~~~~~g----------------~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~ 242 (377)
T TIGR03300 180 LRGSASPVIADGGVL-VGFAGG----------------KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG 242 (377)
T ss_pred ecCCCCCEEECCEEE-EECCCC----------------EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC
Confidence 122233445566544 444322 3788887654 676532110 000011 1223445677
Q ss_pred eEEEecceeccccCccccccccCCcEEEEECCCC--cEEE
Q 006384 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (647)
Q Consensus 308 ~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (647)
.+|+... ...++.||+.+. .|..
T Consensus 243 ~vy~~~~---------------~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 243 QVYAVSY---------------QGRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEEEc---------------CCEEEEEECCCCcEEEee
Confidence 7777542 235899998776 3654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.19 Score=53.84 Aligned_cols=195 Identities=19% Similarity=0.205 Sum_probs=111.5
Q ss_pred CCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEE--ECCE-EE
Q 006384 62 NVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNY-LY 138 (647)
Q Consensus 62 ~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~--~~~~-iy 138 (647)
+...|+-+.--++-++| .-.|++++|. ++. -.+|..|-.+|. .+.++. ..++--..+. -+|. ..
T Consensus 207 Na~~ps~~~I~sv~FHp--~~plllvaG~--d~~-----lrifqvDGk~N~--~lqS~~--l~~fPi~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 207 NAAHPSHGGITSVQFHP--TAPLLLVAGL--DGT-----LRIFQVDGKVNP--KLQSIH--LEKFPIQKAEFAPNGHSVI 273 (514)
T ss_pred ccCCcCcCCceEEEecC--CCceEEEecC--CCc-----EEEEEecCccCh--hheeee--eccCccceeeecCCCceEE
Confidence 34567777777788888 6789999994 332 245666666664 444432 1111111111 2444 77
Q ss_pred EEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEE-EEECCEEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRM-VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 139 v~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~-~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
+++|. -.-+|.||+.+.+-.++.+......++-+.. +...+.++++-|.. .-++++...
T Consensus 274 ~~s~r-----------rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---------G~I~lLhak 333 (514)
T KOG2055|consen 274 FTSGR-----------RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---------GHIHLLHAK 333 (514)
T ss_pred Eeccc-----------ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---------ceEEeehhh
Confidence 77774 2458999999999888876432223333333 34455667776753 346777777
Q ss_pred CCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCc
Q 006384 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (647)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R 297 (647)
|+.|.---.+ +-....+++...+..||+.||++ . ||++|+..+.-...-.- -..-
T Consensus 334 T~eli~s~Ki-----eG~v~~~~fsSdsk~l~~~~~~G-e----------------V~v~nl~~~~~~~rf~D---~G~v 388 (514)
T KOG2055|consen 334 TKELITSFKI-----EGVVSDFTFSSDSKELLASGGTG-E----------------VYVWNLRQNSCLHRFVD---DGSV 388 (514)
T ss_pred hhhhhheeee-----ccEEeeEEEecCCcEEEEEcCCc-e----------------EEEEecCCcceEEEEee---cCcc
Confidence 8777533222 33344555555577888888874 3 89999987733222110 1122
Q ss_pred eeeEEEE-ECCeEEEecc
Q 006384 298 AGFSMCV-HKKRALLFGG 314 (647)
Q Consensus 298 ~~~s~~~-~~~~iyifGG 314 (647)
.+.+.|. .++..+..|-
T Consensus 389 ~gts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGS 406 (514)
T ss_pred ceeeeeecCCCceEEecc
Confidence 3444443 4566555553
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.3 Score=43.98 Aligned_cols=176 Identities=22% Similarity=0.257 Sum_probs=100.4
Q ss_pred cEEEEECCCC--eEEEecCCCCCCCcceeE--EEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCc--EEEcccCC
Q 006384 102 DLYRYDVEKQ--EWKVISSPNSPPPRSAHQ--AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG 175 (647)
Q Consensus 102 dl~~yd~~~~--~W~~l~s~~~P~~R~~ha--~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~ 175 (647)
.|.++|+.+. .|+.-.. ....+.. .+..++.+|+..+ ...+++||+.+++ |+.-..
T Consensus 4 ~l~~~d~~tG~~~W~~~~~----~~~~~~~~~~~~~~~~v~~~~~------------~~~l~~~d~~tG~~~W~~~~~-- 65 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLG----PGIGGPVATAVPDGGRVYVASG------------DGNLYALDAKTGKVLWRFDLP-- 65 (238)
T ss_dssp EEEEEETTTTEEEEEEECS----SSCSSEEETEEEETTEEEEEET------------TSEEEEEETTTSEEEEEEECS--
T ss_pred EEEEEECCCCCEEEEEECC----CCCCCccceEEEeCCEEEEEcC------------CCEEEEEECCCCCEEEEeecc--
Confidence 5778888665 4775321 1122222 3446899999843 2679999998875 655432
Q ss_pred CCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eE-EeccCCCCCCCC-CceeeeEEEeCCEEEEE
Q 006384 176 CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQ-EIKPRFGSMWPS-PRSGFQFFVYQDEVFLY 251 (647)
Q Consensus 176 ~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~-~v~~~~~~~~P~-~R~~~s~~~~~~~Iyv~ 251 (647)
.+.....+..++.||+..+ -+.++.||+.+.+ |+ .....+ +. .+......+.++.+|+.
T Consensus 66 ---~~~~~~~~~~~~~v~v~~~----------~~~l~~~d~~tG~~~W~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 128 (238)
T PF13360_consen 66 ---GPISGAPVVDGGRVYVGTS----------DGSLYALDAKTGKVLWSIYLTSSP----PAGVRSSSSPAVDGDRLYVG 128 (238)
T ss_dssp ---SCGGSGEEEETTEEEEEET----------TSEEEEEETTTSCEEEEEEE-SSC----TCSTB--SEEEEETTEEEEE
T ss_pred ---ccccceeeecccccccccc----------eeeeEecccCCcceeeeecccccc----ccccccccCceEecCEEEEE
Confidence 1222224777889988763 1368999977654 88 444321 22 23334444557777665
Q ss_pred ecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCCCC-------ceeeEEEEECCeEEEecceeccccCc
Q 006384 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGP-------RAGFSMCVHKKRALLFGGVVDMEMKG 322 (647)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P~~-------R~~~s~~~~~~~iyifGG~~~~~~~~ 322 (647)
.. .+ .++++|+.+. .|...... ++.. ......++.++.+|++.+..
T Consensus 129 ~~-~g----------------~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------ 183 (238)
T PF13360_consen 129 TS-SG----------------KLVALDPKTGKLLWKYPVGE--PRGSSPISSFSDINGSPVISDGRVYVSSGDG------ 183 (238)
T ss_dssp ET-CS----------------EEEEEETTTTEEEEEEESST--T-SS--EEEETTEEEEEECCTTEEEEECCTS------
T ss_pred ec-cC----------------cEEEEecCCCcEEEEeecCC--CCCCcceeeecccccceEEECCEEEEEcCCC------
Confidence 53 22 3889998765 57765422 1111 11233344467788776531
Q ss_pred cccccccCCcEEEEECCCCc--EEEe
Q 006384 323 DVIMSLFLNELYGFQLDNHR--WYPL 346 (647)
Q Consensus 323 ~~~~~~~~ndl~~yd~~t~~--W~~l 346 (647)
.+..+|+.++. |...
T Consensus 184 ---------~~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 184 ---------RVVAVDLATGEKLWSKP 200 (238)
T ss_dssp ---------SEEEEETTTTEEEEEEC
T ss_pred ---------eEEEEECCCCCEEEEec
Confidence 26777999886 7433
|
... |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.69 Score=47.86 Aligned_cols=127 Identities=17% Similarity=0.299 Sum_probs=78.2
Q ss_pred EEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 139 v~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
++||.+..... -....+..||+.+.+|..+... ..-.-+.+... +++||+.|-+.-... -...+-.||+.
T Consensus 2 ~VGG~F~~aGs---L~C~~lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~---~~~~la~yd~~ 72 (281)
T PF12768_consen 2 YVGGSFTSAGS---LPCPGLCLYDTDNSQWSSPGNG---ISGTVTDLQWASNNQLLVGGNFTLNGT---NSSNLATYDFK 72 (281)
T ss_pred EEeeecCCCCC---cCCCEEEEEECCCCEeecCCCC---ceEEEEEEEEecCCEEEEEEeeEECCC---CceeEEEEecC
Confidence 56776655432 1257899999999999998762 11122334444 778888886654331 24568899999
Q ss_pred CCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
+.+|+.+.......+|.|.....+... ...+++.|..... ..-+..| ...+|..+..
T Consensus 73 ~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g-------------~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 73 NQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG-------------STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC-------------CceEEEE--cCCceEeccc
Confidence 999999877422334555433333333 4567777765211 2235666 4567888865
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.3 Score=52.33 Aligned_cols=150 Identities=23% Similarity=0.301 Sum_probs=89.2
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC-CCCcceeEEEEECCE-EEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHK-IIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-P~~R~~h~~~~~~~~-lyv~GG~~~~~~~~~~~~dv 211 (647)
.-.|.+.+|.+.. -.+|..|-++|. .+...-+ -.|...... .-++. .++++|. ..-+
T Consensus 224 ~~plllvaG~d~~---------lrifqvDGk~N~--~lqS~~l~~fPi~~a~f-~p~G~~~i~~s~r---------rky~ 282 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---------LRIFQVDGKVNP--KLQSIHLEKFPIQKAEF-APNGHSVIFTSGR---------RKYL 282 (514)
T ss_pred CCceEEEecCCCc---------EEEEEecCccCh--hheeeeeccCccceeee-cCCCceEEEeccc---------ceEE
Confidence 3568888887543 457777777775 3332101 112222111 22444 7777775 3457
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCceeeeE-EEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC
Q 006384 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQF-FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (647)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~-~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~ 290 (647)
|.||+.+.+-+++.++-+- + .++-+.+ +...+.++++-|..+. |+.+...++.|..--.+
T Consensus 283 ysyDle~ak~~k~~~~~g~--e-~~~~e~FeVShd~~fia~~G~~G~----------------I~lLhakT~eli~s~Ki 343 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGV--E-EKSMERFEVSHDSNFIAIAGNNGH----------------IHLLHAKTKELITSFKI 343 (514)
T ss_pred EEeeccccccccccCCCCc--c-cchhheeEecCCCCeEEEcccCce----------------EEeehhhhhhhhheeee
Confidence 9999999999998876321 2 2222223 3346667777777665 77888888777543222
Q ss_pred CCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 291 GMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 291 g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
+..-..++....+..||+.||. ..||+||+..+
T Consensus 344 ---eG~v~~~~fsSdsk~l~~~~~~---------------GeV~v~nl~~~ 376 (514)
T KOG2055|consen 344 ---EGVVSDFTFSSDSKELLASGGT---------------GEVYVWNLRQN 376 (514)
T ss_pred ---ccEEeeEEEecCCcEEEEEcCC---------------ceEEEEecCCc
Confidence 2222333334446678888885 35999999877
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.59 Score=49.98 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=75.1
Q ss_pred EEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCC
Q 006384 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (647)
Q Consensus 186 ~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (647)
++.+++|+..+.. ..+.+||+.+..-...+.+ +.+.....++.+++.||++...... ......
T Consensus 73 al~gskIv~~d~~----------~~t~vyDt~t~av~~~P~l-----~~pk~~pisv~VG~~LY~m~~~~~~--~~~~~~ 135 (342)
T PF07893_consen 73 ALHGSKIVAVDQS----------GRTLVYDTDTRAVATGPRL-----HSPKRCPISVSVGDKLYAMDRSPFP--EPAGRP 135 (342)
T ss_pred EecCCeEEEEcCC----------CCeEEEECCCCeEeccCCC-----CCCCcceEEEEeCCeEEEeeccCcc--ccccCc
Confidence 3358899988653 3378999999877755554 4444555666668889999887543 000000
Q ss_pred CCCceeeeEEEEe--------CCCCeEEEeecCCCCCCCce-------eeEEEEE-CCeEEE-ecceeccccCccccccc
Q 006384 266 EKGIIHSDLWSLD--------PRTWEWSKVKKIGMPPGPRA-------GFSMCVH-KKRALL-FGGVVDMEMKGDVIMSL 328 (647)
Q Consensus 266 ~~~~~~~dv~~yd--------~~t~~W~~v~~~g~~P~~R~-------~~s~~~~-~~~iyi-fGG~~~~~~~~~~~~~~ 328 (647)
....-++..|+ .....|..+++. |-.+. -.+-+++ +..|+| +-|..
T Consensus 136 --~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P---Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------------ 198 (342)
T PF07893_consen 136 --DFPCFEALVYRPPPDDPSPEESWSWRSLPPP---PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------------ 198 (342)
T ss_pred --cceeEEEeccccccccccCCCcceEEcCCCC---CccccCCcccceEEEEEEecCCeEEEEecCCc------------
Confidence 00022233333 345678887542 32221 2344555 566776 43321
Q ss_pred cCCcEEEEECCCCcEEEeEe
Q 006384 329 FLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 329 ~~ndl~~yd~~t~~W~~l~~ 348 (647)
.-.|.||+.+.+|+.+..
T Consensus 199 --~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 199 --WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred --eEEEEEEcCCcceeeccc
Confidence 138999999999999854
|
|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.8 Score=42.14 Aligned_cols=148 Identities=22% Similarity=0.357 Sum_probs=75.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe--EEEecCCCCC-CCcceeEEEEEC--CEEEEEeCCcCCCCCcccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSP-PPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHY 155 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~--W~~l~s~~~P-~~R~~ha~v~~~--~~iyv~GG~~~~~~~~~~~~~ 155 (647)
.+++|+|-|. .+|+|+..... -+.+... .| .|..-.++.... +++|+|-|
T Consensus 16 ~g~~y~FkG~-----------~~w~~~~~~~~~~p~~I~~~-w~~~p~~IDAa~~~~~~~~~yfFkg------------- 70 (194)
T cd00094 16 RGELYFFKGR-----------YFWRLSPGKPPGSPFLISSF-WPSLPSPVDAAFERPDTGKIYFFKG------------- 70 (194)
T ss_pred CCEEEEEeCC-----------EEEEEeCCCCCCCCeEhhhh-CCCCCCCccEEEEECCCCEEEEECC-------------
Confidence 4889999883 56777765221 1222221 11 222233344443 89999977
Q ss_pred CcEEEEECCCCcEE---EcccCCCCC-CcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCC
Q 006384 156 KDFWMLDLKTNQWE---QLNLKGCPS-PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (647)
Q Consensus 156 ~dv~~yD~~t~~W~---~~~~~~~P~-~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (647)
+.+|+|+..+..+. .+...+.|. +..-.++..+ ++++|+|.| +..|+||..+.+...--+...
T Consensus 71 ~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-----------~~y~ry~~~~~~v~~~yP~~i 139 (194)
T cd00094 71 DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-----------DKYWRYDEKTQKMDPGYPKLI 139 (194)
T ss_pred CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-----------CEEEEEeCCCccccCCCCcch
Confidence 46888887642221 111111221 1111233334 579999988 356788876554321101100
Q ss_pred ----CCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe
Q 006384 230 ----SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 230 ----~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
..+|.. ...++...++.+|+|-|. ..|+||..+.+
T Consensus 140 ~~~w~g~p~~-idaa~~~~~~~~yfF~g~------------------~y~~~d~~~~~ 178 (194)
T cd00094 140 ETDFPGVPDK-VDAAFRWLDGYYYFFKGD------------------QYWRFDPRSKE 178 (194)
T ss_pred hhcCCCcCCC-cceeEEeCCCcEEEEECC------------------EEEEEeCccce
Confidence 011222 222222224889999774 37899987665
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=95.00 E-value=2 Score=41.94 Aligned_cols=154 Identities=16% Similarity=0.259 Sum_probs=76.9
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCc--EEEcccCCCC-CCcceeEEEEEC--CEEEEEecccCCCC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP-SPRSGHRMVLYK--HKIIVFGGFYDTLR 203 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~~P-~~R~~h~~~~~~--~~lyv~GG~~~~~~ 203 (647)
+++...+.+|+|-| +.+|+|+..... -..+... -| .+..-.++.... +++|+|-|
T Consensus 11 A~~~~~g~~y~FkG-------------~~~w~~~~~~~~~~p~~I~~~-w~~~p~~IDAa~~~~~~~~~yfFkg------ 70 (194)
T cd00094 11 AVTTLRGELYFFKG-------------RYFWRLSPGKPPGSPFLISSF-WPSLPSPVDAAFERPDTGKIYFFKG------ 70 (194)
T ss_pred eEEEeCCEEEEEeC-------------CEEEEEeCCCCCCCCeEhhhh-CCCCCCCccEEEEECCCCEEEEECC------
Confidence 34445699999987 457888765221 1222221 12 122223344443 79999977
Q ss_pred ceeeeCcEEEEEcCCCceEEeccCCC-CCCCC-CceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCC
Q 006384 204 EVRYYNDLYVFDLDQFKWQEIKPRFG-SMWPS-PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (647)
Q Consensus 204 ~~~~~~dv~~yD~~t~~W~~v~~~~~-~~~P~-~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (647)
+.+|+|+..+..+........ +.++. .....++... ++++|+|-|. ..|+|+..
T Consensus 71 -----~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~------------------~y~ry~~~ 127 (194)
T cd00094 71 -----DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD------------------KYWRYDEK 127 (194)
T ss_pred -----CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC------------------EEEEEeCC
Confidence 357778765422211111100 11111 1122222222 6899999884 26788865
Q ss_pred CCeEEEe-----ec-CCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 281 TWEWSKV-----KK-IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 281 t~~W~~v-----~~-~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
..+...- .. -...|. ..-.+....++++|+|-| +..|+||..+.+
T Consensus 128 ~~~v~~~yP~~i~~~w~g~p~-~idaa~~~~~~~~yfF~g----------------~~y~~~d~~~~~ 178 (194)
T cd00094 128 TQKMDPGYPKLIETDFPGVPD-KVDAAFRWLDGYYYFFKG----------------DQYWRFDPRSKE 178 (194)
T ss_pred CccccCCCCcchhhcCCCcCC-CcceeEEeCCCcEEEEEC----------------CEEEEEeCccce
Confidence 5443210 00 001121 122222223488999988 348999988766
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.76 Score=49.15 Aligned_cols=130 Identities=13% Similarity=0.083 Sum_probs=76.0
Q ss_pred EEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCcee-e
Q 006384 130 AVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVR-Y 207 (647)
Q Consensus 130 ~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~-~ 207 (647)
++++ +++|+..+.. ..+.+||+.+..-...+. ++.+.....++.++++||++........... .
T Consensus 71 F~al~gskIv~~d~~------------~~t~vyDt~t~av~~~P~--l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~ 136 (342)
T PF07893_consen 71 FFALHGSKIVAVDQS------------GRTLVYDTDTRAVATGPR--LHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPD 136 (342)
T ss_pred EEEecCCeEEEEcCC------------CCeEEEECCCCeEeccCC--CCCCCcceEEEEeCCeEEEeeccCccccccCcc
Confidence 3444 8888888653 337799999998776665 5555556677888999999987643211100 0
Q ss_pred eCcEEEE--E--------cCCCceEEeccCCCCCCCCC--ceeeeEEEe-CCEEEE-EecccCCCCCcccCCCCCceeee
Q 006384 208 YNDLYVF--D--------LDQFKWQEIKPRFGSMWPSP--RSGFQFFVY-QDEVFL-YGGYSKEVSTDKNQSEKGIIHSD 273 (647)
Q Consensus 208 ~~dv~~y--D--------~~t~~W~~v~~~~~~~~P~~--R~~~s~~~~-~~~Iyv-~GG~~~~~~~~~~~~~~~~~~~d 273 (647)
...++.+ + ...-.|+.+++.|-...... +.-.+.+++ +..||| .-|.. .-
T Consensus 137 ~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~----------------~G 200 (342)
T PF07893_consen 137 FPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR----------------WG 200 (342)
T ss_pred ceeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc----------------eE
Confidence 0033343 3 12335777766421110000 002344444 667777 33321 12
Q ss_pred EEEEeCCCCeEEEeec
Q 006384 274 LWSLDPRTWEWSKVKK 289 (647)
Q Consensus 274 v~~yd~~t~~W~~v~~ 289 (647)
.|.||..+.+|+++..
T Consensus 201 TysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 201 TYSFDTESHEWRKHGD 216 (342)
T ss_pred EEEEEcCCcceeeccc
Confidence 8899999999999843
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=94.92 E-value=4.5 Score=41.04 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=53.0
Q ss_pred EEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 83 ~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
.+|+.++. -+.+++||+.+++-...-... ..++ +++.. +..+|+.++. .+.+++
T Consensus 2 ~~~~s~~~---------d~~v~~~d~~t~~~~~~~~~~-~~~~---~l~~~~dg~~l~~~~~~-----------~~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEK---------DNTISVIDTATLEVTRTFPVG-QRPR---GITLSKDGKLLYVCASD-----------SDTIQV 57 (300)
T ss_pred cEEEEecC---------CCEEEEEECCCCceEEEEECC-CCCC---ceEECCCCCEEEEEECC-----------CCeEEE
Confidence 46666662 247888898876543322211 1122 22222 3457777653 246889
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
||+.+.+....-.. .+.+ +.+++. ++.+|+.++. .+.+.+||+.+.+
T Consensus 58 ~d~~~~~~~~~~~~-~~~~---~~~~~~~~g~~l~~~~~~---------~~~l~~~d~~~~~ 106 (300)
T TIGR03866 58 IDLATGEVIGTLPS-GPDP---ELFALHPNGKILYIANED---------DNLVTVIDIETRK 106 (300)
T ss_pred EECCCCcEEEeccC-CCCc---cEEEECCCCCEEEEEcCC---------CCeEEEEECCCCe
Confidence 99988776542211 1111 122222 3456665442 2468889988754
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.63 E-value=10 Score=43.08 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=64.0
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCC---CC---CCcceeEEEEECCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN---SP---PPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~---~P---~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~ 152 (647)
++.||+... .+.|+.+|..+. .|+.-.... .+ ........++.+++||+...
T Consensus 69 ~g~vyv~s~----------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---------- 128 (527)
T TIGR03075 69 DGVMYVTTS----------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---------- 128 (527)
T ss_pred CCEEEEECC----------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC----------
Confidence 688887554 236899998875 587543211 00 00111223555778776432
Q ss_pred cccCcEEEEECCCCc--EEEcccCCCCCC--cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEec
Q 006384 153 HHYKDFWMLDLKTNQ--WEQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~~~P~~--R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (647)
-..++.+|..+++ |+.-.. .+.. ....+-++.++.||+-...... .....|+.||..+.+ |+.-.
T Consensus 129 --dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~~----~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 129 --DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGEF----GVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred --CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeeccccc----CCCcEEEEEECCCCceeEeccC
Confidence 1468999998874 765322 1111 1222345668887774321110 123568899998764 76443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=8.6 Score=42.42 Aligned_cols=194 Identities=13% Similarity=0.000 Sum_probs=95.3
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
..+|++|+.+.+.+.++... ......+....+..|++...... ..++|++|+.+.....+... +. .
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~--g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~Lt~~--~~-~ 291 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP--GMTFAPRFSPDGRKVVMSLSQGG---------NTDIYTMDLRSGTTTRLTDS--PA-I 291 (435)
T ss_pred CEEEEEECCCCcEEEeecCC--CcccCcEECCCCCEEEEEEecCC---------CceEEEEECCCCceEEccCC--CC-c
Confidence 47999999999888776421 21111111112345544432211 25799999999887776541 21 1
Q ss_pred ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCC
Q 006384 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (647)
Q Consensus 181 ~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~ 260 (647)
.......-+++.++|..... + ...+|++|+.+...+.+... ...........-+..|++.. ....
T Consensus 292 ~~~~~~spDG~~i~f~s~~~-g-----~~~Iy~~d~~g~~~~~lt~~-----~~~~~~~~~SpdG~~ia~~~-~~~~--- 356 (435)
T PRK05137 292 DTSPSYSPDGSQIVFESDRS-G-----SPQLYVMNADGSNPRRISFG-----GGRYSTPVWSPRGDLIAFTK-QGGG--- 356 (435)
T ss_pred cCceeEcCCCCEEEEEECCC-C-----CCeEEEEECCCCCeEEeecC-----CCcccCeEECCCCCEEEEEE-cCCC---
Confidence 11112222444333432111 1 24789999988877777543 11111111111244444433 2211
Q ss_pred cccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEecceeccccCccccccccCCcEEEEECC
Q 006384 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (647)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (647)
...++++++.+.....+... ... ..... -+++.++|-...... .....||++|+.
T Consensus 357 ----------~~~i~~~d~~~~~~~~lt~~-----~~~-~~p~~spDG~~i~~~~~~~~~--------~~~~~L~~~dl~ 412 (435)
T PRK05137 357 ----------QFSIGVMKPDGSGERILTSG-----FLV-EGPTWAPNGRVIMFFRQTPGS--------GGAPKLYTVDLT 412 (435)
T ss_pred ----------ceEEEEEECCCCceEeccCC-----CCC-CCCeECCCCCEEEEEEccCCC--------CCcceEEEEECC
Confidence 13588889876655544321 111 11122 255655554332100 002469999998
Q ss_pred CCcEEEeE
Q 006384 340 NHRWYPLE 347 (647)
Q Consensus 340 t~~W~~l~ 347 (647)
...-..+.
T Consensus 413 g~~~~~l~ 420 (435)
T PRK05137 413 GRNEREVP 420 (435)
T ss_pred CCceEEcc
Confidence 76655554
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=4.5 Score=44.93 Aligned_cols=147 Identities=10% Similarity=0.108 Sum_probs=78.2
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEEC-CEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+|++|+.+++-..+.. .+.. .......-+ .+|++.....+ ..++|++|+.+.+.+++.... .
T Consensus 242 ~~L~~~dl~tg~~~~lt~--~~g~-~~~~~wSPDG~~La~~~~~~g-------~~~Iy~~dl~tg~~~~lt~~~-----~ 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS--FPGI-NGAPRFSPDGKKLALVLSKDG-------QPEIYVVDIATKALTRITRHR-----A 306 (448)
T ss_pred cEEEEEECCCCCeEEecC--CCCC-cCCeeECCCCCEEEEEEeCCC-------CeEEEEEECCCCCeEECccCC-----C
Confidence 579999999887766654 2211 111111123 45655433221 257999999999888775531 1
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEec
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFG 313 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyifG 313 (647)
.-...+....+..|++.....+ ...+|++|+.+..++++...+.. ..+.++ -+++.++|.
T Consensus 307 ~~~~p~wSpDG~~I~f~s~~~g--------------~~~Iy~~dl~~g~~~~Lt~~g~~-----~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 307 IDTEPSWHPDGKSLIFTSERGG--------------KPQIYRVNLASGKVSRLTFEGEQ-----NLGGSITPDGRSMIMV 367 (448)
T ss_pred CccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEEecCCCC-----CcCeeECCCCCEEEEE
Confidence 1111111112334544432211 14699999998888887532211 111222 245545454
Q ss_pred ceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
+... -...||++|+.+.....+.
T Consensus 368 ~~~~-----------g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 368 NRTN-----------GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred EecC-----------CceEEEEEECCCCCeEEcc
Confidence 3321 1246999999988776654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=11 Score=40.19 Aligned_cols=156 Identities=12% Similarity=0.078 Sum_probs=77.2
Q ss_pred CCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE
Q 006384 110 KQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY 188 (647)
Q Consensus 110 ~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~ 188 (647)
-.+|+.+..+. ..+...+.+..+ ++.+|+.|.. ..+++-+-.-.+|+.+.. +..-..+.+...
T Consensus 118 G~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~g~~------------G~i~~S~DgG~tW~~~~~---~~~g~~~~i~~~ 181 (334)
T PRK13684 118 GKNWTRIPLSE-KLPGSPYLITALGPGTAEMATNV------------GAIYRTTDGGKNWEALVE---DAAGVVRNLRRS 181 (334)
T ss_pred CCCCeEccCCc-CCCCCceEEEEECCCcceeeecc------------ceEEEECCCCCCceeCcC---CCcceEEEEEEC
Confidence 35899886431 122233334444 3456666542 235554445679998875 223344455555
Q ss_pred CCEEEEEecccCCCCceeeeCcEEE-EEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCC
Q 006384 189 KHKIIVFGGFYDTLREVRYYNDLYV-FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSE 266 (647)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~-yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~ 266 (647)
.+..|+..|..+ .++. .+.....|+.+.. +..+.-++++.. ++.++++|... .
T Consensus 182 ~~g~~v~~g~~G---------~i~~s~~~gg~tW~~~~~------~~~~~l~~i~~~~~g~~~~vg~~G-~--------- 236 (334)
T PRK13684 182 PDGKYVAVSSRG---------NFYSTWEPGQTAWTPHQR------NSSRRLQSMGFQPDGNLWMLARGG-Q--------- 236 (334)
T ss_pred CCCeEEEEeCCc---------eEEEEcCCCCCeEEEeeC------CCcccceeeeEcCCCCEEEEecCC-E---------
Confidence 444444443221 2222 2334457998854 333444455444 67788887532 1
Q ss_pred CCceeeeEEEE--eCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecce
Q 006384 267 KGIIHSDLWSL--DPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGV 315 (647)
Q Consensus 267 ~~~~~~dv~~y--d~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~ 315 (647)
.++ +-.-.+|+.+... ........+++++. ++.+|++|..
T Consensus 237 --------~~~~s~d~G~sW~~~~~~-~~~~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 237 --------IRFNDPDDLESWSKPIIP-EITNGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred --------EEEccCCCCCccccccCC-ccccccceeeEEEcCCCCEEEEcCC
Confidence 123 2234589976421 00011222344444 5678888753
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=5.3 Score=44.41 Aligned_cols=149 Identities=10% Similarity=0.022 Sum_probs=78.9
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
..+|++|+.+.+-+.+... +......+...-+..|++...... ..++|++|+.++....+.... ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~--~g~~~~~~wSPDG~~La~~~~~~g---------~~~Iy~~dl~tg~~~~lt~~~---~~ 307 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF--PGINGAPRFSPDGKKLALVLSKDG---------QPEIYVVDIATKALTRITRHR---AI 307 (448)
T ss_pred cEEEEEECCCCCeEEecCC--CCCcCCeeECCCCCEEEEEEeCCC---------CeEEEEEECCCCCeEECccCC---CC
Confidence 4799999998877766542 111111111112445655433211 257999999999888776421 11
Q ss_pred ceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCC
Q 006384 181 SGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (647)
Q Consensus 181 ~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~ 259 (647)
.......-++ +|++.....+ ...+|.+|+.+.++..+.... ... .......-+..|++.+ ....
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~g-------~~~Iy~~dl~~g~~~~Lt~~g----~~~-~~~~~SpDG~~l~~~~-~~~g-- 372 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERGG-------KPQIYRVNLASGKVSRLTFEG----EQN-LGGSITPDGRSMIMVN-RTNG-- 372 (448)
T ss_pred ccceEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEEecCC----CCC-cCeeECCCCCEEEEEE-ecCC--
Confidence 1111112244 4544432211 257999999999998886331 111 1111212244555443 2211
Q ss_pred CcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
...++++|+.+.....+..
T Consensus 373 -----------~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 -----------KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred -----------ceEEEEEECCCCCeEEccC
Confidence 1358999998888776643
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=93.68 E-value=1 Score=46.63 Aligned_cols=112 Identities=17% Similarity=0.288 Sum_probs=69.1
Q ss_pred eCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE
Q 006384 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (647)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (647)
...+..||+.+.+|..+... ..+ .-.++... +++|||.|-.... +.....+-.||..+.+|+.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-----i~G-~V~~l~~~~~~~Llv~G~ft~~----------~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-----ISG-TVTDLQWASNNQLLVGGNFTLN----------GTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-----ceE-EEEEEEEecCCEEEEEEeeEEC----------CCCceeEEEEecCCCeeee
Confidence 67899999999999987654 112 22333333 7778877755433 1134458899999999999
Q ss_pred eecC--CCCCCCceeeEEEEEC-CeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 287 VKKI--GMPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 287 v~~~--g~~P~~R~~~s~~~~~-~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+... ...|.+-...+....+ ..+++.|.... -..-|..| +..+|..+..
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~-----------g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN-----------GSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecC-----------CCceEEEE--cCCceEeccc
Confidence 8762 2345443222222233 45777776421 02235555 6678999887
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=93.53 E-value=16 Score=41.16 Aligned_cols=122 Identities=14% Similarity=0.188 Sum_probs=62.3
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCC--CCCCc-ceeEEEEEC-CEEEEEeCCcCCCCCccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN--SPPPR-SAHQAVSWK-NYLYIFGGEFTSPNQERFHH 154 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~--~P~~R-~~ha~v~~~-~~iyv~GG~~~~~~~~~~~~ 154 (647)
++.||+.... ..++.+|..+. .|+.-.... ...+. .....++.+ +.||+...
T Consensus 61 ~g~vy~~~~~----------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------------ 118 (488)
T cd00216 61 DGDMYFTTSH----------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------------ 118 (488)
T ss_pred CCEEEEeCCC----------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------------
Confidence 7888876541 47899998865 487533211 00010 111223445 77776432
Q ss_pred cCcEEEEECCCC--cEEEcccCCC-CCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEec
Q 006384 155 YKDFWMLDLKTN--QWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (647)
Q Consensus 155 ~~dv~~yD~~t~--~W~~~~~~~~-P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (647)
-..|+.||..+. .|+.-..... +......+.++.++.+|+ |..............++.||..+.+ |+.-.
T Consensus 119 ~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 119 DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 146889998876 4775433110 000112233555666665 4221110000123578999998754 87543
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=10 Score=41.80 Aligned_cols=184 Identities=11% Similarity=-0.016 Sum_probs=93.2
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
..+|++|+.+++-+.+... +......+...-+.+|++...... ..++|++|+.++....+... +. .
T Consensus 228 ~~l~~~dl~~g~~~~l~~~--~g~~~~~~~SpDG~~l~~~~s~~g---------~~~Iy~~d~~~g~~~~lt~~--~~-~ 293 (433)
T PRK04922 228 SAIYVQDLATGQRELVASF--RGINGAPSFSPDGRRLALTLSRDG---------NPEIYVMDLGSRQLTRLTNH--FG-I 293 (433)
T ss_pred cEEEEEECCCCCEEEeccC--CCCccCceECCCCCEEEEEEeCCC---------CceEEEEECCCCCeEECccC--CC-C
Confidence 4689999998887777542 111111111111345554432211 14799999999887766541 11 1
Q ss_pred ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCC
Q 006384 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEV 258 (647)
Q Consensus 181 ~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~ 258 (647)
.......-+++.++|..... + ...+|.+|+.+..+..+... . ......... +..|++..+...
T Consensus 294 ~~~~~~spDG~~l~f~sd~~-g-----~~~iy~~dl~~g~~~~lt~~-----g--~~~~~~~~SpDG~~Ia~~~~~~~-- 358 (433)
T PRK04922 294 DTEPTWAPDGKSIYFTSDRG-G-----RPQIYRVAASGGSAERLTFQ-----G--NYNARASVSPDGKKIAMVHGSGG-- 358 (433)
T ss_pred ccceEECCCCCEEEEEECCC-C-----CceEEEEECCCCCeEEeecC-----C--CCccCEEECCCCCEEEEEECCCC--
Confidence 11111122444334332111 1 24789999988888877643 1 111122222 455555543211
Q ss_pred CCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEEC
Q 006384 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (647)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (647)
. ..++++|+.+.....+...+ . .......-+++.++|..... -...||.+++
T Consensus 359 ----------~--~~I~v~d~~~g~~~~Lt~~~---~--~~~p~~spdG~~i~~~s~~~-----------g~~~L~~~~~ 410 (433)
T PRK04922 359 ----------Q--YRIAVMDLSTGSVRTLTPGS---L--DESPSFAPNGSMVLYATREG-----------GRGVLAAVST 410 (433)
T ss_pred ----------c--eeEEEEECCCCCeEECCCCC---C--CCCceECCCCCEEEEEEecC-----------CceEEEEEEC
Confidence 1 26899999888877664321 1 11111223566666654321 1245888888
Q ss_pred CCC
Q 006384 339 DNH 341 (647)
Q Consensus 339 ~t~ 341 (647)
...
T Consensus 411 ~g~ 413 (433)
T PRK04922 411 DGR 413 (433)
T ss_pred CCC
Confidence 643
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=93.33 E-value=12 Score=40.70 Aligned_cols=147 Identities=11% Similarity=-0.017 Sum_probs=77.7
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
..+|+||+.+.....+.... ......+...-+..|++...... ..++|.+|+.+.....+.... ...
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~--~~~~~~~~spDg~~l~~~~~~~~---------~~~i~~~d~~~~~~~~l~~~~--~~~ 280 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP--GMNGAPAFSPDGSKLAVSLSKDG---------NPDIYVMDLDGKQLTRLTNGP--GID 280 (417)
T ss_pred cEEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEECCCC---------CccEEEEECCCCCEEECCCCC--CCC
Confidence 47899999888766654321 11111111111345655433211 257999999988877775421 111
Q ss_pred ceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCC
Q 006384 181 SGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (647)
Q Consensus 181 ~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~ 258 (647)
.. .....++ +|++.....+ ...+|.+|+.+..+..+.... ......+.. ++..+++......
T Consensus 281 ~~-~~~s~dg~~l~~~s~~~g-------~~~iy~~d~~~~~~~~l~~~~-------~~~~~~~~spdg~~i~~~~~~~~- 344 (417)
T TIGR02800 281 TE-PSWSPDGKSIAFTSDRGG-------SPQIYMMDADGGEVRRLTFRG-------GYNASPSWSPDGDLIAFVHREGG- 344 (417)
T ss_pred CC-EEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEeecCC-------CCccCeEECCCCCEEEEEEccCC-
Confidence 11 1111244 4444332211 247999999988887775431 111222222 4555555543321
Q ss_pred CCcccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
...++.+|+.+..++.+.
T Consensus 345 ------------~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 345 ------------GFNIAVMDLDGGGERVLT 362 (417)
T ss_pred ------------ceEEEEEeCCCCCeEEcc
Confidence 235899999887666654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=93.06 E-value=2.1 Score=43.56 Aligned_cols=111 Identities=20% Similarity=0.296 Sum_probs=77.3
Q ss_pred EEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcc
Q 006384 184 RMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262 (647)
Q Consensus 184 ~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~ 262 (647)
+... .++.||.--|.++ .+.+..||+.+++-...... |..-+|-++++++++||.+--..+.
T Consensus 49 GL~~~~~g~LyESTG~yG-------~S~l~~~d~~tg~~~~~~~l-----~~~~FgEGit~~~d~l~qLTWk~~~----- 111 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG-------QSSLRKVDLETGKVLQSVPL-----PPRYFGEGITILGDKLYQLTWKEGT----- 111 (264)
T ss_dssp EEEEEETTEEEEEECSTT-------EEEEEEEETTTSSEEEEEE------TTT--EEEEEEETTEEEEEESSSSE-----
T ss_pred cEEecCCCEEEEeCCCCC-------cEEEEEEECCCCcEEEEEEC-----CccccceeEEEECCEEEEEEecCCe-----
Confidence 3444 5789999888765 36788999999987766666 6677888999999999999766544
Q ss_pred cCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 263 ~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+++||+.+. +.+... +.+.-|-++|.-+..+|+--|. +.|+.+||.+-+
T Consensus 112 -----------~f~yd~~tl--~~~~~~---~y~~EGWGLt~dg~~Li~SDGS---------------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 112 -----------GFVYDPNTL--KKIGTF---PYPGEGWGLTSDGKRLIMSDGS---------------SRLYFLDPETFK 160 (264)
T ss_dssp -----------EEEEETTTT--EEEEEE---E-SSS--EEEECSSCEEEE-SS---------------SEEEEE-TTT-S
T ss_pred -----------EEEEccccc--eEEEEE---ecCCcceEEEcCCCEEEEECCc---------------cceEEECCcccc
Confidence 889999875 333322 3445778888778888888873 569999998643
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=11 Score=41.50 Aligned_cols=147 Identities=11% Similarity=0.071 Sum_probs=77.5
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P 233 (647)
..+|++|+.++.-..+... +. ........ ++ +|++.....+ ..++|++|+.+...+.+... +
T Consensus 223 ~~l~~~~l~~g~~~~l~~~--~g--~~~~~~~SpDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~lt~~-----~ 286 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNF--EG--LNGAPAWSPDGSKLAFVLSKDG-------NPEIYVMDLASRQLSRVTNH-----P 286 (430)
T ss_pred CEEEEEECCCCCEEEccCC--CC--CcCCeEECCCCCEEEEEEccCC-------CceEEEEECCCCCeEEcccC-----C
Confidence 4799999999887776541 11 11112222 34 4544322111 25799999999988877543 1
Q ss_pred CCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEe
Q 006384 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLF 312 (647)
Q Consensus 234 ~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyif 312 (647)
..-..+....-+..|++.....+ ...+|.+++.+..+.++...+ ........ -+++.++|
T Consensus 287 ~~~~~~~~spDg~~i~f~s~~~g--------------~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 287 AIDTEPFWGKDGRTLYFTSDRGG--------------KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVM 347 (430)
T ss_pred CCcCCeEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEE
Confidence 11111111112345554432111 136899999888888775321 11111222 24444444
Q ss_pred cceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
..... + ...|+++|+.+..++.+..
T Consensus 348 ~~~~~---------~--~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 348 VHRQD---------G--NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred EEccC---------C--ceEEEEEECCCCCEEEccC
Confidence 33221 1 2359999999988776653
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=11 Score=41.71 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=73.5
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+|++|+.++....+.. .+..-. .....-++ +|++.....+ ..++|++|+.+....++... +.
T Consensus 226 ~~i~~~dl~~g~~~~l~~--~~g~~~-~~~~SPDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~Lt~~-----~~ 290 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN--FPGMTF-APRFSPDGRKVVMSLSQGG-------NTDIYTMDLRSGTTTRLTDS-----PA 290 (435)
T ss_pred CEEEEEECCCCcEEEeec--CCCccc-CcEECCCCCEEEEEEecCC-------CceEEEEECCCCceEEccCC-----CC
Confidence 579999999998877754 221111 11122244 4544333211 35799999998887776554 11
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecc
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG 314 (647)
.-........+..|++.....+ ...+|++|+.+...+++... ..+.......-+++.++|..
T Consensus 291 ~~~~~~~spDG~~i~f~s~~~g--------------~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 291 IDTSPSYSPDGSQIVFESDRSG--------------SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred ccCceeEcCCCCEEEEEECCCC--------------CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEE
Confidence 1111111112334443321111 23689999888777776431 11111111112444444432
Q ss_pred eeccccCccccccccCCcEEEEECCCCcEEEe
Q 006384 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (647)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (647)
... . ...|+++|+.+.....+
T Consensus 353 ~~~---------~--~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 353 QGG---------G--QFSIGVMKPDGSGERIL 373 (435)
T ss_pred cCC---------C--ceEEEEEECCCCceEec
Confidence 211 0 24689999876655444
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=18 Score=39.79 Aligned_cols=145 Identities=6% Similarity=-0.027 Sum_probs=77.4
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
..+|++|+.+++-+.+.... . ...+.... +.+|++...... ..++|++|+.+.....+... +.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~--g--~~~~~~~SpDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~~ 287 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE--G--LNGAPAWSPDGSKLAFVLSKDG---------NPEIYVMDLASRQLSRVTNH--PA 287 (430)
T ss_pred CEEEEEECCCCCEEEccCCC--C--CcCCeEECCCCCEEEEEEccCC---------CceEEEEECCCCCeEEcccC--CC
Confidence 47999999988877775421 1 11111221 344544322111 15799999999988877541 11
Q ss_pred CcceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEE--eCCEEEEEeccc
Q 006384 179 PRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV--YQDEVFLYGGYS 255 (647)
Q Consensus 179 ~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~--~~~~Iyv~GG~~ 255 (647)
........-++ +||+.....+ ...+|.+|+.+..+.++.... ........ .+..|++.....
T Consensus 288 -~~~~~~~spDg~~i~f~s~~~g-------~~~iy~~d~~~g~~~~lt~~~-------~~~~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 288 -IDTEPFWGKDGRTLYFTSDRGG-------KPQIYKVNVNGGRAERVTFVG-------NYNARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred -CcCCeEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEeecCC-------CCccceEECCCCCEEEEEEccC
Confidence 11111112244 4554432111 247899999998888875431 11111122 244555443221
Q ss_pred CCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
+ ...++++|+.+...+.+..
T Consensus 353 ~--------------~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 353 G--------------NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred C--------------ceEEEEEECCCCCEEEccC
Confidence 1 1258999999888777754
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=92.70 E-value=9.2 Score=41.59 Aligned_cols=147 Identities=15% Similarity=0.066 Sum_probs=77.9
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..++++|+.++....+.. .+..... ....-++ .|++.....+ ...+|.+|+.+.....+.... .
T Consensus 214 ~~i~v~d~~~g~~~~~~~--~~~~~~~-~~~spDg~~l~~~~~~~~-------~~~i~~~d~~~~~~~~l~~~~-----~ 278 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS--FPGMNGA-PAFSPDGSKLAVSLSKDG-------NPDIYVMDLDGKQLTRLTNGP-----G 278 (417)
T ss_pred cEEEEEECCCCCEEEeec--CCCCccc-eEECCCCCEEEEEECCCC-------CccEEEEECCCCCEEECCCCC-----C
Confidence 569999999887666543 1211111 1112243 4555433211 257999999988877775431 1
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEec
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFG 313 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyifG 313 (647)
..........+..|++...... ...+|++++.+..+.++...+ ......+. -+++.+++.
T Consensus 279 ~~~~~~~s~dg~~l~~~s~~~g--------------~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 279 IDTEPSWSPDGKSIAFTSDRGG--------------SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFV 339 (417)
T ss_pred CCCCEEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEE
Confidence 1111111112334444432211 136899999888887775421 11122222 256666665
Q ss_pred ceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
.... -...|+.+|+.+..+..+.
T Consensus 340 ~~~~-----------~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 340 HREG-----------GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred EccC-----------CceEEEEEeCCCCCeEEcc
Confidence 4321 1246999999887665554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=10 Score=41.74 Aligned_cols=146 Identities=10% Similarity=0.087 Sum_probs=75.3
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+|++|+.+++...+.. .+.. .......-++ +|++.....+ ..++|++|+.+....++... +.
T Consensus 228 ~~l~~~dl~~g~~~~l~~--~~g~-~~~~~~SpDG~~l~~~~s~~g-------~~~Iy~~d~~~g~~~~lt~~-----~~ 292 (433)
T PRK04922 228 SAIYVQDLATGQRELVAS--FRGI-NGAPSFSPDGRRLALTLSRDG-------NPEIYVMDLGSRQLTRLTNH-----FG 292 (433)
T ss_pred cEEEEEECCCCCEEEecc--CCCC-ccCceECCCCCEEEEEEeCCC-------CceEEEEECCCCCeEECccC-----CC
Confidence 569999999888777654 2211 1111122234 4554432211 24799999998877666543 11
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCe-EEEe
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR-ALLF 312 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~-iyif 312 (647)
.-...+....+..|++.....+ ...+|.++..+..++++...+ ......+.. +++ |++.
T Consensus 293 ~~~~~~~spDG~~l~f~sd~~g--------------~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 293 IDTEPTWAPDGKSIYFTSDRGG--------------RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMV 353 (433)
T ss_pred CccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEE
Confidence 1111111111333443322211 136899999888887775422 111122222 444 4443
Q ss_pred cceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
.+... -..|+++|+.+.....+.
T Consensus 354 ~~~~~------------~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 354 HGSGG------------QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred ECCCC------------ceeEEEEECCCCCeEECC
Confidence 33111 136999999888777554
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=92.53 E-value=5.4 Score=42.01 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=83.7
Q ss_pred CEEEEEeCCcCCCCCcccccc-CcEEEEECCCC-----cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeee
Q 006384 135 NYLYIFGGEFTSPNQERFHHY-KDFWMLDLKTN-----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYY 208 (647)
Q Consensus 135 ~~iyv~GG~~~~~~~~~~~~~-~dv~~yD~~t~-----~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~ 208 (647)
..++++|........ .... ..++.|++... ++..+... +..-.-++++.++++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~--~~~~~Gri~v~~i~~~~~~~~~l~~i~~~--~~~g~V~ai~~~~~~lv~~~g----------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGED--PEPSSGRILVFEISESPENNFKLKLIHST--EVKGPVTAICSFNGRLVVAVG----------- 106 (321)
T ss_dssp SEEEEEEEEE--TTS--SS-S-EEEEEEEECSS-----EEEEEEEE--EESS-EEEEEEETTEEEEEET-----------
T ss_pred cCEEEEEeccccccc--ccccCcEEEEEEEEcccccceEEEEEEEE--eecCcceEhhhhCCEEEEeec-----------
Confidence 466677754332221 0112 56888988884 56655442 223335567778999777655
Q ss_pred CcEEEEEcCCCc-eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 209 NDLYVFDLDQFK-WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 209 ~dv~~yD~~t~~-W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
+.+++|++.... +...... ..+-...++.++++.|+| |-.... -.++.|+....+-..+
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~-----~~~~~i~sl~~~~~~I~v-gD~~~s--------------v~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFY-----DSPFYITSLSVFKNYILV-GDAMKS--------------VSLLRYDEENNKLILV 166 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE------BSSSEEEEEEETTEEEE-EESSSS--------------EEEEEEETTTE-EEEE
T ss_pred CEEEEEEccCcccchhhhee-----cceEEEEEEeccccEEEE-EEcccC--------------EEEEEEEccCCEEEEE
Confidence 467888888777 8887776 334466666777886654 433222 1356778767777777
Q ss_pred ecCCCCCCCceeeEEEEE-CCeEEEecc
Q 006384 288 KKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (647)
Q Consensus 288 ~~~g~~P~~R~~~s~~~~-~~~iyifGG 314 (647)
... +.++...++.++ ++. .++++
T Consensus 167 a~d---~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 167 ARD---YQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp EEE---SS-BEEEEEEEE-SSS-EEEEE
T ss_pred Eec---CCCccEEEEEEecCCc-EEEEE
Confidence 664 557777777777 665 44444
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=19 Score=39.74 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=76.0
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+|++|+.+++-..+.. .+.. .......-++ +|++.....+ ...+|++|+.+....++... +.
T Consensus 223 ~~i~i~dl~~G~~~~l~~--~~~~-~~~~~~SPDG~~La~~~~~~g-------~~~I~~~d~~tg~~~~lt~~-----~~ 287 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS--FPRH-NGAPAFSPDGSKLAFALSKTG-------SLNLYVMDLASGQIRQVTDG-----RS 287 (429)
T ss_pred cEEEEEECCCCCeEEccC--CCCC-cCCeEECCCCCEEEEEEcCCC-------CcEEEEEECCCCCEEEccCC-----CC
Confidence 468999998887666654 1211 1111112244 4555433211 23599999999888777543 11
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecc
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG 314 (647)
......... ++..++|...... ...+|.+++.+..-.++...+ .........-+++.++|.+
T Consensus 288 ~~~~~~wSP-DG~~I~f~s~~~g-------------~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 288 NNTEPTWFP-DSQNLAYTSDQAG-------------RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred CcCceEECC-CCCEEEEEeCCCC-------------CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEE
Confidence 111111111 4443333322111 136899998877666664321 1111111122455555543
Q ss_pred eeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
... -...|+++|+.++.+..+..
T Consensus 350 ~~~-----------g~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 350 SNG-----------GQQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred ccC-----------CCceEEEEECCCCCeEEeCC
Confidence 321 02469999999988876653
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=92.13 E-value=13 Score=36.46 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=52.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCcc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~ 151 (647)
++...| ++.++++|+. -+.+..|+..+..-....... . ..-..+... ++..+++++..
T Consensus 14 ~~~~~~--~~~~l~~~~~---------~g~i~i~~~~~~~~~~~~~~~--~-~~i~~~~~~~~~~~l~~~~~~------- 72 (289)
T cd00200 14 CVAFSP--DGKLLATGSG---------DGTIKVWDLETGELLRTLKGH--T-GPVRDVAASADGTYLASGSSD------- 72 (289)
T ss_pred EEEEcC--CCCEEEEeec---------CcEEEEEEeeCCCcEEEEecC--C-cceeEEEECCCCCEEEEEcCC-------
Confidence 344444 4567777762 236777777765422111110 1 111122222 34466666642
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
..+.+||+.+......-. .....-.++... ++.+++.|+. ...+.+||+.+.+
T Consensus 73 ----~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~ 126 (289)
T cd00200 73 ----KTIRLWDLETGECVRTLT---GHTSYVSSVAFSPDGRILSSSSR---------DKTIKVWDVETGK 126 (289)
T ss_pred ----CeEEEEEcCcccceEEEe---ccCCcEEEEEEcCCCCEEEEecC---------CCeEEEEECCCcE
Confidence 468888887653221111 111112222333 3356666552 2468888887544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=91.93 E-value=13 Score=36.30 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=34.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCcc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~ 151 (647)
.+...+ ++..+++|+. -+.+++|++.+......-.. ....-.++... ++.+++.|+..
T Consensus 56 ~~~~~~--~~~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~------- 114 (289)
T cd00200 56 DVAASA--DGTYLASGSS---------DKTIRLWDLETGECVRTLTG---HTSYVSSVAFSPDGRILSSSSRD------- 114 (289)
T ss_pred EEEECC--CCCEEEEEcC---------CCeEEEEEcCcccceEEEec---cCCcEEEEEEcCCCCEEEEecCC-------
Confidence 344444 4556666662 24678888876432211111 11112222333 34566666521
Q ss_pred ccccCcEEEEECCCCc
Q 006384 152 FHHYKDFWMLDLKTNQ 167 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~ 167 (647)
..+.+||+.+..
T Consensus 115 ----~~i~~~~~~~~~ 126 (289)
T cd00200 115 ----KTIKVWDVETGK 126 (289)
T ss_pred ----CeEEEEECCCcE
Confidence 468889987544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=19 Score=39.60 Aligned_cols=147 Identities=11% Similarity=0.055 Sum_probs=72.9
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+|++|+.++.=..+.. .+. ...+....-++ +|++.....+ ..++|.+|+.+....++... ..
T Consensus 220 ~~I~~~dl~~g~~~~l~~--~~g-~~~~~~~SPDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~lt~~-----~~ 284 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN--FKG-SNSAPAWSPDGRTLAVALSRDG-------NSQIYTVNADGSGLRRLTQS-----SG 284 (427)
T ss_pred cEEEEEECCCCCEEEeec--CCC-CccceEECCCCCEEEEEEccCC-------CceEEEEECCCCCcEECCCC-----CC
Confidence 469999998887555543 121 11111112244 5554333221 35799999988776666443 11
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEec
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFG 313 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyifG 313 (647)
.....+...-+..|++.....+ ...+|.++..+...+++...+ ......++ -+++.+++.
T Consensus 285 ~~~~~~wSpDG~~l~f~s~~~g--------------~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 285 IDTEPFFSPDGRSIYFTSDRGG--------------APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCcCeEEcCCCCEEEEEecCCC--------------CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEE
Confidence 1111111111334444322111 135889998877777765321 11112222 245444443
Q ss_pred ceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
.... . ...|+++|+.+.....+.
T Consensus 346 s~~~---------g--~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 346 SRVG---------G--AFKLYVQDLATGQVTALT 368 (427)
T ss_pred EccC---------C--cEEEEEEECCCCCeEEcc
Confidence 3221 0 136999999887766554
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=21 Score=37.48 Aligned_cols=113 Identities=11% Similarity=0.055 Sum_probs=52.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECC-CCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~-~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~ 148 (647)
+.+++.|. +..||+.+.. .+.+..|++. +.++..+.... .+-..+.++.. +..||+..- .
T Consensus 38 ~~l~~spd-~~~lyv~~~~---------~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~-~---- 100 (330)
T PRK11028 38 QPMVISPD-KRHLYVGVRP---------EFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASY-N---- 100 (330)
T ss_pred ccEEECCC-CCEEEEEECC---------CCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEc-C----
Confidence 34555552 3556664431 1456667765 45665444221 11111223333 345666542 1
Q ss_pred CccccccCcEEEEECCCC-c-EEEcccCCCCCCcceeEEEEE-C-CEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 149 QERFHHYKDFWMLDLKTN-Q-WEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~-~-W~~~~~~~~P~~R~~h~~~~~-~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
-+.+.+|++.++ . ...+.. .+.....|.+++. + +.+|+..- ..+.|.+||+.+
T Consensus 101 ------~~~v~v~~~~~~g~~~~~~~~--~~~~~~~~~~~~~p~g~~l~v~~~---------~~~~v~v~d~~~ 157 (330)
T PRK11028 101 ------ANCVSVSPLDKDGIPVAPIQI--IEGLEGCHSANIDPDNRTLWVPCL---------KEDRIRLFTLSD 157 (330)
T ss_pred ------CCeEEEEEECCCCCCCCceee--ccCCCcccEeEeCCCCCEEEEeeC---------CCCEEEEEEECC
Confidence 145667776532 1 111211 1222233555444 3 35665432 136789999876
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=91.28 E-value=9.6 Score=40.11 Aligned_cols=141 Identities=18% Similarity=0.282 Sum_probs=84.1
Q ss_pred CEEEEEcCeecCCCcceee-CcEEEEECCCC-----eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCcccccc
Q 006384 82 TELILYGGEFYNGNKTYVY-GDLYRYDVEKQ-----EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHY 155 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~-ndl~~yd~~~~-----~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~ 155 (647)
..++++|-.+..+...... ..++.|++... +++.+..... +-.-++++.++++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V~ai~~~~~~lv~~~g------------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV--KGPVTAICSFNGRLVVAVG------------- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE--SS-EEEEEEETTEEEEEET-------------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee--cCcceEhhhhCCEEEEeec-------------
Confidence 5777778765444333233 78999999885 6666654332 2335677778999777666
Q ss_pred CcEEEEECCCCc-EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~-W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
+.+.+|++.... +..... ...+-....+.+++++|++ |-... .-.++.|+....+-..+... +.
T Consensus 107 ~~l~v~~l~~~~~l~~~~~--~~~~~~i~sl~~~~~~I~v-gD~~~-------sv~~~~~~~~~~~l~~va~d-----~~ 171 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAF--YDSPFYITSLSVFKNYILV-GDAMK-------SVSLLRYDEENNKLILVARD-----YQ 171 (321)
T ss_dssp TEEEEEEEETTSSEEEEEE--E-BSSSEEEEEEETTEEEE-EESSS-------SEEEEEEETTTE-EEEEEEE-----SS
T ss_pred CEEEEEEccCcccchhhhe--ecceEEEEEEeccccEEEE-EEccc-------CEEEEEEEccCCEEEEEEec-----CC
Confidence 467788877777 877776 3333455566777886664 43211 11244567766667777665 56
Q ss_pred CceeeeEEEe-CCEEEEEe
Q 006384 235 PRSGFQFFVY-QDEVFLYG 252 (647)
Q Consensus 235 ~R~~~s~~~~-~~~Iyv~G 252 (647)
++...++..+ ++..++.+
T Consensus 172 ~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 172 PRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp -BEEEEEEEE-SSSEEEEE
T ss_pred CccEEEEEEecCCcEEEEE
Confidence 7776677666 54444444
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=90.83 E-value=4.5 Score=41.26 Aligned_cols=107 Identities=21% Similarity=0.300 Sum_probs=74.8
Q ss_pred ECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEE
Q 006384 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 133 ~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
.++.||.--|..+. +.+.+||+.+++-..... +|..-++-+++.++++||..-=. .+..+
T Consensus 54 ~~g~LyESTG~yG~---------S~l~~~d~~tg~~~~~~~--l~~~~FgEGit~~~d~l~qLTWk---------~~~~f 113 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ---------SSLRKVDLETGKVLQSVP--LPPRYFGEGITILGDKLYQLTWK---------EGTGF 113 (264)
T ss_dssp ETTEEEEEECSTTE---------EEEEEEETTTSSEEEEEE---TTT--EEEEEEETTEEEEEESS---------SSEEE
T ss_pred CCCEEEEeCCCCCc---------EEEEEEECCCCcEEEEEE--CCccccceeEEEECCEEEEEEec---------CCeEE
Confidence 47899998887543 678899999998665544 57777888999999999998653 35789
Q ss_pred EEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe
Q 006384 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
+||+.+. ..+... +.+..|-+++..+..||+--|.+ .++.+||.+.+
T Consensus 114 ~yd~~tl--~~~~~~-----~y~~EGWGLt~dg~~Li~SDGS~-----------------~L~~~dP~~f~ 160 (264)
T PF05096_consen 114 VYDPNTL--KKIGTF-----PYPGEGWGLTSDGKRLIMSDGSS-----------------RLYFLDPETFK 160 (264)
T ss_dssp EEETTTT--EEEEEE-----E-SSS--EEEECSSCEEEE-SSS-----------------EEEEE-TTT-S
T ss_pred EEccccc--eEEEEE-----ecCCcceEEEcCCCEEEEECCcc-----------------ceEEECCcccc
Confidence 9999864 455444 45568888998888999888843 38899998754
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.80 E-value=27 Score=38.00 Aligned_cols=147 Identities=16% Similarity=0.137 Sum_probs=84.9
Q ss_pred CcEEEEECCCC-----cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc---eEE-ecc
Q 006384 156 KDFWMLDLKTN-----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQE-IKP 226 (647)
Q Consensus 156 ~dv~~yD~~t~-----~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~---W~~-v~~ 226 (647)
+.+|.+++... .|..+.. +..-..+.+...++.+|+...... ....|..+++.... |.. +.+
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~---~~~~~~~~v~~~~~~~yi~Tn~~a------~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSP---REDGVEYYVDHHGDRLYILTNDDA------PNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEE---SSSS-EEEEEEETTEEEEEE-TT-------TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred CeEEEEeccccCCCcCCcEEEeC---CCCceEEEEEccCCEEEEeeCCCC------CCcEEEEecccccccccceeEEcC
Confidence 78999999875 7888765 223333344556899999876322 23567888887665 664 333
Q ss_pred CCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCC-CCeEEEeecCCCCCCCceeeEEEEE
Q 006384 227 RFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
. .....--.+.+.++.|++.-=.+ ....|.+|++. +..-..+.. |. .+....+.
T Consensus 323 ~-----~~~~~l~~~~~~~~~Lvl~~~~~--------------~~~~l~v~~~~~~~~~~~~~~----p~--~g~v~~~~ 377 (414)
T PF02897_consen 323 E-----DEDVSLEDVSLFKDYLVLSYREN--------------GSSRLRVYDLDDGKESREIPL----PE--AGSVSGVS 377 (414)
T ss_dssp ------SSSEEEEEEEEETTEEEEEEEET--------------TEEEEEEEETT-TEEEEEEES----SS--SSEEEEEE
T ss_pred C-----CCceeEEEEEEECCEEEEEEEEC--------------CccEEEEEECCCCcEEeeecC----Cc--ceEEeccC
Confidence 2 22234455566688888875432 24568899998 433333322 22 22212222
Q ss_pred ----CCe-EEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 306 ----KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 306 ----~~~-iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.+. .|.+.+... -..+|.||+.+++.+.+..
T Consensus 378 ~~~~~~~~~~~~ss~~~------------P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 378 GDFDSDELRFSYSSFTT------------PPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp S-TT-SEEEEEEEETTE------------EEEEEEEETTTTCEEEEEE
T ss_pred CCCCCCEEEEEEeCCCC------------CCEEEEEECCCCCEEEEEe
Confidence 233 334444432 3579999999998877653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=26 Score=37.30 Aligned_cols=187 Identities=12% Similarity=0.118 Sum_probs=91.2
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcc-eeEEEEECCEEEEEeCCc
Q 006384 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSWKNYLYIFGGEF 144 (647)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~-~ha~v~~~~~iyv~GG~~ 144 (647)
|....-..+++.. .++.|++|-. ..+++=.=.-.+|+.+.... |.... ..++...++..|+.|..
T Consensus 43 ~~~~~l~~v~F~d--~~~g~avG~~----------G~il~T~DgG~tW~~~~~~~-~~~~~~l~~v~~~~~~~~~~G~~- 108 (334)
T PRK13684 43 PTEANLLDIAFTD--PNHGWLVGSN----------RTLLETNDGGETWEERSLDL-PEENFRLISISFKGDEGWIVGQP- 108 (334)
T ss_pred CCCCceEEEEEeC--CCcEEEEECC----------CEEEEEcCCCCCceECccCC-cccccceeeeEEcCCcEEEeCCC-
Confidence 3333444455553 4667777741 13333222345899875432 22222 22333335556666521
Q ss_pred CCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEE
Q 006384 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (647)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (647)
.-+++=.=.-.+|+.+... ...+........+ .+.+|+.|.. ..+++=+-.-.+|+.
T Consensus 109 -----------g~i~~S~DgG~tW~~~~~~-~~~~~~~~~i~~~~~~~~~~~g~~----------G~i~~S~DgG~tW~~ 166 (334)
T PRK13684 109 -----------SLLLHTTDGGKNWTRIPLS-EKLPGSPYLITALGPGTAEMATNV----------GAIYRTTDGGKNWEA 166 (334)
T ss_pred -----------ceEEEECCCCCCCeEccCC-cCCCCCceEEEEECCCcceeeecc----------ceEEEECCCCCCcee
Confidence 1233322223489988642 1112222223333 3456665542 234444334578998
Q ss_pred eccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEE-eCCCCeEEEeecCCCCCCCceeeEE
Q 006384 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL-DPRTWEWSKVKKIGMPPGPRAGFSM 302 (647)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y-d~~t~~W~~v~~~g~~P~~R~~~s~ 302 (647)
+... ..-..+.+....+..|+..|..+. ++.. +....+|+.+.. +..+.-+++
T Consensus 167 ~~~~------~~g~~~~i~~~~~g~~v~~g~~G~----------------i~~s~~~gg~tW~~~~~----~~~~~l~~i 220 (334)
T PRK13684 167 LVED------AAGVVRNLRRSPDGKYVAVSSRGN----------------FYSTWEPGQTAWTPHQR----NSSRRLQSM 220 (334)
T ss_pred CcCC------CcceEEEEEECCCCeEEEEeCCce----------------EEEEcCCCCCeEEEeeC----CCcccceee
Confidence 8654 222444555554555555444333 3332 445568998854 344455555
Q ss_pred EEE-CCeEEEecc
Q 006384 303 CVH-KKRALLFGG 314 (647)
Q Consensus 303 ~~~-~~~iyifGG 314 (647)
++. ++.++++|.
T Consensus 221 ~~~~~g~~~~vg~ 233 (334)
T PRK13684 221 GFQPDGNLWMLAR 233 (334)
T ss_pred eEcCCCCEEEEec
Confidence 554 677888874
|
|
| >PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.063 Score=57.34 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=5.8
Q ss_pred Eeecceec
Q 006384 480 ITLDDLYS 487 (647)
Q Consensus 480 ~tl~D~~~ 487 (647)
+|++|+-.
T Consensus 26 lTi~Dtlk 33 (458)
T PF10446_consen 26 LTINDTLK 33 (458)
T ss_pred ccHHHHHH
Confidence 78888744
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=90.26 E-value=22 Score=35.87 Aligned_cols=113 Identities=14% Similarity=0.030 Sum_probs=52.4
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
.+++.|. ++.+|+.++. .+.++.||+.+.+-. .+... ...++++.. ++.+++++....
T Consensus 77 ~~~~~~~-g~~l~~~~~~---------~~~l~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~----- 136 (300)
T TIGR03866 77 LFALHPN-GKILYIANED---------DNLVTVIDIETRKVLAEIPVG-----VEPEGMAVSPDGKIVVNTSETT----- 136 (300)
T ss_pred EEEECCC-CCEEEEEcCC---------CCeEEEEECCCCeEEeEeeCC-----CCcceEEECCCCCEEEEEecCC-----
Confidence 3445542 3456665541 136888998875422 22211 111223332 466666654321
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
+.+..||..+..-..... ...+..+.....+++.+++++.. -..+.+||+.+.+.
T Consensus 137 -----~~~~~~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~--------~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 137 -----NMAHFIDTKTYEIVDNVL---VDQRPRFAEFTADGKELWVSSEI--------GGTVSVIDVATRKV 191 (300)
T ss_pred -----CeEEEEeCCCCeEEEEEE---cCCCccEEEECCCCCEEEEEcCC--------CCEEEEEEcCccee
Confidence 235567877654322111 11111222222345444444421 24588899887654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=89.31 E-value=38 Score=37.25 Aligned_cols=193 Identities=13% Similarity=0.153 Sum_probs=103.9
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
++|++|+.+.+=+.+.... . ........- +.+|++.-.... ..++|.+|+.+..++++... +.
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~--g-~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~dl~~g~~~~LT~~--~~-- 277 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQ--G-MLVVSDVSKDGSKLLLTMAPKG---------QPDIYLYDTNTKTLTQITNY--PG-- 277 (419)
T ss_pred EEEEEECCCCcEEEEecCC--C-cEEeeEECCCCCEEEEEEccCC---------CcEEEEEECCCCcEEEcccC--CC--
Confidence 7999999988777776421 1 111111222 345555433211 25899999999999988652 21
Q ss_pred ceeEEEE-E-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCC
Q 006384 181 SGHRMVL-Y-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEV 258 (647)
Q Consensus 181 ~~h~~~~-~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~ 258 (647)
....... - +.+||+.-...+ ...||++|+.+...+++.... .........+..|.+.......
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g-------~~~Iy~~dl~~g~~~rlt~~g-------~~~~~~SPDG~~Ia~~~~~~~~- 342 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG-------YPNIFMKKLNSGSVEQVVFHG-------KNNSSVSTYKNYIVYSSRETNN- 342 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC-------CceEEEEECCCCCeEeCccCC-------CcCceECCCCCEEEEEEcCCCc-
Confidence 1111122 1 446766544321 358999999999888776531 1122222224444444322111
Q ss_pred CCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEEC
Q 006384 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (647)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~ 338 (647)
.......+++++|+.+..++.+...+ ....-...-+++.++|-.... ....|+.+++
T Consensus 343 -------~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~-----------~~~~L~~~~l 399 (419)
T PRK04043 343 -------EFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYLG-----------NQSALGIIRL 399 (419)
T ss_pred -------ccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEccC-----------CcEEEEEEec
Confidence 00112357999999999888886531 111111122555555543221 1346999999
Q ss_pred CCCcEEEeEe
Q 006384 339 DNHRWYPLEL 348 (647)
Q Consensus 339 ~t~~W~~l~~ 348 (647)
..+.=..++.
T Consensus 400 ~g~~~~~l~~ 409 (419)
T PRK04043 400 NYNKSFLFPL 409 (419)
T ss_pred CCCeeEEeec
Confidence 8766555554
|
|
| >PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes | Back alignment and domain information |
|---|
Probab=89.06 E-value=28 Score=35.27 Aligned_cols=229 Identities=12% Similarity=0.123 Sum_probs=94.6
Q ss_pred cceEEEEeccCCCEEEEEcCe-ecCCCcceeeCcEEE-EECCCCeEEEecCCCCCC-------CcceeEEEEECCEEEEE
Q 006384 70 SNCSLNINPLKETELILYGGE-FYNGNKTYVYGDLYR-YDVEKQEWKVISSPNSPP-------PRSAHQAVSWKNYLYIF 140 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~-~~~g~~~~~~ndl~~-yd~~~~~W~~l~s~~~P~-------~R~~ha~v~~~~~iyv~ 140 (647)
.++++-++ +|+||.+=-. +..+.+ .....+|. --...+.|+...-+..|. .-.-|+.+.+++.-|.+
T Consensus 76 HCmSMGv~---~NRLfa~iEtR~~a~~k-m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~ 151 (367)
T PF12217_consen 76 HCMSMGVV---GNRLFAVIETRTVASNK-MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAV 151 (367)
T ss_dssp E-B-EEEE---TTEEEEEEEEEETTT---EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEE
T ss_pred eeeeeeee---cceeeEEEeehhhhhhh-hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeE
Confidence 45667777 8999866543 222221 11112221 114677898544332333 45578899998888888
Q ss_pred eCCcCCCCCccccccCcE--EEEECC----CC-cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEE
Q 006384 141 GGEFTSPNQERFHHYKDF--WMLDLK----TN-QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv--~~yD~~----t~-~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
|=.++.... +.+ ..|... .. .=+.++.. .-..-+-.+.-.+++.||+.---... ...-+.+.+
T Consensus 152 GyHnGD~sP------Re~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyY~g~LyLtTRgt~~---~~~GS~L~r 221 (367)
T PF12217_consen 152 GYHNGDVSP------RELGFLYFSDAFASPGVFVRRIIPSE-YERNASEPCVKYYDGVLYLTTRGTLP---TNPGSSLHR 221 (367)
T ss_dssp EEEE-SSSS-------EEEEEEETTTTT-TT--EEEE--GG-G-TTEEEEEEEEETTEEEEEEEES-T---TS---EEEE
T ss_pred EeccCCCCc------ceeeEEEecccccCCcceeeeechhh-hccccccchhhhhCCEEEEEEcCcCC---CCCcceeee
Confidence 844333222 222 222111 11 11222221 11222334555679999997532211 123456777
Q ss_pred EEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCC---CcccCCCCCceeeeEEEE-------eCCCCe
Q 006384 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS---TDKNQSEKGIIHSDLWSL-------DPRTWE 283 (647)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~---~~~~~~~~~~~~~dv~~y-------d~~t~~ 283 (647)
-+.....|..+.... .......-++..++.||+||--....- ....++-.+.+ .-++.. .+..-.
T Consensus 222 s~d~G~~w~slrfp~----nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~y-PRtF~~k~nv~~W~~d~~e 296 (367)
T PF12217_consen 222 SDDNGQNWSSLRFPN----NVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANY-PRTFMLKVNVSDWSLDDVE 296 (367)
T ss_dssp ESSTTSS-EEEE-TT-------SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B---EEEEEEEETTT---TT--
T ss_pred ecccCCchhhccccc----cccccCCCceeeCCEEEEEeccccccccccCCCcccccccC-CceEEEEeecccCCccceE
Confidence 777778899886541 122233345666999999995322100 00011111111 112222 355567
Q ss_pred EEEeecC---CCCCCCceeeEEEEE-CCeE-EEecceec
Q 006384 284 WSKVKKI---GMPPGPRAGFSMCVH-KKRA-LLFGGVVD 317 (647)
Q Consensus 284 W~~v~~~---g~~P~~R~~~s~~~~-~~~i-yifGG~~~ 317 (647)
|..+... |..-..-.|.+.+++ ++.| |||||..-
T Consensus 297 w~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED~ 335 (367)
T PF12217_consen 297 WVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDF 335 (367)
T ss_dssp -EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-S
T ss_pred EEEeecceeccccccccccceeEEEECCEEEEEecCccc
Confidence 7776542 333344455555555 6766 47888643
|
This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=88.90 E-value=41 Score=37.06 Aligned_cols=168 Identities=10% Similarity=-0.010 Sum_probs=84.9
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
..+|++++.+.+-+.+.... ..-.......-+..|++...... ..++|++|+.+....++... +
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~--~~~~~~~~SPDG~~La~~~~~~g---------~~~I~~~d~~tg~~~~lt~~--~--- 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP--RHNGAPAFSPDGSKLAFALSKTG---------SLNLYVMDLASGQIRQVTDG--R--- 286 (429)
T ss_pred cEEEEEECCCCCeEEccCCC--CCcCCeEECCCCCEEEEEEcCCC---------CcEEEEEECCCCCEEEccCC--C---
Confidence 46889999888777665421 11111111111345555432211 24699999999888777542 1
Q ss_pred ceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 181 SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 181 ~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
.......+ +++.++|..... + ...+|.+|+.+..-.++... ..... ..... ++..+++.+....
T Consensus 287 ~~~~~~~wSPDG~~I~f~s~~~-g-----~~~Iy~~d~~~g~~~~lt~~-----~~~~~--~~~~SpDG~~Ia~~~~~~g 353 (429)
T PRK03629 287 SNNTEPTWFPDSQNLAYTSDQA-G-----RPQVYKVNINGGAPQRITWE-----GSQNQ--DADVSSDGKFMVMVSSNGG 353 (429)
T ss_pred CCcCceEECCCCCEEEEEeCCC-C-----CceEEEEECCCCCeEEeecC-----CCCcc--CEEECCCCCEEEEEEccCC
Confidence 11222333 444444433211 1 24789999988777766433 11111 12222 3444444332211
Q ss_pred CCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecce
Q 006384 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (647)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~ 315 (647)
...++++|+.+..+..+.... ........-+++.++|.+.
T Consensus 354 -------------~~~I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 354 -------------QQHIAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred -------------CceEEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEc
Confidence 135889999988888775321 0111112236777777664
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=88.10 E-value=41 Score=38.24 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=64.5
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC--cEEEcccCCC---C---CCcceeEEEEECCEEEEEecccCC
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC---P---SPRSGHRMVLYKHKIIVFGGFYDT 201 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~~~---P---~~R~~h~~~~~~~~lyv~GG~~~~ 201 (647)
-++.++.||+... ...|+.+|..+. .|+.-..... + ........++.+++||+...
T Consensus 65 Pvv~~g~vyv~s~------------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---- 128 (527)
T TIGR03075 65 PLVVDGVMYVTTS------------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---- 128 (527)
T ss_pred CEEECCEEEEECC------------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC----
Confidence 3566899998653 145889998876 4775432110 1 00112234566788886322
Q ss_pred CCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeC
Q 006384 202 LREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (647)
Q Consensus 202 ~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (647)
-..|+.+|..+.+ |+.-..... .......+.++.++.||+-...... .....++.||+
T Consensus 129 ------dg~l~ALDa~TGk~~W~~~~~~~~---~~~~~tssP~v~~g~Vivg~~~~~~-----------~~~G~v~AlD~ 188 (527)
T TIGR03075 129 ------DARLVALDAKTGKVVWSKKNGDYK---AGYTITAAPLVVKGKVITGISGGEF-----------GVRGYVTAYDA 188 (527)
T ss_pred ------CCEEEEEECCCCCEEeeccccccc---ccccccCCcEEECCEEEEeeccccc-----------CCCcEEEEEEC
Confidence 2468999998765 765322100 0111222345567777664321110 12235778887
Q ss_pred CCC--eEEEe
Q 006384 280 RTW--EWSKV 287 (647)
Q Consensus 280 ~t~--~W~~v 287 (647)
.+. .|+.-
T Consensus 189 ~TG~~lW~~~ 198 (527)
T TIGR03075 189 KTGKLVWRRY 198 (527)
T ss_pred CCCceeEecc
Confidence 654 56643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=88.08 E-value=46 Score=39.84 Aligned_cols=91 Identities=10% Similarity=0.016 Sum_probs=45.8
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceE-EeccCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRFGSMW 232 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~~~~~ 232 (647)
..+.+||+.++.....-. ... ..-.+++.. ++.+++.||.+ ..+.+||+.+..-. .+..
T Consensus 555 g~v~lWd~~~~~~~~~~~--~H~-~~V~~l~~~p~~~~~L~Sgs~D---------g~v~iWd~~~~~~~~~~~~------ 616 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMK--EHE-KRVWSIDYSSADPTLLASGSDD---------GSVKLWSINQGVSIGTIKT------ 616 (793)
T ss_pred CeEEEEECCCCeEEEEec--CCC-CCEEEEEEcCCCCCEEEEEcCC---------CEEEEEECCCCcEEEEEec------
Confidence 357788887664322111 111 112223332 45677777753 35778887654321 2211
Q ss_pred CCCceeeeEEE--eCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC
Q 006384 233 PSPRSGFQFFV--YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (647)
Q Consensus 233 P~~R~~~s~~~--~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (647)
... ..++.. .++.+++.|+.++. +.+||+.+.
T Consensus 617 ~~~--v~~v~~~~~~g~~latgs~dg~----------------I~iwD~~~~ 650 (793)
T PLN00181 617 KAN--ICCVQFPSESGRSLAFGSADHK----------------VYYYDLRNP 650 (793)
T ss_pred CCC--eEEEEEeCCCCCEEEEEeCCCe----------------EEEEECCCC
Confidence 111 111221 25677888876654 788887653
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.59 E-value=48 Score=36.31 Aligned_cols=174 Identities=16% Similarity=0.223 Sum_probs=87.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEec-CCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~-s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
++.++++|+- .. -+-.+|..+..- ++. +...-.-|++ ++...++.|++.||++. .|-
T Consensus 122 d~t~l~s~sD---d~------v~k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg-----------~vr 179 (487)
T KOG0310|consen 122 DNTMLVSGSD---DK------VVKYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDG-----------KVR 179 (487)
T ss_pred CCeEEEecCC---Cc------eEEEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCc-----------eEE
Confidence 7899999983 21 122234444332 211 1111122322 22334678999999865 366
Q ss_pred EEECCCC-cEEEcccCCCCCCcceeEEEEE-C-CEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCc
Q 006384 160 MLDLKTN-QWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (647)
Q Consensus 160 ~yD~~t~-~W~~~~~~~~P~~R~~h~~~~~-~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R 236 (647)
.||+.+. .|..--..+.|..+ ++.+ + ..|...|| |.+-++|+.++. +.+..+. ....
T Consensus 180 l~DtR~~~~~v~elnhg~pVe~----vl~lpsgs~iasAgG-----------n~vkVWDl~~G~-qll~~~~----~H~K 239 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELNHGCPVES----VLALPSGSLIASAGG-----------NSVKVWDLTTGG-QLLTSMF----NHNK 239 (487)
T ss_pred EEEeccCCceeEEecCCCceee----EEEcCCCCEEEEcCC-----------CeEEEEEecCCc-eehhhhh----cccc
Confidence 7888777 55443333334332 2333 3 34555566 467777776432 1111110 0111
Q ss_pred eeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEecc
Q 006384 237 SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGG 314 (647)
Q Consensus 237 ~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyifGG 314 (647)
.--++... ++.-++-||.+.. +-+||. ..|..+..+.. |.|-. ++++ .++..+++|+
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~----------------VKVfd~--t~~Kvv~s~~~-~~pvL--siavs~dd~t~viGm 298 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRH----------------VKVFDT--TNYKVVHSWKY-PGPVL--SIAVSPDDQTVVIGM 298 (487)
T ss_pred eEEEEEeecCCceEeecccccc----------------eEEEEc--cceEEEEeeec-cccee--eEEecCCCceEEEec
Confidence 11122222 5577778888776 678883 34666655422 33332 3333 2778888888
Q ss_pred eec
Q 006384 315 VVD 317 (647)
Q Consensus 315 ~~~ 317 (647)
.++
T Consensus 299 snG 301 (487)
T KOG0310|consen 299 SNG 301 (487)
T ss_pred ccc
Confidence 654
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=86.97 E-value=46 Score=35.42 Aligned_cols=195 Identities=15% Similarity=0.108 Sum_probs=92.0
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCCCccccccCcEEE--EECCCCcEEEcccCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWM--LDLKTNQWEQLNLKGC 176 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~~~~~~~~~dv~~--yD~~t~~W~~~~~~~~ 176 (647)
.++.||..+.++..+.... .-...+..++ ++.||+....... ...|.. ++..+.+.+.+.. .
T Consensus 16 ~~~~~d~~~g~l~~~~~~~---~~~~Ps~l~~~~~~~~LY~~~e~~~~--------~g~v~~~~i~~~~g~L~~~~~--~ 82 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVA---EGENPSWLAVSPDGRRLYVVNEGSGD--------SGGVSSYRIDPDTGTLTLLNS--V 82 (345)
T ss_dssp EEEEEETTTTEEEEEEEEE---ESSSECCEEE-TTSSEEEEEETTSST--------TTEEEEEEEETTTTEEEEEEE--E
T ss_pred EEEEEcCCCCCceEeeeec---CCCCCceEEEEeCCCEEEEEEccccC--------CCCEEEEEECCCcceeEEeee--e
Confidence 4556677899998665311 1111122222 5789988654311 134444 4555567877765 3
Q ss_pred CCCcceeEEEEE---CCEEEEEecccCCCCceeeeCcEEEEEcCCC-ceEEec-------cCCCCCCCCCceeeeEEEe-
Q 006384 177 PSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIK-------PRFGSMWPSPRSGFQFFVY- 244 (647)
Q Consensus 177 P~~R~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v~-------~~~~~~~P~~R~~~s~~~~- 244 (647)
+......+.+.+ +..||+. -+. -..+.+|++... .-.... ..+.......-.-|++...
T Consensus 83 ~~~g~~p~~i~~~~~g~~l~va-ny~--------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 83 PSGGSSPCHIAVDPDGRFLYVA-NYG--------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP 153 (345)
T ss_dssp EESSSCEEEEEECTTSSEEEEE-ETT--------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T
T ss_pred ccCCCCcEEEEEecCCCEEEEE-Ecc--------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC
Confidence 322222222333 3455553 221 245777777653 222211 0000000122233455444
Q ss_pred -CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe--EEEeecCCCCCCCceeeEEEEE--CCeEEEecceeccc
Q 006384 245 -QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDME 319 (647)
Q Consensus 245 -~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~v~~~g~~P~~R~~~s~~~~--~~~iyifGG~~~~~ 319 (647)
+..+|+..= . .+.|++|+..... .+..... ..|..-.-..+++. +..+||..-.
T Consensus 154 dg~~v~v~dl-G---------------~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~---- 212 (345)
T PF10282_consen 154 DGRFVYVPDL-G---------------ADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL---- 212 (345)
T ss_dssp TSSEEEEEET-T---------------TTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT----
T ss_pred CCCEEEEEec-C---------------CCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC----
Confidence 446776532 1 2347777776554 6553332 11222222344555 3578888643
Q ss_pred cCccccccccCCcEEEEECC--CCcEEEeEec
Q 006384 320 MKGDVIMSLFLNELYGFQLD--NHRWYPLELR 349 (647)
Q Consensus 320 ~~~~~~~~~~~ndl~~yd~~--t~~W~~l~~~ 349 (647)
.+.|.+|++. +..|+.+...
T Consensus 213 ----------s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 213 ----------SNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp ----------TTEEEEEEEETTTTEEEEEEEE
T ss_pred ----------CCcEEEEeecccCCceeEEEEe
Confidence 4667777766 6667666553
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=86.96 E-value=10 Score=38.65 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=91.9
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
.+++|++.|..... ..-+..+..| ...+.....-. +|-+-.|.+.+++++.||..-. -.+.|..
T Consensus 30 ~~~iy~~~~~~~~~----v~ey~~~~~f-~~~~~~~~~~~--Lp~~~~GtG~vVYngslYY~~~---------~s~~Ivk 93 (250)
T PF02191_consen 30 SEKIYVTSGFSGNT----VYEYRNYEDF-LRNGRSSRTYK--LPYPWQGTGHVVYNGSLYYNKY---------NSRNIVK 93 (250)
T ss_pred CCCEEEECccCCCE----EEEEcCHhHH-hhcCCCceEEE--EeceeccCCeEEECCcEEEEec---------CCceEEE
Confidence 35688887754320 1122222222 12222222222 4666777788889999987544 1578999
Q ss_pred EEcCCCceE---EeccCCCC-CCCCCcee---eeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC----
Q 006384 214 FDLDQFKWQ---EIKPRFGS-MWPSPRSG---FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW---- 282 (647)
Q Consensus 214 yD~~t~~W~---~v~~~~~~-~~P~~R~~---~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~---- 282 (647)
||+.+..-. .++..... ..|....+ .-+++-.+.|+|+-..... .+. --+-.+|+.+.
T Consensus 94 ydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~---------~g~--ivvskld~~tL~v~~ 162 (250)
T PF02191_consen 94 YDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN---------NGN--IVVSKLDPETLSVEQ 162 (250)
T ss_pred EECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC---------CCc--EEEEeeCcccCceEE
Confidence 999988765 33222110 11222222 3344557778888665443 111 22456676554
Q ss_pred eEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 283 EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 283 ~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+|..- .+. +....+.++.|.||++-..... ...=.+.||+.+++=..+..
T Consensus 163 tw~T~-----~~k-~~~~naFmvCGvLY~~~s~~~~----------~~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 163 TWNTS-----YPK-RSAGNAFMVCGVLYATDSYDTR----------DTEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred EEEec-----cCc-hhhcceeeEeeEEEEEEECCCC----------CcEEEEEEECCCCceeceee
Confidence 45431 122 2223356678999998765431 12336889998776554443
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.11 E-value=40 Score=33.89 Aligned_cols=145 Identities=21% Similarity=0.268 Sum_probs=80.0
Q ss_pred CCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEEC-CEEEEEeCC
Q 006384 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGE 143 (647)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~-~~iyv~GG~ 143 (647)
.|.|-.+ ++.+.|. .|.|++.||. .-+|+.|+.+++.+..--+ ..-+-|+++.-+ +.-++.|++
T Consensus 112 ~evPeIN-am~ldP~-enSi~~AgGD----------~~~y~~dlE~G~i~r~~rG---HtDYvH~vv~R~~~~qilsG~E 176 (325)
T KOG0649|consen 112 VEVPEIN-AMWLDPS-ENSILFAGGD----------GVIYQVDLEDGRIQREYRG---HTDYVHSVVGRNANGQILSGAE 176 (325)
T ss_pred ccCCccc-eeEeccC-CCcEEEecCC----------eEEEEEEecCCEEEEEEcC---CcceeeeeeecccCcceeecCC
Confidence 3444444 3556665 5899999983 2689999999988765433 234567766643 344566776
Q ss_pred cCCCCCccccccCcEEEEECCCCcEEEcccC-CCCC-Cc--cee--EEEEECCEEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-GCPS-PR--SGH--RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~-~~P~-~R--~~h--~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
++ .+-++|++|.+-..+-.. ..|. -| .+- .+...+..-.|.||- ..+-.|++.
T Consensus 177 DG-----------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG----------p~lslwhLr 235 (325)
T KOG0649|consen 177 DG-----------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG----------PKLSLWHLR 235 (325)
T ss_pred Cc-----------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC----------CceeEEecc
Confidence 54 366788888876554221 1111 12 222 444556666667663 234455555
Q ss_pred CCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEe
Q 006384 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (647)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~G 252 (647)
+..-+.+-+. |-..+-+...++.|++.|
T Consensus 236 sse~t~vfpi-------pa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 236 SSESTCVFPI-------PARVHLVDFVDDCVLIGG 263 (325)
T ss_pred CCCceEEEec-------ccceeEeeeecceEEEec
Confidence 5554444333 323333444455555554
|
|
| >PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues | Back alignment and domain information |
|---|
Probab=85.93 E-value=0.55 Score=46.66 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=7.2
Q ss_pred EEEEECCEEEEEecc
Q 006384 184 RMVLYKHKIIVFGGF 198 (647)
Q Consensus 184 ~~~~~~~~lyv~GG~ 198 (647)
.++-....+|-.||.
T Consensus 127 ~C~EC~R~vw~hGGr 141 (314)
T PF06524_consen 127 VCIECERGVWDHGGR 141 (314)
T ss_pred EeeeeecccccCCCe
Confidence 344444455555553
|
The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus |
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=85.55 E-value=45 Score=33.96 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=82.7
Q ss_pred CCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEE---EcccCCC----CCCcce---eEEEEECCE
Q 006384 122 PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE---QLNLKGC----PSPRSG---HRMVLYKHK 191 (647)
Q Consensus 122 P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~---~~~~~~~----P~~R~~---h~~~~~~~~ 191 (647)
|-+-.+-..+++++.||---. -.+.+.+||+.++.-. .++..+. |-...+ .-.++-.+-
T Consensus 66 p~~~~GtG~vVYngslYY~~~-----------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G 134 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY-----------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG 134 (250)
T ss_pred eceeccCCeEEECCcEEEEec-----------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC
Confidence 344455566677777776533 2478999999998654 3333111 111111 223334556
Q ss_pred EEEEecccCCCCceeeeCcEEEEEcCCC----ceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCC
Q 006384 192 IIVFGGFYDTLREVRYYNDLYVFDLDQF----KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (647)
Q Consensus 192 lyv~GG~~~~~~~~~~~~dv~~yD~~t~----~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~ 267 (647)
|+|+-....... .-.|-.+|+.+. .|..- .+.+..+.++ ++-|.||++......
T Consensus 135 LWvIYat~~~~g----~ivvskld~~tL~v~~tw~T~-------~~k~~~~naF-mvCGvLY~~~s~~~~---------- 192 (250)
T PF02191_consen 135 LWVIYATEDNNG----NIVVSKLDPETLSVEQTWNTS-------YPKRSAGNAF-MVCGVLYATDSYDTR---------- 192 (250)
T ss_pred EEEEEecCCCCC----cEEEEeeCcccCceEEEEEec-------cCchhhccee-eEeeEEEEEEECCCC----------
Confidence 777755433210 123445566554 35421 1444455444 445788888776543
Q ss_pred CceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE---CCeEEEec
Q 006384 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH---KKRALLFG 313 (647)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~---~~~iyifG 313 (647)
...-.+.||+.+++=..+.. ..+.+-..+++.-. +.+||++-
T Consensus 193 --~~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 193 --DTEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred --CcEEEEEEECCCCceeceee--eeccccCceEeeeECCCCCeEEEEE
Confidence 12336899998876554432 12333345555555 46788874
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=85.34 E-value=52 Score=34.48 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=8.0
Q ss_pred CcEEEEECCC
Q 006384 156 KDFWMLDLKT 165 (647)
Q Consensus 156 ~dv~~yD~~t 165 (647)
+.+++||+.+
T Consensus 148 ~~v~v~d~~~ 157 (330)
T PRK11028 148 DRIRLFTLSD 157 (330)
T ss_pred CEEEEEEECC
Confidence 5788999876
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=85.12 E-value=1.1e+02 Score=38.06 Aligned_cols=159 Identities=10% Similarity=0.106 Sum_probs=85.2
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCC-----------CCcceeEEEEE--CCEEEEEecccC
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-----------SPRSGHRMVLY--KHKIIVFGGFYD 200 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P-----------~~R~~h~~~~~--~~~lyv~GG~~~ 200 (647)
++.|||.... .+.|++||+.++....+...+.. ....-+.+++. ++.|||.-..
T Consensus 694 ~g~LyVad~~-----------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-- 760 (1057)
T PLN02919 694 NEKVYIAMAG-----------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-- 760 (1057)
T ss_pred CCeEEEEECC-----------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--
Confidence 5788887532 25689999887766544322110 01111233333 3468887542
Q ss_pred CCCceeeeCcEEEEEcCCCceEEeccCCC-------------CCCCCCcee--eeEEEe-CCEEEEEecccCCCCCcccC
Q 006384 201 TLREVRYYNDLYVFDLDQFKWQEIKPRFG-------------SMWPSPRSG--FQFFVY-QDEVFLYGGYSKEVSTDKNQ 264 (647)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~W~~v~~~~~-------------~~~P~~R~~--~s~~~~-~~~Iyv~GG~~~~~~~~~~~ 264 (647)
.+.|.+||+.++....+..... +........ .++++. ++.|||....+.
T Consensus 761 -------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~-------- 825 (1057)
T PLN02919 761 -------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH-------- 825 (1057)
T ss_pred -------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCC--------
Confidence 3678999988765433221000 000000010 123333 567888876543
Q ss_pred CCCCceeeeEEEEeCCCCeEEEeecCCCC-------CCCc--eeeEEEEE-CCeEEEecceeccccCccccccccCCcEE
Q 006384 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMP-------PGPR--AGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 265 ~~~~~~~~dv~~yd~~t~~W~~v~~~g~~-------P~~R--~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
.|.+||+.+.....+...|.. .... .-+++++- +++|||.-.. -+.|.
T Consensus 826 --------rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~--------------Nn~Ir 883 (1057)
T PLN02919 826 --------KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN--------------NSLIR 883 (1057)
T ss_pred --------EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC--------------CCEEE
Confidence 388999988888777654321 0011 11233443 5778887543 35689
Q ss_pred EEECCCCc
Q 006384 335 GFQLDNHR 342 (647)
Q Consensus 335 ~yd~~t~~ 342 (647)
++|+.+.+
T Consensus 884 vid~~~~~ 891 (1057)
T PLN02919 884 YLDLNKGE 891 (1057)
T ss_pred EEECCCCc
Confidence 99998875
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=84.76 E-value=45 Score=33.31 Aligned_cols=163 Identities=12% Similarity=0.091 Sum_probs=85.2
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCC--C-CCCcceeEEEEECCEEEEEeCCcCCCCCccccccCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN--S-PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~--~-P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
++.||+.... .+.++|+.+.+++.+.... . +..+..-.++.-++.||+.--....... .....
T Consensus 51 ~g~l~v~~~~-----------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~---~~~g~ 116 (246)
T PF08450_consen 51 DGRLYVADSG-----------GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASG---IDPGS 116 (246)
T ss_dssp TSEEEEEETT-----------CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTC---GGSEE
T ss_pred CCEEEEEEcC-----------ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccc---ccccc
Confidence 6888887662 3466799999998776531 1 2333333333336788886432221111 00156
Q ss_pred EEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCC
Q 006384 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWP 233 (647)
Q Consensus 158 v~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P 233 (647)
+|++++. .+...+... -....++++- ++.||+.-- ..+.|+.|++.... +....... ..+
T Consensus 117 v~~~~~~-~~~~~~~~~----~~~pNGi~~s~dg~~lyv~ds---------~~~~i~~~~~~~~~~~~~~~~~~~--~~~ 180 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADG----LGFPNGIAFSPDGKTLYVADS---------FNGRIWRFDLDADGGELSNRRVFI--DFP 180 (246)
T ss_dssp EEEEETT-SEEEEEEEE----ESSEEEEEEETTSSEEEEEET---------TTTEEEEEEEETTTCCEEEEEEEE--E-S
T ss_pred eEEECCC-CeEEEEecC----cccccceEECCcchheeeccc---------ccceeEEEeccccccceeeeeeEE--EcC
Confidence 9999998 666655431 1222344444 346777432 24569999886432 43222110 001
Q ss_pred CC-ceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 234 SP-RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 234 ~~-R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
.. ..--++++- ++.|||..-... .|++|++....-..+..
T Consensus 181 ~~~g~pDG~~vD~~G~l~va~~~~~----------------~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 181 GGPGYPDGLAVDSDGNLWVADWGGG----------------RIVVFDPDGKLLREIEL 222 (246)
T ss_dssp SSSCEEEEEEEBTTS-EEEEEETTT----------------EEEEEETTSCEEEEEE-
T ss_pred CCCcCCCcceEcCCCCEEEEEcCCC----------------EEEEECCCccEEEEEcC
Confidence 11 112234444 788888743222 48999999766666653
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=84.29 E-value=29 Score=38.18 Aligned_cols=153 Identities=11% Similarity=0.044 Sum_probs=82.7
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
.++|++|+.+++=+.+... + .........-++ +|++.-...+ ..++|.+|+.+..+++++..+.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~--~-g~~~~~~~SPDG~~la~~~~~~g-------~~~Iy~~dl~~g~~~~LT~~~~----- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS--Q-GMLVVSDVSKDGSKLLLTMAPKG-------QPDIYLYDTNTKTLTQITNYPG----- 277 (419)
T ss_pred CEEEEEECCCCcEEEEecC--C-CcEEeeEECCCCCEEEEEEccCC-------CcEEEEEECCCCcEEEcccCCC-----
Confidence 4689999988876666431 1 111111222244 5554433211 3589999999999998876521
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecc
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG 314 (647)
.-........+..||+.....+ ..++|++|+.+...+++...+. ... ...-+++.++|-.
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g--------------~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~ 337 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG--------------YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSS 337 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC--------------CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEE
Confidence 1111122222456666543321 2479999999888877754321 112 1222444444433
Q ss_pred eeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
...... ......+|+++|+.+..+..|..
T Consensus 338 ~~~~~~-----~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 338 RETNNE-----FGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred cCCCcc-----cCCCCcEEEEEECCCCCeEECCC
Confidence 221100 01113589999999998887765
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=83.98 E-value=69 Score=34.82 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=84.9
Q ss_pred eCcEEEEECCCC-----eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCc---EEE-
Q 006384 100 YGDLYRYDVEKQ-----EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQ- 170 (647)
Q Consensus 100 ~ndl~~yd~~~~-----~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~---W~~- 170 (647)
.+.+|.++.... .|+.+... ..-..+.+...++.+|+....... ...|..+++.+.. |..
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~---~~~~~~~v~~~~~~~yi~Tn~~a~--------~~~l~~~~l~~~~~~~~~~~ 319 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPR---EDGVEYYVDHHGDRLYILTNDDAP--------NGRLVAVDLADPSPAEWWTV 319 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEES---SSS-EEEEEEETTEEEEEE-TT-T--------T-EEEEEETTSTSGGGEEEE
T ss_pred CCeEEEEeccccCCCcCCcEEEeCC---CCceEEEEEccCCEEEEeeCCCCC--------CcEEEEecccccccccceeE
Confidence 378999999875 89888642 222333444558999998764332 3568888988775 664
Q ss_pred cccCCCCCC-cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcC-CCceEEeccCCCCCCCCCceeeeEEEe---C
Q 006384 171 LNLKGCPSP-RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKWQEIKPRFGSMWPSPRSGFQFFVY---Q 245 (647)
Q Consensus 171 ~~~~~~P~~-R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~~W~~v~~~~~~~~P~~R~~~s~~~~---~ 245 (647)
+.+ +.. ..--.+.+.+++|++.-=.+. ...|.+|++. +..-..++. |..- ....... .
T Consensus 320 l~~---~~~~~~l~~~~~~~~~Lvl~~~~~~-------~~~l~v~~~~~~~~~~~~~~------p~~g-~v~~~~~~~~~ 382 (414)
T PF02897_consen 320 LIP---EDEDVSLEDVSLFKDYLVLSYRENG-------SSRLRVYDLDDGKESREIPL------PEAG-SVSGVSGDFDS 382 (414)
T ss_dssp EE-----SSSEEEEEEEEETTEEEEEEEETT-------EEEEEEEETT-TEEEEEEES------SSSS-EEEEEES-TT-
T ss_pred EcC---CCCceeEEEEEEECCEEEEEEEECC-------ccEEEEEECCCCcEEeeecC------Ccce-EEeccCCCCCC
Confidence 332 223 234455667889888754322 5678999998 333333332 2211 1111111 3
Q ss_pred C-EEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 246 D-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 246 ~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
+ ..|.+.+.. .-..+|.||+.+.+.+.++
T Consensus 383 ~~~~~~~ss~~--------------~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 383 DELRFSYSSFT--------------TPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp SEEEEEEEETT--------------EEEEEEEEETTTTCEEEEE
T ss_pred CEEEEEEeCCC--------------CCCEEEEEECCCCCEEEEE
Confidence 3 344455543 3357999999999888765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.67 E-value=33 Score=35.15 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=77.1
Q ss_pred EEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC-cce
Q 006384 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-RSG 182 (647)
Q Consensus 105 ~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~-R~~ 182 (647)
++||.++.-+..+.+. .-.-+.+|+. ++.+|+.-= .-+-+-+.|+.+..=+.++. |.+ ..+
T Consensus 172 rLdPa~~~i~vfpaPq---G~gpyGi~atpdGsvwyasl-----------agnaiaridp~~~~aev~p~---P~~~~~g 234 (353)
T COG4257 172 RLDPARNVISVFPAPQ---GGGPYGICATPDGSVWYASL-----------AGNAIARIDPFAGHAEVVPQ---PNALKAG 234 (353)
T ss_pred ecCcccCceeeeccCC---CCCCcceEECCCCcEEEEec-----------cccceEEcccccCCcceecC---CCccccc
Confidence 5567666555554432 2223444554 677777521 11456677888776555543 333 122
Q ss_pred eEEEE--ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCC
Q 006384 183 HRMVL--YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (647)
Q Consensus 183 h~~~~--~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~ 260 (647)
.+-+. --+++++.-- -...++.||+.+..|..-+... ..+|-....+--.+.+++.--
T Consensus 235 sRriwsdpig~~wittw---------g~g~l~rfdPs~~sW~eypLPg----s~arpys~rVD~~grVW~sea------- 294 (353)
T COG4257 235 SRRIWSDPIGRAWITTW---------GTGSLHRFDPSVTSWIEYPLPG----SKARPYSMRVDRHGRVWLSEA------- 294 (353)
T ss_pred ccccccCccCcEEEecc---------CCceeeEeCcccccceeeeCCC----CCCCcceeeeccCCcEEeecc-------
Confidence 22222 2456776511 1357999999999999876541 223333222323556665322
Q ss_pred cccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
-.+-+.+||+.+.+.+.+.
T Consensus 295 ---------~agai~rfdpeta~ftv~p 313 (353)
T COG4257 295 ---------DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred ---------ccCceeecCcccceEEEec
Confidence 1234889999999999874
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=83.32 E-value=95 Score=37.18 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=33.0
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEE-EcccCCCCCCcceeEEEEE---CCEEEEEecccCCCCceeeeC
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYN 209 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~-~~~~~~~P~~R~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~ 209 (647)
++.+++.||.. ..+.+||+.+..-. .+.. . ....++.+ ++.++++|+.+ +
T Consensus 587 ~~~~L~Sgs~D-----------g~v~iWd~~~~~~~~~~~~---~---~~v~~v~~~~~~g~~latgs~d---------g 640 (793)
T PLN00181 587 DPTLLASGSDD-----------GSVKLWSINQGVSIGTIKT---K---ANICCVQFPSESGRSLAFGSAD---------H 640 (793)
T ss_pred CCCEEEEEcCC-----------CEEEEEECCCCcEEEEEec---C---CCeEEEEEeCCCCCEEEEEeCC---------C
Confidence 35677777743 34778888765322 1211 1 11122222 46677777742 4
Q ss_pred cEEEEEcCCC
Q 006384 210 DLYVFDLDQF 219 (647)
Q Consensus 210 dv~~yD~~t~ 219 (647)
.+.+||+.+.
T Consensus 641 ~I~iwD~~~~ 650 (793)
T PLN00181 641 KVYYYDLRNP 650 (793)
T ss_pred eEEEEECCCC
Confidence 6888998754
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=83.21 E-value=86 Score=35.34 Aligned_cols=64 Identities=8% Similarity=-0.093 Sum_probs=34.4
Q ss_pred CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEE
Q 006384 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 135 ~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (647)
+.+++.||.. ..|.+||+.+..-...-. + ............++.+++.|+.+ ..+.+|
T Consensus 138 ~~iLaSgs~D-----------gtVrIWDl~tg~~~~~l~-~-h~~~V~sla~spdG~lLatgs~D---------g~IrIw 195 (493)
T PTZ00421 138 MNVLASAGAD-----------MVVNVWDVERGKAVEVIK-C-HSDQITSLEWNLDGSLLCTTSKD---------KKLNII 195 (493)
T ss_pred CCEEEEEeCC-----------CEEEEEECCCCeEEEEEc-C-CCCceEEEEEECCCCEEEEecCC---------CEEEEE
Confidence 3577777643 357888988765322111 0 11111111112256777777753 357889
Q ss_pred EcCCCc
Q 006384 215 DLDQFK 220 (647)
Q Consensus 215 D~~t~~ 220 (647)
|+.+.+
T Consensus 196 D~rsg~ 201 (493)
T PTZ00421 196 DPRDGT 201 (493)
T ss_pred ECCCCc
Confidence 988765
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=83.02 E-value=75 Score=35.71 Aligned_cols=127 Identities=14% Similarity=0.084 Sum_probs=64.7
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC--cEEEcccCC-C-CCCc-ceeEEEEEC-CEEEEEecccCCCC
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKG-C-PSPR-SGHRMVLYK-HKIIVFGGFYDTLR 203 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~~-~-P~~R-~~h~~~~~~-~~lyv~GG~~~~~~ 203 (647)
-++.++.||+.... ..++.+|..+. .|+.-.... . ..+. .....++.+ ++||+...
T Consensus 57 Pvv~~g~vy~~~~~------------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------ 118 (488)
T cd00216 57 PLVVDGDMYFTTSH------------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------ 118 (488)
T ss_pred CEEECCEEEEeCCC------------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------
Confidence 35668999986542 45888998876 487643211 0 0011 111234456 77776432
Q ss_pred ceeeeCcEEEEEcCCCc--eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC
Q 006384 204 EVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (647)
Q Consensus 204 ~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (647)
-..|+.||..+.+ |+.-..... .+......+.++.++.+| +|....... .......+++||..+
T Consensus 119 ----~g~v~AlD~~TG~~~W~~~~~~~~--~~~~~i~ssP~v~~~~v~-vg~~~~~~~-------~~~~~g~v~alD~~T 184 (488)
T cd00216 119 ----DGRLVALDAETGKQVWKFGNNDQV--PPGYTMTGAPTIVKKLVI-IGSSGAEFF-------ACGVRGALRAYDVET 184 (488)
T ss_pred ----CCeEEEEECCCCCEeeeecCCCCc--CcceEecCCCEEECCEEE-Eeccccccc-------cCCCCcEEEEEECCC
Confidence 2468999988654 876433210 000011223345566555 443222100 001234689999865
Q ss_pred --CeEEEee
Q 006384 282 --WEWSKVK 288 (647)
Q Consensus 282 --~~W~~v~ 288 (647)
..|+.-.
T Consensus 185 G~~~W~~~~ 193 (488)
T cd00216 185 GKLLWRFYT 193 (488)
T ss_pred CceeeEeec
Confidence 4687643
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=82.60 E-value=62 Score=33.27 Aligned_cols=187 Identities=15% Similarity=0.117 Sum_probs=100.9
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
-+-++|+++..-+..+-+. -.+-.+.-..++ .+.|+..|-. . ++. ++|+.++.-+..+. |..
T Consensus 125 aI~R~dpkt~evt~f~lp~-~~a~~nlet~vfD~~G~lWFt~q~-G--------~yG---rLdPa~~~i~vfpa---PqG 188 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPL-EHADANLETAVFDPWGNLWFTGQI-G--------AYG---RLDPARNVISVFPA---PQG 188 (353)
T ss_pred eeEEecCcccceEEeeccc-ccCCCcccceeeCCCccEEEeecc-c--------cce---ecCcccCceeeecc---CCC
Confidence 6778899888777665321 111222222334 3567766532 1 111 67787776655543 322
Q ss_pred cceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe---CCEEEEEeccc
Q 006384 180 RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY---QDEVFLYGGYS 255 (647)
Q Consensus 180 R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~---~~~Iyv~GG~~ 255 (647)
-.-.++|+ -++.+|+.-= +-|-+-..|+.+..=..++. |.+....+-.+. .+.+++.--
T Consensus 189 ~gpyGi~atpdGsvwyasl---------agnaiaridp~~~~aev~p~------P~~~~~gsRriwsdpig~~wittw-- 251 (353)
T COG4257 189 GGPYGICATPDGSVWYASL---------AGNAIARIDPFAGHAEVVPQ------PNALKAGSRRIWSDPIGRAWITTW-- 251 (353)
T ss_pred CCCcceEECCCCcEEEEec---------cccceEEcccccCCcceecC------CCcccccccccccCccCcEEEecc--
Confidence 22233443 4777776421 12456677877775444433 222111111111 445555421
Q ss_pred CCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEE
Q 006384 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
....+++|||....|..-+-.+.- +|. .++-+- .+++++--- -.+.|.
T Consensus 252 --------------g~g~l~rfdPs~~sW~eypLPgs~--arp-ys~rVD~~grVW~sea--------------~agai~ 300 (353)
T COG4257 252 --------------GTGSLHRFDPSVTSWIEYPLPGSK--ARP-YSMRVDRHGRVWLSEA--------------DAGAIG 300 (353)
T ss_pred --------------CCceeeEeCcccccceeeeCCCCC--CCc-ceeeeccCCcEEeecc--------------ccCcee
Confidence 223589999999999987653322 232 233222 455555211 146799
Q ss_pred EEECCCCcEEEeEecCCC
Q 006384 335 GFQLDNHRWYPLELRKEK 352 (647)
Q Consensus 335 ~yd~~t~~W~~l~~~~~~ 352 (647)
+||+.+.+.+.++...+.
T Consensus 301 rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 301 RFDPETARFTVLPIPRPN 318 (353)
T ss_pred ecCcccceEEEecCCCCC
Confidence 999999999999985544
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=82.28 E-value=31 Score=30.93 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=58.5
Q ss_pred EEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCC
Q 006384 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (647)
Q Consensus 186 ~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (647)
+.++|-||-..-... ...+.+..||+.+.+|+.+..+ ...........++.++|+|-++.-....
T Consensus 2 icinGvly~~a~~~~-----~~~~~IvsFDv~~E~f~~i~~P--~~~~~~~~~~~L~~~~G~L~~v~~~~~~-------- 66 (129)
T PF08268_consen 2 ICINGVLYWLAWSED-----SDNNVIVSFDVRSEKFRFIKLP--EDPYSSDCSSTLIEYKGKLALVSYNDQG-------- 66 (129)
T ss_pred EEECcEEEeEEEECC-----CCCcEEEEEEcCCceEEEEEee--eeeccccCccEEEEeCCeEEEEEecCCC--------
Confidence 456787877665411 1357899999999999988763 1113445566777779998887654432
Q ss_pred CCCceeeeEEEEe-CCCCeEEEeec
Q 006384 266 EKGIIHSDLWSLD-PRTWEWSKVKK 289 (647)
Q Consensus 266 ~~~~~~~dv~~yd-~~t~~W~~v~~ 289 (647)
....-++|+++ .....|++...
T Consensus 67 --~~~~~~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 67 --EPDSIDIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred --CcceEEEEEeeccccceEEEEEE
Confidence 02345799994 66789998754
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=81.35 E-value=88 Score=34.19 Aligned_cols=68 Identities=12% Similarity=0.133 Sum_probs=36.2
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
++.+|++|-. .-+++=.-.-.+|+.++.+.. .+-..+.+..+ ++.+++.|.. ..++
T Consensus 146 ~~~g~~vG~~----------G~il~T~DgG~tW~~~~~~~~-~p~~~~~i~~~~~~~~~ivg~~------------G~v~ 202 (398)
T PLN00033 146 GKEGWIIGKP----------AILLHTSDGGETWERIPLSPK-LPGEPVLIKATGPKSAEMVTDE------------GAIY 202 (398)
T ss_pred CCEEEEEcCc----------eEEEEEcCCCCCceECccccC-CCCCceEEEEECCCceEEEecc------------ceEE
Confidence 5677777541 123332333578998765311 12223334444 3567777742 2355
Q ss_pred EEECCCCcEEEc
Q 006384 160 MLDLKTNQWEQL 171 (647)
Q Consensus 160 ~yD~~t~~W~~~ 171 (647)
+-+-.-.+|+.+
T Consensus 203 ~S~D~G~tW~~~ 214 (398)
T PLN00033 203 VTSNAGRNWKAA 214 (398)
T ss_pred EECCCCCCceEc
Confidence 555455689987
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=81.13 E-value=92 Score=34.24 Aligned_cols=182 Identities=11% Similarity=0.007 Sum_probs=88.6
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P 177 (647)
..+|++|+.+.+=+.+... +. .. ....+ +..|++...... ..++|.+|+.+....++... .
T Consensus 220 ~~I~~~dl~~g~~~~l~~~--~g--~~-~~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~ 283 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF--KG--SN-SAPAWSPDGRTLAVALSRDG---------NSQIYTVNADGSGLRRLTQS--S 283 (427)
T ss_pred cEEEEEECCCCCEEEeecC--CC--Cc-cceEECCCCCEEEEEEccCC---------CceEEEEECCCCCcEECCCC--C
Confidence 3699999988866655431 11 11 12222 345554433211 25799999988876666431 1
Q ss_pred CCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCC
Q 006384 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (647)
Q Consensus 178 ~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~ 257 (647)
.........-+++.++|..... + ...+|.++..+.....+.... ...........+..|++......
T Consensus 284 -~~~~~~~wSpDG~~l~f~s~~~-g-----~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g- 350 (427)
T PRK02889 284 -GIDTEPFFSPDGRSIYFTSDRG-G-----APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG- 350 (427)
T ss_pred -CCCcCeEEcCCCCEEEEEecCC-C-----CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCC-
Confidence 1111112222444333432111 1 246888888888777775331 00111111112444444332211
Q ss_pred CCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEE
Q 006384 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (647)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd 337 (647)
. ..++++|+.+.....+..... ...-...-+++.++|..... -...+++++
T Consensus 351 -----------~--~~I~v~d~~~g~~~~lt~~~~-----~~~p~~spdg~~l~~~~~~~-----------g~~~l~~~~ 401 (427)
T PRK02889 351 -----------A--FKLYVQDLATGQVTALTDTTR-----DESPSFAPNGRYILYATQQG-----------GRSVLAAVS 401 (427)
T ss_pred -----------c--EEEEEEECCCCCeEEccCCCC-----ccCceECCCCCEEEEEEecC-----------CCEEEEEEE
Confidence 1 258999998877776643210 01111122666666655322 023477877
Q ss_pred CCC
Q 006384 338 LDN 340 (647)
Q Consensus 338 ~~t 340 (647)
+..
T Consensus 402 ~~g 404 (427)
T PRK02889 402 SDG 404 (427)
T ss_pred CCC
Confidence 743
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=80.76 E-value=30 Score=30.97 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=56.7
Q ss_pred EECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccC-CCCCCcceeEEEEECCEEEEEecccCCCCceeeeCc
Q 006384 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYND 210 (647)
Q Consensus 132 ~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~-~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~d 210 (647)
.++|.||-..-. .. ...+-+.+||+.+.+|+.+..+ ...........+.++++|-++.-..... ...-+
T Consensus 3 cinGvly~~a~~-~~------~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~---~~~~~ 72 (129)
T PF08268_consen 3 CINGVLYWLAWS-ED------SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE---PDSID 72 (129)
T ss_pred EECcEEEeEEEE-CC------CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC---cceEE
Confidence 456777776654 11 1246799999999999988763 1134455667788899998876543221 12347
Q ss_pred EEEE-EcCCCceEEeccC
Q 006384 211 LYVF-DLDQFKWQEIKPR 227 (647)
Q Consensus 211 v~~y-D~~t~~W~~v~~~ 227 (647)
+|++ |.....|++....
T Consensus 73 iWvLeD~~k~~Wsk~~~~ 90 (129)
T PF08268_consen 73 IWVLEDYEKQEWSKKHIV 90 (129)
T ss_pred EEEeeccccceEEEEEEE
Confidence 8888 5667889987553
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=80.45 E-value=95 Score=33.96 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=60.4
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCC--CCCCc-ceeEEEEECCEEEEEeCCcCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN--SPPPR-SAHQAVSWKNYLYIFGGEFTS 146 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~--~P~~R-~~ha~v~~~~~iyv~GG~~~~ 146 (647)
.-..+.+.|...++.|++|-. .-+..-+=--.+|.....+. .+..+ ...++...++.+|++|-.
T Consensus 89 ~L~~V~F~~~d~~~GwAVG~~----------G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~--- 155 (398)
T PLN00033 89 VLLDIAFVPDDPTHGFLLGTR----------QTLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP--- 155 (398)
T ss_pred ceEEEEeccCCCCEEEEEcCC----------CEEEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc---
Confidence 445555533224688888862 12333233356898754221 11111 234444557778888531
Q ss_pred CCCccccccCcEEEEECCCCcEEEcccCCC-CCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
.-+++=.-.-.+|+.+..... |.. .+....+ .+.++++|.. ..+++-+-.-..|+.+
T Consensus 156 ---------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~----------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 156 ---------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE----------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred ---------eEEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc----------ceEEEECCCCCCceEc
Confidence 122222223468998865211 222 2333334 4567777742 2344444445689987
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=80.35 E-value=71 Score=35.47 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=24.1
Q ss_pred cEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEc
Q 006384 167 QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (647)
Q Consensus 167 ~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~ 216 (647)
+-..+.+.++...|...+.|.| ++++ |.+|+.+ .+|.+++.
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~D--------GSIQ~W~~ 346 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLD--------GSIQIWDK 346 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcch-hhhcccC--------Cceeeeec
Confidence 3444555445567777777877 3455 6666643 34566654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 647 | ||||
| 2woz_A | 318 | The Novel Beta-Propeller Of The Btb-Kelch Protein K | 5e-05 | ||
| 4asc_A | 315 | Crystal Structure Of The Kelch Domain Of Human Kbtb | 4e-04 |
| >pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318 | Back alignment and structure |
|
| >pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5 Length = 315 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 7e-36
Identities = 47/285 (16%), Positives = 95/285 (33%), Gaps = 35/285 (12%)
Query: 41 DAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVY 100
+ + LSI ++ K + V + P R + + +L+L GG
Sbjct: 413 EILQLSIHYDKIDMKNIEVSSS-EVPVARMCHTFTTIS-RNNQLLLIGGR--KAPHQG-L 467
Query: 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGGEFTSPNQERFHHYKDFW 159
D + +D++ +EW +I + R H A S + + I GG P
Sbjct: 468 SDNWIFDMKTREWSMI--KSLSHTRFRHSACSLPDGNVLILGGVTEGP---------AML 516
Query: 160 MLDLKTNQWEQLNLKG-CPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFD 215
+ ++ ++ + K + + + I+ GG + V ++ +D
Sbjct: 517 LYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD 576
Query: 216 LDQFKWQEIKPRFGSMWPSPRSGFQF-FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
+ + R G Q ++ ++ + GG S D+ + +
Sbjct: 577 AENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDR--------TNSI 628
Query: 275 WSLDPRTWEWSKVKKIGMPPGP----RAGFSMC-VHKKRALLFGG 314
SLDP + + + AGFS+ + GG
Sbjct: 629 ISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 117 bits (293), Expect = 2e-27
Identities = 33/264 (12%), Positives = 70/264 (26%), Gaps = 46/264 (17%)
Query: 91 FYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150
F + ++ E + P R N ++ GG
Sbjct: 354 FAFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYR--- 410
Query: 151 RFHHYKDFWMLDLKTNQWEQLNLK----GCPSPRSGHRMVLYKH--KIIVFGGFYDTLRE 204
+ L + ++ + N++ P R H ++++ GG
Sbjct: 411 ----VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKA---P 463
Query: 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQD-EVFLYGGYSKEVSTDKN 263
+ +D ++FD+ +W IK R D V + GG ++
Sbjct: 464 HQGLSDNWIFDMKTREWSMIKS-----LSHTRFRHSACSLPDGNVLILGGVTEG------ 512
Query: 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH----KKRALLFGGVVDME 319
+ + + V + K+ +L GG +D
Sbjct: 513 --------PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQT 564
Query: 320 MKGDVIMSLFLNELYGFQLDNHRW 343
D ++ + +N
Sbjct: 565 TVSDKA------IIFKYDAENATE 582
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 3e-29
Identities = 43/252 (17%), Positives = 81/252 (32%), Gaps = 53/252 (21%)
Query: 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL--KTNQWEQLNLKGC 176
P +P P + + +YI G + ++ LD K +W L
Sbjct: 4 PETPVPFKSGTGAIDNDTVYIGLGSAGT----------AWYKLDTQAKDKKWTA--LAAF 51
Query: 177 P-SPRSGHRMVLYKHKIIVFGGF-YDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234
P PR + VFGG ++ + +ND++ ++ W ++ S P
Sbjct: 52 PGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKL----MSHAPM 107
Query: 235 PRSGFQFFVYQDEVFLYGGYSKEVSTD--------KNQSEK---------------GIIH 271
+G FV+ + ++ GG ++ + S +
Sbjct: 108 GMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFN 167
Query: 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLN 331
L S DP T +WS + P AG ++ + L G E K + +
Sbjct: 168 KFLLSFDPSTQQWSYAGE--SPWYGTAGAAVVNKGDKTWLING----EAKPGL----RTD 217
Query: 332 ELYGFQLDNHRW 343
++ +
Sbjct: 218 AVFELDFTGNNL 229
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 5e-28
Identities = 47/325 (14%), Positives = 92/325 (28%), Gaps = 71/325 (21%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP 123
P P + + + + + G G Y + ++W ++
Sbjct: 5 ETPVPFKSGTGA---IDNDTVYIGLG--SAGTAWYKL----DTQAKDKKWTALA-AFPGG 54
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGH 183
PR + LY+FGG + + D + KTN W +L P +GH
Sbjct: 55 PRDQATSAFIDGNLYVFGGIGKNSEGLT-QVFNDVHKYNPKTNSWVKLM-SHAPMGMAGH 112
Query: 184 RMVLYKHKIIVFGGF-----------YDTLR-------------------EVRYYNDLYV 213
++ K V GG + + + L
Sbjct: 113 VTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172
Query: 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSD 273
FD +W G +G D+ +L G +K G+
Sbjct: 173 FDPSTQQWSYA----GESPWYGTAGAAVVNKGDKTWLINGEAKP----------GLRTDA 218
Query: 274 LWSL--DPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKG--------- 322
++ L +W+K+ + P G AG + + GG +
Sbjct: 219 VFELDFTGNNLKWNKLAPVSSPDG-VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYA 277
Query: 323 -DVIMSLFLNELYGFQLDNHRWYPL 346
+ + + +++ + +W
Sbjct: 278 HEGLKKSYSTDIHLWHNG--KWDKS 300
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 5e-27
Identities = 45/296 (15%), Positives = 81/296 (27%), Gaps = 54/296 (18%)
Query: 84 LILYGGEFYNGNKTY-VYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142
L ++GG N V+ D+++Y+ + W + S P + H Y+ GG
Sbjct: 68 LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGG 126
Query: 143 ---------------------EFTSPNQERFHH-------YKDFWMLDLKTNQWEQLNLK 174
N F K D T QW
Sbjct: 127 VNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYA--G 184
Query: 175 GCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233
P +G +V K + G + + ++ D + P
Sbjct: 185 ESPWYGTAGAAVVNKGDKTWLINGE---AKPGLRTDAVFELDFTGNNLKW-NKLAPVSSP 240
Query: 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIH---SDLWSL---DPRTWEWSKV 287
+G + D + GG + S + Q+ K H +S +W K
Sbjct: 241 DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300
Query: 288 KKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343
++ RA L+ GG G + + + +++
Sbjct: 301 GEL---SQGRAYGVSLPWNNSLLIIGGETA---GGKA-----VTDSVLITVKDNKV 345
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 3e-13
Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 21/152 (13%)
Query: 84 LILYGGEFYNGNKT-YVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142
L GE G +T V+ + +W ++ +SP + A + L GG
Sbjct: 203 TWLINGEAKPGLRTDAVF--ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGG 260
Query: 143 EFTSPNQERFHHYKDFW-----------MLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKH 190
++E + + K++ + +W++ L R+ + + +
Sbjct: 261 AGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL---SQGRAYGVSLPWNN 317
Query: 191 KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222
+++ GG + D + + K
Sbjct: 318 SLLIIGGETA---GGKAVTDSVLITVKDNKVT 346
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 35/200 (17%), Positives = 66/200 (33%), Gaps = 25/200 (12%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
YD +W + + H +S +Y GG+ ++ + K
Sbjct: 131 CYDPVAAKWSEVKNLPIK--VYGHNVISHNGMIYCLGGKTDDKK-----CTNRVFIYNPK 183
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
W+ L +PRS + ++K KI++ GG + + FDL KW+ +
Sbjct: 184 KGDWKDL--APMKTPRSMFGVAIHKGKIVIAGGVTED----GLSASVEAFDLKTNKWEVM 237
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
P RS ++ GG++ K + + +D+W + EW
Sbjct: 238 TE----F-PQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEV--NDIWKYEDDKKEW 290
Query: 285 SKVKKIGMPPGPRAGFSMCV 304
+ + R
Sbjct: 291 AGM-----LKEIRYASGASC 305
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 44/285 (15%), Positives = 110/285 (38%), Gaps = 37/285 (12%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTY--VYGDLYRYDVEKQEWKVISSPNS 121
PR++ S+ ++ ++ + GG + + + ++ D EW + S
Sbjct: 42 AEQIPRNHSSIVT---QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS 98
Query: 122 PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPR 180
R + +Y+ G+ + + D +W ++ NL P
Sbjct: 99 A--RCLFGLGEVDDKIYVVAGK----DLQTEASLDSVLCYDPVAAKWSEVKNL---PIKV 149
Query: 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240
GH ++ + I GG D + N +++++ + W+++ P M +PRS F
Sbjct: 150 YGHNVISHNGMIYCLGGKTDDKK---CTNRVFIYNPKKGDWKDLAP----M-KTPRSMFG 201
Query: 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300
+++ ++ + GG +++ + + + + D +T +W + + P R+
Sbjct: 202 VAIHKGKIVIAGGVTEDGLS-----------ASVEAFDLKTNKWEVMTEF---PQERSSI 247
Query: 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345
S+ GG ++++ +N+++ ++ D W
Sbjct: 248 SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 5e-23
Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 27/220 (12%)
Query: 98 YVYGD--LYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHY 155
+ D YD + E + + PR+ V+ +N +Y+ GG + +
Sbjct: 19 LLVNDTAAVAYDPMENECYLTALAE-QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQ 77
Query: 156 KDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214
F+ LD +++W L L PS R + KI V G + + +
Sbjct: 78 SYFFQLDNVSSEWVGLPPL---PSARCLFGLGEVDDKIYVVAGKDLQTEA--SLDSVLCY 132
Query: 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
D KW E+K + P G + ++ GG + + + +
Sbjct: 133 DPVAAKWSEVKN----L-PIKVYGHNVISHNGMIYCLGGKTDDKK----------CTNRV 177
Query: 275 WSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
+ +P+ +W + M PR+ F + +HK + ++ GG
Sbjct: 178 FIYNPKKGDWKDLAP--M-KTPRSMFGVAIHKGKIVIAGG 214
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 34/211 (16%), Positives = 63/211 (29%), Gaps = 25/211 (11%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
YD +W H +S + +Y+ GG S + + D K
Sbjct: 121 CYDRLSFKWGESDPLPYV--VYGHTVLSHMDLVYVIGG-KGSDRK----CLNKMCVYDPK 173
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
+W++L + RS ++ +IIV G DT + V+ + KW
Sbjct: 174 KFEWKEL--APMQTARSLFGATVHDGRIIVAAGVTDT----GLTSSAEVYSITDNKWAPF 227
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
+ P RS ++ GG++ + + +D+W + +W
Sbjct: 228 EA----F-PQERSSLSLVSLVGTLYAIGGFATLETESGELVPTEL--NDIWRYNEEEKKW 280
Query: 285 SKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315
V R +
Sbjct: 281 EGV-----LREIAYAAGATFLPVRLNVLRLT 306
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 46/220 (20%), Positives = 82/220 (37%), Gaps = 26/220 (11%)
Query: 98 YVYG--DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHY 155
++ YD E S + P++ V+ +N +++ GG F + + +
Sbjct: 8 FMISEEGAVAYDPAANECYCASLSS-QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66
Query: 156 KDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214
F D ++W + L PSPR + + I V GG + R + + +
Sbjct: 67 AYFLQFDHLDSEWLGMPPL---PSPRCLFGLGEALNSIYVVGG-REIKDGERCLDSVMCY 122
Query: 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDL 274
D FKW E P + P G + D V++ GG + + +
Sbjct: 123 DRLSFKWGESDP----L-PYVVYGHTVLSHMDLVYVIGGKGSDRK----------CLNKM 167
Query: 275 WSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
DP+ +EW ++ M R+ F VH R ++ G
Sbjct: 168 CVYDPKKFEWKELAP--M-QTARSLFGATVHDGRIIVAAG 204
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 53/286 (18%), Positives = 103/286 (36%), Gaps = 36/286 (12%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNS 121
+ P+++ SL KE ++ + GG FYN + + ++D EW + S
Sbjct: 31 SSQVPKNHVSLVT---KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS 87
Query: 122 PPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPR 180
P R N +Y+ GG + D + +W + L P
Sbjct: 88 P--RCLFGLGEALNSIYVVGGREIKDGERCL---DSVMCYDRLSFKWGESDPL---PYVV 139
Query: 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240
GH ++ + + V GG + N + V+D +F+W+E+ P M + RS F
Sbjct: 140 YGHTVLSHMDLVYVIGGKGSD---RKCLNKMCVYDPKKFEWKELAP----M-QTARSLFG 191
Query: 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300
V+ + + G + S +W+ + P R+
Sbjct: 192 ATVHDGRIIVAAGVTDTGL-----------TSSAEVYSITDNKWAPFEAF---PQERSSL 237
Query: 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
S+ GG +E + ++ LN+++ + + +W +
Sbjct: 238 SLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 2e-22
Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 30/204 (14%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
Y+++ EW ++ N+ RS+ LY GG + +++ +
Sbjct: 128 AYNIKSNEWFHVAPMNTR--RSSVGVGVVGGLLYAVGG-YDVASRQCL---STVECYNAT 181
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
TN+W + + RSG + + + + GG + V+D W+++
Sbjct: 182 TNEWTYI--AEMSTRRSGAGVGVLNNLLYAVGGHDGP----LVRKSVEVYDPTTNAWRQV 235
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
M R +++ GG + + +P T +W
Sbjct: 236 AD----M-NMCRRNAGVCAVNGLLYVVGGDDGSCNLASVE-----------YYNPTTDKW 279
Query: 285 SKVKKIGMPPGPRAGFSMCVHKKR 308
+ V R+ + V KR
Sbjct: 280 TVVSS--CMSTGRSYAGVTVIDKR 301
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 41/238 (17%), Positives = 76/238 (31%), Gaps = 37/238 (15%)
Query: 78 PLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYL 137
P+ +L++ G V YD +++ W ++ P R V +
Sbjct: 11 PMNLPKLMVVVGGQAPKAIRSVE----CYDFKEERWHQVAEL--PSRRCRAGMVYMAGLV 64
Query: 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFG 196
+ GG S + D +QW + N+ RS + + G
Sbjct: 65 FAVGGFNGS------LRVRTVDSYDPVKDQWTSVANM---RDRRSTLGAAVLNGLLYAVG 115
Query: 197 GFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK 256
GF + + + +++ +W + P M + RS V ++ GGY
Sbjct: 116 GFDGS----TGLSSVEAYNIKSNEWFHVAP----M-NTRRSSVGVGVVGGLLYAVGGYD- 165
Query: 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
S + + T EW+ + + M R+G + V GG
Sbjct: 166 --------VASRQCLSTVECYNATTNEWTYIAE--MST-RRSGAGVGVLNNLLYAVGG 212
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 3e-19
Identities = 45/255 (17%), Positives = 82/255 (32%), Gaps = 46/255 (18%)
Query: 64 PAPSPRSN---CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN 120
PS R + + GG +NG+ + YD K +W +++
Sbjct: 47 ELPSRRCRAGMVYMA------GLVFAVGG--FNGSLRV--RTVDSYDPVKDQWTSVANMR 96
Query: 121 SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP 179
RS A LY GG + ++K+N+W + + +
Sbjct: 97 DR--RSTLGAAVLNGLLYAVGG------FDGSTGLSSVEAYNIKSNEWFHVAPM---NTR 145
Query: 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239
RS + + + GG+ R+ + + ++ +W I M + RSG
Sbjct: 146 RSSVGVGVVGGLLYAVGGYDVASRQ--CLSTVECYNATTNEWTYIAE----M-STRRSGA 198
Query: 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299
V + ++ GG+ + + DP T W +V M R
Sbjct: 199 GVGVLNNLLYAVGGHDGPLV-----------RKSVEVYDPTTNAWRQVAD--MN-MCRRN 244
Query: 300 FSMCVHKKRALLFGG 314
+C + GG
Sbjct: 245 AGVCAVNGLLYVVGG 259
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 31/192 (16%), Positives = 56/192 (29%), Gaps = 32/192 (16%)
Query: 123 PPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG 182
++ + + GG+ + D K +W Q + PS R
Sbjct: 4 VRTRLRTPMNLPKLMVVVGGQAPKA-------IRSVECYDFKEERWHQ--VAELPSRRCR 54
Query: 183 HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFF 242
MV + GGF + + +D + +W + M RS
Sbjct: 55 AGMVYMAGLVFAVGGFNGS----LRVRTVDSYDPVKDQWTSVAN----M-RDRRSTLGAA 105
Query: 243 VYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302
V ++ GG+ S + + + ++ EW V M R+ +
Sbjct: 106 VLNGLLYAVGGFDGSTG-----------LSSVEAYNIKSNEWFHVAP--M-NTRRSSVGV 151
Query: 303 CVHKKRALLFGG 314
V GG
Sbjct: 152 GVVGGLLYAVGG 163
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 6e-09
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 23/137 (16%)
Query: 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237
S R+ R + K++V G + + +D + +W ++ + PS R
Sbjct: 3 SVRTRLRTPMNLPKLMVVVGGQAP----KAIRSVECYDFKEERWHQVAE----L-PSRRC 53
Query: 238 GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297
VF GG++ + + S DP +W+ V M R
Sbjct: 54 RAGMVYMAGLVFAVGGFNGSLRVR-----------TVDSYDPVKDQWTSVA--NM-RDRR 99
Query: 298 AGFSMCVHKKRALLFGG 314
+ V GG
Sbjct: 100 STLGAAVLNGLLYAVGG 116
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 104 YRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL 163
YD W+ ++ N R + LY+ GG+ S N +Y +
Sbjct: 223 EVYDPTTNAWRQVADMNM--CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYY------NP 274
Query: 164 KTNQWEQLNLKGCPSPRSGHRMVLYKHKI 192
T++W ++ + RS + + ++
Sbjct: 275 TTDKWTVVS-SCMSTGRSYAGVTVIDKRL 302
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 3e-22
Identities = 45/252 (17%), Positives = 81/252 (32%), Gaps = 40/252 (15%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP 123
PR + + + LI G ++ + +Y+ Y+ W ++
Sbjct: 11 SGLVPRGSHAPKVG-----RLIYTAGGYFRQSLSYLE----AYNPSNGTWLRLADL--QV 59
Query: 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSG 182
PRS LY GG SP+ + TNQW + PR+
Sbjct: 60 PRSGLAGCVVGGLLYAVGGRNNSPDGNT--DSSALDCYNPMTNQWSPCAPM---SVPRNR 114
Query: 183 HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFF 242
+ + I GG + ++N + ++ ++ +W + P M + R G
Sbjct: 115 IGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWHLVAP----M-LTRRIGVGVA 165
Query: 243 VYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302
V ++ GG+ + + P EW + M R+G +
Sbjct: 166 VLNRLLYAVGGFDGTNRLNSAE-----------CYYPERNEWRMITA--MNT-IRSGAGV 211
Query: 303 CVHKKRALLFGG 314
CV GG
Sbjct: 212 CVLHNCIYAAGG 223
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 3e-22
Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 41/204 (20%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ----ERFHHYKDFWM 160
RY+ E+ EW +++ + R LY GG F N+ E +
Sbjct: 141 RYEPERDEWHLVAPMLTR--RIGVGVAVLNRLLYAVGG-FDGTNRLNSAECY-------- 189
Query: 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220
+ N+W + + RSG + + + I GG+ N + +D++
Sbjct: 190 -YPERNEWRMI--TAMNTIRSGAGVCVLHNCIYAAGGYDGQ----DQLNSVERYDVETET 242
Query: 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280
W + P M RS V+Q +++ GGY D + DP
Sbjct: 243 WTFVAP----M-KHRRSALGITVHQGRIYVLGGYDGHTFLDSVE-----------CYDPD 286
Query: 281 TWEWSKVKKIGMPPGPRAGFSMCV 304
T WS+V ++ R+G + V
Sbjct: 287 TDTWSEVTRM---TSGRSGVGVAV 307
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 7e-20
Identities = 46/255 (18%), Positives = 82/255 (32%), Gaps = 44/255 (17%)
Query: 64 PAPSPRSN---CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN 120
PRS C + L GG + + L Y+ +W + +
Sbjct: 56 DLQVPRSGLAGCVVG------GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS 109
Query: 121 SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP 179
PR+ ++Y GG H+ + + ++W + + +
Sbjct: 110 V--PRNRIGVGVIDGHIYAVGG------SHGCIHHNSVERYEPERDEWHLVAPM---LTR 158
Query: 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239
R G + + + GGF N + ++ +W+ I M + RSG
Sbjct: 159 RIGVGVAVLNRLLYAVGGF----DGTNRLNSAECYYPERNEWRMITA----M-NTIRSGA 209
Query: 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299
V + ++ GGY N E+ D T W+ V M R+
Sbjct: 210 GVCVLHNCIYAAGGYDG--QDQLNSVER---------YDVETETWTFVAP--M-KHRRSA 255
Query: 300 FSMCVHKKRALLFGG 314
+ VH+ R + GG
Sbjct: 256 LGITVHQGRIYVLGG 270
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 5e-16
Identities = 36/196 (18%), Positives = 58/196 (29%), Gaps = 29/196 (14%)
Query: 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178
+ PR +H A +Y GG F + W +L
Sbjct: 10 SSGLVPRGSH-APKVGRLIYTAGGYFRQS-------LSYLEAYNPSNGTWLRL--ADLQV 59
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
PRSG + + GG ++ + L ++ +W P M PR+
Sbjct: 60 PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP----M-SVPRNR 114
Query: 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298
V ++ GG + H+ + +P EW V M R
Sbjct: 115 IGVGVIDGHIYAVGGSHGCIH-----------HNSVERYEPERDEWHLVAP--M-LTRRI 160
Query: 299 GFSMCVHKKRALLFGG 314
G + V + GG
Sbjct: 161 GVGVAVLNRLLYAVGG 176
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 5e-22
Identities = 38/230 (16%), Positives = 64/230 (27%), Gaps = 36/230 (15%)
Query: 91 FYNGNKTYVYG-----DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
+ + ++G ++ + W I P R V W N +YI GG
Sbjct: 9 KKHDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK--RRDAACVFWDNVVYILGGSQL 66
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204
P K ++ + W P+PR + KI GG
Sbjct: 67 FP-------IKRMDCYNVVKDSWYSKLGP---PTPRDSLAACAAEGKIYTSGGSEVG--- 113
Query: 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQ 264
+D W M + R +++ GG
Sbjct: 114 NSALYLFECYDTRTESWHTKPS----M-LTQRCSHGMVEANGLIYVCGGSL-------GN 161
Query: 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
+ G + + DP T W+++ M R + K + GG
Sbjct: 162 NVSGRVLNSCEVYDPATETWTELCP--M-IEARKNHGLVFVKDKIFAVGG 208
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-21
Identities = 48/230 (20%), Positives = 69/230 (30%), Gaps = 38/230 (16%)
Query: 94 GNKTYVYG--------DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
N Y+ G + Y+V K W P +P R + A + + +Y GG
Sbjct: 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP--RDSLAACAAEGKIYTSGG-SE 111
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204
N F D +T W ++ + R H MV I V GG
Sbjct: 112 VGN----SALYLFECYDTRTESWHTKPSM---LTQRCSHGMVEANGLIYVCGGSLGNNVS 164
Query: 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQ 264
R N V+D W E+ P M R +D++F GG + D +
Sbjct: 165 GRVLNSCEVYDPATETWTELCP----M-IEARKNHGLVFVKDKIFAVGGQNGLGGLDNVE 219
Query: 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
D + EW V M P + G
Sbjct: 220 -----------YYDIKLNEWKMVSP--M-PWKGVTVKCAAVGSIVYVLAG 255
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 1e-20
Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 28/200 (14%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
YD + W S + R +H V +Y+ GG + R + D
Sbjct: 122 CYDTRTESWHTKPSMLTQ--RCSHGMVEANGLIYVCGGSLGNNVSGR--VLNSCEVYDPA 177
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
T W +L R H +V K KI GG +++ +D+ +W+ +
Sbjct: 178 TETWTEL--CPMIEARKNHGLVFVKDKIFAVGGQNGL----GGLDNVEYYDIKLNEWKMV 231
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
P M P + V++ G+ + + T +W
Sbjct: 232 SP----M-PWKGVTVKCAAVGSIVYVLAGFQGVGRLG-----------HILEYNTETDKW 275
Query: 285 SKVKKIGMPPGPRAGFSMCV 304
K + P +CV
Sbjct: 276 VANSK--VRAFPVTSCLICV 293
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 22/156 (14%)
Query: 86 LY--GGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGE 143
+Y GG N V YD + W + R H V K+ ++ GG+
Sbjct: 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA--RKNHGLVFVKDKIFAVGGQ 209
Query: 144 FTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTL 202
+ D+K N+W+ + + P + + V GF
Sbjct: 210 NGL------GGLDNVEYYDIKLNEWKMVSPM---PWKGVTVKCAAVGSIVYVLAGF---- 256
Query: 203 REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
+ V + ++ + KW + P +
Sbjct: 257 QGVGRLGHILEYNTETDKWVAN----SKVRAFPVTS 288
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 28/137 (20%)
Query: 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237
S + R + ++I +FGG + RY+ + + W +I+ R
Sbjct: 1 SMGTRPRRKKHDYRIALFGG--SQPQSCRYF------NPKDYSWTDIRC----P-FEKRR 47
Query: 238 GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297
+ + V++ GG + + W G P PR
Sbjct: 48 DAACVFWDNVVYILGGSQ------------LFPIKRMDCYNVVKDSWYSKL--GP-PTPR 92
Query: 298 AGFSMCVHKKRALLFGG 314
+ C + + GG
Sbjct: 93 DSLAACAAEGKIYTSGG 109
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 7e-21
Identities = 39/200 (19%), Positives = 61/200 (30%), Gaps = 33/200 (16%)
Query: 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLK 164
RYD +W ++ + R V +Y GG + N D
Sbjct: 132 RYDPNIDQWSMLGDMQTA--REGAGLVVASGVIYCLGG-YDGLN-----ILNSVEKYDPH 183
Query: 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224
T W + + RSG + L I V GGF T + + + +++ W +
Sbjct: 184 TGHWTNV--TPMATKRSGAGVALLNDHIYVVGGFDGT----AHLSSVEAYNIRTDSWTTV 237
Query: 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284
SM +PR V + ++ GY + DP W
Sbjct: 238 ----TSM-TTPRCYVGATVLRGRLYAIAGYDGNSLLS-----------SIECYDPIIDSW 281
Query: 285 SKVKKIGMPPGPRAGFSMCV 304
V M R +CV
Sbjct: 282 EVVTS--M-GTQRCDAGVCV 298
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 3e-18
Identities = 48/253 (18%), Positives = 85/253 (33%), Gaps = 45/253 (17%)
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
PR+ L N + L++ GG + ++ + + +YD + QEW + S R
Sbjct: 3 QGPRTRARLGANEV----LLVVGG--FGSQQSPI-DVVEKYDPKTQEWSFLPSITRK--R 53
Query: 126 SAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ---WEQL-NLKGCPSPRS 181
+VS + +Y+ GG LD ++ W + + R
Sbjct: 54 RYVASVSLHDRIYVIGGYDGR------SRLSSVECLDYTADEDGVWYSVAPM---NVRRG 104
Query: 182 GHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQF 241
I V GGF + R + + +D + +W + M + R G
Sbjct: 105 LAGATTLGDMIYVSGGFDGS----RRHTSMERYDPNIDQWSMLGD----M-QTAREGAGL 155
Query: 242 FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301
V ++ GGY + + DP T W+ V M R+G
Sbjct: 156 VVASGVIYCLGGYDGLNILNSVE-----------KYDPHTGHWTNVTP--MAT-KRSGAG 201
Query: 302 MCVHKKRALLFGG 314
+ + + GG
Sbjct: 202 VALLNDHIYVVGG 214
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 45/231 (19%), Positives = 76/231 (32%), Gaps = 42/231 (18%)
Query: 88 GGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEF 144
GG Y+G + D E W ++ N R A + + +Y+ GG
Sbjct: 69 GG--YDGRSRL--SSVECLDYTADEDGVWYSVAPMNVR--RGLAGATTLGDMIYVSGG-- 120
Query: 145 TSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR 203
+ + D +QW L ++ + R G +V+ I GG+
Sbjct: 121 ----FDGSRRHTSMERYDPNIDQWSMLGDM---QTAREGAGLVVASGVIYCLGGY----D 169
Query: 204 EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN 263
+ N + +D W + P M + RSG + D +++ GG+ +
Sbjct: 170 GLNILNSVEKYDPHTGHWTNVTP----M-ATKRSGAGVALLNDHIYVVGGFDGTAHL--S 222
Query: 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314
E + RT W+ V M PR V + R G
Sbjct: 223 SVEA---------YNIRTDSWTTVTS--MT-TPRCYVGATVLRGRLYAIAG 261
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 6e-05
Identities = 65/488 (13%), Positives = 146/488 (29%), Gaps = 123/488 (25%)
Query: 38 DDIDAI-LLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNK 96
D+ D + + K K+E+ + + + + + T + +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEI--DHIIMSK----------DAVSGTLRLFWTLLSKQEEM 78
Query: 97 TYVY-GDLYRYDVEKQEWKV--ISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFH 153
+ ++ R + + + + I + P + ++ LY F N R
Sbjct: 79 VQKFVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 154 HYKDF--WMLDLKTNQWEQLN-LKGCPSPRSGH----RMVLYKHKIIV---FGGFYDTLR 203
Y +L+L+ + ++ + G G V +K+ F F+ L+
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGS-----GKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 204 EVRYYNDLYVFDLDQFKWQEIKPRF---GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260
+ ++ Q +I P + + + + L
Sbjct: 191 NCNSPETV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---------K 239
Query: 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM-CVHKKRALL---FGGVV 316
K ++ ++ + + W F++ C + LL F V
Sbjct: 240 SKPYENCLLVLLNVQ--NAKAWN---------------AFNLSC----KILLTTRFKQVT 278
Query: 317 DMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHE-- 373
D FL+ + +H L K L K + +P E
Sbjct: 279 D-----------FLSAATTTHISLDHHSMTLT---PDEVKSLLLKYLDCRPQDLP-REVL 323
Query: 374 KLNPIEAEEFDANEKDENA--EYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKP 431
NP + +D A + ++ N D L+ + +S+ VL +P
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKH-----VNCDKLTTIIESSL----NVL------EP 368
Query: 432 YESKKK-SDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNL 490
E +K + S+ P + L + + +D + ++ L+ +L
Sbjct: 369 AEYRKMFDRL--SVFPPSAH----------IPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 491 SKLDEWKC 498
+++
Sbjct: 417 --VEKQPK 422
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 1e-04
Identities = 83/603 (13%), Positives = 162/603 (26%), Gaps = 206/603 (34%)
Query: 27 ARRETKKISPEDDIDA-------ILLSIQKEEAKK--------------KEVHVEDNVPA 65
++ E I D + LLS Q+E +K + E P+
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
+ I YN N+ + ++ R + K+ R
Sbjct: 107 -------------MMTRMYIEQRDRLYNDNQVFAKYNVSR---LQPYLKL---------R 141
Query: 126 SAHQAVSWKNYLYIFG----GEFT-------SPNQERFHHYKDFWM-----------LDL 163
A + + I G G+ S + +K FW+ L++
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 164 KTNQWEQLNLKGCPSPRSGHRMVL-----------------YKHKIIVFGGFYDTLREVR 206
Q++ + L Y++ ++V L V+
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-------LLNVQ 254
Query: 207 YYNDLYVFDL--------------DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDE---VF 249
F+L D DE +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH---HSMTL----TPDEVKSLL 307
Query: 250 LYGGYSKEVSTDKNQ--SEKGIIHSDLWSL-------DPRTWE-WSKV------KKIGM- 292
K + E + S+ TW+ W V I
Sbjct: 308 -----LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 293 -----PPGPRAGFSMC------VHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341
P R F H LL ++ ++ +M + +N+L+ + L
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILL--SLIWFDVIKSDVM-VVVNKLHKYSL--- 416
Query: 342 RWYPLELRKEKSTK---DKLKKSSEQKPNSSALHEKLNPIEA----EEFDANEK-----D 389
+E + ++ST + + N ALH + ++ + FD+++ D
Sbjct: 417 ----VEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYLD 470
Query: 390 -----------ENAEYYEEADE----------MESNI--DNLSECVPNSVIVDDGVLAAK 426
+N E+ E +E I D+ + S++ L
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL--- 527
Query: 427 SGGKPYES--KKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDD 484
K Y+ + L+ I+ +I ++ K T + +M + E ++
Sbjct: 528 ---KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM--AEDEAIFEE 582
Query: 485 LYS 487
+
Sbjct: 583 AHK 585
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 41.5 bits (96), Expect = 9e-04
Identities = 38/263 (14%), Positives = 72/263 (27%), Gaps = 31/263 (11%)
Query: 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR 125
R S + + + GG + G + Y + W + + P
Sbjct: 284 QVARGYQSSAT--MSDGRVFTIGGSWSGG---VFEKNGEVYSPSSKTWTSLPNAKVNPML 338
Query: 126 SAHQAVSWKNYLYIF------GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179
+A + +++ + + G F + + Y D+K+ Q N P
Sbjct: 339 TADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 398
Query: 180 RSGHRMVL--YKHKIIVFGG-----FYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232
G+ ++ K KI+ FGG D L +
Sbjct: 399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHII-TLGEPGTSPNTVFAS----NGL- 452
Query: 233 PSPRSGFQFFVYQD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291
R+ V D F+ GG + + + + P + K
Sbjct: 453 YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP-----VFTPEIYVPEQDTFYKQNPNS 507
Query: 292 MPPGPRAGFSMCVHKKRALLFGG 314
+ S+ + R GG
Sbjct: 508 IVRV-YHSISLLLPDGRVFNGGG 529
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 647 | |||
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.97 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.96 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.69 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.65 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.61 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.51 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.51 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.46 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.42 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.42 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.19 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.12 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 96.78 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.76 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 96.74 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.73 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.63 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 96.61 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 96.6 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 96.59 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 96.51 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 96.51 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.49 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.42 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.33 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.31 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 96.25 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.18 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.11 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.05 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 96.03 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 95.94 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 95.9 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 95.9 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 95.86 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 95.83 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 95.67 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 95.67 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 95.64 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 95.63 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 95.55 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 95.49 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 95.47 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 95.45 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 95.43 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 95.42 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.4 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 95.39 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 95.35 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.2 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 95.19 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.17 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 95.14 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 95.13 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 95.12 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 95.08 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 95.05 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.03 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 94.96 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 94.93 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 94.89 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 94.87 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 94.86 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 94.86 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 94.83 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 94.82 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 94.8 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 94.76 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 94.74 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 94.67 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 94.66 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 94.64 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 94.53 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 94.45 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 94.42 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 94.41 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 94.41 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 94.4 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 94.36 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 94.36 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 94.35 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 94.33 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 94.33 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 94.3 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 94.25 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 94.2 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 94.19 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 94.12 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 94.12 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 94.11 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.08 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.06 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 94.05 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 94.01 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 93.97 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 93.94 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 93.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 93.85 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 93.84 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 93.79 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 93.75 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 93.64 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 93.53 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 93.46 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 93.46 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 93.42 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 93.35 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 93.32 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 93.31 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 93.31 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 93.29 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 93.28 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 93.25 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 93.24 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 93.22 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 93.12 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 93.07 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 92.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 92.95 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 92.93 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 92.88 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 92.85 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 92.84 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 92.74 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 92.68 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 92.66 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 92.34 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 92.33 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 92.24 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 92.19 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 92.1 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 91.98 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 91.98 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 91.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 91.95 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 91.93 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 91.86 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 91.82 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 91.78 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 91.62 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 91.59 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 91.53 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 91.45 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 91.41 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 91.2 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 91.2 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 91.17 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 91.12 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 91.1 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 91.04 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 91.03 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 90.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 90.87 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 90.79 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 90.74 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 90.68 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 90.63 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 90.49 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 90.48 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 90.34 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 90.29 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 90.26 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 89.88 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 89.85 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 89.85 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 89.79 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 89.76 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 89.65 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 89.64 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 89.63 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 89.53 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 89.38 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 89.19 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 89.07 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 88.95 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 88.92 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 88.91 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 88.73 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 88.66 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 88.66 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 88.63 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 88.59 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 88.29 | |
| 1gen_A | 218 | Gelatinase A; hydrolase, hemopexin domain, metallo | 88.16 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 87.97 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 87.88 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 87.83 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 87.74 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 87.7 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 87.62 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 87.61 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 87.51 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 87.44 | |
| 3c7x_A | 196 | Matrix metalloproteinase-14; membrane protein inte | 86.77 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 86.76 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 86.63 | |
| 3ju4_A | 670 | Endo-N-acetylneuraminidase; endonf, polysia, high- | 86.61 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 86.11 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 85.93 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 85.65 | |
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 85.64 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 85.64 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 85.43 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 84.99 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 84.99 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 84.66 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 84.21 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 83.93 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 83.9 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 83.9 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 83.79 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 83.73 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 83.13 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 83.03 | |
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 82.9 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 82.87 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 82.51 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 82.39 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 82.25 | |
| 1hxn_A | 219 | Hemopexin, HPX; heme, binding protein; 1.80A {Oryc | 81.29 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 81.04 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 80.57 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 80.52 | |
| 3oyo_A | 225 | Hemopexin fold protein CP4; seeds, plant protein; | 80.29 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 80.13 |
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-44 Score=372.22 Aligned_cols=290 Identities=18% Similarity=0.260 Sum_probs=241.8
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeC
Q 006384 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGG 142 (647)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG 142 (647)
.+.|.+|..|+++.+ ++.||||||. ++ ..++++++||+.+++|..++. +|.+|.+|+++++++.||||||
T Consensus 9 ~~~~~~~~~~~~~~~---~~~i~v~GG~--~~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG 78 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKV---GRLIYTAGGY--FR---QSLSYLEAYNPSNGTWLRLAD--LQVPRSGLAGCVVGGLLYAVGG 78 (308)
T ss_dssp ------------CCC---CCCEEEECCB--SS---SBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECC
T ss_pred ccCCeeeCCccccCC---CCEEEEEeCc--CC---CCcceEEEEcCCCCeEeECCC--CCcccccceEEEECCEEEEECC
Confidence 456788999999988 8999999996 22 367899999999999999965 5789999999999999999999
Q ss_pred CcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceE
Q 006384 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (647)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (647)
....... ...++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||.... ..++++++||+.+++|+
T Consensus 79 ~~~~~~~--~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~~~~W~ 150 (308)
T 1zgk_A 79 RNNSPDG--NTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWH 150 (308)
T ss_dssp EEEETTE--EEECCCEEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEECCEETT----EECCCEEEEETTTTEEE
T ss_pred CcCCCCC--CeecceEEEECCCCCeEeECCC--CCcCccccEEEEECCEEEEEcCCCCC----cccccEEEECCCCCeEe
Confidence 7421111 2357899999999999999987 88999999999999999999998652 36899999999999999
Q ss_pred EeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEE
Q 006384 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (647)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~ 302 (647)
.++++ |.+|.+|++++++++|||+||.... ..++++++||+.+++|+.+..+ |.+|.+|++
T Consensus 151 ~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~ 211 (308)
T 1zgk_A 151 LVAPM-----LTRRIGVGVAVLNRLLYAVGGFDGT-----------NRLNSAECYYPERNEWRMITAM---NTIRSGAGV 211 (308)
T ss_dssp ECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEECCCC---SSCCBSCEE
T ss_pred ECCCC-----CccccceEEEEECCEEEEEeCCCCC-----------CcCceEEEEeCCCCeEeeCCCC---CCccccceE
Confidence 99877 8899999999999999999998765 3478999999999999999754 889999999
Q ss_pred EEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhh
Q 006384 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEE 382 (647)
Q Consensus 303 ~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (647)
++++++||||||... ...++++++||+.+++|+.+..
T Consensus 212 ~~~~~~iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~---------------------------------- 248 (308)
T 1zgk_A 212 CVLHNCIYAAGGYDG---------QDQLNSVERYDVETETWTFVAP---------------------------------- 248 (308)
T ss_dssp EEETTEEEEECCBCS---------SSBCCCEEEEETTTTEEEECCC----------------------------------
T ss_pred EEECCEEEEEeCCCC---------CCccceEEEEeCCCCcEEECCC----------------------------------
Confidence 999999999999864 2347999999999999998764
Q ss_pred cccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeee
Q 006384 383 FDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVG 462 (647)
Q Consensus 383 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~ 462 (647)
+|.+|..|++++.
T Consensus 249 -------------------------------------------------------------------~p~~r~~~~~~~~ 261 (308)
T 1zgk_A 249 -------------------------------------------------------------------MKHRRSALGITVH 261 (308)
T ss_dssp -------------------------------------------------------------------CSSCCBSCEEEEE
T ss_pred -------------------------------------------------------------------CCCCccceEEEEE
Confidence 6899999999999
Q ss_pred cCeEEEecceEeecCeEEeecceeccccCCccceEEeccCCc
Q 006384 463 KDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASE 504 (647)
Q Consensus 463 ~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~~d~w~~~~~~~~ 504 (647)
++.|||+||... ...++++|.||+.+ ++|+.+.+...
T Consensus 262 ~~~i~v~GG~~~----~~~~~~v~~yd~~~-~~W~~~~~~p~ 298 (308)
T 1zgk_A 262 QGRIYVLGGYDG----HTFLDSVECYDPDT-DTWSEVTRMTS 298 (308)
T ss_dssp TTEEEEECCBCS----SCBCCEEEEEETTT-TEEEEEEECSS
T ss_pred CCEEEEEcCcCC----CcccceEEEEcCCC-CEEeecCCCCC
Confidence 999999999743 23589999999999 99999866543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=359.90 Aligned_cols=272 Identities=17% Similarity=0.238 Sum_probs=237.5
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
.+.||||||.. . .+++++||+.+++|..+++ +|.+|.+|+++++++.||||||.. . ..++++++
T Consensus 11 ~~~l~~~GG~~--~-----~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~-~------~~~~~~~~ 74 (306)
T 3ii7_A 11 HDYRIALFGGS--Q-----PQSCRYFNPKDYSWTDIRC--PFEKRRDAACVFWDNVVYILGGSQ-L------FPIKRMDC 74 (306)
T ss_dssp CCEEEEEECCS--S-----TTSEEEEETTTTEEEECCC--CSCCCBSCEEEEETTEEEEECCBS-S------SBCCEEEE
T ss_pred cceEEEEeCCC--C-----CceEEEecCCCCCEecCCC--CCcccceeEEEEECCEEEEEeCCC-C------CCcceEEE
Confidence 47999999942 1 6899999999999999976 478999999999999999999986 1 25799999
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeee
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (647)
||+.+++|..++. +|.+|.+|++++++++||||||.... ...++++++||+.+++|+.++++ |.+|.+|+
T Consensus 75 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 144 (306)
T 3ii7_A 75 YNVVKDSWYSKLG--PPTPRDSLAACAAEGKIYTSGGSEVG---NSALYLFECYDTRTESWHTKPSM-----LTQRCSHG 144 (306)
T ss_dssp EETTTTEEEEEEC--CSSCCBSCEEEEETTEEEEECCBBTT---BSCCCCEEEEETTTTEEEEECCC-----SSCCBSCE
T ss_pred EeCCCCeEEECCC--CCccccceeEEEECCEEEEECCCCCC---CcEeeeEEEEeCCCCceEeCCCC-----cCCcceeE
Confidence 9999999999987 89999999999999999999998632 33689999999999999999877 88999999
Q ss_pred EEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceecccc
Q 006384 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (647)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~ 320 (647)
+++++++|||+||.... ...+..++++++||+.+++|+.+.++ |.+|.+|++++++++||||||...
T Consensus 145 ~~~~~~~iyv~GG~~~~-------~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~--- 211 (306)
T 3ii7_A 145 MVEANGLIYVCGGSLGN-------NVSGRVLNSCEVYDPATETWTELCPM---IEARKNHGLVFVKDKIFAVGGQNG--- 211 (306)
T ss_dssp EEEETTEEEEECCEESC-------TTTCEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCEET---
T ss_pred EEEECCEEEEECCCCCC-------CCcccccceEEEeCCCCCeEEECCCc---cchhhcceEEEECCEEEEEeCCCC---
Confidence 99999999999998755 11123588999999999999999754 889999999999999999999875
Q ss_pred CccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhh
Q 006384 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (647)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (647)
...++++++||+.+++|+.+..
T Consensus 212 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 233 (306)
T 3ii7_A 212 ------LGGLDNVEYYDIKLNEWKMVSP---------------------------------------------------- 233 (306)
T ss_dssp ------TEEBCCEEEEETTTTEEEECCC----------------------------------------------------
T ss_pred ------CCCCceEEEeeCCCCcEEECCC----------------------------------------------------
Confidence 2357899999999999998754
Q ss_pred cccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEE
Q 006384 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (647)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~ 480 (647)
+|.+|..|++++.++.|||+||....+
T Consensus 234 -------------------------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~~---- 260 (306)
T 3ii7_A 234 -------------------------------------------------MPWKGVTVKCAAVGSIVYVLAGFQGVG---- 260 (306)
T ss_dssp -------------------------------------------------CSCCBSCCEEEEETTEEEEEECBCSSS----
T ss_pred -------------------------------------------------CCCCccceeEEEECCEEEEEeCcCCCe----
Confidence 689999999999999999999985332
Q ss_pred eecceeccccCCccceEEeccCC
Q 006384 481 TLDDLYSLNLSKLDEWKCIIPAS 503 (647)
Q Consensus 481 tl~D~~~ldl~~~d~w~~~~~~~ 503 (647)
.++++|.||+.+ ++|+.+.+..
T Consensus 261 ~~~~~~~yd~~~-~~W~~~~~~~ 282 (306)
T 3ii7_A 261 RLGHILEYNTET-DKWVANSKVR 282 (306)
T ss_dssp BCCEEEEEETTT-TEEEEEEEEE
T ss_pred eeeeEEEEcCCC-CeEEeCCCcc
Confidence 589999999999 9999986554
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=357.75 Aligned_cols=269 Identities=18% Similarity=0.295 Sum_probs=236.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
++.||||||.. . ..++++++||+.+++|..++. +|.+|.+|++++++++||||||.... ..++++|+
T Consensus 15 ~~~i~v~GG~~--~---~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~ 81 (302)
T 2xn4_A 15 PKLMVVVGGQA--P---KAIRSVECYDFKEERWHQVAE--LPSRRCRAGMVYMAGLVFAVGGFNGS------LRVRTVDS 81 (302)
T ss_dssp CEEEEEECCBS--S---SBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEESCBCSS------SBCCCEEE
T ss_pred CCEEEEECCCC--C---CCCCcEEEEcCcCCcEeEccc--CCcccccceEEEECCEEEEEeCcCCC------ccccceEE
Confidence 68999999952 2 256899999999999999975 57899999999999999999997643 24689999
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeee
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (647)
||+.+++|+.++. +|.+|.+|++++++++||||||.... ..++++++||+.+++|+.++++ |.+|.+|+
T Consensus 82 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 150 (302)
T 2xn4_A 82 YDPVKDQWTSVAN--MRDRRSTLGAAVLNGLLYAVGGFDGS----TGLSSVEAYNIKSNEWFHVAPM-----NTRRSSVG 150 (302)
T ss_dssp EETTTTEEEEECC--CSSCCBSCEEEEETTEEEEEEEECSS----CEEEEEEEEETTTTEEEEECCC-----SSCCBSCE
T ss_pred ECCCCCceeeCCC--CCccccceEEEEECCEEEEEcCCCCC----ccCceEEEEeCCCCeEeecCCC-----CCcccCce
Confidence 9999999999987 89999999999999999999998643 3589999999999999999887 88999999
Q ss_pred EEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceecccc
Q 006384 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (647)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~ 320 (647)
+++++++|||+||.... ....++++++||+.+++|+.+..+ |.+|.+|++++++++||||||...
T Consensus 151 ~~~~~~~iyv~GG~~~~---------~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~--- 215 (302)
T 2xn4_A 151 VGVVGGLLYAVGGYDVA---------SRQCLSTVECYNATTNEWTYIAEM---STRRSGAGVGVLNNLLYAVGGHDG--- 215 (302)
T ss_dssp EEEETTEEEEECCEETT---------TTEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBSS---
T ss_pred EEEECCEEEEEeCCCCC---------CCccccEEEEEeCCCCcEEECCCC---ccccccccEEEECCEEEEECCCCC---
Confidence 99999999999998654 124578999999999999999654 889999999999999999999764
Q ss_pred CccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhh
Q 006384 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (647)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (647)
....+++++||+.+++|+.+..
T Consensus 216 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 237 (302)
T 2xn4_A 216 ------PLVRKSVEVYDPTTNAWRQVAD---------------------------------------------------- 237 (302)
T ss_dssp ------SSBCCCEEEEETTTTEEEEECC----------------------------------------------------
T ss_pred ------CcccceEEEEeCCCCCEeeCCC----------------------------------------------------
Confidence 3457899999999999998765
Q ss_pred cccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEE
Q 006384 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (647)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~ 480 (647)
+|.+|.+|++++.++.|||+||.... .
T Consensus 238 -------------------------------------------------~~~~r~~~~~~~~~~~i~v~GG~~~~----~ 264 (302)
T 2xn4_A 238 -------------------------------------------------MNMCRRNAGVCAVNGLLYVVGGDDGS----C 264 (302)
T ss_dssp -------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCSS----S
T ss_pred -------------------------------------------------CCCccccCeEEEECCEEEEECCcCCC----c
Confidence 68899999999999999999997532 2
Q ss_pred eecceeccccCCccceEEec
Q 006384 481 TLDDLYSLNLSKLDEWKCII 500 (647)
Q Consensus 481 tl~D~~~ldl~~~d~w~~~~ 500 (647)
.++++|.||+.+ ++|+.+.
T Consensus 265 ~~~~v~~yd~~~-~~W~~~~ 283 (302)
T 2xn4_A 265 NLASVEYYNPTT-DKWTVVS 283 (302)
T ss_dssp BCCCEEEEETTT-TEEEECS
T ss_pred ccccEEEEcCCC-CeEEECC
Confidence 489999999999 9999986
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=368.22 Aligned_cols=305 Identities=19% Similarity=0.252 Sum_probs=240.1
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECC--CCeEEEecCCCCC-CCcceeEEEEECCEE
Q 006384 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSP-PPRSAHQAVSWKNYL 137 (647)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~--~~~W~~l~s~~~P-~~R~~ha~v~~~~~i 137 (647)
..+++|.+|.+|+++++ +++||||||.. .+++|+||+. +++|+.+++ +| .+|.+|++++++++|
T Consensus 2 ~l~~lP~~r~~~~~~~~---~~~iyv~GG~~--------~~~~~~~d~~~~~~~W~~~~~--~p~~~R~~~~~~~~~~~l 68 (357)
T 2uvk_A 2 VLPETPVPFKSGTGAID---NDTVYIGLGSA--------GTAWYKLDTQAKDKKWTALAA--FPGGPRDQATSAFIDGNL 68 (357)
T ss_dssp CSCCCSSCCCSCEEEEE---TTEEEEECGGG--------TTCEEEEETTSSSCCEEECCC--CTTCCCBSCEEEEETTEE
T ss_pred CCCCCCccccceEEEEE---CCEEEEEeCcC--------CCeEEEEccccCCCCeeECCC--CCCCcCccceEEEECCEE
Confidence 45789999999999998 89999999952 2489999998 499999977 46 789999999999999
Q ss_pred EEEeCCcC-CCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCC-------------
Q 006384 138 YIFGGEFT-SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR------------- 203 (647)
Q Consensus 138 yv~GG~~~-~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~------------- 203 (647)
|||||... .... ...++++|+||+.+++|+.+++.+ |.+|.+|++++++++||||||......
T Consensus 69 yv~GG~~~~~~~~--~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 145 (357)
T 2uvk_A 69 YVFGGIGKNSEGL--TQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKD 145 (357)
T ss_dssp EEECCEEECTTSC--EEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTC
T ss_pred EEEcCCCCCCCcc--ceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCc
Confidence 99999822 1111 346899999999999999998833 599999999999999999999753210
Q ss_pred -----------------ceeeeCcEEEEEcCCCceEEeccCCCCCCCCC-ceeeeEEEeCCEEEEEecccCCCCCcccCC
Q 006384 204 -----------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP-RSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (647)
Q Consensus 204 -----------------~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~-R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (647)
...+++++++||+.+++|+.+.++ |.+ |.+|++++++++||||||....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-----p~~~~~~~~~~~~~~~iyv~GG~~~~-------- 212 (357)
T 2uvk_A 146 STAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES-----PWYGTAGAAVVNKGDKTWLINGEAKP-------- 212 (357)
T ss_dssp HHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC-----SSCCCBSCEEEEETTEEEEECCEEET--------
T ss_pred ccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCC-----CCCCcccccEEEECCEEEEEeeecCC--------
Confidence 002468999999999999999877 655 4559999999999999998754
Q ss_pred CCCceeeeEEEEeC--CCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcc--------ccccccCCcEEE
Q 006384 266 EKGIIHSDLWSLDP--RTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGD--------VIMSLFLNELYG 335 (647)
Q Consensus 266 ~~~~~~~dv~~yd~--~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~--------~~~~~~~ndl~~ 335 (647)
+...+++++||+ .+++|+.+..+ ..|.+|.+|++++++++||||||......... ......++++++
T Consensus 213 --~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 289 (357)
T 2uvk_A 213 --GLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDI 289 (357)
T ss_dssp --TEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEE
T ss_pred --CcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEE
Confidence 356788999986 99999999775 23455778999999999999999864221000 000123478999
Q ss_pred EECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcc
Q 006384 336 FQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNS 415 (647)
Q Consensus 336 yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (647)
||+.+++|+.+..
T Consensus 290 yd~~~~~W~~~~~------------------------------------------------------------------- 302 (357)
T 2uvk_A 290 HLWHNGKWDKSGE------------------------------------------------------------------- 302 (357)
T ss_dssp EECC---CEEEEE-------------------------------------------------------------------
T ss_pred EecCCCceeeCCC-------------------------------------------------------------------
Confidence 9999999999865
Q ss_pred eeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCeEEeecceeccccCCccc
Q 006384 416 VIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDE 495 (647)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~~d~ 495 (647)
+|.+|.+|++++.+++||||||....+ ..++|+|.|+++. ++
T Consensus 303 ----------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~~---~~~~~v~~l~~~~-~~ 344 (357)
T 2uvk_A 303 ----------------------------------LSQGRAYGVSLPWNNSLLIIGGETAGG---KAVTDSVLITVKD-NK 344 (357)
T ss_dssp ----------------------------------CSSCCBSSEEEEETTEEEEEEEECGGG---CEEEEEEEEEC-C-CS
T ss_pred ----------------------------------CCCCcccceeEEeCCEEEEEeeeCCCC---CEeeeEEEEEEcC-cE
Confidence 699999999999999999999987655 3489999999998 89
Q ss_pred eEEeccC
Q 006384 496 WKCIIPA 502 (647)
Q Consensus 496 w~~~~~~ 502 (647)
|.++.+.
T Consensus 345 ~~~~~~~ 351 (357)
T 2uvk_A 345 VTVQNLE 351 (357)
T ss_dssp CEEEC--
T ss_pred eEeeecc
Confidence 9887764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=354.03 Aligned_cols=272 Identities=19% Similarity=0.324 Sum_probs=238.5
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
++.||||||.... ...++++++||+.+++|..++. +|.+|.+|+++.+++.||||||.... ..++++|+
T Consensus 14 ~~~i~~~GG~~~~---~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~l~v~GG~~~~------~~~~~~~~ 82 (301)
T 2vpj_A 14 NEVLLVVGGFGSQ---QSPIDVVEKYDPKTQEWSFLPS--ITRKRRYVASVSLHDRIYVIGGYDGR------SRLSSVEC 82 (301)
T ss_dssp CEEEEEECCEETT---TEECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSS------CBCCCEEE
T ss_pred CCEEEEEeCccCC---CcceeEEEEEcCCCCeEEeCCC--CChhhccccEEEECCEEEEEcCCCCC------ccCceEEE
Confidence 6899999994222 2468899999999999999976 56899999999999999999997632 25789999
Q ss_pred EECCCCc---EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCce
Q 006384 161 LDLKTNQ---WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (647)
Q Consensus 161 yD~~t~~---W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (647)
||+.+++ |+.++. +|.+|.+|++++++++||||||.... ..++++++||+.+++|+.++++ |.+|.
T Consensus 83 ~d~~~~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~----~~~~~~~~~d~~~~~W~~~~~~-----p~~r~ 151 (301)
T 2vpj_A 83 LDYTADEDGVWYSVAP--MNVRRGLAGATTLGDMIYVSGGFDGS----RRHTSMERYDPNIDQWSMLGDM-----QTARE 151 (301)
T ss_dssp EETTCCTTCCCEEECC--CSSCCBSCEEEEETTEEEEECCBCSS----CBCCEEEEEETTTTEEEEEEEC-----SSCCB
T ss_pred EECCCCCCCeeEECCC--CCCCccceeEEEECCEEEEEcccCCC----cccceEEEEcCCCCeEEECCCC-----CCCcc
Confidence 9999999 999977 78999999999999999999998643 2478999999999999999887 88999
Q ss_pred eeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceec
Q 006384 238 GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVD 317 (647)
Q Consensus 238 ~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~ 317 (647)
+|++++++++|||+||+... ..++++++||+.+++|+.+..+ |.+|.+|++++++++||||||...
T Consensus 152 ~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 152 GAGLVVASGVIYCLGGYDGL-----------NILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVALLNDHIYVVGGFDG 217 (301)
T ss_dssp SCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCS
T ss_pred cceEEEECCEEEEECCCCCC-----------cccceEEEEeCCCCcEEeCCCC---CcccccceEEEECCEEEEEeCCCC
Confidence 99999999999999998754 4678999999999999999654 889999999999999999999865
Q ss_pred cccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhh
Q 006384 318 MEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEE 397 (647)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 397 (647)
....+++++||+.+++|..+..
T Consensus 218 ---------~~~~~~v~~yd~~~~~W~~~~~------------------------------------------------- 239 (301)
T 2vpj_A 218 ---------TAHLSSVEAYNIRTDSWTTVTS------------------------------------------------- 239 (301)
T ss_dssp ---------SSBCCCEEEEETTTTEEEEECC-------------------------------------------------
T ss_pred ---------CcccceEEEEeCCCCcEEECCC-------------------------------------------------
Confidence 2347899999999999998754
Q ss_pred hhhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecC
Q 006384 398 ADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEIND 477 (647)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~ 477 (647)
+|.+|..|++++.++.|||+||....
T Consensus 240 ----------------------------------------------------~p~~r~~~~~~~~~~~i~v~GG~~~~-- 265 (301)
T 2vpj_A 240 ----------------------------------------------------MTTPRCYVGATVLRGRLYAIAGYDGN-- 265 (301)
T ss_dssp ----------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCSS--
T ss_pred ----------------------------------------------------CCCcccceeEEEECCEEEEEcCcCCC--
Confidence 68999999999999999999997532
Q ss_pred eEEeecceeccccCCccceEEeccCC
Q 006384 478 QEITLDDLYSLNLSKLDEWKCIIPAS 503 (647)
Q Consensus 478 ~e~tl~D~~~ldl~~~d~w~~~~~~~ 503 (647)
..++++|.||+.+ ++|+.+.+..
T Consensus 266 --~~~~~v~~yd~~~-~~W~~~~~~~ 288 (301)
T 2vpj_A 266 --SLLSSIECYDPII-DSWEVVTSMG 288 (301)
T ss_dssp --SBEEEEEEEETTT-TEEEEEEEEE
T ss_pred --cccccEEEEcCCC-CeEEEcCCCC
Confidence 2579999999999 9999986544
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=359.97 Aligned_cols=278 Identities=22% Similarity=0.392 Sum_probs=235.2
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
.+.|||||| +++++||+.+++|.. ++++.|.+|.+|+++++++.|||+||.............+++|+
T Consensus 4 ~~~l~~~GG-----------~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 71 (315)
T 4asc_A 4 QDLIFMISE-----------EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQ 71 (315)
T ss_dssp EEEEEEEET-----------TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEE
T ss_pred ceEEEEEcC-----------CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEE
Confidence 468999999 489999999999997 54545779999999999999999999642211111234577999
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeee
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (647)
||+.+++|+.+++ +|.+|.+|++++++++||||||..... ....++++++||+.+++|+.++++ |.+|.+|+
T Consensus 72 ~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~d~~~~~W~~~~~~-----p~~r~~~~ 143 (315)
T 4asc_A 72 FDHLDSEWLGMPP--LPSPRCLFGLGEALNSIYVVGGREIKD-GERCLDSVMCYDRLSFKWGESDPL-----PYVVYGHT 143 (315)
T ss_dssp EETTTTEEEECCC--BSSCEESCEEEEETTEEEEECCEESST-TCCBCCCEEEEETTTTEEEECCCC-----SSCCBSCE
T ss_pred ecCCCCeEEECCC--CCcchhceeEEEECCEEEEEeCCcCCC-CCcccceEEEECCCCCcEeECCCC-----CCccccee
Confidence 9999999999987 899999999999999999999975311 134689999999999999999877 88999999
Q ss_pred EEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceecccc
Q 006384 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (647)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~ 320 (647)
+++++++|||+||.... ...++++++||+.+++|+.+.++ |.+|.+|++++++++||||||...
T Consensus 144 ~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~--- 207 (315)
T 4asc_A 144 VLSHMDLVYVIGGKGSD----------RKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATVHDGRIIVAAGVTD--- 207 (315)
T ss_dssp EEEETTEEEEECCBCTT----------SCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEEEEECS---
T ss_pred EEEECCEEEEEeCCCCC----------CcccceEEEEeCCCCeEEECCCC---CCchhceEEEEECCEEEEEeccCC---
Confidence 99999999999998433 35688999999999999999764 889999999999999999999865
Q ss_pred CccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhh
Q 006384 321 KGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (647)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (647)
...++++++||+.+++|+.+..
T Consensus 208 ------~~~~~~~~~yd~~~~~W~~~~~---------------------------------------------------- 229 (315)
T 4asc_A 208 ------TGLTSSAEVYSITDNKWAPFEA---------------------------------------------------- 229 (315)
T ss_dssp ------SSEEEEEEEEETTTTEEEEECC----------------------------------------------------
T ss_pred ------CCccceEEEEECCCCeEEECCC----------------------------------------------------
Confidence 2357899999999999998865
Q ss_pred cccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEee----c
Q 006384 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEI----N 476 (647)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~----g 476 (647)
+|.+|..|++++.++.|||+||.... +
T Consensus 230 -------------------------------------------------~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~ 260 (315)
T 4asc_A 230 -------------------------------------------------FPQERSSLSLVSLVGTLYAIGGFATLETESG 260 (315)
T ss_dssp -------------------------------------------------CSSCCBSCEEEEETTEEEEEEEEEEEECTTS
T ss_pred -------------------------------------------------CCCcccceeEEEECCEEEEECCccccCcCCc
Confidence 69999999999999999999998653 1
Q ss_pred Ce-EEeecceeccccCCccceEEeccC
Q 006384 477 DQ-EITLDDLYSLNLSKLDEWKCIIPA 502 (647)
Q Consensus 477 ~~-e~tl~D~~~ldl~~~d~w~~~~~~ 502 (647)
.. ...++|+|.||+.+ ++|+.+.+.
T Consensus 261 ~~~~~~~~~v~~yd~~~-~~W~~~~~~ 286 (315)
T 4asc_A 261 ELVPTELNDIWRYNEEE-KKWEGVLRE 286 (315)
T ss_dssp CEEEEEEEEEEEEETTT-TEEEEEESC
T ss_pred cccccccCcEEEecCCC-ChhhhhccC
Confidence 11 14589999999999 999999544
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=356.88 Aligned_cols=285 Identities=21% Similarity=0.380 Sum_probs=234.8
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcC
Q 006384 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145 (647)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~ 145 (647)
..||.++.. .+.||+|||. .+++||+.+++|... ++..|.+|.+|+++++++.||||||...
T Consensus 6 ~~~r~~~~~------~~~i~~~GG~-----------~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~ 67 (318)
T 2woz_A 6 DIPRHGMFV------KDLILLVNDT-----------AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYV 67 (318)
T ss_dssp SSCCCCCSE------EEEEEEECSS-----------EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC
T ss_pred cccccccee------cchhhhcccc-----------ceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCccc
Confidence 345655433 3689999993 479999999999984 3445689999999999999999999642
Q ss_pred CCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEec
Q 006384 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (647)
..........+++|+||+.+++|..+++ +|.+|.+|++++++++||||||.... ....++++++||+.+++|+.++
T Consensus 68 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~~yd~~~~~W~~~~ 143 (318)
T 2woz_A 68 DEENKDQPLQSYFFQLDNVSSEWVGLPP--LPSARCLFGLGEVDDKIYVVAGKDLQ--TEASLDSVLCYDPVAAKWSEVK 143 (318)
T ss_dssp -------CCCBEEEEEETTTTEEEECSC--BSSCBCSCEEEEETTEEEEEEEEBTT--TCCEEEEEEEEETTTTEEEEEC
T ss_pred CccccCCCccccEEEEeCCCCcEEECCC--CCccccccceEEECCEEEEEcCccCC--CCcccceEEEEeCCCCCEeECC
Confidence 2111001234569999999999999987 89999999999999999999998632 1346899999999999999998
Q ss_pred cCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE
Q 006384 226 PRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
++ |.+|.+|++++++++|||+||.... ...++++++||+.+++|+.+..+ |.+|.+|+++++
T Consensus 144 ~~-----p~~r~~~~~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~ 205 (318)
T 2woz_A 144 NL-----PIKVYGHNVISHNGMIYCLGGKTDD----------KKCTNRVFIYNPKKGDWKDLAPM---KTPRSMFGVAIH 205 (318)
T ss_dssp CC-----SSCEESCEEEEETTEEEEECCEESS----------SCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEE
T ss_pred CC-----CCcccccEEEEECCEEEEEcCCCCC----------CCccceEEEEcCCCCEEEECCCC---CCCcccceEEEE
Confidence 77 8899999999999999999998644 35678999999999999999754 889999999999
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhccc
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDA 385 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (647)
+++||||||... ....+++++||+.+++|+.+..
T Consensus 206 ~~~iyv~GG~~~---------~~~~~~~~~yd~~~~~W~~~~~------------------------------------- 239 (318)
T 2woz_A 206 KGKIVIAGGVTE---------DGLSASVEAFDLKTNKWEVMTE------------------------------------- 239 (318)
T ss_dssp TTEEEEEEEEET---------TEEEEEEEEEETTTCCEEECCC-------------------------------------
T ss_pred CCEEEEEcCcCC---------CCccceEEEEECCCCeEEECCC-------------------------------------
Confidence 999999999875 2357899999999999998754
Q ss_pred CcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCe
Q 006384 386 NEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDT 465 (647)
Q Consensus 386 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~ 465 (647)
+|.+|..|++++.++.
T Consensus 240 ----------------------------------------------------------------~p~~r~~~~~~~~~~~ 255 (318)
T 2woz_A 240 ----------------------------------------------------------------FPQERSSISLVSLAGS 255 (318)
T ss_dssp ----------------------------------------------------------------CSSCCBSCEEEEETTE
T ss_pred ----------------------------------------------------------------CCCcccceEEEEECCE
Confidence 6899999999999999
Q ss_pred EEEecceEeecC--e---EEeecceeccccCCccceEEecc
Q 006384 466 LYVYGGMMEIND--Q---EITLDDLYSLNLSKLDEWKCIIP 501 (647)
Q Consensus 466 Lyi~GG~~e~g~--~---e~tl~D~~~ldl~~~d~w~~~~~ 501 (647)
|||+||...... . ...++|+|.||+.+ ++|+.+.+
T Consensus 256 i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~-~~W~~~~~ 295 (318)
T 2woz_A 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK-KEWAGMLK 295 (318)
T ss_dssp EEEECCBCCBC----CCBCCBCCCEEEEETTT-TEEEEEES
T ss_pred EEEECCeeccCCCCceeccceeeeEEEEeCCC-CEehhhcc
Confidence 999999854211 1 12489999999999 99999944
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=354.04 Aligned_cols=252 Identities=20% Similarity=0.373 Sum_probs=213.0
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecC--CCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEE
Q 006384 63 VPAPSPRSNCSLNINPLKETELILYGGEFYN--GNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (647)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~--g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~ 140 (647)
.+.|.+|.+|+++++ +++||||||...+ +......+++++||+.+++|+.+++ +|.+|.+|++++++++|||+
T Consensus 30 ~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~lyv~ 104 (315)
T 4asc_A 30 LSSQVPKNHVSLVTK---ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP--LPSPRCLFGLGEALNSIYVV 104 (315)
T ss_dssp CCCCSCSSEEEEECT---TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC--BSSCEESCEEEEETTEEEEE
T ss_pred CCCCCCccceEEEEE---CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC--CCcchhceeEEEECCEEEEE
Confidence 345789999999998 8999999997432 2233456789999999999999976 57899999999999999999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
||...... ...++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||.... ...++++++||+.+++
T Consensus 105 GG~~~~~~---~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 105 GGREIKDG---ERCLDSVMCYDRLSFKWGESDP--LPYVVYGHTVLSHMDLVYVIGGKGSD---RKCLNKMCVYDPKKFE 176 (315)
T ss_dssp CCEESSTT---CCBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCTT---SCBCCCEEEEETTTTE
T ss_pred eCCcCCCC---CcccceEEEECCCCCcEeECCC--CCCcccceeEEEECCEEEEEeCCCCC---CcccceEEEEeCCCCe
Confidence 99753211 1367999999999999999987 89999999999999999999998432 2368999999999999
Q ss_pred eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceee
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~ 300 (647)
|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.. +|.+|.+|
T Consensus 177 W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~ 237 (315)
T 4asc_A 177 WKELAPM-----QTARSLFGATVHDGRIIVAAGVTDT-----------GLTSSAEVYSITDNKWAPFEA---FPQERSSL 237 (315)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEEEEECSS-----------SEEEEEEEEETTTTEEEEECC---CSSCCBSC
T ss_pred EEECCCC-----CCchhceEEEEECCEEEEEeccCCC-----------CccceEEEEECCCCeEEECCC---CCCcccce
Confidence 9999877 8899999999999999999998765 467899999999999999975 48899999
Q ss_pred EEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEe
Q 006384 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (647)
Q Consensus 301 s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (647)
++++++++||||||.+.............++++|+||+.+++|+.+
T Consensus 238 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 238 SLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred eEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 9999999999999986532111112235678999999999999977
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-41 Score=350.73 Aligned_cols=263 Identities=16% Similarity=0.358 Sum_probs=214.8
Q ss_pred hhhhhcceEEEEeccCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCC--cceeeCcEEEEECCCCeEEEecCCCCCCC
Q 006384 47 IQKEEAKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGN--KTYVYGDLYRYDVEKQEWKVISSPNSPPP 124 (647)
Q Consensus 47 ~~~~e~~~~~~~~~~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~--~~~~~ndl~~yd~~~~~W~~l~s~~~P~~ 124 (647)
|.....+|... ..+.|.+|.+|+++++ ++.||||||...+.. .....+++++||+.+++|+.+++ +|.+
T Consensus 29 yd~~~~~W~~~----~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~ 99 (318)
T 2woz_A 29 YDPMENECYLT----ALAEQIPRNHSSIVTQ---QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP--LPSA 99 (318)
T ss_dssp EETTTTEEEEE----EECTTSCSSEEEEECS---SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC--BSSC
T ss_pred ECCCCCceecc----cCCccCCccceEEEEE---CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC--CCcc
Confidence 44444455431 2345688999999988 899999999643221 12344569999999999999976 5789
Q ss_pred cceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCc
Q 006384 125 RSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204 (647)
Q Consensus 125 R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~ 204 (647)
|.+|++++++++|||+||...... ..++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||....
T Consensus 100 r~~~~~~~~~~~iyv~GG~~~~~~----~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~--- 170 (318)
T 2woz_A 100 RCLFGLGEVDDKIYVVAGKDLQTE----ASLDSVLCYDPVAAKWSEVKN--LPIKVYGHNVISHNGMIYCLGGKTDD--- 170 (318)
T ss_dssp BCSCEEEEETTEEEEEEEEBTTTC----CEEEEEEEEETTTTEEEEECC--CSSCEESCEEEEETTEEEEECCEESS---
T ss_pred ccccceEEECCEEEEEcCccCCCC----cccceEEEEeCCCCCEeECCC--CCCcccccEEEEECCEEEEEcCCCCC---
Confidence 999999999999999999864222 257899999999999999987 89999999999999999999998643
Q ss_pred eeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeE
Q 006384 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (647)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (647)
...++++++||+.+++|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|
T Consensus 171 ~~~~~~~~~yd~~~~~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 171 KKCTNRVFIYNPKKGDWKDLAPM-----KTPRSMFGVAIHKGKIVIAGGVTED-----------GLSASVEAFDLKTNKW 234 (318)
T ss_dssp SCBCCCEEEEETTTTEEEEECCC-----SSCCBSCEEEEETTEEEEEEEEETT-----------EEEEEEEEEETTTCCE
T ss_pred CCccceEEEEcCCCCEEEECCCC-----CCCcccceEEEECCEEEEEcCcCCC-----------CccceEEEEECCCCeE
Confidence 23689999999999999999877 8899999999999999999998765 4678999999999999
Q ss_pred EEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEe
Q 006384 285 SKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (647)
Q Consensus 285 ~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (647)
+.+.. +|.+|.+|++++++++||||||..........+.....+++|+||+.+++|+.+
T Consensus 235 ~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 235 EVMTE---FPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EECCC---CSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EECCC---CCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 99965 488999999999999999999986533222222235679999999999999987
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=342.58 Aligned_cols=243 Identities=19% Similarity=0.254 Sum_probs=215.2
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEE
Q 006384 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (647)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~ 140 (647)
...++|.+|.+|+++++ +++||||||.. ...++++++||+.+++|+.+++ +|.+|.+|++++++++||||
T Consensus 38 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~-----~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~ 107 (306)
T 3ii7_A 38 DIRCPFEKRRDAACVFW---DNVVYILGGSQ-----LFPIKRMDCYNVVKDSWYSKLG--PPTPRDSLAACAAEGKIYTS 107 (306)
T ss_dssp ECCCCSCCCBSCEEEEE---TTEEEEECCBS-----SSBCCEEEEEETTTTEEEEEEC--CSSCCBSCEEEEETTEEEEE
T ss_pred cCCCCCcccceeEEEEE---CCEEEEEeCCC-----CCCcceEEEEeCCCCeEEECCC--CCccccceeEEEECCEEEEE
Confidence 44678999999999999 89999999963 3367899999999999999977 47899999999999999999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
||.... ...++++++||+.+++|+.++. +|.+|.+|++++++++||||||.........+++++++||+.+++
T Consensus 108 GG~~~~-----~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 108 GGSEVG-----NSALYLFECYDTRTESWHTKPS--MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp CCBBTT-----BSCCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCCCCC-----CcEeeeEEEEeCCCCceEeCCC--CcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 998632 1357999999999999999977 899999999999999999999987654434468999999999999
Q ss_pred eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceee
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~ 300 (647)
|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.. +|.+|.+|
T Consensus 181 W~~~~~~-----p~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~ 241 (306)
T 3ii7_A 181 WTELCPM-----IEARKNHGLVFVKDKIFAVGGQNGL-----------GGLDNVEYYDIKLNEWKMVSP---MPWKGVTV 241 (306)
T ss_dssp EEEECCC-----SSCCBSCEEEEETTEEEEECCEETT-----------EEBCCEEEEETTTTEEEECCC---CSCCBSCC
T ss_pred EEECCCc-----cchhhcceEEEECCEEEEEeCCCCC-----------CCCceEEEeeCCCCcEEECCC---CCCCccce
Confidence 9999877 8899999999999999999998764 567899999999999999965 48899999
Q ss_pred EEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 301 s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
++++++++||||||... ...++++++||+.+++|+.+..
T Consensus 242 ~~~~~~~~i~v~GG~~~---------~~~~~~~~~yd~~~~~W~~~~~ 280 (306)
T 3ii7_A 242 KCAAVGSIVYVLAGFQG---------VGRLGHILEYNTETDKWVANSK 280 (306)
T ss_dssp EEEEETTEEEEEECBCS---------SSBCCEEEEEETTTTEEEEEEE
T ss_pred eEEEECCEEEEEeCcCC---------CeeeeeEEEEcCCCCeEEeCCC
Confidence 99999999999999864 2357899999999999999876
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=341.85 Aligned_cols=239 Identities=19% Similarity=0.283 Sum_probs=210.5
Q ss_pred CCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEe
Q 006384 62 NVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFG 141 (647)
Q Consensus 62 ~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~G 141 (647)
..++|.+|.+|+++++ +++||||||.. +. ..++++++||+.+++|+.+++ +|.+|..|++++++++|||+|
T Consensus 45 ~~~~p~~r~~~~~~~~---~~~lyv~GG~~--~~--~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~G 115 (302)
T 2xn4_A 45 VAELPSRRCRAGMVYM---AGLVFAVGGFN--GS--LRVRTVDSYDPVKDQWTSVAN--MRDRRSTLGAAVLNGLLYAVG 115 (302)
T ss_dssp ECCCSSCCBSCEEEEE---TTEEEEESCBC--SS--SBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEEE
T ss_pred cccCCcccccceEEEE---CCEEEEEeCcC--CC--ccccceEEECCCCCceeeCCC--CCccccceEEEEECCEEEEEc
Confidence 3578999999999999 89999999963 22 357899999999999999986 568999999999999999999
Q ss_pred CCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 142 GEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
|.... ..++++|+||+.+++|+.+++ +|.+|.+|++++++++||||||..... ...++++++||+.+++|
T Consensus 116 G~~~~------~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 116 GFDGS------TGLSSVEAYNIKSNEWFHVAP--MNTRRSSVGVGVVGGLLYAVGGYDVAS--RQCLSTVECYNATTNEW 185 (302)
T ss_dssp EECSS------CEEEEEEEEETTTTEEEEECC--CSSCCBSCEEEEETTEEEEECCEETTT--TEECCCEEEEETTTTEE
T ss_pred CCCCC------ccCceEEEEeCCCCeEeecCC--CCCcccCceEEEECCEEEEEeCCCCCC--CccccEEEEEeCCCCcE
Confidence 97543 256899999999999999987 789999999999999999999986542 23689999999999999
Q ss_pred EEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeE
Q 006384 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (647)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s 301 (647)
+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+..+ |.+|.+|+
T Consensus 186 ~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~ 246 (302)
T 2xn4_A 186 TYIAEM-----STRRSGAGVGVLNNLLYAVGGHDGP-----------LVRKSVEVYDPTTNAWRQVADM---NMCRRNAG 246 (302)
T ss_dssp EEECCC-----SSCCBSCEEEEETTEEEEECCBSSS-----------SBCCCEEEEETTTTEEEEECCC---SSCCBSCE
T ss_pred EECCCC-----ccccccccEEEECCEEEEECCCCCC-----------cccceEEEEeCCCCCEeeCCCC---CCccccCe
Confidence 999877 8899999999999999999998654 4578899999999999999754 78899999
Q ss_pred EEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 302 ~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
+++++++||||||.+. ...++++++||+.+++|+.++
T Consensus 247 ~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 247 VCAVNGLLYVVGGDDG---------SCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp EEEETTEEEEECCBCS---------SSBCCCEEEEETTTTEEEECS
T ss_pred EEEECCEEEEECCcCC---------CcccccEEEEcCCCCeEEECC
Confidence 9999999999999764 235789999999999999876
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-40 Score=341.86 Aligned_cols=243 Identities=19% Similarity=0.289 Sum_probs=213.9
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEE
Q 006384 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (647)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~ 140 (647)
...++|.+|.+|+++++ +++||||||..........++++++||+.+++|+.+++ +|.+|..|++++++++|||+
T Consensus 53 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~ 127 (308)
T 1zgk_A 53 RLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAV 127 (308)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEE
T ss_pred ECCCCCcccccceEEEE---CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCC--CCcCccccEEEEECCEEEEE
Confidence 44678999999999999 89999999964222334578999999999999999976 46899999999999999999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
||.... ..++++++||+.+++|+.+++ +|.+|.+|++++++++||||||..... .++++++||+.+++
T Consensus 128 GG~~~~------~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 128 GGSHGC------IHHNSVERYEPERDEWHLVAP--MLTRRIGVGVAVLNRLLYAVGGFDGTN----RLNSAECYYPERNE 195 (308)
T ss_dssp CCEETT------EECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSSC----BCCCEEEEETTTTE
T ss_pred cCCCCC------cccccEEEECCCCCeEeECCC--CCccccceEEEEECCEEEEEeCCCCCC----cCceEEEEeCCCCe
Confidence 997653 257899999999999999987 799999999999999999999986542 38999999999999
Q ss_pred eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceee
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~ 300 (647)
|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.. +|.+|.+|
T Consensus 196 W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~ 256 (308)
T 1zgk_A 196 WRMITAM-----NTIRSGAGVCVLHNCIYAAGGYDGQ-----------DQLNSVERYDVETETWTFVAP---MKHRRSAL 256 (308)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEECCC---CSSCCBSC
T ss_pred EeeCCCC-----CCccccceEEEECCEEEEEeCCCCC-----------CccceEEEEeCCCCcEEECCC---CCCCccce
Confidence 9999877 8899999999999999999998754 457899999999999999975 48899999
Q ss_pred EEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 301 s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
++++++++||||||.+. ...++++++||+.+++|+.+..
T Consensus 257 ~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 257 GITVHQGRIYVLGGYDG---------HTFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp EEEEETTEEEEECCBCS---------SCBCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCEEEEEcCcCC---------CcccceEEEEcCCCCEEeecCC
Confidence 99999999999999764 3457899999999999999866
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=330.29 Aligned_cols=239 Identities=19% Similarity=0.281 Sum_probs=210.8
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCe---EEEecCCCCCCCcceeEEEEECCEE
Q 006384 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISSPNSPPPRSAHQAVSWKNYL 137 (647)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~---W~~l~s~~~P~~R~~ha~v~~~~~i 137 (647)
....+|.+|.+|+++++ ++.||||||.. + ...++++++||+.+++ |+.+++ +|.+|..|++++++++|
T Consensus 45 ~~~~~p~~r~~~~~~~~---~~~l~v~GG~~--~--~~~~~~~~~~d~~~~~~~~W~~~~~--~p~~r~~~~~~~~~~~l 115 (301)
T 2vpj_A 45 FLPSITRKRRYVASVSL---HDRIYVIGGYD--G--RSRLSSVECLDYTADEDGVWYSVAP--MNVRRGLAGATTLGDMI 115 (301)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCBC--S--SCBCCCEEEEETTCCTTCCCEEECC--CSSCCBSCEEEEETTEE
T ss_pred eCCCCChhhccccEEEE---CCEEEEEcCCC--C--CccCceEEEEECCCCCCCeeEECCC--CCCCccceeEEEECCEE
Confidence 34568889999999999 89999999963 2 2367899999999999 999976 56899999999999999
Q ss_pred EEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 138 yv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
||+||.... ..++++++||+.+++|+.+++ +|.+|.+|++++++++||++||.... ..++++++||+.
T Consensus 116 yv~GG~~~~------~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~ 183 (301)
T 2vpj_A 116 YVSGGFDGS------RRHTSMERYDPNIDQWSMLGD--MQTAREGAGLVVASGVIYCLGGYDGL----NILNSVEKYDPH 183 (301)
T ss_dssp EEECCBCSS------CBCCEEEEEETTTTEEEEEEE--CSSCCBSCEEEEETTEEEEECCBCSS----CBCCCEEEEETT
T ss_pred EEEcccCCC------cccceEEEEcCCCCeEEECCC--CCCCcccceEEEECCEEEEECCCCCC----cccceEEEEeCC
Confidence 999998643 246899999999999999987 78999999999999999999998653 268999999999
Q ss_pred CCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCc
Q 006384 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (647)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R 297 (647)
+++|+.++++ |.+|.+|++++++++|||+||.... ...+++++||+.+++|+.+.. +|.+|
T Consensus 184 ~~~W~~~~~~-----p~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~---~p~~r 244 (301)
T 2vpj_A 184 TGHWTNVTPM-----ATKRSGAGVALLNDHIYVVGGFDGT-----------AHLSSVEAYNIRTDSWTTVTS---MTTPR 244 (301)
T ss_dssp TTEEEEECCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEEECC---CSSCC
T ss_pred CCcEEeCCCC-----CcccccceEEEECCEEEEEeCCCCC-----------cccceEEEEeCCCCcEEECCC---CCCcc
Confidence 9999999876 8899999999999999999998755 347899999999999999965 48899
Q ss_pred eeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 298 ~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.+|++++++++||||||... ...++++++||+.+++|+.+..
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 286 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAGYDG---------NSLLSSIECYDPIIDSWEVVTS 286 (301)
T ss_dssp BSCEEEEETTEEEEECCBCS---------SSBEEEEEEEETTTTEEEEEEE
T ss_pred cceeEEEECCEEEEEcCcCC---------CcccccEEEEcCCCCeEEEcCC
Confidence 99999999999999999764 2356899999999999999876
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=354.93 Aligned_cols=243 Identities=13% Similarity=0.217 Sum_probs=202.3
Q ss_pred CCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEec-CC---CCCCCcceeEEEEE--CCE
Q 006384 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SP---NSPPPRSAHQAVSW--KNY 136 (647)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~-s~---~~P~~R~~ha~v~~--~~~ 136 (647)
..+|.+|.+++++ + ++.||||||.. + ..++++|+||+.+++|+.++ ++ ..|.+|.+|+++++ +++
T Consensus 383 ~~~p~rr~g~~~~-~---~~~iyv~GG~~--~---~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~ 453 (695)
T 2zwa_A 383 ECPINRKFGDVDV-A---GNDVFYMGGSN--P---YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ 453 (695)
T ss_dssp CCTTCCBSCEEEE-C---SSCEEEECCBS--S---SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE
T ss_pred CCCCCCceeEEEE-E---CCEEEEECCCC--C---CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE
Confidence 3456667776554 5 79999999962 2 36789999999999999998 52 36899999999999 999
Q ss_pred EEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEE
Q 006384 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFD 215 (647)
Q Consensus 137 iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD 215 (647)
||||||...... .++++|+||+.+++|+.+++ +|.+|++|+++++ +++||||||..... ++++||
T Consensus 454 lyv~GG~~~~~~-----~~~dv~~yd~~t~~W~~~~~--~p~~R~~h~~~~~~~~~iyv~GG~~~~~-------~v~~yd 519 (695)
T 2zwa_A 454 LLLIGGRKAPHQ-----GLSDNWIFDMKTREWSMIKS--LSHTRFRHSACSLPDGNVLILGGVTEGP-------AMLLYN 519 (695)
T ss_dssp EEEECCBSSTTC-----BCCCCEEEETTTTEEEECCC--CSBCCBSCEEEECTTSCEEEECCBCSSC-------SEEEEE
T ss_pred EEEEcCCCCCCC-----ccccEEEEeCCCCcEEECCC--CCCCcccceEEEEcCCEEEEECCCCCCC-------CEEEEE
Confidence 999999865432 57999999999999999987 8999999999997 99999999986532 899999
Q ss_pred cCCCceEEeccCCCCCCCCCceeeeEEEeC---CEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe------EEE
Q 006384 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVYQ---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE------WSK 286 (647)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~------W~~ 286 (647)
+.+++|+.+++. +..|.+|.+|++++++ ++|||+||.... ....++++|+||+.+++ |+.
T Consensus 520 ~~t~~W~~~~~~--g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~---------~~~~~~~v~~yd~~~~~w~~~~~W~~ 588 (695)
T 2zwa_A 520 VTEEIFKDVTPK--DEFFQNSLVSAGLEFDPVSKQGIILGGGFMD---------QTTVSDKAIIFKYDAENATEPITVIK 588 (695)
T ss_dssp TTTTEEEECCCS--SGGGGSCCBSCEEEEETTTTEEEEECCBCTT---------SSCBCCEEEEEEECTTCSSCCEEEEE
T ss_pred CCCCceEEccCC--CCCCCcccceeEEEEeCCCCEEEEECCcCCC---------CCeeeCcEEEEEccCCccccceEEEE
Confidence 999999999874 2348899999988876 899999998644 12567899999999999 999
Q ss_pred eecCCCCCCCceeeEEEEEC-CeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 287 VKKIGMPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 287 v~~~g~~P~~R~~~s~~~~~-~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
+..+ +|.+|.+|++++++ ++||||||...... ....+++++||+.+++|+.+.
T Consensus 589 ~~~~--p~~~R~~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~v~~yd~~t~~W~~~~ 642 (695)
T 2zwa_A 589 KLQH--PLFQRYGSQIKYITPRKLLIVGGTSPSGL------FDRTNSIISLDPLSETLTSIP 642 (695)
T ss_dssp EEEC--GGGCCBSCEEEEEETTEEEEECCBCSSCC------CCTTTSEEEEETTTTEEEECC
T ss_pred cCCC--CCCCcccceEEEeCCCEEEEECCccCCCC------CCCCCeEEEEECCCCeEEEee
Confidence 8763 36889999999999 99999999864211 135799999999999999543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=311.26 Aligned_cols=264 Identities=17% Similarity=0.215 Sum_probs=204.3
Q ss_pred cCCCCC-CCCcceEEEEeccCCCEEEEEcCeec-CCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEE
Q 006384 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFY-NGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (647)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~~~~~~~lyv~GG~~~-~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iy 138 (647)
...++| .+|.+|+++++ +++||||||... .......++++|+||+.+++|+.++++. |.+|.+|++++++++||
T Consensus 47 ~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iy 122 (357)
T 2uvk_A 47 ALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAY 122 (357)
T ss_dssp ECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEE
T ss_pred ECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEE
Confidence 456678 89999999999 899999999722 1223457899999999999999999875 79999999999999999
Q ss_pred EEeCCcCCCC----------------------------CccccccCcEEEEECCCCcEEEcccCCCCCCcc-eeEEEEEC
Q 006384 139 IFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS-GHRMVLYK 189 (647)
Q Consensus 139 v~GG~~~~~~----------------------------~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~-~h~~~~~~ 189 (647)
||||...... ...+..++++++||+.+++|+.+.+ +|.+|. +|++++++
T Consensus 123 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~p~~~~~~~~~~~~~ 200 (357)
T 2uvk_A 123 VTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE--SPWYGTAGAAVVNKG 200 (357)
T ss_dssp EEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE--CSSCCCBSCEEEEET
T ss_pred EEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCC--CCCCCcccccEEEEC
Confidence 9999753210 0001246899999999999999977 776654 59999999
Q ss_pred CEEEEEecccCCCCceeeeCcEEEEEc--CCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCccc----
Q 006384 190 HKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN---- 263 (647)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~---- 263 (647)
++||||||..... ...+++++||+ .+++|+.+.+++ .|.+|.+|++++++++|||+||.... ....
T Consensus 201 ~~iyv~GG~~~~~---~~~~~v~~~d~d~~~~~W~~~~~~~---~~~~~~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~ 272 (357)
T 2uvk_A 201 DKTWLINGEAKPG---LRTDAVFELDFTGNNLKWNKLAPVS---SPDGVAGGFAGISNDSLIFAGGAGFK--GSRENYQN 272 (357)
T ss_dssp TEEEEECCEEETT---EECCCEEEEECC---CEEEECCCSS---TTTCCBSCEEEEETTEEEEECCEECT--THHHHHHT
T ss_pred CEEEEEeeecCCC---cccCceEEEEecCCCCcEEecCCCC---CCcccccceEEEECCEEEEEcCcccc--CCcccccc
Confidence 9999999986532 35789999987 899999998873 25567788899999999999997542 0000
Q ss_pred -C---CCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECC
Q 006384 264 -Q---SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (647)
Q Consensus 264 -~---~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (647)
. ......++++++||+.+++|+.+..+ |.+|.+|++++++++||||||.+.. ...+++|++|+++
T Consensus 273 g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~--------~~~~~~v~~l~~~ 341 (357)
T 2uvk_A 273 GKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL---SQGRAYGVSLPWNNSLLIIGGETAG--------GKAVTDSVLITVK 341 (357)
T ss_dssp TCSSTTTTCCCEECCEEEECC---CEEEEEC---SSCCBSSEEEEETTEEEEEEEECGG--------GCEEEEEEEEEC-
T ss_pred cceeccccccceeeEEEEecCCCceeeCCCC---CCCcccceeEEeCCEEEEEeeeCCC--------CCEeeeEEEEEEc
Confidence 0 01123457899999999999999764 8899999999999999999998652 2347999999999
Q ss_pred CCcEEEeEec
Q 006384 340 NHRWYPLELR 349 (647)
Q Consensus 340 t~~W~~l~~~ 349 (647)
+++|..+.+.
T Consensus 342 ~~~~~~~~~~ 351 (357)
T 2uvk_A 342 DNKVTVQNLE 351 (357)
T ss_dssp CCSCEEEC--
T ss_pred CcEeEeeecc
Confidence 9999998774
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=315.20 Aligned_cols=242 Identities=14% Similarity=0.155 Sum_probs=201.6
Q ss_pred CCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcc-c---CCCCCCcceeEEEEE--CCEE
Q 006384 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN-L---KGCPSPRSGHRMVLY--KHKI 192 (647)
Q Consensus 119 ~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~-~---~~~P~~R~~h~~~~~--~~~l 192 (647)
+..|.+|++|+++ +++.||||||... . .++++|+||+.+++|+.++ + ..+|.+|.+|+++++ +++|
T Consensus 383 ~~~p~rr~g~~~~-~~~~iyv~GG~~~---~----~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~l 454 (695)
T 2zwa_A 383 ECPINRKFGDVDV-AGNDVFYMGGSNP---Y----RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQL 454 (695)
T ss_dssp CCTTCCBSCEEEE-CSSCEEEECCBSS---S----BCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEE
T ss_pred CCCCCCceeEEEE-ECCEEEEECCCCC---C----CcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEE
Confidence 3345667665544 8999999999765 1 4689999999999999998 4 236999999999999 9999
Q ss_pred EEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCcee
Q 006384 193 IVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (647)
Q Consensus 193 yv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 271 (647)
|||||..... ..++++|+||+.+++|+.++++ |.+|++|+++++ +++||||||.... .
T Consensus 455 yv~GG~~~~~---~~~~dv~~yd~~t~~W~~~~~~-----p~~R~~h~~~~~~~~~iyv~GG~~~~-----------~-- 513 (695)
T 2zwa_A 455 LLIGGRKAPH---QGLSDNWIFDMKTREWSMIKSL-----SHTRFRHSACSLPDGNVLILGGVTEG-----------P-- 513 (695)
T ss_dssp EEECCBSSTT---CBCCCCEEEETTTTEEEECCCC-----SBCCBSCEEEECTTSCEEEECCBCSS-----------C--
T ss_pred EEEcCCCCCC---CccccEEEEeCCCCcEEECCCC-----CCCcccceEEEEcCCEEEEECCCCCC-----------C--
Confidence 9999986543 2689999999999999999877 899999999997 9999999998765 1
Q ss_pred eeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEEC---CeEEEecceeccccCccccccccCCcEEEEECCCCc------
Q 006384 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHK---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR------ 342 (647)
Q Consensus 272 ~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~---~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~------ 342 (647)
++++||+.+++|+.+...+..|.+|.+|++++++ ++||||||..... ...++++|+||+.+++
T Consensus 514 -~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~-------~~~~~~v~~yd~~~~~w~~~~~ 585 (695)
T 2zwa_A 514 -AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ-------TTVSDKAIIFKYDAENATEPIT 585 (695)
T ss_dssp -SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS-------SCBCCEEEEEEECTTCSSCCEE
T ss_pred -CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC-------CeeeCcEEEEEccCCccccceE
Confidence 8999999999999999877779999999988876 8999999985421 2467999999999999
Q ss_pred EEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCce
Q 006384 343 WYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGV 422 (647)
Q Consensus 343 W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (647)
|+.+...
T Consensus 586 W~~~~~~------------------------------------------------------------------------- 592 (695)
T 2zwa_A 586 VIKKLQH------------------------------------------------------------------------- 592 (695)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred EEEcCCC-------------------------------------------------------------------------
Confidence 5655540
Q ss_pred eeeecCCCCCcccccccccccCCCCCcCCccccccceeeec-CeEEEecceEeecCeEEeecceeccccCCccceEEe
Q 006384 423 LAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGK-DTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCI 499 (647)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~-~~Lyi~GG~~e~g~~e~tl~D~~~ldl~~~d~w~~~ 499 (647)
.|.+|++|++++.+ +.|||+||....+.. ..++++|.||+.+ ++|+.+
T Consensus 593 ---------------------------p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~-~~~~~v~~yd~~t-~~W~~~ 641 (695)
T 2zwa_A 593 ---------------------------PLFQRYGSQIKYITPRKLLIVGGTSPSGLF-DRTNSIISLDPLS-ETLTSI 641 (695)
T ss_dssp ---------------------------GGGCCBSCEEEEEETTEEEEECCBCSSCCC-CTTTSEEEEETTT-TEEEEC
T ss_pred ---------------------------CCCCcccceEEEeCCCEEEEECCccCCCCC-CCCCeEEEEECCC-CeEEEe
Confidence 26889999999999 999999998533211 2489999999999 999953
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=300.50 Aligned_cols=308 Identities=11% Similarity=0.021 Sum_probs=220.4
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCC--CcceeeCcEEEEECCCCeEEEecCCCCCCCccee--EEEE-ECCEEEEE
Q 006384 66 PSPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAH--QAVS-WKNYLYIF 140 (647)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyv~GG~~~~g--~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~h--a~v~-~~~~iyv~ 140 (647)
|.||..+++++++. +++|||+||...+. ......+.+++||+.+++|+.++.+ |.+|..| ++++ .+++|||+
T Consensus 183 ~~P~~~~~~av~~~-~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~--~~~~~~~~~~~~~~~~g~lyv~ 259 (656)
T 1k3i_A 183 DLPIVPAAAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT--VTKHDMFCPGISMDGNGQIVVT 259 (656)
T ss_dssp ECSSCCSEEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE--ECSCCCSSCEEEECTTSCEEEE
T ss_pred cCCCCceeEEEEec-CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc--CCCCCCccccccCCCCCCEEEe
Confidence 34556667777643 58999999964321 1112345799999999999988764 3555544 3444 48999999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
||... .++++||+.+++|+.++. +|.+|.+|+++++ +++|||+||..... ..++++++||+.++
T Consensus 260 GG~~~----------~~v~~yd~~t~~W~~~~~--~~~~R~~~s~~~~~dg~iyv~GG~~~~~---~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 260 GGNDA----------KKTSLYDSSSDSWIPGPD--MQVARGYQSSATMSDGRVFTIGGSWSGG---VFEKNGEVYSPSSK 324 (656)
T ss_dssp CSSST----------TCEEEEEGGGTEEEECCC--CSSCCSSCEEEECTTSCEEEECCCCCSS---SCCCCEEEEETTTT
T ss_pred CCCCC----------CceEEecCcCCceeECCC--CCccccccceEEecCCeEEEEeCcccCC---cccccceEeCCCCC
Confidence 99743 379999999999999986 8999999999999 99999999954322 25789999999999
Q ss_pred ceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCC----CC
Q 006384 220 KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP----PG 295 (647)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~----P~ 295 (647)
+|+.++......++.+|.. +++..++.||++||.++..+ .....+++++||+.++.|......... +.
T Consensus 325 ~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~-------~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVF-------QAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396 (656)
T ss_dssp EEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEE-------ECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred cceeCCCcccccccccccc-ceeecCCceEEEECCCCcEE-------EecCccceeeeecCCcceeecCCccccccccCC
Confidence 9999854321122444443 55557999999999875410 012356899999999998865332111 12
Q ss_pred CceeeEEEE---ECCeEEEecceeccccCccccccccCC---cEEEEECCCCcEEEeEecCCCcchhhhccccccCCCch
Q 006384 296 PRAGFSMCV---HKKRALLFGGVVDMEMKGDVIMSLFLN---ELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369 (647)
Q Consensus 296 ~R~~~s~~~---~~~~iyifGG~~~~~~~~~~~~~~~~n---dl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (647)
++..+++++ ++++||||||...... ...++ .+++||+.+++|..+.. +.
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~------~~~~~~~~~v~~yd~~~~~W~~~~~--~~----------------- 451 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQD------SDATTNAHIITLGEPGTSPNTVFAS--NG----------------- 451 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSS------SBCCCCEEEEECCSTTSCCEEEECT--TC-----------------
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCC------CCcCCcceEEEcCCCCCCCeeEEcc--CC-----------------
Confidence 333444443 4899999999753211 12234 79999999999998762 00
Q ss_pred hhhhccCchhhhhcccCcccchhhhhhhhhhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCc
Q 006384 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIV 449 (647)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (647)
T Consensus 452 -------------------------------------------------------------------------------- 451 (656)
T 1k3i_A 452 -------------------------------------------------------------------------------- 451 (656)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccceeee-cCeEEEecceEeec--CeEEeecceeccccCCccceEEeccCCch
Q 006384 450 KPCGRINSCMVVG-KDTLYVYGGMMEIN--DQEITLDDLYSLNLSKLDEWKCIIPASES 505 (647)
Q Consensus 450 ~P~~R~~~~~~v~-~~~Lyi~GG~~e~g--~~e~tl~D~~~ldl~~~d~w~~~~~~~~~ 505 (647)
||.+|..|+++++ +++|||+||..... +....+++++.||+.+ ++|+.+.+....
T Consensus 452 mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t-~~W~~~~~~~~~ 509 (656)
T 1k3i_A 452 LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ-DTFYKQNPNSIV 509 (656)
T ss_dssp CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG-TEEEECCCCSSC
T ss_pred CCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC-CceeecCCCCCc
Confidence 7999999999887 99999999974210 1123488999999998 999998876554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=288.80 Aligned_cols=258 Identities=10% Similarity=0.058 Sum_probs=182.2
Q ss_pred CCCCCCcce--EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEE
Q 006384 64 PAPSPRSNC--SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIF 140 (647)
Q Consensus 64 ~~P~~R~~~--s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~ 140 (647)
.+|.+|..+ +++++. +++|||+||. +. +++++||+.+++|..+++ +|.+|.+|+++++ +++|||+
T Consensus 236 ~~~~~~~~~~~~~~~~~--~g~lyv~GG~--~~------~~v~~yd~~t~~W~~~~~--~~~~R~~~s~~~~~dg~iyv~ 303 (656)
T 1k3i_A 236 VTVTKHDMFCPGISMDG--NGQIVVTGGN--DA------KKTSLYDSSSDSWIPGPD--MQVARGYQSSATMSDGRVFTI 303 (656)
T ss_dssp EEECSCCCSSCEEEECT--TSCEEEECSS--ST------TCEEEEEGGGTEEEECCC--CSSCCSSCEEEECTTSCEEEE
T ss_pred ccCCCCCCccccccCCC--CCCEEEeCCC--CC------CceEEecCcCCceeECCC--CCccccccceEEecCCeEEEE
Confidence 455566544 455544 7999999995 22 279999999999999976 4689999999999 9999999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccCC---CCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG---CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~---~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
||..... ..++++++||+.+++|+.++..+ ++..|. ++++..++++|+|||..+........++++.||+.
T Consensus 304 GG~~~~~-----~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 304 GGSWSGG-----VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp CCCCCSS-----SCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred eCcccCC-----cccccceEeCCCCCcceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 9953322 24689999999999999985322 344444 35556799999999986532111246799999999
Q ss_pred CCceEEeccCCCCC--CCCCceeeeEEE---eCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCC
Q 006384 218 QFKWQEIKPRFGSM--WPSPRSGFQFFV---YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (647)
Q Consensus 218 t~~W~~v~~~~~~~--~P~~R~~~s~~~---~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~ 292 (647)
++.|.......... .+.++..+++++ ++++|||+||.... .. .........+++||+.+++|..+. .+.
T Consensus 378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~--~~---~~~~~~~~~v~~yd~~~~~W~~~~-~~~ 451 (656)
T 1k3i_A 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY--QD---SDATTNAHIITLGEPGTSPNTVFA-SNG 451 (656)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS--SS---SBCCCCEEEEECCSTTSCCEEEEC-TTC
T ss_pred CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC--CC---CCcCCcceEEEcCCCCCCCeeEEc-cCC
Confidence 99987643321000 011233444443 48999999997532 00 000112237899999999999986 234
Q ss_pred CCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 293 PPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 293 ~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+|.+|.+|+++++ +++|||+||........ .....+++++||+.+++|+.+..
T Consensus 452 mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~---~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 452 LYFARTFHTSVVLPDGSTFITGGQRRGIPFE---DSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp CSSCCBSCEEEECTTSCEEEECCBSBCCTTC---CCSBCCCCEEEEGGGTEEEECCC
T ss_pred CCCCcccCCeEECCCCCEEEECCcccCcCcC---CCCcccceEEEcCCCCceeecCC
Confidence 5899999999988 99999999975421100 13457899999999999998654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.024 Score=58.28 Aligned_cols=193 Identities=13% Similarity=0.057 Sum_probs=111.8
Q ss_pred CcEEEEECCCCeEEEecC---CCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEE-EcccCCC
Q 006384 101 GDLYRYDVEKQEWKVISS---PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE-QLNLKGC 176 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s---~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~-~~~~~~~ 176 (647)
+.+..||+.++++...-. ...+.....+.++..++++||.... .+.+.++|+.+.+-. .++. .
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----------~~~v~viD~~t~~~~~~i~~--~ 83 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----------SHVIFAIDINTFKEVGRITG--F 83 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----------GTEEEEEETTTCCEEEEEEC--C
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----------CCEEEEEECcccEEEEEcCC--C
Confidence 578999999998864210 0113334456677789999998752 257999999988763 3432 1
Q ss_pred CCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEec-c
Q 006384 177 PSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGG-Y 254 (647)
Q Consensus 177 P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG-~ 254 (647)
...+.+++ .+++||+.... .+.|.++|+.+.+-...-...... .....-+.+++.++.|||..- .
T Consensus 84 ---~~p~~i~~~~~g~lyv~~~~---------~~~v~~iD~~t~~~~~~i~~g~~~-~~~~~p~~i~~~~~~lyv~~~~~ 150 (328)
T 3dsm_A 84 ---TSPRYIHFLSDEKAYVTQIW---------DYRIFIINPKTYEITGYIECPDMD-MESGSTEQMVQYGKYVYVNCWSY 150 (328)
T ss_dssp ---SSEEEEEEEETTEEEEEEBS---------CSEEEEEETTTTEEEEEEECTTCC-TTTCBCCCEEEETTEEEEEECTT
T ss_pred ---CCCcEEEEeCCCeEEEEECC---------CCeEEEEECCCCeEEEEEEcCCcc-ccCCCcceEEEECCEEEEEcCCC
Confidence 22233444 67899997642 367999999988754322221000 000022234457889998852 2
Q ss_pred cCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcE
Q 006384 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (647)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl 333 (647)
. +.+.++|+.+.+....-..+..| +.+++- ++++|+.......... ...-.+.|
T Consensus 151 ~----------------~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~----~~~~~~~v 205 (328)
T 3dsm_A 151 Q----------------NRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSP----YGYEAPSL 205 (328)
T ss_dssp C----------------CEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCS----SCBCCCEE
T ss_pred C----------------CEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCc----cccCCceE
Confidence 2 34899999988766544333222 223333 5787776532110000 00003679
Q ss_pred EEEECCCCcEE
Q 006384 334 YGFQLDNHRWY 344 (647)
Q Consensus 334 ~~yd~~t~~W~ 344 (647)
+++|+.+.+..
T Consensus 206 ~~id~~t~~v~ 216 (328)
T 3dsm_A 206 YRIDAETFTVE 216 (328)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCeEE
Confidence 99999887644
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0036 Score=61.94 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=108.0
Q ss_pred cceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCc
Q 006384 125 RSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLRE 204 (647)
Q Consensus 125 R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~ 204 (647)
-+-+.+...++.||+..|.... +.+.++|+.+++-..-.. +|..-++.+++..+++||+....
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~---------S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~------ 83 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGR---------SSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWR------ 83 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTS---------CEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS------
T ss_pred cccccEEEECCEEEEECCCCCC---------ceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEee------
Confidence 3445667778999999996542 578999999997655443 45566778889999999998653
Q ss_pred eeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeE
Q 006384 205 VRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (647)
Q Consensus 205 ~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (647)
.+.+++||+.+.+-.. .. |.+..|.+++..++.||+.-| + +.++.+|+.+.+-
T Consensus 84 ---~~~v~v~D~~tl~~~~--ti-----~~~~~Gwglt~dg~~L~vSdg-s----------------~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 84 ---NHEGFVYDLATLTPRA--RF-----RYPGEGWALTSDDSHLYMSDG-T----------------AVIRKLDPDTLQQ 136 (243)
T ss_dssp ---SSEEEEEETTTTEEEE--EE-----ECSSCCCEEEECSSCEEEECS-S----------------SEEEEECTTTCCE
T ss_pred ---CCEEEEEECCcCcEEE--EE-----eCCCCceEEeeCCCEEEEECC-C----------------CeEEEEeCCCCeE
Confidence 4689999998866433 22 223356677766888888766 2 2489999998765
Q ss_pred EEeecCCCCCCC-ceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 285 SKVKKIGMPPGP-RAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 285 ~~v~~~g~~P~~-R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
...-..+..+.+ +.---+..++++||+--- ..++|.+.|+.+++=
T Consensus 137 ~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw--------------~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 137 VGSIKVTAGGRPLDNLNELEWVNGELLANVW--------------LTSRIARIDPASGKV 182 (243)
T ss_dssp EEEEECEETTEECCCEEEEEEETTEEEEEET--------------TTTEEEEECTTTCBE
T ss_pred EEEEEEccCCcccccceeeEEeCCEEEEEEC--------------CCCeEEEEECCCCCE
Confidence 443222211222 111234556888774321 257899999998863
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.012 Score=58.08 Aligned_cols=189 Identities=17% Similarity=0.158 Sum_probs=117.7
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~ 149 (647)
+-+.+.+. ++.||+-.|.+ +. +.+.++|+.+++-..... +|..-++.+++..+++||+....
T Consensus 22 ftqGL~~~---~~~LyestG~~--g~-----S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~------ 83 (243)
T 3mbr_X 22 FTEGLFYL---RGHLYESTGET--GR-----SSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWR------ 83 (243)
T ss_dssp CEEEEEEE---TTEEEEEECCT--TS-----CEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS------
T ss_pred ccccEEEE---CCEEEEECCCC--CC-----ceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEee------
Confidence 33477777 78999999952 22 478999999987654332 34455677888889999998653
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceE-EeccCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRF 228 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~ 228 (647)
-+.+++||+.+.+-.. . .|.+..+.+++.-+++||+.-| .+.++.+|+.+.+-. .+....
T Consensus 84 -----~~~v~v~D~~tl~~~~--t--i~~~~~Gwglt~dg~~L~vSdg----------s~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 84 -----NHEGFVYDLATLTPRA--R--FRYPGEGWALTSDDSHLYMSDG----------TAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp -----SSEEEEEETTTTEEEE--E--EECSSCCCEEEECSSCEEEECS----------SSEEEEECTTTCCEEEEEECEE
T ss_pred -----CCEEEEEECCcCcEEE--E--EeCCCCceEEeeCCCEEEEECC----------CCeEEEEeCCCCeEEEEEEEcc
Confidence 2679999998876432 2 1223456677777788998755 357999999997643 232221
Q ss_pred CCCCCCCce-eeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCC-CCC--------CCce
Q 006384 229 GSMWPSPRS-GFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-MPP--------GPRA 298 (647)
Q Consensus 229 ~~~~P~~R~-~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g-~~P--------~~R~ 298 (647)
. +.+.. -..+...+++||+--.. .++|.+.|+.+.+-...-.++ ..| ..-.
T Consensus 145 ~---g~~~~~lNeLe~~~G~lyanvw~----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~v 205 (243)
T 3mbr_X 145 G---GRPLDNLNELEWVNGELLANVWL----------------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDV 205 (243)
T ss_dssp T---TEECCCEEEEEEETTEEEEEETT----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSC
T ss_pred C---CcccccceeeEEeCCEEEEEECC----------------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCc
Confidence 1 22211 12234458888854322 346999999887644432221 111 1112
Q ss_pred eeEEEEE--CCeEEEecc
Q 006384 299 GFSMCVH--KKRALLFGG 314 (647)
Q Consensus 299 ~~s~~~~--~~~iyifGG 314 (647)
--+.|+. .+++||.|-
T Consensus 206 lNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 206 LNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred eEEEEEcCCCCEEEEECC
Confidence 3455555 578888885
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.092 Score=54.51 Aligned_cols=185 Identities=15% Similarity=0.157 Sum_probs=103.1
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
++.||+... .+.+++||+.+. .|+.-.... ...+.+..++.||+..+ -..+
T Consensus 103 ~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~-----~~~~p~~~~~~v~v~~~------------~g~l 155 (376)
T 3q7m_A 103 GGHVYIGSE----------KAQVYALNTSDGTVAWQTKVAGE-----ALSRPVVSDGLVLIHTS------------NGQL 155 (376)
T ss_dssp TTEEEEEET----------TSEEEEEETTTCCEEEEEECSSC-----CCSCCEEETTEEEEECT------------TSEE
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEEeCCCc-----eEcCCEEECCEEEEEcC------------CCeE
Confidence 688887544 147899999876 476543211 12223455788887543 1468
Q ss_pred EEEECCCCc--EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCC--ceEEeccCCCCCCCC
Q 006384 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPS 234 (647)
Q Consensus 159 ~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~ 234 (647)
+.||+.+++ |..-........+.....++.++.||+ |.. -..++.||+.+. .|+.-...+.+....
T Consensus 156 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~-g~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 225 (376)
T 3q7m_A 156 QALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVV-GGD---------NGRVSAVLMEQGQMIWQQRISQATGSTEI 225 (376)
T ss_dssp EEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEE-CCT---------TTEEEEEETTTCCEEEEEECCC-------
T ss_pred EEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEE-EcC---------CCEEEEEECCCCcEEEEEecccCCCCccc
Confidence 999998875 876543111112222344555777776 321 135889998765 477543321110000
Q ss_pred Cc---eeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCCCCceeeEEEEECCeE
Q 006384 235 PR---SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRA 309 (647)
Q Consensus 235 ~R---~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P~~R~~~s~~~~~~~i 309 (647)
.+ .....++.++.||+.+ ... .+++||+.+. .|+.... ...+.++.++.|
T Consensus 226 ~~~~~~~~~p~~~~~~v~~~~-~~g----------------~l~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~l 280 (376)
T 3q7m_A 226 DRLSDVDTTPVVVNGVVFALA-YNG----------------NLTALDLRSGQIMWKRELG--------SVNDFIVDGNRI 280 (376)
T ss_dssp ----CCCCCCEEETTEEEEEC-TTS----------------CEEEEETTTCCEEEEECCC--------CEEEEEEETTEE
T ss_pred ccccccCCCcEEECCEEEEEe-cCc----------------EEEEEECCCCcEEeeccCC--------CCCCceEECCEE
Confidence 11 1233345578887754 322 2789998654 6765311 123456668888
Q ss_pred EEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 310 yifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
|+... -..|+.||+.+.+
T Consensus 281 ~~~~~---------------~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 281 YLVDQ---------------NDRVMALTIDGGV 298 (376)
T ss_dssp EEEET---------------TCCEEEEETTTCC
T ss_pred EEEcC---------------CCeEEEEECCCCc
Confidence 88653 1359999998765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.04 Score=56.59 Aligned_cols=208 Identities=13% Similarity=0.071 Sum_probs=119.4
Q ss_pred CCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCCCcceeEEEE-ECCEEEEEeCCc
Q 006384 67 SPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVS-WKNYLYIFGGEF 144 (647)
Q Consensus 67 ~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~-~~~~iyv~GG~~ 144 (647)
.......+++. +++|||.... .+.+.++|+.+.+-. .++.. .. -+.++. -+++||+....
T Consensus 42 lg~~~~~i~~~---~~~lyv~~~~---------~~~v~viD~~t~~~~~~i~~~--~~---p~~i~~~~~g~lyv~~~~- 103 (328)
T 3dsm_A 42 LGDVAQSMVIR---DGIGWIVVNN---------SHVIFAIDINTFKEVGRITGF--TS---PRYIHFLSDEKAYVTQIW- 103 (328)
T ss_dssp CBSCEEEEEEE---TTEEEEEEGG---------GTEEEEEETTTCCEEEEEECC--SS---EEEEEEEETTEEEEEEBS-
T ss_pred cCccceEEEEE---CCEEEEEEcC---------CCEEEEEECcccEEEEEcCCC--CC---CcEEEEeCCCeEEEEECC-
Confidence 33444666666 7899988762 257899999988763 44322 12 233444 57899998742
Q ss_pred CCCCCccccccCcEEEEECCCCcEEE-cccCCCC-CCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceE
Q 006384 145 TSPNQERFHHYKDFWMLDLKTNQWEQ-LNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (647)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~-~~~~~~P-~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (647)
-+.|++||+.+.+-.. ++..... ....-+.+++.+++||+..-- ..+.|.++|+.+.+..
T Consensus 104 ----------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~--------~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 104 ----------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS--------YQNRILKIDTETDKVV 165 (328)
T ss_dssp ----------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT--------TCCEEEEEETTTTEEE
T ss_pred ----------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC--------CCCEEEEEECCCCeEE
Confidence 2579999999887543 3221100 000333455578999997420 1357999999998765
Q ss_pred EeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeE
Q 006384 223 EIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (647)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s 301 (647)
..-.. + ..| +.++.. ++++|+....... . .......+.++++|+.+.+....-.. |....-..
T Consensus 166 ~~i~~--g--~~p---~~i~~~~dG~l~v~~~~~~~--~----~~~~~~~~~v~~id~~t~~v~~~~~~---~~g~~p~~ 229 (328)
T 3dsm_A 166 DELTI--G--IQP---TSLVMDKYNKMWTITDGGYE--G----SPYGYEAPSLYRIDAETFTVEKQFKF---KLGDWPSE 229 (328)
T ss_dssp EEEEC--S--SCB---CCCEECTTSEEEEEBCCBCT--T----CSSCBCCCEEEEEETTTTEEEEEEEC---CTTCCCEE
T ss_pred EEEEc--C--CCc---cceEEcCCCCEEEEECCCcc--C----CccccCCceEEEEECCCCeEEEEEec---CCCCCcee
Confidence 43222 1 122 233333 6788776532211 0 00001135799999998876643222 22222344
Q ss_pred EEEE--CCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 302 MCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 302 ~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
+++. ++.||+..+ .|++||+.+.+.
T Consensus 230 la~~~d~~~lyv~~~-----------------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 230 VQLNGTRDTLYWINN-----------------DIWRMPVEADRV 256 (328)
T ss_dssp EEECTTSCEEEEESS-----------------SEEEEETTCSSC
T ss_pred EEEecCCCEEEEEcc-----------------EEEEEECCCCce
Confidence 5555 466777542 489999987663
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.023 Score=56.63 Aligned_cols=188 Identities=11% Similarity=0.039 Sum_probs=114.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCcc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~ 151 (647)
..+.+. ++.||+-.|.+ + .+.+.++|+.+.+-..... +|..-++..++..+++||+....
T Consensus 46 qGL~~~---~~~LyestG~~--g-----~S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~-------- 105 (262)
T 3nol_A 46 EGFFYR---NGYFYESTGLN--G-----RSSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWK-------- 105 (262)
T ss_dssp EEEEEE---TTEEEEEEEET--T-----EEEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS--------
T ss_pred ceEEEE---CCEEEEECCCC--C-----CceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEee--------
Confidence 556666 68999999952 2 1478899999987553322 23444567788889999999653
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceE-EeccCCCC
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRFGS 230 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~~~ 230 (647)
-+.+++||+.+.+-..-- +.+-.+.+++.-++.||+.-| .+.++.+|+.+.+-. .++....+
T Consensus 106 ---~~~v~v~D~~t~~~~~ti----~~~~eG~glt~dg~~L~~SdG----------s~~i~~iDp~T~~v~~~I~V~~~g 168 (262)
T 3nol_A 106 ---NGLGFVWNIRNLRQVRSF----NYDGEGWGLTHNDQYLIMSDG----------TPVLRFLDPESLTPVRTITVTAHG 168 (262)
T ss_dssp ---SSEEEEEETTTCCEEEEE----ECSSCCCCEEECSSCEEECCS----------SSEEEEECTTTCSEEEEEECEETT
T ss_pred ---CCEEEEEECccCcEEEEE----ECCCCceEEecCCCEEEEECC----------CCeEEEEcCCCCeEEEEEEeccCC
Confidence 267999999887643221 222355667766778888654 357999999987643 33322100
Q ss_pred CCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCC-CC-------CCCceeeEE
Q 006384 231 MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-MP-------PGPRAGFSM 302 (647)
Q Consensus 231 ~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g-~~-------P~~R~~~s~ 302 (647)
.|..... .+...++.||+--- ..+.|.+.|+.+.+-...-... .. |..-.-.+.
T Consensus 169 -~~~~~lN-ELe~~~G~lyan~w----------------~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGI 230 (262)
T 3nol_A 169 -EELPELN-ELEWVDGEIFANVW----------------QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGI 230 (262)
T ss_dssp -EECCCEE-EEEEETTEEEEEET----------------TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEE
T ss_pred -ccccccc-eeEEECCEEEEEEc----------------cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEE
Confidence 0111111 23344888886322 2356999999887654433221 11 111223455
Q ss_pred EEE--CCeEEEecc
Q 006384 303 CVH--KKRALLFGG 314 (647)
Q Consensus 303 ~~~--~~~iyifGG 314 (647)
|+. .+++||.|-
T Consensus 231 A~dp~~~~lfVTGK 244 (262)
T 3nol_A 231 AWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTTTEEEEEET
T ss_pred EEcCCCCEEEEECC
Confidence 665 578888885
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.047 Score=56.79 Aligned_cols=198 Identities=11% Similarity=0.090 Sum_probs=108.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCC-----CCcceeEEEEECCEEEEEeCCcC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP-----PPRSAHQAVSWKNYLYIFGGEFT 145 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P-----~~R~~ha~v~~~~~iyv~GG~~~ 145 (647)
+.++. ++.||+.... +.+++||+.+. .|+.-.....+ ......+.+..++.||+...
T Consensus 48 ~p~v~---~~~v~~~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--- 111 (376)
T 3q7m_A 48 HPALA---DNVVYAADRA----------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE--- 111 (376)
T ss_dssp CCEEE---TTEEEEECTT----------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET---
T ss_pred ccEEE---CCEEEEEcCC----------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC---
Confidence 34455 7888887641 37899999765 57754322110 12233344556888988643
Q ss_pred CCCCccccccCcEEEEECCCCc--EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--e
Q 006384 146 SPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--W 221 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W 221 (647)
-..+++||+.+++ |+.-... ......++.++.||+..+ ...++.||+.+.+ |
T Consensus 112 ---------~g~l~a~d~~tG~~~W~~~~~~-----~~~~~p~~~~~~v~v~~~----------~g~l~~~d~~tG~~~W 167 (376)
T 3q7m_A 112 ---------KAQVYALNTSDGTVAWQTKVAG-----EALSRPVVSDGLVLIHTS----------NGQLQALNEADGAVKW 167 (376)
T ss_dssp ---------TSEEEEEETTTCCEEEEEECSS-----CCCSCCEEETTEEEEECT----------TSEEEEEETTTCCEEE
T ss_pred ---------CCEEEEEECCCCCEEEEEeCCC-----ceEcCCEEECCEEEEEcC----------CCeEEEEECCCCcEEE
Confidence 1469999998775 7653321 112223456888887433 2468999998765 8
Q ss_pred EEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCC--CCCCCc
Q 006384 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIG--MPPGPR 297 (647)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g--~~P~~R 297 (647)
+.-...+. ...+...+.++.++.||+ |.... .++.||+.+. .|+...... .....|
T Consensus 168 ~~~~~~~~---~~~~~~~~~~~~~~~v~~-g~~~g----------------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 227 (376)
T 3q7m_A 168 TVNLDMPS---LSLRGESAPTTAFGAAVV-GGDNG----------------RVSAVLMEQGQMIWQQRISQATGSTEIDR 227 (376)
T ss_dssp EEECCC--------CCCCCCEEETTEEEE-CCTTT----------------EEEEEETTTCCEEEEEECCC---------
T ss_pred EEeCCCCc---eeecCCCCcEEECCEEEE-EcCCC----------------EEEEEECCCCcEEEEEecccCCCCccccc
Confidence 76543210 111222334455777665 43322 3788998644 677643210 000011
Q ss_pred ---eeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCC--cEEE
Q 006384 298 ---AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (647)
Q Consensus 298 ---~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~--~W~~ 345 (647)
.....++.++.+|+.+. ...|+.||+.+. .|..
T Consensus 228 ~~~~~~~p~~~~~~v~~~~~---------------~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 228 LSDVDTTPVVVNGVVFALAY---------------NGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp --CCCCCCEEETTEEEEECT---------------TSCEEEEETTTCCEEEEE
T ss_pred ccccCCCcEEECCEEEEEec---------------CcEEEEEECCCCcEEeec
Confidence 12333456777777642 235899998776 4653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.049 Score=54.58 Aligned_cols=202 Identities=12% Similarity=0.048 Sum_probs=119.5
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCc
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~ 150 (647)
-+.+.+.+ ++.||+..|.+ + .+.+.++|+.+++-..... .+....+..++..++.||+..-.
T Consensus 23 ~~Gl~~~~--dg~Lyvstg~~--~-----~s~v~~iD~~tg~v~~~i~--l~~~~fgeGi~~~g~~lyv~t~~------- 84 (266)
T 2iwa_A 23 TQGLVYAE--NDTLFESTGLY--G-----RSSVRQVALQTGKVENIHK--MDDSYFGEGLTLLNEKLYQVVWL------- 84 (266)
T ss_dssp EEEEEECS--TTEEEEEECST--T-----TCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEETT-------
T ss_pred cccEEEeC--CCeEEEECCCC--C-----CCEEEEEECCCCCEEEEEe--cCCCcceEEEEEeCCEEEEEEec-------
Confidence 36777775 48999988741 1 2479999999987553322 22334556777789999999642
Q ss_pred cccccCcEEEEECCCCcEE-EcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceE-EeccCC
Q 006384 151 RFHHYKDFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRF 228 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~-~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-~v~~~~ 228 (647)
-+.+++||+.+.+=. .++. + .-.+.+++.-++++|+.-| .+.++.+|+.+.+-. .++...
T Consensus 85 ----~~~v~viD~~t~~v~~~i~~---g-~~~g~glt~Dg~~l~vs~g----------s~~l~viD~~t~~v~~~I~Vg~ 146 (266)
T 2iwa_A 85 ----KNIGFIYDRRTLSNIKNFTH---Q-MKDGWGLATDGKILYGSDG----------TSILYEIDPHTFKLIKKHNVKY 146 (266)
T ss_dssp ----CSEEEEEETTTTEEEEEEEC---C-SSSCCEEEECSSSEEEECS----------SSEEEEECTTTCCEEEEEECEE
T ss_pred ----CCEEEEEECCCCcEEEEEEC---C-CCCeEEEEECCCEEEEECC----------CCeEEEEECCCCcEEEEEEECC
Confidence 267999999876532 2222 1 1233445555678888644 367999999987643 333221
Q ss_pred CCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC-CC--------CCCCcee
Q 006384 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI-GM--------PPGPRAG 299 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~-g~--------~P~~R~~ 299 (647)
. ..|..+.. .+...++.||+--.. .+.+.+.|+.+.+-...-.. +. .|..-.-
T Consensus 147 ~-~~p~~~~n-ele~~dg~lyvn~~~----------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~ 208 (266)
T 2iwa_A 147 N-GHRVIRLN-ELEYINGEVWANIWQ----------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVL 208 (266)
T ss_dssp T-TEECCCEE-EEEEETTEEEEEETT----------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCE
T ss_pred C-Ccccccce-eEEEECCEEEEecCC----------------CCeEEEEECCCCcEEEEEECCCcccccccccccccCce
Confidence 0 01211222 333347788765322 34699999988754332221 10 0111123
Q ss_pred eEEEEE--CCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 300 ~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
.++++. ++++||.|+. .+.|++.++..
T Consensus 209 nGIa~~~~~~~lfVTgk~--------------~~~v~~i~l~~ 237 (266)
T 2iwa_A 209 NGIAWDQENKRIFVTGKL--------------WPKLFEIKLHL 237 (266)
T ss_dssp EEEEEETTTTEEEEEETT--------------CSEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEECCC--------------CCeEEEEEEec
Confidence 455665 4689999875 46688887654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.022 Score=56.87 Aligned_cols=184 Identities=15% Similarity=0.092 Sum_probs=111.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCcc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~ 151 (647)
..+.+. ++.||+..|. ++.+.++|+.+.+-.... +|..-++..++..+++||+....
T Consensus 58 qGL~~~---~~~Ly~stG~---------~g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~-------- 114 (268)
T 3nok_A 58 QGLVFH---QGHFFESTGH---------QGTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWT-------- 114 (268)
T ss_dssp EEEEEE---TTEEEEEETT---------TTEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESS--------
T ss_pred ceEEEE---CCEEEEEcCC---------CCEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEcc--------
Confidence 566666 7899999994 234889999987543322 23344566778889999998653
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEE-eccCCCC
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGS 230 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~~~~~ 230 (647)
-+.+++||+.+.+-..-- +.+-.+.+++.-+++||+.-| .+.++.+|+.+.+-.. +.....
T Consensus 115 ---~~~v~V~D~~Tl~~~~ti----~~~~eGwGLt~Dg~~L~vSdG----------s~~l~~iDp~T~~v~~~I~V~~~- 176 (268)
T 3nok_A 115 ---EGLLFTWSGMPPQRERTT----RYSGEGWGLCYWNGKLVRSDG----------GTMLTFHEPDGFALVGAVQVKLR- 176 (268)
T ss_dssp ---SCEEEEEETTTTEEEEEE----ECSSCCCCEEEETTEEEEECS----------SSEEEEECTTTCCEEEEEECEET-
T ss_pred ---CCEEEEEECCcCcEEEEE----eCCCceeEEecCCCEEEEECC----------CCEEEEEcCCCCeEEEEEEeCCC-
Confidence 267999999887643221 223345677777889999765 3679999999976443 322210
Q ss_pred CCCCCcee-eeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCC-C--------CCCCceee
Q 006384 231 MWPSPRSG-FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG-M--------PPGPRAGF 300 (647)
Q Consensus 231 ~~P~~R~~-~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g-~--------~P~~R~~~ 300 (647)
+.+... ..+...++.||+--- ..+.|.+.|+.+.+-...-..+ . .+..-.--
T Consensus 177 --g~~v~~lNeLe~~dG~lyanvw----------------~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlN 238 (268)
T 3nok_A 177 --GQPVELINELECANGVIYANIW----------------HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLN 238 (268)
T ss_dssp --TEECCCEEEEEEETTEEEEEET----------------TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEE
T ss_pred --CcccccccccEEeCCEEEEEEC----------------CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceE
Confidence 111111 123344888885321 2357999999887544332211 0 11111223
Q ss_pred EEEEE--CCeEEEecc
Q 006384 301 SMCVH--KKRALLFGG 314 (647)
Q Consensus 301 s~~~~--~~~iyifGG 314 (647)
+.|+. .++|||.|-
T Consensus 239 GIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 239 GIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEECTTTCCEEEEET
T ss_pred EEEEcCCCCEEEEeCC
Confidence 44554 578888874
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.018 Score=57.54 Aligned_cols=157 Identities=11% Similarity=0.067 Sum_probs=101.6
Q ss_pred eEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceee
Q 006384 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRY 207 (647)
Q Consensus 128 ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~ 207 (647)
..+...++.||+..|.... +.+.++|+.+++-..-.. ++..-++.+++..+++||+....
T Consensus 46 qGL~~~~~~LyestG~~g~---------S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~--------- 105 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGR---------SSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWK--------- 105 (262)
T ss_dssp EEEEEETTEEEEEEEETTE---------EEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESS---------
T ss_pred ceEEEECCEEEEECCCCCC---------ceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEee---------
Confidence 4455558999999986432 578899999997554433 44455667788899999998653
Q ss_pred eCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
-+.+++||+.+.+-..- . +.+-.|.+++.-++.||+.-| + +.++.+|+.+.+-...
T Consensus 106 ~~~v~v~D~~t~~~~~t--i-----~~~~eG~glt~dg~~L~~SdG-s----------------~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRS--F-----NYDGEGWGLTHNDQYLIMSDG-T----------------PVLRFLDPESLTPVRT 161 (262)
T ss_dssp SSEEEEEETTTCCEEEE--E-----ECSSCCCCEEECSSCEEECCS-S----------------SEEEEECTTTCSEEEE
T ss_pred CCEEEEEECccCcEEEE--E-----ECCCCceEEecCCCEEEEECC-C----------------CeEEEEcCCCCeEEEE
Confidence 46899999998764322 2 222355666666778888765 2 2489999998654433
Q ss_pred ecCCC--CCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 288 KKIGM--PPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 288 ~~~g~--~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
-..+. -|..... -+...+++||+-- -..+.|.+.|+.+.+=
T Consensus 162 I~V~~~g~~~~~lN-ELe~~~G~lyan~--------------w~~~~I~vIDp~tG~V 204 (262)
T 3nol_A 162 ITVTAHGEELPELN-ELEWVDGEIFANV--------------WQTNKIVRIDPETGKV 204 (262)
T ss_dssp EECEETTEECCCEE-EEEEETTEEEEEE--------------TTSSEEEEECTTTCBE
T ss_pred EEeccCCccccccc-eeEEECCEEEEEE--------------ccCCeEEEEECCCCcE
Confidence 22111 1111111 2445588887522 1247899999998863
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.058 Score=54.04 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=98.0
Q ss_pred eEEEEEC-CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCcee
Q 006384 128 HQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVR 206 (647)
Q Consensus 128 ha~v~~~-~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~ 206 (647)
|.++..+ +.||+..|... -+.+.++|+.+++-..--+ ++....+.+++..+++||+....
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---------~s~v~~iD~~tg~v~~~i~--l~~~~fgeGi~~~g~~lyv~t~~-------- 84 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---------RSSVRQVALQTGKVENIHK--MDDSYFGEGLTLLNEKLYQVVWL-------- 84 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---------TCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEETT--------
T ss_pred ccEEEeCCCeEEEECCCCC---------CCEEEEEECCCCCEEEEEe--cCCCcceEEEEEeCCEEEEEEec--------
Confidence 5566555 89999887432 2679999999998554333 34444566788889999998653
Q ss_pred eeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE
Q 006384 207 YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (647)
Q Consensus 207 ~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (647)
.+.+++||+.+.+= +...+.+ . -.+.+++.-++.+|+.-| + +.++++|+.+.+-..
T Consensus 85 -~~~v~viD~~t~~v--~~~i~~g-~---~~g~glt~Dg~~l~vs~g-s----------------~~l~viD~~t~~v~~ 140 (266)
T 2iwa_A 85 -KNIGFIYDRRTLSN--IKNFTHQ-M---KDGWGLATDGKILYGSDG-T----------------SILYEIDPHTFKLIK 140 (266)
T ss_dssp -CSEEEEEETTTTEE--EEEEECC-S---SSCCEEEECSSSEEEECS-S----------------SEEEEECTTTCCEEE
T ss_pred -CCEEEEEECCCCcE--EEEEECC-C---CCeEEEEECCCEEEEECC-C----------------CeEEEEECCCCcEEE
Confidence 46799999987643 2222111 1 234445555778888654 2 358999998866444
Q ss_pred eecCCCCCCCc-eeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 287 VKKIGMPPGPR-AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 287 v~~~g~~P~~R-~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
.-..+..+.+. .-..+.+.+++||+--. ..+.|.+.|+.+++
T Consensus 141 ~I~Vg~~~~p~~~~nele~~dg~lyvn~~--------------~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 141 KHNVKYNGHRVIRLNELEYINGEVWANIW--------------QTDCIARISAKDGT 183 (266)
T ss_dssp EEECEETTEECCCEEEEEEETTEEEEEET--------------TSSEEEEEETTTCC
T ss_pred EEEECCCCcccccceeEEEECCEEEEecC--------------CCCeEEEEECCCCc
Confidence 32222111111 12234445888775432 24789999998875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.042 Score=56.97 Aligned_cols=185 Identities=11% Similarity=0.028 Sum_probs=103.2
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
..+|+.|+. -+.+++||+.+++-...-... ..-++++.. +..||+.|+.. ..+.
T Consensus 2 ~~l~vs~~~---------d~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~d-----------~~i~ 57 (391)
T 1l0q_A 2 TFAYIANSE---------SDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAHS-----------NDVS 57 (391)
T ss_dssp EEEEEEETT---------TTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGGG-----------TEEE
T ss_pred CEEEEEcCC---------CCEEEEEECCCCeEEEEeecC----CCcceEEECCCCCEEEEECCCC-----------CeEE
Confidence 467777772 247899999888655332211 112233332 34677777532 5689
Q ss_pred EEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCce
Q 006384 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (647)
Q Consensus 160 ~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (647)
+||+.+++....-. .+ ..-..++.. +.+||+.|.. -+.+++||+.+.+....... ...
T Consensus 58 v~d~~~~~~~~~~~--~~--~~v~~~~~spdg~~l~~~~~~---------~~~v~v~d~~~~~~~~~~~~-------~~~ 117 (391)
T 1l0q_A 58 IIDTATNNVIATVP--AG--SSPQGVAVSPDGKQVYVTNMA---------SSTLSVIDTTSNTVAGTVKT-------GKS 117 (391)
T ss_dssp EEETTTTEEEEEEE--CS--SSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC-------SSS
T ss_pred EEECCCCeEEEEEE--CC--CCccceEECCCCCEEEEEECC---------CCEEEEEECCCCeEEEEEeC-------CCC
Confidence 99998887654433 11 122233333 3456665542 24689999998765444322 111
Q ss_pred eeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CC-eEEEec
Q 006384 238 GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK-RALLFG 313 (647)
Q Consensus 238 ~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~-~iyifG 313 (647)
..+++.. +..||+.++... .+++||+.+.+....-..+. .-..+++. ++ .||+.+
T Consensus 118 ~~~~~~s~dg~~l~~~~~~~~----------------~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~ 176 (391)
T 1l0q_A 118 PLGLALSPDGKKLYVTNNGDK----------------TVSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVAN 176 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTT----------------EEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCC----------------EEEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEe
Confidence 2334443 446777776543 38899998887665543221 12334443 33 565655
Q ss_pred ceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
+. -+.|++||+.+.....
T Consensus 177 ~~--------------~~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 177 FD--------------SMSISVIDTVTNSVID 194 (391)
T ss_dssp TT--------------TTEEEEEETTTTEEEE
T ss_pred CC--------------CCEEEEEECCCCeEEE
Confidence 43 2459999998875443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.56 Score=47.22 Aligned_cols=208 Identities=14% Similarity=0.089 Sum_probs=105.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
+.+++.|. ++.||+.... +....-.+.++++|+.+.+....... ....+.++.. ++.+|+.++.
T Consensus 44 ~~~~~s~d-g~~l~~~~~~---~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~------ 109 (353)
T 3vgz_A 44 YEMAYSQQ-ENALWLATSQ---SRKLDKGGVVYRLDPVTLEVTQAIHN----DLKPFGATINNTTQTLWFGNTV------ 109 (353)
T ss_dssp EEEEEETT-TTEEEEEECC---CTTTEESEEEEEECTTTCCEEEEEEE----SSCCCSEEEETTTTEEEEEETT------
T ss_pred cceEECCC-CCEEEEEcCC---CcCCCCCccEEEEcCCCCeEEEEEec----CCCcceEEECCCCCEEEEEecC------
Confidence 45566652 4678776642 11111235799999988765432211 1112333333 4568887653
Q ss_pred ccccccCcEEEEECCCCcEEE-cccCCCCC-----CcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQ-LNLKGCPS-----PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~-~~~~~~P~-----~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
-+.+++||+.+.+-.. +....... +..-+.+++. +++||+.+... ...+++||+.+.+-
T Consensus 110 -----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~~i~~~d~~~~~~ 176 (353)
T 3vgz_A 110 -----NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK--------ESVIWVVDGGNIKL 176 (353)
T ss_dssp -----TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS--------SCEEEEEETTTTEE
T ss_pred -----CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC--------CceEEEEcCCCCce
Confidence 1468999998887433 22211010 1112333333 45677765321 24699999987654
Q ss_pred EEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCcee
Q 006384 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (647)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~ 299 (647)
...-.. ....-+.++.. +..||+... . ..+++||+.+.+-......+........
T Consensus 177 ~~~~~~------~~~~~~~~~~s~dg~~l~~~~~-~----------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 177 KTAIQN------TGKMSTGLALDSEGKRLYTTNA-D----------------GELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEECC------CCTTCCCCEEETTTTEEEEECT-T----------------SEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred EEEecC------CCCccceEEECCCCCEEEEEcC-C----------------CeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 433221 11111223333 455666543 2 2477899887765443332111112223
Q ss_pred eEEEEE--CCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 300 FSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 300 ~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
.++++. ++.+|+.... .+.|++||+.+.+.
T Consensus 234 ~~~~~s~dg~~l~~~~~~--------------~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 234 INISLDTARQRAFITDSK--------------AAEVLVVDTRNGNI 265 (353)
T ss_dssp EEEEEETTTTEEEEEESS--------------SSEEEEEETTTCCE
T ss_pred ceEEECCCCCEEEEEeCC--------------CCEEEEEECCCCcE
Confidence 344444 3456555421 25699999977654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.08 Score=54.84 Aligned_cols=194 Identities=13% Similarity=0.055 Sum_probs=105.9
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
.++++.|. +..||+.|+. -+.+++||+.+.+....-.. ...-.+++.. +..||+.|..
T Consensus 35 ~~~~~s~d-g~~l~~~~~~---------d~~i~v~d~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~~------ 94 (391)
T 1l0q_A 35 MGAVISPD-GTKVYVANAH---------SNDVSIIDTATNNVIATVPA----GSSPQGVAVSPDGKQVYVTNMA------ 94 (391)
T ss_dssp EEEEECTT-SSEEEEEEGG---------GTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEETT------
T ss_pred ceEEECCC-CCEEEEECCC---------CCeEEEEECCCCeEEEEEEC----CCCccceEECCCCCEEEEEECC------
Confidence 45566652 3567777752 24789999988876543221 1122233332 4557776542
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
-..+++||+.+++...... .......++.. +..||+.++. -+.+++||+.+.+....-..
T Consensus 95 -----~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 95 -----SSTLSVIDTTSNTVAGTVK----TGKSPLGLALSPDGKKLYVTNNG---------DKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp -----TTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEEC
T ss_pred -----CCEEEEEECCCCeEEEEEe----CCCCcceEEECCCCCEEEEEeCC---------CCEEEEEECCCCcEEEEEec
Confidence 1469999999887554432 11222333333 3467777653 24789999988776544332
Q ss_pred CCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE
Q 006384 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
...-..++.. +..||+.++.+. .+++||+.+......... ...-.++++.
T Consensus 157 -------~~~~~~~~~~~dg~~l~~~~~~~~----------------~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~ 208 (391)
T 1l0q_A 157 -------GRSPKGIAVTPDGTKVYVANFDSM----------------SISVIDTVTNSVIDTVKV-----EAAPSGIAVN 208 (391)
T ss_dssp -------CSSEEEEEECTTSSEEEEEETTTT----------------EEEEEETTTTEEEEEEEC-----SSEEEEEEEC
T ss_pred -------CCCcceEEECCCCCEEEEEeCCCC----------------EEEEEECCCCeEEEEEec-----CCCccceEEC
Confidence 1111233333 446777766543 388999988765544321 1122233333
Q ss_pred -CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 306 -~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
++..+++++... ..+.|++||+.+.+
T Consensus 209 ~~g~~l~~~~~~~-----------~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 209 PEGTKAYVTNVDK-----------YFNTVSMIDTGTNK 235 (391)
T ss_dssp TTSSEEEEEEECS-----------SCCEEEEEETTTTE
T ss_pred CCCCEEEEEecCc-----------CCCcEEEEECCCCe
Confidence 454444444210 13569999998764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.33 Score=47.65 Aligned_cols=199 Identities=7% Similarity=-0.026 Sum_probs=107.4
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~ 148 (647)
.-+++++.+ ++.|||.... .+.+.+||+. .+...+..+. ....-++++.. ++.||+....
T Consensus 21 ~p~~i~~d~--~g~l~v~~~~---------~~~v~~~~~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~----- 81 (300)
T 2qc5_A 21 GPYGITSSE--DGKVWFTQHK---------ANKISSLDQS-GRIKEFEVPT--PDAKVMCLIVSSLGDIWFTENG----- 81 (300)
T ss_dssp CEEEEEECT--TSCEEEEETT---------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECTTSCEEEEETT-----
T ss_pred CcceeeECC--CCCEEEEcCC---------CCeEEEECCC-CceEEEECCC--CCCcceeEEECCCCCEEEEecC-----
Confidence 335566655 6788886541 1468899988 7666554321 11223333333 4678887531
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
...+++||+. ..+..+.... ....-+.+++. ++.||+.... .+.+++||+. .+...+...
T Consensus 82 ------~~~v~~~d~~-g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~-g~~~~~~~~ 142 (300)
T 2qc5_A 82 ------ANKIGKLSKK-GGFTEYPLPQ--PDSGPYGITEGLNGDIWFTQLN---------GDRIGKLTAD-GTIYEYDLP 142 (300)
T ss_dssp ------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECSTTCEEEEETT---------TTEEEEECTT-SCEEEEECS
T ss_pred ------CCeEEEECCC-CCeEEecCCC--CCCCCccceECCCCCEEEEccC---------CCeEEEECCC-CCEEEccCC
Confidence 2468899988 7776554311 12223344443 5788876432 2468889987 665544321
Q ss_pred CCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCC-ceeeEEEEE
Q 006384 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP-RAGFSMCVH 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~-R~~~s~~~~ 305 (647)
.....-++++.. ++.||+...... .+++|++ +.++..+.. |.. ..-.++++-
T Consensus 143 -----~~~~~~~~i~~d~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d 196 (300)
T 2qc5_A 143 -----NKGSYPAFITLGSDNALWFTENQNN----------------SIGRITN-TGKLEEYPL----PTNAAAPVGITSG 196 (300)
T ss_dssp -----STTCCEEEEEECTTSSEEEEETTTT----------------EEEEECT-TCCEEEEEC----SSTTCCEEEEEEC
T ss_pred -----CCCCCceeEEECCCCCEEEEecCCC----------------eEEEECC-CCcEEEeeC----CCCCCCcceEEEC
Confidence 011122333433 566777653222 3888998 566665432 111 122333333
Q ss_pred -CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeE
Q 006384 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 306 -~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~ 347 (647)
++.||+.... .+.|++||+ +..+..+.
T Consensus 197 ~~g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 197 NDGALWFVEIM--------------GNKIGRITT-TGEISEYD 224 (300)
T ss_dssp TTSSEEEEETT--------------TTEEEEECT-TCCEEEEE
T ss_pred CCCCEEEEccC--------------CCEEEEEcC-CCcEEEEE
Confidence 5677775421 245889988 56666554
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.63 E-value=0.22 Score=49.83 Aligned_cols=195 Identities=13% Similarity=0.085 Sum_probs=97.9
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~ 150 (647)
++...| ++.+++.|+. + ..+..||+.+.+-...-.. .......+.+ ++.+++.|+..
T Consensus 70 ~~~~~~--~~~~l~s~~~--d-------~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d------ 128 (312)
T 4ery_A 70 DVAWSS--DSNLLVSASD--D-------KTLKIWDVSSGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGSFD------ 128 (312)
T ss_dssp EEEECT--TSSEEEEEET--T-------SEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSSEEEEEETT------
T ss_pred EEEEcC--CCCEEEEECC--C-------CEEEEEECCCCcEEEEEcC----CCCCEEEEEEcCCCCEEEEEeCC------
Confidence 344444 4566666662 1 3678888887654322111 1111122233 45566777643
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
..+.+||+.+..-...-. .....-..+.+ ++.+++.|+.. ..+.+||+.+.+....-...
T Consensus 129 -----~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~~wd~~~~~~~~~~~~~ 190 (312)
T 4ery_A 129 -----ESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYD---------GLCRIWDTASGQCLKTLIDD 190 (312)
T ss_dssp -----SCEEEEETTTCCEEEEEC----CCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCCEEEEECCS
T ss_pred -----CcEEEEECCCCEEEEEec----CCCCcEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeeEEecc
Confidence 358889998775432211 11111222333 55677777753 45888998876543322110
Q ss_pred CCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeE-EEEEC
Q 006384 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS-MCVHK 306 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s-~~~~~ 306 (647)
..+. -..++.. ++.+++.|+.++. +.+||+.+..-...-. +.......-.. ....+
T Consensus 191 ----~~~~-~~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (312)
T 4ery_A 191 ----DNPP-VSFVKFSPNGKYILAATLDNT----------------LKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTG 248 (312)
T ss_dssp ----SCCC-EEEEEECTTSSEEEEEETTTE----------------EEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSS
T ss_pred ----CCCc-eEEEEECCCCCEEEEEcCCCe----------------EEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCC
Confidence 0111 1112222 5566677766544 7888887765433322 11111111111 22235
Q ss_pred CeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 307 ~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+.+++.|+.. +.|.+||+.+..
T Consensus 249 ~~~l~sg~~d--------------g~i~vwd~~~~~ 270 (312)
T 4ery_A 249 GKWIVSGSED--------------NLVYIWNLQTKE 270 (312)
T ss_dssp SCEEEECCTT--------------SCEEEEETTTCC
T ss_pred CcEEEEECCC--------------CEEEEEECCCch
Confidence 6677777643 458999987754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.14 Score=54.27 Aligned_cols=206 Identities=12% Similarity=0.032 Sum_probs=113.4
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CC-EEEEEeCCcCCCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KN-YLYIFGGEFTSPNQ 149 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~-~iyv~GG~~~~~~~ 149 (647)
++...| +++.+++++. ++. ...++++|+.+.+...+.... .. ...+.+ ++ .|++.+....
T Consensus 183 ~~~~Sp--dg~~la~~s~--~~~----~~~i~~~d~~tg~~~~l~~~~----~~-~~~~~~spdg~~la~~~~~~g---- 245 (415)
T 2hqs_A 183 SPAWSP--DGSKLAYVTF--ESG----RSALVIQTLANGAVRQVASFP----RH-NGAPAFSPDGSKLAFALSKTG---- 245 (415)
T ss_dssp EEEECT--TSSEEEEEEC--TTS----SCEEEEEETTTCCEEEEECCS----SC-EEEEEECTTSSEEEEEECTTS----
T ss_pred eeEEcC--CCCEEEEEEe--cCC----CcEEEEEECCCCcEEEeecCC----Cc-ccCEEEcCCCCEEEEEEecCC----
Confidence 344555 4555555552 111 147899999998887665421 11 223333 34 4554544321
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
...+|+||+.+.....+... + .....+.+ +++.+++++..+. ...+|.+|+.+..-..+...
T Consensus 246 -----~~~i~~~d~~~~~~~~l~~~--~---~~~~~~~~spdg~~l~~~s~~~g------~~~i~~~d~~~~~~~~l~~~ 309 (415)
T 2hqs_A 246 -----SLNLYVMDLASGQIRQVTDG--R---SNNTEPTWFPDSQNLAFTSDQAG------RPQVYKVNINGGAPQRITWE 309 (415)
T ss_dssp -----SCEEEEEETTTCCEEECCCC--S---SCEEEEEECTTSSEEEEEECTTS------SCEEEEEETTSSCCEECCCS
T ss_pred -----CceEEEEECCCCCEEeCcCC--C---CcccceEECCCCCEEEEEECCCC------CcEEEEEECCCCCEEEEecC
Confidence 25799999999887665431 1 11222333 4554555443211 24689999988775554322
Q ss_pred CCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-
Q 006384 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~- 305 (647)
.....+++.. +++.+++++.... ...++++|+.+.....+... . ...+++..
T Consensus 310 -------~~~~~~~~~spdG~~l~~~~~~~g-------------~~~i~~~d~~~~~~~~l~~~-----~-~~~~~~~sp 363 (415)
T 2hqs_A 310 -------GSQNQDADVSSDGKFMVMVSSNGG-------------QQHIAKQDLATGGVQVLSST-----F-LDETPSLAP 363 (415)
T ss_dssp -------SSEEEEEEECTTSSEEEEEEECSS-------------CEEEEEEETTTCCEEECCCS-----S-SCEEEEECT
T ss_pred -------CCcccCeEECCCCCEEEEEECcCC-------------ceEEEEEECCCCCEEEecCC-----C-CcCCeEEcC
Confidence 1222233333 5555555543211 24589999998887665431 1 22233333
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+++.+++++.... ...||++|+.......+..
T Consensus 364 dg~~l~~~s~~~~-----------~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 364 NGTMVIYSSSQGM-----------GSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp TSSEEEEEEEETT-----------EEEEEEEETTSCCEEECCC
T ss_pred CCCEEEEEEcCCC-----------ccEEEEEECCCCcEEEeeC
Confidence 6777777765321 2369999998877776654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.14 Score=49.74 Aligned_cols=215 Identities=10% Similarity=0.040 Sum_probs=109.2
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCC-CeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK-QEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~-~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
.++...| ++..+++++. ..+++||+.+ .+...+.... ....-..++.. ++..+++++....
T Consensus 45 ~~~~~sp--dg~~l~~~~~----------~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~--- 107 (297)
T 2ojh_A 45 EAPNWSP--DGKYLLLNSE----------GLLYRLSLAGDPSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEF--- 107 (297)
T ss_dssp EEEEECT--TSSEEEEEET----------TEEEEEESSSCCSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTT---
T ss_pred EeeEECC--CCCEEEEEcC----------CeEEEEeCCCCCCceEecccc--ccccccceEECCCCCEEEEEEeCCC---
Confidence 4555666 5666666541 3789999998 7776665322 11111222222 4555555543221
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
....+|.+++.+.....+... .. .+.++.. ++ .|++.++... ...+|.+++.+.....+...
T Consensus 108 ----~~~~l~~~~~~~~~~~~~~~~---~~--~~~~~~spdg~~l~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 108 ----GKSAIYLLPSTGGTPRLMTKN---LP--SYWHGWSPDGKSFTYCGIRDQ-------VFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp ----SSCEEEEEETTCCCCEECCSS---SS--EEEEEECTTSSEEEEEEEETT-------EEEEEEEETTTCCEEECCCS
T ss_pred ----CcceEEEEECCCCceEEeecC---CC--ccceEECCCCCEEEEEECCCC-------ceEEEEEECCCCcceEcccC
Confidence 136799999988776555431 11 2222222 34 4554554322 23678888887776655433
Q ss_pred CCCCCCCCceeeeEEEe-CCE-EEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE
Q 006384 228 FGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
+. ....++.. ++. |++.+.... ...+|.+++.......+... ......+++.
T Consensus 172 -----~~--~~~~~~~s~dg~~l~~~~~~~~--------------~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~s 225 (297)
T 2ojh_A 172 -----EG--RNDGPDYSPDGRWIYFNSSRTG--------------QMQIWRVRVDGSSVERITDS-----AYGDWFPHPS 225 (297)
T ss_dssp -----SS--CEEEEEECTTSSEEEEEECTTS--------------SCEEEEEETTSSCEEECCCC-----SEEEEEEEEC
T ss_pred -----CC--ccccceECCCCCEEEEEecCCC--------------CccEEEECCCCCCcEEEecC-----CcccCCeEEC
Confidence 11 11222332 444 444433222 23588888777666655321 1112222222
Q ss_pred -CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 306 -~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+++.+++++....... ........|++||+.+.....+..
T Consensus 226 ~dg~~l~~~~~~~~~~~---~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 226 PSGDKVVFVSYDADVFD---HPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp TTSSEEEEEEEETTCCS---CCSSEEEEEEEEETTSCSCEEEEE
T ss_pred CCCCEEEEEEcCCCCCc---ccccCceEEEEEecCCCCceeeec
Confidence 5666666655321100 000012569999999887766553
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.13 Score=51.54 Aligned_cols=195 Identities=13% Similarity=0.057 Sum_probs=101.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
.++...| ++.++++|+. + +.+..||+.+.+........ ........+.+ ++.+++.|+..
T Consensus 101 ~~~~~~~--~~~~l~~~~~--d-------~~i~~~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d----- 162 (337)
T 1gxr_A 101 RSCKLLP--DGCTLIVGGE--A-------STLSIWDLAAPTPRIKAELT--SSAPACYALAISPDSKVCFSCCSD----- 162 (337)
T ss_dssp EEEEECT--TSSEEEEEES--S-------SEEEEEECCCC--EEEEEEE--CSSSCEEEEEECTTSSEEEEEETT-----
T ss_pred EEEEEcC--CCCEEEEEcC--C-------CcEEEEECCCCCcceeeecc--cCCCceEEEEECCCCCEEEEEeCC-----
Confidence 3445555 5666666662 1 36888999887754332211 11111222233 45566666642
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
..+.+||+.+......-. ..... -.+++.. ++.+++.|+.. ..+.+||+.+.+-......
T Consensus 163 ------g~v~~~d~~~~~~~~~~~--~~~~~-i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~- 223 (337)
T 1gxr_A 163 ------GNIAVWDLHNQTLVRQFQ--GHTDG-ASCIDISNDGTKLWTGGLD---------NTVRSWDLREGRQLQQHDF- 223 (337)
T ss_dssp ------SCEEEEETTTTEEEEEEC--CCSSC-EEEEEECTTSSEEEEEETT---------SEEEEEETTTTEEEEEEEC-
T ss_pred ------CcEEEEeCCCCceeeeee--cccCc-eEEEEECCCCCEEEEEecC---------CcEEEEECCCCceEeeecC-
Confidence 458899998876443322 11111 1222222 55666666642 4688999887654333221
Q ss_pred CCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-C
Q 006384 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~ 306 (647)
+.+ -.+++.. ++.++++|+.++. +.+||+.+..-..+.. ....-.++++. +
T Consensus 224 ----~~~--v~~~~~s~~~~~l~~~~~~~~----------------i~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~ 276 (337)
T 1gxr_A 224 ----TSQ--IFSLGYCPTGEWLAVGMESSN----------------VEVLHVNKPDKYQLHL-----HESCVLSLKFAYC 276 (337)
T ss_dssp ----SSC--EEEEEECTTSSEEEEEETTSC----------------EEEEETTSSCEEEECC-----CSSCEEEEEECTT
T ss_pred ----CCc--eEEEEECCCCCEEEEEcCCCc----------------EEEEECCCCCeEEEcC-----CccceeEEEECCC
Confidence 111 2233333 5667777776544 7888887665333321 11112233333 5
Q ss_pred CeEEEecceeccccCccccccccCCcEEEEECCCCcEE
Q 006384 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 307 ~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
+.+++.|+.. ..|.+||+.+..-.
T Consensus 277 ~~~l~~~~~d--------------g~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 277 GKWFVSTGKD--------------NLLNAWRTPYGASI 300 (337)
T ss_dssp SSEEEEEETT--------------SEEEEEETTTCCEE
T ss_pred CCEEEEecCC--------------CcEEEEECCCCeEE
Confidence 6677776642 45899998876543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.35 Score=47.49 Aligned_cols=193 Identities=7% Similarity=-0.012 Sum_probs=100.5
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
-+++++.+ ++.||+.... .+.+++||+ +.+...+.... .....+.++.. ++.||+....
T Consensus 101 ~~~i~~~~--~g~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 160 (299)
T 2z2n_A 101 PYGITEGP--NGDIWFTEMN---------GNRIGRITD-DGKIREYELPN--KGSYPSFITLGSDNALWFTENQ------ 160 (299)
T ss_dssp EEEEEECT--TSCEEEEETT---------TTEEEEECT-TCCEEEEECSS--TTCCEEEEEECTTSCEEEEETT------
T ss_pred ceeeEECC--CCCEEEEecC---------CceEEEECC-CCCEEEecCCC--CCCCCceEEEcCCCCEEEEeCC------
Confidence 34555554 5778776531 136888998 56665543211 11223344443 5678886521
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
...+++||+ +.+...+.... . ...-+.+++. ++.||+.... .+.+++||+ +.++..+....
T Consensus 161 -----~~~i~~~~~-~g~~~~~~~~~-~-~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~-~g~~~~~~~~~ 222 (299)
T 2z2n_A 161 -----NNAIGRITE-SGDITEFKIPT-P-ASGPVGITKGNDDALWFVEII---------GNKIGRITT-SGEITEFKIPT 222 (299)
T ss_dssp -----TTEEEEECT-TCCEEEEECSS-T-TCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred -----CCEEEEEcC-CCcEEEeeCCC-C-CCcceeEEECCCCCEEEEccC---------CceEEEECC-CCcEEEEECCC
Confidence 256899999 77776653211 1 1112233333 4678876432 246889999 77776553220
Q ss_pred CCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECC
Q 006384 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~ 307 (647)
+ ...-.+++.. ++.|||...... .+++||+ +.....+.... ....-.++++.++
T Consensus 223 ----~-~~~~~~i~~~~~g~l~v~~~~~~----------------~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~g 277 (299)
T 2z2n_A 223 ----P-NARPHAITAGAGIDLWFTEWGAN----------------KIGRLTS-NNIIEEYPIQI---KSAEPHGICFDGE 277 (299)
T ss_dssp ----T-TCCEEEEEECSTTCEEEEETTTT----------------EEEEEET-TTEEEEEECSS---SSCCEEEEEECSS
T ss_pred ----C-CCCceeEEECCCCCEEEeccCCc----------------eEEEECC-CCceEEEeCCC---CCCccceEEecCC
Confidence 1 1112233333 567777653222 3888998 44555443211 1112234444456
Q ss_pred eEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 308 ~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
.||+... .+.|++|++.+.
T Consensus 278 ~l~v~~~---------------~~~l~~~~~~~~ 296 (299)
T 2z2n_A 278 TIWFAME---------------CDKIGKLTLIKD 296 (299)
T ss_dssp CEEEEET---------------TTEEEEEEEC--
T ss_pred CEEEEec---------------CCcEEEEEcCcc
Confidence 6776542 245888888764
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.6 Score=45.76 Aligned_cols=199 Identities=6% Similarity=-0.025 Sum_probs=108.5
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
-+++++.+ ++.||+.... .+.+++||+. ..+..+..+. ....-++++.. ++.||+....
T Consensus 17 ~~~i~~d~--~g~l~v~~~~---------~~~v~~~d~~-~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 76 (299)
T 2z2n_A 17 PYGITVSD--KGKVWITQHK---------ANMISCINLD-GKITEYPLPT--PDAKVMCLTISSDGEVWFTENA------ 76 (299)
T ss_dssp EEEEEECT--TSCEEEEETT---------TTEEEEECTT-CCEEEEECSS--TTCCEEEEEECTTSCEEEEETT------
T ss_pred ccceEECC--CCCEEEEecC---------CCcEEEEcCC-CCeEEecCCc--ccCceeeEEECCCCCEEEeCCC------
Confidence 35566655 6778876431 1368899998 7777654321 11223333332 5678887532
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCC-CCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P-~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
...+++||+. ..+..+.. | ....-+.++.. ++.||+.... ...+++||+ +.+...+...
T Consensus 77 -----~~~i~~~~~~-g~~~~~~~---~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~d~-~g~~~~~~~~ 137 (299)
T 2z2n_A 77 -----ANKIGRITKK-GIIKEYTL---PNPDSAPYGITEGPNGDIWFTEMN---------GNRIGRITD-DGKIREYELP 137 (299)
T ss_dssp -----TTEEEEECTT-SCEEEEEC---SSTTCCEEEEEECTTSCEEEEETT---------TTEEEEECT-TCCEEEEECS
T ss_pred -----CCeEEEECCC-CcEEEEeC---CCcCCCceeeEECCCCCEEEEecC---------CceEEEECC-CCCEEEecCC
Confidence 1458899986 55555442 2 12223344443 5788886532 246888998 6666554332
Q ss_pred CCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-
Q 006384 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~- 305 (647)
.....-.+++.. ++.||+..... ..+++||+ +.+...+... .....-.++++.
T Consensus 138 -----~~~~~~~~i~~~~~g~l~v~~~~~----------------~~i~~~~~-~g~~~~~~~~---~~~~~~~~i~~~~ 192 (299)
T 2z2n_A 138 -----NKGSYPSFITLGSDNALWFTENQN----------------NAIGRITE-SGDITEFKIP---TPASGPVGITKGN 192 (299)
T ss_dssp -----STTCCEEEEEECTTSCEEEEETTT----------------TEEEEECT-TCCEEEEECS---STTCCEEEEEECT
T ss_pred -----CCCCCCceEEEcCCCCEEEEeCCC----------------CEEEEEcC-CCcEEEeeCC---CCCCcceeEEECC
Confidence 111222344444 56788754322 23889998 6666655321 111122334443
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
++.||+.... .+.|++||+ +..+..+..
T Consensus 193 ~g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 220 (299)
T 2z2n_A 193 DDALWFVEII--------------GNKIGRITT-SGEITEFKI 220 (299)
T ss_dssp TSSEEEEETT--------------TTEEEEECT-TCCEEEEEC
T ss_pred CCCEEEEccC--------------CceEEEECC-CCcEEEEEC
Confidence 4677775421 245899999 777665543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.064 Score=53.53 Aligned_cols=154 Identities=7% Similarity=-0.003 Sum_probs=99.3
Q ss_pred eEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceee
Q 006384 128 HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRY 207 (647)
Q Consensus 128 ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~ 207 (647)
+.+...++.||+..|.. ..+.++|+.+++-..-. ++..-++.+++..+++||+....
T Consensus 58 qGL~~~~~~Ly~stG~~-----------g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~--------- 114 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQ-----------GTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWT--------- 114 (268)
T ss_dssp EEEEEETTEEEEEETTT-----------TEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESS---------
T ss_pred ceEEEECCEEEEEcCCC-----------CEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEcc---------
Confidence 55566689999999853 33889999988643222 23344667788889999998653
Q ss_pred eCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
-+.+++||+.+.+-..- . +.+-.|.+++..+..||+.-| + +.++.+|+.+.+-...
T Consensus 115 ~~~v~V~D~~Tl~~~~t--i-----~~~~eGwGLt~Dg~~L~vSdG-s----------------~~l~~iDp~T~~v~~~ 170 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERT--T-----RYSGEGWGLCYWNGKLVRSDG-G----------------TMLTFHEPDGFALVGA 170 (268)
T ss_dssp SCEEEEEETTTTEEEEE--E-----ECSSCCCCEEEETTEEEEECS-S----------------SEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCcCcEEEE--E-----eCCCceeEEecCCCEEEEECC-C----------------CEEEEEcCCCCeEEEE
Confidence 46899999998764422 2 222345677777889999876 2 2489999998765443
Q ss_pred ecCCCCCCCc-eeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 288 KKIGMPPGPR-AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 288 ~~~g~~P~~R-~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
-..+.-+.+. .---+...+++||+-- -..+.|.+.|+.+.+
T Consensus 171 I~V~~~g~~v~~lNeLe~~dG~lyanv--------------w~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 171 VQVKLRGQPVELINELECANGVIYANI--------------WHSSDVLEIDPATGT 212 (268)
T ss_dssp EECEETTEECCCEEEEEEETTEEEEEE--------------TTCSEEEEECTTTCB
T ss_pred EEeCCCCcccccccccEEeCCEEEEEE--------------CCCCeEEEEeCCCCc
Confidence 2211112111 1122445588877421 124789999999886
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.42 E-value=0.11 Score=52.99 Aligned_cols=150 Identities=11% Similarity=0.076 Sum_probs=76.9
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
.++.+.| ++.++++|+. -+.+..||+.+.+|..+..... ....-.+++.. ++.+++.|+..
T Consensus 12 ~~~~~s~--~~~~l~~~~~---------d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d------ 73 (372)
T 1k8k_C 12 SCHAWNK--DRTQIAICPN---------NHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTD------ 73 (372)
T ss_dssp CEEEECT--TSSEEEEECS---------SSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETT------
T ss_pred EEEEECC--CCCEEEEEeC---------CCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCC------
Confidence 3455555 5677778873 2478899999987665443211 11112223333 45666666642
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCc-eEEeccCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPRF 228 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~~~ 228 (647)
..+.+||+.+..+....... .....-.+++.. ++.+++.|+.. ..+.+||+.+.. |..+....
T Consensus 74 -----g~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 74 -----RNAYVWTLKGRTWKPTLVIL-RINRAARCVRWAPNEKKFAVGSGS---------RVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp -----SCEEEEEEETTEEEEEEECC-CCSSCEEEEEECTTSSEEEEEETT---------SSEEEEEEETTTTEEEEEEEC
T ss_pred -----CeEEEEECCCCeeeeeEEee-cCCCceeEEEECCCCCEEEEEeCC---------CEEEEEEecCCCcceeeeeee
Confidence 35788888888776554311 111112222222 55667777643 346667666543 33322221
Q ss_pred CCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
. +....-.+++.. ++.+++.|+.++.
T Consensus 139 ~---~~~~~i~~~~~~~~~~~l~~~~~dg~ 165 (372)
T 1k8k_C 139 K---PIRSTVLSLDWHPNSVLLAAGSCDFK 165 (372)
T ss_dssp T---TCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred c---ccCCCeeEEEEcCCCCEEEEEcCCCC
Confidence 0 112222233333 5667777776654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.81 Score=46.03 Aligned_cols=203 Identities=11% Similarity=0.065 Sum_probs=103.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCC-----CcceeEEEEE--CCEEEEEeCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPP-----PRSAHQAVSW--KNYLYIFGGE 143 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~-----~R~~ha~v~~--~~~iyv~GG~ 143 (647)
+.+++.|. ++.||+.++. .+.+++||+.+.+-. .+....... +..-+.++.. ++.+|+.+..
T Consensus 92 ~~~~~s~d-g~~l~v~~~~---------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 161 (353)
T 3vgz_A 92 FGATINNT-TQTLWFGNTV---------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG 161 (353)
T ss_dssp CSEEEETT-TTEEEEEETT---------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES
T ss_pred ceEEECCC-CCEEEEEecC---------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC
Confidence 34445542 3456666551 147899999887643 333211111 1112334443 4678887632
Q ss_pred cCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
. -..+++||+.+.+-...-. . .....+.+++. ++.||+... .+.+++||+.+.+-
T Consensus 162 ~----------~~~i~~~d~~~~~~~~~~~--~-~~~~~~~~~~s~dg~~l~~~~~----------~~~i~~~d~~~~~~ 218 (353)
T 3vgz_A 162 K----------ESVIWVVDGGNIKLKTAIQ--N-TGKMSTGLALDSEGKRLYTTNA----------DGELITIDTADNKI 218 (353)
T ss_dssp S----------SCEEEEEETTTTEEEEEEC--C-CCTTCCCCEEETTTTEEEEECT----------TSEEEEEETTTTEE
T ss_pred C----------CceEEEEcCCCCceEEEec--C-CCCccceEEECCCCCEEEEEcC----------CCeEEEEECCCCeE
Confidence 1 1469999998876443322 0 11112223333 446666543 24678899988764
Q ss_pred EEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCcee
Q 006384 222 QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (647)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~ 299 (647)
........ . .......+++.. ++.||+..... +.+++||+.+.+....-..+ .+
T Consensus 219 ~~~~~~~~-~-~~~~~~~~~~~s~dg~~l~~~~~~~----------------~~v~~~d~~~~~~~~~~~~~---~~--- 274 (353)
T 3vgz_A 219 LSRKKLLD-D-GKEHFFINISLDTARQRAFITDSKA----------------AEVLVVDTRNGNILAKVAAP---ES--- 274 (353)
T ss_dssp EEEEECCC-S-SSCCCEEEEEEETTTTEEEEEESSS----------------SEEEEEETTTCCEEEEEECS---SC---
T ss_pred EEEEEcCC-C-CCCcccceEEECCCCCEEEEEeCCC----------------CEEEEEECCCCcEEEEEEcC---CC---
Confidence 33222210 0 111122223333 55677665332 34889999887655443332 22
Q ss_pred eEEEEE-C-CeEEEecceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 300 FSMCVH-K-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 300 ~s~~~~-~-~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
..+++. + +.+|+.+.. -+.|++||+.+.+...
T Consensus 275 ~~~~~s~dg~~l~v~~~~--------------~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 275 LAVLFNPARNEAYVTHRQ--------------AGKVSVIDAKSYKVVK 308 (353)
T ss_dssp CCEEEETTTTEEEEEETT--------------TTEEEEEETTTTEEEE
T ss_pred ceEEECCCCCEEEEEECC--------------CCeEEEEECCCCeEEE
Confidence 223443 3 446665432 2569999998876543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.27 Score=49.95 Aligned_cols=111 Identities=9% Similarity=0.153 Sum_probs=62.6
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--C--CEEEEEeCCcCCCCC
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQ 149 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~--~~iyv~GG~~~~~~~ 149 (647)
+.+.| ++.+++.|+. + ..+.+||+....+..+.... ........+.+ . +.+++.|+..
T Consensus 17 ~~~s~--~~~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d----- 78 (379)
T 3jrp_A 17 AVLDY--YGKRLATCSS--D-------KTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYD----- 78 (379)
T ss_dssp EEECS--SSSEEEEEET--T-------SCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----
T ss_pred EEEcC--CCCEEEEEEC--C-------CcEEEEecCCCcceeeeEec--CCCCcEEEEEeCCCCCCCEEEEeccC-----
Confidence 44444 5667777762 2 35788888766776554321 11122223333 2 5677777643
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--C--CEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
..+.+||+.+..|..+... ........++.+ + +.+++.|+.. ..+.+||+.+.
T Consensus 79 ------g~v~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~~ 135 (379)
T 3jrp_A 79 ------GKVLIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKEN 135 (379)
T ss_dssp ------SCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCTT
T ss_pred ------CEEEEEEcCCCceeEeeee--cCCCcceEEEEeCCCCCCCEEEEecCC---------CcEEEEecCCC
Confidence 3578889988888766552 222222223333 3 5677777653 45788888765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=96.25 E-value=0.53 Score=47.09 Aligned_cols=208 Identities=10% Similarity=-0.010 Sum_probs=102.8
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~ 148 (647)
.+-+.+..+. ++.||++.-. .+.+++||+.+.....+.... + -.+++.. ++.||+..+
T Consensus 14 ~~Egp~w~~~-~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~~~----~-~~~i~~~~dG~l~v~~~------ 72 (297)
T 3g4e_A 14 CGESPVWEEV-SNSLLFVDIP---------AKKVCRWDSFTKQVQRVTMDA----P-VSSVALRQSGGYVATIG------ 72 (297)
T ss_dssp BEEEEEEETT-TTEEEEEETT---------TTEEEEEETTTCCEEEEECSS----C-EEEEEEBTTSSEEEEET------
T ss_pred cccCCeEECC-CCEEEEEECC---------CCEEEEEECCCCcEEEEeCCC----c-eEEEEECCCCCEEEEEC------
Confidence 4445555543 4778887652 247899999988765543321 1 1222332 456666531
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCC--CCCcceeEEEEECCEEEEEecccCCCC---ceeeeCcEEEEEcCCCceEE
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGC--PSPRSGHRMVLYKHKIIVFGGFYDTLR---EVRYYNDLYVFDLDQFKWQE 223 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~--P~~R~~h~~~~~~~~lyv~GG~~~~~~---~~~~~~dv~~yD~~t~~W~~ 223 (647)
+.+++||+.+.+++.+..... +..|....++--+++||+-. ...... .......+|+|++.. +...
T Consensus 73 -------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~g-~~~~ 143 (297)
T 3g4e_A 73 -------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPDH-HVKK 143 (297)
T ss_dssp -------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTTS-CEEE
T ss_pred -------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECCC-CEEE
Confidence 468999999998887754211 22222222222367777632 211100 000124688888753 3333
Q ss_pred eccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeC--CCCeEEEeecCCCCCC-Cce
Q 006384 224 IKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP--RTWEWSKVKKIGMPPG-PRA 298 (647)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~--~t~~W~~v~~~g~~P~-~R~ 298 (647)
+... ...-.+++.. +..||+...... .|++|+. .+............+. ...
T Consensus 144 ~~~~-------~~~pngi~~spdg~~lyv~~~~~~----------------~i~~~~~d~~~G~~~~~~~~~~~~~~~~~ 200 (297)
T 3g4e_A 144 YFDQ-------VDISNGLDWSLDHKIFYYIDSLSY----------------SVDAFDYDLQTGQISNRRSVYKLEKEEQI 200 (297)
T ss_dssp EEEE-------ESBEEEEEECTTSCEEEEEEGGGT----------------EEEEEEECTTTCCEEEEEEEEECCGGGCE
T ss_pred Eeec-------cccccceEEcCCCCEEEEecCCCC----------------cEEEEeccCCCCcccCcEEEEECCCCCCC
Confidence 3221 0111233433 446887765433 3777765 4444322111000111 112
Q ss_pred eeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEE
Q 006384 299 GFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 299 ~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
-.++++- ++.||+.... -+.|++||+.+.+..
T Consensus 201 p~g~~~d~~G~lwva~~~--------------~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 201 PDGMCIDAEGKLWVACYN--------------GGRVIRLDPVTGKRL 233 (297)
T ss_dssp EEEEEEBTTSCEEEEEET--------------TTEEEEECTTTCCEE
T ss_pred CCeeEECCCCCEEEEEcC--------------CCEEEEEcCCCceEE
Confidence 2344443 5677776421 134899999866543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.56 Score=49.04 Aligned_cols=188 Identities=14% Similarity=0.039 Sum_probs=99.0
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCC-CCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~-~P~~ 179 (647)
.+|.+|+.+..++.+.... .....++++.. ++.+|+.++.. ..+++||+.+.+........ ....
T Consensus 102 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~-----------~~i~~~d~~~g~~~~~~~~~~~~~~ 168 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFK--TGFQPKSVRFIDNTRLAIPLLED-----------EGMDVLDINSGQTVRLSPPEKYKKK 168 (433)
T ss_dssp CEEECCBTTCSEEEEEEEE--CSSCBCCCEESSSSEEEEEBTTS-----------SSEEEEETTTCCEEEECCCHHHHTT
T ss_pred EEEEECCCCCcceEEEEEc--CCCCceEEEEeCCCeEEEEeCCC-----------CeEEEEECCCCeEeeecCccccccc
Confidence 7888998777655443221 11111222222 67788877632 35899999988776543210 0111
Q ss_pred cceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEeccc
Q 006384 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYS 255 (647)
Q Consensus 180 R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~ 255 (647)
.....++.+ ++.+|+.|+.. ..+.+||+.+.+....-.. ....-.+++.. +..+|+.++.+
T Consensus 169 ~~~v~~~~~~~~~~~~~s~~~d---------~~v~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~ 233 (433)
T 3bws_A 169 LGFVETISIPEHNELWVSQMQA---------NAVHVFDLKTLAYKATVDL------TGKWSKILLYDPIRDLVYCSNWIS 233 (433)
T ss_dssp CCEEEEEEEGGGTEEEEEEGGG---------TEEEEEETTTCCEEEEEEC------SSSSEEEEEEETTTTEEEEEETTT
T ss_pred CCceeEEEEcCCCEEEEEECCC---------CEEEEEECCCceEEEEEcC------CCCCeeEEEEcCCCCEEEEEecCC
Confidence 112222333 67888887742 4688999987654332211 11111233333 45677766544
Q ss_pred CCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEE
Q 006384 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
+ .+++||+.+.+....-. ....-.++++. ++..+++++....... .--..|+
T Consensus 234 ~----------------~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~------~~dg~i~ 286 (433)
T 3bws_A 234 E----------------DISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQE------SGGGRLG 286 (433)
T ss_dssp T----------------EEEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTTC------SCCEEEE
T ss_pred C----------------cEEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCccc------cCCCeEE
Confidence 3 38899998876644322 12222333443 4555666554321000 0124699
Q ss_pred EEECCCCcEE
Q 006384 335 GFQLDNHRWY 344 (647)
Q Consensus 335 ~yd~~t~~W~ 344 (647)
+||+.+.+-.
T Consensus 287 ~~d~~~~~~~ 296 (433)
T 3bws_A 287 IYSMDKEKLI 296 (433)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCcEE
Confidence 9999877543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.2 Score=51.01 Aligned_cols=200 Identities=11% Similarity=0.105 Sum_probs=102.3
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--C--CEEEEEeCCcCCCCCccccccCc
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~--~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
+.+++.|+. + ..+..||+.+..|..+.... ........+.+ . +.++++|+.. ..
T Consensus 69 ~~~l~s~~~--d-------g~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d-----------~~ 126 (379)
T 3jrp_A 69 GTILASCSY--D-------GKVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSD-----------GK 126 (379)
T ss_dssp CSEEEEEET--T-------SCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----------SE
T ss_pred CCEEEEecc--C-------CEEEEEEcCCCceeEeeeec--CCCcceEEEEeCCCCCCCEEEEecCC-----------Cc
Confidence 567777762 2 36888999999877554322 11122223333 2 5677777642 45
Q ss_pred EEEEECCCCcE-EEcccCCCCCCcceeEEEEE--------------CCEEEEEecccCCCCceeeeCcEEEEEcCCCc--
Q 006384 158 FWMLDLKTNQW-EQLNLKGCPSPRSGHRMVLY--------------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-- 220 (647)
Q Consensus 158 v~~yD~~t~~W-~~~~~~~~P~~R~~h~~~~~--------------~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-- 220 (647)
+.+||+.+... ......+ ....-.+++.. ++.+++.|+.+ ..+.+||+.+..
T Consensus 127 i~v~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 127 VSVVEFKENGTTSPIIIDA--HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQT 195 (379)
T ss_dssp EEEEECCTTSCCCEEEEEC--CTTCEEEEEECCCC----------CTTCEEEEEETT---------SCEEEEEEETTTTE
T ss_pred EEEEecCCCCceeeEEecC--CCCceEEEEEcCccccccccccCCCCCCEEEEEeCC---------CeEEEEEecCCCcc
Confidence 78888876632 1111101 11111122222 36777777753 357778876543
Q ss_pred eEEeccCCCCCCCCCceeeeEEEe-C---CEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCC
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVY-Q---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPP 294 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~-~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P 294 (647)
|..+..... ....-.+++.. + +.+++.|+.++. +.+||+.+. .+...... ...
T Consensus 196 ~~~~~~~~~----h~~~v~~~~~sp~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~~~~-~~~ 254 (379)
T 3jrp_A 196 YVLESTLEG----HSDWVRDVAWSPTVLLRSYLASVSQDRT----------------CIIWTQDNEQGPWKKTLLK-EEK 254 (379)
T ss_dssp EEEEEEECC----CSSCEEEEEECCCCSSSEEEEEEETTSC----------------EEEEEESSTTSCCEEEESS-SSC
T ss_pred eeeEEEEec----ccCcEeEEEECCCCCCCCeEEEEeCCCE----------------EEEEeCCCCCccceeeeec-ccc
Confidence 544433311 11112233333 3 688888887655 666776554 22222111 001
Q ss_pred CCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECC-CCcEEEeEec
Q 006384 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELR 349 (647)
Q Consensus 295 ~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~-t~~W~~l~~~ 349 (647)
....-.++++. ++.++++|+.. ..|.+|++. ...|..+...
T Consensus 255 ~~~~v~~~~~s~~g~~l~~~~~d--------------g~i~iw~~~~~~~~~~~~~~ 297 (379)
T 3jrp_A 255 FPDVLWRASWSLSGNVLALSGGD--------------NKVTLWKENLEGKWEPAGEV 297 (379)
T ss_dssp CSSCEEEEEECSSSCCEEEEESS--------------SSEEEEEEEETTEEEEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEecCC--------------CcEEEEeCCCCCccccccce
Confidence 11122233333 56677777643 348888876 5688887764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.53 Score=49.73 Aligned_cols=185 Identities=11% Similarity=0.142 Sum_probs=100.5
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
++.+++.|+. + +.+.+||..+.+-...-.. ......++.+++.+++.|+.. ..+.+
T Consensus 142 d~~~l~~g~~--d-------g~i~iwd~~~~~~~~~~~~----h~~~v~~l~~~~~~l~sg~~d-----------g~i~v 197 (435)
T 1p22_A 142 DDQKIVSGLR--D-------NTIKIWDKNTLECKRILTG----HTGSVLCLQYDERVIITGSSD-----------STVRV 197 (435)
T ss_dssp CSSEEEEEES--S-------SCEEEEESSSCCEEEEECC----CSSCEEEEECCSSEEEEEETT-----------SCEEE
T ss_pred CCCEEEEEeC--C-------CeEEEEeCCCCeEEEEEcC----CCCcEEEEEECCCEEEEEcCC-----------CeEEE
Confidence 5667777773 2 4688899887765433221 112223344477777887753 35888
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe-ccCCCCCCCCCceee
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI-KPRFGSMWPSPRSGF 239 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v-~~~~~~~~P~~R~~~ 239 (647)
||+.+......-. .....-.++.+.+.+++.|+.+ ..+.+||+.+..-... ... .......
T Consensus 198 wd~~~~~~~~~~~----~h~~~v~~l~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~-----~~~~~~v 259 (435)
T 1p22_A 198 WDVNTGEMLNTLI----HHCEAVLHLRFNNGMMVTCSKD---------RSIAVWDMASPTDITLRRVL-----VGHRAAV 259 (435)
T ss_dssp EESSSCCEEEEEC----CCCSCEEEEECCTTEEEEEETT---------SCEEEEECSSSSCCEEEEEE-----CCCSSCE
T ss_pred EECCCCcEEEEEc----CCCCcEEEEEEcCCEEEEeeCC---------CcEEEEeCCCCCCceeeeEe-----cCCCCcE
Confidence 9998876433221 1122223444455567777653 4688888876543211 111 0111111
Q ss_pred eEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccc
Q 006384 240 QFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDME 319 (647)
Q Consensus 240 s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~ 319 (647)
..+..++.+++.|+.++. +.+||+.+..-...-.. ......++..++.+++.|+..
T Consensus 260 ~~~~~~~~~l~s~~~dg~----------------i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~~g~~d--- 315 (435)
T 1p22_A 260 NVVDFDDKYIVSASGDRT----------------IKVWNTSTCEFVRTLNG-----HKRGIACLQYRDRLVVSGSSD--- 315 (435)
T ss_dssp EEEEEETTEEEEEETTSE----------------EEEEETTTCCEEEEEEC-----CSSCEEEEEEETTEEEEEETT---
T ss_pred EEEEeCCCEEEEEeCCCe----------------EEEEECCcCcEEEEEcC-----CCCcEEEEEeCCCEEEEEeCC---
Confidence 222336666777776554 77888877643332211 111223334466777777643
Q ss_pred cCccccccccCCcEEEEECCCCc
Q 006384 320 MKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 320 ~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+.|.+||+.+..
T Consensus 316 -----------g~i~iwd~~~~~ 327 (435)
T 1p22_A 316 -----------NTIRLWDIECGA 327 (435)
T ss_dssp -----------SCEEEEETTTCC
T ss_pred -----------CeEEEEECCCCC
Confidence 458999988754
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=1.3 Score=43.45 Aligned_cols=207 Identities=10% Similarity=0.055 Sum_probs=108.3
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCC-CC-CcceeEEEEE--CCEEEEEeCCcC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS-PP-PRSAHQAVSW--KNYLYIFGGEFT 145 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~-P~-~R~~ha~v~~--~~~iyv~GG~~~ 145 (647)
.-.++++.+ ++.|||.+.. .+.+.+||+.......+..... +. ...-+.++.. ++.|||.+...
T Consensus 31 ~p~~v~~~~--~g~l~v~~~~---------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~- 98 (286)
T 1q7f_A 31 EPSGVAVNA--QNDIIVADTN---------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP- 98 (286)
T ss_dssp CEEEEEECT--TCCEEEEEGG---------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-
T ss_pred CCceEEECC--CCCEEEEECC---------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-
Confidence 334555554 5778887642 2468899988665555432110 11 1123344443 57899886421
Q ss_pred CCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
...+.+||.....-..+.. +....-+.+++. +++||+.... .+.+++||+.......+
T Consensus 99 ---------~~~i~~~d~~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~~~~~~ 157 (286)
T 1q7f_A 99 ---------THQIQIYNQYGQFVRKFGA---TILQHPRGVTVDNKGRIIVVECK---------VMRVIIFDQNGNVLHKF 157 (286)
T ss_dssp ---------GCEEEEECTTSCEEEEECT---TTCSCEEEEEECTTSCEEEEETT---------TTEEEEECTTSCEEEEE
T ss_pred ---------CCEEEEECCCCcEEEEecC---ccCCCceEEEEeCCCCEEEEECC---------CCEEEEEcCCCCEEEEe
Confidence 2468899965444333332 111122333333 5678886542 24688899765544444
Q ss_pred ccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEE
Q 006384 225 KPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (647)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~ 303 (647)
... .....-.++++. ++.|||.+.... .+++|++.......+...+.. ..-.+++
T Consensus 158 ~~~-----~~~~~p~~i~~~~~g~l~v~~~~~~----------------~i~~~~~~g~~~~~~~~~g~~---~~p~~i~ 213 (286)
T 1q7f_A 158 GCS-----KHLEFPNGVVVNDKQEIFISDNRAH----------------CVKVFNYEGQYLRQIGGEGIT---NYPIGVG 213 (286)
T ss_dssp ECT-----TTCSSEEEEEECSSSEEEEEEGGGT----------------EEEEEETTCCEEEEESCTTTS---CSEEEEE
T ss_pred CCC-----CccCCcEEEEECCCCCEEEEECCCC----------------EEEEEcCCCCEEEEEccCCcc---CCCcEEE
Confidence 321 011111233333 678888765433 388999876655444322211 1223344
Q ss_pred EE-CCeEEEecceeccccCccccccccCC-cEEEEECCCCcEEEeE
Q 006384 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLN-ELYGFQLDNHRWYPLE 347 (647)
Q Consensus 304 ~~-~~~iyifGG~~~~~~~~~~~~~~~~n-dl~~yd~~t~~W~~l~ 347 (647)
+- ++.||+.... .+ .|.+||+....-..+.
T Consensus 214 ~d~~G~l~v~~~~--------------~~~~i~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 214 INSNGEILIADNH--------------NNFNLTIFTQDGQLISALE 245 (286)
T ss_dssp ECTTCCEEEEECS--------------SSCEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEeCC--------------CCEEEEEECCCCCEEEEEc
Confidence 43 5678877642 12 6899997655444443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.5 Score=49.45 Aligned_cols=204 Identities=11% Similarity=0.036 Sum_probs=107.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCC-CCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSP-NSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~-~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
++++.| ++.+|+.++. + +.+++||+.+.+....... ..+........+.+ ++.+|+.|+..
T Consensus 127 ~~~~s~--~~~~~~~~~~--~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d----- 190 (433)
T 3bws_A 127 SVRFID--NTRLAIPLLE--D-------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA----- 190 (433)
T ss_dssp CCEESS--SSEEEEEBTT--S-------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----
T ss_pred EEEEeC--CCeEEEEeCC--C-------CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----
Confidence 455665 6788887762 1 3689999998877654321 00111112223344 67888887632
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
..+.+||+.+.+....-. .. ...-..++.. +..+|+.++.. ..+++||+.+.+.......
T Consensus 191 ------~~v~~~d~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~~~~~---------~~i~~~d~~~~~~~~~~~~ 252 (433)
T 3bws_A 191 ------NAVHVFDLKTLAYKATVD--LT-GKWSKILLYDPIRDLVYCSNWIS---------EDISVIDRKTKLEIRKTDK 252 (433)
T ss_dssp ------TEEEEEETTTCCEEEEEE--CS-SSSEEEEEEETTTTEEEEEETTT---------TEEEEEETTTTEEEEECCC
T ss_pred ------CEEEEEECCCceEEEEEc--CC-CCCeeEEEEcCCCCEEEEEecCC---------CcEEEEECCCCcEEEEecC
Confidence 468899998865433221 11 1122223333 44676666432 4689999988765433221
Q ss_pred CCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-
Q 006384 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~- 305 (647)
...-.+++.. ++..+++++..... ....-..+++||+.+.+-...... +. ....+++.
T Consensus 253 -------~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~~dg~i~~~d~~~~~~~~~~~~---~~--~~~~~~~~~ 312 (433)
T 3bws_A 253 -------IGLPRGLLLSKDGKELYIAQFSASN--------QESGGGRLGIYSMDKEKLIDTIGP---PG--NKRHIVSGN 312 (433)
T ss_dssp -------CSEEEEEEECTTSSEEEEEEEESCT--------TCSCCEEEEEEETTTTEEEEEEEE---EE--CEEEEEECS
T ss_pred -------CCCceEEEEcCCCCEEEEEECCCCc--------cccCCCeEEEEECCCCcEEeeccC---CC--CcceEEECC
Confidence 1122333333 44455555543220 000124688999987754443211 11 11223332
Q ss_pred CC-eEEEecceeccccCccccccccCCcEEEEECCCCcEE
Q 006384 306 KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 306 ~~-~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
++ .+|+.++. -+.|.+||+.+.+-.
T Consensus 313 ~g~~l~~~~~~--------------~~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 313 TENKIYVSDMC--------------CSKIEVYDLKEKKVQ 338 (433)
T ss_dssp STTEEEEEETT--------------TTEEEEEETTTTEEE
T ss_pred CCCEEEEEecC--------------CCEEEEEECCCCcEE
Confidence 33 57676543 246999999876533
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=95.90 E-value=1.4 Score=42.96 Aligned_cols=200 Identities=7% Similarity=-0.033 Sum_probs=105.2
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
-+++++.+ ++.||+.... .+.+++||+. .++..+..+. ....-+.++.. ++.||+....
T Consensus 64 ~~~i~~~~--~g~l~v~~~~---------~~~v~~~d~~-g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~------ 123 (300)
T 2qc5_A 64 VMCLIVSS--LGDIWFTENG---------ANKIGKLSKK-GGFTEYPLPQ--PDSGPYGITEGLNGDIWFTQLN------ 123 (300)
T ss_dssp EEEEEECT--TSCEEEEETT---------TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECSTTCEEEEETT------
T ss_pred ceeEEECC--CCCEEEEecC---------CCeEEEECCC-CCeEEecCCC--CCCCCccceECCCCCEEEEccC------
Confidence 34555554 5778876531 1368899988 6666554321 11223344443 5778887532
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
...+++||+. .+........ ....-+.+++- +++||+.... .+.+++||+ +.+...+....
T Consensus 124 -----~~~i~~~~~~-g~~~~~~~~~--~~~~~~~i~~d~~g~l~v~~~~---------~~~i~~~~~-~g~~~~~~~~~ 185 (300)
T 2qc5_A 124 -----GDRIGKLTAD-GTIYEYDLPN--KGSYPAFITLGSDNALWFTENQ---------NNSIGRITN-TGKLEEYPLPT 185 (300)
T ss_dssp -----TTEEEEECTT-SCEEEEECSS--TTCCEEEEEECTTSSEEEEETT---------TTEEEEECT-TCCEEEEECSS
T ss_pred -----CCeEEEECCC-CCEEEccCCC--CCCCceeEEECCCCCEEEEecC---------CCeEEEECC-CCcEEEeeCCC
Confidence 1468899987 6665443210 11222333332 5678875431 246889998 66666553220
Q ss_pred CCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-C
Q 006384 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-K 306 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~ 306 (647)
....-.+++.. ++.||+...... .+++|++ +..+...... .....-.++++- +
T Consensus 186 -----~~~~~~~i~~d~~g~l~v~~~~~~----------------~i~~~~~-~g~~~~~~~~---~~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 186 -----NAAAPVGITSGNDGALWFVEIMGN----------------KIGRITT-TGEISEYDIP---TPNARPHAITAGKN 240 (300)
T ss_dssp -----TTCCEEEEEECTTSSEEEEETTTT----------------EEEEECT-TCCEEEEECS---STTCCEEEEEECST
T ss_pred -----CCCCcceEEECCCCCEEEEccCCC----------------EEEEEcC-CCcEEEEECC---CCCCCceEEEECCC
Confidence 11112233333 567877643222 3788888 5555554321 111122333333 5
Q ss_pred CeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 307 KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 307 ~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+.||+.... .+.|++||+ +.+...+..
T Consensus 241 g~l~v~~~~--------------~~~i~~~~~-~g~~~~~~~ 267 (300)
T 2qc5_A 241 SEIWFTEWG--------------ANQIGRITN-DNTIQEYQL 267 (300)
T ss_dssp TCEEEEETT--------------TTEEEEECT-TSCEEEEEC
T ss_pred CCEEEeccC--------------CCeEEEECC-CCcEEEEEC
Confidence 677776421 256899998 456665443
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.59 Score=49.66 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=77.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECC--CCeEE-EecCCCCCCCcceeEEEEE--CCEEEEEeCCcCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTS 146 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~--~~~W~-~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~ 146 (647)
.++.+.|. +..|++.|+. + +.+.+||+. +.... .+.... .+.. ...+.+ ++.++++|+.
T Consensus 106 ~~~~~s~d-~~~l~~~~~~--d-------g~v~iwd~~~~~~~~~~~~~~~~--~~~~-v~~~~~sp~~~~l~~~~~--- 169 (450)
T 2vdu_B 106 RNLRLTSD-ESRLIACADS--D-------KSLLVFDVDKTSKNVLKLRKRFC--FSKR-PNAISIAEDDTTVIIADK--- 169 (450)
T ss_dssp EEEEECTT-SSEEEEEEGG--G-------TEEEEEEECSSSSSCEEEEEEEE--CSSC-EEEEEECTTSSEEEEEET---
T ss_pred EEEEEcCC-CCEEEEEECC--C-------CeEEEEECcCCCCceeeeeeccc--CCCC-ceEEEEcCCCCEEEEEeC---
Confidence 34455552 3455677873 2 357777876 44322 221100 1111 122333 4556666653
Q ss_pred CCCccccccCcEEEEECCCCcEEEcccCCC--CCCcceeEEEE-EC---CEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGC--PSPRSGHRMVL-YK---HKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~--P~~R~~h~~~~-~~---~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
...++.|++.+........... ..... .+++. -+ +++++.|+.+ ..+.+||+.+.+
T Consensus 170 --------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~sp~~~~~~~l~s~~~d---------~~i~vwd~~~~~ 231 (450)
T 2vdu_B 170 --------FGDVYSIDINSIPEEKFTQEPILGHVSML-TDVHLIKDSDGHQFIITSDRD---------EHIKISHYPQCF 231 (450)
T ss_dssp --------TSEEEEEETTSCCCSSCCCCCSEECSSCE-EEEEEEECTTSCEEEEEEETT---------SCEEEEEESCTT
T ss_pred --------CCcEEEEecCCcccccccceeeecccCce-EEEEEcCCCCCCcEEEEEcCC---------CcEEEEECCCCc
Confidence 1458888887654321000001 11111 12222 25 7777887753 468888888765
Q ss_pred eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (647)
......... ..+. .+++..++.+++.|+.++. |.+||+.+.+...
T Consensus 232 ~~~~~~~~h---~~~v--~~~~~sd~~~l~s~~~d~~----------------v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 232 IVDKWLFGH---KHFV--SSICCGKDYLLLSAGGDDK----------------IFAWDWKTGKNLS 276 (450)
T ss_dssp CEEEECCCC---SSCE--EEEEECSTTEEEEEESSSE----------------EEEEETTTCCEEE
T ss_pred eeeeeecCC---CCce--EEEEECCCCEEEEEeCCCe----------------EEEEECCCCcEee
Confidence 443211100 1111 1222226777778876544 7888887765433
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.29 Score=48.79 Aligned_cols=194 Identities=14% Similarity=0.132 Sum_probs=99.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeE----EEecCCCCCCCcceeEEEEE--CCEEEEEeCCcC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW----KVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFT 145 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W----~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~ 145 (647)
.++.+.| ++.+++.|+ + +.+..||+.+... ..+... ........+.+ ++.++++|+..
T Consensus 55 ~~~~~~~--~~~~l~~~~---d-------g~i~iw~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d- 118 (337)
T 1gxr_A 55 CAVTISN--PTRHVYTGG---K-------GCVKVWDISHPGNKSPVSQLDCL---NRDNYIRSCKLLPDGCTLIVGGEA- 118 (337)
T ss_dssp CEEEECS--SSSEEEEEC---B-------SEEEEEETTSTTCCSCSEEEECS---CTTSBEEEEEECTTSSEEEEEESS-
T ss_pred EEEEEec--CCcEEEEcC---C-------CeEEEEECCCCCceeeeeccccc---CCCCcEEEEEEcCCCCEEEEEcCC-
Confidence 3445555 566777776 2 3678888876532 111110 11112222333 45566666532
Q ss_pred CCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
..+.+||+.+............... -.+++.. ++.+++.|+.. ..+.+||+.+.+....
T Consensus 119 ----------~~i~~~d~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d---------g~v~~~d~~~~~~~~~ 178 (337)
T 1gxr_A 119 ----------STLSIWDLAAPTPRIKAELTSSAPA-CYALAISPDSKVCFSCCSD---------GNIAVWDLHNQTLVRQ 178 (337)
T ss_dssp ----------SEEEEEECCCC--EEEEEEECSSSC-EEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEE
T ss_pred ----------CcEEEEECCCCCcceeeecccCCCc-eEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCceeee
Confidence 4688999988875443321111111 1122222 55666677642 4588999987754433
Q ss_pred ccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEE
Q 006384 225 KPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (647)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~ 303 (647)
-.. ....-.+++.. ++.+++.|+.++. +.+||+.+..-...... ...-.+++
T Consensus 179 ~~~------~~~~i~~~~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~~~~~~-----~~~v~~~~ 231 (337)
T 1gxr_A 179 FQG------HTDGASCIDISNDGTKLWTGGLDNT----------------VRSWDLREGRQLQQHDF-----TSQIFSLG 231 (337)
T ss_dssp ECC------CSSCEEEEEECTTSSEEEEEETTSE----------------EEEEETTTTEEEEEEEC-----SSCEEEEE
T ss_pred eec------ccCceEEEEECCCCCEEEEEecCCc----------------EEEEECCCCceEeeecC-----CCceEEEE
Confidence 221 11112233333 5667777776544 88899877654433221 11122333
Q ss_pred EE-CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 304 ~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+. ++.++++|+.. ..|.+||+.+..
T Consensus 232 ~s~~~~~l~~~~~~--------------~~i~~~~~~~~~ 257 (337)
T 1gxr_A 232 YCPTGEWLAVGMES--------------SNVEVLHVNKPD 257 (337)
T ss_dssp ECTTSSEEEEEETT--------------SCEEEEETTSSC
T ss_pred ECCCCCEEEEEcCC--------------CcEEEEECCCCC
Confidence 33 56677777532 458999988765
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=95.83 E-value=0.8 Score=45.57 Aligned_cols=194 Identities=12% Similarity=0.102 Sum_probs=100.4
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~ 150 (647)
++.+.| ++.+++.|+. + ..+..|+..+......-... ......+.+ ++.+++.|+..
T Consensus 28 ~~~~s~--~~~~l~s~~~--d-------g~i~iw~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d------ 86 (312)
T 4ery_A 28 SVKFSP--NGEWLASSSA--D-------KLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSNLLVSASDD------ 86 (312)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEECC--CCCEEEEeeC--C-------CeEEEEeCCCcccchhhccC----CCceEEEEEcCCCCEEEEECCC------
Confidence 445555 5667777772 2 35778888877765443221 112222333 45677777642
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (647)
..+.+||+.+..-...-. ............-++.+++.|+.+ ..+.+||+.+.+-...-..
T Consensus 87 -----~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~--- 147 (312)
T 4ery_A 87 -----KTLKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFD---------ESVRIWDVKTGKCLKTLPA--- 147 (312)
T ss_dssp -----SEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSSSEEEEEETT---------SCEEEEETTTCCEEEEECC---
T ss_pred -----CEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCEEEEEecC---
Confidence 458889988775432211 111111111111245667777753 3588899887654322111
Q ss_pred CCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCe
Q 006384 231 MWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR 308 (647)
Q Consensus 231 ~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~ 308 (647)
....-.+++.. ++.+++.|+.++. +.+||+.+.+-...-... .... -..+++. ++.
T Consensus 148 ---~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~~wd~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~ 205 (312)
T 4ery_A 148 ---HSDPVSAVHFNRDGSLIVSSSYDGL----------------CRIWDTASGQCLKTLIDD--DNPP-VSFVKFSPNGK 205 (312)
T ss_dssp ---CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCEEEEECCS--SCCC-EEEEEECTTSS
T ss_pred ---CCCcEEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCceeeEEecc--CCCc-eEEEEECCCCC
Confidence 11111122222 5667788877655 788898776543322111 1111 1222222 566
Q ss_pred EEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 309 iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
.++.|+.. +.|.+||+.+.+
T Consensus 206 ~l~~~~~d--------------~~i~iwd~~~~~ 225 (312)
T 4ery_A 206 YILAATLD--------------NTLKLWDYSKGK 225 (312)
T ss_dssp EEEEEETT--------------TEEEEEETTTTE
T ss_pred EEEEEcCC--------------CeEEEEECCCCc
Confidence 66666532 458999987754
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=95.67 E-value=0.79 Score=45.44 Aligned_cols=135 Identities=10% Similarity=0.147 Sum_probs=67.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCC-CCcceeEEEEE-C-CEEEEEeCCcCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP-PPRSAHQAVSW-K-NYLYIFGGEFTSPN 148 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P-~~R~~ha~v~~-~-~~iyv~GG~~~~~~ 148 (647)
.++++.+ ++.||+..+.. .......+.+++||+.+.++..+..+... ....-++++.. + +.|||....
T Consensus 21 ~~~~~~~--~g~l~~~~~~~--~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~----- 91 (314)
T 1pjx_A 21 EGPVFDK--NGDFYIVAPEV--EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----- 91 (314)
T ss_dssp EEEEECT--TSCEEEEETTC--EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred cCceECC--CCCEEEEEecc--ccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence 4455554 67888872100 00001234689999988888766431000 11112333333 4 788887641
Q ss_pred CccccccCcEEEEECCCCcEEEc-ccCCCCCC-cceeEEEE-ECCEEEEEecccCCC------CceeeeCcEEEEEcCCC
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQL-NLKGCPSP-RSGHRMVL-YKHKIIVFGGFYDTL------REVRYYNDLYVFDLDQF 219 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~-~~~~~P~~-R~~h~~~~-~~~~lyv~GG~~~~~------~~~~~~~dv~~yD~~t~ 219 (647)
+.+++||+. ++...+ .......+ ..-+.++. -+++||+........ ........+++||+. .
T Consensus 92 -------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 92 -------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp -------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred -------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 358899998 777666 33111111 11223333 267888765321000 000012568999887 5
Q ss_pred ceEEe
Q 006384 220 KWQEI 224 (647)
Q Consensus 220 ~W~~v 224 (647)
+...+
T Consensus 163 ~~~~~ 167 (314)
T 1pjx_A 163 QMIQV 167 (314)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 55544
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.99 Score=52.09 Aligned_cols=186 Identities=8% Similarity=0.052 Sum_probs=102.4
Q ss_pred cEEEEECCCCeEEEecCCCCCCC-cceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPP-RSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~-R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
-+++||+.+++++.+.......+ ..-.+++.. ++.|||-.. +-+++||+.+++|..+.....+..
T Consensus 428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~ 494 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------SALVRFNPEQRSFTTIEKEKDGTP 494 (795)
T ss_dssp EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------SCEEEEETTTTEEEECCBCTTCCB
T ss_pred ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------CceeEEeCCCCeEEEccccccccc
Confidence 57899999998887754221111 112222222 466777532 348899999999988764211111
Q ss_pred c--ceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC-CCCCCCCCceeeeEEEe-CCEEEEEec
Q 006384 180 R--SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR-FGSMWPSPRSGFQFFVY-QDEVFLYGG 253 (647)
Q Consensus 180 R--~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~-~~~~~P~~R~~~s~~~~-~~~Iyv~GG 253 (647)
. ....++.. ++.|||-.. ..+++||+.+.++ .+... .....+. ..-.+++.. ++.|+|-..
T Consensus 495 ~~~~~i~~i~~d~~g~lWigt~-----------~Gl~~~~~~~~~~-~~~~~~~~~~l~~-~~i~~i~~d~~g~lWigT~ 561 (795)
T 4a2l_A 495 VVSKQITTLFRDSHKRLWIGGE-----------EGLSVFKQEGLDI-QKASILPVSNVTK-LFTNCIYEASNGIIWVGTR 561 (795)
T ss_dssp CCCCCEEEEEECTTCCEEEEES-----------SCEEEEEEETTEE-EECCCSCSCGGGG-SCEEEEEECTTSCEEEEES
T ss_pred cCCceEEEEEECCCCCEEEEeC-----------CceEEEeCCCCeE-EEecCCCCCCCCC-CeeEEEEECCCCCEEEEeC
Confidence 1 11112222 567777432 3488999988888 44321 0000111 111222222 566776432
Q ss_pred ccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCc
Q 006384 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNE 332 (647)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~nd 332 (647)
. . +++||+.+.++.........|.... .+++.- ++.|++.+. +-
T Consensus 562 -~-G----------------l~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t~----------------~G 606 (795)
T 4a2l_A 562 -E-G----------------FYCFNEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLSTN----------------RG 606 (795)
T ss_dssp -S-C----------------EEEEETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEET----------------TE
T ss_pred -C-C----------------ceeECCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEcC----------------Cc
Confidence 1 3 8899999999888754322343322 233332 466776552 33
Q ss_pred EEEEECCCCcEEEeEe
Q 006384 333 LYGFQLDNHRWYPLEL 348 (647)
Q Consensus 333 l~~yd~~t~~W~~l~~ 348 (647)
|.+||+.+.++..+..
T Consensus 607 l~~~~~~~~~~~~~~~ 622 (795)
T 4a2l_A 607 ISCFNPETEKFRNFTE 622 (795)
T ss_dssp EEEEETTTTEEEEECG
T ss_pred eEEEcCCCCcEEEcCC
Confidence 8899999988876654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.44 Score=54.98 Aligned_cols=188 Identities=11% Similarity=0.006 Sum_probs=100.6
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
-+++|++.+..+..+..........-++++.. ++.||| |.. ..-+++||+.++++..+.....+..
T Consensus 384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~-----------~~Gl~~~~~~~~~~~~~~~~~~~~~- 450 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTY-----------LGNISYYNTRLKKFQIIELEKNELL- 450 (781)
T ss_dssp CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EET-----------TEEEEEECSSSCEEEECCSTTTCCC-
T ss_pred cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Eec-----------cCCEEEEcCCCCcEEEeccCCCCCC-
Confidence 47889998877775532111111222333333 567777 321 1458899999999988764211211
Q ss_pred ceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCC
Q 006384 181 SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (647)
Q Consensus 181 ~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~ 258 (647)
.-.+++.- ++.|||-.. +-|++||+.+.+|..+........+.. .-.+++.. ++.|+| |.....
T Consensus 451 ~v~~i~~d~~g~lwigt~-----------~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~d~~g~lWi-gt~~~G- 516 (781)
T 3v9f_A 451 DVRVFYEDKNKKIWIGTH-----------AGVFVIDLASKKVIHHYDTSNSQLLEN-FVRSIAQDSEGRFWI-GTFGGG- 516 (781)
T ss_dssp CEEEEEECTTSEEEEEET-----------TEEEEEESSSSSCCEEECTTTSSCSCS-CEEEEEECTTCCEEE-EESSSC-
T ss_pred eEEEEEECCCCCEEEEEC-----------CceEEEeCCCCeEEecccCcccccccc-eeEEEEEcCCCCEEE-EEcCCC-
Confidence 12222222 567777321 458999999999987764421111111 12223332 566665 333222
Q ss_pred CCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEecceeccccCccccccccCCcE-EEE
Q 006384 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGGVVDMEMKGDVIMSLFLNEL-YGF 336 (647)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyifGG~~~~~~~~~~~~~~~~ndl-~~y 336 (647)
+++|++.+.+++........|.... .+++. .++.|+|-.. +-+ ++|
T Consensus 517 ---------------l~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~----------------~Glv~~~ 564 (781)
T 3v9f_A 517 ---------------VGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG----------------EGLVCFP 564 (781)
T ss_dssp ---------------EEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET----------------TEEEEES
T ss_pred ---------------EEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC----------------CCceEEE
Confidence 7899999999888754222232221 12222 1466666432 225 788
Q ss_pred ECCCCcEEEeEe
Q 006384 337 QLDNHRWYPLEL 348 (647)
Q Consensus 337 d~~t~~W~~l~~ 348 (647)
|+.+.++..+..
T Consensus 565 d~~~~~~~~~~~ 576 (781)
T 3v9f_A 565 SARNFDYQVFQR 576 (781)
T ss_dssp CTTTCCCEEECG
T ss_pred CCCCCcEEEccc
Confidence 888877766553
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.8 Score=44.33 Aligned_cols=194 Identities=9% Similarity=0.033 Sum_probs=99.8
Q ss_pred cceEEEEeccCCCEEEE-EcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCC
Q 006384 70 SNCSLNINPLKETELIL-YGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv-~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~ 147 (647)
..+++++.+ ++.||+ .... .+.+++|++.+.....+.... ...-++++.. ++.|||... .
T Consensus 25 ~p~~i~~~~--~g~l~v~~~~~---------~~~i~~~~~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~-~--- 86 (270)
T 1rwi_B 25 SPSGVAVDS--AGNVYVTSEGM---------YGRVVKLATGSTGTTVLPFNG---LYQPQGLAVDGAGTVYVTDF-N--- 86 (270)
T ss_dssp CEEEEEECT--TCCEEEEECSS---------SCEEEEECC-----EECCCCS---CCSCCCEEECTTCCEEEEET-T---
T ss_pred CccceEECC--CCCEEEEccCC---------CCcEEEecCCCcccceEeeCC---cCCcceeEECCCCCEEEEcC-C---
Confidence 445566665 567888 4331 246888888776655443221 1122334443 467888764 1
Q ss_pred CCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
..+++||+.+.....+...+ ...-+.+++. +++||+.... .+.+++|+..+........
T Consensus 87 --------~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~~~~~~~ 146 (270)
T 1rwi_B 87 --------NRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRG---------NNRVVKLAAGSKTQTVLPF 146 (270)
T ss_dssp --------TEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGG---------GTEEEEECTTCCSCEECCC
T ss_pred --------CEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECC---------CCEEEEEECCCceeEeecc
Confidence 46889998877655443211 1222334443 5678886542 2467888776655443321
Q ss_pred CCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE
Q 006384 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
. ....-.++++. ++.||+...... .+++|++....-...... ....-.++++-
T Consensus 147 ~------~~~~p~~i~~~~~g~l~v~~~~~~----------------~i~~~~~~~~~~~~~~~~----~~~~p~~i~~d 200 (270)
T 1rwi_B 147 T------GLNDPDGVAVDNSGNVYVTDTDNN----------------RVVKLEAESNNQVVLPFT----DITAPWGIAVD 200 (270)
T ss_dssp C------SCCSCCCEEECTTCCEEEEEGGGT----------------EEEEECTTTCCEEECCCS----SCCSEEEEEEC
T ss_pred c------cCCCceeEEEeCCCCEEEEECCCC----------------EEEEEecCCCceEeeccc----CCCCceEEEEC
Confidence 1 00111234444 567887764332 388899877654332211 11122334443
Q ss_pred -CCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 306 -~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
++.||+.... .+.|++|++.+.
T Consensus 201 ~~g~l~v~~~~--------------~~~v~~~~~~~~ 223 (270)
T 1rwi_B 201 EAGTVYVTEHN--------------TNQVVKLLAGST 223 (270)
T ss_dssp TTCCEEEEETT--------------TSCEEEECTTCS
T ss_pred CCCCEEEEECC--------------CCcEEEEcCCCC
Confidence 4577776532 245888887654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.55 E-value=1.3 Score=50.37 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=69.2
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCC---CCC---cceeEEEEECCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS---PPP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~---P~~---R~~ha~v~~~~~iyv~GG~~~~~~~~~~ 152 (647)
++.||+... .+.|+.+|..+. .|+.-..... +.. ....+.++.++.||+...
T Consensus 77 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---------- 136 (677)
T 1kb0_A 77 DGIMYVSAS----------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---------- 136 (677)
T ss_dssp TTEEEEECG----------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC----------
Confidence 788888765 247899999876 4876433210 000 112234556888888642
Q ss_pred cccCcEEEEECCCCc--EEEccc-CCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEecc
Q 006384 153 HHYKDFWMLDLKTNQ--WEQLNL-KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~-~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~ 226 (647)
-..++.+|..+++ |+.-.. ..........+.++.++.||+..+.... .....|+.||..+.+ |+.-..
T Consensus 137 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~----~~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 137 --DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY----GVRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp --TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEESS
T ss_pred --CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccccc----CCCCEEEEEECCCCcEEEEeccC
Confidence 1469999998874 776432 1001111222345568888875432111 124579999998765 876543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=95.49 E-value=0.77 Score=46.50 Aligned_cols=206 Identities=10% Similarity=0.020 Sum_probs=98.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
.++.+.| ++.+++.|+. + ..+..||+.+.++....... ........+.+ ++.++++|+..
T Consensus 56 ~~~~~~~--~~~~l~~~~~--d-------g~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d----- 117 (372)
T 1k8k_C 56 TGVDWAP--DSNRIVTCGT--D-------RNAYVWTLKGRTWKPTLVIL--RINRAARCVRWAPNEKKFAVGSGS----- 117 (372)
T ss_dssp EEEEEET--TTTEEEEEET--T-------SCEEEEEEETTEEEEEEECC--CCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred cEEEEeC--CCCEEEEEcC--C-------CeEEEEECCCCeeeeeEEee--cCCCceeEEEECCCCCEEEEEeCC-----
Confidence 3455555 5666667762 2 36888898888876543211 11112223333 45566666642
Q ss_pred ccccccCcEEEEECCCCc-EEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCC--------
Q 006384 150 ERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-------- 219 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~-W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-------- 219 (647)
..+.+||+.+.. |........+....-.+++.. ++.+++.|+.. ..+.+||+...
T Consensus 118 ------~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 118 ------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD---------FKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp ------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT---------SCEEEEECCCTTTSCCCCC
T ss_pred ------CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC---------CCEEEEEcccccccccccc
Confidence 235555555443 332222111111112222222 55677777653 35778885421
Q ss_pred --------ceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC
Q 006384 220 --------KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (647)
Q Consensus 220 --------~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~ 290 (647)
.-..+.... .....-.+++.. ++.+++.|+.++. +.+||+.+.+-...-..
T Consensus 183 ~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESS----SSCGWVHGVCFSANGSRVAWVSHDST----------------VCLADADKKMAVATLAS 242 (372)
T ss_dssp BTTBSCCCTTCEEEECC----CCSSCEEEEEECSSSSEEEEEETTTE----------------EEEEEGGGTTEEEEEEC
T ss_pred cccccccchhhheEecC----CCCCeEEEEEECCCCCEEEEEeCCCE----------------EEEEECCCCceeEEEcc
Confidence 111111110 011111222222 5556777765543 77888765543222111
Q ss_pred CCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCC--CcEEEeEec
Q 006384 291 GMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN--HRWYPLELR 349 (647)
Q Consensus 291 g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t--~~W~~l~~~ 349 (647)
+.. .-.++++. ++.+++.| . + +.+.+|++.+ +.|..+...
T Consensus 243 ---~~~-~v~~~~~~~~~~~l~~~-~-d-------------~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 243 ---ETL-PLLAVTFITESSLVAAG-H-D-------------CFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp ---SSC-CEEEEEEEETTEEEEEE-T-T-------------SSCEEEEEETTTTEEEECCCC
T ss_pred ---CCC-CeEEEEEecCCCEEEEE-e-C-------------CeEEEEEccCcCceEEEeecc
Confidence 111 12233333 56655554 2 2 4578888887 899887653
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.56 Score=47.96 Aligned_cols=189 Identities=10% Similarity=0.121 Sum_probs=96.1
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~ 148 (647)
-.++...| ++.+++.||. + ..+.+||..+..|....... .........+.+ ++.+++.|+..
T Consensus 19 v~~l~~sp--~g~~las~~~--D-------~~i~iw~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~g~~l~s~s~D---- 82 (345)
T 3fm0_A 19 CWFLAWNP--AGTLLASCGG--D-------RRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLASASFD---- 82 (345)
T ss_dssp EEEEEECT--TSSCEEEEET--T-------SCEEEEEEETTEEEEEEEEC-SSCSSCEEEEEECTTSSEEEEEETT----
T ss_pred EEEEEECC--CCCEEEEEcC--C-------CeEEEEEcCCCcceeeeeec-cccCCcEEEEEECCCCCEEEEEECC----
Confidence 34566666 6778888883 2 35778888888776332110 011112223333 46677777643
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCc-eEEec
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIK 225 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~ 225 (647)
..+.+||..+..+..+... ......-.++.+ ++.+++.|+.+ ..+.+||+.+.. +..+.
T Consensus 83 -------~~v~iw~~~~~~~~~~~~~--~~h~~~v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 83 -------ATTCIWKKNQDDFECVTTL--EGHENEVKSVAWAPSGNLLATCSRD---------KSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp -------SCEEEEEECCC-EEEEEEE--CCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEEECTTSCEEEEE
T ss_pred -------CcEEEEEccCCCeEEEEEc--cCCCCCceEEEEeCCCCEEEEEECC---------CeEEEEECCCCCCeEEEE
Confidence 3466777777666544331 111111122333 56677777753 357788876543 33332
Q ss_pred cCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE
Q 006384 226 PRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (647)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~ 304 (647)
... .....-.+++.. ++.+++.|+.++. +.+|+..+..|..+..... ....-.++++
T Consensus 145 ~~~----~h~~~v~~~~~~p~~~~l~s~s~d~~----------------i~~w~~~~~~~~~~~~~~~--h~~~v~~l~~ 202 (345)
T 3fm0_A 145 VLN----SHTQDVKHVVWHPSQELLASASYDDT----------------VKLYREEEDDWVCCATLEG--HESTVWSLAF 202 (345)
T ss_dssp EEC----CCCSCEEEEEECSSSSCEEEEETTSC----------------EEEEEEETTEEEEEEEECC--CSSCEEEEEE
T ss_pred Eec----CcCCCeEEEEECCCCCEEEEEeCCCc----------------EEEEEecCCCEEEEEEecC--CCCceEEEEE
Confidence 221 011111122222 5667778877655 6778887777765543210 1111122333
Q ss_pred E-CCeEEEecce
Q 006384 305 H-KKRALLFGGV 315 (647)
Q Consensus 305 ~-~~~iyifGG~ 315 (647)
. ++.+++.|+.
T Consensus 203 sp~g~~l~s~s~ 214 (345)
T 3fm0_A 203 DPSGQRLASCSD 214 (345)
T ss_dssp CTTSSEEEEEET
T ss_pred CCCCCEEEEEeC
Confidence 3 5667777764
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.65 Score=53.52 Aligned_cols=179 Identities=10% Similarity=0.019 Sum_probs=100.1
Q ss_pred cEEEEECCCCeEEEecCCC-CCCC-cceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccC-CCC
Q 006384 102 DLYRYDVEKQEWKVISSPN-SPPP-RSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-GCP 177 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~-~P~~-R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~-~~P 177 (647)
-+++||+.+.+|..+.... .+.+ ..-.+++.. ++.|||-.- ..-+++||+.+.++..+... ++|
T Consensus 470 Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~------------~~Gl~~~~~~~~~~~~~~~~~~l~ 537 (781)
T 3v9f_A 470 GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF------------GGGVGIYTPDMQLVRKFNQYEGFC 537 (781)
T ss_dssp EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES------------SSCEEEECTTCCEEEEECTTTTCS
T ss_pred ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc------------CCCEEEEeCCCCeEEEccCCCCCC
Confidence 5889999998887665321 1111 112222222 467777431 13488999999998887542 223
Q ss_pred CCcceeEEEE-ECCEEEEEecccCCCCceeeeCcE-EEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecc
Q 006384 178 SPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDL-YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGY 254 (647)
Q Consensus 178 ~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv-~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~ 254 (647)
..... +++. -++.||+-.. +-+ ++||+.+.++....... .+|.... .+++.. ++.|++.+.
T Consensus 538 ~~~i~-~i~~d~~g~lWi~T~-----------~Glv~~~d~~~~~~~~~~~~~--gl~~~~i-~~i~~d~~g~lW~~t~- 601 (781)
T 3v9f_A 538 SNTIN-QIYRSSKGQMWLATG-----------EGLVCFPSARNFDYQVFQRKE--GLPNTHI-RAISEDKNGNIWASTN- 601 (781)
T ss_dssp CSCEE-EEEECTTSCEEEEET-----------TEEEEESCTTTCCCEEECGGG--TCSCCCC-CEEEECSSSCEEEECS-
T ss_pred CCeeE-EEEECCCCCEEEEEC-----------CCceEEECCCCCcEEEccccC--CCCCceE-EEEEECCCCCEEEEcC-
Confidence 22222 2222 2567777432 235 88999998888775431 1232222 334443 567776542
Q ss_pred cCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEEecceeccccCccccccccCCcE
Q 006384 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (647)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyifGG~~~~~~~~~~~~~~~~ndl 333 (647)
. -+.+|++.+.++.......-.|...+...+++ ..+-.+.|||..+ +
T Consensus 602 -~----------------Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G---------------l 649 (781)
T 3v9f_A 602 -T----------------GISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSING---------------L 649 (781)
T ss_dssp -S----------------CEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTE---------------E
T ss_pred -C----------------ceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECCCc---------------e
Confidence 2 27899999999888754322344433333333 3344556676543 7
Q ss_pred EEEECCC
Q 006384 334 YGFQLDN 340 (647)
Q Consensus 334 ~~yd~~t 340 (647)
..|||..
T Consensus 650 ~~f~p~~ 656 (781)
T 3v9f_A 650 CFFNPDI 656 (781)
T ss_dssp EEECSCC
T ss_pred EEEChhh
Confidence 7787754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.53 Score=49.09 Aligned_cols=180 Identities=14% Similarity=0.063 Sum_probs=88.8
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS 181 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~ 181 (647)
.+..||+.+.+....-.. .......+.+++.+++.|+.. ..+.+||+.+..-......+ .. ..
T Consensus 157 ~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~-~~-~~ 219 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMAG----HQARVGCLSWNRHVLSSGSRS-----------GAIHHHDVRIANHQIGTLQG-HS-SE 219 (401)
T ss_dssp CEEEEETTTCCEEEEECC----CSSCEEEEEEETTEEEEEETT-----------SEEEEEETTSSSCEEEEEEC-CS-SC
T ss_pred eEEEEECcCCeEEEEecC----CCCceEEEEECCCEEEEEcCC-----------CCEEEEecccCcceeeEEcC-CC-CC
Confidence 678888887654432221 112222334455666777642 46888898743321111111 11 11
Q ss_pred eeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEec--ccC
Q 006384 182 GHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGG--YSK 256 (647)
Q Consensus 182 ~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG--~~~ 256 (647)
-.+++.. ++.+++.|+.+ ..+.+||+.+..-...-.. ....-.+++.. +..+++.|| .++
T Consensus 220 v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 220 VCGLAWRSDGLQLASGGND---------NVVQIWDARSSIPKFTKTN------HNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp EEEEEECTTSSEEEEEETT---------SCEEEEETTCSSEEEEECC------CSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred eeEEEEcCCCCEEEEEeCC---------CeEEEccCCCCCccEEecC------CcceEEEEEECCCCCCEEEEecCCCCC
Confidence 1122222 56677777753 4688999887543322111 11111233333 456777775 332
Q ss_pred CCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCe-EEEecceeccccCccccccccCCcEE
Q 006384 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~-iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
.+.+||+.+..-...-.. ...-.+++.. ++. +++.+|.. -+.|.
T Consensus 285 ----------------~i~i~d~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~-------------dg~i~ 330 (401)
T 4aez_A 285 ----------------QIHFWNAATGARVNTVDA-----GSQVTSLIWSPHSKEIMSTHGFP-------------DNNLS 330 (401)
T ss_dssp ----------------EEEEEETTTCCEEEEEEC-----SSCEEEEEECSSSSEEEEEECTT-------------TCEEE
T ss_pred ----------------EEEEEECCCCCEEEEEeC-----CCcEEEEEECCCCCeEEEEeecC-------------CCcEE
Confidence 388889876654333221 1112223332 344 44443432 24689
Q ss_pred EEECCCCcEEEeE
Q 006384 335 GFQLDNHRWYPLE 347 (647)
Q Consensus 335 ~yd~~t~~W~~l~ 347 (647)
+||+.+.....+.
T Consensus 331 v~~~~~~~~~~~~ 343 (401)
T 4aez_A 331 IWSYSSSGLTKQV 343 (401)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEecCCccceeEE
Confidence 9998887665543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.59 Score=48.08 Aligned_cols=197 Identities=11% Similarity=0.019 Sum_probs=102.3
Q ss_pred ceEEEEeccCCC-EEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEEC--CEEEEEeCCcCCC
Q 006384 71 NCSLNINPLKET-ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSP 147 (647)
Q Consensus 71 ~~s~~~~~~~~~-~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~--~~iyv~GG~~~~~ 147 (647)
-.++...| ++ .+++.|+. + ..+.+||+.+.......... .....-.+++... +.+++.|+..
T Consensus 76 v~~~~~~~--~~~~~l~s~~~--d-------g~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d--- 140 (383)
T 3ei3_B 76 VTSLEWHP--THPTTVAVGSK--G-------GDIILWDYDVQNKTSFIQGM-GPGDAITGMKFNQFNTNQLFVSSIR--- 140 (383)
T ss_dssp EEEEEECS--SCTTEEEEEEB--T-------SCEEEEETTSTTCEEEECCC-STTCBEEEEEEETTEEEEEEEEETT---
T ss_pred EEEEEECC--CCCCEEEEEcC--C-------CeEEEEeCCCcccceeeecC-CcCCceeEEEeCCCCCCEEEEEeCC---
Confidence 34455555 44 67777773 2 36889999887766543211 1112222333333 3666666542
Q ss_pred CCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
..+.+||+.+.....+...... ...-.+++.. ++.+++.|+.. ..+.+||+....-..+..
T Consensus 141 --------~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~ 202 (383)
T 3ei3_B 141 --------GATTLRDFSGSVIQVFAKTDSW-DYWYCCVDVSVSRQMLATGDST---------GRLLLLGLDGHEIFKEKL 202 (383)
T ss_dssp --------TEEEEEETTSCEEEEEECCCCS-SCCEEEEEEETTTTEEEEEETT---------SEEEEEETTSCEEEEEEC
T ss_pred --------CEEEEEECCCCceEEEeccCCC-CCCeEEEEECCCCCEEEEECCC---------CCEEEEECCCCEEEEecc
Confidence 4588899987766655441111 1111222222 55666777643 468888885443333322
Q ss_pred CCCCCCCCCceeeeEEEe-CCE-EEEEecccCCCCCcccCCCCCceeeeEEEEeCCC----CeEEEeecCCCCCCCceee
Q 006384 227 RFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT----WEWSKVKKIGMPPGPRAGF 300 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t----~~W~~v~~~g~~P~~R~~~ 300 (647)
. ...-.+++.. ++. +++.|+.++. +.+||+.+ ........ ....-.
T Consensus 203 h-------~~~v~~~~~~~~~~~~l~s~~~d~~----------------i~iwd~~~~~~~~~~~~~~~-----~~~~v~ 254 (383)
T 3ei3_B 203 H-------KAKVTHAEFNPRCDWLMATSSVDAT----------------VKLWDLRNIKDKNSYIAEMP-----HEKPVN 254 (383)
T ss_dssp S-------SSCEEEEEECSSCTTEEEEEETTSE----------------EEEEEGGGCCSTTCEEEEEE-----CSSCEE
T ss_pred C-------CCcEEEEEECCCCCCEEEEEeCCCE----------------EEEEeCCCCCcccceEEEec-----CCCceE
Confidence 1 1112223333 344 7778876654 77888765 33322211 111122
Q ss_pred EEEEE--CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 301 SMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 301 s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
++++. ++.+++.|+.. +.|.+||+.+..
T Consensus 255 ~~~~s~~~~~~l~~~~~d--------------~~i~iwd~~~~~ 284 (383)
T 3ei3_B 255 AAYFNPTDSTKLLTTDQR--------------NEIRVYSSYDWS 284 (383)
T ss_dssp EEEECTTTSCEEEEEESS--------------SEEEEEETTBTT
T ss_pred EEEEcCCCCCEEEEEcCC--------------CcEEEEECCCCc
Confidence 23332 45677777642 458999987653
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.40 E-value=2.7 Score=42.71 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=89.1
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
.+.+|++|- . .-+++-.-...+|+.+.....+......++...++.+|+.|-. ..+++
T Consensus 46 ~~~~~~~G~---~-------g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~------------g~i~~ 103 (327)
T 2xbg_A 46 RHHGWLVGV---N-------ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP------------PIMLH 103 (327)
T ss_dssp SSCEEEEET---T-------TEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET------------TEEEE
T ss_pred CCcEEEEcC---C-------CeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC------------CeEEE
Confidence 467888653 1 1344443334689988643211122334444457788887521 23444
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceee
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF 239 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~ 239 (647)
-.=.-.+|+.+.... +.+-..+.++. -++.+|+.|.. ..+++-.=.-..|+.+... .+...+
T Consensus 104 S~DgG~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~----------g~v~~S~DgG~tW~~~~~~------~~~~~~ 166 (327)
T 2xbg_A 104 TTDGGQSWSQIPLDP-KLPGSPRLIKALGNGSAEMITNV----------GAIYRTKDSGKNWQALVQE------AIGVMR 166 (327)
T ss_dssp ESSTTSSCEECCCCT-TCSSCEEEEEEEETTEEEEEETT----------CCEEEESSTTSSEEEEECS------CCCCEE
T ss_pred ECCCCCCceECcccc-CCCCCeEEEEEECCCCEEEEeCC----------ccEEEEcCCCCCCEEeecC------CCcceE
Confidence 222246899987521 11222233333 46788887742 1233332234679998653 122334
Q ss_pred eEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEE-eCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecc
Q 006384 240 QFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL-DPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGG 314 (647)
Q Consensus 240 s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y-d~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG 314 (647)
.++.. ++.+|++|- .+. +++- |....+|+.+.. +.+...+.+++. ++.+|+++.
T Consensus 167 ~~~~~~~~~~~~~g~-~G~----------------~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~ 223 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSS-RGS----------------FYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVN 223 (327)
T ss_dssp EEEECTTSCEEEEET-TSS----------------EEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEET
T ss_pred EEEEcCCCcEEEEEC-CCc----------------EEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEeC
Confidence 44444 556666552 222 4443 333678999853 233444455543 567777653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.032 Score=57.60 Aligned_cols=146 Identities=12% Similarity=0.166 Sum_probs=69.1
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCcc
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~ 151 (647)
+.+.| ++.+++.|+. + +.+.+||+.+..|..+.... ........+.+ ++.+++.|+..
T Consensus 17 ~~~s~--~g~~l~~~~~--d-------~~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~d------- 76 (377)
T 3dwl_C 17 HAFNS--QRTEFVTTTA--T-------NQVELYEQDGNGWKHARTFS--DHDKIVTCVDWAPKSNRIVTCSQD------- 76 (377)
T ss_dssp CEECS--SSSEEECCCS--S-------SCBCEEEEETTEEEECCCBC--CCSSCEEEEEECTTTCCEEEEETT-------
T ss_pred EEECC--CCCEEEEecC--C-------CEEEEEEccCCceEEEEEEe--cCCceEEEEEEeCCCCEEEEEeCC-------
Confidence 34445 5677777773 2 35778888888887765432 11222233333 45677777643
Q ss_pred ccccCcEEEEECCCCc-EEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCc-eEEeccC
Q 006384 152 FHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEIKPR 227 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~-W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-W~~v~~~ 227 (647)
..+.+||+.+.. |..... .........++.+ ++.+++.|+.. ..+.+||+.+.. |..+...
T Consensus 77 ----~~v~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~ 141 (377)
T 3dwl_C 77 ----RNAYVYEKRPDGTWKQTLV--LLRLNRAATFVRWSPNEDKFAVGSGA---------RVISVCYFEQENDWWVSKHL 141 (377)
T ss_dssp ----SSEEEC------CCCCEEE--CCCCSSCEEEEECCTTSSCCEEEESS---------SCEEECCC-----CCCCEEE
T ss_pred ----CeEEEEEcCCCCceeeeeE--ecccCCceEEEEECCCCCEEEEEecC---------CeEEEEEECCcccceeeeEe
Confidence 357888887766 433322 1111111222333 45666777653 357778877654 3322222
Q ss_pred CCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
.. +....-.+++.. ++.+++.|+.++.
T Consensus 142 ~~---~h~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 142 KR---PLRSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp CS---SCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred ec---ccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence 10 112222233333 5667788877654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.81 Score=47.11 Aligned_cols=132 Identities=5% Similarity=-0.054 Sum_probs=67.3
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+.+||+.+..-...-. ... ..-.+++.. ++.+++.|+.. ..+.+||+.+.+....-.. .
T Consensus 227 g~i~~~d~~~~~~~~~~~--~~~-~~i~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~------~ 288 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLI--GHH-GPISVLEFNDTNKLLLSASDD---------GTLRIWHGGNGNSQNCFYG------H 288 (425)
T ss_dssp GCEEEEETTCSSCSEEEC--CCS-SCEEEEEEETTTTEEEEEETT---------SCEEEECSSSBSCSEEECC------C
T ss_pred CeEEEEEcCCCceeeeec--cCC-CceEEEEECCCCCEEEEEcCC---------CEEEEEECCCCccceEecC------C
Confidence 468899988764221111 111 111223332 55566666642 3588888877543322211 1
Q ss_pred CceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEe
Q 006384 235 PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLF 312 (647)
Q Consensus 235 ~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyif 312 (647)
...-.+++.. ++ +++.|+.++. +.+||+.+..-...... ....-.++++. ++.++++
T Consensus 289 ~~~i~~~~~~~~~-~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 289 SQSIVSASWVGDD-KVISCSMDGS----------------VRLWSLKQNTLLALSIV----DGVPIFAGRISQDGQKYAV 347 (425)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSE----------------EEEEETTTTEEEEEEEC----TTCCEEEEEECTTSSEEEE
T ss_pred CccEEEEEECCCC-EEEEEeCCCc----------------EEEEECCCCcEeEeccc----CCccEEEEEEcCCCCEEEE
Confidence 1122333444 44 7777776544 88899877654433221 11112233333 5667777
Q ss_pred cceeccccCccccccccCCcEEEEECCC
Q 006384 313 GGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
|+.. ..|.+||+.+
T Consensus 348 ~~~d--------------g~i~i~~~~~ 361 (425)
T 1r5m_A 348 AFMD--------------GQVNVYDLKK 361 (425)
T ss_dssp EETT--------------SCEEEEECHH
T ss_pred EECC--------------CeEEEEECCC
Confidence 7642 3588888764
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.20 E-value=2.3 Score=44.77 Aligned_cols=154 Identities=11% Similarity=0.056 Sum_probs=77.0
Q ss_pred ECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEE
Q 006384 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 133 ~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
+++..++.|+.. ..+.+||+.+..-...-. .......++.+++.+++.|+.+ ..+.
T Consensus 287 ~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~l~~~~~d---------g~i~ 342 (445)
T 2ovr_B 287 FDGIHVVSGSLD-----------TSIRVWDVETGNCIHTLT----GHQSLTSGMELKDNILVSGNAD---------STVK 342 (445)
T ss_dssp ECSSEEEEEETT-----------SCEEEEETTTCCEEEEEC----CCCSCEEEEEEETTEEEEEETT---------SCEE
T ss_pred ECCCEEEEEeCC-----------CeEEEEECCCCCEEEEEc----CCcccEEEEEEeCCEEEEEeCC---------CeEE
Confidence 355555666542 457888988765432211 1111222333445566666642 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEee-cCC
Q 006384 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK-KIG 291 (647)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~-~~g 291 (647)
+||+.+.+-...-..+ ......-..+.+++.+++.|+.++. +.+||+.+.+....- ...
T Consensus 343 vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~s~~~dg~----------------v~iwd~~~~~~~~~~~~~~ 402 (445)
T 2ovr_B 343 IWDIKTGQCLQTLQGP----NKHQSAVTCLQFNKNFVITSSDDGT----------------VKLWDLKTGEFIRNLVTLE 402 (445)
T ss_dssp EEETTTCCEEEEECST----TSCSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEEEEEEECT
T ss_pred EEECCCCcEEEEEccC----CCCCCCEEEEEECCCEEEEEeCCCe----------------EEEEECCCCceeeeeeccc
Confidence 8998776543222110 0011112233346677788877654 788998877654432 110
Q ss_pred CCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 292 MPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 292 ~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
..+..-.-.++++. ++.++++|+.++ .....|++||...
T Consensus 403 ~~~~~~~v~~~~~s~~~~~la~~~~dg----------~~~~~l~v~df~~ 442 (445)
T 2ovr_B 403 SGGSGGVVWRIRASNTKLVCAVGSRNG----------TEETKLLVLDFDV 442 (445)
T ss_dssp TGGGTCEEEEEEECSSEEEEEEECSSS----------SSCCEEEEEECCC
T ss_pred cCCCCceEEEEEecCCEEEEEEcccCC----------CCccEEEEEECCC
Confidence 00111112233333 455666666543 1234588888764
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=1.9 Score=49.74 Aligned_cols=141 Identities=14% Similarity=0.193 Sum_probs=79.6
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcc-eeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~-~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
-+++||+.+.++..+..... .+.. -.+++.. ++.|||... +.+++||..++++..+.. +.+..
T Consensus 108 Gl~~yd~~~~~f~~~~~~~~-~~~~~i~~i~~d~~g~lwi~t~-------------~gl~~~~~~~~~~~~~~~-~~~~~ 172 (795)
T 4a2l_A 108 GLSRYDEEKDIFQNFFYEKN-GKHLQVNGIEEISPEQLLISTP-------------EGLIMFDIKESKFIDDSF-STAMH 172 (795)
T ss_dssp CEEEEETTTTEEEEECCEET-TEECCCCEEEEEETTEEEEEET-------------TEEEEEETTTTEEECSSS-CHHHH
T ss_pred chheeCCCCCeEEecccccc-CCCceEEEEEECCCCCEEEEEC-------------CceEEEECCCCEEEeccC-CCCCC
Confidence 47999999998887653211 1111 2223333 678887542 358899999888776543 11111
Q ss_pred cceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 180 RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 180 R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
..-.+++. -++.|||. .. ...+++||+.+.++..+... +....-.+++.. ++.|+|.. ...
T Consensus 173 ~~i~~i~~d~~g~lwig-t~---------~~Gl~~~~~~~~~~~~~~~~-----~~~~~i~~i~~d~~g~lwigt-~~~- 235 (795)
T 4a2l_A 173 KTIASTLYRQGDQIYIG-TS---------TDGLYTYSITQKTFEKVIPI-----LGTKQIQAILQQSPTRIWVAT-EGA- 235 (795)
T ss_dssp TCCEEEEEEETTEEEEE-ES---------SSCEEEEETTTCCEEECC---------CCCEEEEEEEETTEEEEEE-BSS-
T ss_pred cceEEEEECCCCCEEEE-EC---------CCCEEEEeCCCCeEEEecCC-----CCCCeeEEEEEcCCCCEEEEE-CCC-
Confidence 10112222 37888883 21 13588999999988876432 111112223222 66777632 222
Q ss_pred CCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
-+++||+.+.++.....
T Consensus 236 ---------------Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 236 ---------------GLFLINPKTKEIKNYLH 252 (795)
T ss_dssp ---------------CEEEEETTTTEEEEECC
T ss_pred ---------------CeEEEeCCCCeEEEeec
Confidence 28899999988887754
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=1.2 Score=49.59 Aligned_cols=120 Identities=11% Similarity=0.099 Sum_probs=67.5
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEEC-CCC--eEEEecCCCC---CCC---cceeEEEEECCEEEEEeCCcCCCCCcc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDV-EKQ--EWKVISSPNS---PPP---RSAHQAVSWKNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~-~~~--~W~~l~s~~~---P~~---R~~ha~v~~~~~iyv~GG~~~~~~~~~ 151 (647)
++.||+.... .+.|+++|. .+. .|+.-..... +.+ ....+.++.++.||+...
T Consensus 62 ~g~vyv~~~~---------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------- 123 (571)
T 2ad6_A 62 GDMMYVHSAF---------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--------- 123 (571)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred CCEEEEEeCC---------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---------
Confidence 7889987651 247999998 665 5886432210 000 011234566888888743
Q ss_pred ccccCcEEEEECCCC--cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEec
Q 006384 152 FHHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~--~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (647)
-..++.+|..++ .|+.-............+.++.++.||+-.+.... ..-..|+.||+.+.+ |+.-.
T Consensus 124 ---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 124 ---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL----GVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGG----TCCCEEEEEETTTCCEEEEEES
T ss_pred ---CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCcc----CCCCEEEEEECCCCcEEEEEcc
Confidence 146899999887 48754221000001122334568888875432110 013578999998754 87543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=95.14 E-value=1.7 Score=43.21 Aligned_cols=118 Identities=8% Similarity=0.052 Sum_probs=55.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECC--CCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~--~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~ 148 (647)
.+++.|. +..||+.+.. . +.+.+|++. +.+++.+.....+. .-..++.. +..||+.+..
T Consensus 42 ~~~~spd-g~~l~~~~~~---~------~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~----- 104 (343)
T 1ri6_A 42 PMVVSPD-KRYLYVGVRP---E------FRVLAYRIAPDDGALTFAAESALPG--SLTHISTDHQGQFVFVGSYN----- 104 (343)
T ss_dssp CEEECTT-SSEEEEEETT---T------TEEEEEEECTTTCCEEEEEEEECSS--CCSEEEECTTSSEEEEEETT-----
T ss_pred eEEECCC-CCEEEEeecC---C------CeEEEEEecCCCCceeeccccccCC--CCcEEEEcCCCCEEEEEecC-----
Confidence 3555552 3445555441 1 356676766 77777554321111 12222322 3456666532
Q ss_pred CccccccCcEEEEECCCC-cEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCC-CceEEe
Q 006384 149 QERFHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEI 224 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~-~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~v 224 (647)
-..+.+||+... ....+.. .+....-+.+++. +..||+.+.. -+.+.+||+.+ .+...+
T Consensus 105 ------~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 105 ------AGNVSVTRLEDGLPVGVVDV--VEGLDGCHSANISPDNRTLWVPALK---------QDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp ------TTEEEEEEEETTEEEEEEEE--ECCCTTBCCCEECTTSSEEEEEEGG---------GTEEEEEEECTTSCEEEE
T ss_pred ------CCeEEEEECCCCcccccccc--ccCCCCceEEEECCCCCEEEEecCC---------CCEEEEEEecCCCceeee
Confidence 135777777322 2222222 1111122233333 3467665532 24688999887 666543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.13 E-value=2.1 Score=42.86 Aligned_cols=206 Identities=6% Similarity=-0.032 Sum_probs=98.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
.++++.| ++.+++.|+. + ..+.+||+.+.+-...-.. .......+.+ ++.+++.|+..
T Consensus 36 ~~~~~s~--~~~~l~~~~~--d-------g~i~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~~~d----- 95 (369)
T 3zwl_B 36 TQVKYNK--EGDLLFSCSK--D-------SSASVWYSLNGERLGTLDG----HTGTIWSIDVDCFTKYCVTGSAD----- 95 (369)
T ss_dssp EEEEECT--TSCEEEEEES--S-------SCEEEEETTTCCEEEEECC----CSSCEEEEEECTTSSEEEEEETT-----
T ss_pred EEEEEcC--CCCEEEEEeC--C-------CEEEEEeCCCchhhhhhhh----cCCcEEEEEEcCCCCEEEEEeCC-----
Confidence 3445555 5667777762 2 3688899887654432211 1112222333 45566666642
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCc----eEEe
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK----WQEI 224 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~----W~~v 224 (647)
..+.+||+.+......-. .+ ..-.+++.. ++.+++.++..... ....+.+||+.+.. +...
T Consensus 96 ------g~i~iwd~~~~~~~~~~~--~~--~~v~~~~~~~~~~~l~~~~~~~~~----~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 96 ------YSIKLWDVSNGQCVATWK--SP--VPVKRVEFSPCGNYFLAILDNVMK----NPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp ------TEEEEEETTTCCEEEEEE--CS--SCEEEEEECTTSSEEEEEECCBTT----BCCEEEEEEEEECTTTCCEEEE
T ss_pred ------CeEEEEECCCCcEEEEee--cC--CCeEEEEEccCCCEEEEecCCccC----CCCEEEEEEecCCccceeeccc
Confidence 468899998876544332 11 111222222 45555555532111 12457777765432 2211
Q ss_pred ccCCCCCC--CCCc-eeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC-CeEEEeecCCCCCCCcee
Q 006384 225 KPRFGSMW--PSPR-SGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVKKIGMPPGPRAG 299 (647)
Q Consensus 225 ~~~~~~~~--P~~R-~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~v~~~g~~P~~R~~ 299 (647)
...+.... .... ...+++.. ++.+++.|+.++. +.+||+.+ ..-...-.. ....-
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~----~~~~v 221 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK----------------ISKYDVSNNYEYVDSIDL----HEKSI 221 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE----------------EEEEETTTTTEEEEEEEC----CSSCE
T ss_pred ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE----------------EEEEECCCCcEeEEEEec----CCCce
Confidence 11100000 0000 11122222 5566777766544 88899876 333222211 11112
Q ss_pred eEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 300 FSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 300 ~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
.++++. ++.+++.|+.. ..|.+||+.+.....
T Consensus 222 ~~~~~~~~~~~l~~~~~d--------------~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRD--------------TNSFLVDVSTLQVLK 254 (369)
T ss_dssp EEEEECTTSSEEEEEETT--------------SEEEEEETTTCCEEE
T ss_pred eEEEECCCCCEEEEecCC--------------ceEEEEECCCCceee
Confidence 233333 56666766532 458999988765443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=1.1 Score=50.48 Aligned_cols=193 Identities=8% Similarity=0.002 Sum_probs=99.1
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCC-cEEEcccCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGCP 177 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~-~W~~~~~~~~P 177 (647)
..+++||+.+.+-..+.... ........+.+ +++.++++...... ....++++|+.+. .+..+.....+
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~------~~~~v~~~d~~~g~~~~~~~~~~~~ 306 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGE--PKEKFLTNLSWSPDENILYVAEVNRAQ------NECKVNAYDAETGRFVRTLFVETDK 306 (706)
T ss_dssp EEEEEEETTTTEEEECCCCS--CTTCEEEEEEECTTSSEEEEEEECTTS------CEEEEEEEETTTCCEEEEEEEEECS
T ss_pred eEEEEEECCCCceEeeccCC--CCceeEeeEEEECCCCEEEEEEeCCCC------CeeEEEEEECCCCceeeEEEEccCC
Confidence 57999999998876664321 11122233333 44433443322211 1357999999998 66665431111
Q ss_pred CCc--ceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEE
Q 006384 178 SPR--SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLY 251 (647)
Q Consensus 178 ~~R--~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~ 251 (647)
... .......- ++++++.+...+ ...+|.++........+... ...... .++.. +..||+.
T Consensus 307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g-------~~~l~~~~~~~~~~~~l~~~-----~~~v~~-~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNNQFIWQSRRDG-------WNHLYLYDTTGRLIRQVTKG-----EWEVTN-FAGFDPKGTRLYFE 373 (706)
T ss_dssp SCCCCCSCCEECTTCSSEEEEEECTTS-------SCEEEEEETTSCEEEECCCS-----SSCEEE-EEEECTTSSEEEEE
T ss_pred CeECccCCceeecCCCCEEEEEEccCC-------ccEEEEEECCCCEEEecCCC-----CeEEEe-eeEEcCCCCEEEEE
Confidence 100 11112222 667665554322 35688888776666665432 111211 11222 4456665
Q ss_pred ecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccC
Q 006384 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFL 330 (647)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ 330 (647)
+.... .....+|.+|+.+.....+.. .. ..+++++- +++.+++..... ...
T Consensus 374 ~~~~~------------~~~~~l~~~d~~~~~~~~l~~-----~~-~~~~~~~spdg~~l~~~~~~~----------~~p 425 (706)
T 2z3z_A 374 STEAS------------PLERHFYCIDIKGGKTKDLTP-----ES-GMHRTQLSPDGSAIIDIFQSP----------TVP 425 (706)
T ss_dssp ESSSC------------TTCBEEEEEETTCCCCEESCC-----SS-SEEEEEECTTSSEEEEEEECS----------SCS
T ss_pred ecCCC------------CceEEEEEEEcCCCCceeccC-----CC-ceEEEEECCCCCEEEEEecCC----------CCC
Confidence 54322 122458999988776555532 11 12333333 566666654322 123
Q ss_pred CcEEEEECCCCc
Q 006384 331 NELYGFQLDNHR 342 (647)
Q Consensus 331 ndl~~yd~~t~~ 342 (647)
..++++|+.+.+
T Consensus 426 ~~i~l~d~~~~~ 437 (706)
T 2z3z_A 426 RKVTVTNIGKGS 437 (706)
T ss_dssp CEEEEEESSSCE
T ss_pred cEEEEEECCCCe
Confidence 569999998876
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=95.08 E-value=1.1 Score=46.60 Aligned_cols=209 Identities=13% Similarity=0.152 Sum_probs=101.2
Q ss_pred EEEEeccCCC-EEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 73 SLNINPLKET-ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 73 s~~~~~~~~~-~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
++...| ++ .+++.|+. + +.+.+||+.+.+....-... .... ....+.+ ++.+++.|+..
T Consensus 136 ~~~~~p--~~~~~l~s~~~--d-------g~i~iwd~~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~~l~~~~~d----- 197 (402)
T 2aq5_A 136 IVAWHP--TAQNVLLSAGC--D-------NVILVWDVGTGAAVLTLGPD-VHPD-TIYSVDWSRDGALICTSCRD----- 197 (402)
T ss_dssp EEEECS--SBTTEEEEEET--T-------SCEEEEETTTTEEEEEECTT-TCCS-CEEEEEECTTSSCEEEEETT-----
T ss_pred EEEECc--CCCCEEEEEcC--C-------CEEEEEECCCCCccEEEecC-CCCC-ceEEEEECCCCCEEEEEecC-----
Confidence 344554 33 46666662 2 36889999988765332100 0111 2222333 46666676642
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCce-EEeccCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRF 228 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W-~~v~~~~ 228 (647)
..+.+||+.+..-...-..+....+....+..-++.+++.|.. .. .-..+.+||+.+..- ......
T Consensus 198 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~-----~d~~i~iwd~~~~~~~~~~~~~- 264 (402)
T 2aq5_A 198 ------KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RM-----SERQVALWDTKHLEEPLSLQEL- 264 (402)
T ss_dssp ------SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TT-----CCEEEEEEETTBCSSCSEEEEC-
T ss_pred ------CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CC-----CCceEEEEcCccccCCceEEec-
Confidence 4688999988764433211111122222222236677776621 10 125688899876442 111111
Q ss_pred CCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe--EEEeecCCCCCCCceeeEEEE
Q 006384 229 GSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCV 304 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~v~~~g~~P~~R~~~s~~~ 304 (647)
.....-.+++.. +..||+.|+.++. +.+|++.+.. ...+.... ....-.++++
T Consensus 265 ----~~~~~v~~~~~s~~~~~l~~~g~~dg~----------------i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~ 321 (402)
T 2aq5_A 265 ----DTSSGVLLPFFDPDTNIVYLCGKGDSS----------------IRYFEITSEAPFLHYLSMFS---SKESQRGMGY 321 (402)
T ss_dssp ----CCCSSCEEEEEETTTTEEEEEETTCSC----------------EEEEEECSSTTCEEEEEEEC---CSSCCSEEEE
T ss_pred ----cCCCceeEEEEcCCCCEEEEEEcCCCe----------------EEEEEecCCCcceEeecccc---cCCcccceEE
Confidence 111112223333 4566667765544 6777776554 33443221 1111123344
Q ss_pred ECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEecC
Q 006384 305 HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRK 350 (647)
Q Consensus 305 ~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~ 350 (647)
..+..+++.+. ..+.+|++.++....+....
T Consensus 322 sp~~~~~~s~~---------------~~~~~~~l~~~~~~~i~~~~ 352 (402)
T 2aq5_A 322 MPKRGLEVNKC---------------EIARFYKLHERKCEPIAMTV 352 (402)
T ss_dssp CCGGGSCGGGT---------------EEEEEEEEETTEEEEEEEEC
T ss_pred ecccccceecc---------------eeEEEEEcCCCcEEEEEEEc
Confidence 43333333321 24778888888777766544
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.05 E-value=2.4 Score=43.39 Aligned_cols=194 Identities=9% Similarity=-0.034 Sum_probs=96.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
.++.+.| ++.++++|+. + ..+..||........+... ...-.+++.. ++..++.|+..
T Consensus 112 ~~~~~s~--~~~~l~~~~~--d-------g~i~i~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d------ 170 (425)
T 1r5m_A 112 TCLAWSH--DGNSIVTGVE--N-------GELRLWNKTGALLNVLNFH----RAPIVSVKWNKDGTHIISMDVE------ 170 (425)
T ss_dssp EEEEECT--TSSEEEEEET--T-------SCEEEEETTSCEEEEECCC----CSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEEEcC--CCCEEEEEeC--C-------CeEEEEeCCCCeeeeccCC----CccEEEEEECCCCCEEEEEecC------
Confidence 3444555 5667777772 2 3577888555544444321 1112222222 45555566532
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCc--------------ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEc
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPR--------------SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R--------------~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~ 216 (647)
..+.+||+.+......-. .+... ...+++...+..+++|+.. ..+.+||+
T Consensus 171 -----~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~i~~~d~ 234 (425)
T 1r5m_A 171 -----NVTILWNVISGTVMQHFE--LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK---------GAIFVYQI 234 (425)
T ss_dssp -----CCEEEEETTTTEEEEEEC--CC---------------CCCBSCCEEEETTEEEEECGG---------GCEEEEET
T ss_pred -----CeEEEEECCCCcEEEEee--ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC---------CeEEEEEc
Confidence 457888988776443322 11111 0222333334446666643 46889998
Q ss_pred CCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCC
Q 006384 217 DQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG 295 (647)
Q Consensus 217 ~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~ 295 (647)
.+.+-...-.. ....-.+++.. ++.+++.|+.++. +.+||+.+......-. ..
T Consensus 235 ~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~----~~ 288 (425)
T 1r5m_A 235 TEKTPTGKLIG------HHGPISVLEFNDTNKLLLSASDDGT----------------LRIWHGGNGNSQNCFY----GH 288 (425)
T ss_dssp TCSSCSEEECC------CSSCEEEEEEETTTTEEEEEETTSC----------------EEEECSSSBSCSEEEC----CC
T ss_pred CCCceeeeecc------CCCceEEEEECCCCCEEEEEcCCCE----------------EEEEECCCCccceEec----CC
Confidence 87643222111 11112233333 5567777776554 7788876543222211 11
Q ss_pred CceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 296 PRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 296 ~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
...-.++++..+.+++.|+.. ..|.+||+.+.+
T Consensus 289 ~~~i~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~ 321 (425)
T 1r5m_A 289 SQSIVSASWVGDDKVISCSMD--------------GSVRLWSLKQNT 321 (425)
T ss_dssp SSCEEEEEEETTTEEEEEETT--------------SEEEEEETTTTE
T ss_pred CccEEEEEECCCCEEEEEeCC--------------CcEEEEECCCCc
Confidence 122234444433366666532 458899987754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.03 E-value=2 Score=45.11 Aligned_cols=182 Identities=12% Similarity=0.108 Sum_probs=97.4
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWML 161 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~y 161 (647)
+.+++.|+. + +.+..||+.+.+-...-.. ....-.++.+.+.+++.|+.. ..+.+|
T Consensus 129 g~~l~sg~~--d-------g~i~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~l~s~~~d-----------g~i~vw 184 (445)
T 2ovr_B 129 GNRIVSGSD--D-------NTLKVWSAVTGKCLRTLVG----HTGGVWSSQMRDNIIISGSTD-----------RTLKVW 184 (445)
T ss_dssp TTEEEEEET--T-------SCEEEEETTTCCEEEECCC----CSSCEEEEEEETTEEEEEETT-----------SCEEEE
T ss_pred CCEEEEEEC--C-------CcEEEEECCCCcEEEEEcC----CCCCEEEEEecCCEEEEEeCC-----------CeEEEE
Confidence 456666662 2 3688899887754432221 111222333345566666643 458889
Q ss_pred ECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeE
Q 006384 162 DLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQF 241 (647)
Q Consensus 162 D~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~ 241 (647)
|+.++.-...-. .....-.++.+++..++.|+.+ ..+.+||+.+.+-...-.. ......+
T Consensus 185 d~~~~~~~~~~~----~h~~~v~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~-------~~~~v~~ 244 (445)
T 2ovr_B 185 NAETGECIHTLY----GHTSTVRCMHLHEKRVVSGSRD---------ATLRVWDIETGQCLHVLMG-------HVAAVRC 244 (445)
T ss_dssp ETTTTEEEEEEC----CCSSCEEEEEEETTEEEEEETT---------SEEEEEESSSCCEEEEEEC-------CSSCEEE
T ss_pred ECCcCcEEEEEC----CCCCcEEEEEecCCEEEEEeCC---------CEEEEEECCCCcEEEEEcC-------CcccEEE
Confidence 998875432211 1111222333445556666643 4688899887654332211 1111122
Q ss_pred EEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccC
Q 006384 242 FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMK 321 (647)
Q Consensus 242 ~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~ 321 (647)
+.+++.+++.|+.++. +.+||+.+..-...-. .......++..++..++.|+..
T Consensus 245 ~~~~~~~l~~~~~dg~----------------i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~d----- 298 (445)
T 2ovr_B 245 VQYDGRRVVSGAYDFM----------------VKVWDPETETCLHTLQ-----GHTNRVYSLQFDGIHVVSGSLD----- 298 (445)
T ss_dssp EEECSSCEEEEETTSC----------------EEEEEGGGTEEEEEEC-----CCSSCEEEEEECSSEEEEEETT-----
T ss_pred EEECCCEEEEEcCCCE----------------EEEEECCCCcEeEEec-----CCCCceEEEEECCCEEEEEeCC-----
Confidence 3337777888887655 7788877654332211 1111223333477777777653
Q ss_pred ccccccccCCcEEEEECCCCc
Q 006384 322 GDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+.|.+||+.+.+
T Consensus 299 ---------~~i~i~d~~~~~ 310 (445)
T 2ovr_B 299 ---------TSIRVWDVETGN 310 (445)
T ss_dssp ---------SCEEEEETTTCC
T ss_pred ---------CeEEEEECCCCC
Confidence 458999988765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=94.96 E-value=1.1 Score=50.06 Aligned_cols=226 Identities=13% Similarity=-0.012 Sum_probs=116.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCC-CcceeeCcEEEEECCC------CeEEEec-CCCCCCCcceeEEEEE--CCEEEEEe
Q 006384 72 CSLNINPLKETELILYGGEFYNG-NKTYVYGDLYRYDVEK------QEWKVIS-SPNSPPPRSAHQAVSW--KNYLYIFG 141 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g-~~~~~~ndl~~yd~~~------~~W~~l~-s~~~P~~R~~ha~v~~--~~~iyv~G 141 (647)
.+++..| +++.+++....... ........+|++|+.+ ...+.+. .. .. ....+.+ +++.+++.
T Consensus 133 ~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~~SpDG~~la~~ 205 (662)
T 3azo_A 133 ADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDA----HR-FVTGPRLSPDGRQAVWL 205 (662)
T ss_dssp EEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSC----SS-EECCCEECTTSSEEEEE
T ss_pred cCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecC----CC-cccCceECCCCCEEEEE
Confidence 3445555 55555555432100 0012346899999988 6666665 32 11 1112223 44444443
Q ss_pred CCcCCCCCccccccCcEEEEECC-CC---cEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEc
Q 006384 142 GEFTSPNQERFHHYKDFWMLDLK-TN---QWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDL 216 (647)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yD~~-t~---~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~ 216 (647)
........ .....+|++|+. ++ ....+... . .......+.. +++||+.+...+ ...+|.+|+
T Consensus 206 ~~~~~~~~---~~~~~i~~~d~~~~g~~~~~~~l~~~--~-~~~~~~~~~spdg~l~~~~~~~~-------~~~l~~~~~ 272 (662)
T 3azo_A 206 AWDHPRMP---WEGTELKTARVTEDGRFADTRTLLGG--P-EEAIAQAEWAPDGSLIVATDRTG-------WWNLHRVDP 272 (662)
T ss_dssp EECTTCCT---TTCEEEEEEEECTTSCEEEEEEEEEE--T-TBCEEEEEECTTSCEEEEECTTS-------SCEEEEECT
T ss_pred ECCCCCCC---CCCcEEEEEEECCCCcccccEEeCCC--C-CceEcceEECCCCeEEEEECCCC-------CeEEEEEEC
Confidence 32221110 012579999998 56 44444321 1 1111222222 667776665432 246999999
Q ss_pred CCCceEEeccCCCCC-CCCCce-eeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCC
Q 006384 217 DQFKWQEIKPRFGSM-WPSPRS-GFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (647)
Q Consensus 217 ~t~~W~~v~~~~~~~-~P~~R~-~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~ 293 (647)
.+.++..+....... .|.-.. ...++.. ++.+++.+.. .. ..+|.+|+.+.....+..
T Consensus 273 ~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~--------------~~l~~~d~~~~~~~~l~~---- 333 (662)
T 3azo_A 273 ATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA--------------AVLGILDPESGELVDAAG---- 333 (662)
T ss_dssp TTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS--------------CEEEEEETTTTEEEECCS----
T ss_pred CCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc--------------cEEEEEECCCCcEEEecC----
Confidence 888898876542110 011110 1233443 6677766654 32 358899998887766642
Q ss_pred CCCceeeEE-EEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 294 PGPRAGFSM-CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 294 P~~R~~~s~-~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+. ....++ ..-++.+++..+... ....||.+|+.+.+...+..
T Consensus 334 ~~-~~~~~~~s~~~~~~~~~~~~~~-----------~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 334 PW-TEWAATLTVSGTRAVGVAASPR-----------TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp SC-CEEEEEEEEETTEEEEEEEETT-----------EEEEEEEEETTTCCEEEEES
T ss_pred CC-CeEEEEEecCCCEEEEEEcCCC-----------CCCEEEEEECCCCceEEeec
Confidence 11 112233 344666666554321 23569999999988887754
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=94.93 E-value=3.3 Score=41.17 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=40.7
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
++.+|+.++. .+.++++|+.+.+....... +.....+.++.. +..+|+.+.. ...+
T Consensus 10 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~~-----------~~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNY---------PNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNH-----------YGDI 67 (349)
T ss_dssp TCEEEEEEET---------TTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETT-----------TTEE
T ss_pred CCEEEEEeCC---------CCeEEEEECCCCcEEEEEec--CCCCCCceeEECCCCCEEEEEeCC-----------CCcE
Confidence 5788888762 24789999998876533221 110012233333 3467877642 2569
Q ss_pred EEEECCCCcEEE
Q 006384 159 WMLDLKTNQWEQ 170 (647)
Q Consensus 159 ~~yD~~t~~W~~ 170 (647)
++||+.+.+...
T Consensus 68 ~~~d~~t~~~~~ 79 (349)
T 1jmx_B 68 YGIDLDTCKNTF 79 (349)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCcEEE
Confidence 999999886543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=1.3 Score=48.77 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=75.0
Q ss_pred CcEEEEECCCCcEEEc-ccCCC--------CCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEec
Q 006384 156 KDFWMLDLKTNQWEQL-NLKGC--------PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~-~~~~~--------P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (647)
+.+.+||..+.+-... ...++ |.+|..+..+.. +..+|+-... .+.++++|..+.+-..+.
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~---------~g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE---------TGKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT---------TTEEEEEECTTSSSCEEE
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC---------CCeEEEEEecCCCcceeE
Confidence 5678889887764332 22111 222333222222 3455554321 357889998765432222
Q ss_pred cCCCCCCCCCceeeeEEEe-CCE-EEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEE
Q 006384 226 PRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (647)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~ 303 (647)
.. +..+.-+.++.. +++ +|+.+..+ +.+.++|+.+.+-...-..+..|.+..+...
T Consensus 319 ~i-----~~~~~~~~~~~spdg~~l~va~~~~----------------~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 319 SI-----GAAPFLHDGGWDSSHRYFMTAANNS----------------NKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp EE-----ECCSSCCCEEECTTSCEEEEEEGGG----------------TEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred Ee-----ccCcCccCceECCCCCEEEEEecCC----------------CeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 22 122222334444 344 54443322 2477899998876654443444544333332
Q ss_pred EE--CCeEEEecceeccccCccccccccCCcEEEEECCCC-----cEEEeEe
Q 006384 304 VH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-----RWYPLEL 348 (647)
Q Consensus 304 ~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-----~W~~l~~ 348 (647)
+. ++.+|+.+... -+.|-++|+.+. .|+.+..
T Consensus 377 ~~p~~g~~~~s~~~~-------------d~~V~v~d~~~~~~~~~~~~~v~~ 415 (543)
T 1nir_A 377 VHPKYGPVWSTSHLG-------------DGSISLIGTDPKNHPQYAWKKVAE 415 (543)
T ss_dssp EETTTEEEEEEEBSS-------------SSEEEEEECCTTTCTTTBTSEEEE
T ss_pred CCCCCccEEEeccCC-------------CceEEEEEeCCCCCchhcCeEEEE
Confidence 23 36677765432 245888888762 2665554
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.14 Score=54.42 Aligned_cols=115 Identities=10% Similarity=0.127 Sum_probs=61.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPN 148 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~ 148 (647)
.+++..|. ++.+++.|+. + ..|.+||+.+..-..+.... .....-..+.+ ++.+++.|+..
T Consensus 123 ~~l~~~P~-~~~~lasGs~--d-------g~i~lWd~~~~~~~~~~~~~--gH~~~V~~l~f~p~~~~~l~s~s~D---- 186 (435)
T 4e54_B 123 TSLAWHPT-HPSTVAVGSK--G-------GDIMLWNFGIKDKPTFIKGI--GAGGSITGLKFNPLNTNQFYASSME---- 186 (435)
T ss_dssp EEEEECSS-CTTCEEEEET--T-------SCEEEECSSCCSCCEEECCC--SSSCCCCEEEECSSCTTEEEEECSS----
T ss_pred EEEEEeCC-CCCEEEEEeC--C-------CEEEEEECCCCCceeEEEcc--CCCCCEEEEEEeCCCCCEEEEEeCC----
Confidence 35566664 3567888873 3 36788888766543322211 11111222333 45567777653
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
..|.+||+.++....+.... .......++... ++.+++.|+.. ..|.+||+...
T Consensus 187 -------~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~d---------g~i~~wd~~~~ 241 (435)
T 4e54_B 187 -------GTTRLQDFKGNILRVFASSD-TINIWFCSLDVSASSRMVVTGDNV---------GNVILLNMDGK 241 (435)
T ss_dssp -------SCEEEEETTSCEEEEEECCS-SCSCCCCCEEEETTTTEEEEECSS---------SBEEEEESSSC
T ss_pred -------CEEEEeeccCCceeEEeccC-CCCccEEEEEECCCCCEEEEEeCC---------CcEeeeccCcc
Confidence 34778899887665554311 111111222222 56777777753 45788887654
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.96 Score=48.76 Aligned_cols=59 Identities=19% Similarity=0.400 Sum_probs=40.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
++++|+|-| +..|+||..+++.....-+..| . --++....+++|+|-| +..|+
T Consensus 158 ~~~~yfFkG-----------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG-------------~~y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-----------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG-------------NQFLR 210 (460)
T ss_dssp SSEEEEEET-----------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET-------------TEEEE
T ss_pred CCeEEEEec-----------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC-------------CEEEE
Confidence 577888888 3679999998876543322222 2 3455556899999988 46788
Q ss_pred EECCCC
Q 006384 161 LDLKTN 166 (647)
Q Consensus 161 yD~~t~ 166 (647)
||..+.
T Consensus 211 fd~~~~ 216 (460)
T 1qhu_A 211 FNPVSG 216 (460)
T ss_dssp ECTTTC
T ss_pred EcCccC
Confidence 887654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.86 E-value=1 Score=43.50 Aligned_cols=188 Identities=8% Similarity=0.028 Sum_probs=98.4
Q ss_pred eCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCC-CcEEEcccCCCC
Q 006384 100 YGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-NQWEQLNLKGCP 177 (647)
Q Consensus 100 ~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t-~~W~~~~~~~~P 177 (647)
-..+++||+.+.+...+... ...-.+++.. ++..+++++. ..+++||+.+ .....+.... .
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~------------~~i~~~d~~~~~~~~~~~~~~-~ 83 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT----PELFEAPNWSPDGKYLLLNSE------------GLLYRLSLAGDPSPEKVDTGF-A 83 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE----SSCCEEEEECTTSSEEEEEET------------TEEEEEESSSCCSCEECCCTT-C
T ss_pred ceeEEEEeCCCCceeeeccC----CcceEeeEECCCCCEEEEEcC------------CeEEEEeCCCCCCceEecccc-c
Confidence 35799999999887765432 1112222222 4555555531 4699999998 7776654311 1
Q ss_pred CCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CC-EEEEEeccc
Q 006384 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYS 255 (647)
Q Consensus 178 ~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~-~Iyv~GG~~ 255 (647)
..........-+++.+++++.... ....+|.+++.+.....+... . . ...++.. ++ .|++.++..
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~-----~-~--~~~~~~spdg~~l~~~~~~~ 150 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEF-----GKSAIYLLPSTGGTPRLMTKN-----L-P--SYWHGWSPDGKSFTYCGIRD 150 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTT-----SSCEEEEEETTCCCCEECCSS-----S-S--EEEEEECTTSSEEEEEEEET
T ss_pred cccccceEECCCCCEEEEEEeCCC-----CcceEEEEECCCCceEEeecC-----C-C--ccceEECCCCCEEEEEECCC
Confidence 112222222235566666553221 146789999888776555433 1 1 2223333 34 455445433
Q ss_pred CCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEE
Q 006384 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
.. ..+|.+++.+.....+... ...-..++.. ++..+++++..+ -...||
T Consensus 151 ~~--------------~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~-----------~~~~i~ 200 (297)
T 2ojh_A 151 QV--------------FDIYSMDIDSGVETRLTHG-----EGRNDGPDYSPDGRWIYFNSSRT-----------GQMQIW 200 (297)
T ss_dssp TE--------------EEEEEEETTTCCEEECCCS-----SSCEEEEEECTTSSEEEEEECTT-----------SSCEEE
T ss_pred Cc--------------eEEEEEECCCCcceEcccC-----CCccccceECCCCCEEEEEecCC-----------CCccEE
Confidence 21 3588888877766555331 1111223332 555555544211 135688
Q ss_pred EEECCCCcEEEeE
Q 006384 335 GFQLDNHRWYPLE 347 (647)
Q Consensus 335 ~yd~~t~~W~~l~ 347 (647)
.+++.......+.
T Consensus 201 ~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 201 RVRVDGSSVERIT 213 (297)
T ss_dssp EEETTSSCEEECC
T ss_pred EECCCCCCcEEEe
Confidence 8887776655543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.62 Score=47.23 Aligned_cols=61 Identities=11% Similarity=-0.026 Sum_probs=34.8
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEccc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~ 173 (647)
.+|.+|..+.++..+.... ....-..++.. +++||+.+.... -..+++|++.+..+..+..
T Consensus 19 ~v~~~d~~tg~~~~~~~~~--~~~~p~~~a~spdg~l~~~~~~~~---------~~~v~~~~~~~g~~~~~~~ 80 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLA--ATQNPTYLALSAKDCLYSVDKEDD---------EGGIAAWQIDGQTAHKLNT 80 (347)
T ss_dssp EEEEEETTTTEEEEEEEEE--ECSCCCCEEECTTCEEEEEEEETT---------EEEEEEEEEETTEEEEEEE
T ss_pred EEEEEcCCCCeEEEeeeee--ccCCcceEEEccCCeEEEEEecCC---------CceEEEEEecCCcEEEeee
Confidence 4788888888887643211 01111112222 567777653211 2568999998888766654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=94.82 E-value=1 Score=45.21 Aligned_cols=129 Identities=12% Similarity=0.018 Sum_probs=70.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
.++++.+ ++.||+.+.. .+.|++||+.+.++..+... ....-++++.. ++.||+.......
T Consensus 48 ~~~~~~~--~g~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~---~~~~~~~i~~~~dg~l~v~~~~~~~---- 109 (333)
T 2dg1_A 48 EGLNFDR--QGQLFLLDVF---------EGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDFK---- 109 (333)
T ss_dssp EEEEECT--TSCEEEEETT---------TCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTSS----
T ss_pred cCcEECC--CCCEEEEECC---------CCEEEEEeCCCCcEEEEeeC---CCCCcceEEECCCCcEEEEeCCCCC----
Confidence 4455555 5778887652 13689999999888765421 11223333333 5678887542211
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEec
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (647)
....+++||+.+.....+... ......-..+++. ++++|+....... ......|++||+.+.+...+.
T Consensus 110 ---~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~---~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 110 ---STGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYS---TNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp ---SCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBT---TBCCEEEEEECTTSCCEEEEE
T ss_pred ---CCceEEEEeCCCCEEEEEEcc-CccCCcccceEECCCCCEEEEeccccc---cCCCceEEEEeCCCCEEEEee
Confidence 124699999988876533221 1111122222222 6678875432100 011356899998877766553
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.80 E-value=1.7 Score=45.95 Aligned_cols=66 Identities=11% Similarity=-0.019 Sum_probs=37.7
Q ss_pred CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEE
Q 006384 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 135 ~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (647)
+.+++.|+.. ..+.+||+.+......-..+ ......+.+.. ++.+++.|+.+ ..|.+|
T Consensus 210 ~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~-h~~~v~~~~~s-d~~~l~s~~~d---------~~v~vw 267 (450)
T 2vdu_B 210 HQFIITSDRD-----------EHIKISHYPQCFIVDKWLFG-HKHFVSSICCG-KDYLLLSAGGD---------DKIFAW 267 (450)
T ss_dssp CEEEEEEETT-----------SCEEEEEESCTTCEEEECCC-CSSCEEEEEEC-STTEEEEEESS---------SEEEEE
T ss_pred CcEEEEEcCC-----------CcEEEEECCCCceeeeeecC-CCCceEEEEEC-CCCEEEEEeCC---------CeEEEE
Confidence 6777877743 35788888776543321111 11222222222 67777777742 468889
Q ss_pred EcCCCceE
Q 006384 215 DLDQFKWQ 222 (647)
Q Consensus 215 D~~t~~W~ 222 (647)
|+.+.+..
T Consensus 268 d~~~~~~~ 275 (450)
T 2vdu_B 268 DWKTGKNL 275 (450)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEe
Confidence 98887643
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=94.76 E-value=4 Score=41.23 Aligned_cols=136 Identities=12% Similarity=0.021 Sum_probs=71.0
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+.+||+.+......-. ...... .+++.. ++.+++.|+.+ ..+.+||+.+..-...-.. .
T Consensus 164 ~~i~~wd~~~~~~~~~~~--~h~~~v-~~~~~~~~~~~l~sg~~d---------~~v~~wd~~~~~~~~~~~~------h 225 (340)
T 1got_B 164 TTCALWDIETGQQTTTFT--GHTGDV-MSLSLAPDTRLFVSGACD---------ASAKLWDVREGMCRQTFTG------H 225 (340)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSSCE-EEEEECTTSSEEEEEETT---------SCEEEEETTTCSEEEEECC------C
T ss_pred CcEEEEECCCCcEEEEEc--CCCCce-EEEEECCCCCEEEEEeCC---------CcEEEEECCCCeeEEEEcC------C
Confidence 457889998876433211 111111 122222 56677777753 4578889877653322111 1
Q ss_pred CceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEE-EEE-CCeEEE
Q 006384 235 PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM-CVH-KKRALL 311 (647)
Q Consensus 235 ~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~-~~~-~~~iyi 311 (647)
...-.+++.. ++.+++.|+.++. +.+||+.+..-...-.. +....+..+ ++. ++.+++
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~d~~----------------v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSDDAT----------------CRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEE
T ss_pred cCCEEEEEEcCCCCEEEEEcCCCc----------------EEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEEE
Confidence 1112223333 6677888887665 77888877653322111 111122233 333 567777
Q ss_pred ecceeccccCccccccccCCcEEEEECCCCc
Q 006384 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
.|+.. ..|.+||+.+..
T Consensus 287 ~g~~d--------------~~i~vwd~~~~~ 303 (340)
T 1got_B 287 AGYDD--------------FNCNVWDALKAD 303 (340)
T ss_dssp EEETT--------------SEEEEEETTTCC
T ss_pred EECCC--------------CeEEEEEcccCc
Confidence 77642 458899986643
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.38 Score=55.28 Aligned_cols=106 Identities=9% Similarity=0.165 Sum_probs=61.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--C--CEEEEEeCCcCCCCCccccccC
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYK 156 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~--~~iyv~GG~~~~~~~~~~~~~~ 156 (647)
++.+++.||. + ..+.+||+...++..+.... ........+.+ . +.+++.|+.. .
T Consensus 20 dg~~latg~~--d-------g~I~vwd~~~~~~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~D-----------g 77 (753)
T 3jro_A 20 YGKRLATCSS--D-------KTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYD-----------G 77 (753)
T ss_dssp SSCCEEEEET--T-------TEEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETT-----------S
T ss_pred CCCeEEEEEC--C-------CcEEEEecCCCCCccceecc--CCcCceEEEEecCCCCCCEEEEEeCC-----------C
Confidence 4667777772 2 36788888877777654322 11222233333 2 5677777753 3
Q ss_pred cEEEEECCCCcEEEcccCCCCCCcceeEEEEE--C--CEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 157 dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
.|.+||+.++.|..+... ......-.++.+ + +.+++.|+.+ ..+.+||+.+.
T Consensus 78 ~I~vwd~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~~l~sgs~d---------g~I~vwdl~~~ 133 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKEN 133 (753)
T ss_dssp CEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCSS
T ss_pred eEEEEECCCCcccccccc--cCCCCCeEEEEECCCCCCCEEEEEeCC---------CcEEEEEeecC
Confidence 588889888887766552 222222223333 3 6677777753 36788888765
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=94.67 E-value=4.1 Score=46.03 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=67.6
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCCC---C---cceeEEEEECCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPP---P---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P~---~---R~~ha~v~~~~~iyv~GG~~~~~~~~~~ 152 (647)
++.||+... .+.|+.+|..+. .|+.-....... . ....+.++.++.||+...
T Consensus 66 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---------- 125 (668)
T 1kv9_A 66 DGVIYTSMS----------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---------- 125 (668)
T ss_dssp TTEEEEEEG----------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC----------
Confidence 788888765 246899998876 588543211000 0 011234556888887542
Q ss_pred cccCcEEEEECCCCc--EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEe
Q 006384 153 HHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEI 224 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v 224 (647)
-..++.||..+++ |+.-............+.++.++.||+..+.... .....|+.||+.+.+ |+.-
T Consensus 126 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 126 --DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY----GVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp --TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCc----CCCCEEEEEECCCCcEEEEec
Confidence 1468999998874 8764421111112222345678888874332111 123579999998765 8764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.98 Score=45.73 Aligned_cols=162 Identities=10% Similarity=0.071 Sum_probs=78.2
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCC--CeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~--~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
+.+.| ++.+++.|+. + ..+.+||+.. ..+..+.... ........+.+ ++.+++.|+..
T Consensus 113 v~~sp--~g~~las~s~--D-------~~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D----- 174 (330)
T 2hes_X 113 VAWSN--DGYYLATCSR--D-------KSVWIWETDESGEEYECISVLQ--EHSQDVKHVIWHPSEALLASSSYD----- 174 (330)
T ss_dssp EEECT--TSCEEEEEET--T-------SCEEEEECCTTCCCCEEEEEEC--CCSSCEEEEEECSSSSEEEEEETT-----
T ss_pred EEECC--CCCEEEEEeC--C-------CEEEEEeccCCCCCeEEEEEec--cCCCceEEEEECCCCCEEEEEcCC-----
Confidence 44444 4666666662 2 3577788742 2343322111 11111223333 45677777653
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-C--CEEEEEecccCCCCceeeeCcEEEEEcCC------Cc
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQ------FK 220 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t------~~ 220 (647)
..+.+||..+..|..+.......... .++... + +.+++.|+.+. .+.+||+.+ ..
T Consensus 175 ------~~i~iW~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~D~---------~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 175 ------DTVRIWKDYDDDWECVAVLNGHEGTV-WSSDFDKTEGVFRLCSGSDDS---------TVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp ------SCEEEEEEETTEEEEEEEECCCSSCE-EEEEECCSSSSCEEEEEETTS---------CEEEEEEEEECTTSCEE
T ss_pred ------CeEEEEECCCCCeeEEEEccCCCCcE-EEEEecCCCCeeEEEEEeCCC---------eEEEEEecCCCccccce
Confidence 34667777777676554311111111 112222 2 34555666432 355555432 24
Q ss_pred eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
|..+...+. .....-.+++...+.+++.||.++. +.+|+..+..|..+.
T Consensus 239 ~~~~~~~~~---~h~~~v~~v~~s~~~~l~s~~~dg~----------------v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 239 WVCEAILPD---VHKRQVYNVAWGFNGLIASVGADGV----------------LAVYEEVDGEWKVFA 287 (330)
T ss_dssp EEEEEECCS---CCSSCEEEEEECTTSCEEEEETTSC----------------EEEEEEETTEEEEEE
T ss_pred eEEeeeccc---ccccceEEEEEcCCCEEEEEeCCCE----------------EEEEEcCCCceEEEe
Confidence 554443311 1122223333335557777877655 677887777886654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=94.64 E-value=2.9 Score=43.26 Aligned_cols=180 Identities=9% Similarity=0.036 Sum_probs=95.1
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
+.++.||..+.....+.... . ......+.+ ++.++++|+.. ..+.+||+.+......-. .
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~--~-~~~v~~v~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~----~ 174 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD--E-STYVASVKWSHDGSFLSVGLGN-----------GLVDIYDVESQTKLRTMA----G 174 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC--T-TCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEEEEC----C
T ss_pred CeEEEeeCCCCcEeEeeecC--C-CCCEEEEEECCCCCEEEEECCC-----------CeEEEEECcCCeEEEEec----C
Confidence 46899999988776554321 1 112223333 45666666642 358889988776433321 1
Q ss_pred CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
......++.+++.+++.|+.. ..+.+||+.+..-...... .....-.+++.. ++.+++.|+.++.
T Consensus 175 ~~~~v~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 175 HQARVGCLSWNRHVLSSGSRS---------GAIHHHDVRIANHQIGTLQ-----GHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp CSSCEEEEEEETTEEEEEETT---------SEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCceEEEEECCCEEEEEcCC---------CCEEEEecccCcceeeEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 122223444566677777753 4688888874332211111 111112223333 6677888887655
Q ss_pred CCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE--CCeEEEecceeccccCccccccccCCcEEE
Q 006384 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (647)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~ 335 (647)
+.+||+.+..-...-. .....-.++++. +..+++.||-. .-..|.+
T Consensus 241 ----------------v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs------------~d~~i~i 288 (401)
T 4aez_A 241 ----------------VQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGT------------MDKQIHF 288 (401)
T ss_dssp ----------------EEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCT------------TTCEEEE
T ss_pred ----------------EEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCC------------CCCEEEE
Confidence 7888887654332211 111112233333 45677776421 1245999
Q ss_pred EECCCCcEE
Q 006384 336 FQLDNHRWY 344 (647)
Q Consensus 336 yd~~t~~W~ 344 (647)
||+.+..-.
T Consensus 289 ~d~~~~~~~ 297 (401)
T 4aez_A 289 WNAATGARV 297 (401)
T ss_dssp EETTTCCEE
T ss_pred EECCCCCEE
Confidence 998876533
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=94.53 E-value=1.3 Score=49.35 Aligned_cols=208 Identities=8% Similarity=-0.107 Sum_probs=100.6
Q ss_pred CcEEEEECC--C-CeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCC------CcEE
Q 006384 101 GDLYRYDVE--K-QEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT------NQWE 169 (647)
Q Consensus 101 ndl~~yd~~--~-~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t------~~W~ 169 (647)
..||.+++. . ...+.++.............+.+ +++.+++......... .......++++|+.+ ....
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG-PSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS-TTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC-CCCceeEEEEEECCCCccccCCcee
Confidence 478999987 4 66666654210001122222333 4444444433210000 001236899999988 6666
Q ss_pred Ecc-cCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcC-CC---ceEEeccCCCCCCCCCceeeeEEEe
Q 006384 170 QLN-LKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD-QF---KWQEIKPRFGSMWPSPRSGFQFFVY 244 (647)
Q Consensus 170 ~~~-~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~---~W~~v~~~~~~~~P~~R~~~s~~~~ 244 (647)
.+. .. + .........-+++.+++.......... ....|+++|+. +. ....+... . .......+..
T Consensus 181 ~l~~~~--~-~~~~~~~~SpDG~~la~~~~~~~~~~~-~~~~i~~~d~~~~g~~~~~~~l~~~-----~-~~~~~~~~~s 250 (662)
T 3azo_A 181 ELSDDA--H-RFVTGPRLSPDGRQAVWLAWDHPRMPW-EGTELKTARVTEDGRFADTRTLLGG-----P-EEAIAQAEWA 250 (662)
T ss_dssp ESSCSC--S-SEECCCEECTTSSEEEEEEECTTCCTT-TCEEEEEEEECTTSCEEEEEEEEEE-----T-TBCEEEEEEC
T ss_pred EEEecC--C-CcccCceECCCCCEEEEEECCCCCCCC-CCcEEEEEEECCCCcccccEEeCCC-----C-CceEcceEEC
Confidence 664 31 1 111111222255544444432211000 12579999998 56 34444321 0 1112223333
Q ss_pred -CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCC---CCCCce-eeEEEEE-CCeEEEecceecc
Q 006384 245 -QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM---PPGPRA-GFSMCVH-KKRALLFGGVVDM 318 (647)
Q Consensus 245 -~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~---~P~~R~-~~s~~~~-~~~iyifGG~~~~ 318 (647)
+++||+.+...+. ..+|++|+.+..+..+..... .|.-.. ..++++. ++++++.+.. .
T Consensus 251 pdg~l~~~~~~~~~--------------~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~- 314 (662)
T 3azo_A 251 PDGSLIVATDRTGW--------------WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G- 314 (662)
T ss_dssp TTSCEEEEECTTSS--------------CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S-
T ss_pred CCCeEEEEECCCCC--------------eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C-
Confidence 5667766654321 259999998888887754211 011110 1223444 5677666543 2
Q ss_pred ccCccccccccCCcEEEEECCCCcEEEe
Q 006384 319 EMKGDVIMSLFLNELYGFQLDNHRWYPL 346 (647)
Q Consensus 319 ~~~~~~~~~~~~ndl~~yd~~t~~W~~l 346 (647)
...||.+|+.+.....+
T Consensus 315 -----------~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 315 -----------AAVLGILDPESGELVDA 331 (662)
T ss_dssp -----------SCEEEEEETTTTEEEEC
T ss_pred -----------ccEEEEEECCCCcEEEe
Confidence 35688888877665443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=94.45 E-value=3.8 Score=42.20 Aligned_cols=104 Identities=12% Similarity=-0.053 Sum_probs=55.5
Q ss_pred CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCE-EEEEecccCCCCCcccCCC
Q 006384 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSE 266 (647)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~ 266 (647)
++.+++.|+.. ..+.+||+.+..-...... .....-.+++.. ++. +++.|+.++.
T Consensus 258 ~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~g~~dg~--------- 314 (420)
T 3vl1_A 258 YGKYVIAGHVS---------GVITVHNVFSKEQTIQLPS-----KFTCSCNSLTVDGNNANYIYAGYENGM--------- 314 (420)
T ss_dssp TTEEEEEEETT---------SCEEEEETTTCCEEEEECC-----TTSSCEEEEEECSSCTTEEEEEETTSE---------
T ss_pred CCCEEEEEcCC---------CeEEEEECCCCceeEEccc-----ccCCCceeEEEeCCCCCEEEEEeCCCe---------
Confidence 56677777643 3588999887653322221 111122233333 344 7777776554
Q ss_pred CCceeeeEEEEeCCCCe--EEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 267 KGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 267 ~~~~~~dv~~yd~~t~~--W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
+.+||+.+.. -..+... ....-.+++..++.+++.|+.. ..|.+|++.+
T Consensus 315 -------i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~s~~~d--------------~~v~iw~~~~ 365 (420)
T 3vl1_A 315 -------LAQWDLRSPECPVGEFLIN----EGTPINNVYFAAGALFVSSGFD--------------TSIKLDIISD 365 (420)
T ss_dssp -------EEEEETTCTTSCSEEEEES----TTSCEEEEEEETTEEEEEETTT--------------EEEEEEEECC
T ss_pred -------EEEEEcCCCcCchhhhhcc----CCCCceEEEeCCCCEEEEecCC--------------ccEEEEeccC
Confidence 7888886642 2222210 1112223344578888887753 3477887655
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=94.42 E-value=2.1 Score=44.75 Aligned_cols=151 Identities=9% Similarity=-0.005 Sum_probs=77.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~ 150 (647)
++.+.| ++.+++.|+. + ..+.+||..+......-.. ....-..+.+ ++.+++.||...
T Consensus 113 ~~~~~p--~~~~l~s~s~--D-------g~i~vwd~~~~~~~~~l~~----h~~~V~~v~~~~~~~~l~sgs~D~----- 172 (410)
T 1vyh_C 113 RVIFHP--VFSVMVSASE--D-------ATIKVWDYETGDFERTLKG----HTDSVQDISFDHSGKLLASCSADM----- 172 (410)
T ss_dssp EEEECS--SSSEEEEEES--S-------SCEEEEETTTCCCCEEECC----CSSCEEEEEECTTSSEEEEEETTS-----
T ss_pred EEEEcC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEec----cCCcEEEEEEcCCCCEEEEEeCCC-----
Confidence 344555 4667777773 2 3688889887654322111 1111222333 466777777543
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
.+.+||+.+..-.. . +......-.++.+ ++.+++.|+.+ ..+.+||+.+......-..
T Consensus 173 ------~i~iwd~~~~~~~~--~--~~~h~~~V~~v~~~p~~~~l~s~s~D---------~~i~~wd~~~~~~~~~~~~- 232 (410)
T 1vyh_C 173 ------TIKLWDFQGFECIR--T--MHGHDHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYCVKTFTG- 232 (410)
T ss_dssp ------CCCEEETTSSCEEE--C--CCCCSSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCEEEEEEC-
T ss_pred ------eEEEEeCCCCceeE--E--EcCCCCCEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEeC-
Confidence 35677877654322 2 1111111122223 45666777753 4688899887654322111
Q ss_pred CCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeE
Q 006384 229 GSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (647)
....-..+... ++.+++.|+.++. +.+||+.+...
T Consensus 233 -----h~~~v~~~~~~~~g~~l~s~s~D~~----------------v~vwd~~~~~~ 268 (410)
T 1vyh_C 233 -----HREWVRMVRPNQDGTLIASCSNDQT----------------VRVWVVATKEC 268 (410)
T ss_dssp -----CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTCCE
T ss_pred -----CCccEEEEEECCCCCEEEEEcCCCe----------------EEEEECCCCce
Confidence 11111122222 5677778877654 66777766543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.41 E-value=8 Score=43.82 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=67.6
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCC---CC---cceeEEEEECCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP---PP---RSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P---~~---R~~ha~v~~~~~iyv~GG~~~~~~~~~~ 152 (647)
++.||+... .+.|+.+|..+. .|+.-...... .. ....+.++.++.||+...
T Consensus 70 ~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---------- 129 (689)
T 1yiq_A 70 DGVMYTTGP----------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---------- 129 (689)
T ss_dssp TTEEEEECG----------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEEcC----------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc----------
Confidence 788888765 246999999876 58854321100 00 011234556888888642
Q ss_pred cccCcEEEEECCCCc--EEEccc-CCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEe
Q 006384 153 HHYKDFWMLDLKTNQ--WEQLNL-KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEI 224 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~-~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v 224 (647)
-..++.+|..|++ |+.-.. ..........+.++.++.+|+-.+.... .....|+.||..+.+ |+.-
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~----~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 --DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF----GVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp --TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc----CCCCEEEEEECCCCcEEEEec
Confidence 1468999998874 876442 1101112222345678888874322111 123579999998876 8764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=94.41 E-value=2.7 Score=42.29 Aligned_cols=215 Identities=12% Similarity=0.115 Sum_probs=100.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~ 150 (647)
.+++.| +++||+.+.. + -.+.+++|++.+.+++.+...... ...-..++.. +..||+.+..
T Consensus 44 ~~a~sp--dg~l~~~~~~---~----~~~~v~~~~~~~g~~~~~~~~~~~-~~~p~~~a~spdg~~l~~~~~~------- 106 (347)
T 3hfq_A 44 YLALSA--KDCLYSVDKE---D----DEGGIAAWQIDGQTAHKLNTVVAP-GTPPAYVAVDEARQLVYSANYH------- 106 (347)
T ss_dssp CEEECT--TCEEEEEEEE---T----TEEEEEEEEEETTEEEEEEEEEEE-SCCCSEEEEETTTTEEEEEETT-------
T ss_pred eEEEcc--CCeEEEEEec---C----CCceEEEEEecCCcEEEeeeeecC-CCCCEEEEECCCCCEEEEEeCC-------
Confidence 355666 5677766541 1 024789999988887766431100 1111223333 3457776531
Q ss_pred cccccCcEEEEECC-CCcEEEccc---CCC-CCCc----ceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcC-CC
Q 006384 151 RFHHYKDFWMLDLK-TNQWEQLNL---KGC-PSPR----SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QF 219 (647)
Q Consensus 151 ~~~~~~dv~~yD~~-t~~W~~~~~---~~~-P~~R----~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~ 219 (647)
-..+.+|++. +.....+.. .+. |.+| .-+.+++. ++++|+.+.. .+.+++|++. +.
T Consensus 107 ----~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~---------~~~v~~~~~~~~g 173 (347)
T 3hfq_A 107 ----KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG---------SDKVYVYNVSDAG 173 (347)
T ss_dssp ----TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT---------TTEEEEEEECTTS
T ss_pred ----CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC---------CCEEEEEEECCCC
Confidence 1356677764 334433322 111 2111 12223332 5567765432 2468888887 56
Q ss_pred ceEEeccCCCCCCCCCceeeeEEEe-CC-EEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCC-
Q 006384 220 KWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP- 296 (647)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~- 296 (647)
+...+..... +....-..++.. ++ .||+.+..... -.+|.++..+..+..+......|..
T Consensus 174 ~~~~~~~~~~---~~g~~p~~~~~spdg~~l~v~~~~~~~--------------v~v~~~~~~~g~~~~~~~~~~~~~~~ 236 (347)
T 3hfq_A 174 QLSEQSVLTM---EAGFGPRHLVFSPDGQYAFLAGELSSQ--------------IASLKYDTQTGAFTQLGIVKTIPADY 236 (347)
T ss_dssp CEEEEEEEEC---CTTCCEEEEEECTTSSEEEEEETTTTE--------------EEEEEEETTTTEEEEEEEEESSCTTC
T ss_pred cEEEeeeEEc---CCCCCCceEEECCCCCEEEEEeCCCCE--------------EEEEEecCCCCceEEeeeeeecCCCC
Confidence 5554432210 111111123333 44 47776543322 1255555556777655433222221
Q ss_pred ---ceeeEEEEE-CCe-EEEecceeccccCccccccccCCcEEEEECCC-CcEEEeEe
Q 006384 297 ---RAGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-HRWYPLEL 348 (647)
Q Consensus 297 ---R~~~s~~~~-~~~-iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t-~~W~~l~~ 348 (647)
.....+++. +++ ||+.+.. .+.|.+|++.. ..+..+..
T Consensus 237 ~~~~~~~~i~~spdG~~l~v~~~~--------------~~~v~v~~~~~~g~~~~~~~ 280 (347)
T 3hfq_A 237 TAHNGAAAIRLSHDGHFLYVSNRG--------------YNTLAVFAVTADGHLTLIQQ 280 (347)
T ss_dssp CSCCEEEEEEECTTSCEEEEEEET--------------TTEEEEEEECGGGCEEEEEE
T ss_pred CCCCcceeEEECCCCCEEEEEeCC--------------CCEEEEEEECCCCcEEEeEE
Confidence 112233333 444 6665431 25688888763 34554443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.40 E-value=2.2 Score=42.13 Aligned_cols=210 Identities=7% Similarity=-0.094 Sum_probs=106.7
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN 148 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~ 148 (647)
...+.+..|. ++.||+++.. .+.+++||+.+. .+.+... . ..-++++.. ++.||+....
T Consensus 29 ~~eg~~~d~~-g~~l~~~~~~---------~~~i~~~~~~~~-~~~~~~~---~-~~~~~l~~~~dg~l~v~~~~----- 88 (296)
T 3e5z_A 29 WTEGPVYVPA-RSAVIFSDVR---------QNRTWAWSDDGQ-LSPEMHP---S-HHQNGHCLNKQGHLIACSHG----- 88 (296)
T ss_dssp SEEEEEEEGG-GTEEEEEEGG---------GTEEEEEETTSC-EEEEESS---C-SSEEEEEECTTCCEEEEETT-----
T ss_pred cccCCeEeCC-CCEEEEEeCC---------CCEEEEEECCCC-eEEEECC---C-CCcceeeECCCCcEEEEecC-----
Confidence 4456666662 3458888762 247899999988 6665432 1 122333332 5678876531
Q ss_pred CccccccCcEEEEECCCCcEEEcccCC--CCCCcceeEEEEECCEEEEE----ecccCC----CCceeeeCcEEEEEcCC
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKG--CPSPRSGHRMVLYKHKIIVF----GGFYDT----LREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~--~P~~R~~h~~~~~~~~lyv~----GG~~~~----~~~~~~~~dv~~yD~~t 218 (647)
...+++||+.+++...+.... .+..+....++--+++||+. |..... .........||.|++.
T Consensus 89 ------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 89 ------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp ------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred ------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 146899999888877664311 11112222223336788886 432100 0000012478999987
Q ss_pred CceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCC-CCeE-EEeec-CCCCC
Q 006384 219 FKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEW-SKVKK-IGMPP 294 (647)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W-~~v~~-~g~~P 294 (647)
.+...+... ...+ .+++.. ++.+++.+.... .+++|++. +.+. ..... .....
T Consensus 162 g~~~~~~~~----~~~~---~gi~~s~dg~~lv~~~~~~----------------~i~~~~~~~~g~~~~~~~~~~~~~~ 218 (296)
T 3e5z_A 162 GTLSAPIRD----RVKP---NGLAFLPSGNLLVSDTGDN----------------ATHRYCLNARGETEYQGVHFTVEPG 218 (296)
T ss_dssp SCEEEEECC----CSSE---EEEEECTTSCEEEEETTTT----------------EEEEEEECSSSCEEEEEEEECCSSS
T ss_pred CCEEEeecC----CCCC---ccEEECCCCCEEEEeCCCC----------------eEEEEEECCCCcCcCCCeEeeCCCC
Confidence 555544322 0111 233333 455554443322 47888875 4444 21111 11001
Q ss_pred CCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 295 ~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.| .++++- ++.||+..+ +.|++||+.......+..
T Consensus 219 ~p---~~i~~d~~G~l~v~~~----------------~~v~~~~~~g~~~~~~~~ 254 (296)
T 3e5z_A 219 KT---DGLRVDAGGLIWASAG----------------DGVHVLTPDGDELGRVLT 254 (296)
T ss_dssp CC---CSEEEBTTSCEEEEET----------------TEEEEECTTSCEEEEEEC
T ss_pred CC---CeEEECCCCCEEEEcC----------------CeEEEECCCCCEEEEEEC
Confidence 11 123333 577777651 348999988655555544
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.36 E-value=2.9 Score=42.07 Aligned_cols=161 Identities=8% Similarity=0.009 Sum_probs=79.3
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
.+..|+..+..-...-.. ... ....+.+ ++.+++.|+.. ..+.+||+.+.+-...-. ....
T Consensus 145 ~v~i~~~~~~~~~~~~~~---~~~-~v~~~~~spdg~~lasg~~d-----------g~i~iwd~~~~~~~~~~~--~h~~ 207 (321)
T 3ow8_A 145 KVNIFGVESGKKEYSLDT---RGK-FILSIAYSPDGKYLASGAID-----------GIINIFDIATGKLLHTLE--GHAM 207 (321)
T ss_dssp EEEEEETTTCSEEEEEEC---SSS-CEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCSS
T ss_pred cEEEEEcCCCceeEEecC---CCc-eEEEEEECCCCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc--ccCC
Confidence 567778776543321111 111 1222333 46667777643 358889998875432211 1111
Q ss_pred cceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 180 RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 180 R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
... +++. -++.+++.|+.+ ..+.+||+.+......-.. ....-.+++.. ++.+++.|+.++.
T Consensus 208 ~v~-~l~~spd~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~------h~~~v~~~~~sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 208 PIR-SLTFSPDSQLLVTASDD---------GYIKIYDVQHANLAGTLSG------HASWVLNVAFCPDDTHFVSSSSDKS 271 (321)
T ss_dssp CCC-EEEECTTSCEEEEECTT---------SCEEEEETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cee-EEEEcCCCCEEEEEcCC---------CeEEEEECCCcceeEEEcC------CCCceEEEEECCCCCEEEEEeCCCc
Confidence 111 2222 256777777753 3588889877654332111 11111223333 5677788887655
Q ss_pred CCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecce
Q 006384 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGV 315 (647)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~ 315 (647)
+.+||+.+.+-...-. + ....-.++++. ++..++.||.
T Consensus 272 ----------------v~iwd~~~~~~~~~~~-~---h~~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 272 ----------------VKVWDVGTRTCVHTFF-D---HQDQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp ----------------EEEEETTTTEEEEEEC-C---CSSCEEEEEECTTSSEEEEEET
T ss_pred ----------------EEEEeCCCCEEEEEEc-C---CCCcEEEEEECCCCCEEEEEeC
Confidence 7788887765333211 1 11112233333 4566677764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=94.36 E-value=5.6 Score=41.75 Aligned_cols=172 Identities=11% Similarity=0.077 Sum_probs=87.6
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
+.+++.|+. + +.+..||+.+.+-...-.. ....-.+++.. ++..++.|+.. ..+.+
T Consensus 280 ~~~l~~~~~--d-------~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~d-----------g~i~v 336 (464)
T 3v7d_B 280 GNIVVSGSY--D-------NTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISASMD-----------TTIRI 336 (464)
T ss_dssp TTEEEEEET--T-------SCEEEEETTTTEEEEEECC---CSSCEEEEEEETTTTEEEEEETT-----------SCEEE
T ss_pred CCEEEEEeC--C-------CeEEEEECCCCcEEEEecC---CCCCEEEEEEcCCCCEEEEEeCC-----------CcEEE
Confidence 455666662 2 3688999987765433221 11112223333 45566666642 45889
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeee
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s 240 (647)
||+.+.+-...- ......-.++.+.+..++.|+.+ ..+.+||+.+..-...... . ......
T Consensus 337 wd~~~~~~~~~~----~~h~~~v~~~~~~~~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~-----~-~~~~~~ 397 (464)
T 3v7d_B 337 WDLENGELMYTL----QGHTALVGLLRLSDKFLVSAAAD---------GSIRGWDANDYSRKFSYHH-----T-NLSAIT 397 (464)
T ss_dssp EETTTTEEEEEE----CCCSSCEEEEEECSSEEEEEETT---------SEEEEEETTTCCEEEEEEC-----T-TCCCEE
T ss_pred EECCCCcEEEEE----eCCCCcEEEEEEcCCEEEEEeCC---------CcEEEEECCCCceeeeecC-----C-CCccEE
Confidence 999877533221 11122223445566677777753 3588899887653322211 1 112222
Q ss_pred EEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecce
Q 006384 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (647)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~ 315 (647)
+...++.+++.|+ ++. +.+||+.+.+-...... +....-.+++..++.+++.++.
T Consensus 398 ~~~~~~~~l~~~~-dg~----------------i~iwd~~~g~~~~~~~~---~~~~~v~~v~~~~~~l~~~~~~ 452 (464)
T 3v7d_B 398 TFYVSDNILVSGS-ENQ----------------FNIYNLRSGKLVHANIL---KDADQIWSVNFKGKTLVAAVEK 452 (464)
T ss_dssp EEEECSSEEEEEE-TTE----------------EEEEETTTCCEEESCTT---TTCSEEEEEEEETTEEEEEEEE
T ss_pred EEEeCCCEEEEec-CCe----------------EEEEECCCCcEEehhhc---cCCCcEEEEEecCCEEEEEEEe
Confidence 3333666777666 333 78999888765442121 1222223344445555555543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=94.35 E-value=4.9 Score=40.69 Aligned_cols=62 Identities=6% Similarity=0.062 Sum_probs=31.2
Q ss_pred EEEEeCCCCeEEEeecCCCCCCCceee-EEEEE-CCe-EEEecceeccccCccccccccCCcEEEEECC--CCcEEEeEe
Q 006384 274 LWSLDPRTWEWSKVKKIGMPPGPRAGF-SMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLD--NHRWYPLEL 348 (647)
Q Consensus 274 v~~yd~~t~~W~~v~~~g~~P~~R~~~-s~~~~-~~~-iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~--t~~W~~l~~ 348 (647)
+.+|++.+..+..+......|....+. .+++. +++ ||+.. ... .+.|.+|++. +.++..+..
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~-~~~------------~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN-RLK------------ADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE-CSS------------SCEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC-CCC------------CCEEEEEEEcCCCCcEEEeeE
Confidence 777777777776654432223222222 33333 454 44433 210 2457777764 667766654
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=2.4 Score=45.59 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=41.5
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
++.+|+|-| +..|+||..+++.....-.++|. --++..+.+++|+|-| +..|.
T Consensus 158 ~~~~yfFkG-------------~~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG-----------~~y~r 210 (460)
T 1qhu_A 158 DEGILFFQG-------------NRKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQG-----------NQFLR 210 (460)
T ss_dssp SSEEEEEET-------------TEEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEET-----------TEEEE
T ss_pred CCeEEEEec-------------ccEEEEecccceeecccCCCCCc---cchheeeCCceEEEEC-----------CEEEE
Confidence 678899988 46899999888766443333342 3456667899999988 35677
Q ss_pred EEcCCC
Q 006384 214 FDLDQF 219 (647)
Q Consensus 214 yD~~t~ 219 (647)
||..+.
T Consensus 211 fd~~~~ 216 (460)
T 1qhu_A 211 FNPVSG 216 (460)
T ss_dssp ECTTTC
T ss_pred EcCccC
Confidence 887543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=94.33 E-value=2.4 Score=40.83 Aligned_cols=191 Identities=7% Similarity=0.013 Sum_probs=98.7
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
+++++.+ ++.|||... + +.+++||+.......+.... ...-+.++.. ++.||+....
T Consensus 70 ~~i~~~~--~g~l~v~~~---~-------~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~~------- 127 (270)
T 1rwi_B 70 QGLAVDG--AGTVYVTDF---N-------NRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADRG------- 127 (270)
T ss_dssp CCEEECT--TCCEEEEET---T-------TEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEGG-------
T ss_pred ceeEECC--CCCEEEEcC---C-------CEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEECC-------
Confidence 4455554 456777643 1 36888998876555443211 1222334433 5678887532
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (647)
...+++|+..+.........+. ..-+.+++. +++||+.... .+.+++||+.+..-......
T Consensus 128 ----~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~~~~~~~~-- 189 (270)
T 1rwi_B 128 ----NNRVVKLAAGSKTQTVLPFTGL---NDPDGVAVDNSGNVYVTDTD---------NNRVVKLEAESNNQVVLPFT-- 189 (270)
T ss_dssp ----GTEEEEECTTCCSCEECCCCSC---CSCCCEEECTTCCEEEEEGG---------GTEEEEECTTTCCEEECCCS--
T ss_pred ----CCEEEEEECCCceeEeeccccC---CCceeEEEeCCCCEEEEECC---------CCEEEEEecCCCceEeeccc--
Confidence 2468888876665444322111 112234433 5678886542 24688999887654332211
Q ss_pred CCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CC
Q 006384 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (647)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~ 307 (647)
.. ..-.++++. ++.|||...... .+++|++....-...... ....-.++++- ++
T Consensus 190 ---~~-~~p~~i~~d~~g~l~v~~~~~~----------------~v~~~~~~~~~~~~~~~~----~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 190 ---DI-TAPWGIAVDEAGTVYVTEHNTN----------------QVVKLLAGSTTSTVLPFT----GLNTPLAVAVDSDR 245 (270)
T ss_dssp ---SC-CSEEEEEECTTCCEEEEETTTS----------------CEEEECTTCSCCEECCCC----SCSCEEEEEECTTC
T ss_pred ---CC-CCceEEEECCCCCEEEEECCCC----------------cEEEEcCCCCcceeeccC----CCCCceeEEECCCC
Confidence 11 112234444 457887664333 378888876543322111 11122334443 46
Q ss_pred eEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 308 ~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
.||+.... .+.|.+|++..
T Consensus 246 ~l~v~~~~--------------~~~v~~~~~~~ 264 (270)
T 1rwi_B 246 TVYVADRG--------------NDRVVKLTSLE 264 (270)
T ss_dssp CEEEEEGG--------------GTEEEEECCCG
T ss_pred CEEEEECC--------------CCEEEEEcCCC
Confidence 77776543 24577777653
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=8.9 Score=43.27 Aligned_cols=199 Identities=11% Similarity=-0.002 Sum_probs=98.7
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECC-EEEEEeCCcCCCC--CccccccCcEEEEECCCCcE--EEcccCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YLYIFGGEFTSPN--QERFHHYKDFWMLDLKTNQW--EQLNLKG 175 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~-~iyv~GG~~~~~~--~~~~~~~~dv~~yD~~t~~W--~~~~~~~ 175 (647)
..++++|+.+++...... +..+....+-. ++ .||...- ..... .........||++++.+..= ..+..
T Consensus 155 ~~i~v~dl~tg~~~~~~~---~~~k~~~~~Ws-Dg~~l~y~~~-~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~-- 227 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPL---KDVKFSGISWL-GNEGFFYSSY-DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG-- 227 (693)
T ss_dssp EEEEEEETTTCSEEEEEE---EEEESCCCEEE-TTTEEEEEES-SCCC-------CCCCEEEEEETTSCGGGCEEEES--
T ss_pred EEEEEEECCCCCCCcccc---CCceeccEEEe-CCCEEEEEEe-cCcccccccccCCCcEEEEEECCCCcccceEEEe--
Confidence 478999999998765421 11112222223 54 4444332 21100 00001235689988877642 12211
Q ss_pred CCC--CcceeEEE-EECCEEEEEecccCCCCceeeeCcEEEEEcCCC--ceEEeccCCCCCCCCCceeeeEEEeCCEEEE
Q 006384 176 CPS--PRSGHRMV-LYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFL 250 (647)
Q Consensus 176 ~P~--~R~~h~~~-~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv 250 (647)
.+. +....... .-+++.++|...... ..+.+|++|+.+. .|..+... ...... .....++.||+
T Consensus 228 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-----~~~~i~~~d~~~~~~~~~~l~~~-----~~~~~~-~~~~~g~~l~~ 296 (693)
T 3iuj_A 228 AIPAQHHRYVGATVTEDDRFLLISAANST-----SGNRLYVKDLSQENAPLLTVQGD-----LDADVS-LVDNKGSTLYL 296 (693)
T ss_dssp CSGGGCCSEEEEEECTTSCEEEEEEESSS-----SCCEEEEEETTSTTCCCEEEECS-----SSSCEE-EEEEETTEEEE
T ss_pred cCCCCCeEEEEEEEcCCCCEEEEEEccCC-----CCcEEEEEECCCCCCceEEEeCC-----CCceEE-EEeccCCEEEE
Confidence 121 22222222 224443333322111 1368999998766 78887654 112211 23345889998
Q ss_pred EecccCCCCCcccCCCCCceeeeEEEEeCCCC---eEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcccccc
Q 006384 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW---EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMS 327 (647)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~---~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~ 327 (647)
....+.. ...|+.+++.+. .|+.+.+. .+. .. +....++.|++..-...
T Consensus 297 ~t~~~~~-------------~~~l~~~d~~~~~~~~~~~l~~~--~~~--~~-~~s~~g~~lv~~~~~~g---------- 348 (693)
T 3iuj_A 297 LTNRDAP-------------NRRLVTVDAANPGPAHWRDLIPE--RQQ--VL-TVHSGSGYLFAEYMVDA---------- 348 (693)
T ss_dssp EECTTCT-------------TCEEEEEETTSCCGGGCEEEECC--CSS--CE-EEEEETTEEEEEEEETT----------
T ss_pred EECCCCC-------------CCEEEEEeCCCCCccccEEEecC--CCC--EE-EEEEECCEEEEEEEECC----------
Confidence 8754321 235888988653 48877542 111 22 44555666665443221
Q ss_pred ccCCcEEEEECCCCcEEEeE
Q 006384 328 LFLNELYGFQLDNHRWYPLE 347 (647)
Q Consensus 328 ~~~ndl~~yd~~t~~W~~l~ 347 (647)
...|+++++.......+.
T Consensus 349 --~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 349 --TARVEQFDYEGKRVREVA 366 (693)
T ss_dssp --EEEEEEECTTSCEEEEEC
T ss_pred --eeEEEEEECCCCeeEEee
Confidence 346888888765444443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.25 E-value=3.6 Score=40.42 Aligned_cols=169 Identities=13% Similarity=0.033 Sum_probs=82.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCC-cceeEEEEE-CCEEEEE----eCCcC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP-RSAHQAVSW-KNYLYIF----GGEFT 145 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~-R~~ha~v~~-~~~iyv~----GG~~~ 145 (647)
.++++.+ ++.||+... + .+.+++||+.+.+...+.......+ ..-..++.. ++.||+. |....
T Consensus 72 ~~l~~~~--dg~l~v~~~----~-----~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~ 140 (296)
T 3e5z_A 72 NGHCLNK--QGHLIACSH----G-----LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP 140 (296)
T ss_dssp EEEEECT--TCCEEEEET----T-----TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred ceeeECC--CCcEEEEec----C-----CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence 4455555 566776543 1 1368999998888776643210011 111122222 5788886 32100
Q ss_pred CC--CCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcC-CCce
Q 006384 146 SP--NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKW 221 (647)
Q Consensus 146 ~~--~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~-t~~W 221 (647)
.. ..........+|+|++. ++...+... . ....++++. ++++++.... .+.+++|++. +.+.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-~---~~~~gi~~s~dg~~lv~~~~---------~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 141 EEGYGGEMELPGRWVFRLAPD-GTLSAPIRD-R---VKPNGLAFLPSGNLLVSDTG---------DNATHRYCLNARGET 206 (296)
T ss_dssp GGSSCCCCCSSSCEEEEECTT-SCEEEEECC-C---SSEEEEEECTTSCEEEEETT---------TTEEEEEEECSSSCE
T ss_pred cccccccccCCCcEEEEECCC-CCEEEeecC-C---CCCccEEECCCCCEEEEeCC---------CCeEEEEEECCCCcC
Confidence 00 00000012479999987 555554321 1 111233332 4555544332 2578899886 4555
Q ss_pred -EEecc-CCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 222 -QEIKP-RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 222 -~~v~~-~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
..... .... ..| .+++.. ++.|||.. .. .|.+|++.......+.
T Consensus 207 ~~~~~~~~~~~--~~p---~~i~~d~~G~l~v~~--~~----------------~v~~~~~~g~~~~~~~ 253 (296)
T 3e5z_A 207 EYQGVHFTVEP--GKT---DGLRVDAGGLIWASA--GD----------------GVHVLTPDGDELGRVL 253 (296)
T ss_dssp EEEEEEECCSS--SCC---CSEEEBTTSCEEEEE--TT----------------EEEEECTTSCEEEEEE
T ss_pred cCCCeEeeCCC--CCC---CeEEECCCCCEEEEc--CC----------------eEEEECCCCCEEEEEE
Confidence 21111 1000 111 123343 67788776 22 3889999866555554
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.20 E-value=3.1 Score=41.88 Aligned_cols=175 Identities=7% Similarity=0.006 Sum_probs=89.4
Q ss_pred CcEEEEECCCCeEEE-ecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~-l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
..+..||+.+.+-.. +.... . ...+++.. ++.+++.|+.. ..+.+||+.+..-...-. ..
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~--~--~~~~~~~spdg~~l~~g~~d-----------g~v~i~~~~~~~~~~~~~---~~ 163 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGP--V--DAWTLAFSPDSQYLATGTHV-----------GKVNIFGVESGKKEYSLD---TR 163 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCT--T--CCCCEEECTTSSEEEEECTT-----------SEEEEEETTTCSEEEEEE---CS
T ss_pred CcEEEEECCCCCEEEEEeCCC--c--cEEEEEECCCCCEEEEEcCC-----------CcEEEEEcCCCceeEEec---CC
Confidence 367788888775432 22211 1 11122222 45666777642 457888887765332211 11
Q ss_pred CcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccC
Q 006384 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (647)
Q Consensus 179 ~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~ 256 (647)
...-.+++.. ++++++.|+.+ ..+.+||+.+.+-...-.. ....-.+++.. ++.+++.|+.++
T Consensus 164 ~~~v~~~~~spdg~~lasg~~d---------g~i~iwd~~~~~~~~~~~~------h~~~v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGAID---------GIINIFDIATGKLLHTLEG------HAMPIRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECC------CSSCCCEEEECTTSCEEEEECTTS
T ss_pred CceEEEEEECCCCCEEEEEcCC---------CeEEEEECCCCcEEEEEcc------cCCceeEEEEcCCCCEEEEEcCCC
Confidence 1111222222 56677777753 4588899887654322111 01111123333 667888888765
Q ss_pred CCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEE
Q 006384 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (647)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~ 335 (647)
. +.+||+.+......-. + ....-.++++. ++..++.|+.. ..|.+
T Consensus 229 ~----------------i~iwd~~~~~~~~~~~-~---h~~~v~~~~~sp~~~~l~s~s~D--------------~~v~i 274 (321)
T 3ow8_A 229 Y----------------IKIYDVQHANLAGTLS-G---HASWVLNVAFCPDDTHFVSSSSD--------------KSVKV 274 (321)
T ss_dssp C----------------EEEEETTTCCEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT--------------SCEEE
T ss_pred e----------------EEEEECCCcceeEEEc-C---CCCceEEEEECCCCCEEEEEeCC--------------CcEEE
Confidence 5 7788887655433211 1 11111223333 56677777643 35889
Q ss_pred EECCCCc
Q 006384 336 FQLDNHR 342 (647)
Q Consensus 336 yd~~t~~ 342 (647)
||+.+.+
T Consensus 275 wd~~~~~ 281 (321)
T 3ow8_A 275 WDVGTRT 281 (321)
T ss_dssp EETTTTE
T ss_pred EeCCCCE
Confidence 9987653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=94.19 E-value=1.2 Score=45.37 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=46.6
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
.+|.+|+.+.+++.+.......|+ .++.. +..||+.+....... .-.+|.++..++....+..... ..
T Consensus 30 ~~~~~d~~~g~~~~~~~~~~~~p~---~l~~spdg~~l~~~~~~~~~~~------~v~~~~~~~~~g~~~~~~~~~~-~~ 99 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDAEVANPS---YLIPSADGKFVYSVNEFSKDQA------AVSAFAFDKEKGTLHLLNTQKT-MG 99 (361)
T ss_dssp EEEEEETTTCCEEEEEEEECSCCC---SEEECTTSSEEEEEECCSSTTC------EEEEEEEETTTTEEEEEEEEEC-SS
T ss_pred EEEEEeCCCCCEEEeecccCCCCc---eEEECCCCCEEEEEEccCCCCC------cEEEEEEeCCCCcEEEeeEecc-CC
Confidence 466778888888766532111111 12222 345777665311110 1234666776677776654111 11
Q ss_pred cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 180 R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
...+..+.-++.||+... . -..+.+|++..
T Consensus 100 ~~p~~~~~dg~~l~~~~~-~--------~~~v~~~~~~~ 129 (361)
T 3scy_A 100 ADPCYLTTNGKNIVTANY-S--------GGSITVFPIGQ 129 (361)
T ss_dssp SCEEEEEECSSEEEEEET-T--------TTEEEEEEBCT
T ss_pred CCcEEEEECCCEEEEEEC-C--------CCEEEEEEeCC
Confidence 222223333334555432 1 24577888764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=94.12 E-value=1.1 Score=46.06 Aligned_cols=149 Identities=11% Similarity=-0.028 Sum_probs=73.2
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++.+++.|+.. ..|.+||+.+.+-...-. ...... .++++. +..+++.||.+ ..+
T Consensus 150 dg~~l~sgs~d-----------g~v~iwd~~~~~~~~~~~--~h~~~v-~~v~~s~~~~~~~~s~~~d---------g~v 206 (357)
T 4g56_B 150 DGTQAVSGGKD-----------FSVKVWDLSQKAVLKSYN--AHSSEV-NCVAACPGKDTIFLSCGED---------GRI 206 (357)
T ss_dssp SSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCSSCE-EEEEECTTCSSCEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc--CCCCCE-EEEEEccCCCceeeeeccC---------Cce
Confidence 45677777643 357889998876433221 111111 122222 23467777653 357
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
.+||+.+.+-....... .......+++.. ++.+++.|+.+.. +.+||+.+..-...-.
T Consensus 207 ~~wd~~~~~~~~~~~~~----~~~~~v~~v~~sp~~~~~la~g~~d~~----------------i~~wd~~~~~~~~~~~ 266 (357)
T 4g56_B 207 LLWDTRKPKPATRIDFC----ASDTIPTSVTWHPEKDDTFACGDETGN----------------VSLVNIKNPDSAQTSA 266 (357)
T ss_dssp EECCTTSSSCBCBCCCT----TCCSCEEEEEECTTSTTEEEEEESSSC----------------EEEEESSCGGGCEEEC
T ss_pred EEEECCCCceeeeeeec----cccccccchhhhhcccceEEEeecccc----------------eeEEECCCCcEeEEEe
Confidence 78888776533221110 111111222332 4567888876654 7788876543111110
Q ss_pred CCCCCCCceeeEEEEE-CC-eEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 290 IGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 290 ~g~~P~~R~~~s~~~~-~~-~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
+ . ...-.++++. ++ ++++.|+.+ ..|.+||+.+.+-
T Consensus 267 -~--~-~~~v~~l~~sp~~~~~lasgs~D--------------~~i~iwd~~~~~~ 304 (357)
T 4g56_B 267 -V--H-SQNITGLAYSYHSSPFLASISED--------------CTVAVLDADFSEV 304 (357)
T ss_dssp -C--C-SSCEEEEEECSSSSCCEEEEETT--------------SCEEEECTTSCEE
T ss_pred -c--c-ceeEEEEEEcCCCCCEEEEEeCC--------------CEEEEEECCCCcE
Confidence 0 1 1111223332 33 556666532 3488999887643
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.12 E-value=1.5 Score=44.96 Aligned_cols=152 Identities=11% Similarity=0.052 Sum_probs=75.3
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCCCc
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~~~ 150 (647)
+.+.| ++.+++.|+. + ..+.+||+.+.+-...-.. ....-..+.+ +..+++.|+..
T Consensus 133 v~~sp--dg~~l~sgs~--d-------~~i~iwd~~~~~~~~~~~~----h~~~V~~~~~~~~~~~~l~s~s~D------ 191 (344)
T 4gqb_B 133 VSVLS--SGTQAVSGSK--D-------ICIKVWDLAQQVVLSSYRA----HAAQVTCVAASPHKDSVFLSCSED------ 191 (344)
T ss_dssp EEECT--TSSEEEEEET--T-------SCEEEEETTTTEEEEEECC----CSSCEEEEEECSSCTTEEEEEETT------
T ss_pred EEECC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEcC----cCCceEEEEecCCCCCceeeeccc------
Confidence 44444 4566666662 2 3578888887754332111 1111122233 33577777653
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE---CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEE-ecc
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKP 226 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~-v~~ 226 (647)
..|.+||+.+.+-...-. .........++.+ ++++++.|+.+ ..|.+||+.+.+-.. +..
T Consensus 192 -----~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~l~sg~~d---------g~v~~wd~~~~~~~~~~~~ 255 (344)
T 4gqb_B 192 -----NRILLWDTRCPKPASQIG--CSAPGYLPTSLAWHPQQSEVFVFGDEN---------GTVSLVDTKSTSCVLSSAV 255 (344)
T ss_dssp -----SCEEEEETTSSSCEEECC------CCCEEEEEECSSCTTEEEEEETT---------SEEEEEESCC--CCEEEEC
T ss_pred -----cccccccccccceeeeee--cceeeccceeeeecCCCCcceEEeccC---------CcEEEEECCCCcEEEEEcC
Confidence 357889998776433211 1111111222332 45677777753 357888887654211 111
Q ss_pred CCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEE
Q 006384 227 RFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (647)
. ...-.+++.. +..+++.|+.++. +.+||..+..-.
T Consensus 256 h-------~~~v~~v~fsp~g~~~lasgs~D~~----------------i~vwd~~~~~~~ 293 (344)
T 4gqb_B 256 H-------SQCVTGLVFSPHSVPFLASLSEDCS----------------LAVLDSSLSELF 293 (344)
T ss_dssp C-------SSCEEEEEECSSSSCCEEEEETTSC----------------EEEECTTCCEEE
T ss_pred C-------CCCEEEEEEccCCCeEEEEEeCCCe----------------EEEEECCCCcEE
Confidence 1 1111223332 3356677776654 778888776543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=94.11 E-value=2.8 Score=43.95 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=88.6
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEc-ccCCCCCCc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQL-NLKGCPSPR 180 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~-~~~~~P~~R 180 (647)
.+.+||+.+.+....-.. .......+.+.+.+++.|+.. ..+.+||+.+..-... .. .....
T Consensus 194 ~i~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~l~s~s~d-----------g~i~vwd~~~~~~~~~~~~--~~~~~ 256 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTLIH----HCEAVLHLRFNNGMMVTCSKD-----------RSIAVWDMASPTDITLRRV--LVGHR 256 (435)
T ss_dssp CEEEEESSSCCEEEEECC----CCSCEEEEECCTTEEEEEETT-----------SCEEEEECSSSSCCEEEEE--ECCCS
T ss_pred eEEEEECCCCcEEEEEcC----CCCcEEEEEEcCCEEEEeeCC-----------CcEEEEeCCCCCCceeeeE--ecCCC
Confidence 678888887754432211 112223334455566777643 4578888876542211 11 01112
Q ss_pred ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCC
Q 006384 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (647)
Q Consensus 181 ~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~ 260 (647)
....++.+++.+++.|+.+ ..+.+||+.+.+-...-.. .. ....++..++.+++.|+.++.
T Consensus 257 ~~v~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~------~~-~~v~~~~~~~~~l~~g~~dg~--- 317 (435)
T 1p22_A 257 AAVNVVDFDDKYIVSASGD---------RTIKVWNTSTCEFVRTLNG------HK-RGIACLQYRDRLVVSGSSDNT--- 317 (435)
T ss_dssp SCEEEEEEETTEEEEEETT---------SEEEEEETTTCCEEEEEEC------CS-SCEEEEEEETTEEEEEETTSC---
T ss_pred CcEEEEEeCCCEEEEEeCC---------CeEEEEECCcCcEEEEEcC------CC-CcEEEEEeCCCEEEEEeCCCe---
Confidence 2223334466666666642 4688899887654322111 11 112233335667778877655
Q ss_pred cccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
+.+||+.+..-...-. .......++..++..++.|+.+ ..|.+||+.+
T Consensus 318 -------------i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~l~sg~~d--------------g~i~vwd~~~ 365 (435)
T 1p22_A 318 -------------IRLWDIECGACLRVLE-----GHEELVRCIRFDNKRIVSGAYD--------------GKIKVWDLVA 365 (435)
T ss_dssp -------------EEEEETTTCCEEEEEC-----CCSSCEEEEECCSSEEEEEETT--------------SCEEEEEHHH
T ss_pred -------------EEEEECCCCCEEEEEe-----CCcCcEEEEEecCCEEEEEeCC--------------CcEEEEECCC
Confidence 7888987654322211 1111223333477788887753 3588888643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.08 E-value=1.5 Score=50.10 Aligned_cols=194 Identities=10% Similarity=-0.009 Sum_probs=96.3
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
.++...| ++.++++|+. + ..+.+||..+.+....-... . .....+.+ ++..+++|+..
T Consensus 59 ~~~~~s~--~~~~l~~~~~--d-------g~i~vw~~~~~~~~~~~~~~---~-~~v~~~~~s~~~~~l~~~~~d----- 118 (814)
T 3mkq_A 59 RAGKFIA--RKNWIIVGSD--D-------FRIRVFNYNTGEKVVDFEAH---P-DYIRSIAVHPTKPYVLSGSDD----- 118 (814)
T ss_dssp EEEEEEG--GGTEEEEEET--T-------SEEEEEETTTCCEEEEEECC---S-SCEEEEEECSSSSEEEEEETT-----
T ss_pred EEEEEeC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEecC---C-CCEEEEEEeCCCCEEEEEcCC-----
Confidence 3445555 5666777762 2 36888998887665332211 1 11222333 35455566532
Q ss_pred ccccccCcEEEEECCCC-cEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 150 ERFHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~-~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
..+.+||+.++ .....-. .. ...-.+++.. ++.+++.|+.. ..+.+||+.+..-.....
T Consensus 119 ------g~i~vw~~~~~~~~~~~~~--~~-~~~v~~~~~~p~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~ 180 (814)
T 3mkq_A 119 ------LTVKLWNWENNWALEQTFE--GH-EHFVMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLT 180 (814)
T ss_dssp ------SEEEEEEGGGTSEEEEEEE--CC-SSCEEEEEEETTEEEEEEEEETT---------SEEEEEETTCSSCSEEEE
T ss_pred ------CEEEEEECCCCceEEEEEc--CC-CCcEEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCcceeEEe
Confidence 35778888765 2222211 11 1111223333 35677777653 468888886654322221
Q ss_pred CCCCCCCCCceeeeEEEe---CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEE
Q 006384 227 RFGSMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~ 303 (647)
. ........++.. ++.+++.|+.++. +.+||+.+..-...-.. .. ..-.+++
T Consensus 181 ~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~----------------i~~~d~~~~~~~~~~~~---~~-~~v~~~~ 235 (814)
T 3mkq_A 181 T-----GQERGVNYVDYYPLPDKPYMITASDDLT----------------IKIWDYQTKSCVATLEG---HM-SNVSFAV 235 (814)
T ss_dssp C-----CCTTCCCEEEECCSTTCCEEEEECTTSE----------------EEEEETTTTEEEEEEEC---CS-SCEEEEE
T ss_pred c-----CCCCCEEEEEEEECCCCCEEEEEeCCCE----------------EEEEECCCCcEEEEEcC---CC-CCEEEEE
Confidence 1 111112223332 5667777776544 78888876653332211 11 1112222
Q ss_pred EE-CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 304 ~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+. ++.+++.|+.. ..|.+||+.+.+
T Consensus 236 ~~~~~~~l~~~~~d--------------g~v~vwd~~~~~ 261 (814)
T 3mkq_A 236 FHPTLPIIISGSED--------------GTLKIWNSSTYK 261 (814)
T ss_dssp ECSSSSEEEEEETT--------------SCEEEEETTTCS
T ss_pred EcCCCCEEEEEeCC--------------CeEEEEECCCCc
Confidence 32 45667777642 347777777654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.06 E-value=1.3 Score=50.59 Aligned_cols=153 Identities=8% Similarity=0.003 Sum_probs=78.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
.++...| ++.++++|+. + +.+.+||..+......-... ...-.+++.. ++.++++|+..
T Consensus 17 ~~i~~sp--~~~~la~~~~--~-------g~v~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d------ 76 (814)
T 3mkq_A 17 KGIDFHP--TEPWVLTTLY--S-------GRVEIWNYETQVEVRSIQVT---ETPVRAGKFIARKNWIIVGSDD------ 76 (814)
T ss_dssp EEEEECS--SSSEEEEEET--T-------SEEEEEETTTTEEEEEEECC---SSCEEEEEEEGGGTEEEEEETT------
T ss_pred EEEEECC--CCCEEEEEeC--C-------CEEEEEECCCCceEEEEecC---CCcEEEEEEeCCCCEEEEEeCC------
Confidence 3455555 5667777762 2 36888998887654322211 1111222222 45566666642
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (647)
..+.+||..++.....-. ...... .+++.. ++..++.|+.. ..+.+||+.+. |..+....
T Consensus 77 -----g~i~vw~~~~~~~~~~~~--~~~~~v-~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~-~~~~~~~~- 137 (814)
T 3mkq_A 77 -----FRIRVFNYNTGEKVVDFE--AHPDYI-RSIAVHPTKPYVLSGSDD---------LTVKLWNWENN-WALEQTFE- 137 (814)
T ss_dssp -----SEEEEEETTTCCEEEEEE--CCSSCE-EEEEECSSSSEEEEEETT---------SEEEEEEGGGT-SEEEEEEE-
T ss_pred -----CeEEEEECCCCcEEEEEe--cCCCCE-EEEEEeCCCCEEEEEcCC---------CEEEEEECCCC-ceEEEEEc-
Confidence 468899998887544322 111111 122222 45556666642 35788888765 22222210
Q ss_pred CCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC
Q 006384 230 SMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (647)
Q Consensus 230 ~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (647)
.....-.+++.. ++.+++.|+.++. +.+||+.+.
T Consensus 138 ---~~~~~v~~~~~~p~~~~~l~~~~~dg~----------------v~vwd~~~~ 173 (814)
T 3mkq_A 138 ---GHEHFVMCVAFNPKDPSTFASGCLDRT----------------VKVWSLGQS 173 (814)
T ss_dssp ---CCSSCEEEEEEETTEEEEEEEEETTSE----------------EEEEETTCS
T ss_pred ---CCCCcEEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCC
Confidence 111112233333 4567777776554 778887543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.66 Score=47.79 Aligned_cols=190 Identities=9% Similarity=0.026 Sum_probs=95.9
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~~ 149 (647)
++.+.| ++.+++.|+. + ..+.+||+.+.+-...-.. ....-.++.+ +..+++.||..
T Consensus 144 ~v~~sp--dg~~l~sgs~--d-------g~v~iwd~~~~~~~~~~~~----h~~~v~~v~~s~~~~~~~~s~~~d----- 203 (357)
T 4g56_B 144 TLSVFS--DGTQAVSGGK--D-------FSVKVWDLSQKAVLKSYNA----HSSEVNCVAACPGKDTIFLSCGED----- 203 (357)
T ss_dssp EEEECS--SSSEEEEEET--T-------SCEEEEETTTTEEEEEECC----CSSCEEEEEECTTCSSCEEEEETT-----
T ss_pred EEEECC--CCCEEEEEeC--C-------CeEEEEECCCCcEEEEEcC----CCCCEEEEEEccCCCceeeeeccC-----
Confidence 344555 5667777762 2 3578889988765433211 1111222333 33577777643
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE---CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
..|.+||+.+.+-..... .........++.+ ++.+++.|+.. ..+.+||+.+.+-...-.
T Consensus 204 ------g~v~~wd~~~~~~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d---------~~i~~wd~~~~~~~~~~~ 266 (357)
T 4g56_B 204 ------GRILLWDTRKPKPATRID--FCASDTIPTSVTWHPEKDDTFACGDET---------GNVSLVNIKNPDSAQTSA 266 (357)
T ss_dssp ------SCEEECCTTSSSCBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESS---------SCEEEEESSCGGGCEEEC
T ss_pred ------CceEEEECCCCceeeeee--eccccccccchhhhhcccceEEEeecc---------cceeEEECCCCcEeEEEe
Confidence 347788887765322211 1111122223333 35677777643 457888987654322111
Q ss_pred CCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE
Q 006384 227 RFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~ 304 (647)
. ....-.+++.. +..+++.|+.++. +.+||+.+.+-... .+. . ..-.++++
T Consensus 267 ~------~~~~v~~l~~sp~~~~~lasgs~D~~----------------i~iwd~~~~~~~~~--~~H--~-~~V~~vaf 319 (357)
T 4g56_B 267 V------HSQNITGLAYSYHSSPFLASISEDCT----------------VAVLDADFSEVFRD--LSH--R-DFVTGVAW 319 (357)
T ss_dssp C------CSSCEEEEEECSSSSCCEEEEETTSC----------------EEEECTTSCEEEEE--CCC--S-SCEEEEEE
T ss_pred c------cceeEEEEEEcCCCCCEEEEEeCCCE----------------EEEEECCCCcEeEE--CCC--C-CCEEEEEE
Confidence 1 11111222322 3456677776654 77889887654433 211 1 11123333
Q ss_pred E--CCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 305 H--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 305 ~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
. ++.+++.||.+ ..|.+|++.+
T Consensus 320 sP~d~~~l~s~s~D--------------g~v~iW~~~~ 343 (357)
T 4g56_B 320 SPLDHSKFTTVGWD--------------HKVLHHHLPS 343 (357)
T ss_dssp CSSSTTEEEEEETT--------------SCEEEEECC-
T ss_pred eCCCCCEEEEEcCC--------------CeEEEEECCC
Confidence 2 56777877753 3478888654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=4.8 Score=44.18 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=57.7
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
++.+|+.+.. .+.+.++|..+.+-. .+... ..-|.++.. +..||+.+.- +.
T Consensus 148 ~~~~~vs~~~---------d~~V~v~D~~t~~~~~~i~~g-----~~~~~v~~spdg~~l~v~~~d------------~~ 201 (543)
T 1nir_A 148 PNLFSVTLRD---------AGQIALVDGDSKKIVKVIDTG-----YAVHISRMSASGRYLLVIGRD------------AR 201 (543)
T ss_dssp GGEEEEEEGG---------GTEEEEEETTTCCEEEEEECS-----TTEEEEEECTTSCEEEEEETT------------SE
T ss_pred CCEEEEEEcC---------CCeEEEEECCCceEEEEEecC-----cccceEEECCCCCEEEEECCC------------Ce
Confidence 6788888762 246888999887654 33222 114544343 4567776531 46
Q ss_pred EEEEEC--CCCcEEEcccCCCCCCcceeEEEEE-----CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEE
Q 006384 158 FWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLY-----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (647)
Q Consensus 158 v~~yD~--~t~~W~~~~~~~~P~~R~~h~~~~~-----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (647)
|.+||+ .+.+-.. . .+....-+.+++. +++.++++.+. .+.+.+||..+.+-..
T Consensus 202 V~v~D~~~~t~~~~~--~--i~~g~~p~~va~sp~~~~dg~~l~v~~~~--------~~~v~v~D~~t~~~~~ 262 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA--E--IKIGIEARSVESSKFKGYEDRYTIAGAYW--------PPQFAIMDGETLEPKQ 262 (543)
T ss_dssp EEEEETTSSSCEEEE--E--EECCSEEEEEEECCSTTCTTTEEEEEEEE--------SSEEEEEETTTCCEEE
T ss_pred EEEEECcCCCCcEEE--E--EecCCCcceEEeCCCcCCCCCEEEEEEcc--------CCeEEEEeccccccce
Confidence 899999 6654322 2 1222222233333 45444444432 3568888988766433
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.96 Score=45.08 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=47.8
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECC-CCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~-~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
..||+.++. -+.+++|++. +.++..+.... ....-+.++.. +..||+.+... ..+
T Consensus 5 ~~l~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~-----------~~v 62 (343)
T 1ri6_A 5 QTVYIASPE---------SQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPE-----------FRV 62 (343)
T ss_dssp EEEEEEEGG---------GTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTT-----------TEE
T ss_pred EEEEEeCCC---------CCeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecCC-----------CeE
Confidence 556666441 2467778774 44454332211 11112222222 34566655421 346
Q ss_pred EEEECC--CCcEEEcccCCCCCCcceeEEEEE-CC-EEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 159 WMLDLK--TNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 159 ~~yD~~--t~~W~~~~~~~~P~~R~~h~~~~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
.+|++. +.++..+... +....-..+++. ++ .||+.+.. -+.+.+||+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~---------~~~i~~~d~~ 114 (343)
T 1ri6_A 63 LAYRIAPDDGALTFAAES--ALPGSLTHISTDHQGQFVFVGSYN---------AGNVSVTRLE 114 (343)
T ss_dssp EEEEECTTTCCEEEEEEE--ECSSCCSEEEECTTSSEEEEEETT---------TTEEEEEEEE
T ss_pred EEEEecCCCCceeecccc--ccCCCCcEEEEcCCCCEEEEEecC---------CCeEEEEECC
Confidence 666655 7777766442 111122223332 34 45555432 1357778773
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=93.94 E-value=1.7 Score=43.35 Aligned_cols=108 Identities=4% Similarity=-0.103 Sum_probs=60.6
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCCCccccccCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
.+.+|+.++. -+.+.+||+.+.+........ .... .+.+ +..||+.+.. -..
T Consensus 9 ~~~~~v~~~~---------~~~v~~~d~~~~~~~~~~~~~----~~~~-~~~~s~dg~~l~~~~~~-----------~~~ 63 (331)
T 3u4y_A 9 SNFGIVVEQH---------LRRISFFSTDTLEILNQITLG----YDFV-DTAITSDCSNVVVTSDF-----------CQT 63 (331)
T ss_dssp CCEEEEEEGG---------GTEEEEEETTTCCEEEEEECC----CCEE-EEEECSSSCEEEEEEST-----------TCE
T ss_pred CCEEEEEecC---------CCeEEEEeCcccceeeeEEcc----CCcc-eEEEcCCCCEEEEEeCC-----------CCe
Confidence 5788888762 247899999998876543321 1112 3333 3457777652 147
Q ss_pred EEEEECCCCcE-E-EcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 158 FWMLDLKTNQW-E-QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 158 v~~yD~~t~~W-~-~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
+++||+.+... . .+.. ...+ .+++++. +.+|| .+...+ -...+++||+.+.+....
T Consensus 64 i~~~d~~~~~~~~~~~~~--~~~~--~~~~~~s~dg~~l~-~~~~~~------~~~~i~v~d~~~~~~~~~ 123 (331)
T 3u4y_A 64 LVQIETQLEPPKVVAIQE--GQSS--MADVDITPDDQFAV-TVTGLN------HPFNMQSYSFLKNKFIST 123 (331)
T ss_dssp EEEEECSSSSCEEEEEEE--CSSC--CCCEEECTTSSEEE-ECCCSS------SSCEEEEEETTTTEEEEE
T ss_pred EEEEECCCCceeEEeccc--CCCC--ccceEECCCCCEEE-EecCCC------CcccEEEEECCCCCeEEE
Confidence 99999988874 2 2222 1112 2213333 34566 332110 012799999988776544
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=93.93 E-value=1.3 Score=46.45 Aligned_cols=51 Identities=10% Similarity=-0.041 Sum_probs=27.2
Q ss_pred EEEEeCCCCeEEEeecCCCCCCCceeeEEEEE--CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 274 v~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
|.+||+.+..-...... .....+++.. ++.+++.+|..+ +.|.+||+.+.+
T Consensus 303 I~iwd~~t~~~~~~~~~-----~~~v~~~~~~~~~~~lv~~sg~~d-------------~~I~iwd~~~~~ 355 (420)
T 4gga_A 303 IRIWNVCSGACLSAVDA-----HSQVCSILWSPHYKELISGHGFAQ-------------NQLVIWKYPTMA 355 (420)
T ss_dssp EEEEETTTTEEEEEEEC-----SSCEEEEEEETTTTEEEEEECTTT-------------CCEEEEETTTCC
T ss_pred EEEEeCCccccceeecc-----ccceeeeeecCCCCeEEEEEecCC-------------CEEEEEECCCCc
Confidence 77888887765443321 1112233333 344555445432 569999987643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=93.85 E-value=1.4 Score=46.48 Aligned_cols=186 Identities=9% Similarity=0.039 Sum_probs=97.6
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
..++.+|+....-+.+.... .....+.+ ++..+++++.... ...++++|+.+++...+.. .+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~-----~~v~~~~~Spdg~~la~~s~~~~--------~~~i~~~d~~tg~~~~l~~--~~- 222 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFESG--------RSALVIQTLANGAVRQVAS--FP- 222 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES-----SCEEEEEECTTSSEEEEEECTTS--------SCEEEEEETTTCCEEEEEC--CS-
T ss_pred ceEEEEcCCCCCCEEEeCCC-----CcceeeEEcCCCCEEEEEEecCC--------CcEEEEEECCCCcEEEeec--CC-
Confidence 46778887765444443211 11122233 4555555553221 2579999999988776643 11
Q ss_pred CcceeEEEEE--CCE-EEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecc
Q 006384 179 PRSGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGY 254 (647)
Q Consensus 179 ~R~~h~~~~~--~~~-lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~ 254 (647)
... .++.+ +++ |++.+...+ ...|+++|+.+.+...+... +. ....++.. ++..+++++.
T Consensus 223 -~~~-~~~~~spdg~~la~~~~~~g-------~~~i~~~d~~~~~~~~l~~~-----~~--~~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 223 -RHN-GAPAFSPDGSKLAFALSKTG-------SLNLYVMDLASGQIRQVTDG-----RS--NNTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp -SCE-EEEEECTTSSEEEEEECTTS-------SCEEEEEETTTCCEEECCCC-----SS--CEEEEEECTTSSEEEEEEC
T ss_pred -Ccc-cCEEEcCCCCEEEEEEecCC-------CceEEEEECCCCCEEeCcCC-----CC--cccceEECCCCCEEEEEEC
Confidence 112 22333 444 554444322 24699999998877665433 11 11222222 4554445443
Q ss_pred cCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcE
Q 006384 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (647)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl 333 (647)
... ...+|.+|+.+..-..+.. ......++++. +++.+++++... -...|
T Consensus 287 ~~g-------------~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~~l~~~~~~~-----------g~~~i 337 (415)
T 2hqs_A 287 QAG-------------RPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGKFMVMVSSNG-----------GQQHI 337 (415)
T ss_dssp TTS-------------SCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSSEEEEEEECS-----------SCEEE
T ss_pred CCC-------------CcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCCEEEEEECcC-----------CceEE
Confidence 211 1358999988776444422 11222233332 566666665432 02469
Q ss_pred EEEECCCCcEEEeE
Q 006384 334 YGFQLDNHRWYPLE 347 (647)
Q Consensus 334 ~~yd~~t~~W~~l~ 347 (647)
+++|+.+.....+.
T Consensus 338 ~~~d~~~~~~~~l~ 351 (415)
T 2hqs_A 338 AKQDLATGGVQVLS 351 (415)
T ss_dssp EEEETTTCCEEECC
T ss_pred EEEECCCCCEEEec
Confidence 99999988876544
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=3 Score=46.59 Aligned_cols=121 Identities=10% Similarity=0.074 Sum_probs=65.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEEC-CCC--eEEEecCCCC---CCCcc---eeEEEE--ECCE----EEEEeCCcC
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDV-EKQ--EWKVISSPNS---PPPRS---AHQAVS--WKNY----LYIFGGEFT 145 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~-~~~--~W~~l~s~~~---P~~R~---~ha~v~--~~~~----iyv~GG~~~ 145 (647)
++.||+.+.. .+.|+++|. .+. .|+.-..... |.+++ ....++ .++. ||+...
T Consensus 62 ~g~vyv~~~~---------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~--- 129 (599)
T 1w6s_A 62 DGKMYIHTSF---------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL--- 129 (599)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---
T ss_pred CCEEEEEeCC---------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---
Confidence 7889987651 247899999 665 5886433210 00111 122344 4666 777532
Q ss_pred CCCCccccccCcEEEEECCCCc--EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--e
Q 006384 146 SPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--W 221 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W 221 (647)
-..++.+|..+++ |+.-.....+......+-++.++.||+-.+.... .....|+.||..+.+ |
T Consensus 130 ---------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~----g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 130 ---------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL----GVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp ---------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGG----TCCCEEEEEETTTCCEEE
T ss_pred ---------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEeccccc----CCCCeEEEEECCCCcEEE
Confidence 1468999998875 8753221000001122335568888764321110 023578999998765 8
Q ss_pred EEecc
Q 006384 222 QEIKP 226 (647)
Q Consensus 222 ~~v~~ 226 (647)
+.-..
T Consensus 197 ~~~~~ 201 (599)
T 1w6s_A 197 RAYAT 201 (599)
T ss_dssp EEESS
T ss_pred EEcCC
Confidence 76543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=93.79 E-value=2.8 Score=41.73 Aligned_cols=199 Identities=8% Similarity=0.014 Sum_probs=98.4
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeE--EEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W--~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~ 148 (647)
.+++.|. +..||+.+.. .+.+++||+.+.+. ..+.... .++ ++++.. +..|| .+.....
T Consensus 44 ~~~~s~d-g~~l~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~--~~~--~~~~~s~dg~~l~-~~~~~~~-- 106 (331)
T 3u4y_A 44 DTAITSD-CSNVVVTSDF---------CQTLVQIETQLEPPKVVAIQEGQ--SSM--ADVDITPDDQFAV-TVTGLNH-- 106 (331)
T ss_dssp EEEECSS-SCEEEEEEST---------TCEEEEEECSSSSCEEEEEEECS--SCC--CCEEECTTSSEEE-ECCCSSS--
T ss_pred eEEEcCC-CCEEEEEeCC---------CCeEEEEECCCCceeEEecccCC--CCc--cceEECCCCCEEE-EecCCCC--
Confidence 5566552 3457776651 13789999988764 3333222 222 212332 45566 3322110
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CC-EEEEEecccCCCCceeeeCc-EEEEEcCCCc-eEEe
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYND-LYVFDLDQFK-WQEI 224 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~-~lyv~GG~~~~~~~~~~~~d-v~~yD~~t~~-W~~v 224 (647)
...+++||+.+........ .....+.+++. ++ +||+.+.. .+. +++|++.... ....
T Consensus 107 ------~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~~~~---------~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 107 ------PFNMQSYSFLKNKFISTIP----IPYDAVGIAISPNGNGLILIDRS---------SANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp ------SCEEEEEETTTTEEEEEEE----CCTTEEEEEECTTSSCEEEEEET---------TTTEEEEEEECTTCCEEEE
T ss_pred ------cccEEEEECCCCCeEEEEE----CCCCccceEECCCCCEEEEEecC---------CCceEEEEEECCCCcEeec
Confidence 1379999999887654332 12222444443 33 57776543 134 6667655321 1111
Q ss_pred --ccCCCCCCCCCceeeeEEEe-CC-EEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeE----EEeecCCCCCCC
Q 006384 225 --KPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW----SKVKKIGMPPGP 296 (647)
Q Consensus 225 --~~~~~~~~P~~R~~~s~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W----~~v~~~g~~P~~ 296 (647)
... +....-..++.. ++ .||+.+.... .+.+||+.+.+. ..+.. +
T Consensus 168 ~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~~~----------------~v~v~d~~~~~~~~~~~~~~~-~----- 220 (331)
T 3u4y_A 168 GQEFI-----SGGTRPFNITFTPDGNFAFVANLIGN----------------SIGILETQNPENITLLNAVGT-N----- 220 (331)
T ss_dssp EEEEE-----CSSSSEEEEEECTTSSEEEEEETTTT----------------EEEEEECSSTTSCEEEEEEEC-S-----
T ss_pred CCccc-----cCCCCccceEECCCCCEEEEEeCCCC----------------eEEEEECCCCcccceeeeccC-C-----
Confidence 111 111112333333 33 5777664432 388889876654 22221 1
Q ss_pred ceeeEEEEE-CCe-EEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 297 RAGFSMCVH-KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 297 R~~~s~~~~-~~~-iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.....+++. +++ ||+.... .+.|++||+.+.+...+..
T Consensus 221 ~~~~~~~~spdg~~l~v~~~~--------------~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 221 NLPGTIVVSRDGSTVYVLTES--------------TVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp SCCCCEEECTTSSEEEEECSS--------------EEEEEEEETTTTEEEEEEE
T ss_pred CCCceEEECCCCCEEEEEEcC--------------CCEEEEEECCCCceeeecc
Confidence 111233343 444 6665432 2349999999887765554
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=93.75 E-value=2.2 Score=42.38 Aligned_cols=137 Identities=11% Similarity=-0.004 Sum_probs=65.2
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+.+||+.+........ ...... .++++. ++.+++.|+.+ ..+.+||+.+.+-...-..
T Consensus 195 ~~i~i~d~~~~~~~~~~~--~h~~~v-~~~~~s~~~~~l~s~s~D---------g~i~iwd~~~~~~~~~~~~------- 255 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHI--GHTGYL-NTVTVSPDGSLCASGGKD---------GQAMLWDLNEGKHLYTLDG------- 255 (340)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSSCE-EEEEECTTSSEEEEEETT---------CEEEEEETTTTEEEEEEEC-------
T ss_pred CEEEEEECCCCceeeEec--CCCCcE-EEEEECCCCCEEEEEeCC---------CeEEEEEeccCceeeeecC-------
Confidence 347788988776443321 111111 122222 56677777753 3577888876543222111
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCC----cee-eEEEEE-CCe
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGP----RAG-FSMCVH-KKR 308 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~----R~~-~s~~~~-~~~ 308 (647)
...-.+++...+..++.|+.++. +.+||+.+..-............ ... .++++. +++
T Consensus 256 ~~~v~~~~~~~~~~~~~~~~d~~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 256 GDIINALCFSPNRYWLCAATGPS----------------IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp SSCEEEEEECSSSSEEEEEETTE----------------EEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred CceEEeeecCCCCceeeccCCCE----------------EEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 11122333334555666665433 67778766543322111000000 111 122232 567
Q ss_pred EEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 309 iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
+++.||.+ ..|.+||+.++
T Consensus 320 ~l~sgs~D--------------g~v~iW~~~tG 338 (340)
T 4aow_A 320 TLFAGYTD--------------NLVRVWQVTIG 338 (340)
T ss_dssp EEEEEETT--------------SCEEEEEEEC-
T ss_pred EEEEEeCC--------------CEEEEEeCCCc
Confidence 77777643 34888888765
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=93.64 E-value=6.7 Score=39.51 Aligned_cols=133 Identities=11% Similarity=0.043 Sum_probs=67.5
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
.+..||+.+..-...-... ......+.+ ++.+++.|+.. ..+.+||+.+..-...-. ....
T Consensus 165 ~i~~wd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~sg~~d-----------~~v~~wd~~~~~~~~~~~--~h~~ 227 (340)
T 1got_B 165 TCALWDIETGQQTTTFTGH----TGDVMSLSLAPDTRLFVSGACD-----------ASAKLWDVREGMCRQTFT--GHES 227 (340)
T ss_dssp CEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCSEEEEEC--CCSS
T ss_pred cEEEEECCCCcEEEEEcCC----CCceEEEEECCCCCEEEEEeCC-----------CcEEEEECCCCeeEEEEc--CCcC
Confidence 5777888776544322111 111222233 46677777753 357888988765432211 1111
Q ss_pred cceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceee-eEEEe-CCEEEEEecccC
Q 006384 180 RSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGF-QFFVY-QDEVFLYGGYSK 256 (647)
Q Consensus 180 R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~-s~~~~-~~~Iyv~GG~~~ 256 (647)
.. .+++.. ++.+++.|+.+ ..+.+||+.+.+-...-.. +....+. +++.. ++.+++.|+.++
T Consensus 228 ~v-~~v~~~p~~~~l~s~s~d---------~~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~s~~g~~l~~g~~d~ 292 (340)
T 1got_B 228 DI-NAICFFPNGNAFATGSDD---------ATCRLFDLRADQELMTYSH-----DNIICGITSVSFSKSGRLLLAGYDDF 292 (340)
T ss_dssp CE-EEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECC-----TTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CE-EEEEEcCCCCEEEEEcCC---------CcEEEEECCCCcEEEEEcc-----CCcccceEEEEECCCCCEEEEECCCC
Confidence 11 122222 56677777753 3578889877643222111 1111112 22222 667777777655
Q ss_pred CCCCcccCCCCCceeeeEEEEeCCCC
Q 006384 257 EVSTDKNQSEKGIIHSDLWSLDPRTW 282 (647)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (647)
. +.+||..+.
T Consensus 293 ~----------------i~vwd~~~~ 302 (340)
T 1got_B 293 N----------------CNVWDALKA 302 (340)
T ss_dssp E----------------EEEEETTTC
T ss_pred e----------------EEEEEcccC
Confidence 4 778887654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.53 E-value=2.3 Score=43.18 Aligned_cols=146 Identities=8% Similarity=0.215 Sum_probs=73.3
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~ 150 (647)
++...| ++.+++.|+. + ..+..|+..+..+..+.... ........+.+ ++.+++.|+..
T Consensus 66 ~~~~sp--~g~~l~s~s~--D-------~~v~iw~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~l~s~s~D------ 126 (345)
T 3fm0_A 66 KVAWSP--CGNYLASASF--D-------ATTCIWKKNQDDFECVTTLE--GHENEVKSVAWAPSGNLLATCSRD------ 126 (345)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEEECCC-EEEEEEEC--CCSSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEECC--CCCEEEEEEC--C-------CcEEEEEccCCCeEEEEEcc--CCCCCceEEEEeCCCCEEEEEECC------
Confidence 445555 5667777772 2 25667777777665443211 11112223333 46677777643
Q ss_pred cccccCcEEEEECCCC-cEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 151 RFHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~-~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
..+.+||+.+. .+..+... .........+.+ ++.+++.|+.+ ..+.+||..+..|..+...
T Consensus 127 -----~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d---------~~i~~w~~~~~~~~~~~~~ 190 (345)
T 3fm0_A 127 -----KSVWVWEVDEEDEYECVSVL--NSHTQDVKHVVWHPSQELLASASYD---------DTVKLYREEEDDWVCCATL 190 (345)
T ss_dssp -----SCEEEEEECTTSCEEEEEEE--CCCCSCEEEEEECSSSSCEEEEETT---------SCEEEEEEETTEEEEEEEE
T ss_pred -----CeEEEEECCCCCCeEEEEEe--cCcCCCeEEEEECCCCCEEEEEeCC---------CcEEEEEecCCCEEEEEEe
Confidence 34777887654 23333221 111111122233 55677777753 3577888888887655443
Q ss_pred CCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 228 FGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
.. ....-.+++.. ++.+++.|+.++.
T Consensus 191 ~~----h~~~v~~l~~sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 191 EG----HESTVWSLAFDPSGQRLASCSDDRT 217 (345)
T ss_dssp CC----CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cC----CCCceEEEEECCCCCEEEEEeCCCe
Confidence 11 11111223332 5667777776654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=93.46 E-value=5.4 Score=39.13 Aligned_cols=123 Identities=10% Similarity=0.123 Sum_probs=60.6
Q ss_pred eEEEEeccCC-CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEe-cCCCCCCC-cceeEEEEE-CCEEEEEeCCcCCC
Q 006384 72 CSLNINPLKE-TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI-SSPNSPPP-RSAHQAVSW-KNYLYIFGGEFTSP 147 (647)
Q Consensus 72 ~s~~~~~~~~-~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l-~s~~~P~~-R~~ha~v~~-~~~iyv~GG~~~~~ 147 (647)
+++++.+ + +.|||.... +.+++||+. .+...+ .......+ ..-+.++.. ++.||+........
T Consensus 74 ~~i~~~~--~~g~l~v~~~~----------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~ 140 (314)
T 1pjx_A 74 AGCQCDR--DANQLFVADMR----------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVA 140 (314)
T ss_dssp EEEEECS--SSSEEEEEETT----------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCT
T ss_pred ceEEEec--CCCcEEEEECC----------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccc
Confidence 4455554 5 788886541 258899998 777665 32211111 112233333 57788875422100
Q ss_pred ----CCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-----CC-EEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 148 ----NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 148 ----~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-----~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
..........+++||+. .+...+... ... .+..++. ++ .||+.... .+.+++||+.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-~~~---~~~i~~~~~~d~dg~~l~v~~~~---------~~~i~~~~~~ 206 (314)
T 1pjx_A 141 PADYTRSMQEKFGSIYCFTTD-GQMIQVDTA-FQF---PNGIAVRHMNDGRPYQLIVAETP---------TKKLWSYDIK 206 (314)
T ss_dssp TSCCCBTTSSSCEEEEEECTT-SCEEEEEEE-ESS---EEEEEEEECTTSCEEEEEEEETT---------TTEEEEEEEE
T ss_pred cccccccccCCCCeEEEECCC-CCEEEeccC-CCC---cceEEEecccCCCCCEEEEEECC---------CCeEEEEECC
Confidence 00000112569999987 665544321 111 1233333 23 56765432 2568888875
Q ss_pred -CCce
Q 006384 218 -QFKW 221 (647)
Q Consensus 218 -t~~W 221 (647)
+.++
T Consensus 207 ~~g~~ 211 (314)
T 1pjx_A 207 GPAKI 211 (314)
T ss_dssp ETTEE
T ss_pred CCCcc
Confidence 3433
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.46 E-value=3.1 Score=42.52 Aligned_cols=106 Identities=12% Similarity=-0.008 Sum_probs=54.8
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE-E-CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-Y-KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-~-~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++.+++.|+.. ..|.+||+.+++-...-. ....... ++++ . +..+++.|+.+ ..|
T Consensus 138 dg~~l~sgs~d-----------~~i~iwd~~~~~~~~~~~--~h~~~V~-~~~~~~~~~~~l~s~s~D---------~~v 194 (344)
T 4gqb_B 138 SGTQAVSGSKD-----------ICIKVWDLAQQVVLSSYR--AHAAQVT-CVAASPHKDSVFLSCSED---------NRI 194 (344)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCSSCEE-EEEECSSCTTEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc--CcCCceE-EEEecCCCCCceeeeccc---------ccc
Confidence 46677777643 358889998875332211 1111111 1222 2 33577777753 357
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC
Q 006384 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (647)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (647)
.+||+.+.+-...-... .......+++.. ++.+++.|+.++. +.+||+.+.
T Consensus 195 ~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~l~sg~~dg~----------------v~~wd~~~~ 247 (344)
T 4gqb_B 195 LLWDTRCPKPASQIGCS----APGYLPTSLAWHPQQSEVFVFGDENGT----------------VSLVDTKST 247 (344)
T ss_dssp EEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSE----------------EEEEESCC-
T ss_pred ccccccccceeeeeecc----eeeccceeeeecCCCCcceEEeccCCc----------------EEEEECCCC
Confidence 88999877644322110 011111222222 5668888877654 778887654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=93.42 E-value=6.1 Score=38.38 Aligned_cols=185 Identities=9% Similarity=0.044 Sum_probs=94.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
+.+++.+. ++.|||.+.. ..+.+++||+.......+.... ...-+.++.. ++.|||....
T Consensus 80 ~~i~~~~~-~g~l~v~~~~--------~~~~i~~~d~~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~------- 140 (286)
T 1q7f_A 80 NRVAVVRN-SGDIIVTERS--------PTHQIQIYNQYGQFVRKFGATI---LQHPRGVTVDNKGRIIVVECK------- 140 (286)
T ss_dssp EEEEEETT-TTEEEEEECG--------GGCEEEEECTTSCEEEEECTTT---CSCEEEEEECTTSCEEEEETT-------
T ss_pred eEEEEEcC-CCeEEEEcCC--------CCCEEEEECCCCcEEEEecCcc---CCCceEEEEeCCCCEEEEECC-------
Confidence 44554222 5888887641 0246888996655544443321 1122333333 5678887542
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (647)
...+++||+.......+...+ ....-..+++- ++.||+.... .+.|++||+.......+...
T Consensus 141 ----~~~i~~~~~~g~~~~~~~~~~--~~~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~~~~~~~~~-- 203 (286)
T 1q7f_A 141 ----VMRVIIFDQNGNVLHKFGCSK--HLEFPNGVVVNDKQEIFISDNR---------AHCVKVFNYEGQYLRQIGGE-- 203 (286)
T ss_dssp ----TTEEEEECTTSCEEEEEECTT--TCSSEEEEEECSSSEEEEEEGG---------GTEEEEEETTCCEEEEESCT--
T ss_pred ----CCEEEEEcCCCCEEEEeCCCC--ccCCcEEEEECCCCCEEEEECC---------CCEEEEEcCCCCEEEEEccC--
Confidence 246889998765544443211 11112223333 5788886543 35689999865544444321
Q ss_pred CCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CC
Q 006384 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KK 307 (647)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~ 307 (647)
+.. ..-.++++. ++.|||...... ..+.+|++....-..+.... +. ...+++++- ++
T Consensus 204 g~~---~~p~~i~~d~~G~l~v~~~~~~---------------~~i~~~~~~g~~~~~~~~~~--~~-~~~~~i~~~~~g 262 (286)
T 1q7f_A 204 GIT---NYPIGVGINSNGEILIADNHNN---------------FNLTIFTQDGQLISALESKV--KH-AQCFDVALMDDG 262 (286)
T ss_dssp TTS---CSEEEEEECTTCCEEEEECSSS---------------CEEEEECTTSCEEEEEEESS--CC-SCEEEEEEETTT
T ss_pred Ccc---CCCcEEEECCCCCEEEEeCCCC---------------EEEEEECCCCCEEEEEcccC--CC-CcceeEEECCCC
Confidence 100 111233343 667888765432 13788887665444443311 11 122344444 67
Q ss_pred eEEEec
Q 006384 308 RALLFG 313 (647)
Q Consensus 308 ~iyifG 313 (647)
++|+..
T Consensus 263 ~l~vs~ 268 (286)
T 1q7f_A 263 SVVLAS 268 (286)
T ss_dssp EEEEEE
T ss_pred cEEEEC
Confidence 888773
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.35 E-value=3.8 Score=41.79 Aligned_cols=136 Identities=14% Similarity=0.008 Sum_probs=71.5
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEE-E--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-Y--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (647)
..+.+||+.+.+....-. ....... ++.+ . ++.+++.|+.+ ..+.+||+.+.+....-..
T Consensus 176 ~~v~lwd~~~~~~~~~~~--~h~~~v~-~~~~~~~~~g~~l~sgs~D---------g~v~~wd~~~~~~~~~~~~----- 238 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFH--GHGADVL-CLDLAPSETGNTFVSGGCD---------KKAMVWDMRSGQCVQAFET----- 238 (354)
T ss_dssp SEEEEEETTTCCEEEEEE--CCSSCEE-EEEECCCSSCCEEEEEETT---------SCEEEEETTTCCEEEEECC-----
T ss_pred CcEEEEeCCCCeEEEEEc--CCCCCeE-EEEEEeCCCCCEEEEEeCC---------CeEEEEECCCCcEEEEecC-----
Confidence 457888988876433211 1111111 1112 1 34677777753 4688899988765433211
Q ss_pred CCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE--CCeE
Q 006384 233 PSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRA 309 (647)
Q Consensus 233 P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~--~~~i 309 (647)
....-.+++.. ++.+++.|+.++. +.+||+.+..-..+-.. ........++.+ ++.+
T Consensus 239 -h~~~v~~v~~~p~~~~l~s~s~D~~----------------v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~ 298 (354)
T 2pbi_B 239 -HESDVNSVRYYPSGDAFASGSDDAT----------------CRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGRL 298 (354)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSE
T ss_pred -CCCCeEEEEEeCCCCEEEEEeCCCe----------------EEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCCE
Confidence 11111223333 5677788887665 77888877643332211 112223333333 5667
Q ss_pred EEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 310 yifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
++.|+.. ..|.+||+.+..
T Consensus 299 l~~g~~d--------------~~i~vwd~~~~~ 317 (354)
T 2pbi_B 299 LFAGYND--------------YTINVWDVLKGS 317 (354)
T ss_dssp EEEEETT--------------SCEEEEETTTCS
T ss_pred EEEEECC--------------CcEEEEECCCCc
Confidence 7776532 458999986654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=6.7 Score=44.31 Aligned_cols=150 Identities=12% Similarity=0.014 Sum_probs=81.2
Q ss_pred CcEEEEECCC------C--cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCC---ceEEe
Q 006384 156 KDFWMLDLKT------N--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF---KWQEI 224 (647)
Q Consensus 156 ~dv~~yD~~t------~--~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~---~W~~v 224 (647)
+.+|++|+.+ . .+..+... ...........++.||+.+.... ....|+.+|+.+. .|+.+
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~---~~~~~~~~s~dg~~l~~~s~~~~------~~~~l~~~d~~~~~~~~~~~l 329 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDN---FEGEYDYVTNEGTVFTFKTNRHS------PNYRLINIDFTDPEESKWKVL 329 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECS---SSSCEEEEEEETTEEEEEECTTC------TTCEEEEEETTSCCGGGCEEE
T ss_pred cEEEEEECcccccccCCccceEEeeCC---CCcEEEEEeccCCEEEEEECCCC------CCCEEEEEeCCCCCcccceec
Confidence 6899999876 4 57777542 11111222234678888865422 1357899998875 58887
Q ss_pred ccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe-EEEeecCCCCCCCceeeEE
Q 006384 225 KPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVKKIGMPPGPRAGFSM 302 (647)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~v~~~g~~P~~R~~~s~ 302 (647)
.+. .....-..++.. ++.|++...... ...++++++.+.. ...+.. | ...-.++
T Consensus 330 ~~~-----~~~~~~~~~~~~~~~~lv~~~~~~g--------------~~~l~~~~~~~g~~~~~l~~----~-~~~v~~~ 385 (710)
T 2xdw_A 330 VPE-----HEKDVLEWVACVRSNFLVLCYLHDV--------------KNTLQLHDLATGALLKIFPL----E-VGSVVGY 385 (710)
T ss_dssp ECC-----CSSCEEEEEEEETTTEEEEEEEETT--------------EEEEEEEETTTCCEEEEECC----C-SSEEEEE
T ss_pred cCC-----CCCCeEEEEEEEcCCEEEEEEEECC--------------EEEEEEEECCCCCEEEecCC----C-CceEEEE
Confidence 654 111122234445 677777665432 2458899985443 444431 2 1111111
Q ss_pred EEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCc--EEEeEe
Q 006384 303 CVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR--WYPLEL 348 (647)
Q Consensus 303 ~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~--W~~l~~ 348 (647)
+.- ++..++|...+. ..-..+|.||+.+++ ++.+..
T Consensus 386 ~~s~d~~~l~~~~ss~----------~~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 386 SGQKKDTEIFYQFTSF----------LSPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp ECCTTCSEEEEEEECS----------SCCCEEEEEETTSSSCCCEEEEE
T ss_pred ecCCCCCEEEEEEeCC----------CCCCEEEEEECCCCccceEEeee
Confidence 111 333333332211 124579999998877 666554
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=93.31 E-value=2.7 Score=40.15 Aligned_cols=149 Identities=15% Similarity=0.253 Sum_probs=79.8
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEE--ccc--CCCCCCcceeEEEEE--CCEEEEEecccCCC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQ--LNL--KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~--~~~--~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~ 202 (647)
+++...+.+|+|=| +.+|+++.....+.. +.. .++|. ... ++... ++++|+|-|
T Consensus 28 Ai~~~~g~~y~Fkg-------------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG----- 87 (207)
T 1pex_A 28 AITSLRGETMIFKD-------------RFFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRG----- 87 (207)
T ss_dssp EEEEETTEEEEEET-------------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEET-----
T ss_pred EEEeCCCcEEEEEC-------------CEEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEcc-----
Confidence 45557899999987 458888765544322 211 12342 222 33333 589999987
Q ss_pred CceeeeCcEEEEEcCCCce---EEeccCCCCCCCCCceeeeEE-Ee--CCEEEEEecccCCCCCcccCCCCCceeeeEEE
Q 006384 203 REVRYYNDLYVFDLDQFKW---QEIKPRFGSMWPSPRSGFQFF-VY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (647)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~W---~~v~~~~~~~~P~~R~~~s~~-~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (647)
+.+|+|+-.+..- ..|... .+|..-..--++ .. ++++|+|-|. ..|+
T Consensus 88 ------~~~w~~~~~~~~~gyPk~I~~~---GlP~~~~~IDAA~~~~~~gk~yfFkG~------------------~ywr 140 (207)
T 1pex_A 88 ------RKFWALNGYDILEGYPKKISEL---GLPKEVKKISAAVHFEDTGKTLLFSGN------------------QVWR 140 (207)
T ss_dssp ------TEEEEESTTCCCTTCSEESTTT---TCCTTCCCCCEEEECTTTSEEEEEETT------------------EEEE
T ss_pred ------CEEEEEeCCeeccCCceecccc---CCCCCCccccEEEEeCCCCEEEEEeCC------------------EEEE
Confidence 3467776332111 122211 123211112222 23 5899999773 3789
Q ss_pred EeCCCCeEEE-----eec--CCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 277 LDPRTWEWSK-----VKK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 277 yd~~t~~W~~-----v~~--~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
||..+.+-.. +.. .| .|. .. .++...++.+|+|-| +..|+||..+++=
T Consensus 141 ~d~~~~~~d~gyPr~i~~~~~G-ip~-~i-DaAf~~~g~~YfFkg----------------~~y~rf~~~~~~v 195 (207)
T 1pex_A 141 YDDTNHIMDKDYPRLIEEDFPG-IGD-KV-DAVYEKNGYIYFFNG----------------PIQFEYSIWSNRI 195 (207)
T ss_dssp EETTTTEECSSCCCBHHHHSTT-SCS-CC-SEEEEETTEEEEEET----------------TEEEEEETTTTEE
T ss_pred EeCcCccccCCCCccHHHcCCC-CCC-Cc-cEEEEcCCcEEEEEC----------------CEEEEEeCCccEE
Confidence 9987653210 000 01 121 12 233346899999977 3489999877653
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=93.31 E-value=2.4 Score=43.90 Aligned_cols=66 Identities=9% Similarity=-0.094 Sum_probs=37.0
Q ss_pred EEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEE
Q 006384 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 136 ~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~y 214 (647)
.+++.|+.. ..+.+||+.+......-..... ...-.+++.. ++.+++.|+.+ ..+.+|
T Consensus 145 ~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---------~~i~iw 203 (402)
T 2aq5_A 145 NVLLSAGCD-----------NVILVWDVGTGAAVLTLGPDVH-PDTIYSVDWSRDGALICTSCRD---------KRVRVI 203 (402)
T ss_dssp TEEEEEETT-----------SCEEEEETTTTEEEEEECTTTC-CSCEEEEEECTTSSCEEEEETT---------SEEEEE
T ss_pred CEEEEEcCC-----------CEEEEEECCCCCccEEEecCCC-CCceEEEEECCCCCEEEEEecC---------CcEEEE
Confidence 477777643 4588999988765433210011 1111222222 56677777642 468899
Q ss_pred EcCCCceE
Q 006384 215 DLDQFKWQ 222 (647)
Q Consensus 215 D~~t~~W~ 222 (647)
|+.+.+-.
T Consensus 204 d~~~~~~~ 211 (402)
T 2aq5_A 204 EPRKGTVV 211 (402)
T ss_dssp ETTTTEEE
T ss_pred eCCCCcee
Confidence 99886543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=7.5 Score=39.05 Aligned_cols=210 Identities=10% Similarity=0.056 Sum_probs=108.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCC----CCCc-ceeEEEEE--CCEEEEEeC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNS----PPPR-SAHQAVSW--KNYLYIFGG 142 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~----P~~R-~~ha~v~~--~~~iyv~GG 142 (647)
+.+++.+ ++.|||.... .+.+++|++... .-..+..... +... .-..+++. ++.|||..+
T Consensus 94 ~gia~d~--~g~l~v~d~~---------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~ 162 (329)
T 3fvz_A 94 HGLSIDT--DGNYWVTDVA---------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG 162 (329)
T ss_dssp EEEEECT--TSCEEEEETT---------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC
T ss_pred eEEEECC--CCCEEEEECC---------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC
Confidence 4556655 5668877651 246888888765 2223321100 0111 12233443 578999975
Q ss_pred CcCCCCCccccccCcEEEEECCCCcEEEcccCCC-----CCCcc-eeEEEEE-C-CEEEEEecccCCCCceeeeCcEEEE
Q 006384 143 EFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-----PSPRS-GHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 143 ~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~-----P~~R~-~h~~~~~-~-~~lyv~GG~~~~~~~~~~~~dv~~y 214 (647)
+. ...|++||+....-..+...+. +.... -+.+++- + +.|||.... .+.|.+|
T Consensus 163 ~~----------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~---------~~~I~~~ 223 (329)
T 3fvz_A 163 YC----------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE---------NGRIQCF 223 (329)
T ss_dssp SS----------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT---------TTEEEEE
T ss_pred CC----------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC---------CCEEEEE
Confidence 21 2568899965544444432111 11111 2334443 3 799997653 3578999
Q ss_pred EcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCC
Q 006384 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294 (647)
Q Consensus 215 D~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P 294 (647)
|+.+.+....-..+ .....-.+++...+.+|+..|.... .......++++++.+.+....-..+ ..
T Consensus 224 ~~~~G~~~~~~~~~----~~~~~~~~~~~~pg~~~~~~g~~~v---------~~~~~~~v~~~~~~~g~~~~~~~~~-~~ 289 (329)
T 3fvz_A 224 KTDTKEFVREIKHA----SFGRNVFAISYIPGFLFAVNGKPYF---------GDQEPVQGFVMNFSSGEIIDVFKPV-RK 289 (329)
T ss_dssp ETTTCCEEEEECCT----TTTTCEEEEEEETTEEEEEECCCCT---------TCSCCCCEEEEETTTCCEEEEECCS-SS
T ss_pred ECCCCcEEEEEecc----ccCCCcceeeecCCEEEEeCCCEEe---------ccCCCcEEEEEEcCCCeEEEEEcCC-CC
Confidence 99877665433221 1112222344445778887775322 0122346889998777655542210 01
Q ss_pred CCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECC
Q 006384 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD 339 (647)
Q Consensus 295 ~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~ 339 (647)
....-+++++- ++.|||.... .+.|++|++.
T Consensus 290 ~~~~p~~ia~~~dG~lyvad~~--------------~~~I~~~~~~ 321 (329)
T 3fvz_A 290 HFDMPHDIVASEDGTVYIGDAH--------------TNTVWKFTLT 321 (329)
T ss_dssp CCSSEEEEEECTTSEEEEEESS--------------SCCEEEEEEE
T ss_pred ccCCeeEEEECCCCCEEEEECC--------------CCEEEEEeCC
Confidence 11223344443 5678877543 3568888764
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=93.28 E-value=2.9 Score=39.92 Aligned_cols=148 Identities=16% Similarity=0.301 Sum_probs=79.6
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE--EecC--CCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK--VISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~--~l~s--~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~ 154 (647)
++++|+|=|. .+|+++.....+. .+.. +.+| ..--++... ++.||+|-|
T Consensus 33 ~g~~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~wp~Lp--~~iDAa~~~~~~~~iyfFkG------------ 87 (207)
T 1pex_A 33 RGETMIFKDR-----------FFWRLHPQQVDAELFLTKSFWPELP--NRIDAAYEHPSHDLIFIFRG------------ 87 (207)
T ss_dssp TTEEEEEETT-----------EEEEECSSSSCCEEEEHHHHCTTSC--SSCCEEEEETTTTEEEEEET------------
T ss_pred CCcEEEEECC-----------EEEEEeCCCcCCCceehhHhccCCC--CCccEEEEeccCCcEEEEcc------------
Confidence 6889998883 5777776554332 2211 1233 222233334 589999988
Q ss_pred cCcEEEEECCCCc---EEEcccCCCCCCc-ceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceE-----E
Q 006384 155 YKDFWMLDLKTNQ---WEQLNLKGCPSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-----E 223 (647)
Q Consensus 155 ~~dv~~yD~~t~~---W~~~~~~~~P~~R-~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-----~ 223 (647)
+.+|+|+..+.. =..+...++|..- .--+++.+ ++++|+|-| +..|+||..+.+-. .
T Consensus 88 -~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~~~~d~gyPr~ 155 (207)
T 1pex_A 88 -RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-----------NQVWRYDDTNHIMDKDYPRL 155 (207)
T ss_dssp -TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-----------TEEEEEETTTTEECSSCCCB
T ss_pred -CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-----------CEEEEEeCcCccccCCCCcc
Confidence 467888643221 1234333445321 12233333 479999987 45789998654211 0
Q ss_pred eccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE
Q 006384 224 IKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (647)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (647)
+.....+ +|. . -.++...++.+|+|-|. ..|+||..+.+-..
T Consensus 156 i~~~~~G-ip~-~-iDaAf~~~g~~YfFkg~------------------~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 156 IEEDFPG-IGD-K-VDAVYEKNGYIYFFNGP------------------IQFEYSIWSNRIVR 197 (207)
T ss_dssp HHHHSTT-SCS-C-CSEEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred HHHcCCC-CCC-C-ccEEEEcCCcEEEEECC------------------EEEEEeCCccEEec
Confidence 1000000 121 1 22333458999999774 27889887765443
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=93.25 E-value=5 Score=39.72 Aligned_cols=143 Identities=9% Similarity=0.042 Sum_probs=70.7
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEE-ecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~-l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
.++.+.| ++.+++.|+. + ..+..||..+..-.. +.... . .-.++... ++.+++.|+..
T Consensus 17 ~~~~fsp--~~~~l~s~~~--d-------g~v~lWd~~~~~~~~~~~~~~--~--~v~~~~~~~~~~~l~s~s~d----- 76 (304)
T 2ynn_A 17 KGIDFHP--TEPWVLTTLY--S-------GRVELWNYETQVEVRSIQVTE--T--PVRAGKFIARKNWIIVGSDD----- 76 (304)
T ss_dssp EEEEECS--SSSEEEEEET--T-------SEEEEEETTTTEEEEEEECCS--S--CEEEEEEEGGGTEEEEEETT-----
T ss_pred EEEEECC--CCCEEEEEcC--C-------CcEEEEECCCCceeEEeeccC--C--cEEEEEEeCCCCEEEEECCC-----
Confidence 3455566 6777777772 2 367888988775432 22111 1 11122222 45566666642
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
..+.+||+.+..-...-. + .. ..-.+++.. ++.+++.|+.+ ..+.+||+.+. +.......
T Consensus 77 ------~~i~vwd~~~~~~~~~~~-~-h~-~~v~~~~~~~~~~~l~sgs~D---------~~v~lWd~~~~-~~~~~~~~ 137 (304)
T 2ynn_A 77 ------FRIRVFNYNTGEKVVDFE-A-HP-DYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENN-WALEQTFE 137 (304)
T ss_dssp ------SEEEEEETTTCCEEEEEE-C-CS-SCEEEEEECSSSSEEEEEETT---------SCEEEEEGGGT-TEEEEEEC
T ss_pred ------CEEEEEECCCCcEEEEEe-C-CC-CcEEEEEEcCCCCEEEEECCC---------CeEEEEECCCC-cchhhhhc
Confidence 457888988775322111 1 11 111122222 45666677653 35778887664 22221110
Q ss_pred CCCCCCCceeeeEEEe--CCEEEEEecccCC
Q 006384 229 GSMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (647)
Q Consensus 229 ~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~ 257 (647)
.....-.+++.. ++.+++.|+.++.
T Consensus 138 ----~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 138 ----GHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp ----CCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred ----ccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 111112233333 4567888887655
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=93.24 E-value=7.3 Score=38.76 Aligned_cols=118 Identities=11% Similarity=0.045 Sum_probs=68.3
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCc
Q 006384 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEF 144 (647)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~ 144 (647)
|.+.....+++.+ ++.||+.--. .+.+++||+....-..+.. +..-+.++.. ++.|||.....
T Consensus 29 p~~~~pegia~~~--~g~lyv~d~~---------~~~I~~~d~~g~~~~~~~~-----~~~p~gia~~~dG~l~vad~~~ 92 (306)
T 2p4o_A 29 PVNTFLENLASAP--DGTIFVTNHE---------VGEIVSITPDGNQQIHATV-----EGKVSGLAFTSNGDLVATGWNA 92 (306)
T ss_dssp CTTCCEEEEEECT--TSCEEEEETT---------TTEEEEECTTCCEEEEEEC-----SSEEEEEEECTTSCEEEEEECT
T ss_pred CCCCCcceEEECC--CCCEEEEeCC---------CCeEEEECCCCceEEEEeC-----CCCceeEEEcCCCcEEEEeccC
Confidence 3345566677766 5678887531 1368999988753222222 1223444443 56788875321
Q ss_pred CCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
. -..+++||+.+.+...+.. .+..+.....+.+ ++.+|+.--. ...+|++|+.+.
T Consensus 93 ~---------~~~v~~~d~~~g~~~~~~~--~~~~~~~~g~~~~~~~~~~v~d~~---------~g~i~~~d~~~~ 148 (306)
T 2p4o_A 93 D---------SIPVVSLVKSDGTVETLLT--LPDAIFLNGITPLSDTQYLTADSY---------RGAIWLIDVVQP 148 (306)
T ss_dssp T---------SCEEEEEECTTSCEEEEEE--CTTCSCEEEEEESSSSEEEEEETT---------TTEEEEEETTTT
T ss_pred C---------cceEEEEcCCCCeEEEEEe--CCCccccCcccccCCCcEEEEECC---------CCeEEEEeCCCC
Confidence 0 1248899998888876654 2444554555544 4567765321 247899998764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=7.7 Score=43.39 Aligned_cols=158 Identities=9% Similarity=0.024 Sum_probs=79.0
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCC-----CcEEEcccCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT-----NQWEQLNLKG 175 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t-----~~W~~~~~~~ 175 (647)
..++++|+.+.+-..+.... . ........-+++.+++.. -..++++|+.+ +....+...+
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~--~-~~~~~~~SpdG~~la~~~------------~~~i~v~~~~~~~~~~g~~~~~~~~~ 165 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTN--E-ETASLDFSPVGDRVAYVR------------NHNLYIARGGKLGEGMSRAIAVTIDG 165 (706)
T ss_dssp TEEEEEETTTTEEEEEECCT--T-CCTTCEECTTSSEEEEEE------------TTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred CEEEEEECCCCceEEccCCc--c-cccCCcCCCCCCEEEEEE------------CCeEEEEecCcccccCCCcEEeccCC
Confidence 47899999998877665431 1 111111111343333331 14688899887 7666654422
Q ss_pred CCCCcc-----------eeEEEE-ECCEEEEEecccCCCCc------------------------eeeeCcEEEEEcCCC
Q 006384 176 CPSPRS-----------GHRMVL-YKHKIIVFGGFYDTLRE------------------------VRYYNDLYVFDLDQF 219 (647)
Q Consensus 176 ~P~~R~-----------~h~~~~-~~~~lyv~GG~~~~~~~------------------------~~~~~dv~~yD~~t~ 219 (647)
...... .+..+. -+++.++++.+...... ......++++|+.+.
T Consensus 166 ~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 166 TETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp BTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred CCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 110000 112222 25666666653221100 012357999999888
Q ss_pred ceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC-eEEEee
Q 006384 220 KWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW-EWSKVK 288 (647)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~-~W~~v~ 288 (647)
+-..+.... .....-..++.. +++.++++..+.. .....++++|+.+. .+..+.
T Consensus 246 ~~~~~~~~~----~~~~~~~~~~~spdg~~l~~~~~~~~-----------~~~~~v~~~d~~~g~~~~~~~ 301 (706)
T 2z3z_A 246 KTVYLQTGE----PKEKFLTNLSWSPDENILYVAEVNRA-----------QNECKVNAYDAETGRFVRTLF 301 (706)
T ss_dssp EEEECCCCS----CTTCEEEEEEECTTSSEEEEEEECTT-----------SCEEEEEEEETTTCCEEEEEE
T ss_pred ceEeeccCC----CCceeEeeEEEECCCCEEEEEEeCCC-----------CCeeEEEEEECCCCceeeEEE
Confidence 765554320 111222223332 5554555444332 23457999999887 776664
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=93.12 E-value=8.8 Score=39.36 Aligned_cols=105 Identities=8% Similarity=0.052 Sum_probs=55.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
++.++++|+. + +.+..||+.+..-...-.. ....-.+++.. ++.+++.|+.. ..+.
T Consensus 108 ~~~~l~~~~~--d-------g~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d-----------~~i~ 164 (420)
T 3vl1_A 108 QMRRFILGTT--E-------GDIKVLDSNFNLQREIDQA---HVSEITKLKFFPSGEALISSSQD-----------MQLK 164 (420)
T ss_dssp SSCEEEEEET--T-------SCEEEECTTSCEEEEETTS---SSSCEEEEEECTTSSEEEEEETT-----------SEEE
T ss_pred CCCEEEEEEC--C-------CCEEEEeCCCcceeeeccc---ccCccEEEEECCCCCEEEEEeCC-----------CeEE
Confidence 5667777762 2 3678889887765544221 11122222332 45566666642 4588
Q ss_pred EEECCCCcEEE-cccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 160 MLDLKTNQWEQ-LNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 160 ~yD~~t~~W~~-~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
+||+.+..-.. +.. . ...-.+++.. ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 165 iwd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 165 IWSVKDGSNPRTLIG---H-RATVTDIAIIDRGRNVLSASLD---------GTIRLWECGTGTT 215 (420)
T ss_dssp EEETTTCCCCEEEEC---C-SSCEEEEEEETTTTEEEEEETT---------SCEEEEETTTTEE
T ss_pred EEeCCCCcCceEEcC---C-CCcEEEEEEcCCCCEEEEEcCC---------CcEEEeECCCCce
Confidence 89987654211 111 1 1111222222 55666677653 3578888877653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.07 E-value=3.4 Score=42.21 Aligned_cols=133 Identities=14% Similarity=0.059 Sum_probs=68.3
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE----CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW----KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~----~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P 177 (647)
.+..||+.+.+....-... . ....++.+ ++.+++.|+.. ..+.+||+.+.+....-. ..
T Consensus 177 ~v~lwd~~~~~~~~~~~~h--~--~~v~~~~~~~~~~g~~l~sgs~D-----------g~v~~wd~~~~~~~~~~~--~h 239 (354)
T 2pbi_B 177 TCALWDVESGQLLQSFHGH--G--ADVLCLDLAPSETGNTFVSGGCD-----------KKAMVWDMRSGQCVQAFE--TH 239 (354)
T ss_dssp EEEEEETTTCCEEEEEECC--S--SCEEEEEECCCSSCCEEEEEETT-----------SCEEEEETTTCCEEEEEC--CC
T ss_pred cEEEEeCCCCeEEEEEcCC--C--CCeEEEEEEeCCCCCEEEEEeCC-----------CeEEEEECCCCcEEEEec--CC
Confidence 5777888776543221111 0 11112222 24677777753 458889998876543321 11
Q ss_pred CCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEec
Q 006384 178 SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGG 253 (647)
Q Consensus 178 ~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG 253 (647)
... -.++.+ ++.+++.|+.+ ..+.+||+.+..-..+-.. .....+...+.+ ++.+++.|+
T Consensus 240 ~~~--v~~v~~~p~~~~l~s~s~D---------~~v~lwd~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 240 ESD--VNSVRYYPSGDAFASGSDD---------ATCRLYDLRADREVAIYSK-----ESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp SSC--EEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEEEECC-----TTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCC--eEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcEEEEEcC-----CCcccceeEEEEeCCCCEEEEEE
Confidence 111 122333 56677777753 3578888877643322221 111122222222 567777777
Q ss_pred ccCCCCCcccCCCCCceeeeEEEEeCCCCe
Q 006384 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
.++. +.+||+.+..
T Consensus 304 ~d~~----------------i~vwd~~~~~ 317 (354)
T 2pbi_B 304 NDYT----------------INVWDVLKGS 317 (354)
T ss_dssp TTSC----------------EEEEETTTCS
T ss_pred CCCc----------------EEEEECCCCc
Confidence 6554 7788876543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=92.97 E-value=3.9 Score=46.66 Aligned_cols=110 Identities=11% Similarity=0.073 Sum_probs=65.1
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
++.|+|+||. .+-+++||+.+++++.+.....+......+++.. ++.||+-.. .-+.
T Consensus 482 ~g~lWi~~~t---------~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~-------------~Gl~ 539 (758)
T 3ott_A 482 EGNVWVLLYN---------NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFH-------------GGVM 539 (758)
T ss_dssp TSCEEEEETT---------CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEET-------------TEEE
T ss_pred CCCEEEEccC---------CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEec-------------CceE
Confidence 5789887662 1358999999999998753221111122222222 477886431 3488
Q ss_pred EEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 160 ~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
+||+.+..+......++|.. .-++++.-++.||+... +-+.+||+.+.+....
T Consensus 540 ~~~~~~~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t~-----------~Gl~~~~~~~~~~~~~ 592 (758)
T 3ott_A 540 RINPKDESQQSISFGSFSNN-EILSMTCVKNSIWVSTT-----------NGLWIIDRKTMDARQQ 592 (758)
T ss_dssp EECC--CCCCBCCCCC---C-CEEEEEEETTEEEEEES-----------SCEEEEETTTCCEEEC
T ss_pred EEecCCCceEEecccCCCcc-ceEEEEECCCCEEEECC-----------CCeEEEcCCCceeEEe
Confidence 99999888776643344432 23334445788887542 4589999998877654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=92.95 E-value=4.4 Score=40.06 Aligned_cols=103 Identities=15% Similarity=0.064 Sum_probs=54.7
Q ss_pred CEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCC
Q 006384 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKG 268 (647)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~ 268 (647)
+.+++.||.. ..+.+||+.+.+....-.. ....-.+++.. ++.+++.|+.++.
T Consensus 185 ~~~~~s~~~d---------~~i~i~d~~~~~~~~~~~~------h~~~v~~~~~s~~~~~l~s~s~Dg~----------- 238 (340)
T 4aow_A 185 NPIIVSCGWD---------KLVKVWNLANCKLKTNHIG------HTGYLNTVTVSPDGSLCASGGKDGQ----------- 238 (340)
T ss_dssp SCEEEEEETT---------SCEEEEETTTTEEEEEECC------CSSCEEEEEECTTSSEEEEEETTCE-----------
T ss_pred CcEEEEEcCC---------CEEEEEECCCCceeeEecC------CCCcEEEEEECCCCCEEEEEeCCCe-----------
Confidence 3455666642 3578888887654332211 11111223333 5677888877654
Q ss_pred ceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+.+||+.+..-...... ...-.+++...+..++.|+.. +.|.+||+.+..
T Consensus 239 -----i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~d--------------~~i~iwd~~~~~ 288 (340)
T 4aow_A 239 -----AMLWDLNEGKHLYTLDG-----GDIINALCFSPNRYWLCAATG--------------PSIKIWDLEGKI 288 (340)
T ss_dssp -----EEEEETTTTEEEEEEEC-----SSCEEEEEECSSSSEEEEEET--------------TEEEEEETTTTE
T ss_pred -----EEEEEeccCceeeeecC-----CceEEeeecCCCCceeeccCC--------------CEEEEEECCCCe
Confidence 77888876543332221 111223344445555666542 458889987654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.93 E-value=4.3 Score=40.85 Aligned_cols=158 Identities=9% Similarity=0.115 Sum_probs=78.1
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCC--CcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeC
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYN 209 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t--~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~ 209 (647)
++.+++.|+.. ..+.+||+.. ..+..+... ......-..+.+ ++.+++.|+.+ .
T Consensus 118 ~g~~las~s~D-----------~~v~iwd~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~l~s~s~D---------~ 175 (330)
T 2hes_X 118 DGYYLATCSRD-----------KSVWIWETDESGEEYECISVL--QEHSQDVKHVIWHPSEALLASSSYD---------D 175 (330)
T ss_dssp TSCEEEEEETT-----------SCEEEEECCTTCCCCEEEEEE--CCCSSCEEEEEECSSSSEEEEEETT---------S
T ss_pred CCCEEEEEeCC-----------CEEEEEeccCCCCCeEEEEEe--ccCCCceEEEEECCCCCEEEEEcCC---------C
Confidence 46666777643 3577888743 234433321 111111122333 55677777753 3
Q ss_pred cEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeC---CEEEEEecccCCCCCcccCCCCCceeeeEEEEeCC------
Q 006384 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQ---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR------ 280 (647)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~------ 280 (647)
.+.+||..+..|..+..... ....-.++.... +.+++.|+.++. +.+||+.
T Consensus 176 ~i~iW~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~s~D~~----------------v~iw~~~~~~~~~ 235 (330)
T 2hes_X 176 TVRIWKDYDDDWECVAVLNG----HEGTVWSSDFDKTEGVFRLCSGSDDST----------------VRVWKYMGDDEDD 235 (330)
T ss_dssp CEEEEEEETTEEEEEEEECC----CSSCEEEEEECCSSSSCEEEEEETTSC----------------EEEEEEEEECTTS
T ss_pred eEEEEECCCCCeeEEEEccC----CCCcEEEEEecCCCCeeEEEEEeCCCe----------------EEEEEecCCCccc
Confidence 56777777776766554411 111112222222 345666776554 3344432
Q ss_pred CCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 281 TWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 281 t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
...|..+..... .....-.+++...+.+++.||.. ..|.+||+.+..|..+..
T Consensus 236 ~~~~~~~~~~~~-~h~~~v~~v~~s~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~ 288 (330)
T 2hes_X 236 QQEWVCEAILPD-VHKRQVYNVAWGFNGLIASVGAD--------------GVLAVYEEVDGEWKVFAK 288 (330)
T ss_dssp CEEEEEEEECCS-CCSSCEEEEEECTTSCEEEEETT--------------SCEEEEEEETTEEEEEEE
T ss_pred cceeEEeeeccc-ccccceEEEEEcCCCEEEEEeCC--------------CEEEEEEcCCCceEEEec
Confidence 235655543211 01122233344455566666642 358889988888876543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.88 E-value=4.4 Score=40.41 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=36.5
Q ss_pred CCEEEEEecccCCCCceeeeCcEEEEEcCC-CceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCC
Q 006384 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSE 266 (647)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~ 266 (647)
++.+++.|+.. ..+.+||+.+ ..-...-.. ....-.+++.. ++.+++.|+.++.
T Consensus 186 ~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~--------- 241 (369)
T 3zwl_B 186 KGKYIIAGHKD---------GKISKYDVSNNYEYVDSIDL------HEKSISDMQFSPDLTYFITSSRDTN--------- 241 (369)
T ss_dssp GGCEEEEEETT---------SEEEEEETTTTTEEEEEEEC------CSSCEEEEEECTTSSEEEEEETTSE---------
T ss_pred CCCEEEEEcCC---------CEEEEEECCCCcEeEEEEec------CCCceeEEEECCCCCEEEEecCCce---------
Confidence 45566666642 4688999887 332221111 11112223333 5666777765543
Q ss_pred CCceeeeEEEEeCCCCeEEEe
Q 006384 267 KGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 267 ~~~~~~dv~~yd~~t~~W~~v 287 (647)
+.+||+.+......
T Consensus 242 -------i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 242 -------SFLVDVSTLQVLKK 255 (369)
T ss_dssp -------EEEEETTTCCEEEE
T ss_pred -------EEEEECCCCceeee
Confidence 78889877654443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=92.85 E-value=13 Score=42.06 Aligned_cols=195 Identities=13% Similarity=0.099 Sum_probs=96.8
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCC---CccccccCcEEEEECCCCcE--EEcccC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPN---QERFHHYKDFWMLDLKTNQW--EQLNLK 174 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~---~~~~~~~~dv~~yD~~t~~W--~~~~~~ 174 (647)
..++++|+.+++...... +...+..+.+ .++.++++....... .........||++++.+..- ..+..
T Consensus 189 ~~i~v~dl~tg~~~~~~~-----~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~- 262 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADEL-----KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA- 262 (741)
T ss_dssp EEEEEEETTTCCEEEEEE-----EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC-
T ss_pred EEEEEEECCCCCCCCccC-----CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec-
Confidence 369999999998765421 1111112222 223333333221100 00001235689999876642 12211
Q ss_pred CCCC-CcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCC--c-eEEeccCCCCCCCCCceeeeEEEeCCEEE
Q 006384 175 GCPS-PRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--K-WQEIKPRFGSMWPSPRSGFQFFVYQDEVF 249 (647)
Q Consensus 175 ~~P~-~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~-W~~v~~~~~~~~P~~R~~~s~~~~~~~Iy 249 (647)
.+. +........ -+++.+++....... ..+.+|++|+.+. . |..+... ....... +...++.||
T Consensus 263 -~~~~~~~~~~~~~SpDG~~l~~~~~~~~~----~~~~l~~~d~~~~~~~~~~~l~~~-----~~~~~~~-~~~dg~~l~ 331 (741)
T 1yr2_A 263 -TPELPKRGHGASVSSDGRWVVITSSEGTD----PVNTVHVARVTNGKIGPVTALIPD-----LKAQWDF-VDGVGDQLW 331 (741)
T ss_dssp -CTTCTTCEEEEEECTTSCEEEEEEECTTC----SCCEEEEEEEETTEECCCEEEECS-----SSSCEEE-EEEETTEEE
T ss_pred -cCCCCeEEEEEEECCCCCEEEEEEEccCC----CcceEEEEECCCCCCcccEEecCC-----CCceEEE-EeccCCEEE
Confidence 111 222222222 245444443322110 2468999999877 7 8888654 1122222 234577788
Q ss_pred EEecccCCCCCcccCCCCCceeeeEEEEeCCC--CeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcccccc
Q 006384 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMS 327 (647)
Q Consensus 250 v~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~ 327 (647)
+...... ....++++|+.+ ..|..+-+. ....-..++..++.|++......
T Consensus 332 ~~s~~~~-------------~~~~l~~~d~~~~~~~~~~l~~~----~~~~l~~~~~~~~~lv~~~~~dg---------- 384 (741)
T 1yr2_A 332 FVSGDGA-------------PLKKIVRVDLSGSTPRFDTVVPE----SKDNLESVGIAGNRLFASYIHDA---------- 384 (741)
T ss_dssp EEECTTC-------------TTCEEEEEECSSSSCEEEEEECC----CSSEEEEEEEEBTEEEEEEEETT----------
T ss_pred EEECCCC-------------CCCEEEEEeCCCCccccEEEecC----CCCeEEEEEEECCEEEEEEEECC----------
Confidence 7754321 124588999887 579888642 11122233445777777665432
Q ss_pred ccCCcEEEEECCCC
Q 006384 328 LFLNELYGFQLDNH 341 (647)
Q Consensus 328 ~~~ndl~~yd~~t~ 341 (647)
...||++++...
T Consensus 385 --~~~l~~~~~~g~ 396 (741)
T 1yr2_A 385 --KSQVLAFDLDGK 396 (741)
T ss_dssp --EEEEEEEETTSC
T ss_pred --EEEEEEEeCCCC
Confidence 345888887543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=92.84 E-value=9.8 Score=39.18 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=57.8
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
++.+++.|+.. ..+.+||+.+.+-...-. ... ..-.+++.. ++..++.|+.+ ..+.
T Consensus 134 dg~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~--~h~-~~v~~~~~~p~~~~l~s~s~d---------~~v~ 190 (393)
T 1erj_A 134 DGKFLATGAED-----------RLIRIWDIENRKIVMILQ--GHE-QDIYSLDYFPSGDKLVSGSGD---------RTVR 190 (393)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS-SCEEEEEECTTSSEEEEEETT---------SEEE
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCcEEEEEc--cCC-CCEEEEEEcCCCCEEEEecCC---------CcEE
Confidence 46677777643 458889998876433221 111 111222222 45555666642 4678
Q ss_pred EEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeE
Q 006384 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (647)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (647)
+||+.+.+....-.. .. ...+++.. ++.+++.|+.++. +.+||+.+..-
T Consensus 191 iwd~~~~~~~~~~~~-----~~--~v~~~~~~~~~~~~l~~~s~d~~----------------v~iwd~~~~~~ 241 (393)
T 1erj_A 191 IWDLRTGQCSLTLSI-----ED--GVTTVAVSPGDGKYIAAGSLDRA----------------VRVWDSETGFL 241 (393)
T ss_dssp EEETTTTEEEEEEEC-----SS--CEEEEEECSTTCCEEEEEETTSC----------------EEEEETTTCCE
T ss_pred EEECCCCeeEEEEEc-----CC--CcEEEEEECCCCCEEEEEcCCCc----------------EEEEECCCCcE
Confidence 889888765433222 11 11223332 5678888887665 77888876543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=92.74 E-value=2.7 Score=47.45 Aligned_cols=130 Identities=15% Similarity=0.227 Sum_probs=68.5
Q ss_pred CCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCC----------------c----ce
Q 006384 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP----------------R----SA 127 (647)
Q Consensus 68 ~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~----------------R----~~ 127 (647)
++.-.++...| +++.+++++.. ++.. ....++.+|+.+.+...+.......+ | ..
T Consensus 36 ~~~~~~~~~Sp--dG~~la~~~~~-d~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAP--DGSRVTFLRGK-DSDR--NQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp CCCCEEEEECT--TSSEEEEEECC-SSCT--TEEEEEEEETTTCCEEEEECGGGTC--------------------CCEE
T ss_pred CCCCCCceEec--CCCEEEEEecc-CCCC--cccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccC
Confidence 33444556666 66666666521 2211 13479999999998876654211010 0 11
Q ss_pred eEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCC---cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCC
Q 006384 128 HQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN---QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTL 202 (647)
Q Consensus 128 ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~---~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~ 202 (647)
...+.+ +++.++++.. ..++++|+.++ .-..+.. ...........-+++.++++..
T Consensus 111 v~~~~~SpDg~~l~~~~~------------~~i~~~d~~~~~~~~~~~l~~---~~~~~~~~~~SPDG~~la~~~~---- 171 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG------------GELYLYDLKQEGKAAVRQLTH---GEGFATDAKLSPKGGFVSFIRG---- 171 (741)
T ss_dssp SCCCEECTTSSEEEEEET------------TEEEEEESSSCSTTSCCBCCC---SSSCEEEEEECTTSSEEEEEET----
T ss_pred cceeEECCCCCEEEEEeC------------CcEEEEECCCCCcceEEEccc---CCcccccccCCCCCCEEEEEeC----
Confidence 122233 4555555432 47999999887 4433322 1111111122225665555531
Q ss_pred CceeeeCcEEEEEcCCCceEEeccC
Q 006384 203 REVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
+.|+++|+.+.+...+...
T Consensus 172 ------~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 172 ------RNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp ------TEEEEEETTTTEEEECCCC
T ss_pred ------CcEEEEecCCCCEEEeccC
Confidence 3699999998877766543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=4.9 Score=44.48 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=61.0
Q ss_pred eCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CC-EEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEE
Q 006384 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (647)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (647)
.+.++++|..+.....+... +.++.-|.+... ++ .+|+.... .+.+.++|+.+.+-.
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i-----~~~~~~~d~~~~pdgr~~~va~~~----------------sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEI-----SAERFLHDGGLDGSHRYFITAANA----------------RNKLVVIDTKEGKLV 377 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEE-----ECCSSEEEEEECTTSCEEEEEEGG----------------GTEEEEEETTTTEEE
T ss_pred CCeEEEEecCCCccceeeee-----eccccccCceECCCCCEEEEEeCC----------------CCeEEEEECCCCcEE
Confidence 36788888887665555544 445555555544 33 34443322 245889999988765
Q ss_pred EeecC-CCCCCCceeeEEEEE--CCeEEEecceeccccCccccccccCCcEEEEECCCCc-----EEEeEe
Q 006384 286 KVKKI-GMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR-----WYPLEL 348 (647)
Q Consensus 286 ~v~~~-g~~P~~R~~~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~-----W~~l~~ 348 (647)
..-.. +..|.+..+... +. .+.+|+.+-.. .+.|-++|..+.. |+.+..
T Consensus 378 ~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g-------------~~~Vsvid~~~~~~~~~~~kvv~~ 434 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMG-------------DDSVALIGTDPEGHPDNAWKILDS 434 (567)
T ss_dssp EEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSS-------------SSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEeccCcCCCCccceee-ECCCCCcEEEeCCCC-------------CCeEEEecCCCCCCccccCEEEEE
Confidence 54444 555655444432 34 35666654221 2458888877632 776654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=92.66 E-value=7.1 Score=38.53 Aligned_cols=185 Identities=11% Similarity=0.059 Sum_probs=92.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe--EEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
.+.+++.|.. -+.++.+|+.+.+ |+.-.. .....|.+... ++.||+.+. +.
T Consensus 4 ~~~~lv~~~~---------~~~v~~~d~~tG~~~w~~~~~----~~~~~~~~~~~pdG~ilvs~~-------------~~ 57 (276)
T 3no2_A 4 PQHLLVGGSG---------WNKIAIINKDTKEIVWEYPLE----KGWECNSVAATKAGEILFSYS-------------KG 57 (276)
T ss_dssp CCEEEEECTT---------CSEEEEEETTTTEEEEEEECC----TTCCCCEEEECTTSCEEEECB-------------SE
T ss_pred CCcEEEeeCC---------CCEEEEEECCCCeEEEEeCCC----ccCCCcCeEECCCCCEEEeCC-------------CC
Confidence 3677777762 2478899987764 664322 11122333333 677777321 45
Q ss_pred EEEEECCCC--cEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCC-ceEEeccCCCCCCC
Q 006384 158 FWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIKPRFGSMWP 233 (647)
Q Consensus 158 v~~yD~~t~--~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v~~~~~~~~P 233 (647)
|+.||+ ++ .|+.-. +.....+.+... ++.+++..... ...++.||+... .|+.-... ....+
T Consensus 58 V~~~d~-~G~~~W~~~~----~~~~~~~~~~~~~dG~~lv~~~~~--------~~~v~~vd~~Gk~l~~~~~~~-~~~~~ 123 (276)
T 3no2_A 58 AKMITR-DGRELWNIAA----PAGCEMQTARILPDGNALVAWCGH--------PSTILEVNMKGEVLSKTEFET-GIERP 123 (276)
T ss_dssp EEEECT-TSCEEEEEEC----CTTCEEEEEEECTTSCEEEEEEST--------TEEEEEECTTSCEEEEEEECC-SCSSG
T ss_pred EEEECC-CCCEEEEEcC----CCCccccccEECCCCCEEEEecCC--------CCEEEEEeCCCCEEEEEeccC-CCCcc
Confidence 888998 44 365332 211222333333 55665553310 135778887543 24432111 00001
Q ss_pred CCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC-CeEEEeecCCCCCCCceeeEEEEE-CCeEEE
Q 006384 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-WEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (647)
Q Consensus 234 ~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyi 311 (647)
...........++.+++...... .+.+||+.. ..|+.-.. ..| +++++. ++.+||
T Consensus 124 ~~~~~~v~~~~~G~~lv~~~~~~----------------~v~~~d~~G~~~w~~~~~--~~~-----~~~~~~~~g~~~v 180 (276)
T 3no2_A 124 HAQFRQINKNKKGNYLVPLFATS----------------EVREIAPNGQLLNSVKLS--GTP-----FSSAFLDNGDCLV 180 (276)
T ss_dssp GGSCSCCEECTTSCEEEEETTTT----------------EEEEECTTSCEEEEEECS--SCC-----CEEEECTTSCEEE
T ss_pred cccccCceECCCCCEEEEecCCC----------------EEEEECCCCCEEEEEECC--CCc-----cceeEcCCCCEEE
Confidence 11111112223556665544322 378898863 35665432 111 234444 677887
Q ss_pred ecceeccccCccccccccCCcEEEEECCCCc
Q 006384 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
++... +.|+.||+.+.+
T Consensus 181 ~~~~~--------------~~v~~~d~~tG~ 197 (276)
T 3no2_A 181 ACGDA--------------HCFVQLNLESNR 197 (276)
T ss_dssp ECBTT--------------SEEEEECTTTCC
T ss_pred EeCCC--------------CeEEEEeCcCCc
Confidence 76531 359999999765
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=92.34 E-value=6.2 Score=41.11 Aligned_cols=65 Identities=14% Similarity=0.006 Sum_probs=35.6
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++..++.|+.. ..+.+||+.+......-. .. .....++.+ ++.+++.|+.+ ..+
T Consensus 203 ~~~~l~s~s~D-----------~~i~~wd~~~~~~~~~~~--~h--~~~v~~~~~~~~g~~l~s~s~D---------~~v 258 (410)
T 1vyh_C 203 NGDHIVSASRD-----------KTIKMWEVQTGYCVKTFT--GH--REWVRMVRPNQDGTLIASCSND---------QTV 258 (410)
T ss_dssp SSSEEEEEETT-----------SEEEEEETTTCCEEEEEE--CC--SSCEEEEEECTTSSEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEe--CC--CccEEEEEECCCCCEEEEEcCC---------CeE
Confidence 45566666642 458889998776432211 11 111122222 56677777753 357
Q ss_pred EEEEcCCCceE
Q 006384 212 YVFDLDQFKWQ 222 (647)
Q Consensus 212 ~~yD~~t~~W~ 222 (647)
.+||+.+....
T Consensus 259 ~vwd~~~~~~~ 269 (410)
T 1vyh_C 259 RVWVVATKECK 269 (410)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcee
Confidence 77887766543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=92.33 E-value=11 Score=38.55 Aligned_cols=185 Identities=12% Similarity=0.049 Sum_probs=87.4
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcc-eeEEEEE---CCEEEEEeCCcCCCCCccccccCcEEEEECCCCc--EEEcccCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG 175 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~-~ha~v~~---~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~ 175 (647)
.+..||+.+..-...-....|.... ....+.+ ++.+++.|+.. ..+.+||+.... -..+..
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D-----------~~v~~wd~~~~~~~~~~~~~-- 247 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD-----------TTVRLWDLRITSRAVRTYHG-- 247 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT-----------SCEEEEETTTTCCCCEEECC--
T ss_pred cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC-----------CeEEEEECCCCCcceEEECC--
Confidence 5778888877654332211111111 1122222 46788888754 357788876321 111111
Q ss_pred CCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCc-eeeeEEEe-CCEEEEEe
Q 006384 176 CPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR-SGFQFFVY-QDEVFLYG 252 (647)
Q Consensus 176 ~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R-~~~s~~~~-~~~Iyv~G 252 (647)
...... +++.. ++.+++.|+.+ ..+.+||+.+..-...-........... .-.+++.. ++.+++.|
T Consensus 248 -h~~~v~-~v~~~p~~~~l~s~s~D---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 316 (380)
T 3iz6_a 248 -HEGDIN-SVKFFPDGQRFGTGSDD---------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG 316 (380)
T ss_dssp -CSSCCC-EEEECTTSSEEEEECSS---------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE
T ss_pred -cCCCeE-EEEEecCCCeEEEEcCC---------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEE
Confidence 111111 22222 56677777753 3588899887654333222100000001 11222222 66777777
Q ss_pred cccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe-ecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccC
Q 006384 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV-KKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFL 330 (647)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v-~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ 330 (647)
+.++. +.+||+.+..-... .........+. .++++. ++.+++.|+.+
T Consensus 317 ~~dg~----------------i~vwd~~~~~~~~~~~~~~~~h~~~v-~~l~~s~dg~~l~sgs~D-------------- 365 (380)
T 3iz6_a 317 YSNGD----------------CYVWDTLLAEMVLNLGTLQNSHEGRI-SCLGLSSDGSALCTGSWD-------------- 365 (380)
T ss_dssp CTTSC----------------EEEEETTTCCEEEEECCSCSSCCCCC-CEEEECSSSSEEEEECTT--------------
T ss_pred ECCCC----------------EEEEECCCCceEEEEecccCCCCCce-EEEEECCCCCEEEEeeCC--------------
Confidence 76554 78888766543322 11100011111 122222 67777888753
Q ss_pred CcEEEEECCCC
Q 006384 331 NELYGFQLDNH 341 (647)
Q Consensus 331 ndl~~yd~~t~ 341 (647)
..|.+|++...
T Consensus 366 ~~i~iW~~~~~ 376 (380)
T 3iz6_a 366 KNLKIWAFSGH 376 (380)
T ss_dssp SCEEEEECCSS
T ss_pred CCEEEEecCCC
Confidence 34777776543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.24 E-value=7.7 Score=37.80 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=53.3
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~ 152 (647)
++...| ++.+++.|+. + ..+..||+.+.+-....... .. ........+.+++.|+..
T Consensus 72 ~v~~~~--~~~~l~sgs~--D-------g~v~iw~~~~~~~~~~~~~h--~~--~~~~~~~~~~~l~s~~~~-------- 128 (318)
T 4ggc_A 72 SVAWIK--EGNYLAVGTS--S-------AEVQLWDVQQQKRLRNMTSH--SA--RVGSLSWNSYILSSGSRS-------- 128 (318)
T ss_dssp EEEECT--TSSEEEEEET--T-------SEEEEEETTTTEEEEEEECC--SS--CEEEEEEETTEEEEEETT--------
T ss_pred EEEECC--CCCEEEEEEC--C-------CcEEEeecCCceeEEEecCc--cc--eEEEeecCCCEEEEEecC--------
Confidence 344454 5667777772 2 35778888887644332211 11 122333345555665532
Q ss_pred cccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 153 HHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
..+..++..+.........+ .............+.+++.|+.+ ..+.+||+.+.+
T Consensus 129 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~ 183 (318)
T 4ggc_A 129 ---GHIHHHDVRVAEHHVATLSG-HSQEVCGLRWAPDGRHLASGGND---------NLVNVWPSAPGE 183 (318)
T ss_dssp ---SEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEEEEETT---------SCEEEEESSCBT
T ss_pred ---CceEeeecCCCceeEEEEcC-ccCceEEEEEcCCCCEEEEEecC---------cceeEEECCCCc
Confidence 33455555544332222111 11122222222355566666643 357788887643
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=92.19 E-value=13 Score=38.91 Aligned_cols=133 Identities=8% Similarity=0.086 Sum_probs=71.3
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..+.+||+.+..-...-. ...... .+++.. ++..++.|+.+ ..+.+||+.+.+-...-..
T Consensus 290 ~~i~vwd~~~~~~~~~~~--~~~~~v-~~~~~~~~~~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~------- 350 (464)
T 3v7d_B 290 NTLIVWDVAQMKCLYILS--GHTDRI-YSTIYDHERKRCISASMD---------TTIRIWDLENGELMYTLQG------- 350 (464)
T ss_dssp SCEEEEETTTTEEEEEEC--CCSSCE-EEEEEETTTTEEEEEETT---------SCEEEEETTTTEEEEEECC-------
T ss_pred CeEEEEECCCCcEEEEec--CCCCCE-EEEEEcCCCCEEEEEeCC---------CcEEEEECCCCcEEEEEeC-------
Confidence 458889998765433221 111122 222222 45566666643 4588999887653322111
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecc
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG 314 (647)
.......+.+.+..++.|+.++. +.+||+.+..-..... ........+...++.+++.|+
T Consensus 351 h~~~v~~~~~~~~~l~s~s~dg~----------------v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 351 HTALVGLLRLSDKFLVSAAADGS----------------IRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp CSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEEEEEE
T ss_pred CCCcEEEEEEcCCEEEEEeCCCc----------------EEEEECCCCceeeeec----CCCCccEEEEEeCCCEEEEec
Confidence 11112233445677777777654 7788887654222211 111223334445777777765
Q ss_pred eeccccCccccccccCCcEEEEECCCCc
Q 006384 315 VVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+ +.|.+||+.+.+
T Consensus 411 --d-------------g~i~iwd~~~g~ 423 (464)
T 3v7d_B 411 --E-------------NQFNIYNLRSGK 423 (464)
T ss_dssp --T-------------TEEEEEETTTCC
T ss_pred --C-------------CeEEEEECCCCc
Confidence 2 359999998765
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=92.10 E-value=11 Score=38.11 Aligned_cols=69 Identities=10% Similarity=0.001 Sum_probs=36.3
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC---cceeEEEEE--CCEEEEEecccCCCCceeee
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP---RSGHRMVLY--KHKIIVFGGFYDTLREVRYY 208 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~---R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~ 208 (647)
++ +++.|+.. ..+.+||+.+......-.. .+.. ...-.++.+ ++.+++.|+... ..
T Consensus 197 ~~-~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~-~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~------~~ 257 (397)
T 1sq9_A 197 RG-LIATGFNN-----------GTVQISELSTLRPLYNFES-QHSMINNSNSIRSVKFSPQGSLLAIAHDSN------SF 257 (397)
T ss_dssp TS-EEEEECTT-----------SEEEEEETTTTEEEEEEEC-CC---CCCCCEEEEEECSSTTEEEEEEEET------TE
T ss_pred Cc-eEEEEeCC-----------CcEEEEECCCCceeEEEec-cccccccCCccceEEECCCCCEEEEEecCC------CC
Confidence 45 66776642 4688999987754332220 0001 111222333 566677776431 02
Q ss_pred CcEEEEEcCCCce
Q 006384 209 NDLYVFDLDQFKW 221 (647)
Q Consensus 209 ~dv~~yD~~t~~W 221 (647)
..+.+||+.+.+-
T Consensus 258 g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 258 GCITLYETEFGER 270 (397)
T ss_dssp EEEEEEETTTCCE
T ss_pred ceEEEEECCCCcc
Confidence 4688999887653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=91.98 E-value=7.4 Score=38.50 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=57.2
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCe----EEEecCCCCCCCcceeEEEEE-CCE-EEEEeCCcC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE----WKVISSPNSPPPRSAHQAVSW-KNY-LYIFGGEFT 145 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~----W~~l~s~~~P~~R~~ha~v~~-~~~-iyv~GG~~~ 145 (647)
.++.+.| ++.+++.|+. + +.+.+|++.+.. ...+.. ....-.+++.. ++. +++.|+..
T Consensus 15 ~~~~~s~--~~~~l~~~~~--d-------~~v~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d- 78 (342)
T 1yfq_A 15 SDIKIIP--SKSLLLITSW--D-------GSLTVYKFDIQAKNVDLLQSLR----YKHPLLCCNFIDNTDLQIYVGTVQ- 78 (342)
T ss_dssp EEEEEEG--GGTEEEEEET--T-------SEEEEEEEETTTTEEEEEEEEE----CSSCEEEEEEEESSSEEEEEEETT-
T ss_pred EEEEEcC--CCCEEEEEcC--C-------CeEEEEEeCCCCccccceeeee----cCCceEEEEECCCCCcEEEEEcCC-
Confidence 4455555 4566666662 2 357777776655 333321 11122233332 556 66677642
Q ss_pred CCCCccccccCcEEEEEC-CCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 146 SPNQERFHHYKDFWMLDL-KTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~-~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
..+.+||+ .+.....+... +....-.+++...+.+++.|+.. ..+.+||+.+
T Consensus 79 ----------g~i~~wd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~l~s~~~d---------~~i~iwd~~~ 131 (342)
T 1yfq_A 79 ----------GEILKVDLIGSPSFQALTNN--EANLGICRICKYGDDKLIAASWD---------GLIEVIDPRN 131 (342)
T ss_dssp ----------SCEEEECSSSSSSEEECBSC--CCCSCEEEEEEETTTEEEEEETT---------SEEEEECHHH
T ss_pred ----------CeEEEEEeccCCceEecccc--CCCCceEEEEeCCCCEEEEEcCC---------CeEEEEcccc
Confidence 45889999 88876555431 01122222333335566666642 4577787764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=91.98 E-value=9.8 Score=37.52 Aligned_cols=154 Identities=6% Similarity=-0.015 Sum_probs=72.1
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
+.+++||+.+.+++.+.......+......+.+ ++.||+..-...............+|+|++.. ....+...
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~---- 147 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQ---- 147 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEE----
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeec----
Confidence 368999999998887654321112222222333 56777743111000000001124689998753 33333220
Q ss_pred CcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEc--CCCceEEeccCCCCCCCC-CceeeeEEEe-CCEEEEEe
Q 006384 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGSMWPS-PRSGFQFFVY-QDEVFLYG 252 (647)
Q Consensus 179 ~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~--~t~~W~~v~~~~~~~~P~-~R~~~s~~~~-~~~Iyv~G 252 (647)
......+++. +..||+.... .+.|++|++ .+.......... ..+. ...-.++++. ++.|||..
T Consensus 148 ~~~pngi~~spdg~~lyv~~~~---------~~~i~~~~~d~~~G~~~~~~~~~--~~~~~~~~p~g~~~d~~G~lwva~ 216 (297)
T 3g4e_A 148 VDISNGLDWSLDHKIFYYIDSL---------SYSVDAFDYDLQTGQISNRRSVY--KLEKEEQIPDGMCIDAEGKLWVAC 216 (297)
T ss_dssp ESBEEEEEECTTSCEEEEEEGG---------GTEEEEEEECTTTCCEEEEEEEE--ECCGGGCEEEEEEEBTTSCEEEEE
T ss_pred cccccceEEcCCCCEEEEecCC---------CCcEEEEeccCCCCcccCcEEEE--ECCCCCCCCCeeEECCCCCEEEEE
Confidence 1111233333 3468877543 356788876 455443211100 0011 1111234443 66788765
Q ss_pred cccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE
Q 006384 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (647)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (647)
.... .|++||+.+.+...
T Consensus 217 ~~~~----------------~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 217 YNGG----------------RVIRLDPVTGKRLQ 234 (297)
T ss_dssp ETTT----------------EEEEECTTTCCEEE
T ss_pred cCCC----------------EEEEEcCCCceEEE
Confidence 3222 38899998665443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.7 Score=53.09 Aligned_cols=199 Identities=11% Similarity=0.084 Sum_probs=98.4
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--C--CEEEEEeCCcCCCCCccccccCc
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K--NYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~--~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
+.+++.|+. + +.+.+||+.++.|..+.... ........+.+ . +.++++|+.. ..
T Consensus 67 ~~~l~s~s~--D-------g~I~vwd~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~~l~sgs~d-----------g~ 124 (753)
T 3jro_A 67 GTILASCSY--D-------GKVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSD-----------GK 124 (753)
T ss_dssp CSEEEEEET--T-------SCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT-----------SE
T ss_pred CCEEEEEeC--C-------CeEEEEECCCCccccccccc--CCCCCeEEEEECCCCCCCEEEEEeCC-----------Cc
Confidence 667777773 2 36888999998877554322 11222233333 2 5677777743 45
Q ss_pred EEEEECCCCcEEEc-ccCCCCCCcceeEEEEE--------------CCEEEEEecccCCCCceeeeCcEEEEEcCCC--c
Q 006384 158 FWMLDLKTNQWEQL-NLKGCPSPRSGHRMVLY--------------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--K 220 (647)
Q Consensus 158 v~~yD~~t~~W~~~-~~~~~P~~R~~h~~~~~--------------~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~ 220 (647)
+.+||+.+..-... ...+.+. .-.+++.. ++.+++.|+.+ ..+.+||+.+. .
T Consensus 125 I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d---------g~I~iwd~~~~~~~ 193 (753)
T 3jro_A 125 VSVVEFKENGTTSPIIIDAHAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQT 193 (753)
T ss_dssp EEEEECCSSSCCCCEEEECCSS--CEEEEEECCCC---------CGGGCCEEEEETT---------SCEEEEEEETTTTE
T ss_pred EEEEEeecCCCcceeEeecCCC--ceEEEEecCcccccccccccCCCCCEEEEEECC---------CeEEEEeccCCccc
Confidence 77888876521111 1000111 11112222 25667777653 35777777654 3
Q ss_pred eEEeccCCCCCCCCCceeeeEEEe-C---CEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe--EEEeecCCCCC
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVY-Q---DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPP 294 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~-~---~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~v~~~g~~P 294 (647)
+..+.... .....-.+++.. + +.+++.||.++. +.+||+.+.. +...... ...
T Consensus 194 ~~~~~~~~----~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~----------------I~iwd~~~~~~~~~~~~~~-~~~ 252 (753)
T 3jro_A 194 YVLESTLE----GHSDWVRDVAWSPTVLLRSYLASVSQDRT----------------CIIWTQDNEQGPWKKTLLK-EEK 252 (753)
T ss_dssp EEEEEEEC----CCSSCEEEEEECCCCSSSEEEEEEESSSC----------------EEEEEESSSSSCCBCCBSS-SSC
T ss_pred ceeeeeec----CCCCcEEEEEeccCCCCCCEEEEEecCCE----------------EEEecCCCCCCcceeEEec-cCC
Confidence 44433321 111122233333 3 688888887665 6677765531 1111110 000
Q ss_pred CCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCC-CcEEEeEe
Q 006384 295 GPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-HRWYPLEL 348 (647)
Q Consensus 295 ~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t-~~W~~l~~ 348 (647)
....-.++++. ++.+++.||.+ ..|.+|++.+ ..|..+..
T Consensus 253 ~~~~v~~l~~spdg~~l~s~s~D--------------g~I~vwd~~~~~~~~~~~~ 294 (753)
T 3jro_A 253 FPDVLWRASWSLSGNVLALSGGD--------------NKVTLWKENLEGKWEPAGE 294 (753)
T ss_dssp CSSCCCCEEECTTTCCEEEECSS--------------SCEECCBCCSSSCCBCCCC
T ss_pred CCCceEEEEEcCCCCEEEEEcCC--------------CEEEEEecCCCCCcccccc
Confidence 11111223333 56677777653 3488888774 46665543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=91.95 E-value=5.3 Score=41.29 Aligned_cols=112 Identities=15% Similarity=0.163 Sum_probs=61.7
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCcc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~ 151 (647)
++++.| ++.+++.|+. + ..+.+||+.+.+-...-... ...-.+++.. ++..++.|+..
T Consensus 128 ~v~~s~--dg~~l~s~~~--d-------~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s~s~d------- 186 (393)
T 1erj_A 128 SVCFSP--DGKFLATGAE--D-------RLIRIWDIENRKIVMILQGH---EQDIYSLDYFPSGDKLVSGSGD------- 186 (393)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC---SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEECC--CCCEEEEEcC--C-------CeEEEEECCCCcEEEEEccC---CCCEEEEEEcCCCCEEEEecCC-------
Confidence 455555 5677777773 2 36888999887654332211 1112222222 34555666542
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceE
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (647)
..+.+||+.+........ .. ..-..++.. ++.+++.|+.+ ..+.+||+.+..-.
T Consensus 187 ----~~v~iwd~~~~~~~~~~~--~~--~~v~~~~~~~~~~~~l~~~s~d---------~~v~iwd~~~~~~~ 242 (393)
T 1erj_A 187 ----RTVRIWDLRTGQCSLTLS--IE--DGVTTVAVSPGDGKYIAAGSLD---------RAVRVWDSETGFLV 242 (393)
T ss_dssp ----SEEEEEETTTTEEEEEEE--CS--SCEEEEEECSTTCCEEEEEETT---------SCEEEEETTTCCEE
T ss_pred ----CcEEEEECCCCeeEEEEE--cC--CCcEEEEEECCCCCEEEEEcCC---------CcEEEEECCCCcEE
Confidence 458888998876543322 11 111222222 56777777753 35788898876543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=11 Score=37.73 Aligned_cols=199 Identities=10% Similarity=0.005 Sum_probs=102.9
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCC--cEEEcccCCC-
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC- 176 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~~~- 176 (647)
+.++++|+.+.+........ .-..-+.+++. ++.||+.... ...|.+||+... .-..+...+.
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~--~~~~p~gia~d~~g~l~v~d~~-----------~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKN--LFYLPHGLSIDTDGNYWVTDVA-----------LHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp CCEEEECTTTCCEEEEECTT--TCSSEEEEEECTTSCEEEEETT-----------TTEEEEECTTCSSCCSEEESBTTBC
T ss_pred CcEEEEECCCCeEEeccCCC--ccCCceEEEECCCCCEEEEECC-----------CCEEEEEeCCCCeEEEEEecccCCC
Confidence 46999999877665332211 11122333333 5679987642 256889998765 2233322111
Q ss_pred ---CCCc-ceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCC--CCCce-eeeEEEe-C-
Q 006384 177 ---PSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW--PSPRS-GFQFFVY-Q- 245 (647)
Q Consensus 177 ---P~~R-~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~--P~~R~-~~s~~~~-~- 245 (647)
+... .-..+++. ++.||+..++. .+.|.+||+....-..+.....+.. +.... -+++++. +
T Consensus 136 g~~~~~~~~P~~ia~~~~~g~lyv~d~~~--------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~ 207 (329)
T 3fvz_A 136 GSDQNHFCQPTDVAVEPSTGAVFVSDGYC--------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL 207 (329)
T ss_dssp CCSTTCCSSEEEEEECTTTCCEEEEECSS--------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT
T ss_pred CCCccccCCCcEEEEeCCCCeEEEEeCCC--------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC
Confidence 1111 12233443 57899987531 2568889865443333322211000 11111 2344444 3
Q ss_pred CEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcccc
Q 006384 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVI 325 (647)
Q Consensus 246 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~ 325 (647)
+.|||...... .|.+|++.+.+....-.. ......-.++++..+.+|+..|.....
T Consensus 208 g~l~v~d~~~~----------------~I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~------ 263 (329)
T 3fvz_A 208 DQLCVADRENG----------------RIQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFLFAVNGKPYFG------ 263 (329)
T ss_dssp TEEEEEETTTT----------------EEEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEEEEEECCCCTT------
T ss_pred CEEEEEECCCC----------------EEEEEECCCCcEEEEEec--cccCCCcceeeecCCEEEEeCCCEEec------
Confidence 89999876543 388999986555443221 112222334555567777776643211
Q ss_pred ccccCCcEEEEECCCCcEEE
Q 006384 326 MSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 326 ~~~~~ndl~~yd~~t~~W~~ 345 (647)
....+.+++|++.+.+...
T Consensus 264 -~~~~~~v~~~~~~~g~~~~ 282 (329)
T 3fvz_A 264 -DQEPVQGFVMNFSSGEIID 282 (329)
T ss_dssp -CSCCCCEEEEETTTCCEEE
T ss_pred -cCCCcEEEEEEcCCCeEEE
Confidence 1223579999988876554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=91.86 E-value=12 Score=37.91 Aligned_cols=199 Identities=10% Similarity=0.009 Sum_probs=95.1
Q ss_pred EEEEEcCeecCCCcceeeCcEEEEECCCCe-------EEEecCCCCCCCcceeEEEEE-C----C---EEEEEeCCcCCC
Q 006384 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQE-------WKVISSPNSPPPRSAHQAVSW-K----N---YLYIFGGEFTSP 147 (647)
Q Consensus 83 ~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~-------W~~l~s~~~P~~R~~ha~v~~-~----~---~iyv~GG~~~~~ 147 (647)
.+++.|+. + ..+.+||+.+.. -..+.... .+ -.+++.. + + .+++.|+..
T Consensus 27 ~~l~s~~~--d-------g~i~iw~~~~~~~~~~~~~~~~~~~h~--~~--v~~~~~~~~~~~~g~~~~~l~s~~~d--- 90 (397)
T 1sq9_A 27 SFTVSCSG--D-------GYLKVWDNKLLDNENPKDKSYSHFVHK--SG--LHHVDVLQAIERDAFELCLVATTSFS--- 90 (397)
T ss_dssp SEEEEEET--T-------SEEEEEESBCCTTCCGGGGEEEEECCT--TC--EEEEEEEEEEETTTEEEEEEEEEETT---
T ss_pred CeEEEEcC--C-------CEEEEEECCCcccccCCCcceEEecCC--Cc--EEEEEEecccccCCccccEEEEEcCC---
Confidence 56666662 2 367888888765 33333211 11 1222222 3 5 777777643
Q ss_pred CCccccccCcEEEEECCCCc------EEEcccCCCCC-CcceeEEEEE-----CCEE-EEEecccCCCCceeeeCcEEEE
Q 006384 148 NQERFHHYKDFWMLDLKTNQ------WEQLNLKGCPS-PRSGHRMVLY-----KHKI-IVFGGFYDTLREVRYYNDLYVF 214 (647)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~------W~~~~~~~~P~-~R~~h~~~~~-----~~~l-yv~GG~~~~~~~~~~~~dv~~y 214 (647)
..+.+||+.+.. +..+....... ...-.+++.. ++.+ ++.|+.. ..+.+|
T Consensus 91 --------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iw 153 (397)
T 1sq9_A 91 --------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK---------GTTYIW 153 (397)
T ss_dssp --------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT---------SCEEEE
T ss_pred --------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC---------CcEEEE
Confidence 357788877766 66665421000 1222233333 3555 7777653 357777
Q ss_pred EcCC------Cc---eE---EeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC
Q 006384 215 DLDQ------FK---WQ---EIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (647)
Q Consensus 215 D~~t------~~---W~---~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (647)
|+.+ .. |. .+.............-.+++.. ++ +++.|+.++. +.+||+.+
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~----------------i~i~d~~~ 216 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT----------------VQISELST 216 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE----------------EEEEETTT
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc----------------EEEEECCC
Confidence 7765 22 11 1110000000111122233333 45 7777776544 88899887
Q ss_pred CeEEEeecCC--CCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 282 WEWSKVKKIG--MPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 282 ~~W~~v~~~g--~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
..-...-... ..+....-.++++. ++.+++.|+... ....|.+||+.+.+
T Consensus 217 ~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-----------~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 217 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-----------SFGCITLYETEFGE 269 (397)
T ss_dssp TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-----------TEEEEEEEETTTCC
T ss_pred CceeEEEeccccccccCCccceEEECCCCCEEEEEecCC-----------CCceEEEEECCCCc
Confidence 6544332210 00001122233333 567777777541 01358999987654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.82 E-value=2.8 Score=42.71 Aligned_cols=50 Identities=10% Similarity=-0.051 Sum_probs=26.5
Q ss_pred EEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 274 v~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
+.+||+.+..-...-. + ....-.++++. ++.+++.|+.. ..|.+||+.+.
T Consensus 316 i~v~d~~~~~~~~~~~-~---~~~~v~~~~~s~~~~~l~s~~~d--------------g~i~iw~~~~~ 366 (408)
T 4a11_B 316 IAVYTVYSGEQITMLK-G---HYKTVDCCVFQSNFQELYSGSRD--------------CNILAWVPSLY 366 (408)
T ss_dssp EEEEETTTCCEEEEEC-C---CSSCEEEEEEETTTTEEEEEETT--------------SCEEEEEECC-
T ss_pred EEEEECcCCcceeeec-c---CCCeEEEEEEcCCCCEEEEECCC--------------CeEEEEeCCCC
Confidence 7788876654333211 0 11112233444 56777777643 35888888764
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.78 E-value=3.3 Score=42.12 Aligned_cols=211 Identities=9% Similarity=0.073 Sum_probs=97.9
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEEC--CE-EEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NY-LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~--~~-iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P 177 (647)
..++.+|+.+.+...+... ........... +. |++... ... . .....+|++|+.+..+..+.. .
T Consensus 168 ~~l~~~d~~~g~~~~~~~~----~~~~~~~~~sp~dg~~l~~~~~-~~~-~----~~~~~l~~~d~~~~~~~~l~~---~ 234 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD----TAWLGHPIYRPFDDSTVGFCHE-GPH-D----LVDARMWLVNEDGSNVRKIKE---H 234 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEEC-SCS-S----SCSCCCEEEETTSCCCEESSC---C
T ss_pred ceEEEEECCCCcEEeeccC----CcccccceECCCCCCEEEEEec-CCC-C----CCCceEEEEECCCCceeEeec---c
Confidence 4789999999888776531 12222222222 44 444332 111 0 112579999998888777654 1
Q ss_pred CCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecc
Q 006384 178 SPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGY 254 (647)
Q Consensus 178 ~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~ 254 (647)
.+........+ +++.+++....... ....++++|+.+.+...+... +. .. ....- ++.++++++.
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~----~~~~l~~~d~~~g~~~~l~~~-----~~--~~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 235 AEGESCTHEFWIPDGSAMAYVSYFKGQ----TDRVIYKANPETLENEEVMVM-----PP--CS-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTT----CCEEEEEECTTTCCEEEEEEC-----CS--EE-EEEECSSSSEEEEEEC
T ss_pred CCCccccceEECCCCCEEEEEecCCCC----ccceEEEEECCCCCeEEeeeC-----CC--CC-CCccCCCCceEEEecC
Confidence 11212222233 45534444332211 113499999998887777554 21 11 12222 5666666543
Q ss_pred cCCCCCccc-CCCCCceeeeEEEEeCCCCeEEEeecCCCCC-----C-CceeeEEEEE-CCeEEEecceeccccCccccc
Q 006384 255 SKEVSTDKN-QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP-----G-PRAGFSMCVH-KKRALLFGGVVDMEMKGDVIM 326 (647)
Q Consensus 255 ~~~~~~~~~-~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P-----~-~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~ 326 (647)
. ....... ..........++++|+.+.....+....... . .......+.. +++.++|.....
T Consensus 303 ~-~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~--------- 372 (396)
T 3c5m_A 303 D-APVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE--------- 372 (396)
T ss_dssp C-C----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT---------
T ss_pred C-cceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC---------
Confidence 2 1000000 0000012246999999887766664321100 0 0001111222 454444443221
Q ss_pred cccCCcEEEEECCCCcEEEeEe
Q 006384 327 SLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 327 ~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
-...||.+++.+..++.+..
T Consensus 373 --~~~~l~~~~~~~~~~~~~~~ 392 (396)
T 3c5m_A 373 --GVPAIYIADVPESYKHLEHH 392 (396)
T ss_dssp --SSCEEEEEECCTTCC-----
T ss_pred --CCceEEEEEEcccccccccc
Confidence 12469999998887776543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=91.62 E-value=8.4 Score=38.03 Aligned_cols=193 Identities=10% Similarity=-0.001 Sum_probs=90.7
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEE-ecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCcc
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~-l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~ 151 (647)
+.+.| ++.+++.|+. + ..+..||+.+.+-.. +.. ....-.+++.. ++.+++.|+..
T Consensus 61 ~~~~~--~~~~l~s~s~--d-------~~i~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~sgs~D------- 118 (304)
T 2ynn_A 61 GKFIA--RKNWIIVGSD--D-------FRIRVFNYNTGEKVVDFEA----HPDYIRSIAVHPTKPYVLSGSDD------- 118 (304)
T ss_dssp EEEEG--GGTEEEEEET--T-------SEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSSEEEEEETT-------
T ss_pred EEEeC--CCCEEEEECC--C-------CEEEEEECCCCcEEEEEeC----CCCcEEEEEEcCCCCEEEEECCC-------
Confidence 34444 4566666762 2 367888888765332 211 11111222222 45566677643
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCC
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (647)
..+.+||+.++. ....... .....-.+++.. ++.+++.|+.+ ..+.+||+.+..-......
T Consensus 119 ----~~v~lWd~~~~~-~~~~~~~-~h~~~v~~v~~~p~~~~~l~sgs~D---------~~v~iwd~~~~~~~~~~~~-- 181 (304)
T 2ynn_A 119 ----LTVKLWNWENNW-ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLTT-- 181 (304)
T ss_dssp ----SCEEEEEGGGTT-EEEEEEC-CCCSCEEEEEECTTCTTEEEEEETT---------SEEEEEETTCSSCSEEEEC--
T ss_pred ----CeEEEEECCCCc-chhhhhc-ccCCcEEEEEECCCCCCEEEEEeCC---------CeEEEEECCCCCccceecc--
Confidence 357778876542 1111100 011111122222 34677777753 3577888765432111111
Q ss_pred CCCCCCceeeeEEEe---CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-
Q 006384 230 SMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH- 305 (647)
Q Consensus 230 ~~~P~~R~~~s~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~- 305 (647)
...+....+... ++.+++.|+.++. +.+||+.+..-...-. +. .. .-.++++.
T Consensus 182 ---~~~~~v~~~~~~~~~~~~~l~s~s~D~~----------------i~iWd~~~~~~~~~~~-~h--~~-~v~~~~~~p 238 (304)
T 2ynn_A 182 ---GQERGVNYVDYYPLPDKPYMITASDDLT----------------IKIWDYQTKSCVATLE-GH--MS-NVSFAVFHP 238 (304)
T ss_dssp ---CCTTCEEEEEECCSTTCCEEEEEETTSE----------------EEEEETTTTEEEEEEE-CC--SS-CEEEEEECS
T ss_pred ---CCcCcEEEEEEEEcCCCCEEEEEcCCCe----------------EEEEeCCCCccceeeC-CC--CC-CEEEEEECC
Confidence 111111122222 4456777776554 7788887764322211 11 11 11222333
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
++.+++.|+.. ..|.+||+.+.+
T Consensus 239 ~~~~l~s~s~D--------------g~i~iWd~~~~~ 261 (304)
T 2ynn_A 239 TLPIIISGSED--------------GTLKIWNSSTYK 261 (304)
T ss_dssp SSSEEEEEETT--------------SCEEEEETTTCC
T ss_pred CCCEEEEEcCC--------------CeEEEEECCCCc
Confidence 45667777643 358899987754
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=91.59 E-value=6 Score=37.22 Aligned_cols=148 Identities=13% Similarity=0.211 Sum_probs=80.8
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC--cEEE--ccc--CCCCCCcceeEEEEE--CCEEEEEecccC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQ--LNL--KGCPSPRSGHRMVLY--KHKIIVFGGFYD 200 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~--~~~--~~~P~~R~~h~~~~~--~~~lyv~GG~~~ 200 (647)
+++.+++.+|+|=| +.+|+|+.... .... +.. .++|.. --++... ++++|+|-|
T Consensus 11 Ai~~~~g~~yfFkg-------------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~--IDAa~~~~~~~~~yfFkG--- 72 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------------GKYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG--- 72 (195)
T ss_dssp EEEEETTEEEEEET-------------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET---
T ss_pred EEEEeCCEEEEEEC-------------CEEEEEECCccccCCCcEEhhhccCCCCCC--ccEEEEECCCCeEEEEeC---
Confidence 45567999999987 46888887552 2222 211 233432 2233333 678999988
Q ss_pred CCCceeeeCcEEEEEcCCCce-EEeccCCCCCCCCC--ceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEE
Q 006384 201 TLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSP--RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL 277 (647)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~--R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y 277 (647)
+.+|+|+..+..- ..|... .+|.. ....++...++++|+|-|. ..|+|
T Consensus 73 --------~~yw~~~~~~~~~Pk~i~~~---G~p~~~~~iDAA~~~~~g~~yfFkg~------------------~ywr~ 123 (195)
T 1itv_A 73 --------RQVWVYTGASVLGPRRLDKL---GLGADVAQVTGALRSGRGKMLLFSGR------------------RLWRF 123 (195)
T ss_dssp --------TEEEEEETTEEEEEEEGGGG---TCCTTCCCCCEEEECSTTEEEEEETT------------------EEEEE
T ss_pred --------CEEEEEcCCccCCCEEeeec---ccCCCccceeEEEEcCCCeEEEEeCC------------------EEEEE
Confidence 3467776542111 111111 12321 2333333237899999763 37899
Q ss_pred eCCCCeEEE-----ee-c-CCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 278 DPRTWEWSK-----VK-K-IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 278 d~~t~~W~~-----v~-~-~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
|..+.+-.. +. . .|. | ..-.++...++.+|+|-|. ..|.||..+.+
T Consensus 124 d~~~~~~~~gyPr~i~~~w~Gv-p--~~idaa~~~~g~~Yffkg~----------------~y~~~~~~~~~ 176 (195)
T 1itv_A 124 DVKAQMVDPRSASEVDRMFPGV-P--LDTHDVFQFREKAYFCQDR----------------FYWRVSSRSEL 176 (195)
T ss_dssp ETTTTEECGGGCEEHHHHSTTS-C--SSCSEEEEETTEEEEEETT----------------EEEEEECCTTC
T ss_pred eCCcccccCCCccChhhcCCCC-C--CCCCEEEEeCCeEEEEeCC----------------EEEEEECCccE
Confidence 987654211 10 0 111 2 1223444557999999873 47889887664
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=91.53 E-value=6.7 Score=39.03 Aligned_cols=121 Identities=11% Similarity=0.033 Sum_probs=60.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~ 150 (647)
.+++..+ ++.||+.+.. +.. ..+.+++||+.+.....+.... +....-..++.. ++.+|+........
T Consensus 90 ~~i~~~~--dg~l~v~~~~--~~~---~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~~--- 158 (333)
T 2dg1_A 90 AAIKIHK--DGRLFVCYLG--DFK---STGGIFAATENGDNLQDIIEDL-STAYCIDDMVFDSKGGFYFTDFRGYST--- 158 (333)
T ss_dssp EEEEECT--TSCEEEEECT--TSS---SCCEEEEECTTSCSCEEEECSS-SSCCCEEEEEECTTSCEEEEECCCBTT---
T ss_pred ceEEECC--CCcEEEEeCC--CCC---CCceEEEEeCCCCEEEEEEccC-ccCCcccceEECCCCCEEEEecccccc---
Confidence 3444444 5667766531 100 1136899999887665332111 111222223332 56788765321110
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CC-EEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
.....+|+||+.+.+...+... .......+.. ++ .||+.... .+.+++||+.+
T Consensus 159 --~~~~~l~~~~~~~~~~~~~~~~----~~~~~~i~~~~dg~~l~v~~~~---------~~~i~~~d~~~ 213 (333)
T 2dg1_A 159 --NPLGGVYYVSPDFRTVTPIIQN----ISVANGIALSTDEKVLWVTETT---------ANRLHRIALED 213 (333)
T ss_dssp --BCCEEEEEECTTSCCEEEEEEE----ESSEEEEEECTTSSEEEEEEGG---------GTEEEEEEECT
T ss_pred --CCCceEEEEeCCCCEEEEeecC----CCcccceEECCCCCEEEEEeCC---------CCeEEEEEecC
Confidence 0135799999988776655321 0111223332 33 57776432 25688898853
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=91.45 E-value=16 Score=41.44 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=81.7
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
++.|+|-.. +-+++||+.+.++..... . .+..-.+++..++.|||... +-+++
T Consensus 73 ~g~lWigT~-----------~Gl~~yd~~~~~f~~~~~-~--~~~~i~~i~~~~g~lWigt~-------------~Gl~~ 125 (758)
T 3ott_A 73 NTYLYMGTD-----------NGILVYNYRADRYEQPET-D--FPTDVRTMALQGDTLWLGAL-------------NGLYT 125 (758)
T ss_dssp TTEEEEEET-----------TEEEEEETTTTEECCCSC-C--CCSCEEEEEEETTEEEEEET-------------TEEEE
T ss_pred CCcEEEEeC-----------CCeEEEeCCCCEEECccc-C--CCceEEEEEecCCcEEEEcC-------------Cccee
Confidence 577776432 247899999987764211 1 11112233344788887432 35889
Q ss_pred EECCCCcEEEccc--CCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCce
Q 006384 161 LDLKTNQWEQLNL--KGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (647)
Q Consensus 161 yD~~t~~W~~~~~--~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (647)
||+.+.++..+.. .+.|.... .+++.. ++.|||.. .+.+++||+.+.++..+....... .....
T Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWigt-----------~~Gl~~~~~~~~~~~~~~~~~~~~-~~~~~ 192 (758)
T 3ott_A 126 YQLQSRKLTSFDTRRNGLPNNTI-YSIIRTKDNQIYVGT-----------YNGLCRYIPSNGKFEGIPLPVHSS-QSNLF 192 (758)
T ss_dssp EETTTCCEEEECHHHHCCSCSCE-EEEEECTTCCEEEEE-----------TTEEEEEETTTTEEEEECCCCCTT-CSSCC
T ss_pred EeCCCCeEEEeccCCCCcCCCeE-EEEEEcCCCCEEEEe-----------CCCHhhCccCCCceEEecCCCccc-cccce
Confidence 9999988887632 11222211 122222 67888732 134788999988877654321100 01111
Q ss_pred eeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 238 GFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 238 ~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
-.+++.. ++.|+| |- .. -+++|++.+.++....
T Consensus 193 i~~i~~d~~~~~lWi-gt-~~----------------Gl~~~~~~~~~~~~~~ 227 (758)
T 3ott_A 193 VNSLLEDTTRQCVWI-GT-EG----------------YLFQYFPSTGQIKQTE 227 (758)
T ss_dssp EEEEEEETTTTEEEE-EE-EE----------------EEEEEETTTTEEEEEE
T ss_pred eEEEEEECCCCEEEE-EE-CC----------------CCeEEcCCCCeEEecc
Confidence 2233333 235666 22 11 2789999988887654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=91.41 E-value=8.2 Score=40.09 Aligned_cols=95 Identities=12% Similarity=0.168 Sum_probs=54.9
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
+.|+++|..+++...+-... .....-.++.+ ++.+++.|+.. ..|.+||+.+.+-..... ...
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~--~~~~~V~sv~fspdg~~lasgs~D-----------g~v~iWd~~~~~~~~~~~--~h~ 189 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQME--QPGEYISSVAWIKEGNYLAVGTSS-----------AEVQLWDVQQQKRLRNMT--SHS 189 (420)
T ss_dssp TEEEEEETTTCCEEEEEECC--STTCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCS
T ss_pred CEEEEEECCCCCEEEEEEec--CCCCcEEEEEECCCCCEEEEEECC-----------CeEEEEEcCCCcEEEEEe--CCC
Confidence 47899999998776543321 12222334444 46677777643 458889998876433221 122
Q ss_pred CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
.+ ..++.+++.+++.|+.. ..+..+|......
T Consensus 190 ~~--v~~~s~~~~~l~sgs~d---------~~i~~~d~~~~~~ 221 (420)
T 4gga_A 190 AR--VGSLSWNSYILSSGSRS---------GHIHHHDVRVAEH 221 (420)
T ss_dssp SC--EEEEEEETTEEEEEETT---------SEEEEEETTSSSC
T ss_pred Cc--eEEEeeCCCEEEEEeCC---------CceeEeeecccce
Confidence 22 33455677777777753 3567777665443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=91.20 E-value=11 Score=41.75 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=63.5
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCC-CCcc---eeEEEEECCEEEEEeCCcCCCCCccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSP-PPRS---AHQAVSWKNYLYIFGGEFTSPNQERFHH 154 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P-~~R~---~ha~v~~~~~iyv~GG~~~~~~~~~~~~ 154 (647)
++.|||.... +.|+.+|..+. .|+.-...... .+.+ ..+.++.++.||+...
T Consensus 68 ~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------------ 125 (582)
T 1flg_A 68 DGVIYVTASY----------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------------ 125 (582)
T ss_dssp TTEEEEEETT----------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------------
T ss_pred CCEEEEEcCC----------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------------
Confidence 7899987662 24899999876 58865432110 0111 1234567888888532
Q ss_pred cCcEEEEECCCCc--EEEcccCCCCCCc--ceeEEEEECC------EEEEEecccCCCCceeeeCcEEEEEcCCCc--eE
Q 006384 155 YKDFWMLDLKTNQ--WEQLNLKGCPSPR--SGHRMVLYKH------KIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQ 222 (647)
Q Consensus 155 ~~dv~~yD~~t~~--W~~~~~~~~P~~R--~~h~~~~~~~------~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~ 222 (647)
-..++.+|..+++ |+.-.. .+... ...+-++.++ .||+ |.... +......|+.||+.+.+ |+
T Consensus 126 dg~l~AlD~~TG~~~W~~~~~--~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~---e~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 126 DASVVALNKNTGKVVWKKKFA--DHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGD---EFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp TTEEEEEESSSCCEEEEEECS--CGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCG---GGCCBCEEEEECTTTCCEEEE
T ss_pred CCEEEEEECCCCCEEeeecCC--CCCcCcccccCCEEeCCCcCCcEEEEE-ecccc---ccCCCCEEEEEECCCCCEEee
Confidence 1468999998884 875432 11111 1112244555 5554 33111 00124579999998765 86
Q ss_pred E
Q 006384 223 E 223 (647)
Q Consensus 223 ~ 223 (647)
.
T Consensus 200 ~ 200 (582)
T 1flg_A 200 R 200 (582)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=91.20 E-value=12 Score=37.76 Aligned_cols=219 Identities=13% Similarity=0.107 Sum_probs=105.0
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
+++.++|... .++ ...+|.+|+.+.+.+.+.... ..........-+++.++|+.. -..+++
T Consensus 46 Dg~~l~~~~~-~~g-----~~~l~~~d~~~g~~~~lt~~~--~~~~~~~~~spdg~~l~~~~~-----------~~~l~~ 106 (388)
T 3pe7_A 46 DGSKLLFGGA-FDG-----PWNYYLLDLNTQVATQLTEGR--GDNTFGGFLSPDDDALFYVKD-----------GRNLMR 106 (388)
T ss_dssp TSCEEEEEEC-TTS-----SCEEEEEETTTCEEEECCCSS--CBCSSSCEECTTSSEEEEEET-----------TTEEEE
T ss_pred CCCEEEEEEc-CCC-----CceEEEEeCCCCceEEeeeCC--CCCccceEEcCCCCEEEEEeC-----------CCeEEE
Confidence 5665555552 122 136999999999888876532 111111112223433333331 146999
Q ss_pred EECCCCcEEEcccCCCCCCcceeEEEE--ECCEEEEEecccCC----C---------CceeeeCcEEEEEcCCCceEEec
Q 006384 161 LDLKTNQWEQLNLKGCPSPRSGHRMVL--YKHKIIVFGGFYDT----L---------REVRYYNDLYVFDLDQFKWQEIK 225 (647)
Q Consensus 161 yD~~t~~W~~~~~~~~P~~R~~h~~~~--~~~~lyv~GG~~~~----~---------~~~~~~~dv~~yD~~t~~W~~v~ 225 (647)
+|+.+..-..+.. .|.......... -++++++.--.... . ........++++|+.+.+-..+.
T Consensus 107 ~d~~~g~~~~~~~--~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 184 (388)
T 3pe7_A 107 VDLATLEENVVYQ--VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL 184 (388)
T ss_dssp EETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred EECCCCcceeeee--chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence 9999987666544 333322222222 23333331100000 0 00112367999999988776665
Q ss_pred cCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE
Q 006384 226 PRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (647)
Q Consensus 226 ~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~ 304 (647)
.. + ....+....- ++..+++...... ......+|.+|+.......+... +........+.
T Consensus 185 ~~-----~-~~~~~~~~sp~dg~~l~~~~~~~~----------~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~ 245 (388)
T 3pe7_A 185 QE-----N-QWLGHPIYRPYDDSTVAFCHEGPH----------DLVDARMWLINEDGTNMRKVKTH---AEGESCTHEFW 245 (388)
T ss_dssp EE-----S-SCEEEEEEETTEEEEEEEEECSCT----------TTSSCSEEEEETTSCCCEESCCC---CTTEEEEEEEE
T ss_pred cC-----C-ccccccEECCCCCCEEEEEEecCC----------CCCcceEEEEeCCCCceEEeeeC---CCCcccccceE
Confidence 43 1 1122222222 3444444332211 11234699999877666555331 11111112222
Q ss_pred E-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 305 H-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 305 ~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
. +++.++|..... ......|+++|+.+..-..+..
T Consensus 246 spdg~~l~~~~~~~---------~~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 246 VPDGSALVYVSYLK---------GSPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp CTTSSCEEEEEEET---------TCCCEEEEEECTTTCCEEEEEE
T ss_pred CCCCCEEEEEecCC---------CCCcceEEEEecCCCceEEEEc
Confidence 2 555444433321 0111249999999988766644
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=91.17 E-value=3.6 Score=40.61 Aligned_cols=112 Identities=9% Similarity=0.150 Sum_probs=55.7
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-C---CEEEEEeCCcCCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K---NYLYIFGGEFTSPN 148 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~---~~iyv~GG~~~~~~ 148 (647)
++++.| ++++++.|+. + ..+.+||+.....+.+.... .....-..+.+ . +.+++.|+..
T Consensus 14 ~~~~s~--~g~~las~s~--D-------~~v~iw~~~~~~~~~~~~l~--gH~~~V~~v~~s~~~~g~~l~s~s~D---- 76 (297)
T 2pm7_B 14 DAVMDY--YGKRMATCSS--D-------KTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYD---- 76 (297)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEEBCSSCBCCCEEEC--CCSSCEEEEEECCGGGCSEEEEEETT----
T ss_pred EEEECC--CCCEEEEEeC--C-------CEEEEEecCCCCcEEEEEEc--cccCCeEEEEecCCCcCCEEEEEcCC----
Confidence 344444 5777778873 2 35777887654322111110 00111122333 1 5677777643
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-C---CEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-K---HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~---~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
..|.+||+.+..|..+.... .....-.++.+ . +.+++.|+.+ ..+.+||+.+.
T Consensus 77 -------~~v~iWd~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~g~~l~s~s~d---------~~v~~wd~~~~ 133 (297)
T 2pm7_B 77 -------GKVMIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPMLLVASSD---------GKVSVVEFKEN 133 (297)
T ss_dssp -------TEEEEEEBSSSCBCCCEEEC--CCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEEBCSS
T ss_pred -------CEEEEEEcCCCceEEEEEee--cCCCceeEEEeCcCCCCcEEEEEECC---------CcEEEEEecCC
Confidence 35778888887765443311 11111223333 2 4566667653 35677777654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.12 E-value=7.2 Score=38.72 Aligned_cols=197 Identities=13% Similarity=0.122 Sum_probs=96.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-C----CEEEEEeCCcCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K----NYLYIFGGEFTS 146 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~----~~iyv~GG~~~~ 146 (647)
.++.+.|. +..+++.|+.. .+ -+.+..||+.+.+...+.... ... ...++.+ . +.+++.|+..
T Consensus 22 ~~~~~~p~-~~~l~~~~s~~-~~-----d~~v~iw~~~~~~~~~~~~~~--~~~-~v~~~~~~~~~~~~~~l~~~~~d-- 89 (357)
T 3i2n_A 22 FDCKWVPC-SAKFVTMGNFA-RG-----TGVIQLYEIQHGDLKLLREIE--KAK-PIKCGTFGATSLQQRYLATGDFG-- 89 (357)
T ss_dssp EEEEECTT-SSEEEEEEC---CC-----CEEEEEEEECSSSEEEEEEEE--ESS-CEEEEECTTCCTTTCCEEEEETT--
T ss_pred EEEEEcCC-CceEEEecCcc-CC-----CcEEEEEeCCCCcccceeeec--ccC-cEEEEEEcCCCCCCceEEEecCC--
Confidence 34555552 34677777620 00 136888898887765432210 111 1122233 2 3677777643
Q ss_pred CCCccccccCcEEEEECCCCc--EEEcccCCCCCCcceeEEEE-------ECCEEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 147 PNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVL-------YKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~-------~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
..+.+||+.+.. -..+.. .... -.++.. -++.+++.|+.. ..+.+||+.
T Consensus 90 ---------g~i~iwd~~~~~~~~~~~~~---~~~~-v~~~~~~~~~~~s~~~~~l~~~~~d---------~~i~vwd~~ 147 (357)
T 3i2n_A 90 ---------GNLHIWNLEAPEMPVYSVKG---HKEI-INAIDGIGGLGIGEGAPEIVTGSRD---------GTVKVWDPR 147 (357)
T ss_dssp ---------SCEEEECTTSCSSCSEEECC---CSSC-EEEEEEESGGGCC-CCCEEEEEETT---------SCEEEECTT
T ss_pred ---------CeEEEEeCCCCCccEEEEEe---cccc-eEEEeeccccccCCCccEEEEEeCC---------CeEEEEeCC
Confidence 357888887664 222211 1111 111111 245566677643 368889988
Q ss_pred CCc--eEEeccCCCCCCCCCceeeeEEE-----eCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC
Q 006384 218 QFK--WQEIKPRFGSMWPSPRSGFQFFV-----YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (647)
Q Consensus 218 t~~--W~~v~~~~~~~~P~~R~~~s~~~-----~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~ 290 (647)
+.. ...+..... ...+.-.+++. -++.+++.|+.++. +.+||+.+..-......
T Consensus 148 ~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~~ 208 (357)
T 3i2n_A 148 QKDDPVANMEPVQG---ENKRDCWTVAFGNAYNQEERVVCAGYDNGD----------------IKLFDLRNMALRWETNI 208 (357)
T ss_dssp SCSSCSEEECCCTT---SCCCCEEEEEEECCCC-CCCEEEEEETTSE----------------EEEEETTTTEEEEEEEC
T ss_pred CCCCcceeccccCC---CCCCceEEEEEEeccCCCCCEEEEEccCCe----------------EEEEECccCceeeecCC
Confidence 764 344433211 11122222221 26677777766544 78889887764333221
Q ss_pred CCCCCCceeeEEEEE----CCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 291 GMPPGPRAGFSMCVH----KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 291 g~~P~~R~~~s~~~~----~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
...-.++++. ++..+++|+.. ..|.+||+.+
T Consensus 209 -----~~~v~~~~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~ 243 (357)
T 3i2n_A 209 -----KNGVCSLEFDRKDISMNKLVATSLE--------------GKFHVFDMRT 243 (357)
T ss_dssp -----SSCEEEEEESCSSSSCCEEEEEEST--------------TEEEEEEEEE
T ss_pred -----CCceEEEEcCCCCCCCCEEEEECCC--------------CeEEEEeCcC
Confidence 1122333333 45666666542 3477777654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=91.10 E-value=2 Score=45.25 Aligned_cols=93 Identities=11% Similarity=0.104 Sum_probs=46.1
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
.+.+||+.++....+..... ......++... ++.+++.|+.. ..|.+||+....-..+.. . .
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~d-----------g~i~~wd~~~~~~~~~~~---h--~ 250 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDT-INIWFCSLDVSASSRMVVTGDNV-----------GNVILLNMDGKELWNLRM---H--K 250 (435)
T ss_dssp CEEEEETTSCEEEEEECCSS-CSCCCCCEEEETTTTEEEEECSS-----------SBEEEEESSSCBCCCSBC---C--S
T ss_pred EEEEeeccCCceeEEeccCC-CCccEEEEEECCCCCEEEEEeCC-----------CcEeeeccCcceeEEEec---c--c
Confidence 46677887776665543321 11112223333 56677777743 457888886543211111 1 1
Q ss_pred ceeEEEEE---CCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 181 SGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 181 ~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
..-.++.+ +..+++.|+.+ ..|.+||+.+..
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d---------~~v~iwd~~~~~ 284 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVD---------QTVKIWDLRQVR 284 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETT---------SBCCEEETTTCC
T ss_pred ceEEeeeecCCCceEEEEecCc---------ceeeEEeccccc
Confidence 11122333 33466677653 346677876543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=91.04 E-value=6.3 Score=42.75 Aligned_cols=150 Identities=7% Similarity=-0.030 Sum_probs=75.7
Q ss_pred EEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC-c-ceeEEEEE-C-CEEEEEecccCCCCceeeeCcEE
Q 006384 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-R-SGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 137 iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~-R-~~h~~~~~-~-~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
+++.|+.. ..+.+||+.+.+-...-. .... . .-.+++.. + +.+++.|+.. ..+.
T Consensus 175 ~l~~~~~d-----------~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~ 232 (615)
T 1pgu_A 175 RSMTVGDD-----------GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSD---------RKIS 232 (615)
T ss_dssp EEEEEETT-----------TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETT---------CCEE
T ss_pred EEEEEeCC-----------CcEEEEeCCCcceeeeec--ccCCCCceEEEEEECCCCCCEEEEEeCC---------CeEE
Confidence 67776642 457888887655332211 1111 0 12222322 4 6677777753 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCC
Q 006384 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM 292 (647)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~ 292 (647)
+||+.+.+....-.........+. .+++..++.+++.|+.++. +.+||+.+......-....
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~l~~~~~d~~----------------i~~wd~~~~~~~~~~~~~~ 294 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGI--FALSWLDSQKFATVGADAT----------------IRVWDVTTSKCVQKWTLDK 294 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCE--EEEEESSSSEEEEEETTSE----------------EEEEETTTTEEEEEEECCT
T ss_pred EEECCCCCEeEEecccccccCCce--EEEEEcCCCEEEEEcCCCc----------------EEEEECCCCcEEEEEcCCC
Confidence 999887765443211000001111 1222226777777776544 7788988765544332211
Q ss_pred CCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCC
Q 006384 293 PPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (647)
Q Consensus 293 ~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t 340 (647)
.+......+++..++..++.|+.. ..|.+||+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~--------------g~i~~~d~~~ 328 (615)
T 1pgu_A 295 QQLGNQQVGVVATGNGRIISLSLD--------------GTLNFYELGH 328 (615)
T ss_dssp TCGGGCEEEEEEEETTEEEEEETT--------------SCEEEEETTE
T ss_pred CcccCceeEEEeCCCCeEEEEECC--------------CCEEEEECCC
Confidence 111122223333366666666642 4578888765
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=91.03 E-value=4.2 Score=38.31 Aligned_cols=145 Identities=17% Similarity=0.357 Sum_probs=78.5
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCC--CeEE--EecC--CCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWK--VISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~--~~W~--~l~s--~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~ 152 (647)
++++|+|=|. .+|+|+... .... .+.. +.+|. .--++... ++++|+|-|
T Consensus 16 ~g~~yfFkg~-----------~~Wr~~~~~~~~~~~p~~Is~~w~glP~--~IDAa~~~~~~~~~yfFkG---------- 72 (195)
T 1itv_A 16 GNQLYLFKDG-----------KYWRFSEGRGSRPQGPFLIADKWPALPR--KLDSVFEEPLSKKLFFFSG---------- 72 (195)
T ss_dssp TTEEEEEETT-----------EEEEECCSSSCCCEEEEEHHHHCTTSCS--SCSEEEECTTTCCEEEEET----------
T ss_pred CCEEEEEECC-----------EEEEEECCccccCCCcEEhhhccCCCCC--CccEEEEECCCCeEEEEeC----------
Confidence 6899999883 678887654 2222 2211 22332 22233333 578999988
Q ss_pred cccCcEEEEECCCCcE-EEcccCCCCCC--cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceE-----Ee
Q 006384 153 HHYKDFWMLDLKTNQW-EQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-----EI 224 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~W-~~~~~~~~P~~--R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~-----~v 224 (647)
+.+|+|+..+..- ..+...|+|.. ....+....++++|+|-| +..|+||..+.+-. .+
T Consensus 73 ---~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-----------~~ywr~d~~~~~~~~gyPr~i 138 (195)
T 1itv_A 73 ---RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-----------RRLWRFDVKAQMVDPRSASEV 138 (195)
T ss_dssp ---TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-----------TEEEEEETTTTEECGGGCEEH
T ss_pred ---CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-----------CEEEEEeCCcccccCCCccCh
Confidence 4678888543211 12322244542 233233323689999977 35789998764311 11
Q ss_pred ccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe
Q 006384 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 225 ~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
.....+ +| ..-.++...++.+|+|-|. ..|+|+..+.+
T Consensus 139 ~~~w~G-vp--~~idaa~~~~g~~Yffkg~------------------~y~~~~~~~~~ 176 (195)
T 1itv_A 139 DRMFPG-VP--LDTHDVFQFREKAYFCQDR------------------FYWRVSSRSEL 176 (195)
T ss_dssp HHHSTT-SC--SSCSEEEEETTEEEEEETT------------------EEEEEECCTTC
T ss_pred hhcCCC-CC--CCCCEEEEeCCeEEEEeCC------------------EEEEEECCccE
Confidence 111111 12 1223444457999999874 26788876554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=90.97 E-value=12 Score=36.15 Aligned_cols=198 Identities=9% Similarity=-0.053 Sum_probs=108.4
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
+.+++.+. ++.||+.-.. .+.+++|++....-..+..... ..-+.++.. ++.||+.-..
T Consensus 39 ~gi~~d~~-~~~ly~~d~~---------~~~I~~~~~~g~~~~~~~~~~~---~~p~~ia~d~~~~~lyv~d~~------ 99 (267)
T 1npe_A 39 IGLAFDCV-DKVVYWTDIS---------EPSIGRASLHGGEPTTIIRQDL---GSPEGIALDHLGRTIFWTDSQ------ 99 (267)
T ss_dssp EEEEEETT-TTEEEEEETT---------TTEEEEEESSSCCCEEEECTTC---CCEEEEEEETTTTEEEEEETT------
T ss_pred EEEEEecC-CCEEEEEECC---------CCEEEEEecCCCCcEEEEECCC---CCccEEEEEecCCeEEEEECC------
Confidence 55666543 4788887641 2478999998764443322111 123444544 5789998642
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
.+.+++|++....-..+...+.. .-..+++. +++||+..... ..+.++++++....-..+...
T Consensus 100 -----~~~I~~~~~~g~~~~~~~~~~~~---~P~~i~vd~~~g~lyv~~~~~-------~~~~I~~~~~dg~~~~~~~~~ 164 (267)
T 1npe_A 100 -----LDRIEVAKMDGTQRRVLFDTGLV---NPRGIVTDPVRGNLYWTDWNR-------DNPKIETSHMDGTNRRILAQD 164 (267)
T ss_dssp -----TTEEEEEETTSCSCEEEECSSCS---SEEEEEEETTTTEEEEEECCS-------SSCEEEEEETTSCCCEEEECT
T ss_pred -----CCEEEEEEcCCCCEEEEEECCCC---CccEEEEeeCCCEEEEEECCC-------CCcEEEEEecCCCCcEEEEEC
Confidence 25688999876543333321111 12234443 68899875321 024688888765433333221
Q ss_pred CCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE
Q 006384 228 FGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 228 ~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
.. ..-.++++. ++.||+.-... +.+++|++....-..+...+ . .-+++++-
T Consensus 165 -----~~-~~P~gia~d~~~~~lyv~d~~~----------------~~I~~~~~~g~~~~~~~~~~--~---~P~gi~~d 217 (267)
T 1npe_A 165 -----NL-GLPNGLTFDAFSSQLCWVDAGT----------------HRAECLNPAQPGRRKVLEGL--Q---YPFAVTSY 217 (267)
T ss_dssp -----TC-SCEEEEEEETTTTEEEEEETTT----------------TEEEEEETTEEEEEEEEECC--C---SEEEEEEE
T ss_pred -----CC-CCCcEEEEcCCCCEEEEEECCC----------------CEEEEEecCCCceEEEecCC--C---CceEEEEe
Confidence 11 112234443 57888876433 34888998754333332211 1 12455666
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECCCCcEE
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
++.||+.-.. .+.|++||+.+.+-.
T Consensus 218 ~~~lyva~~~--------------~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 218 GKNLYYTDWK--------------TNSVIAMDLAISKEM 242 (267)
T ss_dssp TTEEEEEETT--------------TTEEEEEETTTTEEE
T ss_pred CCEEEEEECC--------------CCeEEEEeCCCCCce
Confidence 8888885421 356999999876543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.87 E-value=16 Score=37.76 Aligned_cols=67 Identities=9% Similarity=0.096 Sum_probs=38.7
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++.+++.|+.. ..+.+||+.+.+-...-. .+.....-.++.+ ++.+++.|+.+ ..+
T Consensus 181 ~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d---------g~i 238 (437)
T 3gre_A 181 EKSLLVALTNL-----------SRVIIFDIRTLERLQIIE--NSPRHGAVSSICIDEECCVLILGTTR---------GII 238 (437)
T ss_dssp SCEEEEEEETT-----------SEEEEEETTTCCEEEEEE--CCGGGCCEEEEEECTTSCEEEEEETT---------SCE
T ss_pred CCCEEEEEeCC-----------CeEEEEeCCCCeeeEEEc--cCCCCCceEEEEECCCCCEEEEEcCC---------CeE
Confidence 36677777642 468899998876433221 1111112223333 56777777753 458
Q ss_pred EEEEcCCCceE
Q 006384 212 YVFDLDQFKWQ 222 (647)
Q Consensus 212 ~~yD~~t~~W~ 222 (647)
.+||+.+.+..
T Consensus 239 ~iwd~~~~~~~ 249 (437)
T 3gre_A 239 DIWDIRFNVLI 249 (437)
T ss_dssp EEEETTTTEEE
T ss_pred EEEEcCCccEE
Confidence 89999876543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=90.79 E-value=15 Score=36.91 Aligned_cols=121 Identities=10% Similarity=0.005 Sum_probs=65.8
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEE-ECCEEEEEeCCcCCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~-~~~~iyv~GG~~~~~~~ 149 (647)
+.+.+..|. ++.||+++.. .+.+++||+.++..+.+..+ . .-++++. -++.+||...
T Consensus 51 ~egp~~~~~-~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~~~---~--~v~~i~~~~dg~l~v~~~------- 108 (326)
T 2ghs_A 51 GEGPTFDPA-SGTAWWFNIL---------ERELHELHLASGRKTVHALP---F--MGSALAKISDSKQLIASD------- 108 (326)
T ss_dssp EEEEEEETT-TTEEEEEEGG---------GTEEEEEETTTTEEEEEECS---S--CEEEEEEEETTEEEEEET-------
T ss_pred CcCCeEeCC-CCEEEEEECC---------CCEEEEEECCCCcEEEEECC---C--cceEEEEeCCCeEEEEEC-------
Confidence 344555553 3678877652 24789999998877655431 1 1223332 3678877642
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCC--CCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGC--PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~--P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
..+++||+.+.+...+..... +..+.....+--+++||+. ...... ......||+|+ +.+...+
T Consensus 109 ------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~-~~~~~~--~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 109 ------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIG-TMGRKA--ETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp ------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEE-EEETTC--CTTCEEEEEEE--TTEEEEE
T ss_pred ------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEE-eCCCcC--CCCceEEEEEe--CCcEEEe
Confidence 348999999998877654211 1112222222225677763 221100 01135688888 4555544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=90.74 E-value=15 Score=40.55 Aligned_cols=195 Identities=14% Similarity=0.100 Sum_probs=99.0
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE-EecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKD 157 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~d 157 (647)
++.+||.... .+.+.++|+.+.+-. .++.+ ..-|.++.. +.++|+.+. ...
T Consensus 166 ~~~~~V~~~~---------~~~V~viD~~t~~v~~~i~~g-----~~p~~v~~SpDGr~lyv~~~------------dg~ 219 (567)
T 1qks_A 166 ENLFSVTLRD---------AGQIALIDGSTYEIKTVLDTG-----YAVHISRLSASGRYLFVIGR------------DGK 219 (567)
T ss_dssp GGEEEEEETT---------TTEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEET------------TSE
T ss_pred CceEEEEeCC---------CCeEEEEECCCCeEEEEEeCC-----CCccceEECCCCCEEEEEcC------------CCe
Confidence 4677777651 358999999987544 34332 223444433 467887642 146
Q ss_pred EEEEECC--CCcEEEcccCCCCCCcceeEEEEE-----CC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCC
Q 006384 158 FWMLDLK--TNQWEQLNLKGCPSPRSGHRMVLY-----KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG 229 (647)
Q Consensus 158 v~~yD~~--t~~W~~~~~~~~P~~R~~h~~~~~-----~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~ 229 (647)
|.+||+. +.+- +.. .+....-..+++. ++ ++|+..- ..+.+.+||..+.+=...-+...
T Consensus 220 V~viD~~~~t~~~--v~~--i~~G~~P~~ia~s~~~~pDGk~l~v~n~---------~~~~v~ViD~~t~~~~~~i~~~~ 286 (567)
T 1qks_A 220 VNMIDLWMKEPTT--VAE--IKIGSEARSIETSKMEGWEDKYAIAGAY---------WPPQYVIMDGETLEPKKIQSTRG 286 (567)
T ss_dssp EEEEETTSSSCCE--EEE--EECCSEEEEEEECCSTTCTTTEEEEEEE---------ETTEEEEEETTTCCEEEEEECCE
T ss_pred EEEEECCCCCCcE--eEE--EecCCCCceeEEccccCCCCCEEEEEEc---------cCCeEEEEECCCCcEEEEEeccc
Confidence 9999995 4432 221 1222222233333 34 5666532 23678899987765433222100
Q ss_pred ------CCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEE
Q 006384 230 ------SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMC 303 (647)
Q Consensus 230 ------~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~ 303 (647)
...|.+|.....+...+..+++--. ....++++|........+... +..+..|...
T Consensus 287 ~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~---------------~~g~v~~vd~~~~~~~~v~~i---~~~~~~~d~~ 348 (567)
T 1qks_A 287 MTYDEQEYHPEPRVAAILASHYRPEFIVNVK---------------ETGKILLVDYTDLNNLKTTEI---SAERFLHDGG 348 (567)
T ss_dssp ECTTTCCEESCCCEEEEEECSSSSEEEEEET---------------TTTEEEEEETTCSSEEEEEEE---ECCSSEEEEE
T ss_pred cccccccccCCCceEEEEEcCCCCEEEEEec---------------CCCeEEEEecCCCccceeeee---eccccccCce
Confidence 0012344433222223333333211 123578888776554444332 3445555555
Q ss_pred EE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 304 VH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 304 ~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
+- +++.+++.-. ..|.|.++|+.+++=..
T Consensus 349 ~~pdgr~~~va~~-------------~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 349 LDGSHRYFITAAN-------------ARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp ECTTSCEEEEEEG-------------GGTEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEeC-------------CCCeEEEEECCCCcEEE
Confidence 44 3443333221 14779999999886443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.68 E-value=2.5 Score=43.10 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=52.0
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
+.+++.|+. + +.+..||+.+..-...... +.+......... ++.+++.|+.. ..+.
T Consensus 112 ~~~l~s~~~--d-------~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~ 169 (408)
T 4a11_B 112 TGMFTSSSF--D-------KTLKVWDTNTLQTADVFNF--EETVYSHHMSPVSTKHCLVAVGTRG-----------PKVQ 169 (408)
T ss_dssp TTCEEEEET--T-------SEEEEEETTTTEEEEEEEC--SSCEEEEEECSSCSSCCEEEEEESS-----------SSEE
T ss_pred CcEEEEEeC--C-------CeEEEeeCCCCccceeccC--CCceeeeEeecCCCCCcEEEEEcCC-----------CeEE
Confidence 446666662 1 3688899988765544321 122111111111 33466666642 4588
Q ss_pred EEECCCCcEEEcccCCCCCCcceeEEEEE--C-CEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 160 ~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
+||+.+......-. .......++.+ + ..+++.|+.. ..+.+||+.+.
T Consensus 170 ~~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~ll~~~~~d---------g~i~i~d~~~~ 219 (408)
T 4a11_B 170 LCDLKSGSCSHILQ----GHRQEILAVSWSPRYDYILATASAD---------SRVKLWDVRRA 219 (408)
T ss_dssp EEESSSSCCCEEEC----CCCSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTCS
T ss_pred EEeCCCcceeeeec----CCCCcEEEEEECCCCCcEEEEEcCC---------CcEEEEECCCC
Confidence 89987664322111 11111222222 2 3377777753 35788888654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.63 E-value=12 Score=41.89 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=54.8
Q ss_pred EEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCc
Q 006384 191 KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGI 269 (647)
Q Consensus 191 ~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~ 269 (647)
.+++.|+.+ ..|.+||+.+.+-...-.. ....-.+++.. ++.+++.|+.++.
T Consensus 532 ~~l~s~s~d---------~~v~vwd~~~~~~~~~~~~------h~~~v~~v~~spdg~~l~sg~~Dg~------------ 584 (694)
T 3dm0_A 532 PTIVSASWD---------KTVKVWNLSNCKLRSTLAG------HTGYVSTVAVSPDGSLCASGGKDGV------------ 584 (694)
T ss_dssp CEEEEEETT---------SCEEEEETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSB------------
T ss_pred ceEEEEeCC---------CeEEEEECCCCcEEEEEcC------CCCCEEEEEEeCCCCEEEEEeCCCe------------
Confidence 355666643 4588889877654332111 11112223333 6678888887665
Q ss_pred eeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 270 IHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 270 ~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
+.+||+.+.+-.. .. .....-+++++..+..+++++.. +.|.+||+.+..-
T Consensus 585 ----i~iwd~~~~~~~~--~~---~~~~~v~~~~~sp~~~~l~~~~~--------------~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 585 ----VLLWDLAEGKKLY--SL---EANSVIHALCFSPNRYWLCAATE--------------HGIKIWDLESKSI 635 (694)
T ss_dssp ----CEEEETTTTEEEE--CC---BCSSCEEEEEECSSSSEEEEEET--------------TEEEEEETTTTEE
T ss_pred ----EEEEECCCCceEE--Ee---cCCCcEEEEEEcCCCcEEEEEcC--------------CCEEEEECCCCCC
Confidence 6788887764322 11 11122344455544445554432 3489999987643
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=90.49 E-value=14 Score=36.07 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=55.5
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCCCCcceeEEEEE-C---CEEEEEeCCcCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSW-K---NYLYIFGGEFTS 146 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~-~---~~iyv~GG~~~~ 146 (647)
++.+.| ++.+++.|+. + ..+.+||+.+. .++.+.... .....-..+.+ . +.+++.|+..
T Consensus 16 ~~~~~~--~~~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~d~~~l~s~~~d-- 80 (351)
T 3f3f_A 16 DVVYDF--YGRHVATCSS--D-------QHIKVFKLDKDTSNWELSDSWR--AHDSSIVAIDWASPEYGRIIASASYD-- 80 (351)
T ss_dssp EEEECS--SSSEEEEEET--T-------SEEEEEEECSSSCCEEEEEEEE--CCSSCEEEEEECCGGGCSEEEEEETT--
T ss_pred EEEEcC--CCCEEEEeeC--C-------CeEEEEECCCCCCcceecceec--cCCCcEEEEEEcCCCCCCEEEEEcCC--
Confidence 344445 5667777772 2 35677777643 344332111 11112222333 2 6677777753
Q ss_pred CCCccccccCcEEEEECCCC-------cEEEcccCCCCCCcceeEEEEE-C--CEEEEEecccCCCCceeeeCcEEEEEc
Q 006384 147 PNQERFHHYKDFWMLDLKTN-------QWEQLNLKGCPSPRSGHRMVLY-K--HKIIVFGGFYDTLREVRYYNDLYVFDL 216 (647)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~-------~W~~~~~~~~P~~R~~h~~~~~-~--~~lyv~GG~~~~~~~~~~~~dv~~yD~ 216 (647)
..+.+||+.+. .|..+....... ..-.+++.. + +.+++.|+.+ ..+.+||+
T Consensus 81 ---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d---------g~v~iwd~ 141 (351)
T 3f3f_A 81 ---------KTVKLWEEDPDQEECSGRRWNKLCTLNDSK-GSLYSVKFAPAHLGLKLACLGND---------GILRLYDA 141 (351)
T ss_dssp ---------SCEEEEEECTTSCTTSSCSEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETT---------CEEEEEEC
T ss_pred ---------CeEEEEecCCCcccccccCcceeeeecccC-CceeEEEEcCCCCCcEEEEecCC---------CcEEEecC
Confidence 34677777654 344443311111 111222222 2 5667777642 45788887
Q ss_pred CCCc
Q 006384 217 DQFK 220 (647)
Q Consensus 217 ~t~~ 220 (647)
.+.+
T Consensus 142 ~~~~ 145 (351)
T 3f3f_A 142 LEPS 145 (351)
T ss_dssp SSTT
T ss_pred CChH
Confidence 6543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.48 E-value=5.6 Score=40.69 Aligned_cols=206 Identities=12% Similarity=0.038 Sum_probs=96.1
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCC----C-eEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK----Q-EWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEF 144 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~----~-~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~ 144 (647)
.++...| ++.+++.|+. + ..+.+||+.+ . .-..+... ...-.+++.. ++.+++.|+..
T Consensus 71 ~~~~~s~--~~~~l~~~~~--d-------g~v~vw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~~~d 135 (416)
T 2pm9_A 71 NDLDWSH--NNKIIAGALD--N-------GSLELYSTNEANNAINSMARFSNH----SSSVKTVKFNAKQDNVLASGGNN 135 (416)
T ss_dssp EEEEECS--SSSCEEEEES--S-------SCEEEECCSSTTSCCCEEEECCCS----SSCCCEEEECSSSTTBEEEECSS
T ss_pred EEEEECC--CCCeEEEEcc--C-------CeEEEeecccccccccchhhccCC----ccceEEEEEcCCCCCEEEEEcCC
Confidence 3445555 5667777762 2 3678888876 1 22232211 1111222222 25677777643
Q ss_pred CCCCCccccccCcEEEEECCCCc------EE-EcccCCCCCCcceeEEEEE-C-CEEEEEecccCCCCceeeeCcEEEEE
Q 006384 145 TSPNQERFHHYKDFWMLDLKTNQ------WE-QLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRYYNDLYVFD 215 (647)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~------W~-~~~~~~~P~~R~~h~~~~~-~-~~lyv~GG~~~~~~~~~~~~dv~~yD 215 (647)
..+.+||+.+.. -. .+... ......-.+++.. + +.+++.|+.. ..+.+||
T Consensus 136 -----------g~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~v~iwd 194 (416)
T 2pm9_A 136 -----------GEIFIWDMNKCTESPSNYTPLTPGQS-MSSVDEVISLAWNQSLAHVFASAGSS---------NFASIWD 194 (416)
T ss_dssp -----------SCEEBCBTTTTSSCTTTCCCBCCCCS-CCSSCCCCEEEECSSCTTEEEEESSS---------SCEEEEE
T ss_pred -----------CeEEEEECCCCccccccccccccccc-cCCCCCeeEEEeCCCCCcEEEEEcCC---------CCEEEEE
Confidence 357788887764 11 11000 0111111223332 2 5677777753 4688999
Q ss_pred cCCCceEEeccCCCCCCCCCceeeeEEEe-C-CEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCC
Q 006384 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVY-Q-DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (647)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~-~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~ 293 (647)
+.+.+....-............-.+++.. + ..+++.|+.++. ...+.+||+.+..- .+.... .
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-------------~~~i~~~d~~~~~~-~~~~~~-~ 259 (416)
T 2pm9_A 195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN-------------DPSILIWDLRNANT-PLQTLN-Q 259 (416)
T ss_dssp TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS-------------SCCCCEEETTSTTS-CSBCCC-S
T ss_pred CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC-------------CceEEEEeCCCCCC-CcEEee-c
Confidence 98876543332210000001122233333 2 357777776541 01266777765320 011000 0
Q ss_pred CCCceeeEEEEE--CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 294 PGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 294 P~~R~~~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
.....-.++++. ++.+++.|+.. ..|.+||+.+.+
T Consensus 260 ~~~~~v~~~~~s~~~~~~l~s~~~d--------------g~v~~wd~~~~~ 296 (416)
T 2pm9_A 260 GHQKGILSLDWCHQDEHLLLSSGRD--------------NTVLLWNPESAE 296 (416)
T ss_dssp CCSSCEEEEEECSSCSSCEEEEESS--------------SEEEEECSSSCC
T ss_pred CccCceeEEEeCCCCCCeEEEEeCC--------------CCEEEeeCCCCc
Confidence 011112233332 56777777643 348888887764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=90.34 E-value=14 Score=35.98 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=19.8
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECCCC-cEEEeEe
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-RWYPLEL 348 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~-~W~~l~~ 348 (647)
++.+++.||.+ ..|.+|++.+. .|..+..
T Consensus 317 ~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 317 TGTILSSAGDD--------------GKVRLWKATYSNEFKCMSV 346 (351)
T ss_dssp SSCCEEEEETT--------------SCEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEecCC--------------CcEEEEecCcCcchhheee
Confidence 46666776643 35889998764 6877765
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=90.29 E-value=6.9 Score=44.06 Aligned_cols=150 Identities=11% Similarity=0.033 Sum_probs=79.5
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc---eEEeccCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPRFGSMW 232 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~---W~~v~~~~~~~~ 232 (647)
+.+|.++..+..|..+... .... ...+..++.||+...... ....|+.+|+.+.. |+.+.+..
T Consensus 252 ~~l~~~~~~~~~~~~l~~~---~~~~-~~~~~~~g~l~~~s~~~~------~~~~l~~~d~~~~~~~~~~~l~~~~---- 317 (695)
T 2bkl_A 252 NDVYWKRPGEKDFRLLVKG---VGAK-YEVHAWKDRFYVLTDEGA------PRQRVFEVDPAKPARASWKEIVPED---- 317 (695)
T ss_dssp EEEEEECTTCSSCEEEEEC---SSCC-EEEEEETTEEEEEECTTC------TTCEEEEEBTTBCSGGGCEEEECCC----
T ss_pred eEEEEEcCCCCceEEeecC---CCce-EEEEecCCcEEEEECCCC------CCCEEEEEeCCCCCccCCeEEecCC----
Confidence 5789998877788887652 1111 122224556666543321 13578999987755 88876531
Q ss_pred CCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE-ECCeEEE
Q 006384 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALL 311 (647)
Q Consensus 233 P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~-~~~~iyi 311 (647)
+ ...-..++..++.|++....+. ...+|++++....-..+.. |....-.+++. -++..++
T Consensus 318 ~-~~~l~~~~~~~~~lv~~~~~dg--------------~~~l~~~~~~g~~~~~l~~----~~~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 318 S-SASLLSVSIVGGHLSLEYLKDA--------------TSEVRVATLKGKPVRTVQL----PGVGAASNLMGLEDLDDAY 378 (695)
T ss_dssp S-SCEEEEEEEETTEEEEEEEETT--------------EEEEEEEETTCCEEEECCC----SSSSEECCCBSCTTCSEEE
T ss_pred C-CCeEEEEEEECCEEEEEEEECC--------------EEEEEEEeCCCCeeEEecC----CCCeEEEEeecCCCCCEEE
Confidence 1 1122233444888887765433 2458888876543333321 21111011111 1333333
Q ss_pred ecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
|...+. ..-..||.||+.++....+..
T Consensus 379 ~~~ss~----------~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 379 YVFTSF----------TTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp EEEEET----------TEEEEEEEEETTTCCEEEEEE
T ss_pred EEEcCC----------CCCCEEEEEECCCCcEEEEec
Confidence 333221 113569999999888766654
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=90.26 E-value=11 Score=39.61 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=12.6
Q ss_pred eeeEEEEE-CCeEEEecc
Q 006384 298 AGFSMCVH-KKRALLFGG 314 (647)
Q Consensus 298 ~~~s~~~~-~~~iyifGG 314 (647)
..|++++. ++.+|.+|-
T Consensus 338 ~~hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 338 WRHTLAVTERNNVFAWGR 355 (406)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEeCCCCEEEecC
Confidence 35777776 688999984
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=89.88 E-value=7.5 Score=42.15 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=18.5
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ 111 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~ 111 (647)
-.++.+.| ++.++++|+ + +.+.+||+.+.
T Consensus 21 v~~~~~sp--dg~~l~~~~----~------~~v~v~~~~~~ 49 (615)
T 1pgu_A 21 TTHLSYDP--TTNAIAYPC----G------KSAFVRCLDDG 49 (615)
T ss_dssp CCCCEEET--TTTEEEEEE----T------TEEEEEECCSS
T ss_pred eeEEEECC--CCCEEEEec----C------CeEEEEECCCC
Confidence 34455666 566777766 1 26788898865
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=89.85 E-value=19 Score=36.71 Aligned_cols=184 Identities=7% Similarity=-0.091 Sum_probs=90.7
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
+.+.++|+.+.+........ .. -.+++.. ++.+++.|+. +.+.+++..+..............
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~--~~--V~~v~fspdg~~l~s~s~------------~~~~~~~~~~~~~~~~~~~~~~~~ 220 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETR--GE--VKDLHFSTDGKVVAYITG------------SSLEVISTVTGSCIARKTDFDKNW 220 (365)
T ss_dssp CEEEEEETTTTEEEEEEECS--SC--CCEEEECTTSSEEEEECS------------SCEEEEETTTCCEEEEECCCCTTE
T ss_pred CEEEEeECCCCcEEEEeCCC--Cc--eEEEEEccCCceEEeccc------------eeEEEEEeccCcceeeeecCCCCC
Confidence 36788899888765432211 11 1222222 4566666542 346677877776544332111111
Q ss_pred cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCC
Q 006384 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEV 258 (647)
Q Consensus 180 R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~ 258 (647)
........-++.+++.++..... ...++.++.....+..+...... .....-.+++.. ++.+++.|+.++.
T Consensus 221 ~v~~v~fspdg~~l~~~s~d~~~-----~~~i~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~Spdg~~lasgs~D~~- 292 (365)
T 4h5i_A 221 SLSKINFIADDTVLIAASLKKGK-----GIVLTKISIKSGNTSVLRSKQVT--NRFKGITSMDVDMKGELAVLASNDNS- 292 (365)
T ss_dssp EEEEEEEEETTEEEEEEEESSSC-----CEEEEEEEEETTEEEEEEEEEEE--SSCSCEEEEEECTTSCEEEEEETTSC-
T ss_pred CEEEEEEcCCCCEEEEEecCCcc-----eeEEeecccccceecceeeeeec--CCCCCeEeEEECCCCCceEEEcCCCE-
Confidence 12222223377888877764321 12466677666555433221000 001111222233 7788888887765
Q ss_pred CCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEE
Q 006384 259 STDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (647)
Q Consensus 259 ~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd 337 (647)
|.+||..+.+-...-..+. . ..-.++++. ++++++.|+.+ +.|-+|+
T Consensus 293 ---------------V~iwd~~~~~~~~~~~~gH--~-~~V~~v~fSpdg~~laS~S~D--------------~tvrvw~ 340 (365)
T 4h5i_A 293 ---------------IALVKLKDLSMSKIFKQAH--S-FAITEVTISPDSTYVASVSAA--------------NTIHIIK 340 (365)
T ss_dssp ---------------EEEEETTTTEEEEEETTSS--S-SCEEEEEECTTSCEEEEEETT--------------SEEEEEE
T ss_pred ---------------EEEEECCCCcEEEEecCcc--c-CCEEEEEECCCCCEEEEEeCC--------------CeEEEEE
Confidence 8889988765332211111 0 111223333 67777777643 4588888
Q ss_pred CCC
Q 006384 338 LDN 340 (647)
Q Consensus 338 ~~t 340 (647)
+..
T Consensus 341 ip~ 343 (365)
T 4h5i_A 341 LPL 343 (365)
T ss_dssp CCT
T ss_pred cCC
Confidence 754
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.85 E-value=4.4 Score=40.33 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=52.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe--EEEecCCCCCCCcceeEEEE-----ECCEEEEEeCCcCCCCCcccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVS-----WKNYLYIFGGEFTSPNQERFH 153 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~--W~~l~s~~~P~~R~~ha~v~-----~~~~iyv~GG~~~~~~~~~~~ 153 (647)
++.+++.|+. + ..+..||+.+.. ...+........+.-.+++. -++.+++.|+..
T Consensus 128 ~~~~l~~~~~--d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d--------- 189 (357)
T 3i2n_A 128 GAPEIVTGSR--D-------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN--------- 189 (357)
T ss_dssp CCCEEEEEET--T-------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT---------
T ss_pred CccEEEEEeC--C-------CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC---------
Confidence 3455666652 2 367888887654 33333221111222223321 256666776532
Q ss_pred ccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE----CCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 154 HYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 154 ~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
..+.+||+.+..-..... . ...-.+++.. ++.+++.|+.. ..+.+||+.+
T Consensus 190 --~~i~i~d~~~~~~~~~~~--~--~~~v~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~ 243 (357)
T 3i2n_A 190 --GDIKLFDLRNMALRWETN--I--KNGVCSLEFDRKDISMNKLVATSLE---------GKFHVFDMRT 243 (357)
T ss_dssp --SEEEEEETTTTEEEEEEE--C--SSCEEEEEESCSSSSCCEEEEEEST---------TEEEEEEEEE
T ss_pred --CeEEEEECccCceeeecC--C--CCceEEEEcCCCCCCCCEEEEECCC---------CeEEEEeCcC
Confidence 468899998876433322 1 1122233333 45666666642 3567777654
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=89.79 E-value=20 Score=36.97 Aligned_cols=195 Identities=12% Similarity=0.230 Sum_probs=102.3
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCC-CCCC--c-------ceeEEEEE----CC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPP--R-------SAHQAVSW----KN 135 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~-~P~~--R-------~~ha~v~~----~~ 135 (647)
.-+++++.|.+.+.||+.+.. +. +-.-|++.+-...+|+.+..+. .|.. + .-++++.. .+
T Consensus 56 ~v~~i~~dp~~~~~l~~g~~~---g~---~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 129 (394)
T 3b7f_A 56 TIHHIVQDPREPERMLMAART---GH---LGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG 129 (394)
T ss_dssp EEEEEEECSSSTTCEEEEEEC--------CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT
T ss_pred ceEEEEECCCCCCeEEEEecC---CC---CCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC
Confidence 446667766445778876542 11 0114777766778999886431 1111 1 11123332 46
Q ss_pred EEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCC-CCC--------------CcceeEEEEE---CCEEEEEec
Q 006384 136 YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS--------------PRSGHRMVLY---KHKIIVFGG 197 (647)
Q Consensus 136 ~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~-~P~--------------~R~~h~~~~~---~~~lyv~GG 197 (647)
.||+.+. ..-|++.+-...+|+.+.... .|. ....+.+++. .+.||+..+
T Consensus 130 ~l~~g~~------------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~ 197 (394)
T 3b7f_A 130 TWYAGTS------------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS 197 (394)
T ss_dssp CEEEEEE------------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEec------------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC
Confidence 6777542 135778877778999885310 121 1122344433 356777543
Q ss_pred ccCCCCceeeeCcEEEEEcCCCceEEeccCC-CCCCCCC-----ceeeeEEEeC---CEEEEEecccCCCCCcccCCCCC
Q 006384 198 FYDTLREVRYYNDLYVFDLDQFKWQEIKPRF-GSMWPSP-----RSGFQFFVYQ---DEVFLYGGYSKEVSTDKNQSEKG 268 (647)
Q Consensus 198 ~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~-~~~~P~~-----R~~~s~~~~~---~~Iyv~GG~~~~~~~~~~~~~~~ 268 (647)
. ..|++.+-...+|+.+.... ....|.+ ...+.+++.. +.||+-.+ .
T Consensus 198 ~----------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--~------------ 253 (394)
T 3b7f_A 198 S----------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--C------------ 253 (394)
T ss_dssp T----------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--T------------
T ss_pred C----------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--C------------
Confidence 1 23677766778899885421 1111221 2234444442 56666321 1
Q ss_pred ceeeeEEEEeCCCCeEEEeecCCCCCCC--ceeeEEEEE---CCeEEEe
Q 006384 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGP--RAGFSMCVH---KKRALLF 312 (647)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~v~~~g~~P~~--R~~~s~~~~---~~~iyif 312 (647)
.|++.+-...+|+.+... .|.. ..++++++. .+.||+.
T Consensus 254 ----gl~~s~D~G~tW~~~~~~--l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 254 ----GIYRMDRREGVWKRIGDA--MPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp ----EEEEEETTTTEEECGGGG--SCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred ----eEEEeCCCCCcceECCCC--CCCCCccceEEEEECCCCCCEEEEE
Confidence 277888888999998641 2321 334444443 3567765
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.76 E-value=3.5 Score=42.28 Aligned_cols=150 Identities=12% Similarity=0.031 Sum_probs=74.7
Q ss_pred CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC----cc-eeEEEEE-C-CEEEEEecccCCCCceee
Q 006384 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP----RS-GHRMVLY-K-HKIIVFGGFYDTLREVRY 207 (647)
Q Consensus 135 ~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~----R~-~h~~~~~-~-~~lyv~GG~~~~~~~~~~ 207 (647)
+.+++.|+.. ..+.+||+.+......-. .+.. .. -.+++.. + ..+++.|+..+.
T Consensus 178 ~~~l~~~~~d-----------g~v~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~------ 238 (416)
T 2pm9_A 178 AHVFASAGSS-----------NFASIWDLKAKKEVIHLS--YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN------ 238 (416)
T ss_dssp TTEEEEESSS-----------SCEEEEETTTTEEEEEEC--CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS------
T ss_pred CcEEEEEcCC-----------CCEEEEECCCCCcceEEe--ccccccccCCceEEEEECCCCCCEEEEEECCCC------
Confidence 5677777743 458899998876543322 1211 12 2223333 2 356777664321
Q ss_pred eCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEE
Q 006384 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (647)
Q Consensus 208 ~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (647)
...+.+||+.+..-. +.... ......-.+++.. ++.+++.|+.++. +.+||+.+.+-.
T Consensus 239 ~~~i~~~d~~~~~~~-~~~~~---~~~~~~v~~~~~s~~~~~~l~s~~~dg~----------------v~~wd~~~~~~~ 298 (416)
T 2pm9_A 239 DPSILIWDLRNANTP-LQTLN---QGHQKGILSLDWCHQDEHLLLSSGRDNT----------------VLLWNPESAEQL 298 (416)
T ss_dssp SCCCCEEETTSTTSC-SBCCC---SCCSSCEEEEEECSSCSSCEEEEESSSE----------------EEEECSSSCCEE
T ss_pred CceEEEEeCCCCCCC-cEEee---cCccCceeEEEeCCCCCCeEEEEeCCCC----------------EEEeeCCCCccc
Confidence 126788888764311 11110 0011112223332 5677788876554 778887765433
Q ss_pred EeecCCCCCCCceeeEEEEE-CC-eEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 286 KVKKIGMPPGPRAGFSMCVH-KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 286 ~v~~~g~~P~~R~~~s~~~~-~~-~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
..-.. ....-.++++. ++ .+++.|+.. +.|.+||+.+.
T Consensus 299 ~~~~~----~~~~v~~~~~s~~~~~~l~s~~~d--------------~~i~iw~~~~~ 338 (416)
T 2pm9_A 299 SQFPA----RGNWCFKTKFAPEAPDLFACASFD--------------NKIEVQTLQNL 338 (416)
T ss_dssp EEEEC----SSSCCCCEEECTTCTTEEEECCSS--------------SEEEEEESCCC
T ss_pred eeecC----CCCceEEEEECCCCCCEEEEEecC--------------CcEEEEEccCC
Confidence 22111 01111223333 34 677777753 35888888654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.65 E-value=15 Score=35.40 Aligned_cols=107 Identities=9% Similarity=0.064 Sum_probs=56.5
Q ss_pred ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCC
Q 006384 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (647)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~ 267 (647)
-++. ++.|+.. ..+.+||+.+.+-...-.. ....-.+++...+..++.|+.++.
T Consensus 194 ~~~~-~~~~~~d---------g~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~l~~~~~dg~---------- 247 (313)
T 3odt_A 194 DDGH-FISCSND---------GLIKLVDMHTGDVLRTYEG------HESFVYCIKLLPNGDIVSCGEDRT---------- 247 (313)
T ss_dssp ETTE-EEEEETT---------SEEEEEETTTCCEEEEEEC------CSSCEEEEEECTTSCEEEEETTSE----------
T ss_pred CCCe-EEEccCC---------CeEEEEECCchhhhhhhhc------CCceEEEEEEecCCCEEEEecCCE----------
Confidence 3666 6666642 4688999887653322111 111122333333324667766544
Q ss_pred CceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 268 GIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 268 ~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
+.+||+.+.+....-.. +.. .-.++++. +++ ++.|+.. +.|.+||+.+.++..
T Consensus 248 ------v~iwd~~~~~~~~~~~~---~~~-~i~~~~~~~~~~-~~~~~~d--------------g~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 248 ------VRIWSKENGSLKQVITL---PAI-SIWSVDCMSNGD-IIVGSSD--------------NLVRIFSQEKSRWAS 301 (313)
T ss_dssp ------EEEECTTTCCEEEEEEC---SSS-CEEEEEECTTSC-EEEEETT--------------SCEEEEESCGGGCCC
T ss_pred ------EEEEECCCCceeEEEec---cCc-eEEEEEEccCCC-EEEEeCC--------------CcEEEEeCCCCceee
Confidence 88899877755443321 111 12233333 455 4555532 459999998876654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=89.64 E-value=8.4 Score=37.86 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=36.4
Q ss_pred CEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC--CeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCc
Q 006384 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKG 322 (647)
Q Consensus 246 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~ 322 (647)
+.+++.|+.++. +.++|+.+ ..|........ .....-.+++.. ++.+++.||.+
T Consensus 219 ~~~las~s~D~~----------------v~iWd~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~las~~~D------ 275 (297)
T 2pm7_B 219 RSYMASVSQDRT----------------CIIWTQDNEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGD------ 275 (297)
T ss_dssp SEEEEEEETTSC----------------EEEEEESSTTSCCEEEESSSS-CCSSCEEEEEECSSSCCEEEEETT------
T ss_pred ceEEEEEECCCc----------------EEEEEeCCCCCccceeeeecc-cCCCcEEEEEECCCCCEEEEEcCC------
Confidence 477888887655 55566543 34543321100 111122233333 56677777643
Q ss_pred cccccccCCcEEEEECC-CCcEEEeEe
Q 006384 323 DVIMSLFLNELYGFQLD-NHRWYPLEL 348 (647)
Q Consensus 323 ~~~~~~~~ndl~~yd~~-t~~W~~l~~ 348 (647)
+.|.+|++. .+.|..+..
T Consensus 276 --------~~v~lw~~~~~g~w~~~~~ 294 (297)
T 2pm7_B 276 --------NKVTLWKENLEGKWEPAGE 294 (297)
T ss_dssp --------SCEEEEEECTTSCEEEC--
T ss_pred --------CcEEEEEECCCCcEEeccc
Confidence 346677765 457887654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=89.63 E-value=15 Score=41.31 Aligned_cols=195 Identities=12% Similarity=0.094 Sum_probs=97.1
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCC--CccccccCcEEEEECCCCcE--EEcccC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN--QERFHHYKDFWMLDLKTNQW--EQLNLK 174 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~--~~~~~~~~dv~~yD~~t~~W--~~~~~~ 174 (647)
..++++|+.+++... ....+... +..+.+ +++.++++....... .........||++++.+..- ..+..
T Consensus 147 ~~i~v~dl~tg~~~~--~~~~~~~~--~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~- 221 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSK--VDVIEGGK--YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE- 221 (695)
T ss_dssp CEEEEEETTTCCBCS--SCCBSCCT--TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-
T ss_pred EEEEEEECCCCCCcC--CcccCccc--ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-
Confidence 478999999887531 11111111 122333 455555554322100 00012346799999987753 22222
Q ss_pred CCCCC-cceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEe
Q 006384 175 GCPSP-RSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (647)
Q Consensus 175 ~~P~~-R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~G 252 (647)
.+.. ........ -+++.++++..... ..+.+|+++..+..|..+... ..... ..+..++.||+..
T Consensus 222 -~~~~~~~~~~~~~SpDG~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~l~~~-----~~~~~--~~~~~~g~l~~~s 288 (695)
T 2bkl_A 222 -RTGDPTTFLQSDLSRDGKYLFVYILRGW-----SENDVYWKRPGEKDFRLLVKG-----VGAKY--EVHAWKDRFYVLT 288 (695)
T ss_dssp -CCCCTTCEEEEEECTTSCCEEEEEEETT-----TEEEEEEECTTCSSCEEEEEC-----SSCCE--EEEEETTEEEEEE
T ss_pred -cCCCCEEEEEEEECCCCCEEEEEEeCCC-----CceEEEEEcCCCCceEEeecC-----CCceE--EEEecCCcEEEEE
Confidence 1221 22222222 24554455443221 245788888878888888654 11111 2222455566654
Q ss_pred cccCCCCCcccCCCCCceeeeEEEEeCCCCe---EEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCcccccccc
Q 006384 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE---WSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLF 329 (647)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~---W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~ 329 (647)
.... ....++++|+.+.. |+.+.... + ...-..+++.+++|++......
T Consensus 289 ~~~~-------------~~~~l~~~d~~~~~~~~~~~l~~~~--~-~~~l~~~~~~~~~lv~~~~~dg------------ 340 (695)
T 2bkl_A 289 DEGA-------------PRQRVFEVDPAKPARASWKEIVPED--S-SASLLSVSIVGGHLSLEYLKDA------------ 340 (695)
T ss_dssp CTTC-------------TTCEEEEEBTTBCSGGGCEEEECCC--S-SCEEEEEEEETTEEEEEEEETT------------
T ss_pred CCCC-------------CCCEEEEEeCCCCCccCCeEEecCC--C-CCeEEEEEEECCEEEEEEEECC------------
Confidence 3221 12358899986654 88775421 1 1222334445888777765432
Q ss_pred CCcEEEEECCCC
Q 006384 330 LNELYGFQLDNH 341 (647)
Q Consensus 330 ~ndl~~yd~~t~ 341 (647)
...|+++++...
T Consensus 341 ~~~l~~~~~~g~ 352 (695)
T 2bkl_A 341 TSEVRVATLKGK 352 (695)
T ss_dssp EEEEEEEETTCC
T ss_pred EEEEEEEeCCCC
Confidence 345778877544
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=89.53 E-value=11 Score=42.61 Aligned_cols=123 Identities=16% Similarity=0.138 Sum_probs=70.6
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCc--EEEcccCCC---CCC---cceeEEEEECCEEEEEecccCC
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGC---PSP---RSGHRMVLYKHKIIVFGGFYDT 201 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~~---P~~---R~~h~~~~~~~~lyv~GG~~~~ 201 (647)
-++.++.||+... .+.|+.||..+++ |+.-..... +.. ....+.++.+++||+...
T Consensus 73 P~v~~g~vyv~~~------------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---- 136 (677)
T 1kb0_A 73 PVVVDGIMYVSAS------------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---- 136 (677)
T ss_dssp CEEETTEEEEECG------------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----
T ss_pred CEEECCEEEEECC------------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC----
Confidence 3567999999864 1468999998874 876543110 000 112245567888888532
Q ss_pred CCceeeeCcEEEEEcCCCc--eEEecc-CCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEe
Q 006384 202 LREVRYYNDLYVFDLDQFK--WQEIKP-RFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (647)
Q Consensus 202 ~~~~~~~~dv~~yD~~t~~--W~~v~~-~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (647)
-..|+.+|..+.+ |+.-.. .. ........+.++.++.||+..+.... .....++.||
T Consensus 137 ------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~~p~v~~~~v~v~~~~~~~-----------~~~g~v~a~D 196 (677)
T 1kb0_A 137 ------DGRLIALDAATGKEVWHQNTFEGQ---KGSLTITGAPRVFKGKVIIGNGGAEY-----------GVRGYITAYD 196 (677)
T ss_dssp ------TSEEEEEETTTCCEEEEEETTTTC---CSSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEE
T ss_pred ------CCEEEEEECCCCCEEeeecCCcCc---CcCcccccCcEEECCEEEEEeccccc-----------CCCCEEEEEE
Confidence 2469999998765 876533 10 01111222334568888765432110 1234589999
Q ss_pred CCCC--eEEEee
Q 006384 279 PRTW--EWSKVK 288 (647)
Q Consensus 279 ~~t~--~W~~v~ 288 (647)
+.+. .|+.-.
T Consensus 197 ~~tG~~~W~~~~ 208 (677)
T 1kb0_A 197 AETGERKWRWFS 208 (677)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEecc
Confidence 8654 587754
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.38 E-value=16 Score=35.25 Aligned_cols=186 Identities=8% Similarity=0.029 Sum_probs=85.6
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
++.+++.|+. + +.+.+||+.+..-...... ....-.+++.. ++.+++.|+.. ..+.
T Consensus 28 ~~~~l~s~~~--d-------g~v~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~ 84 (313)
T 3odt_A 28 DDSKVASVSR--D-------GTVRLWSKDDQWLGTVVYT---GQGFLNSVCYDSEKELLLFGGKD-----------TMIN 84 (313)
T ss_dssp ETTEEEEEET--T-------SEEEEEEESSSEEEEEEEE---CSSCEEEEEEETTTTEEEEEETT-----------SCEE
T ss_pred CCCEEEEEEc--C-------CcEEEEECCCCEEEEEeec---CCccEEEEEECCCCCEEEEecCC-----------CeEE
Confidence 4556666762 2 3688888877654433221 11112223333 45666777643 3466
Q ss_pred EEECCCCc-EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCcee
Q 006384 160 MLDLKTNQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (647)
Q Consensus 160 ~yD~~t~~-W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~ 238 (647)
.|++.... ...+.. .......-.++.+++.+++.|+.. ..+.+||.......... . ..+...
T Consensus 85 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~-~-----~~~v~~ 147 (313)
T 3odt_A 85 GVPLFATSGEDPLYT--LIGHQGNVCSLSFQDGVVISGSWD---------KTAKVWKEGSLVYNLQA-H-----NASVWD 147 (313)
T ss_dssp EEETTCCTTSCC-CE--ECCCSSCEEEEEEETTEEEEEETT---------SEEEEEETTEEEEEEEC-C-----SSCEEE
T ss_pred EEEeeecCCCCcccc--hhhcccCEEEEEecCCEEEEEeCC---------CCEEEEcCCcEEEeccc-C-----CCceeE
Confidence 66665431 111111 111122223334456666667653 35777773222222111 1 112222
Q ss_pred eeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceec
Q 006384 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (647)
Q Consensus 239 ~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~ 317 (647)
......++.+++.|+.++. +.+||..... ..+.. +....-.+++.. ++. ++.|+..
T Consensus 148 ~~~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~-~~~~~----~~~~~i~~~~~~~~~~-~~~~~~d- 204 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKT----------------IKLWQNDKVI-KTFSG----IHNDVVRHLAVVDDGH-FISCSND- 204 (313)
T ss_dssp EEEEETTTTEEEEEETTSC----------------EEEEETTEEE-EEECS----SCSSCEEEEEEEETTE-EEEEETT-
T ss_pred EEEccCCCCEEEEEECCCC----------------EEEEecCceE-EEEec----cCcccEEEEEEcCCCe-EEEccCC-
Confidence 2222225667777776654 6677733221 11111 112222333333 566 6666532
Q ss_pred cccCccccccccCCcEEEEECCCCc
Q 006384 318 MEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 318 ~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
..|.+||+.+.+
T Consensus 205 -------------g~i~i~d~~~~~ 216 (313)
T 3odt_A 205 -------------GLIKLVDMHTGD 216 (313)
T ss_dssp -------------SEEEEEETTTCC
T ss_pred -------------CeEEEEECCchh
Confidence 458999987654
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=89.19 E-value=15 Score=37.90 Aligned_cols=194 Identities=8% Similarity=0.078 Sum_probs=100.8
Q ss_pred cEEEEECCC--CeEEEecCCCCCCCcceeEEEEE---CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCC-
Q 006384 102 DLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG- 175 (647)
Q Consensus 102 dl~~yd~~~--~~W~~l~s~~~P~~R~~ha~v~~---~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~- 175 (647)
-+++|+... .+|+.+... +....-++++.. .+.||+.+..... -.-|++.+-...+|+.+....
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~--~~~~~v~~i~~dp~~~~~l~~g~~~g~~--------g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPV--FLGHTIHHIVQDPREPERMLMAARTGHL--------GPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEE--STTSEEEEEEECSSSTTCEEEEEEC--C--------CEEEEEESSTTSCCEECSBCCC
T ss_pred ceEEEECCCCCCCceECCcc--CCCCceEEEEECCCCCCeEEEEecCCCC--------CccEEEeCCCCCCceECCcccc
Confidence 367777655 689976421 122334444444 4678876532100 024777766778999986421
Q ss_pred CCCC--c-----cee--EEEEE----CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCC-----------
Q 006384 176 CPSP--R-----SGH--RMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM----------- 231 (647)
Q Consensus 176 ~P~~--R-----~~h--~~~~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~----------- 231 (647)
.+.. + ..+ ++++. .+.||+.+. ..-|++.+-...+|+.+.......
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~----------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~ 171 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS----------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQD 171 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE----------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC--
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEec----------CCcEEEEcCCCCCeEECcCccCCcccccccccccc
Confidence 1211 1 111 23332 467777542 134777776778899885421000
Q ss_pred -CCCCceeeeEEEe---CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCC---CCCCC-----cee
Q 006384 232 -WPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG---MPPGP-----RAG 299 (647)
Q Consensus 232 -~P~~R~~~s~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g---~~P~~-----R~~ 299 (647)
.+.....+++++. .+.|||.... . -+++.+-...+|+.+.... ..|.+ ...
T Consensus 172 g~~~~~~i~~i~~d~~~~~~l~vg~~~-g----------------gl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~ 234 (394)
T 3b7f_A 172 GTPDGPKMHSILVDPRDPKHLYIGMSS-G----------------GVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDP 234 (394)
T ss_dssp --CCCCEEEEEEECTTCTTCEEEEEET-B----------------EEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCE
T ss_pred CCCCCCceeEEEECCCCCCEEEEEECC-C----------------CEEEECCCCCCceECCCCccccccCCCccccCcce
Confidence 0111222344443 3567764322 1 2677777778999885311 11211 223
Q ss_pred eEEEEEC---CeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 300 FSMCVHK---KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 300 ~s~~~~~---~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
+++++.. +.||+ |.. ..||+++-...+|..+..
T Consensus 235 ~~i~~~~~~~~~l~v-g~~---------------~gl~~s~D~G~tW~~~~~ 270 (394)
T 3b7f_A 235 HCVVQHPAAPDILYQ-QNH---------------CGIYRMDRREGVWKRIGD 270 (394)
T ss_dssp EEEEECSSSTTEEEE-EET---------------TEEEEEETTTTEEECGGG
T ss_pred eEEEECCCCCCEEEE-EcC---------------CeEEEeCCCCCcceECCC
Confidence 4444442 45655 321 238888888889988753
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=89.07 E-value=17 Score=40.97 Aligned_cols=104 Identities=10% Similarity=0.073 Sum_probs=62.5
Q ss_pred eCcEEEEECCC------C--eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC---cE
Q 006384 100 YGDLYRYDVEK------Q--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN---QW 168 (647)
Q Consensus 100 ~ndl~~yd~~~------~--~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~---~W 168 (647)
.+.+|.+|+.+ . .++.+.... .. ........++.||+.+..... ...++++|+.+. .|
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~--~~-~~~~~s~dg~~l~~~s~~~~~--------~~~l~~~d~~~~~~~~~ 326 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNF--EG-EYDYVTNEGTVFTFKTNRHSP--------NYRLINIDFTDPEESKW 326 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSS--SS-CEEEEEEETTEEEEEECTTCT--------TCEEEEEETTSCCGGGC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCC--Cc-EEEEEeccCCEEEEEECCCCC--------CCEEEEEeCCCCCcccc
Confidence 46899999876 4 688776532 11 122233347888888754221 257999999876 58
Q ss_pred EEcccCCCCCCc-ceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCc-eEEe
Q 006384 169 EQLNLKGCPSPR-SGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK-WQEI 224 (647)
Q Consensus 169 ~~~~~~~~P~~R-~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~-W~~v 224 (647)
..+.. +... .-..++.. +++|++...... ...|+++|+.+++ ...+
T Consensus 327 ~~l~~---~~~~~~~~~~~~~~~~~lv~~~~~~g-------~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 327 KVLVP---EHEKDVLEWVACVRSNFLVLCYLHDV-------KNTLQLHDLATGALLKIF 375 (710)
T ss_dssp EEEEC---CCSSCEEEEEEEETTTEEEEEEEETT-------EEEEEEEETTTCCEEEEE
T ss_pred eeccC---CCCCCeEEEEEEEcCCEEEEEEEECC-------EEEEEEEECCCCCEEEec
Confidence 87754 2221 22234445 678877665432 4568999986654 3444
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=88.95 E-value=11 Score=37.20 Aligned_cols=215 Identities=9% Similarity=-0.033 Sum_probs=102.7
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
..+.+..+. ++.||+.+-. .+.+++|++. ...+.+... .. ..++++.. ++.||+....
T Consensus 47 ~egp~~~~~-g~~l~~~d~~---------~~~i~~~~~~-g~~~~~~~~---~~-~~~gl~~d~dG~l~v~~~~------ 105 (305)
T 3dr2_A 47 SEGPAWWEA-QRTLVWSDLV---------GRRVLGWRED-GTVDVLLDA---TA-FTNGNAVDAQQRLVHCEHG------ 105 (305)
T ss_dssp EEEEEEEGG-GTEEEEEETT---------TTEEEEEETT-SCEEEEEES---CS-CEEEEEECTTSCEEEEETT------
T ss_pred ccCCeEeCC-CCEEEEEECC---------CCEEEEEeCC-CCEEEEeCC---CC-ccceeeECCCCCEEEEECC------
Confidence 344555552 3557777642 2468899984 445544321 11 12223322 5678876421
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCC--CCCcceeEEEEECCEEEEE----ecccC---CC-CceeeeCcEEEEEcCCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGC--PSPRSGHRMVLYKHKIIVF----GGFYD---TL-REVRYYNDLYVFDLDQF 219 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~--P~~R~~h~~~~~~~~lyv~----GG~~~---~~-~~~~~~~dv~~yD~~t~ 219 (647)
...|++|++. .+...+..... +..+....++--++.||+. |-... .. ....-...|++||+.+.
T Consensus 106 -----~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g 179 (305)
T 3dr2_A 106 -----RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS 179 (305)
T ss_dssp -----TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred -----CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence 1468889886 66665543110 1111122222236788885 32210 00 00001357999999888
Q ss_pred ceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCc
Q 006384 220 KWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (647)
Q Consensus 220 ~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R 297 (647)
+++.+. . . ..+ .+++.. +..||+....... .....+++|++..............+. .
T Consensus 180 ~~~~~~-~--~--~~p---~gl~~spdg~~lyv~~~~~~~-----------~~~~~i~~~~~~~~~l~~~~~~~~~~~-~ 239 (305)
T 3dr2_A 180 PLQRMA-D--L--DHP---NGLAFSPDEQTLYVSQTPEQG-----------HGSVEITAFAWRDGALHDRRHFASVPD-G 239 (305)
T ss_dssp CCEEEE-E--E--SSE---EEEEECTTSSEEEEEECCC--------------CCCEEEEEEEETTEEEEEEEEECCSS-S
T ss_pred cEEEEe-c--C--CCC---cceEEcCCCCEEEEEecCCcC-----------CCCCEEEEEEecCCCccCCeEEEECCC-C
Confidence 887765 2 0 111 233333 3357776532110 012458888876554322111100010 0
Q ss_pred eeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 298 AGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 298 ~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.-.++++- ++.||+..+ +.|++|++....-..+..
T Consensus 240 ~pdgi~~d~~G~lwv~~~----------------~gv~~~~~~g~~~~~~~~ 275 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSSSG----------------TGVCVFDSDGQLLGHIPT 275 (305)
T ss_dssp CCCSEEECTTSCEEECCS----------------SEEEEECTTSCEEEEEEC
T ss_pred CCCeEEECCCCCEEEecC----------------CcEEEECCCCCEEEEEEC
Confidence 11123332 466666542 238999997665555554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=88.92 E-value=19 Score=35.39 Aligned_cols=181 Identities=8% Similarity=-0.043 Sum_probs=89.4
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCC-eEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCC
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQ-EWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSP 147 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~-~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~ 147 (647)
..+.+.+.| ++.||+.+. +.++.||+... .|+.-.. .....+++... ++.+++.....
T Consensus 38 ~~~~~~~~p--dG~ilvs~~-----------~~V~~~d~~G~~~W~~~~~----~~~~~~~~~~~~dG~~lv~~~~~--- 97 (276)
T 3no2_A 38 ECNSVAATK--AGEILFSYS-----------KGAKMITRDGRELWNIAAP----AGCEMQTARILPDGNALVAWCGH--- 97 (276)
T ss_dssp CCCEEEECT--TSCEEEECB-----------SEEEEECTTSCEEEEEECC----TTCEEEEEEECTTSCEEEEEEST---
T ss_pred CCcCeEECC--CCCEEEeCC-----------CCEEEECCCCCEEEEEcCC----CCccccccEECCCCCEEEEecCC---
Confidence 345666776 677777332 35899998433 4664321 11223344433 45555553310
Q ss_pred CCccccccCcEEEEECCCC-cEEEcccCCCCCC--cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC-CceEE
Q 006384 148 NQERFHHYKDFWMLDLKTN-QWEQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQE 223 (647)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~-~W~~~~~~~~P~~--R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~W~~ 223 (647)
...++.||+... .|+.-.....+.+ .........++.+++.... ...|..||+.- ..|+.
T Consensus 98 -------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---------~~~v~~~d~~G~~~w~~ 161 (276)
T 3no2_A 98 -------PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---------TSEVREIAPNGQLLNSV 161 (276)
T ss_dssp -------TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT---------TTEEEEECTTSCEEEEE
T ss_pred -------CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC---------CCEEEEECCCCCEEEEE
Confidence 135778887544 2432211111111 1112233345555554331 24688999872 23654
Q ss_pred eccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCC--CeEEEeecCCCCCCCce--
Q 006384 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRA-- 298 (647)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~v~~~g~~P~~R~-- 298 (647)
-... .| +++... ++.++|.+.... .+..||+.+ ..|+.-... .+..|.
T Consensus 162 ~~~~----~~-----~~~~~~~~g~~~v~~~~~~----------------~v~~~d~~tG~~~w~~~~~~--~~~~~l~~ 214 (276)
T 3no2_A 162 KLSG----TP-----FSSAFLDNGDCLVACGDAH----------------CFVQLNLESNRIVRRVNAND--IEGVQLFF 214 (276)
T ss_dssp ECSS----CC-----CEEEECTTSCEEEECBTTS----------------EEEEECTTTCCEEEEEEGGG--SBSCCCSE
T ss_pred ECCC----Cc-----cceeEcCCCCEEEEeCCCC----------------eEEEEeCcCCcEEEEecCCC--CCCccccc
Confidence 3321 12 223334 677777765432 288999874 467765321 122222
Q ss_pred eeEEEEE-CCeEEEec
Q 006384 299 GFSMCVH-KKRALLFG 313 (647)
Q Consensus 299 ~~s~~~~-~~~iyifG 313 (647)
-.++++. ++.+||..
T Consensus 215 ~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 215 VAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred cccceEcCCCCEEEEe
Confidence 2233333 77888775
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=88.91 E-value=0.68 Score=47.31 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=72.1
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++.++++|+.. ..+.+||+.+..|..+... ......-.++.+ ++.+++.|+.+ ..+
T Consensus 22 ~g~~l~~~~~d-----------~~i~iw~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~d---------~~v 79 (377)
T 3dwl_C 22 QRTEFVTTTAT-----------NQVELYEQDGNGWKHARTF--SDHDKIVTCVDWAPKSNRIVTCSQD---------RNA 79 (377)
T ss_dssp SSSEEECCCSS-----------SCBCEEEEETTEEEECCCB--CCCSSCEEEEEECTTTCCEEEEETT---------SSE
T ss_pred CCCEEEEecCC-----------CEEEEEEccCCceEEEEEE--ecCCceEEEEEEeCCCCEEEEEeCC---------CeE
Confidence 45566666643 3466788888888776652 222222222333 45677777753 358
Q ss_pred EEEEcCCCc-eEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe-EEEee
Q 006384 212 YVFDLDQFK-WQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVK 288 (647)
Q Consensus 212 ~~yD~~t~~-W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~v~ 288 (647)
.+||+.+.. |..+.... .....-.+++.. ++.+++.|+.++. +.+||+.+.. |..+.
T Consensus 80 ~vwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~~~~~~~ 139 (377)
T 3dwl_C 80 YVYEKRPDGTWKQTLVLL----RLNRAATFVRWSPNEDKFAVGSGARV----------------ISVCYFEQENDWWVSK 139 (377)
T ss_dssp EEC------CCCCEEECC----CCSSCEEEEECCTTSSCCEEEESSSC----------------EEECCC-----CCCCE
T ss_pred EEEEcCCCCceeeeeEec----ccCCceEEEEECCCCCEEEEEecCCe----------------EEEEEECCcccceeee
Confidence 888888766 54433321 111112222222 5667777776554 6677766543 32222
Q ss_pred cCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 289 KIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 289 ~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
.... +....-.++++. ++.+++.|+.. ..|.+||+.+.
T Consensus 140 ~~~~-~h~~~v~~~~~~~~~~~l~~~~~d--------------~~i~iwd~~~~ 178 (377)
T 3dwl_C 140 HLKR-PLRSTILSLDWHPNNVLLAAGCAD--------------RKAYVLSAYVR 178 (377)
T ss_dssp EECS-SCCSCEEEEEECTTSSEEEEEESS--------------SCEEEEEECCS
T ss_pred Eeec-ccCCCeEEEEEcCCCCEEEEEeCC--------------CEEEEEEEEec
Confidence 2110 111222233333 56677777643 34888887644
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=88.73 E-value=21 Score=35.86 Aligned_cols=175 Identities=10% Similarity=0.070 Sum_probs=88.9
Q ss_pred CCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE
Q 006384 109 EKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL 187 (647)
Q Consensus 109 ~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~ 187 (647)
...+|+.+..+ ......++... .+.+|++|-. ..+++-.-.-.+|+.+.............++.
T Consensus 23 ~g~~W~~~~~~---~~~~~~~v~~~~~~~~~~~G~~------------g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~ 87 (327)
T 2xbg_A 23 DYNPWEAIQLP---TTATILDMSFIDRHHGWLVGVN------------ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSF 87 (327)
T ss_dssp SSCCEEEEECS---CSSCEEEEEESSSSCEEEEETT------------TEEEEESSTTSSCEECCCCCSCCCCEEEEEEE
T ss_pred CCCCceEeecC---CCCcEEEEEECCCCcEEEEcCC------------CeEEEeCCCCCCCeECCCCCCCCCccEEEEEe
Confidence 45689988642 22233333333 4678886531 22444333345899986521111222334444
Q ss_pred ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEE-eCCEEEEEecccCCCCCcccCCC
Q 006384 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV-YQDEVFLYGGYSKEVSTDKNQSE 266 (647)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~-~~~~Iyv~GG~~~~~~~~~~~~~ 266 (647)
..+.+|+.|.. ..+++-.=.-..|+.+.... +.+-..+.++. -++.+|+.|.. ..
T Consensus 88 ~~~~~~~~g~~----------g~i~~S~DgG~tW~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~-g~--------- 143 (327)
T 2xbg_A 88 QGNEGWIVGEP----------PIMLHTTDGGQSWSQIPLDP----KLPGSPRLIKALGNGSAEMITNV-GA--------- 143 (327)
T ss_dssp ETTEEEEEEET----------TEEEEESSTTSSCEECCCCT----TCSSCEEEEEEEETTEEEEEETT-CC---------
T ss_pred cCCeEEEEECC----------CeEEEECCCCCCceECcccc----CCCCCeEEEEEECCCCEEEEeCC-cc---------
Confidence 57788887531 12333222246899986531 11111233333 36788887742 11
Q ss_pred CCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECC-CCcEE
Q 006384 267 KGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWY 344 (647)
Q Consensus 267 ~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~-t~~W~ 344 (647)
+++-.=...+|+.+.. |.+...+++++. ++.+|++|-. ..+|+-.-. ...|.
T Consensus 144 -------v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~---------------G~~~~S~d~gG~tW~ 197 (327)
T 2xbg_A 144 -------IYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR---------------GSFYSTWEPGQTAWE 197 (327)
T ss_dssp -------EEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT---------------SSEEEEECTTCSSCE
T ss_pred -------EEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC---------------CcEEEEeCCCCCcee
Confidence 4443334668999864 222234445444 4566665521 225554433 46898
Q ss_pred EeEe
Q 006384 345 PLEL 348 (647)
Q Consensus 345 ~l~~ 348 (647)
.+..
T Consensus 198 ~~~~ 201 (327)
T 2xbg_A 198 PHNR 201 (327)
T ss_dssp EEEC
T ss_pred ECCC
Confidence 8754
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=2 Score=51.90 Aligned_cols=189 Identities=10% Similarity=0.075 Sum_probs=94.8
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCcc
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~ 151 (647)
+++.| ++.++++|+. + +.++.|+..+.......... ......+.+ ++..++.||..
T Consensus 967 ~~~sp--~g~~l~~g~~--~-------g~i~i~d~~~~~~~~~~~~h----~~~v~~l~~s~dg~~l~s~~~d------- 1024 (1249)
T 3sfz_A 967 CCLSP--HLEYVAFGDE--D-------GAIKIIELPNNRVFSSGVGH----KKAVRHIQFTADGKTLISSSED------- 1024 (1249)
T ss_dssp EEECT--TSSEEEEEET--T-------SCCEEEETTTTSCEEECCCC----SSCCCCEEECSSSSCEEEECSS-------
T ss_pred EEEcC--CCCEEEEEcC--C-------CCEEEEEcCCCceeeecccC----CCceEEEEECCCCCEEEEEcCC-------
Confidence 34444 5666677762 2 35778888776544332211 111112222 45666777642
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCC
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (647)
..+.+||+.+.....+.. ....-..++...+..++.|+.. ..+.+||+.+.+-...-..
T Consensus 1025 ----g~i~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~---- 1083 (1249)
T 3sfz_A 1025 ----SVIQVWNWQTGDYVFLQA----HQETVKDFRLLQDSRLLSWSFD---------GTVKVWNVITGRIERDFTC---- 1083 (1249)
T ss_dssp ----SBEEEEETTTTEEECCBC----CSSCEEEEEECSSSEEEEEESS---------SEEEEEETTTTCCCEEEEC----
T ss_pred ----CEEEEEECCCCceEEEec----CCCcEEEEEEcCCCcEEEEECC---------CcEEEEECCCCceeEEEcc----
Confidence 458899998887654332 1122223333344444555542 4688899887654322111
Q ss_pred CCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE--CCe
Q 006384 232 WPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKR 308 (647)
Q Consensus 232 ~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~--~~~ 308 (647)
.... -.+++.. ++.+++.|+.++. +.+||+.+.. .+.. .........++.+ ++.
T Consensus 1084 -~~~~-v~~~~~s~d~~~l~s~s~d~~----------------v~iwd~~~~~--~~~~---l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1084 -HQGT-VLSCAISSDATKFSSTSADKT----------------AKIWSFDLLS--PLHE---LKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp -CSSC-CCCEEECSSSSSCEEECCSSC----------------CCEECSSSSS--CSBC---CCCCSSCEEEEEECSSSS
T ss_pred -cCCc-EEEEEECCCCCEEEEEcCCCc----------------EEEEECCCcc--eeee---eccCCCcEEEEEECCCCC
Confidence 1111 1122222 6667777776654 5566665432 1111 1111111222222 677
Q ss_pred EEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 309 iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+++.|+.+ ..|.+||+.+.+
T Consensus 1141 ~lat~~~d--------------g~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1141 LLATGDDN--------------GEIRIWNVSDGQ 1160 (1249)
T ss_dssp EEEEEETT--------------SCCCEEESSSSC
T ss_pred EEEEEeCC--------------CEEEEEECCCCc
Confidence 77877643 347888887654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=88.66 E-value=1.9 Score=45.37 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=15.1
Q ss_pred CCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
++.+++.|+.. ..|.+||+.+.
T Consensus 243 ~~~~l~s~~~d---------g~i~i~d~~~~ 264 (430)
T 2xyi_A 243 HESLFGSVADD---------QKLMIWDTRNN 264 (430)
T ss_dssp CTTEEEEEETT---------SEEEEEETTCS
T ss_pred CCCEEEEEeCC---------CeEEEEECCCC
Confidence 45677777642 46889998865
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=88.63 E-value=12 Score=36.79 Aligned_cols=109 Identities=11% Similarity=0.070 Sum_probs=53.6
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCc-ceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPR-SAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R-~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P 177 (647)
+.++.||+.+.+....... +... ..+.++.. +..+|+.++. -..+++||+.+.+-...-..+.+
T Consensus 11 ~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITI--ADAGPTPMVPMVAPGGRIAYATVNK-----------SESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp TEEEEEETTTTEEEEEEEC--TTCTTCCCCEEECTTSSEEEEEETT-----------TTEEEEEETTTCCEEEEEECCBT
T ss_pred CeEEEEECCCCcEEEEEEc--CCCCCCccceEEcCCCCEEEEEeCC-----------CCeEEEEECCCCCeEeeEEcCCc
Confidence 4788999988765432211 1110 11223332 3478887642 24699999988775432221101
Q ss_pred C--CcceeEEEEE-C-CEEEEEecccCCCCceee---eCcEEEEEcCCCceEE
Q 006384 178 S--PRSGHRMVLY-K-HKIIVFGGFYDTLREVRY---YNDLYVFDLDQFKWQE 223 (647)
Q Consensus 178 ~--~R~~h~~~~~-~-~~lyv~GG~~~~~~~~~~---~~dv~~yD~~t~~W~~ 223 (647)
. ...-+.+++. + ++||+......... ..+ .+.+++||+.+.+...
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~-~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLEL-THFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECS-SCEEECCCEEEEEETTTTEEEE
T ss_pred ccccccccceEECCCCCEEEEEeccccccc-ccccccCceEEEEECCCCcEEE
Confidence 0 0011223333 3 36776642110000 001 3689999998876543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=88.59 E-value=19 Score=40.74 Aligned_cols=150 Identities=13% Similarity=0.052 Sum_probs=82.0
Q ss_pred eCcEEEEECCCC--e-EEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCC--CcEEEcccC
Q 006384 100 YGDLYRYDVEKQ--E-WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--NQWEQLNLK 174 (647)
Q Consensus 100 ~ndl~~yd~~~~--~-W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t--~~W~~~~~~ 174 (647)
.+.+|.+|+.+. . |+.+.... ... ...+...++.||+...... ....++++|+.+ ..|..+.+.
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~--~~~-~~~~~~dg~~l~~~s~~~~--------~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDL--KAQ-WDFVDGVGDQLWFVSGDGA--------PLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSS--SSC-EEEEEEETTEEEEEECTTC--------TTCEEEEEECSSSSCEEEEEECC
T ss_pred cceEEEEECCCCCCcccEEecCCC--Cce-EEEEeccCCEEEEEECCCC--------CCCEEEEEeCCCCccccEEEecC
Confidence 468999999877 6 88886532 112 1222345778888764321 125699999988 579887642
Q ss_pred CCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CC-EEEEEe
Q 006384 175 GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QD-EVFLYG 252 (647)
Q Consensus 175 ~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~-~Iyv~G 252 (647)
. . ..-......+++|++...... ...++++++....-..+.. |....-..+... ++ .|++..
T Consensus 362 ~-~--~~l~~~~~~~~~lv~~~~~dg-------~~~l~~~~~~g~~~~~l~~------~~~~~v~~~~~s~d~~~l~~~~ 425 (741)
T 1yr2_A 362 S-K--DNLESVGIAGNRLFASYIHDA-------KSQVLAFDLDGKPAGAVSL------PGIGSASGLSGRPGDRHAYLSF 425 (741)
T ss_dssp C-S--SEEEEEEEEBTEEEEEEEETT-------EEEEEEEETTSCEEEECBC------SSSCEEEEEECCBTCSCEEEEE
T ss_pred C-C--CeEEEEEEECCEEEEEEEECC-------EEEEEEEeCCCCceeeccC------CCCeEEEEeecCCCCCEEEEEE
Confidence 1 1 111223344788887765432 4568888875543333321 211111112111 22 333322
Q ss_pred cccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
.+. ..-..++.||+.+...+.+..
T Consensus 426 -ss~------------~~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 426 -SSF------------TQPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp -EET------------TEEEEEEEEETTTTEEEECSC
T ss_pred -cCC------------CCCCEEEEEECCCCcEEEEec
Confidence 111 223568999998887766643
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.29 E-value=22 Score=35.47 Aligned_cols=65 Identities=3% Similarity=-0.140 Sum_probs=39.3
Q ss_pred CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCC
Q 006384 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (647)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~ 267 (647)
++.+++.|+.+ ..+.+||+.+.+-..+... .....-.+++.. ++.+++.|+.++.
T Consensus 138 ~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~-----~~~~~i~~~~~~pdg~~lasg~~dg~---------- 193 (343)
T 3lrv_A 138 NTEYFIWADNR---------GTIGFQSYEDDSQYIVHSA-----KSDVEYSSGVLHKDSLLLALYSPDGI---------- 193 (343)
T ss_dssp -CCEEEEEETT---------CCEEEEESSSSCEEEEECC-----CSSCCCCEEEECTTSCEEEEECTTSC----------
T ss_pred CCCEEEEEeCC---------CcEEEEECCCCcEEEEEec-----CCCCceEEEEECCCCCEEEEEcCCCE----------
Confidence 45667777753 4688999988776444322 111112233333 6778888887665
Q ss_pred CceeeeEEEEeCCCCe
Q 006384 268 GIIHSDLWSLDPRTWE 283 (647)
Q Consensus 268 ~~~~~dv~~yd~~t~~ 283 (647)
+.+||+.+..
T Consensus 194 ------i~iwd~~~~~ 203 (343)
T 3lrv_A 194 ------LDVYNLSSPD 203 (343)
T ss_dssp ------EEEEESSCTT
T ss_pred ------EEEEECCCCC
Confidence 7888887654
|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A | Back alignment and structure |
|---|
Probab=88.16 E-value=12 Score=35.89 Aligned_cols=104 Identities=13% Similarity=0.294 Sum_probs=55.1
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe-EE--EecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCcccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WK--VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHY 155 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~-W~--~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~ 155 (647)
++++|+|=|. .+|+++..... .. .+...-.-.|..--++... ++++|+|-|
T Consensus 40 ~g~~~fFkg~-----------~~Wr~~~~~~~~~~P~~I~~~wp~lp~~IDAA~~~~~~~k~yfFkG------------- 95 (218)
T 1gen_A 40 RGEIFFFKDR-----------FIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAG------------- 95 (218)
T ss_dssp TTEEEEEETT-----------EEEEESSTTSCCEEEEEGGGTCTTSCSCCSEEEEETTTTEEEEEET-------------
T ss_pred CCcEEEEECC-----------EEEEEeCCCCccCCCEEHHHhcCCCCCCccEEEEECCCCEEEEEeC-------------
Confidence 6889999883 56666654321 11 2222110112222233333 589999987
Q ss_pred CcEEEEECCCCc---EEEcccCCCCCC-cceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 156 KDFWMLDLKTNQ---WEQLNLKGCPSP-RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 156 ~dv~~yD~~t~~---W~~~~~~~~P~~-R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
+.+|+|+..+.. =..+...+.|.. ..-.++..+ ++++|+|-| +..|+||..+.
T Consensus 96 ~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-----------~~ywr~d~~~~ 154 (218)
T 1gen_A 96 NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-----------DKFWRYNEVKK 154 (218)
T ss_dssp TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-----------TEEEEEETTTT
T ss_pred CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-----------CEEEEEECccc
Confidence 568999852110 012222233332 122334443 689999987 35788998765
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=87.97 E-value=28 Score=36.32 Aligned_cols=209 Identities=10% Similarity=0.034 Sum_probs=109.7
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~ 148 (647)
-+.+++.+ ++.||+.... -+.+++||+.++.-..+.... ...+ ++.. ++.||+......
T Consensus 133 P~~la~d~--~g~lyv~d~~---------~~~I~~id~~~g~~~~~~~~~----~~~~-ia~~~~g~~l~~~d~~~~--- 193 (409)
T 3hrp_A 133 MWGIAAVG--NNTVLAYQRD---------DPRVRLISVDDNKVTTVHPGF----KGGK-PAVTKDKQRVYSIGWEGT--- 193 (409)
T ss_dssp EEEEEECS--TTEEEEEETT---------TTEEEEEETTTTEEEEEEETC----CBCB-CEECTTSSEEEEEBSSTT---
T ss_pred ceEEEEeC--CCCEEEEecC---------CCcEEEEECCCCEEEEeeccC----CCCc-eeEecCCCcEEEEecCCC---
Confidence 34556655 6789988761 147899999988776554321 1122 2222 456777654211
Q ss_pred CccccccCcEEEEECCCCc-EEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEec
Q 006384 149 QERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~-W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (647)
..+++|++.... ...+.....+....-+.+++. ++.||+... ...+++||+.+.....+.
T Consensus 194 -------~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~----------~~~I~~~d~~~~~~~~~~ 256 (409)
T 3hrp_A 194 -------HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS----------NKNFGRFNVKTQEVTLIK 256 (409)
T ss_dssp -------CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT----------TCEEEEEETTTCCEEEEE
T ss_pred -------ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC----------CCcEEEEECCCCCEEEEe
Confidence 268999987543 223311111112222334443 578998321 246999999887755552
Q ss_pred cCCCCCCCCCcee-e-eEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCC------
Q 006384 226 PRFGSMWPSPRSG-F-QFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPG------ 295 (647)
Q Consensus 226 ~~~~~~~P~~R~~-~-s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~------ 295 (647)
..... ...... + .+++. ++.||+..... +.|++|++... ...+...+..+.
T Consensus 257 ~~~~~--g~~~~~P~~~ia~~p~~g~lyv~d~~~----------------~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~ 317 (409)
T 3hrp_A 257 QLELS--GSLGTNPGPYLIYYFVDSNFYMSDQNL----------------SSVYKITPDGE-CEWFCGSATQKTVQDGLR 317 (409)
T ss_dssp ECCCC--SCCCCSSCCEEEEETTTTEEEEEETTT----------------TEEEEECTTCC-EEEEEECTTCCSCBCEEG
T ss_pred ccccc--CCCCCCccccEEEeCCCCEEEEEeCCC----------------CEEEEEecCCC-EEEEEeCCCCCCcCCCcc
Confidence 21100 111111 1 44444 58899875433 24888887765 222322110000
Q ss_pred --C--ceeeEEEEE-CCeEEEecc-eeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 296 --P--RAGFSMCVH-KKRALLFGG-VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 296 --~--R~~~s~~~~-~~~iyifGG-~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
. ..-.++++- ++.||+.-. . .+.|.+|++.+.....+.-
T Consensus 318 ~~~~~~~P~gia~d~dG~lyvad~~~--------------~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 318 EEALFAQPNGMTVDEDGNFYIVDGFK--------------GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp GGCBCSSEEEEEECTTCCEEEEETTT--------------TCEEEEEETTTTEEEEEEE
T ss_pred cccEeCCCeEEEEeCCCCEEEEeCCC--------------CCEEEEEECCCCEEEEEeC
Confidence 0 112334443 567888743 2 2569999977776655554
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=87.88 E-value=6.4 Score=40.01 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=58.1
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
..++++|+.+.+-+.+... ..+..+....- ++..++|....... .....+|.+|+.+.....+.. .+..
T Consensus 168 ~~l~~~d~~~g~~~~l~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~-----~~~~~l~~~d~~~~~~~~l~~--~~~~ 237 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQE---NQWLGHPIYRPYDDSTVAFCHEGPHD-----LVDARMWLINEDGTNMRKVKT--HAEG 237 (388)
T ss_dssp EEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCTT-----TSSCSEEEEETTSCCCEESCC--CCTT
T ss_pred ceEEEEECCCCceEEeecC---CccccccEECCCCCCEEEEEEecCCC-----CCcceEEEEeCCCCceEEeee--CCCC
Confidence 5799999998877766532 11222222222 34444443321111 113689999998877666654 1111
Q ss_pred cceeEEEEE--CCE-EEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 180 RSGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 180 R~~h~~~~~--~~~-lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
. ......+ +++ |+......+. ....++++|+.+.+-..+...
T Consensus 238 ~-~~~~~~~spdg~~l~~~~~~~~~-----~~~~l~~~d~~~g~~~~l~~~ 282 (388)
T 3pe7_A 238 E-SCTHEFWVPDGSALVYVSYLKGS-----PDRFIYSADPETLENRQLTSM 282 (388)
T ss_dssp E-EEEEEEECTTSSCEEEEEEETTC-----CCEEEEEECTTTCCEEEEEEE
T ss_pred c-ccccceECCCCCEEEEEecCCCC-----CcceEEEEecCCCceEEEEcC
Confidence 1 1112223 454 4443322111 112599999999887776554
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=87.83 E-value=5.8 Score=39.53 Aligned_cols=116 Identities=10% Similarity=0.135 Sum_probs=58.8
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE----CCEEEEEeCCcCCCCC
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW----KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~----~~~iyv~GG~~~~~~~ 149 (647)
+.+.| ++.+++.|+. + ..+.+||+.+.....+.... .....-..+.+ ++.+++.|+..
T Consensus 19 v~~s~--~g~~lasgs~--D-------~~v~lwd~~~~~~~~~~~l~--gH~~~V~~v~~~~~~~~~~l~s~s~D----- 80 (316)
T 3bg1_A 19 AQMDY--YGTRLATCSS--D-------RSVKIFDVRNGGQILIADLR--GHEGPVWQVAWAHPMYGNILASCSYD----- 80 (316)
T ss_dssp EEECG--GGCEEEEEET--T-------TEEEEEEEETTEEEEEEEEE--CCSSCEEEEEECCGGGSSCEEEEETT-----
T ss_pred eeEcC--CCCEEEEEeC--C-------CeEEEEEecCCCcEEEEEEc--CCCccEEEEEeCCCCCCCEEEEEECC-----
Confidence 44444 5677777772 2 35777887766543222110 00111122333 25677777643
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--C--CEEEEEecccCCCCceeeeCcEEEEEcCCC-ceEEe
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K--HKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEI 224 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~--~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~-~W~~v 224 (647)
..+.+||+.+..|..+... ......-.++.+ + +.+++.|+.+ ..+.+||+.+. .|...
T Consensus 81 ------~~v~iWd~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~g~~lasgs~D---------~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 81 ------RKVIIWREENGTWEKSHEH--AGHDSSVNSVCWAPHDYGLILACGSSD---------GAISLLTYTGEGQWEVK 143 (316)
T ss_dssp ------SCEEEECCSSSCCCEEEEE--CCCSSCCCEEEECCTTTCSCEEEECSS---------SCEEEEEECSSSCEEEC
T ss_pred ------CEEEEEECCCCcceEEEEc--cCCCCceEEEEECCCCCCcEEEEEcCC---------CCEEEEecCCCCCccee
Confidence 3578889888776544321 111111122223 2 4567777653 35677777664 46543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=13 Score=44.80 Aligned_cols=150 Identities=13% Similarity=0.038 Sum_probs=78.1
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~ 150 (647)
++++.| ++.+++.||. + +.+.+||..+.+-...-.. ......++.+ ++.+++.|+..
T Consensus 620 ~~~~s~--~~~~l~s~~~--d-------~~i~vw~~~~~~~~~~~~~----h~~~v~~~~~s~~~~~l~s~~~d------ 678 (1249)
T 3sfz_A 620 HACFSQ--DGQRIASCGA--D-------KTLQVFKAETGEKLLDIKA----HEDEVLCCAFSSDDSYIATCSAD------ 678 (1249)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTCCEEEEECC----CSSCEEEEEECTTSSEEEEEETT------
T ss_pred EEEECC--CCCEEEEEeC--C-------CeEEEEECCCCCEEEEecc----CCCCEEEEEEecCCCEEEEEeCC------
Confidence 345555 5677777772 2 3688899988764432211 1112223333 45666666632
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE----CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~----~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
..+.+||+.+.+....-. .. ...-.++.+ +..+++.|+.+ ..+.+||+.+......-.
T Consensus 679 -----~~v~vwd~~~~~~~~~~~--~~--~~~v~~~~~~~~~~~~~l~sg~~d---------~~v~vwd~~~~~~~~~~~ 740 (1249)
T 3sfz_A 679 -----KKVKIWDSATGKLVHTYD--EH--SEQVNCCHFTNKSNHLLLATGSND---------FFLKLWDLNQKECRNTMF 740 (1249)
T ss_dssp -----SEEEEEETTTCCEEEEEE--CC--SSCEEEEEECSSSSCCEEEEEETT---------SCEEEEETTSSSEEEEEC
T ss_pred -----CeEEEEECCCCceEEEEc--CC--CCcEEEEEEecCCCceEEEEEeCC---------CeEEEEECCCcchhheec
Confidence 458899998876443322 11 111122233 23455555542 458889988876443221
Q ss_pred CCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCe
Q 006384 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
. ....-.+++.. ++.+++.|+.++. +.+||+.+..
T Consensus 741 ~------h~~~v~~~~~sp~~~~l~s~s~dg~----------------v~vwd~~~~~ 776 (1249)
T 3sfz_A 741 G------HTNSVNHCRFSPDDELLASCSADGT----------------LRLWDVRSAN 776 (1249)
T ss_dssp C------CSSCEEEEEECSSTTEEEEEESSSE----------------EEEEEGGGTE
T ss_pred C------CCCCEEEEEEecCCCEEEEEECCCe----------------EEEEeCCCCc
Confidence 1 11111222222 5667777776544 6777776554
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=87.70 E-value=17 Score=40.76 Aligned_cols=108 Identities=8% Similarity=0.032 Sum_probs=53.9
Q ss_pred cEEEEECCC-CcEEEcccCCCCCCcc-eeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 157 DFWMLDLKT-NQWEQLNLKGCPSPRS-GHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 157 dv~~yD~~t-~~W~~~~~~~~P~~R~-~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
.++++|+.+ ..-..+.... +.... ...+. -+++.++++...... ....|+++|+.+.+...+..........
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~-pDg~~l~~~~~~~~~----~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGK-EQDIYLARVNW-RDPQHLSFQRQSRDQ----KKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp EEEEECSSTTCCCEEECCCS-CSSEEEEEEEE-EETTEEEEEEEETTS----SEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred EEEEEECCCCCceEEecCCC-CcceEEEEEEe-CCCCEEEEEEecccC----CeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 789999988 7755554310 11111 11222 344444444332211 2467999999998877664431100000
Q ss_pred CceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 235 PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 235 ~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
....++.. ++++++.+..++ ...+|.+++... +..+
T Consensus 338 --~~~~~~~spdg~~~~~~~~~g--------------~~~l~~~~~~~~-~~~l 374 (741)
T 2ecf_A 338 --LHNSLRFLDDGSILWSSERTG--------------FQHLYRIDSKGK-AAAL 374 (741)
T ss_dssp --CCSCCEECTTSCEEEEECTTS--------------SCEEEEECSSSC-EEES
T ss_pred --cCCceEECCCCeEEEEecCCC--------------ccEEEEEcCCCC-eeee
Confidence 00122222 556666655432 145888887665 5544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.62 E-value=29 Score=38.67 Aligned_cols=95 Identities=9% Similarity=0.021 Sum_probs=48.0
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~ 234 (647)
..|.+||+.+..-...-. ....... +++. -++.+++.||.+ ..|.+||+.+.+- +... ..
T Consensus 541 ~~v~vwd~~~~~~~~~~~--~h~~~v~-~v~~spdg~~l~sg~~D---------g~i~iwd~~~~~~--~~~~-----~~ 601 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTLA--GHTGYVS-TVAVSPDGSLCASGGKD---------GVVLLWDLAEGKK--LYSL-----EA 601 (694)
T ss_dssp SCEEEEETTTCCEEEEEC--CCSSCEE-EEEECTTSSEEEEEETT---------SBCEEEETTTTEE--EECC-----BC
T ss_pred CeEEEEECCCCcEEEEEc--CCCCCEE-EEEEeCCCCEEEEEeCC---------CeEEEEECCCCce--EEEe-----cC
Confidence 457888988765433211 1111111 2222 256777777753 3577888877643 2222 11
Q ss_pred CceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEE
Q 006384 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (647)
Q Consensus 235 ~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (647)
...-++++...+..++.++.... +.+||+.+..-.
T Consensus 602 ~~~v~~~~~sp~~~~l~~~~~~~----------------i~iwd~~~~~~~ 636 (694)
T 3dm0_A 602 NSVIHALCFSPNRYWLCAATEHG----------------IKIWDLESKSIV 636 (694)
T ss_dssp SSCEEEEEECSSSSEEEEEETTE----------------EEEEETTTTEEE
T ss_pred CCcEEEEEEcCCCcEEEEEcCCC----------------EEEEECCCCCCh
Confidence 12233444444444555554322 677887766543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=87.61 E-value=24 Score=38.84 Aligned_cols=124 Identities=12% Similarity=0.153 Sum_probs=69.3
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEEC-CCC--cEEEcccCCC---CCC---cceeEEEEECCEEEEEecccC
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTN--QWEQLNLKGC---PSP---RSGHRMVLYKHKIIVFGGFYD 200 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~-~t~--~W~~~~~~~~---P~~---R~~h~~~~~~~~lyv~GG~~~ 200 (647)
-++.++.||+.... ...|+.||. .++ .|+.-..... +.. ....+.++.+++||+...
T Consensus 58 P~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--- 123 (571)
T 2ad6_A 58 PLVIGDMMYVHSAF-----------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--- 123 (571)
T ss_dssp CEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---
T ss_pred cEEECCEEEEEeCC-----------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---
Confidence 35669999998652 146899998 776 4876433110 000 112234667889888643
Q ss_pred CCCceeeeCcEEEEEcCCC--ceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEe
Q 006384 201 TLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (647)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (647)
-..|+.+|..+. .|+.-..... .......+.++.++.||+-.+.... .....++.||
T Consensus 124 -------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v~~g~v~vg~~~~~~-----------~~~g~v~a~D 182 (571)
T 2ad6_A 124 -------NGHLLALDAKTGKINWEVEVCDPK---VGSTLTQAPFVAKDTVLMGCSGAEL-----------GVRGAVNAFD 182 (571)
T ss_dssp -------TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEEETTEEEEECBCGGG-----------TCCCEEEEEE
T ss_pred -------CCEEEEEECCCCCEEEEecCCCCC---ccceeccCCEEECCEEEEEecCCcc-----------CCCCEEEEEE
Confidence 246899999876 4875422100 0001122334568888765432110 1124589999
Q ss_pred CCCC--eEEEee
Q 006384 279 PRTW--EWSKVK 288 (647)
Q Consensus 279 ~~t~--~W~~v~ 288 (647)
+.+. .|+.-.
T Consensus 183 ~~tG~~~W~~~~ 194 (571)
T 2ad6_A 183 LKTGELKWRAFA 194 (571)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEEcc
Confidence 8654 687653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=87.51 E-value=21 Score=40.19 Aligned_cols=123 Identities=13% Similarity=0.093 Sum_probs=69.9
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCc--EEEcccCCCC---C---CcceeEEEEECCEEEEEecccCC
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP---S---PRSGHRMVLYKHKIIVFGGFYDT 201 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~--W~~~~~~~~P---~---~R~~h~~~~~~~~lyv~GG~~~~ 201 (647)
-++.++.||+... ...|+.||..+++ |+.-...... . .....+.++.+++||+...
T Consensus 62 P~v~~g~vyv~~~------------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---- 125 (668)
T 1kv9_A 62 PLFHDGVIYTSMS------------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---- 125 (668)
T ss_dssp CEEETTEEEEEEG------------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT----
T ss_pred CEEECCEEEEECC------------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC----
Confidence 3567999999864 2468899988774 8764331100 0 0011234567888887532
Q ss_pred CCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeC
Q 006384 202 LREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDP 279 (647)
Q Consensus 202 ~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~ 279 (647)
-..|+.||..+.+ |+.-...+. .......+.++.++.||+-.+.... .....++.||+
T Consensus 126 ------dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v~~~~v~vg~~~~~~-----------~~~g~v~a~D~ 185 (668)
T 1kv9_A 126 ------DGRLIALDAKTGKAIWSQQTTDPA---KPYSITGAPRVVKGKVIIGNGGAEY-----------GVRGFVSAYDA 185 (668)
T ss_dssp ------TSEEEEEETTTCCEEEEEECSCTT---SSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEET
T ss_pred ------CCEEEEEECCCCCEeeeeccCCCC---CcceecCCCEEECCEEEEeCCCCCc-----------CCCCEEEEEEC
Confidence 2468999998765 886543210 1112222345568887764322110 12345899998
Q ss_pred CCC--eEEEee
Q 006384 280 RTW--EWSKVK 288 (647)
Q Consensus 280 ~t~--~W~~v~ 288 (647)
.+. .|+.-.
T Consensus 186 ~tG~~~W~~~~ 196 (668)
T 1kv9_A 186 DTGKLAWRFYT 196 (668)
T ss_dssp TTCCEEEEEES
T ss_pred CCCcEEEEecc
Confidence 654 688653
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=87.44 E-value=20 Score=36.42 Aligned_cols=103 Identities=10% Similarity=0.014 Sum_probs=51.5
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDL 211 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv 211 (647)
++.+++.++..... ...++.++.....+..............-.++.+ ++++++.|+.+ ..|
T Consensus 230 dg~~l~~~s~d~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D---------~~V 293 (365)
T 4h5i_A 230 DDTVLIAASLKKGK-------GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND---------NSI 293 (365)
T ss_dssp TTEEEEEEEESSSC-------CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT---------SCE
T ss_pred CCCEEEEEecCCcc-------eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC---------CEE
Confidence 67777777644321 1246677776665543322111111111122223 67888888753 468
Q ss_pred EEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 212 ~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
.+||+.+.+-...... -....-.+++.. ++.+++-|+.+..
T Consensus 294 ~iwd~~~~~~~~~~~~-----gH~~~V~~v~fSpdg~~laS~S~D~t 335 (365)
T 4h5i_A 294 ALVKLKDLSMSKIFKQ-----AHSFAITEVTISPDSTYVASVSAANT 335 (365)
T ss_dssp EEEETTTTEEEEEETT-----SSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred EEEECCCCcEEEEecC-----cccCCEEEEEECCCCCEEEEEeCCCe
Confidence 8999987653221111 001111122222 6778888877654
|
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.77 E-value=18 Score=33.84 Aligned_cols=101 Identities=18% Similarity=0.313 Sum_probs=54.2
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCe---EEEecC--CCCCCCcceeEEEE-ECCEEEEEeCCcCCCCCccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE---WKVISS--PNSPPPRSAHQAVS-WKNYLYIFGGEFTSPNQERFHH 154 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~---W~~l~s--~~~P~~R~~ha~v~-~~~~iyv~GG~~~~~~~~~~~~ 154 (647)
++++|+|-|. .+|+++..... =+.|.. +.+|. .--++.. .++++|+|-|
T Consensus 15 ~g~~~fFkg~-----------~~w~~~~~~~~~gyP~~I~~~w~glP~--~iDAa~~~~~g~~yfFkg------------ 69 (196)
T 3c7x_A 15 RGEMFVFKER-----------WFWRVRNNQVMDGYPMPIGQFWRGLPA--SINTAYERKDGKFVFFKG------------ 69 (196)
T ss_dssp TTEEEEEETT-----------EEEEEETTEECTTCSEEHHHHSTTCCS--SCCEEEECTTSCEEEEET------------
T ss_pred CCEEEEEECC-----------EEEEEECCccCCCCceEhhHhccCCCC--CccEEEEeCCCcEEEecC------------
Confidence 6899999983 57777543100 011211 12332 1222222 2678999987
Q ss_pred cCcEEEEECCCCc---EEEcccC--CCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 155 YKDFWMLDLKTNQ---WEQLNLK--GCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 155 ~~dv~~yD~~t~~---W~~~~~~--~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
+.+|+|+..+.. =..+... ++|..... ++..+ ++++|+|-| +..|+||..+.
T Consensus 70 -~~yw~~~~~~~~~gyPk~I~~~~~glP~~~ID-AA~~~~~~g~~yfFkG-----------~~yw~yd~~~~ 128 (196)
T 3c7x_A 70 -DKHWVFDEASLEPGYPKHIKELGRGLPTDKID-AALFWMPNGKTYFFRG-----------NKYYRFNEELR 128 (196)
T ss_dssp -TEEEEEETTEECTTCSEEGGGTCBSCCSSCCS-EEEEETTTTEEEEEET-----------TEEEEEETTTT
T ss_pred -CEEEEEeCCcccCCCCeEhhhcCCCCCCCccc-EEEEEccCCEEEEEEC-----------CEEEEEeCCcc
Confidence 467999854211 1123322 23433222 33333 589999977 35789998764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=86.76 E-value=7.6 Score=42.43 Aligned_cols=96 Identities=9% Similarity=-0.031 Sum_probs=53.1
Q ss_pred EEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcce
Q 006384 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSG 182 (647)
Q Consensus 103 l~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~ 182 (647)
+..||+.+.+.+.+... |. ...+ ..-+++.+++++..... ...+|++|+.+..+..+... + ...
T Consensus 134 ~~l~d~~~g~~~~l~~~--~~--~~~~-~spDG~~la~~~~~~~~-------~~~i~~~d~~~g~~~~l~~~--~-~~~- 197 (582)
T 3o4h_A 134 VALYALDGGGLRELARL--PG--FGFV-SDIRGDLIAGLGFFGGG-------RVSLFTSNLSSGGLRVFDSG--E-GSF- 197 (582)
T ss_dssp EEEEEEETTEEEEEEEE--SS--CEEE-EEEETTEEEEEEEEETT-------EEEEEEEETTTCCCEEECCS--S-CEE-
T ss_pred ceEEEccCCcEEEeecC--CC--ceEE-ECCCCCEEEEEEEcCCC-------CeEEEEEcCCCCCceEeecC--C-Ccc-
Confidence 34678888887777542 12 2222 22245555554433221 14599999999998877541 1 111
Q ss_pred eEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceE
Q 006384 183 HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (647)
Q Consensus 183 h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (647)
....+ +++.++.+...+ ...|+++|+.+.+..
T Consensus 198 -~~~~~SpDG~~l~~~~~~~-------~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 198 -SSASISPGMKVTAGLETAR-------EARLVTVDPRDGSVE 231 (582)
T ss_dssp -EEEEECTTSCEEEEEECSS-------CEEEEEECTTTCCEE
T ss_pred -ccceECCCCCEEEEccCCC-------eeEEEEEcCCCCcEE
Confidence 22333 455444333211 247999999998877
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=86.63 E-value=9.7 Score=37.85 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=20.0
Q ss_pred CCeEEEecceeccccCccccccccCCcEEEEECC-CCcEEEeEec
Q 006384 306 KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLD-NHRWYPLELR 349 (647)
Q Consensus 306 ~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~-t~~W~~l~~~ 349 (647)
++.+++.||.+ ..|.+|++. ...|..+...
T Consensus 273 ~g~~las~~~D--------------~~v~lw~~~~~g~~~~~~~~ 303 (316)
T 3bg1_A 273 TANILAVSGGD--------------NKVTLWKESVDGQWVCISDV 303 (316)
T ss_dssp TTCCEEEEESS--------------SCEEEEEECTTSCEEEEEEC
T ss_pred CCCEEEEEcCC--------------CeEEEEEECCCCcEEEeeec
Confidence 56677777643 347777765 5689888763
|
| >3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* | Back alignment and structure |
|---|
Probab=86.61 E-value=33 Score=35.79 Aligned_cols=215 Identities=14% Similarity=0.176 Sum_probs=109.8
Q ss_pred CCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcE--EEEEC----CCC-cEEEcccCCCCCCcce
Q 006384 110 KQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF--WMLDL----KTN-QWEQLNLKGCPSPRSG 182 (647)
Q Consensus 110 ~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv--~~yD~----~t~-~W~~~~~~~~P~~R~~ 182 (647)
.+.|+...-+..|..-.-|+.+.+++.-|.+|=..+.... +.+ ..|.. -.. .=+.++.. .-..-+-
T Consensus 269 ~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~P------Re~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsE 341 (670)
T 3ju4_A 269 KSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAP------REVGLFYFPDAFNSPSNYVRRQIPSE-YEPDASE 341 (670)
T ss_dssp TSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSS------CEEEEEEETTTTTCTTCCEEEECCGG-GCTTEEE
T ss_pred cCCceecccccccceeeeeeeeEecCCceEEEeccCCCCc------ceeeEEEecccccCCcceeeeechhh-hcccccc
Confidence 3456655555566677789999998888888844333222 222 22211 111 11223221 1222233
Q ss_pred eEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCC---
Q 006384 183 HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS--- 259 (647)
Q Consensus 183 h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~--- 259 (647)
.+.-.+++.||++---... ...-+.+.+-+.....|..+.... -......-++..++.||+||--....-
T Consensus 342 PCvkyYdgvLyLtTRgt~~---~~~GS~L~rs~d~Gq~w~slrfp~----nvHhtnlPFakvgD~l~mFgsERA~nEWE~ 414 (670)
T 3ju4_A 342 PCIKYYDGVLYLITRGTRG---DRLGSSLHRSRDIGQTWESLRFPH----NVHHTTLPFAKVGDDLIMFGSERAENEWEA 414 (670)
T ss_dssp EEEEEETTEEEEEEEESCT---TSCCCEEEEESSTTSSCEEEECTT----CCCSSCCCEEEETTEEEEEEECSSTTCSST
T ss_pred chhhhhCCEEEEEecCcCC---CCCcceeeeecccCCchhheeccc----cccccCCCcceeCCEEEEEecccccccccc
Confidence 4556789999998532211 123456777777778899886541 122233345677999999996422100
Q ss_pred CcccCCCCCceeee-EEEEe-----CCCCeEEEeecC---CCCCCCceeeEEEEE-CCeE-EEecceecccc--------
Q 006384 260 TDKNQSEKGIIHSD-LWSLD-----PRTWEWSKVKKI---GMPPGPRAGFSMCVH-KKRA-LLFGGVVDMEM-------- 320 (647)
Q Consensus 260 ~~~~~~~~~~~~~d-v~~yd-----~~t~~W~~v~~~---g~~P~~R~~~s~~~~-~~~i-yifGG~~~~~~-------- 320 (647)
.....+..+.+-.. +.+.+ ...-.|..+... |..-..-.|.+.+++ ++.| |||||.+....
T Consensus 415 G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~ 494 (670)
T 3ju4_A 415 GAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSA 494 (670)
T ss_dssp TCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTT
T ss_pred CCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccc
Confidence 00111122222111 12223 344567777542 334444556665555 6666 48998654321
Q ss_pred CccccccccCCcEEEEEC
Q 006384 321 KGDVIMSLFLNELYGFQL 338 (647)
Q Consensus 321 ~~~~~~~~~~ndl~~yd~ 338 (647)
.........-.+||+|-+
T Consensus 495 k~~~~~~Ghp~dlY~~ri 512 (670)
T 3ju4_A 495 KDPFKSDGHPSDLYCYKM 512 (670)
T ss_dssp CCTTSTTCCCCEEEEEEE
T ss_pred cCccccCCCCcceEEEEE
Confidence 000112233457888865
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.11 E-value=27 Score=34.39 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=29.8
Q ss_pred CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceec
Q 006384 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVD 317 (647)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~ 317 (647)
++.+++.|+.++. +.+||+.+..-...-. .....-.++++. ++.+++.|+..+
T Consensus 284 ~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 284 VHGTLATVGSDGR----------------FSFWDKDARTKLKTSE----QLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp TTCCEEEEETTSC----------------EEEEETTTTEEEEECC----CCSSCEEEEEECTTSSCEEEEECCC
T ss_pred CCCEEEEEccCCe----------------EEEEECCCCcEEEEec----CCCCCceEEEECCCCCeEEEEeccc
Confidence 5667788877655 8889988765433211 111112233333 567777776543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=85.93 E-value=10 Score=38.43 Aligned_cols=91 Identities=10% Similarity=0.048 Sum_probs=48.2
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
.+..||+.+.....+..... ....-.+++.. ++.+++.|+.. ..+.+||+....-..+.. . .
T Consensus 142 ~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~---h--~ 204 (383)
T 3ei3_B 142 ATTLRDFSGSVIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDST-----------GRLLLLGLDGHEIFKEKL---H--K 204 (383)
T ss_dssp EEEEEETTSCEEEEEECCCC-SSCCEEEEEEETTTTEEEEEETT-----------SEEEEEETTSCEEEEEEC---S--S
T ss_pred EEEEEECCCCceEEEeccCC-CCCCeEEEEECCCCCEEEEECCC-----------CCEEEEECCCCEEEEecc---C--C
Confidence 57788888777666643221 11112222222 45566666642 468889985444333322 1 1
Q ss_pred ceeEEEEE--CCE-EEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 181 SGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 181 ~~h~~~~~--~~~-lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
..-.++.+ ++. +++.|+.+ ..+.+||+.+
T Consensus 205 ~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~ 236 (383)
T 3ei3_B 205 AKVTHAEFNPRCDWLMATSSVD---------ATVKLWDLRN 236 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEETT---------SEEEEEEGGG
T ss_pred CcEEEEEECCCCCCEEEEEeCC---------CEEEEEeCCC
Confidence 11122233 344 77777653 4688888876
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=85.65 E-value=43 Score=36.19 Aligned_cols=138 Identities=9% Similarity=0.023 Sum_probs=71.6
Q ss_pred CcEEEEEC--CCCcEEEcccCCCCCCcceeEEEEEC-CEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCC
Q 006384 156 KDFWMLDL--KTNQWEQLNLKGCPSPRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (647)
Q Consensus 156 ~dv~~yD~--~t~~W~~~~~~~~P~~R~~h~~~~~~-~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~ 232 (647)
..+|.+++ ....- .+.. .+..+ ..+...+ +.+++..+.. +.+.+||+.+.+-..+...
T Consensus 90 ~~l~~~~~~~~g~~~-~l~~--~~~~~--~~~~s~dg~~~~~~s~~~---------~~~~l~d~~~g~~~~l~~~----- 150 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQ-RLEA--VKPMR--ILSGVDTGEAVVFTGATE---------DRVALYALDGGGLRELARL----- 150 (582)
T ss_dssp EEEEEEETTSTTCCE-ECTT--SCSBE--EEEEEECSSCEEEEEECS---------SCEEEEEEETTEEEEEEEE-----
T ss_pred eEEEEEeccCCCccc-cccC--CCCce--eeeeCCCCCeEEEEecCC---------CCceEEEccCCcEEEeecC-----
Confidence 46888887 44332 3332 12122 2233343 4555555432 2334778888877777654
Q ss_pred CCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEE
Q 006384 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (647)
Q Consensus 233 P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyi 311 (647)
+. ....... +++.+++++.... ....+|++|+.+..+..+... .....+.+.. +++.++
T Consensus 151 ~~--~~~~~sp-DG~~la~~~~~~~------------~~~~i~~~d~~~g~~~~l~~~-----~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 151 PG--FGFVSDI-RGDLIAGLGFFGG------------GRVSLFTSNLSSGGLRVFDSG-----EGSFSSASISPGMKVTA 210 (582)
T ss_dssp SS--CEEEEEE-ETTEEEEEEEEET------------TEEEEEEEETTTCCCEEECCS-----SCEEEEEEECTTSCEEE
T ss_pred CC--ceEEECC-CCCEEEEEEEcCC------------CCeEEEEEcCCCCCceEeecC-----CCccccceECCCCCEEE
Confidence 22 2222222 5555555554322 123599999988888776431 1112233333 555554
Q ss_pred ecceeccccCccccccccCCcEEEEECCCCcEE
Q 006384 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 312 fGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
.+.... ...|+++|+.+....
T Consensus 211 ~~~~~~------------~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 211 GLETAR------------EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEECSS------------CEEEEEECTTTCCEE
T ss_pred EccCCC------------eeEEEEEcCCCCcEE
Confidence 322111 246999999988776
|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
Probab=85.64 E-value=12 Score=38.76 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=78.4
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeE--EEecC--CCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W--~~l~s--~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~ 154 (647)
++++|+|=|. .+|+++.....- ..+.. +.+| ..--++... ++.+|+|-|
T Consensus 190 ~g~~~fFkg~-----------~~Wr~~~~~~~~~p~~I~~~wpgLP--~~iDAa~~~~~~g~~~fFkg------------ 244 (365)
T 3ba0_A 190 GNKIFFFKDR-----------FFWLKVSERPKTSVNLISSLWPTLP--SGIEAAYEIEARNQVFLFKD------------ 244 (365)
T ss_dssp TTEEEEEETT-----------EEEECCSSCCCCCEEEHHHHCSSCC--SSCCEEEEEGGGTEEEEEET------------
T ss_pred CCeEEEEeCC-----------EEEEEcCCCccCCccchhhhccCCC--CCccEEEEecCCCEEEEEeC------------
Confidence 6888888873 456665443211 11111 1123 222233344 689999987
Q ss_pred cCcEEEEECCCCc--E-EEcccCCCCCCc-ceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 155 YKDFWMLDLKTNQ--W-EQLNLKGCPSPR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 155 ~~dv~~yD~~t~~--W-~~~~~~~~P~~R-~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
+.+|+|+..... + ..+...++|..- .--++..+ ++++|+|-| +..|+||..+.+-..--+..
T Consensus 245 -~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG-----------~~yw~yd~~~~~v~~gyPk~ 312 (365)
T 3ba0_A 245 -DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD-----------NQYWRYDERRQMMDPGYPKL 312 (365)
T ss_dssp -TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTTTEECSSCCCC
T ss_pred -CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC-----------CEEEEEeCCcceecCCCCcc
Confidence 457888654221 1 233333344421 22234444 579999977 45789987654311100000
Q ss_pred C--CCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 229 G--SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 229 ~--~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
- .-+..+..--++... ++.+|+|=|. ..|+||..+.+-..+
T Consensus 313 I~~~f~g~p~~iDaA~~~~~g~~YfFkg~------------------~ywr~d~~~~~v~~~ 356 (365)
T 3ba0_A 313 ITKNFQGIGPKIDAVFYSKNKYYYFFQGS------------------NQFEYDFLLQRITKT 356 (365)
T ss_dssp HHHHSTTCCSSCSEEEEETTTEEEEEETT------------------EEEEEETTTTEEEEE
T ss_pred hhhcCCCCCCccceeeEecCCcEEEEeCC------------------EEEEEECCccEEecc
Confidence 0 000111112233334 7889998773 378999888776553
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.64 E-value=29 Score=34.14 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=55.9
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
+.+++.|+. + ..+.+||+.+.......... .....-..+.+ ++.+++.|+.. ..+.
T Consensus 54 g~~l~~~~~--d-------g~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d-----------g~v~ 111 (368)
T 3mmy_A 54 GNFLIAGSW--A-------NDVRCWEVQDSGQTIPKAQQ--MHTGPVLDVCWSDDGSKVFTASCD-----------KTAK 111 (368)
T ss_dssp SEEEEEEET--T-------SEEEEEEECTTSCEEEEEEE--ECSSCEEEEEECTTSSEEEEEETT-----------SEEE
T ss_pred ceEEEEECC--C-------CcEEEEEcCCCCceeEEEec--cccCCEEEEEECcCCCEEEEEcCC-----------CcEE
Confidence 478888873 2 35788888763222111000 01111222333 45566666532 4688
Q ss_pred EEECCCCcEEEcccCCCCCCcceeEEEE---ECCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVL---YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 160 ~yD~~t~~W~~~~~~~~P~~R~~h~~~~---~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
+||+.+.....+.. .. ..-.+++. -++.+++.|+.+ ..+.+||+.+.+-
T Consensus 112 iwd~~~~~~~~~~~--~~--~~v~~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~ 163 (368)
T 3mmy_A 112 MWDLSSNQAIQIAQ--HD--APVKTIHWIKAPNYSCVMTGSWD---------KTLKFWDTRSSNP 163 (368)
T ss_dssp EEETTTTEEEEEEE--CS--SCEEEEEEEECSSCEEEEEEETT---------SEEEEECSSCSSC
T ss_pred EEEcCCCCceeecc--cc--CceEEEEEEeCCCCCEEEEccCC---------CcEEEEECCCCcE
Confidence 99998887655433 11 11122222 256777777753 4588899877653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=85.43 E-value=9.3 Score=38.68 Aligned_cols=113 Identities=11% Similarity=0.147 Sum_probs=59.6
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
..+|.+++....++.+... .+........+ ++..+++....... ....++++|+.++....+.. .+.
T Consensus 216 ~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~------~~~~l~~~d~~~g~~~~l~~--~~~ 284 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKEH---AEGESCTHEFWIPDGSAMAYVSYFKGQ------TDRVIYKANPETLENEEVMV--MPP 284 (396)
T ss_dssp CCCEEEETTSCCCEESSCC---CTTEEEEEEEECTTSSCEEEEEEETTT------CCEEEEEECTTTCCEEEEEE--CCS
T ss_pred ceEEEEECCCCceeEeecc---CCCccccceEECCCCCEEEEEecCCCC------ccceEEEEECCCCCeEEeee--CCC
Confidence 5799999988887776541 11212222233 34433333221111 11349999999888777654 221
Q ss_pred CcceeEEEEE-CCEEEEEecccCC--C-----CceeeeCcEEEEEcCCCceEEeccC
Q 006384 179 PRSGHRMVLY-KHKIIVFGGFYDT--L-----REVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 179 ~R~~h~~~~~-~~~lyv~GG~~~~--~-----~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
.. ....- +++++++++.... . ........++++|+.+.+...+...
T Consensus 285 --~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (396)
T 3c5m_A 285 --CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKH 338 (396)
T ss_dssp --EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEEC
T ss_pred --CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCC
Confidence 12 22222 5666666542100 0 0000135799999998887766544
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=84.99 E-value=54 Score=36.69 Aligned_cols=149 Identities=12% Similarity=0.033 Sum_probs=82.9
Q ss_pred CcEEEEECCCC--cEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCC---ceEEeccCCCC
Q 006384 156 KDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF---KWQEIKPRFGS 230 (647)
Q Consensus 156 ~dv~~yD~~t~--~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~---~W~~v~~~~~~ 230 (647)
+.+|++|+.+. .|..+... ...........+++||+...... ....|+.+|+.+. .|+.+.+..
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~---~~~~~~~~~~~g~~l~~~t~~~~------~~~~l~~~d~~~~~~~~~~~l~~~~-- 327 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGD---LDADVSLVDNKGSTLYLLTNRDA------PNRRLVTVDAANPGPAHWRDLIPER-- 327 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECS---SSSCEEEEEEETTEEEEEECTTC------TTCEEEEEETTSCCGGGCEEEECCC--
T ss_pred cEEEEEECCCCCCceEEEeCC---CCceEEEEeccCCEEEEEECCCC------CCCEEEEEeCCCCCccccEEEecCC--
Confidence 58999998776 67777541 11111123345789998876432 1357899998763 488776541
Q ss_pred CCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeE
Q 006384 231 MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRA 309 (647)
Q Consensus 231 ~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~i 309 (647)
.... .+...++.|++..-.+. ...++++++.......+.. |..........- ++..
T Consensus 328 ---~~~~--~~s~~g~~lv~~~~~~g--------------~~~l~~~d~~g~~~~~l~~----p~~~~~~~~~~~~d~~~ 384 (693)
T 3iuj_A 328 ---QQVL--TVHSGSGYLFAEYMVDA--------------TARVEQFDYEGKRVREVAL----PGLGSVSGFNGKHDDPA 384 (693)
T ss_dssp ---SSCE--EEEEETTEEEEEEEETT--------------EEEEEEECTTSCEEEEECC----SSSSEEEECCCCTTCSC
T ss_pred ---CCEE--EEEEECCEEEEEEEECC--------------eeEEEEEECCCCeeEEeec----CCCceEEeeecCCCCCE
Confidence 1112 45555777766543221 2458899988766555532 221111111111 2333
Q ss_pred EEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 310 yifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
++|.... ...-..+|.||+.+..+..+..
T Consensus 385 l~~~~ss----------~~tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 385 LYFGFEN----------YAQPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp EEEEEEC----------SSSCCEEEEECTTTCCEEEEEC
T ss_pred EEEEecC----------CCCCCEEEEEECCCCeEEEEEe
Confidence 3332211 1123679999999988877665
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=84.99 E-value=32 Score=34.06 Aligned_cols=112 Identities=10% Similarity=-0.064 Sum_probs=58.0
Q ss_pred CcEEEEECCCCeEEEecCCCCC----------------CCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEE
Q 006384 101 GDLYRYDVEKQEWKVISSPNSP----------------PPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLD 162 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P----------------~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD 162 (647)
+.+++|++.+..++.+...... ....-+.++.. ++.|||.... ..+++||
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------------~~i~~~d 107 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------------YHLSVVG 107 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------------TEEEEEC
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------------CCEEEEe
Confidence 4688999988777655321100 00123455555 5789987431 3478899
Q ss_pred CCCCcEEEcccCCCCC-CcceeEEEEE--CCEEEEEecccCCC-Cc-------eeeeCcEEEEEcCCCceEEe
Q 006384 163 LKTNQWEQLNLKGCPS-PRSGHRMVLY--KHKIIVFGGFYDTL-RE-------VRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 163 ~~t~~W~~~~~~~~P~-~R~~h~~~~~--~~~lyv~GG~~~~~-~~-------~~~~~dv~~yD~~t~~W~~v 224 (647)
+.+...+.+....... ...-+.+++- ++.||+.-...... +. ......+++||+.+.+...+
T Consensus 108 ~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 108 SEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp TTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 8877655553211000 1122233333 56888864211000 00 00125689999988766544
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=84.66 E-value=31 Score=33.71 Aligned_cols=144 Identities=10% Similarity=0.026 Sum_probs=69.7
Q ss_pred eEEEEeccCCCE-EEEEcCeecCCCcceeeCcEEEEEC-CCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETE-LILYGGEFYNGNKTYVYGDLYRYDV-EKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~-lyv~GG~~~~g~~~~~~ndl~~yd~-~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~ 149 (647)
.+++..| ++. +++.|+. + ..+.+||+ .+.....+... +....-.+++...+.+++.|+..
T Consensus 60 ~~~~~~~--~~~~~l~~~~~--d-------g~i~~wd~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~l~s~~~d----- 121 (342)
T 1yfq_A 60 LCCNFID--NTDLQIYVGTV--Q-------GEILKVDLIGSPSFQALTNN--EANLGICRICKYGDDKLIAASWD----- 121 (342)
T ss_dssp EEEEEEE--SSSEEEEEEET--T-------SCEEEECSSSSSSEEECBSC--CCCSCEEEEEEETTTEEEEEETT-----
T ss_pred EEEEECC--CCCcEEEEEcC--C-------CeEEEEEeccCCceEecccc--CCCCceEEEEeCCCCEEEEEcCC-----
Confidence 3445555 456 6667762 2 36889999 88777655431 01112223333335555666532
Q ss_pred ccccccCcEEEEECCCCc-------EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC-Cc-
Q 006384 150 ERFHHYKDFWMLDLKTNQ-------WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FK- 220 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~-------W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t-~~- 220 (647)
..+.+||+.+.. ...+.. ......-.+++...+. ++.|+. -..+.+||+.+ ..
T Consensus 122 ------~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~-l~~~~~---------d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 122 ------GLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSR-LIVGMN---------NSQVQWFRLPLCEDD 183 (342)
T ss_dssp ------SEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEECSSE-EEEEES---------TTEEEEEESSCCTTC
T ss_pred ------CeEEEEcccccccccccccCCeeeE--EeeCCceEEEEecCCc-EEEEeC---------CCeEEEEECCccccc
Confidence 357777765300 111222 1212222234444555 555553 24688899887 33
Q ss_pred -eEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCC
Q 006384 221 -WQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (647)
Q Consensus 221 -W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~ 257 (647)
....... ....-.+++.. ++.+++.|+.++.
T Consensus 184 ~~~~~~~~------~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 184 NGTIEESG------LKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp CCEEEECS------CSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred cceeeecC------CCCceeEEEECCCCCCEEEEEecCCc
Confidence 3222221 11122233333 4667777776543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=84.21 E-value=28 Score=35.41 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=70.9
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcce-eEEEEE---CCEEEEEecccCCCCceeeeCcEEEEEcCCC--ceEEeccCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSG-HRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFG 229 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~-h~~~~~---~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~--~W~~v~~~~~ 229 (647)
..+.+||+.+..-...-....+..... -..+.+ ++.+++.|+.+ ..+.+||+... .-..+...
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D---------~~v~~wd~~~~~~~~~~~~~h-- 248 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD---------TTVRLWDLRITSRAVRTYHGH-- 248 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT---------SCEEEEETTTTCCCCEEECCC--
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC---------CeEEEEECCCCCcceEEECCc--
Confidence 357889998876544322111221111 112222 56788888864 35778887532 11111111
Q ss_pred CCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCC--CCCc-eeeEEEEE
Q 006384 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP--PGPR-AGFSMCVH 305 (647)
Q Consensus 230 ~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~--P~~R-~~~s~~~~ 305 (647)
...-.+++.. ++.+++.|+.++. +.+||+.+..-...-..... .... .-.++++.
T Consensus 249 -----~~~v~~v~~~p~~~~l~s~s~D~~----------------i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 249 -----EGDINSVKFFPDGQRFGTGSDDGT----------------CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp -----SSCCCEEEECTTSSEEEEECSSSC----------------EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred -----CCCeEEEEEecCCCeEEEEcCCCe----------------EEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence 0111123333 5677888887765 77888877654333221000 0001 11233333
Q ss_pred -CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 306 -~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
++.+++.|+.+ ..|++||+.+..
T Consensus 308 ~~g~~l~~g~~d--------------g~i~vwd~~~~~ 331 (380)
T 3iz6_a 308 ISGRLLFAGYSN--------------GDCYVWDTLLAE 331 (380)
T ss_dssp SSSSEEEEECTT--------------SCEEEEETTTCC
T ss_pred CCCCEEEEEECC--------------CCEEEEECCCCc
Confidence 56777776542 458999987654
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
Probab=83.93 E-value=22 Score=37.97 Aligned_cols=149 Identities=15% Similarity=0.236 Sum_probs=78.3
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEE--ecCC--CCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV--ISSP--NSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHH 154 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~--l~s~--~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~ 154 (647)
++++|+|=|. .+|+++.....+.. |... .+| ..--++... ++.+|+|=|
T Consensus 272 ~ge~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~Wp~LP--~~iDAa~~~~~~g~~~fFKg------------ 326 (450)
T 1su3_A 272 RGEVMFFKDR-----------FYMRTNPFYPEVELNFISVFWPQLP--NGLEAAYEFADRDEVRFFKG------------ 326 (450)
T ss_dssp TTEEEEEETT-----------EEEECCTTSSSCEEEEGGGTCTTSC--SSCCEEEEEGGGTEEEEEET------------
T ss_pred CCeEEEEeCC-----------EEEEEcCCCCcccceehhHhccCCC--CCeeEEEEEcCCCeEEEEeC------------
Confidence 6899999884 45666655443331 2211 122 222233333 589999987
Q ss_pred cCcEEEEECCCC---cEEEcc-cCCCCCC-cceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCce-----E
Q 006384 155 YKDFWMLDLKTN---QWEQLN-LKGCPSP-RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-----Q 222 (647)
Q Consensus 155 ~~dv~~yD~~t~---~W~~~~-~~~~P~~-R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W-----~ 222 (647)
+.+|+|+..+. -=..+. ..+.|.. ..--++..+ ++++|+|-| +..|+||..+.+- .
T Consensus 327 -~~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-----------~~yw~yd~~~~~~~~gYPk 394 (450)
T 1su3_A 327 -NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-----------NKYWRYDEYKRSMDPGYPK 394 (450)
T ss_dssp -TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTTTEECSSCSE
T ss_pred -CEEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-----------CEEEEEeCCCccccCCCCc
Confidence 46788874321 011222 1233321 111233333 589999987 4688998764321 1
Q ss_pred EeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 223 EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
.|.....+ +|. .. -+++..++++|+|-|. ..|+||..+.+-...
T Consensus 395 ~I~~~fpg-ip~-~i-DAA~~~~g~~YFFkg~------------------~ywr~d~~~~~v~~~ 438 (450)
T 1su3_A 395 MIAHDFPG-IGH-KV-DAVFMKDGFFYFFHGT------------------RQYKFDPKTKRILTL 438 (450)
T ss_dssp EHHHHSTT-SCS-CC-SEEEEETTEEEEEETT------------------EEEEEETTTTEEEEE
T ss_pred chhhcCCC-CCC-Cc-cEEEEcCCeEEEEeCC------------------EEEEEECCcceEecc
Confidence 12111011 121 12 2333458999999774 378999877665543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=83.90 E-value=12 Score=39.01 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=33.0
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCc-EEEcccCCCCCCcceeEEEEE---CCEEEEEecccCCCCceeeeC
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYN 209 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~-W~~~~~~~~P~~R~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~ 209 (647)
++.+++.|+.. ..|.+||+.+.. ...+.. .......-.++.+ +..+++.|+.. .
T Consensus 243 ~~~~l~s~~~d-----------g~i~i~d~~~~~~~~~~~~--~~~~~~~v~~i~~~p~~~~~l~tg~~d---------g 300 (430)
T 2xyi_A 243 HESLFGSVADD-----------QKLMIWDTRNNNTSKPSHT--VDAHTAEVNCLSFNPYSEFILATGSAD---------K 300 (430)
T ss_dssp CTTEEEEEETT-----------SEEEEEETTCSCSSSCSEE--EECCSSCEEEEEECSSCTTEEEEEETT---------S
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCCCCcceeE--eecCCCCeEEEEeCCCCCCEEEEEeCC---------C
Confidence 45677776642 468899988652 111100 0011111223333 33478888753 4
Q ss_pred cEEEEEcCC
Q 006384 210 DLYVFDLDQ 218 (647)
Q Consensus 210 dv~~yD~~t 218 (647)
.|.+||+.+
T Consensus 301 ~v~vwd~~~ 309 (430)
T 2xyi_A 301 TVALWDLRN 309 (430)
T ss_dssp EEEEEETTC
T ss_pred eEEEEeCCC
Confidence 588898876
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.90 E-value=26 Score=36.26 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=13.1
Q ss_pred cceEEEEeccCCCEEEEEcC
Q 006384 70 SNCSLNINPLKETELILYGG 89 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG 89 (647)
..|++++.. +++||.+|-
T Consensus 116 ~~h~~al~~--~G~v~~wG~ 133 (389)
T 3kci_A 116 GKHCLALSS--EGEVYSWGE 133 (389)
T ss_dssp CSEEEEEET--TSCEEEEEC
T ss_pred CCeEEEEcC--CCCEEEEeC
Confidence 346666664 689999995
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=83.79 E-value=44 Score=34.74 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=12.0
Q ss_pred eeEEEEE-CCEEEEEeC
Q 006384 127 AHQAVSW-KNYLYIFGG 142 (647)
Q Consensus 127 ~ha~v~~-~~~iyv~GG 142 (647)
.|+++.. ++.||.+|-
T Consensus 131 ~h~~alt~~G~v~~wG~ 147 (406)
T 4d9s_A 131 SHCLAVTMEGEVQSWGR 147 (406)
T ss_dssp SEEEEEETTSCEEEEEC
T ss_pred hheEEEcCCCcEEEeCC
Confidence 5666665 689999994
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=83.73 E-value=27 Score=34.43 Aligned_cols=97 Identities=8% Similarity=-0.036 Sum_probs=50.2
Q ss_pred CEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEE
Q 006384 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 135 ~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
+.+++.|+.. ..+.+||+.+..-...-. .... .-.+++.. ++.+++.|+.+ ..+.
T Consensus 85 ~~~l~~~~~d-----------g~i~v~d~~~~~~~~~~~--~~~~-~i~~~~~~~~~~~~l~s~~~d---------g~i~ 141 (366)
T 3k26_A 85 HPLLAVAGSR-----------GIIRIINPITMQCIKHYV--GHGN-AINELKFHPRDPNLLLSVSKD---------HALR 141 (366)
T ss_dssp CEEEEEEETT-----------CEEEEECTTTCCEEEEEE--SCCS-CEEEEEECSSCTTEEEEEETT---------SCEE
T ss_pred CCEEEEecCC-----------CEEEEEEchhceEeeeec--CCCC-cEEEEEECCCCCCEEEEEeCC---------CeEE
Confidence 5677777743 458889988765332211 1111 11222222 55677777753 4688
Q ss_pred EEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCC
Q 006384 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~ 257 (647)
+||+.+.+-...-... ......-.+++.. ++.+++.|+.++.
T Consensus 142 iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~ 184 (366)
T 3k26_A 142 LWNIQTDTLVAIFGGV---EGHRDEVLSADYDLLGEKIMSCGMDHS 184 (366)
T ss_dssp EEETTTTEEEEEECST---TSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeecCeEEEEeccc---ccccCceeEEEECCCCCEEEEecCCCC
Confidence 9999877644432110 0111122223333 5667777776654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=83.13 E-value=35 Score=33.10 Aligned_cols=87 Identities=15% Similarity=0.042 Sum_probs=42.2
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEE-ecCCCCCC--CcceeEEEEE--CCEEEEEeCCcCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPP--PRSAHQAVSW--KNYLYIFGGEFTS 146 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~-l~s~~~P~--~R~~ha~v~~--~~~iyv~GG~~~~ 146 (647)
+.+++.|. +..||+.+.. .+.+++||+.+.+-.. +.... +. ...-+.++.. +..||+.......
T Consensus 37 ~~~~~s~d-g~~l~v~~~~---------~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 105 (337)
T 1pby_B 37 MVPMVAPG-GRIAYATVNK---------SESLVKIDLVTGETLGRIDLST-PEERVKSLFGAALSPDGKTLAIYESPVRL 105 (337)
T ss_dssp CCEEECTT-SSEEEEEETT---------TTEEEEEETTTCCEEEEEECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEE
T ss_pred cceEEcCC-CCEEEEEeCC---------CCeEEEEECCCCCeEeeEEcCC-cccccccccceEECCCCCEEEEEeccccc
Confidence 34555552 3477777652 2468999998876542 33211 00 0011222332 3467776421000
Q ss_pred CCCcccc-ccCcEEEEECCCCcEEE
Q 006384 147 PNQERFH-HYKDFWMLDLKTNQWEQ 170 (647)
Q Consensus 147 ~~~~~~~-~~~dv~~yD~~t~~W~~ 170 (647)
.... +. .-..+++||+.+.+...
T Consensus 106 ~~~~-~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 106 ELTH-FEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp CSSC-EEECCCEEEEEETTTTEEEE
T ss_pred cccc-ccccCceEEEEECCCCcEEE
Confidence 0000 00 12679999998876543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=83.03 E-value=13 Score=42.02 Aligned_cols=126 Identities=11% Similarity=0.117 Sum_probs=69.4
Q ss_pred EEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCC---CceeeeEEEeCCEEEEEecccCCCC
Q 006384 185 MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPS---PRSGFQFFVYQDEVFLYGGYSKEVS 259 (647)
Q Consensus 185 ~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~---~R~~~s~~~~~~~Iyv~GG~~~~~~ 259 (647)
-++.++.||+... .+.|+.||..+.+ |+.-........+. .....+.++.++.||+.. .+.
T Consensus 66 P~v~~g~vyv~~~----------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~-~dg--- 131 (689)
T 1yiq_A 66 PIVVDGVMYTTGP----------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGV-LDG--- 131 (689)
T ss_dssp CEEETTEEEEECG----------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-TTS---
T ss_pred CEEECCEEEEEcC----------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEc-cCC---
Confidence 3567999999764 2468999988754 88643321000000 001123456688887754 222
Q ss_pred CcccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEE
Q 006384 260 TDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (647)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd 337 (647)
.++.||..+. .|+...............+.++.++.+|+-.+... ...-..|+.||
T Consensus 132 -------------~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~---------~~~~g~v~a~D 189 (689)
T 1yiq_A 132 -------------RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAE---------FGVRGYVTAYD 189 (689)
T ss_dssp -------------EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTT---------TCCBCEEEEEE
T ss_pred -------------EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCc---------cCCCCEEEEEE
Confidence 3889998654 68875421100111222344567888877433211 01235699999
Q ss_pred CCCCc--EEEe
Q 006384 338 LDNHR--WYPL 346 (647)
Q Consensus 338 ~~t~~--W~~l 346 (647)
+.+.+ |+.-
T Consensus 190 ~~tG~~~W~~~ 200 (689)
T 1yiq_A 190 AETGKEAWRFY 200 (689)
T ss_dssp TTTCCEEEEEE
T ss_pred CCCCcEEEEec
Confidence 98875 8754
|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
Probab=82.90 E-value=21 Score=37.07 Aligned_cols=154 Identities=10% Similarity=0.144 Sum_probs=80.0
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcE--EEccc--CCCCCCcceeEEEEE--CCEEEEEecccCCC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW--EQLNL--KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W--~~~~~--~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~ 202 (647)
+++.+++.+|+|=| +-+|+++.....- ..+.. .++|. ... ++... ++++|+|-|
T Consensus 185 Av~~~~g~~~fFkg-------------~~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iD-Aa~~~~~~g~~~fFkg----- 244 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------------RFFWLKVSERPKTSVNLISSLWPTLPS-GIE-AAYEIEARNQVFLFKD----- 244 (365)
T ss_dssp CEEEETTEEEEEET-------------TEEEECCSSCCCCCEEEHHHHCSSCCS-SCC-EEEEEGGGTEEEEEET-----
T ss_pred eEEEcCCeEEEEeC-------------CEEEEEcCCCccCCccchhhhccCCCC-Ccc-EEEEecCCCEEEEEeC-----
Confidence 45556899999977 4577776543221 12211 12342 222 33333 789999977
Q ss_pred CceeeeCcEEEEEcCCCc--e-EEeccCCCCCCCCC-ceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEE
Q 006384 203 REVRYYNDLYVFDLDQFK--W-QEIKPRFGSMWPSP-RSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (647)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~--W-~~v~~~~~~~~P~~-R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (647)
+.+|+|+..... + ..|... .+|.. ..--++... ++++|+|-|. ..|+
T Consensus 245 ------~~yWr~~~~~~~~gyPk~I~~~---GlP~~~~~IDAA~~~~~~~~~yfFkG~------------------~yw~ 297 (365)
T 3ba0_A 245 ------DKYWLISNLRPEPNYPKSIHSF---GFPNFVKKIDAAVFNPRFYRTYFFVDN------------------QYWR 297 (365)
T ss_dssp ------TEEEECSTTSCTTTCSEETTTT---TCCTTCCCCCEEEEETTTTEEEEEETT------------------EEEE
T ss_pred ------CEEEEEcCCcccCCCCceeeec---cCCCCCCCcCEEEEeCCCCEEEEEECC------------------EEEE
Confidence 346777643211 1 122211 12321 111222233 5899999763 3789
Q ss_pred EeCCCCeEEEeec----CCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 277 LDPRTWEWSKVKK----IGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 277 yd~~t~~W~~v~~----~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
||..+.+-..--+ .+-+..+..--++... ++++|+|=| +..|+||..+.+-..
T Consensus 298 yd~~~~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg----------------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 298 YDERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQG----------------SNQFEYDFLLQRITK 355 (365)
T ss_dssp EETTTTEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEET----------------TEEEEEETTTTEEEE
T ss_pred EeCCcceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeC----------------CEEEEEECCccEEec
Confidence 9977654221000 0001112112234444 789999977 348999998876554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=82.87 E-value=26 Score=38.96 Aligned_cols=124 Identities=12% Similarity=0.146 Sum_probs=67.1
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEEC-CCC--cEEEcccCCC---CCCc---ceeEEEE--ECCE----EEE
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTN--QWEQLNLKGC---PSPR---SGHRMVL--YKHK----IIV 194 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~-~t~--~W~~~~~~~~---P~~R---~~h~~~~--~~~~----lyv 194 (647)
-++.++.||+.+.. ...|+.||. .+. .|+.-..... +..+ ...+.++ .+++ ||+
T Consensus 58 P~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v 126 (599)
T 1w6s_A 58 PLVVDGKMYIHTSF-----------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILK 126 (599)
T ss_dssp CEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEE
T ss_pred cEEECCEEEEEeCC-----------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEE
Confidence 35669999998652 146899999 776 4876543110 0011 1123344 5666 776
Q ss_pred EecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceee
Q 006384 195 FGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHS 272 (647)
Q Consensus 195 ~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~ 272 (647)
... -..|+.+|..+.+ |+.-..... +......+.++.++.|||-.+.... ....
T Consensus 127 ~t~----------dg~l~AlDa~TG~~~W~~~~~~~~---~~~~~~ssP~v~~g~V~vg~~g~e~-----------g~~g 182 (599)
T 1w6s_A 127 TQL----------DGNVAALNAETGETVWKVENSDIK---VGSTLTIAPYVVKDKVIIGSSGAEL-----------GVRG 182 (599)
T ss_dssp ECT----------TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEEETTEEEECCBCGGG-----------TCCC
T ss_pred EcC----------CCEEEEEECCCCCEEEeecCCCCC---ccceeecCCEEECCEEEEEeccccc-----------CCCC
Confidence 432 2468999988765 875422100 0001122334568877764321110 1234
Q ss_pred eEEEEeCCCC--eEEEee
Q 006384 273 DLWSLDPRTW--EWSKVK 288 (647)
Q Consensus 273 dv~~yd~~t~--~W~~v~ 288 (647)
.++.||+.+. .|+.-.
T Consensus 183 ~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 183 YLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEEETTTCCEEEEEES
T ss_pred eEEEEECCCCcEEEEEcC
Confidence 5889998754 587653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=82.51 E-value=30 Score=38.43 Aligned_cols=113 Identities=9% Similarity=-0.029 Sum_probs=59.0
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
.++.+|+.+.+-..+..... ........+.+ +++.++++........ ......++++|+.+.....+........
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~-~~~~~v~~~~~SpDg~~l~~~~~~~~~~~--~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 114 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKK-IESLRAIRYEISPDREYALFSYNVEPIYQ--HSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTT-TTTTTCSEEEECTTSSEEEEEESCCCCSS--SCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred CEEEEECCCCcEEEEecccc-ccccccceEEECCCCCEEEEEecCcccee--ecceeeEEEEECCCCceEeccCCccccc
Confidence 68888988876554443211 10001222333 4555566543222111 1234789999999887666654211111
Q ss_pred cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccC
Q 006384 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (647)
Q Consensus 180 R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~ 227 (647)
+..+.+..-+++.++|+.. +.|+++|+.+....++...
T Consensus 115 ~~~~~~~SPdG~~la~~~~----------~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE----------NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET----------TEEEEESSSSSCCEEEECC
T ss_pred cccccEECCCCCEEEEEEC----------CeEEEEECCCCceEEEecC
Confidence 1121222225555555542 3689999988877776543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=82.39 E-value=48 Score=34.07 Aligned_cols=74 Identities=8% Similarity=-0.086 Sum_probs=39.6
Q ss_pred CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCe--EEEecceeccccC
Q 006384 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR--ALLFGGVVDMEMK 321 (647)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~--iyifGG~~~~~~~ 321 (647)
+++|||....... .......+.++++|+.+.+-...-+ .+...+++++- +++ +|+..+.
T Consensus 278 ~~~lyV~~~~~~~-------~~~~~~~~~V~VID~~t~~vv~~i~-----~g~~p~~i~~s~Dg~~~l~v~~~~------ 339 (373)
T 2mad_H 278 SDGIYLLTSEQSA-------WKLHAAAKEVTSVTGLVGQTSSQIS-----LGHDVDAISVAQDGGPDLYALSAG------ 339 (373)
T ss_pred CCEEEEEeccCCc-------ccccCCCCeEEEEECCCCEEEEEEE-----CCCCcCeEEECCCCCeEEEEEcCC------
Confidence 6788887542111 0001123679999998876532212 22223444444 444 4443321
Q ss_pred ccccccccCCcEEEEECCCCcEE
Q 006384 322 GDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 322 ~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
.++|.+||+.+.+=.
T Consensus 340 --------~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 340 --------TEVLHIYDAGAGDQD 354 (373)
T ss_pred --------CCeEEEEECCCCCEE
Confidence 377999999876543
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
Probab=82.25 E-value=13 Score=39.91 Aligned_cols=153 Identities=10% Similarity=0.145 Sum_probs=79.4
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcc--cC--CCCCCcceeEEEEE--CCEEEEEecccCCC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN--LK--GCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~--~~--~~P~~R~~h~~~~~--~~~lyv~GG~~~~~ 202 (647)
+++.+.+.+|+|-| +-+|+++.....+.... .. ++|.. --++... ++++|+|=|.
T Consensus 267 Ai~~~~ge~y~Fkg-------------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~--iDAa~~~~~~g~~~fFKg~---- 327 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------------RFYMRTNPFYPEVELNFISVFWPQLPNG--LEAAYEFADRDEVRFFKGN---- 327 (450)
T ss_dssp EEEEETTEEEEEET-------------TEEEECCTTSSSCEEEEGGGTCTTSCSS--CCEEEEEGGGTEEEEEETT----
T ss_pred eEEecCCeEEEEeC-------------CEEEEEcCCCCcccceehhHhccCCCCC--eeEEEEEcCCCeEEEEeCC----
Confidence 55667899999988 35677776554443221 11 12321 2223332 6899999873
Q ss_pred CceeeeCcEEEEEcCCC--ce-EEec-cCCCCCCCC--CceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEE
Q 006384 203 REVRYYNDLYVFDLDQF--KW-QEIK-PRFGSMWPS--PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLW 275 (647)
Q Consensus 203 ~~~~~~~dv~~yD~~t~--~W-~~v~-~~~~~~~P~--~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~ 275 (647)
.+|+|+..+. .+ ..|. .. .+|. .....++... ++++|+|-|. ..|
T Consensus 328 -------~~W~~~~~~~~~gyP~~i~~~~---g~P~~~~~IDAA~~~~~~~k~yfFkG~------------------~yw 379 (450)
T 1su3_A 328 -------KYWAVQGQNVLHGYPKDIYSSF---GFPRTVKHIDAALSEENTGKTYFFVAN------------------KYW 379 (450)
T ss_dssp -------EEEEEETTEECTTCSEEHHHHH---CCCTTCCCCCEEEEETTTTEEEEEETT------------------EEE
T ss_pred -------EEEEecCCcccCCCceeeehhh---cCCCCCCccceEEEEcCCCeEEEEeCC------------------EEE
Confidence 4677764321 01 1111 00 0122 1222222222 6899999773 388
Q ss_pred EEeCCCCeEEE-----eecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 276 SLDPRTWEWSK-----VKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 276 ~yd~~t~~W~~-----v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
+||..+.+-.. +.. +.+-.+..--++...++++|+|-| +..|+||..+.+=..
T Consensus 380 ~yd~~~~~~~~gYPk~I~~-~fpgip~~iDAA~~~~g~~YFFkg----------------~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 380 RYDEYKRSMDPGYPKMIAH-DFPGIGHKVDAVFMKDGFFYFFHG----------------TRQYKFDPKTKRILT 437 (450)
T ss_dssp EEETTTTEECSSCSEEHHH-HSTTSCSCCSEEEEETTEEEEEET----------------TEEEEEETTTTEEEE
T ss_pred EEeCCCccccCCCCcchhh-cCCCCCCCccEEEEcCCeEEEEeC----------------CEEEEEECCcceEec
Confidence 99876543221 110 000111112233446899999987 347999987766443
|
| >1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=81.29 E-value=15 Score=35.12 Aligned_cols=101 Identities=19% Similarity=0.450 Sum_probs=55.8
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeE--EEecCC--CCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccC
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISSP--NSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYK 156 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W--~~l~s~--~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~ 156 (647)
++++|+|=|. .+|+|+.....+ ..|... .+| ..--++...++++|+|-| +
T Consensus 28 ~g~~yfFkg~-----------~~Wr~~~~~~~~~p~~Is~~wpgLP--~~IDAA~~~~~~~yfFkG-------------~ 81 (219)
T 1hxn_A 28 HGATYVFSGS-----------HYWRLDTNRDGWHSWPIAHQWPQGP--STVDAAFSWEDKLYLIQD-------------T 81 (219)
T ss_dssp TSCEEEEETT-----------EEEESSSSSCTTCCEEGGGTCTTSC--SSCSEEEEETTEEEEEET-------------T
T ss_pred CCcEEEEeCC-----------EEEEEcCCCCCCCceEhhhhccCCC--CCccEEEEECCcEEEecC-------------C
Confidence 6889998883 456666443221 122211 223 222344445899999977 5
Q ss_pred cEEEEECCCC-cE-----EEccc-CCCCCC--cc-eeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 157 DFWMLDLKTN-QW-----EQLNL-KGCPSP--RS-GHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 157 dv~~yD~~t~-~W-----~~~~~-~~~P~~--R~-~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
.+|+|+..++ +- ..+.. .|+|.. .. --+++.+ ++++|+|-| +..|+||..+
T Consensus 82 ~yw~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-----------~~ywr~d~~~ 144 (219)
T 1hxn_A 82 KVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-----------RRLWWLDLKS 144 (219)
T ss_dssp EEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-----------TEEEEEEGGG
T ss_pred EEEEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-----------CEEEEEeCCC
Confidence 6899986532 11 12221 233433 11 2233333 579999988 3578999765
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.04 E-value=50 Score=33.77 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=19.0
Q ss_pred cceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCe
Q 006384 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE 112 (647)
Q Consensus 70 ~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~ 112 (647)
.-.++.+.| ++.+++.|+. + ..+.+||+.+..
T Consensus 30 ~V~~v~~s~--~g~~la~g~~--d-------g~v~iw~~~~~~ 61 (447)
T 3dw8_B 30 IISTVEFNH--SGELLATGDK--G-------GRVVIFQQEQEN 61 (447)
T ss_dssp SEEEEEECS--SSSEEEEEET--T-------SEEEEEEECC--
T ss_pred cEEEEEECC--CCCEEEEEcC--C-------CeEEEEEecCCC
Confidence 334555555 6778888873 2 357777877654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=80.57 E-value=30 Score=38.49 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=46.2
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCcc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~ 151 (647)
.++.+.| +++.++++..............++++|+.+.+-+.+........+..+....-+++.++|+..
T Consensus 64 ~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-------- 133 (723)
T 1xfd_A 64 IRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-------- 133 (723)
T ss_dssp SEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--------
T ss_pred ceEEECC--CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--------
Confidence 4556666 566666665311111112346899999998876666543211111111111114544444431
Q ss_pred ccccCcEEEEECCCCcEEEccc
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNL 173 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~ 173 (647)
+.++++|+.+.....+..
T Consensus 134 ----~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 134 ----NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp ----TEEEEESSSSSCCEEEEC
T ss_pred ----CeEEEEECCCCceEEEec
Confidence 368888888877666544
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.52 E-value=1.1 Score=46.53 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=42.3
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
++.||+.+. + ..++++|..+. .|+.-. . +. . .+.+..++.+|+.++.. ..+
T Consensus 9 ~~~v~~gs~---d-------g~v~a~d~~tG~~~W~~~~-~--~~-~--s~p~~~~g~~~v~~s~d-----------g~l 61 (369)
T 2hz6_A 9 ETLLFVSTL---D-------GSLHAVSKRTGSIKWTLKE-D--PV-L--QVPTHVEEPAFLPDPND-----------GSL 61 (369)
T ss_dssp TTEEEEEET---T-------SEEEEEETTTCCEEEEEEC-C--CS-C--CCC-----CCEEECTTT-----------CCE
T ss_pred CCEEEEEcC---C-------CEEEEEECCCCCEEEEecC-C--Cc-e--ecceEcCCCEEEEeCCC-----------CEE
Confidence 566766543 1 36899998876 577543 1 11 1 12233456677776421 458
Q ss_pred EEEECCCC--cEEEcccCCCCCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEE
Q 006384 159 WMLDLKTN--QWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQE 223 (647)
Q Consensus 159 ~~yD~~t~--~W~~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~ 223 (647)
+.||..++ .|..-.. .+. ....+.++ .++.||+ |+. -..++.||+.+++ |+.
T Consensus 62 ~a~d~~tG~~~w~~~~~--~~~-~~~~sp~~~~~~~v~~-g~~---------dg~v~a~D~~tG~~~w~~ 118 (369)
T 2hz6_A 62 YTLGSKNNEGLTKLPFT--IPE-LVQASPCRSSDGILYM-GKK---------QDIWYVIDLLTGEKQQTL 118 (369)
T ss_dssp EEC-----CCSEECSCC--HHH-HHTTCSCC-----CCC-CEE---------EEEEEEECCC--------
T ss_pred EEEECCCCceeeeeecc--Ccc-ccccCceEecCCEEEE-EeC---------CCEEEEEECCCCcEEEEe
Confidence 89998765 4653211 010 00111112 3444543 332 2468899988654 654
|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} | Back alignment and structure |
|---|
Probab=80.29 E-value=6.7 Score=37.82 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=50.3
Q ss_pred ECCEEEEEeCCcCCCCCccccccCcEEEEECCC----CcEEE----ccc--CCCCCC----cceeEEEEE--CCEEEEEe
Q 006384 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT----NQWEQ----LNL--KGCPSP----RSGHRMVLY--KHKIIVFG 196 (647)
Q Consensus 133 ~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t----~~W~~----~~~--~~~P~~----R~~h~~~~~--~~~lyv~G 196 (647)
..+.+|+|-| +.+|+||..+ ..... +.. .++|.. ... ++..+ ++++|+|-
T Consensus 69 ~~g~~~fFkg-------------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~ID-AA~~~~~~gk~yfFk 134 (225)
T 3oyo_A 69 EASEAYVFSG-------------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSID-SAFRSTKGKEVYLFK 134 (225)
T ss_dssp STTEEEEEET-------------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCC-EEEECSSTTEEEEEE
T ss_pred CCCeEEEEcC-------------CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccc-eEEEECCCCcEEEEe
Confidence 3799999987 4689997643 22211 111 112321 122 23332 68999998
Q ss_pred cccCCCCceeeeCcEEEEEcCCCceEEeccCCCC-CCCC------CceeeeEEE--eCCEEEEEecc
Q 006384 197 GFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS-MWPS------PRSGFQFFV--YQDEVFLYGGY 254 (647)
Q Consensus 197 G~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~-~~P~------~R~~~s~~~--~~~~Iyv~GG~ 254 (647)
| +..|+||....+...- +.+-. .+|. +..--++.. .++++|+|-|.
T Consensus 135 G-----------~~yw~~d~~~~~~~~g-Pk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~ 189 (225)
T 3oyo_A 135 G-----------NKYVRIAYDSKQLVGN-IRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ 189 (225)
T ss_dssp T-----------TEEEEEETTTTEEEEE-EEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT
T ss_pred C-----------CeEEEEECCCCeecCC-CcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC
Confidence 8 3578998766544331 11000 0121 222223334 37899999874
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=80.13 E-value=47 Score=32.60 Aligned_cols=117 Identities=9% Similarity=0.094 Sum_probs=60.2
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~ 149 (647)
-+.+++.+ ++.|||.... .. ...+++|++.+.+.+.+... |..+.....+.. ++.+|+.--
T Consensus 74 p~gia~~~--dG~l~vad~~---~~----~~~v~~~d~~~g~~~~~~~~--~~~~~~~g~~~~~~~~~~v~d~------- 135 (306)
T 2p4o_A 74 VSGLAFTS--NGDLVATGWN---AD----SIPVVSLVKSDGTVETLLTL--PDAIFLNGITPLSDTQYLTADS------- 135 (306)
T ss_dssp EEEEEECT--TSCEEEEEEC---TT----SCEEEEEECTTSCEEEEEEC--TTCSCEEEEEESSSSEEEEEET-------
T ss_pred ceeEEEcC--CCcEEEEecc---CC----cceEEEEcCCCCeEEEEEeC--CCccccCcccccCCCcEEEEEC-------
Confidence 34455554 4567765431 00 01478899888887765432 334444444433 456777532
Q ss_pred ccccccCcEEEEECCCCc---EEEcccC--CCCCC--cceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCC
Q 006384 150 ERFHHYKDFWMLDLKTNQ---WEQLNLK--GCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~---W~~~~~~--~~P~~--R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t 218 (647)
....+|++|+.+.. |..-... ..+.. .....+..-++.||+.-- ..+.|++|++..
T Consensus 136 ----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~---------~~~~I~~~~~~~ 198 (306)
T 2p4o_A 136 ----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT---------EKMLLLRIPVDS 198 (306)
T ss_dssp ----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET---------TTTEEEEEEBCT
T ss_pred ----CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC---------CCCEEEEEEeCC
Confidence 12579999987642 2111100 01111 112223333567887542 236789999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 647 | ||||
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 2e-11 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 7e-10 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 5e-06 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 1e-06 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 7e-06 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 7e-05 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.4 bits (152), Expect = 2e-11
Identities = 41/285 (14%), Positives = 65/285 (22%), Gaps = 47/285 (16%)
Query: 94 GNKTYVYG--------DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145
G Y G L Y+ W + + PRS LY GG
Sbjct: 4 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL--ADLQVPRSGLAGCVVGGLLYAVGGRNN 61
Query: 146 SPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREV 205
SP+ D + PR+ + + I GG + +
Sbjct: 62 SPDGNTDSSALDCYNPMTNQWSPCA----PMSVPRNRIGVGVIDGHIYAVGGSHGCIHHN 117
Query: 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR------SGFQFFVYQDEVFLYGGYSKEVS 259
D + R G GF + Y E
Sbjct: 118 SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR 177
Query: 260 TDKNQSEKGIIHS------------------DLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301
+ L S++ E + R+
Sbjct: 178 MITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG 237
Query: 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPL 346
+ VH+ R + GG FL+ + + D W +
Sbjct: 238 ITVHQGRIYVLGGYDGHT---------FLDSVECYDPDTDTWSEV 273
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.4 bits (139), Expect = 7e-10
Identities = 32/214 (14%), Positives = 60/214 (28%), Gaps = 31/214 (14%)
Query: 91 FYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150
+ G E + + R LY GG +
Sbjct: 105 YAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG------FD 158
Query: 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYND 210
+ + N+W + +G + + I GG Y
Sbjct: 159 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGG---------YDGQ 207
Query: 211 LYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGII 270
+ ++++ + F + RS V+Q +++ GGY D
Sbjct: 208 DQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLD--------- 258
Query: 271 HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304
+ DP T WS+V ++ R+G + V
Sbjct: 259 --SVECYDPDTDTWSEVTRM---TSGRSGVGVAV 287
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (108), Expect = 5e-06
Identities = 39/315 (12%), Positives = 74/315 (23%), Gaps = 51/315 (16%)
Query: 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVF 249
I GG++ + + L ++ W + PRSG V ++
Sbjct: 5 RLIYTAGGYFR-----QSLSYLEAYNPSNGTWLRLAD-----LQVPRSGLAGCVVGGLLY 54
Query: 250 LYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRA 309
GG + + + S + ++ PR + V
Sbjct: 55 AVGGRNNSPDGNTDSSALDCYN----------PMTNQWSPCAPMSVPRNRIGVGVIDGHI 104
Query: 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369
GG V + +
Sbjct: 105 YAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRI---------------------GVG 143
Query: 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGG 429
FD + +AE Y I ++ + + +GG
Sbjct: 144 VAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGG 203
Query: 430 KPYESKKKS-----DMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDD 484
+ + S ++ R + V + +YV GG D LD
Sbjct: 204 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGY----DGHTFLDS 259
Query: 485 LYSLNLSKLDEWKCI 499
+ + D W +
Sbjct: 260 VECYDPDT-DTWSEV 273
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 48.7 bits (114), Expect = 1e-06
Identities = 18/163 (11%), Positives = 44/163 (26%), Gaps = 11/163 (6%)
Query: 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP 123
AP ++ + +K L G Y + + + + N
Sbjct: 227 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY 286
Query: 124 PRSAHQAVSWKNY--LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS 181
+I GG+ E + + + + + N R
Sbjct: 287 FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN--PNSIVRV 344
Query: 182 GHR--MVLYKHKIIVFGGF-----YDTLREVRYYNDLYVFDLD 217
H ++L ++ GG + + + Y+++ +
Sbjct: 345 YHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSN 387
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 46.3 bits (108), Expect = 7e-06
Identities = 20/181 (11%), Positives = 38/181 (20%), Gaps = 21/181 (11%)
Query: 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178
+ P +A + ++ D T +
Sbjct: 15 IDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH 74
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
+ + + IV G D ++ Y+ S P P
Sbjct: 75 DMFCPGISMDGNGQIVVTGGNDA-KKTSLYD----------------SSSDSWIPGPDMQ 117
Query: 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298
G V T G+ + P + W+ + + P A
Sbjct: 118 VARGYQSSATMSDG----RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA 173
Query: 299 G 299
Sbjct: 174 D 174
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 43.3 bits (100), Expect = 7e-05
Identities = 22/287 (7%), Positives = 56/287 (19%), Gaps = 29/287 (10%)
Query: 63 VPAPSPRSNCSLNINPLKETELILYGGEF--YNGNKTYVYGDLYRYDVEKQEWKVISSPN 120
+ P + ++ ++++ G +D +
Sbjct: 15 IDLPIVPAAAAI---EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV 71
Query: 121 SPPPR--SAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178
+ + G + K + D ++ W
Sbjct: 72 TKHDMFCPGISMDGNGQIVVTGG-----------NDAKKTSLYDSSSDSWIPGP--DMQV 118
Query: 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238
R + G + + V+ W + P
Sbjct: 119 ARGYQSSATMSDGRVFTIGGSW--SGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLTADK 175
Query: 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298
+ + +L+ + + G + W + + K G
Sbjct: 176 QGLYRSDNHAWLF------GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 229
Query: 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345
+ G ++ D S + L P
Sbjct: 230 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP 276
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 647 | |||
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.97 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.89 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.37 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 95.85 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 95.73 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 95.05 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 94.94 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.88 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 94.71 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 94.64 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 94.4 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 94.38 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 94.37 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 94.11 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 93.87 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 93.85 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 93.79 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 93.73 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 93.59 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 93.3 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 93.29 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 93.24 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 93.16 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 92.78 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 92.7 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 92.37 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 92.19 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 91.86 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 91.43 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 91.32 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 91.15 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 91.04 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 90.7 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 90.62 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.6 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 90.31 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 89.77 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 89.25 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 88.81 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 87.85 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 86.95 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 86.65 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 86.51 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 85.31 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 84.27 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 83.79 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 83.77 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 82.38 | |
| d1hxna_ | 210 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 81.49 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 81.02 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 80.22 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-39 Score=327.00 Aligned_cols=277 Identities=19% Similarity=0.280 Sum_probs=239.9
Q ss_pred cCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcE
Q 006384 79 LKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 79 ~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
..++.||||||. +.. .++++++||+.+++|+.+++ +|.+|.+|++++++++||||||....... ...++++
T Consensus 2 ~~g~~iyv~GG~--~~~---~~~~~~~yd~~t~~W~~~~~--~p~~R~~~~~~~~~~~iyv~GG~~~~~~~--~~~~~~~ 72 (288)
T d1zgka1 2 KVGRLIYTAGGY--FRQ---SLSYLEAYNPSNGTWLRLAD--LQVPRSGLAGCVVGGLLYAVGGRNNSPDG--NTDSSAL 72 (288)
T ss_dssp CCCCCEEEECCB--SSS---BCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCEEEETTE--EEECCCE
T ss_pred CcCCEEEEECCc--CCC---CCceEEEEECCCCeEEECCC--CCCccceeEEEEECCEEEEEeCcccCCCC--ccccchh
Confidence 347899999995 222 56899999999999999976 57899999999999999999997543322 3467899
Q ss_pred EEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCcee
Q 006384 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (647)
Q Consensus 159 ~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~ 238 (647)
|+||+.+++|+.+++ +|.+|.+|++++++++||++||.... ..+++++.||+.+..|...+.. |.+|.+
T Consensus 73 ~~yd~~~~~w~~~~~--~p~~r~~~~~~~~~~~i~~~gg~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~~~r~~ 141 (288)
T d1zgka1 73 DCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAVGGSHGC----IHHNSVERYEPERDEWHLVAPM-----LTRRIG 141 (288)
T ss_dssp EEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEECCEETT----EECCCEEEEETTTTEEEECCCC-----SSCCBS
T ss_pred hhccccccccccccc--ccceecceeccccceeeEEecceecc----cccceeeeeccccCcccccccc-----cccccc
Confidence 999999999999987 89999999999999999999998653 3689999999999999998777 889999
Q ss_pred eeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceecc
Q 006384 239 FQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDM 318 (647)
Q Consensus 239 ~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~ 318 (647)
|+++++.+.+|++||.... ....++++||+.+++|..... .+.++..+++++++++|+++||...
T Consensus 142 ~~~~~~~~~~~~~GG~~~~-----------~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~i~GG~~~- 206 (288)
T d1zgka1 142 VGVAVLNRLLYAVGGFDGT-----------NRLNSAECYYPERNEWRMITA---MNTIRSGAGVCVLHNCIYAAGGYDG- 206 (288)
T ss_dssp CEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBCS-
T ss_pred ceeeeeeecceEecCcccc-----------cccceEEEeeccccccccccc---cccccccccccceeeeEEEecCccc-
Confidence 9999999999999998655 556789999999999998865 4778899999999999999999765
Q ss_pred ccCccccccccCCcEEEEECCCCcEEEeEecCCCcchhhhccccccCCCchhhhhccCchhhhhcccCcccchhhhhhhh
Q 006384 319 EMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEA 398 (647)
Q Consensus 319 ~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 398 (647)
...+++++.||+.+++|..+..
T Consensus 207 --------~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 228 (288)
T d1zgka1 207 --------QDQLNSVERYDVETETWTFVAP-------------------------------------------------- 228 (288)
T ss_dssp --------SSBCCCEEEEETTTTEEEECCC--------------------------------------------------
T ss_pred --------cccccceeeeeecceeeecccC--------------------------------------------------
Confidence 3457899999999999998765
Q ss_pred hhcccccccccccCCcceeecCceeeeecCCCCCcccccccccccCCCCCcCCccccccceeeecCeEEEecceEeecCe
Q 006384 399 DEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQ 478 (647)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~Lyi~GG~~e~g~~ 478 (647)
+|.+|.+|++++.+++||||||...
T Consensus 229 ---------------------------------------------------~p~~r~~~~~~~~~~~l~v~GG~~~---- 253 (288)
T d1zgka1 229 ---------------------------------------------------MKHRRSALGITVHQGRIYVLGGYDG---- 253 (288)
T ss_dssp ---------------------------------------------------CSSCCBSCEEEEETTEEEEECCBCS----
T ss_pred ---------------------------------------------------ccCcccceEEEEECCEEEEEecCCC----
Confidence 5899999999999999999999742
Q ss_pred EEeecceeccccCCccceEEeccCCc
Q 006384 479 EITLDDLYSLNLSKLDEWKCIIPASE 504 (647)
Q Consensus 479 e~tl~D~~~ldl~~~d~w~~~~~~~~ 504 (647)
...++++|.||+.+ ++|++|-+.+.
T Consensus 254 ~~~~~~v~~yd~~~-~~W~~~~~~p~ 278 (288)
T d1zgka1 254 HTFLDSVECYDPDT-DTWSEVTRMTS 278 (288)
T ss_dssp SCBCCEEEEEETTT-TEEEEEEECSS
T ss_pred CeecceEEEEECCC-CEEEECCCCCC
Confidence 34689999999999 99999976643
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.1e-36 Score=303.55 Aligned_cols=243 Identities=19% Similarity=0.289 Sum_probs=214.6
Q ss_pred cCCCCCCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEE
Q 006384 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIF 140 (647)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~ 140 (647)
...++|.+|.+|+++++ +++||||||..........++++|+||+.+++|+.+++ +|.+|++|++++++++||++
T Consensus 33 ~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~--~p~~r~~~~~~~~~~~i~~~ 107 (288)
T d1zgka1 33 RLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP--MSVPRNRIGVGVIDGHIYAV 107 (288)
T ss_dssp ECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC--CSSCCBTCEEEEETTEEEEE
T ss_pred ECCCCCCccceeEEEEE---CCEEEEEeCcccCCCCccccchhhhccccccccccccc--ccceecceeccccceeeEEe
Confidence 44678999999999999 89999999975444445678999999999999999976 46899999999999999999
Q ss_pred eCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
||.... ..+++++.||+.++.|...+. +|.+|.+|+++++++++|++||..... .+++++.||+.+++
T Consensus 108 gg~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~~GG~~~~~----~~~~~~~~d~~~~~ 175 (288)
T d1zgka1 108 GGSHGC------IHHNSVERYEPERDEWHLVAP--MLTRRIGVGVAVLNRLLYAVGGFDGTN----RLNSAECYYPERNE 175 (288)
T ss_dssp CCEETT------EECCCEEEEETTTTEEEECCC--CSSCCBSCEEEEETTEEEEECCBCSSC----BCCCEEEEETTTTE
T ss_pred cceecc------cccceeeeeccccCccccccc--cccccccceeeeeeecceEecCccccc----ccceEEEeeccccc
Confidence 997654 356889999999999998877 688999999999999999999986532 47889999999999
Q ss_pred eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceee
Q 006384 221 WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF 300 (647)
Q Consensus 221 W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~ 300 (647)
|...... +.++.++++++.++.||++||.... ...+++++||+.+.+|+.+.+ .|.+|.+|
T Consensus 176 ~~~~~~~-----~~~~~~~~~~~~~~~i~i~GG~~~~-----------~~~~~~~~~~~~~~~~~~~~~---~p~~r~~~ 236 (288)
T d1zgka1 176 WRMITAM-----NTIRSGAGVCVLHNCIYAAGGYDGQ-----------DQLNSVERYDVETETWTFVAP---MKHRRSAL 236 (288)
T ss_dssp EEECCCC-----SSCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTEEEECCC---CSSCCBSC
T ss_pred ccccccc-----ccccccccccceeeeEEEecCcccc-----------ccccceeeeeecceeeecccC---ccCcccce
Confidence 9998776 7888999999999999999998765 567889999999999999965 48899999
Q ss_pred EEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 301 SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 301 s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
++++++++||||||.+. ..+++++|+||+.+++|+.+..
T Consensus 237 ~~~~~~~~l~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~ 275 (288)
T d1zgka1 237 GITVHQGRIYVLGGYDG---------HTFLDSVECYDPDTDTWSEVTR 275 (288)
T ss_dssp EEEEETTEEEEECCBCS---------SCBCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCEEEEEecCCC---------CeecceEEEEECCCCEEEECCC
Confidence 99999999999999865 4578999999999999999987
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.97 E-value=2.9e-30 Score=273.56 Aligned_cols=260 Identities=9% Similarity=0.026 Sum_probs=176.7
Q ss_pred CCCCCCCCcceEEEEeccCCCEEEEEcCeecCC--CcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEE
Q 006384 62 NVPAPSPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLY 138 (647)
Q Consensus 62 ~~~~P~~R~~~s~~~~~~~~~~lyv~GG~~~~g--~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iy 138 (647)
..+.|..|..++++.. +++||||||..... .....+..+++||+.+++|..++.+..|..+..++.+.. +++||
T Consensus 14 ~~~~p~~~~~~a~~~~---~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~ 90 (387)
T d1k3ia3 14 TIDLPIVPAAAAIEPT---SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIV 90 (387)
T ss_dssp EEECSSCCSEEEEETT---TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEE
T ss_pred cCCCCccccEEEEEee---CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEE
Confidence 3456666665555544 79999999963221 111234568899999999998776655555555555544 68899
Q ss_pred EEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcC
Q 006384 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (647)
Q Consensus 139 v~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~ 217 (647)
++||... +++++||+.+++|..++. +|.+|.+|+++++ +++||++||..... ..++++++||+.
T Consensus 91 v~Gg~~~----------~~~~~yd~~~~~w~~~~~--~~~~r~~~~~~~~~dG~v~v~GG~~~~~---~~~~~v~~yd~~ 155 (387)
T d1k3ia3 91 VTGGNDA----------KKTSLYDSSSDSWIPGPD--MQVARGYQSSATMSDGRVFTIGGSWSGG---VFEKNGEVYSPS 155 (387)
T ss_dssp EECSSST----------TCEEEEEGGGTEEEECCC--CSSCCSSCEEEECTTSCEEEECCCCCSS---SCCCCEEEEETT
T ss_pred EeecCCC----------cceeEecCccCccccccc--ccccccccceeeecCCceeeeccccccc---cccceeeeecCC
Confidence 9998642 578999999999999887 8999999999887 67999999975533 367899999999
Q ss_pred CCceEEeccCCCCC----------------------------------------------------------CCCCceee
Q 006384 218 QFKWQEIKPRFGSM----------------------------------------------------------WPSPRSGF 239 (647)
Q Consensus 218 t~~W~~v~~~~~~~----------------------------------------------------------~P~~R~~~ 239 (647)
+++|+.++...... .+.++.++
T Consensus 156 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (387)
T d1k3ia3 156 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 235 (387)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCccccccc
Confidence 99999886542100 01112222
Q ss_pred eEEE--eCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEeccee
Q 006384 240 QFFV--YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVV 316 (647)
Q Consensus 240 s~~~--~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~ 316 (647)
++.. .+++|||+||..... ...........+++.+++....|+.+.. +|.+|.+|+++++ +++|||+||..
T Consensus 236 ~~~~~~~~g~v~v~GG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~r~~~~~~~~~dg~i~v~GG~~ 309 (387)
T d1k3ia3 236 AVMYDAVKGKILTFGGSPDYQ---DSDATTNAHIITLGEPGTSPNTVFASNG---LYFARTFHTSVVLPDGSTFITGGQR 309 (387)
T ss_dssp EEEEETTTTEEEEECCBSSSS---SSBCCCCEEEEECCSTTSCCEEEECTTC---CSSCCBSCEEEECTTSCEEEECCBS
T ss_pred EEEeeccCCceEEEEeccCCC---CCcccceeecccccccccCCCceeeccc---cccccccceeeeccCCeEEEECCcc
Confidence 2222 268899999975430 0001111122223333455667776654 4889999999888 67999999976
Q ss_pred ccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 317 DMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 317 ~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
...... .....+.+++||+.+++|+.++.
T Consensus 310 ~~~~~~---~~~~~~~ve~Ydp~~~~W~~~~~ 338 (387)
T d1k3ia3 310 RGIPFE---DSTPVFTPEIYVPEQDTFYKQNP 338 (387)
T ss_dssp BCCTTC---CCSBCCCCEEEEGGGTEEEECCC
T ss_pred cCccCC---CCcEeceEEEEECCCCeEEECCC
Confidence 432211 13445679999999999998865
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.89 E-value=1.7e-23 Score=221.01 Aligned_cols=203 Identities=12% Similarity=0.034 Sum_probs=146.7
Q ss_pred CCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE
Q 006384 108 VEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL 187 (647)
Q Consensus 108 ~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~ 187 (647)
|..++|...++ .|..|.+++++..+++||||||............+..+++||+.+++|..++....|..+..+++++
T Consensus 6 p~~g~W~~~~~--~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~ 83 (387)
T d1k3ia3 6 PGLGRWGPTID--LPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISM 83 (387)
T ss_dssp TTSCEEEEEEE--CSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEE
T ss_pred CCCCccCCcCC--CCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEE
Confidence 56789998765 4566766666666899999999764433222234556899999999999877632344444444444
Q ss_pred -ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCC
Q 006384 188 -YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQS 265 (647)
Q Consensus 188 -~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~ 265 (647)
.+++||++||.. .+++++||+.+++|+.++.+ |.+|.+|+++++ +++|||+||....
T Consensus 84 ~~~g~i~v~Gg~~--------~~~~~~yd~~~~~w~~~~~~-----~~~r~~~~~~~~~dG~v~v~GG~~~~-------- 142 (387)
T d1k3ia3 84 DGNGQIVVTGGND--------AKKTSLYDSSSDSWIPGPDM-----QVARGYQSSATMSDGRVFTIGGSWSG-------- 142 (387)
T ss_dssp CTTSCEEEECSSS--------TTCEEEEEGGGTEEEECCCC-----SSCCSSCEEEECTTSCEEEECCCCCS--------
T ss_pred ecCCcEEEeecCC--------CcceeEecCccCcccccccc-----cccccccceeeecCCceeeecccccc--------
Confidence 378999999864 36789999999999998887 889999999888 7799999997654
Q ss_pred CCCceeeeEEEEeCCCCeEEEeecCCCCCCCceee-----------EEEEECCeEEEecceeccccCccccccccCCcEE
Q 006384 266 EKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF-----------SMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 266 ~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~-----------s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
+...+++++||+.+++|+.+......+.....+ .+...++++|++||. ...++
T Consensus 143 --~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~--------------~~~~~ 206 (387)
T d1k3ia3 143 --GVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS--------------TAMNW 206 (387)
T ss_dssp --SSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS--------------SEEEE
T ss_pred --ccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc--------------CCcEE
Confidence 467789999999999999987643222211111 111124566666653 45789
Q ss_pred EEECCCCcEEEeEec
Q 006384 335 GFQLDNHRWYPLELR 349 (647)
Q Consensus 335 ~yd~~t~~W~~l~~~ 349 (647)
.|++.+..|..+...
T Consensus 207 ~~~~~~~~~~~~~~~ 221 (387)
T d1k3ia3 207 YYTSGSGDVKSAGKR 221 (387)
T ss_dssp EECSTTCEEEEEEEC
T ss_pred ecCcccCcEeecccc
Confidence 999999999988764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.37 E-value=0.47 Score=45.42 Aligned_cols=103 Identities=11% Similarity=-0.020 Sum_probs=57.5
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC--CC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC--PS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~--P~ 178 (647)
+.+++||+.+++-+....+. +.+..+..-++.|+|... +.+++||+.+++++.+..... +.
T Consensus 40 ~~I~r~d~~~g~~~~~~~~~----~~~~i~~~~dg~l~va~~-------------~gl~~~d~~tg~~~~l~~~~~~~~~ 102 (295)
T d2ghsa1 40 RELHELHLASGRKTVHALPF----MGSALAKISDSKQLIASD-------------DGLFLRDTATGVLTLHAELESDLPG 102 (295)
T ss_dssp TEEEEEETTTTEEEEEECSS----CEEEEEEEETTEEEEEET-------------TEEEEEETTTCCEEEEECSSTTCTT
T ss_pred CEEEEEECCCCeEEEEECCC----CcEEEEEecCCCEEEEEe-------------CccEEeecccceeeEEeeeecCCCc
Confidence 47999999998766554321 122222233677777532 458899999999988765221 33
Q ss_pred CcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEec
Q 006384 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (647)
Q Consensus 179 ~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~ 225 (647)
.|.....+--++.||+---.... ......+|.+..++.+.+.
T Consensus 103 ~~~nd~~vd~~G~iw~~~~~~~~-----~~~~g~l~~~~~g~~~~~~ 144 (295)
T d2ghsa1 103 NRSNDGRMHPSGALWIGTMGRKA-----ETGAGSIYHVAKGKVTKLF 144 (295)
T ss_dssp EEEEEEEECTTSCEEEEEEETTC-----CTTCEEEEEEETTEEEEEE
T ss_pred ccceeeEECCCCCEEEEeccccc-----cccceeEeeecCCcEEEEe
Confidence 34444444447788775332211 1223344444455555543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.85 E-value=0.1 Score=51.46 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=75.9
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccc
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~ 152 (647)
+++.| ++.++++|+. + +.+..||..++++..+..... ....-.+++.. ++.+++.||..
T Consensus 13 ~~~s~--dg~~la~~~~--~-------~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~~l~s~s~D-------- 72 (371)
T d1k8kc_ 13 HAWNK--DRTQIAICPN--N-------HEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTD-------- 72 (371)
T ss_dssp EEECT--TSSEEEEECS--S-------SEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETT--------
T ss_pred EEECC--CCCEEEEEeC--C-------CEEEEEECCCCCEEEEEEecC-CCCCEEEEEECCCCCEEEEEECC--------
Confidence 34445 6777778873 2 368889998888876643210 01111222222 45556666642
Q ss_pred cccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCC
Q 006384 153 HHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (647)
..+.+||+.++.|..... .........++.+ +++.++.|+... .-.+|.++.....|......
T Consensus 73 ---~~i~vWd~~~~~~~~~~~--~~~~~~~v~~i~~~p~~~~l~~~s~d~-------~i~i~~~~~~~~~~~~~~~~--- 137 (371)
T d1k8kc_ 73 ---RNAYVWTLKGRTWKPTLV--ILRINRAARCVRWAPNEKKFAVGSGSR-------VISICYFEQENDWWVCKHIK--- 137 (371)
T ss_dssp ---SCEEEEEEETTEEEEEEE--CCCCSSCEEEEEECTTSSEEEEEETTS-------SEEEEEEETTTTEEEEEEEC---
T ss_pred ---CeEEEEeecccccccccc--cccccccccccccccccccceeecccC-------cceeeeeecccccccccccc---
Confidence 357888888898887654 2222222223333 455566665432 12355556555555544333
Q ss_pred CCCCCcee-eeEEEe-CCEEEEEecccCC
Q 006384 231 MWPSPRSG-FQFFVY-QDEVFLYGGYSKE 257 (647)
Q Consensus 231 ~~P~~R~~-~s~~~~-~~~Iyv~GG~~~~ 257 (647)
...+.. .++... ++.+++.|+.++.
T Consensus 138 --~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 138 --KPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp --TTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred --cccccccccccccccccceeccccCcE
Confidence 111111 222223 5667777776654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.18 Score=48.60 Aligned_cols=192 Identities=14% Similarity=0.071 Sum_probs=94.0
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCcc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~ 151 (647)
++++.| ++.+++.|+. + +.+.+||+.....+.........+. -..++.. ++.+++.|+..
T Consensus 102 ~v~~s~--dg~~l~s~~~--d-------g~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d------- 162 (337)
T d1gxra_ 102 SCKLLP--DGCTLIVGGE--A-------STLSIWDLAAPTPRIKAELTSSAPA-CYALAISPDSKVCFSCCSD------- 162 (337)
T ss_dssp EEEECT--TSSEEEEEES--S-------SEEEEEECCCC--EEEEEEECSSSC-EEEEEECTTSSEEEEEETT-------
T ss_pred EEEEcC--CCCEEEEeec--c-------ccccccccccccccccccccccccc-ccccccccccccccccccc-------
Confidence 445555 5566677763 2 3678888877665533321111111 1122222 44555555532
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCC
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~ 230 (647)
..+..|++.+.+-..... ...... .+++. .++..+++|+.. ..+.+||+.+.+-......
T Consensus 163 ----~~i~~~~~~~~~~~~~~~--~~~~~v-~~l~~s~~~~~~~~~~~d---------~~v~i~d~~~~~~~~~~~~--- 223 (337)
T d1gxra_ 163 ----GNIAVWDLHNQTLVRQFQ--GHTDGA-SCIDISNDGTKLWTGGLD---------NTVRSWDLREGRQLQQHDF--- 223 (337)
T ss_dssp ----SCEEEEETTTTEEEEEEC--CCSSCE-EEEEECTTSSEEEEEETT---------SEEEEEETTTTEEEEEEEC---
T ss_pred ----cccccccccccccccccc--cccccc-cccccccccccccccccc---------ccccccccccceeeccccc---
Confidence 357888988776433322 111111 12222 255666667642 4578888877643222111
Q ss_pred CCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCe
Q 006384 231 MWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKR 308 (647)
Q Consensus 231 ~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~ 308 (647)
+. .-.+++.. ++.+++.|+.++. +.+||+.+..-..... ... .-.++++. ++.
T Consensus 224 --~~--~i~~l~~~~~~~~l~~~~~d~~----------------i~i~d~~~~~~~~~~~----~~~-~i~~v~~s~~g~ 278 (337)
T d1gxra_ 224 --TS--QIFSLGYCPTGEWLAVGMESSN----------------VEVLHVNKPDKYQLHL----HES-CVLSLKFAYCGK 278 (337)
T ss_dssp --SS--CEEEEEECTTSSEEEEEETTSC----------------EEEEETTSSCEEEECC----CSS-CEEEEEECTTSS
T ss_pred --cc--ceEEEEEcccccccceeccccc----------------cccccccccccccccc----ccc-ccceEEECCCCC
Confidence 11 11223333 5566677776554 7788877655433221 111 11223332 566
Q ss_pred EEEecceeccccCccccccccCCcEEEEECCCC
Q 006384 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (647)
Q Consensus 309 iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~ 341 (647)
.++.|+.+ +.|.+||+.+.
T Consensus 279 ~l~s~s~D--------------g~i~iwd~~~~ 297 (337)
T d1gxra_ 279 WFVSTGKD--------------NLLNAWRTPYG 297 (337)
T ss_dssp EEEEEETT--------------SEEEEEETTTC
T ss_pred EEEEEeCC--------------CeEEEEECCCC
Confidence 67766642 34888887764
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.38 Score=43.22 Aligned_cols=151 Identities=14% Similarity=0.217 Sum_probs=81.9
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcc--c--CCCCCCcceeEEEEE--CCEEEEEecccCCC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN--L--KGCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~--~--~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~ 202 (647)
+++.+++.+|+|-| .-+|+++.....+.... . .++|.. .. ++... ++++|+|-|.
T Consensus 13 Av~~~~g~~y~Fkg-------------~~~wr~~~~~~~~~p~~i~~~w~~lp~~-ID-AAf~~~~~~~~yffkg~---- 73 (192)
T d1pexa_ 13 AITSLRGETMIFKD-------------RFFWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDLIFIFRGR---- 73 (192)
T ss_dssp EEEEETTEEEEEET-------------TEEEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTEEEEEETT----
T ss_pred EEEEcCCeEEEEEC-------------CEEEEEcCCCCCCcccchhhhCcCCCCc-cc-ceEEEcCCCEEEEEcCC----
Confidence 66777999999987 34677776554444222 1 123432 22 23333 6889998873
Q ss_pred CceeeeCcEEEEEcCCCceE---EeccCCCCCCCCCceee-eEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEE
Q 006384 203 REVRYYNDLYVFDLDQFKWQ---EIKPRFGSMWPSPRSGF-QFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (647)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~W~---~v~~~~~~~~P~~R~~~-s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (647)
.+|+|+..+.... .+... .+|.+-..- +++.. ++++|+|-|. ..|+
T Consensus 74 -------~~w~y~~~~~~~gyPk~i~~~---~~~~~~~~idaA~~~~~~~~~y~Fkg~------------------~y~~ 125 (192)
T d1pexa_ 74 -------KFWALNGYDILEGYPKKISEL---GLPKEVKKISAAVHFEDTGKTLLFSGN------------------QVWR 125 (192)
T ss_dssp -------EEEEESTTCCCTTCSEESTTT---TCCTTCCCCCEEEECTTTSEEEEEETT------------------EEEE
T ss_pred -------EEEEEcCCcccCCCCeEeeee---ecCCCCCCccEEEEECCCCEEEEEeCC------------------EEEE
Confidence 4688875443331 22221 112221122 22332 6899999763 2688
Q ss_pred EeCCCCeEEE-----eec-CCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEE
Q 006384 277 LDPRTWEWSK-----VKK-IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 277 yd~~t~~W~~-----v~~-~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
||.....-.. +.. -+..|. +.- ++...++.+|+|-| +..|+||..+++=.
T Consensus 126 y~~~~~~~~~~~pk~I~~~w~gvp~-~vd-Aa~~~~g~~YfF~g----------------~~y~r~~~~~~~v~ 181 (192)
T d1pexa_ 126 YDDTNHIMDKDYPRLIEEDFPGIGD-KVD-AVYEKNGYIYFFNG----------------PIQFEYSIWSNRIV 181 (192)
T ss_dssp EETTTTEECSSCCCBHHHHSTTSCS-CCS-EEEEETTEEEEEET----------------TEEEEEETTTTEEE
T ss_pred EcCccccccCCCcEEHhhcCCCCCC-Cce-EEEEeCCEEEEEEC----------------CEEEEEeCCcCeEc
Confidence 8876654221 110 011121 222 33356899999977 34889998776543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.94 E-value=0.33 Score=46.48 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=55.8
Q ss_pred CEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCC
Q 006384 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKG 268 (647)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~ 268 (647)
..+++.|+.. ..+.+||..+.+-...-.. ....-.++... ++.+++.|+.++.
T Consensus 159 ~~~l~sgs~d---------~~i~i~d~~~~~~~~~~~~------~~~~i~~v~~~p~~~~l~~~~~d~~----------- 212 (311)
T d1nr0a1 159 PFRIISGSDD---------NTVAIFEGPPFKFKSTFGE------HTKFVHSVRYNPDGSLFASTGGDGT----------- 212 (311)
T ss_dssp SCEEEEEETT---------SCEEEEETTTBEEEEEECC------CSSCEEEEEECTTSSEEEEEETTSC-----------
T ss_pred eeeecccccc---------ccccccccccccccccccc------ccccccccccCcccccccccccccc-----------
Confidence 3456667643 3578889887654333221 11112233333 5667777776654
Q ss_pred ceeeeEEEEeCCCCeEEEeecCCCCCCCcee----e-EEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG----F-SMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~----~-s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+.+||+.+..-...-.. ......+ . ++++. ++..++.||.+ +.|.+||+.+++
T Consensus 213 -----v~~~d~~~~~~~~~~~~--~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D--------------g~v~iwd~~t~~ 271 (311)
T d1nr0a1 213 -----IVLYNGVDGTKTGVFED--DSLKNVAHSGSVFGLTWSPDGTKIASASAD--------------KTIKIWNVATLK 271 (311)
T ss_dssp -----EEEEETTTCCEEEECBC--TTSSSCSSSSCEEEEEECTTSSEEEEEETT--------------SEEEEEETTTTE
T ss_pred -----ccccccccccccccccc--cccccccccccccccccCCCCCEEEEEeCC--------------CeEEEEECCCCc
Confidence 77888776543332111 1111111 2 23332 56777777642 358999998775
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=94.88 E-value=2.2 Score=44.58 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=69.6
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCC------CCCCcceeEEEEECCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN------SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~------~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~ 152 (647)
++.|||... .+.|+.+|..+. .|+.-+... ..........+..+++||+...
T Consensus 66 ~g~vyv~t~----------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------- 125 (560)
T d1kv9a2 66 DGVIYTSMS----------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---------- 125 (560)
T ss_dssp TTEEEEEEG----------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC----------
Confidence 799998765 257899999987 588532211 0011122344556788777643
Q ss_pred cccCcEEEEECCCCc--EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEecc
Q 006384 153 HHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~ 226 (647)
-..++.+|..+.+ |........+........+++++.+|+-+..... .....|..||..|.+ |+.-..
T Consensus 126 --~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~----~~~G~v~a~D~~TG~~~W~~~t~ 197 (560)
T d1kv9a2 126 --DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY----GVRGFVSAYDADTGKLAWRFYTV 197 (560)
T ss_dssp --TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT----CCBCEEEEEETTTCCEEEEEESS
T ss_pred --CCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceec----cccceEEEEECCCceEEeeeeec
Confidence 1468899988874 7654331111222233446678887764332221 123578999999865 776543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.71 E-value=0.35 Score=46.05 Aligned_cols=156 Identities=16% Similarity=0.131 Sum_probs=86.5
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv 158 (647)
+++++.+++. ..+|+||...+...+++. ..+. ..+.+ +++.++++|.... ..+
T Consensus 14 dG~~~a~~~~----------g~v~v~d~~~~~~~~~~~----~~~v--~~~~~spDg~~l~~~~~~~g---------~~v 68 (360)
T d1k32a3 14 DGDLIAFVSR----------GQAFIQDVSGTYVLKVPE----PLRI--RYVRRGGDTKVAFIHGTREG---------DFL 68 (360)
T ss_dssp GGGCEEEEET----------TEEEEECTTSSBEEECSC----CSCE--EEEEECSSSEEEEEEEETTE---------EEE
T ss_pred CCCEEEEEEC----------CeEEEEECCCCcEEEccC----CCCE--EEEEECCCCCEEEEEEcCCC---------CEE
Confidence 4566666552 378999999988887742 2232 23444 5666666553221 358
Q ss_pred EEEECCCCcEEEcccCCCCCCcceeEEEE-ECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCce
Q 006384 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (647)
Q Consensus 159 ~~yD~~t~~W~~~~~~~~P~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~ 237 (647)
++||..+.....+.. ..... ..++. -+++.+++++. -..++.++..+.+...+... .. ..
T Consensus 69 ~v~d~~~~~~~~~~~---~~~~v-~~~~~spdg~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~-----~~-~~ 129 (360)
T d1k32a3 69 GIYDYRTGKAEKFEE---NLGNV-FAMGVDRNGKFAVVAND---------RFEIMTVDLETGKPTVIERS-----RE-AM 129 (360)
T ss_dssp EEEETTTCCEEECCC---CCCSE-EEEEECTTSSEEEEEET---------TSEEEEEETTTCCEEEEEEC-----SS-SC
T ss_pred EEEECCCCcEEEeeC---CCceE-Eeeeecccccccceecc---------ccccccccccccceeeeeec-----cc-cc
Confidence 899999988776643 11222 22222 25566666654 24688899988776655433 11 11
Q ss_pred eeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE
Q 006384 238 GFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (647)
Q Consensus 238 ~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (647)
...++.. +++.+++++.... ....+.....++++++.+..=..
T Consensus 130 ~~~~~~spdg~~la~~~~~~~------~~~~~~~~~~~~v~d~~~~~~~~ 173 (360)
T d1k32a3 130 ITDFTISDNSRFIAYGFPLKH------GETDGYVMQAIHVYDMEGRKIFA 173 (360)
T ss_dssp CCCEEECTTSCEEEEEEEECS------STTCSCCEEEEEEEETTTTEEEE
T ss_pred ccchhhccceeeeeeeccccc------cceeeccccceeeeccccCceee
Confidence 1222222 5666666554332 11122334567888988765433
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.58 Score=41.91 Aligned_cols=153 Identities=14% Similarity=0.284 Sum_probs=81.9
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEec----CCCCCCCcceeEEEEE--CCEEEEEeCCcCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS----SPNSPPPRSAHQAVSW--KNYLYIFGGEFTS 146 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~----s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~ 146 (647)
+++.+ ++.+|+|=|. .+|+++.....+.... -+.+|.. --++... ++.+|+|-|
T Consensus 13 Av~~~---~g~~y~Fkg~-----------~~wr~~~~~~~~~p~~i~~~w~~lp~~--IDAAf~~~~~~~~yffkg---- 72 (192)
T d1pexa_ 13 AITSL---RGETMIFKDR-----------FFWRLHPQQVDAELFLTKSFWPELPNR--IDAAYEHPSHDLIFIFRG---- 72 (192)
T ss_dssp EEEEE---TTEEEEEETT-----------EEEEECSSSSCCEEEEHHHHCTTSCSS--CCEEEEETTTTEEEEEET----
T ss_pred EEEEc---CCeEEEEECC-----------EEEEEcCCCCCCcccchhhhCcCCCCc--ccceEEEcCCCEEEEEcC----
Confidence 34555 6899999884 4566665544443211 1122321 2233333 688999987
Q ss_pred CCCccccccCcEEEEECCCCcE---EEcccCCCCCCccee-EEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 147 PNQERFHHYKDFWMLDLKTNQW---EQLNLKGCPSPRSGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W---~~~~~~~~P~~R~~h-~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
+.+|+|+..+... ..+...+.|.+-..- +++.+ ++++|+|-| +..|.||..+..
T Consensus 73 ---------~~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg-----------~~y~~y~~~~~~ 132 (192)
T d1pexa_ 73 ---------RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-----------NQVWRYDDTNHI 132 (192)
T ss_dssp ---------TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-----------TEEEEEETTTTE
T ss_pred ---------CEEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeC-----------CEEEEEcCcccc
Confidence 4678887554333 233332223322222 33333 589999977 346888876543
Q ss_pred e-----EEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEE
Q 006384 221 W-----QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (647)
Q Consensus 221 W-----~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (647)
- ..|.....+ +|. +. .++...++.+|+|-|. ..|+||..+.+-..
T Consensus 133 ~~~~~pk~I~~~w~g-vp~-~v-dAa~~~~g~~YfF~g~------------------~y~r~~~~~~~v~~ 182 (192)
T d1pexa_ 133 MDKDYPRLIEEDFPG-IGD-KV-DAVYEKNGYIYFFNGP------------------IQFEYSIWSNRIVR 182 (192)
T ss_dssp ECSSCCCBHHHHSTT-SCS-CC-SEEEEETTEEEEEETT------------------EEEEEETTTTEEEE
T ss_pred ccCCCcEEHhhcCCC-CCC-Cc-eEEEEeCCEEEEEECC------------------EEEEEeCCcCeEcc
Confidence 1 111111111 121 22 2333459999999764 37788887766443
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.40 E-value=1.3 Score=43.00 Aligned_cols=115 Identities=14% Similarity=0.235 Sum_probs=58.8
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
.++.+.| ++.+++.||. + ..+.+||+.++.|....... ........+.+ ++..++.|+...
T Consensus 55 ~~l~fsp--~~~~l~s~s~--D-------~~i~vWd~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~l~~~s~d~---- 117 (371)
T d1k8kc_ 55 TGVDWAP--DSNRIVTCGT--D-------RNAYVWTLKGRTWKPTLVIL--RINRAARCVRWAPNEKKFAVGSGSR---- 117 (371)
T ss_dssp EEEEEET--TTTEEEEEET--T-------SCEEEEEEETTEEEEEEECC--CCSSCEEEEEECTTSSEEEEEETTS----
T ss_pred EEEEECC--CCCEEEEEEC--C-------CeEEEEeecccccccccccc--cccccccccccccccccceeecccC----
Confidence 3445556 4556666662 2 25788899999988654321 22222233333 455555555322
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
.-.+|.++.....|...... ...+..-.++.+ ++++++.|+.++ .+.+||+...
T Consensus 118 -----~i~i~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~~l~s~s~D~---------~v~v~~~~~~ 173 (371)
T d1k8kc_ 118 -----VISICYFEQENDWWVCKHIK--KPIRSTVLSLDWHPNSVLLAAGSCDF---------KCRIFSAYIK 173 (371)
T ss_dssp -----SEEEEEEETTTTEEEEEEEC--TTCCSCEEEEEECTTSSEEEEEETTS---------CEEEEECCCT
T ss_pred -----cceeeeeecccccccccccc--cccccccccccccccccceeccccCc---------EEEEEeeccC
Confidence 12466677666655544331 112222222333 456677777532 4566666543
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.65 Score=41.75 Aligned_cols=156 Identities=15% Similarity=0.217 Sum_probs=81.6
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE--EecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK--VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~--~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~ 148 (647)
+++.+ ++.||+|-|. .+|+++....... .+...-...|..--++... ++++|+|-|
T Consensus 16 Av~~~---~G~~y~Fkg~-----------~~wr~~~~~~~~~p~~i~~~w~glp~~IDAAf~~~~~~~~yfFkG------ 75 (195)
T d1su3a2 16 AITTI---RGEVMFFKDR-----------FYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKG------ 75 (195)
T ss_dssp EEEEE---TTEEEEEETT-----------EEEECCTTSSSCEEEEGGGTCTTSCSSCCEEEEEGGGTEEEEEET------
T ss_pred EEEEc---CCeEEEEeCC-----------EEEEeeCCCCccCccchHhhCcCCCCcccceEEecCCcEEEEECC------
Confidence 44555 6899999884 3455554444332 1111100112222344434 589999988
Q ss_pred CccccccCcEEEEECCCCc---EEEcc-cCCCCCCccee-EEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCce
Q 006384 149 QERFHHYKDFWMLDLKTNQ---WEQLN-LKGCPSPRSGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~---W~~~~-~~~~P~~R~~h-~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W 221 (647)
+.+|+|+..+.. -..+. ..|+|.....- ++..+ ++++|+|-| +..|+||..+.+-
T Consensus 76 -------~~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG-----------~~y~ry~~~~~~v 137 (195)
T d1su3a2 76 -------NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-----------NKYWRYDEYKRSM 137 (195)
T ss_dssp -------TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEEEETTTTEE
T ss_pred -------cEEEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeC-----------CEEEEEeccCccc
Confidence 568888743221 11221 11233322222 23333 579999988 3568898876531
Q ss_pred -----EEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEe
Q 006384 222 -----QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (647)
Q Consensus 222 -----~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v 287 (647)
..|.....+ +|. ... ++...++.+|+|-|. ..|+||..+.+-..+
T Consensus 138 d~gyPk~I~~~w~G-vp~-~iD-AAf~~~g~~YfFkg~------------------~y~r~~~~~~~v~~~ 187 (195)
T d1su3a2 138 DPGYPKMIAHDFPG-IGH-KVD-AVFMKDGFFYFFHGT------------------RQYKFDPKTKRILTL 187 (195)
T ss_dssp CSSCSEEHHHHSTT-SCS-CCS-EEEEETTEEEEEETT------------------EEEEEETTTTEEEEE
T ss_pred cCCcccccccccCC-CCC-Ccc-EEEEECCeEEEEECC------------------EEEEEeCCcCEEEec
Confidence 112111111 122 222 334558999999874 277888877665444
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.37 E-value=1.4 Score=41.62 Aligned_cols=177 Identities=10% Similarity=-0.053 Sum_probs=84.6
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCC
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~ 179 (647)
.++.||+.+..=..+-.. ....-.++.+ ++.+++.|+.. ..+.+||+.+..............
T Consensus 39 ~v~i~~~~~~~~~~~~~~----H~~~v~~~~~sp~g~~latg~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~ 103 (311)
T d1nr0a1 39 SVYTVPVGSLTDTEIYTE----HSHQTTVAKTSPSGYYCASGDVH-----------GNVRIWDTTQTTHILKTTIPVFSG 103 (311)
T ss_dssp EEEEEETTCSSCCEEECC----CSSCEEEEEECTTSSEEEEEETT-----------SEEEEEESSSTTCCEEEEEECSSS
T ss_pred EEEEEECCCCceeEEEcC----CCCCEEEEEEeCCCCeEeccccC-----------ceEeeeeeeccccccccccccccC
Confidence 578888876533222111 1122333444 56677777753 357888888776432211001111
Q ss_pred cceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEeccc
Q 006384 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYS 255 (647)
Q Consensus 180 R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~ 255 (647)
.. .++.+ ++++++.+|... ...+.+++..+.+-.. ... .....-.+++.. +..+++.|+.+
T Consensus 104 ~v--~~v~~s~d~~~l~~~~~~~-------~~~~~v~~~~~~~~~~--~l~----~h~~~v~~v~~~~~~~~~l~sgs~d 168 (311)
T d1nr0a1 104 PV--KDISWDSESKRIAAVGEGR-------ERFGHVFLFDTGTSNG--NLT----GQARAMNSVDFKPSRPFRIISGSDD 168 (311)
T ss_dssp CE--EEEEECTTSCEEEEEECCS-------SCSEEEEETTTCCBCB--CCC----CCSSCEEEEEECSSSSCEEEEEETT
T ss_pred cc--ccccccccccccccccccc-------cccccccccccccccc--ccc----ccccccccccccccceeeecccccc
Confidence 11 22223 456666666322 1235566666543211 110 000111222222 33466777765
Q ss_pred CCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEE
Q 006384 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (647)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~ 334 (647)
+. +.+||..+..-...... ....-.+++.. ++.+++.|+.. +.+.
T Consensus 169 ~~----------------i~i~d~~~~~~~~~~~~----~~~~i~~v~~~p~~~~l~~~~~d--------------~~v~ 214 (311)
T d1nr0a1 169 NT----------------VAIFEGPPFKFKSTFGE----HTKFVHSVRYNPDGSLFASTGGD--------------GTIV 214 (311)
T ss_dssp SC----------------EEEEETTTBEEEEEECC----CSSCEEEEEECTTSSEEEEEETT--------------SCEE
T ss_pred cc----------------ccccccccccccccccc----ccccccccccCcccccccccccc--------------cccc
Confidence 54 77888887654443221 11112223332 56677776642 4588
Q ss_pred EEECCCCc
Q 006384 335 GFQLDNHR 342 (647)
Q Consensus 335 ~yd~~t~~ 342 (647)
+||+.+..
T Consensus 215 ~~d~~~~~ 222 (311)
T d1nr0a1 215 LYNGVDGT 222 (311)
T ss_dssp EEETTTCC
T ss_pred cccccccc
Confidence 89987654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.11 E-value=2.2 Score=39.40 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=35.7
Q ss_pred ceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEE
Q 006384 269 IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 269 ~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
.....+..++..+..+...... |.....+.++...+..+++++. +.+.+||+.+.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---------------~~i~v~d~~~~~~~ 273 (337)
T d1pbyb_ 216 AYRTGLLTMDLETGEMAMREVR---IMDVFYFSTAVNPAKTRAFGAY---------------NVLESFDLEKNASI 273 (337)
T ss_dssp GEEEEEEEEETTTCCEEEEEEE---ECSSCEEEEEECTTSSEEEEEE---------------SEEEEEETTTTEEE
T ss_pred ccCccEEEEEcCCCcEEEEEec---CCCcceEEEEecccceEEEEcc---------------ccEEEEECCCCcEE
Confidence 3455688888888877665443 3444455555555555555542 45888998876543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.87 E-value=1 Score=43.32 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=59.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~ 150 (647)
+++..| ++.+++.|+. + +.+..+|..+.+........ ......+.+ .+..++.|+.
T Consensus 126 ~l~~s~--~~~~l~s~~~--d-------g~v~i~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~------- 183 (388)
T d1erja_ 126 SVCFSP--DGKFLATGAE--D-------RLIRIWDIENRKIVMILQGH----EQDIYSLDYFPSGDKLVSGSG------- 183 (388)
T ss_dssp EEEECT--TSSEEEEEET--T-------SCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEEET-------
T ss_pred EEEECC--CCCcceeccc--c-------cccccccccccccccccccc----ccccccccccccccccccccc-------
Confidence 344555 5677777773 2 35788898888766543321 111112222 3445555542
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEE
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~ 223 (647)
...+..+|..+..-..... .. .....++.. ++.+++.|+.. ..+.+||..+.....
T Consensus 184 ----~~~i~~~d~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~~~d---------~~i~i~~~~~~~~~~ 241 (388)
T d1erja_ 184 ----DRTVRIWDLRTGQCSLTLS--IE--DGVTTVAVSPGDGKYIAAGSLD---------RAVRVWDSETGFLVE 241 (388)
T ss_dssp ----TSEEEEEETTTTEEEEEEE--CS--SCEEEEEECSTTCCEEEEEETT---------SCEEEEETTTCCEEE
T ss_pred ----ceeeeeeeccccccccccc--cc--cccccccccCCCCCeEEEEcCC---------CeEEEeecccCccce
Confidence 2457788887765444332 11 111222222 45677777643 357888888776543
|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.85 E-value=0.41 Score=43.02 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=58.2
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeE---EEecCCCCCCCcceeEEEEE------CCEEEEEeCCcCCCCCcc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW---KVISSPNSPPPRSAHQAVSW------KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W---~~l~s~~~P~~R~~ha~v~~------~~~iyv~GG~~~~~~~~~ 151 (647)
++++|+|-| +.+|+|+-.+... +.|...-.-.|..-.++... ++++|+|-|
T Consensus 59 ~~~~yfFkG-----------~~yw~y~~~~~~~gyPk~i~~~~~glp~~iDAA~~~~~~~~~~~~~yfFkg--------- 118 (192)
T d1qhua1 59 HTSVYLIKG-----------DKVWVYTSEKNEKVYPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQG--------- 118 (192)
T ss_dssp TTEEEEEET-----------TEEEEECC-------CEEHHHHSTTCCSSCCEEEEECBBTBSSSEEEEEET---------
T ss_pred CCcEEEEeC-----------CEEEEEeCCccccCCCcChHHhCCCCCCCceEEEEccccccCCCeEEEEeC---------
Confidence 579999988 3578886543332 12221100012222333332 689999987
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
+..|+||..++.=..-.-.+.| .. .+++.+++++|+|-| +..|+||..+.+
T Consensus 119 ----~~yw~yd~~~~~~~~~~w~gip--~~-daA~~~~g~~YfFkg-----------~~y~r~~~~~~~ 169 (192)
T d1qhua1 119 ----NRKWFWDLTTGTKKERSWPAVG--NC-TSALRWLGRYYCFQG-----------NQFLRFNPVSGE 169 (192)
T ss_dssp ----TEEEEEETTTTEEEEECCTTSC--CC-SEEEEETTEEEEEET-----------TEEEEECTTTCC
T ss_pred ----CeEEEEeCCCCCcccccccCcC--Cc-ceeEEeCCcEEEEEC-----------CEEEEEcCCcce
Confidence 4689999888742222222223 32 355567999999977 457888877754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=93.79 E-value=2.4 Score=38.60 Aligned_cols=194 Identities=13% Similarity=0.052 Sum_probs=96.3
Q ss_pred ceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCC
Q 006384 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPN 148 (647)
Q Consensus 71 ~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~ 148 (647)
.+.+++.|. +.+||+.++. -+.+.+||+.+.+-...-. .....+.++.. +..+++.+..
T Consensus 34 p~~va~spd-G~~l~v~~~~---------~~~i~v~d~~t~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----- 94 (301)
T d1l0qa2 34 PMGAVISPD-GTKVYVANAH---------SNDVSIIDTATNNVIATVP----AGSSPQGVAVSPDGKQVYVTNMA----- 94 (301)
T ss_dssp EEEEEECTT-SSEEEEEEGG---------GTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEETT-----
T ss_pred ceEEEEeCC-CCEEEEEECC---------CCEEEEEECCCCceeeeee----ccccccccccccccccccccccc-----
Confidence 356777763 3568877652 2478999999886543211 12223344433 3456655432
Q ss_pred CccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 149 ~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
-..+.+++..+.+...... .....+.++.. ++ .+++.+.. -..+..++..+........
T Consensus 95 ------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~dg~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 155 (301)
T d1l0qa2 95 ------SSTLSVIDTTSNTVAGTVK----TGKSPLGLALSPDGKKLYVTNNG---------DKTVSVINTVTKAVINTVS 155 (301)
T ss_dssp ------TTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEEEE
T ss_pred ------cceeeecccccceeeeecc----ccccceEEEeecCCCeeeeeecc---------ccceeeeeccccceeeecc
Confidence 1456778888776544322 11222233332 34 44444432 2356778887776554332
Q ss_pred CCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEE
Q 006384 227 RFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~ 304 (647)
. ...-..++.. +..+|+.+.... .+..++............+ ....++++
T Consensus 156 ~-------~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 207 (301)
T d1l0qa2 156 V-------GRSPKGIAVTPDGTKVYVANFDSM----------------SISVIDTVTNSVIDTVKVE-----AAPSGIAV 207 (301)
T ss_dssp C-------CSSEEEEEECTTSSEEEEEETTTT----------------EEEEEETTTTEEEEEEECS-----SEEEEEEE
T ss_pred c-------CCCceEEEeeccccceeeeccccc----------------ccccccccceeeeeccccc-----CCcceeec
Confidence 2 1111222333 445555543322 2556666666555543321 11223333
Q ss_pred E--CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 305 H--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 305 ~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
. +..+|+.+. .. ..+.|++||+.+.+
T Consensus 208 ~~~g~~~~v~~~-~~-----------~~~~v~v~D~~t~~ 235 (301)
T d1l0qa2 208 NPEGTKAYVTNV-DK-----------YFNTVSMIDTGTNK 235 (301)
T ss_dssp CTTSSEEEEEEE-CS-----------SCCEEEEEETTTTE
T ss_pred cccccccccccc-cc-----------eeeeeeeeecCCCe
Confidence 3 344555432 11 24669999988764
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=2.5 Score=38.76 Aligned_cols=112 Identities=12% Similarity=0.085 Sum_probs=61.3
Q ss_pred EEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeC
Q 006384 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYN 209 (647)
Q Consensus 130 ~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~ 209 (647)
....++..++.|+.. ..+.+||+.+.+-..... .. ...-.++...+.+++.|+.+ .
T Consensus 182 ~~~~~~~~l~s~~~d-----------g~i~~~d~~~~~~~~~~~--~~--~~~v~~~~~~~~~l~s~s~d---------~ 237 (342)
T d2ovrb2 182 SLQFDGIHVVSGSLD-----------TSIRVWDVETGNCIHTLT--GH--QSLTSGMELKDNILVSGNAD---------S 237 (342)
T ss_dssp EEEECSSEEEEEETT-----------SCEEEEETTTCCEEEEEC--CC--CSCEEEEEEETTEEEEEETT---------S
T ss_pred cccCCCCEEEEEeCC-----------CeEEEeecccceeeeEec--cc--ccceeEEecCCCEEEEEcCC---------C
Confidence 344466666777643 357888988776433222 11 11112333444556666643 4
Q ss_pred cEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEE
Q 006384 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (647)
Q Consensus 210 dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (647)
.+.+||+...+-...-... ........+...++.+++.|+.++. |.+||+.+.+..
T Consensus 238 ~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~s~Dg~----------------i~iwd~~tg~~i 293 (342)
T d2ovrb2 238 TVKIWDIKTGQCLQTLQGP----NKHQSAVTCLQFNKNFVITSSDDGT----------------VKLWDLKTGEFI 293 (342)
T ss_dssp CEEEEETTTCCEEEEECST----TSCSSCEEEEEECSSEEEEEETTSE----------------EEEEETTTCCEE
T ss_pred EEEEEeccccccccccccc----ceeeeceeecccCCCeeEEEcCCCE----------------EEEEECCCCCEE
Confidence 5888998776544332220 1122222333446667788887654 788998876543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.59 E-value=2.4 Score=40.46 Aligned_cols=150 Identities=10% Similarity=0.033 Sum_probs=72.1
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~ 213 (647)
++.+++.|+.. ..+.++|..+........ ..............+..++.|+. ...+.+
T Consensus 132 ~~~~l~s~~~d-----------g~v~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~---------~~~i~~ 189 (388)
T d1erja_ 132 DGKFLATGAED-----------RLIRIWDIENRKIVMILQ--GHEQDIYSLDYFPSGDKLVSGSG---------DRTVRI 189 (388)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEET---------TSEEEE
T ss_pred CCCcceecccc-----------cccccccccccccccccc--ccccccccccccccccccccccc---------ceeeee
Confidence 45667777643 347888888776654432 11111111111224445555553 245778
Q ss_pred EEcCCCceEEeccCCCCCCCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecC-
Q 006384 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI- 290 (647)
Q Consensus 214 yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~- 290 (647)
+|..+..-...... .. ....++.. ++.+++.|+.++. +.+|+..+.........
T Consensus 190 ~d~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~l~~~~~d~~----------------i~i~~~~~~~~~~~~~~~ 246 (388)
T d1erja_ 190 WDLRTGQCSLTLSI-----ED--GVTTVAVSPGDGKYIAAGSLDRA----------------VRVWDSETGFLVERLDSE 246 (388)
T ss_dssp EETTTTEEEEEEEC-----SS--CEEEEEECSTTCCEEEEEETTSC----------------EEEEETTTCCEEEEEC--
T ss_pred eecccccccccccc-----cc--ccccccccCCCCCeEEEEcCCCe----------------EEEeecccCccceeeccc
Confidence 88877654443322 11 11222222 5677777876654 77888876654433211
Q ss_pred CCCCC-Ccee-eEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 291 GMPPG-PRAG-FSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 291 g~~P~-~R~~-~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
..... .... .++++. ++..++.|+.. ..|.+||+.+..
T Consensus 247 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--------------~~i~iwd~~~~~ 287 (388)
T d1erja_ 247 NESGTGHKDSVYSVVFTRDGQSVVSGSLD--------------RSVKLWNLQNAN 287 (388)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETT--------------SEEEEEEC----
T ss_pred cccccCCCCCEEEEEECCCCCEEEEEECC--------------CcEEEEeccCCc
Confidence 00011 1111 223333 45666666542 347888876543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=93.30 E-value=3.6 Score=39.14 Aligned_cols=133 Identities=11% Similarity=0.131 Sum_probs=67.6
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCc--ceeEEEEE--CCEEEEEeCCcCCCCC
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPR--SAHQAVSW--KNYLYIFGGEFTSPNQ 149 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R--~~ha~v~~--~~~iyv~GG~~~~~~~ 149 (647)
.++.+ ++.||+...... ......+.+++||+.+..+..+..+. +..- .-+.++.. ++.|||..+.
T Consensus 23 pa~d~--dG~ly~~~~~~~--~~~~~~g~I~r~d~~~~~~~~~~~~~-~~~~~g~P~Gl~~~~dg~~l~vad~~------ 91 (314)
T d1pjxa_ 23 PVFDK--NGDFYIVAPEVE--VNGKPAGEILRIDLKTGKKTVICKPE-VNGYGGIPAGCQCDRDANQLFVADMR------ 91 (314)
T ss_dssp EEECT--TSCEEEEETTCE--ETTEECCEEEEECTTTCCEEEEECCE-ETTEECCEEEEEECSSSSEEEEEETT------
T ss_pred eEEeC--CCCEEEEECccc--cccccCCEEEEEECCCCcEEEEECCc-cccCCCcceeEEEeCCCCEEEEEECC------
Confidence 45555 678888754211 01123467999999999887665321 1111 12333333 3578887542
Q ss_pred ccccccCcEEEEECCCCcEEEcccCCCCCC-cceeEEEE-ECCEEEEEe--cccCCC----CceeeeCcEEEEEcCCCce
Q 006384 150 ERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-RSGHRMVL-YKHKIIVFG--GFYDTL----REVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 150 ~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~-R~~h~~~~-~~~~lyv~G--G~~~~~----~~~~~~~dv~~yD~~t~~W 221 (647)
+.+.++++.......+.......+ +.-+-.++ -++.||+.- +..... ........+|++++.. ++
T Consensus 92 ------~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~ 164 (314)
T d1pjxa_ 92 ------LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QM 164 (314)
T ss_dssp ------TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CE
T ss_pred ------CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ce
Confidence 458899998776554433211111 11122333 367898852 111100 0011234688888754 34
Q ss_pred EEe
Q 006384 222 QEI 224 (647)
Q Consensus 222 ~~v 224 (647)
..+
T Consensus 165 ~~~ 167 (314)
T d1pjxa_ 165 IQV 167 (314)
T ss_dssp EEE
T ss_pred eEe
Confidence 444
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=1.9 Score=40.88 Aligned_cols=148 Identities=14% Similarity=0.080 Sum_probs=73.4
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
++.+++.|+.. ..+.+||+...+...........+.. ...+.. ++.+++.|+.. ..+.
T Consensus 108 dg~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~d---------~~i~ 166 (337)
T d1gxra_ 108 DGCTLIVGGEA-----------STLSIWDLAAPTPRIKAELTSSAPAC-YALAISPDSKVCFSCCSD---------GNIA 166 (337)
T ss_dssp TSSEEEEEESS-----------SEEEEEECCCC--EEEEEEECSSSCE-EEEEECTTSSEEEEEETT---------SCEE
T ss_pred CCCEEEEeecc-----------cccccccccccccccccccccccccc-cccccccccccccccccc---------cccc
Confidence 45666777643 35788888776654433211111111 122222 45555555532 3578
Q ss_pred EEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCC
Q 006384 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (647)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g 291 (647)
.+++.+.+-...... ......+++.. ++..+++|+.++. +.+||+.+..-......
T Consensus 167 ~~~~~~~~~~~~~~~------~~~~v~~l~~s~~~~~~~~~~~d~~----------------v~i~d~~~~~~~~~~~~- 223 (337)
T d1gxra_ 167 VWDLHNQTLVRQFQG------HTDGASCIDISNDGTKLWTGGLDNT----------------VRSWDLREGRQLQQHDF- 223 (337)
T ss_dssp EEETTTTEEEEEECC------CSSCEEEEEECTTSSEEEEEETTSE----------------EEEEETTTTEEEEEEEC-
T ss_pred ccccccccccccccc------ccccccccccccccccccccccccc----------------ccccccccceeeccccc-
Confidence 888887654333222 11111222222 5566777776544 77888876543222111
Q ss_pred CCCCCceeeEEEEE-CCeEEEecceeccccCccccccccCCcEEEEECCCCcE
Q 006384 292 MPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (647)
Q Consensus 292 ~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W 343 (647)
+ ..-.++++. ++.+++.|+.. ..+.+||+.+..-
T Consensus 224 --~--~~i~~l~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~~ 258 (337)
T d1gxra_ 224 --T--SQIFSLGYCPTGEWLAVGMES--------------SNVEVLHVNKPDK 258 (337)
T ss_dssp --S--SCEEEEEECTTSSEEEEEETT--------------SCEEEEETTSSCE
T ss_pred --c--cceEEEEEcccccccceeccc--------------ccccccccccccc
Confidence 1 111233333 45666666542 4588888876653
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.87 Score=40.83 Aligned_cols=148 Identities=13% Similarity=0.220 Sum_probs=76.8
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEE----Eccc--CCCCCCcceeEEEE--ECCEEEEEecccC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE----QLNL--KGCPSPRSGHRMVL--YKHKIIVFGGFYD 200 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~----~~~~--~~~P~~R~~h~~~~--~~~~lyv~GG~~~ 200 (647)
+++.+++.+|+|-| ..+|+|+....... .+.. .++|.. .. ++.. .++++|+|-|.
T Consensus 11 Av~~~~G~~y~Fkg-------------~~ywr~~~~~~~~~~~P~~I~~~w~glp~~-ID-AAf~~~~~~k~yfFkg~-- 73 (195)
T d1itva_ 11 AIAEIGNQLYLFKD-------------GKYWRFSEGRGSRPQGPFLIADKWPALPRK-LD-SVFEEPLSKKLFFFSGR-- 73 (195)
T ss_dssp EEEEETTEEEEEET-------------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS-CS-EEEECTTTCCEEEEETT--
T ss_pred eEEEeCCEEEEEEC-------------CEEEEEeCCCCCcCCCcEEeeeecCCCCCC-cc-EEEEECCCCEEEEEecC--
Confidence 46677999999987 45777765433321 1111 123322 12 2222 25789999762
Q ss_pred CCCceeeeCcEEEEEcCCCce-EEeccCCCCCCCCC--ceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEE
Q 006384 201 TLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMWPSP--RSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL 277 (647)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~W-~~v~~~~~~~~P~~--R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y 277 (647)
.+|+|+-..... ..|... + +|.. +...+...-++++|+|=|. ..|+|
T Consensus 74 ---------~~~~y~~~~~~~Pk~i~~~--g-~p~~~~~idaa~~~~~g~~Y~FkG~------------------~y~ry 123 (195)
T d1itva_ 74 ---------QVWVYTGASVLGPRRLDKL--G-LGADVAQVTGALRSGRGKMLLFSGR------------------RLWRF 123 (195)
T ss_dssp ---------EEEEEETTEEEEEEEGGGG--T-CCTTCCCCCEEEECSTTEEEEEETT------------------EEEEE
T ss_pred ---------EEEEEcCccccCCEEhhhc--C-CCCCchheeeEEEcCCCeEEEEecc------------------EEEEE
Confidence 467776332111 122221 1 1222 2222222227899999663 37899
Q ss_pred eCCCCeEEE-----eec--CCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 278 DPRTWEWSK-----VKK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 278 d~~t~~W~~-----v~~--~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
|..+.+-.. +.. .| .|. .-.++....+.+|+|-|. ..|+||..+..
T Consensus 124 d~~~~~v~~gyPk~i~~~w~g-vp~--~idaAf~~~~~~Yffkg~----------------~y~r~~~~~~~ 176 (195)
T d1itva_ 124 DVKAQMVDPRSASEVDRMFPG-VPL--DTHDVFQFREKAYFCQDR----------------FYWRVSSRSEL 176 (195)
T ss_dssp ETTTTEECGGGCEEHHHHSTT-SCS--SCSEEEEETTEEEEEETT----------------EEEEEECCTTC
T ss_pred eCCcccccCCCccchhhhcCC-CCC--CCcEEEEeCCcEEEEECC----------------EEEEEcCCcee
Confidence 987764221 100 01 222 223455568899999773 36888865543
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.98 Score=40.49 Aligned_cols=138 Identities=17% Similarity=0.360 Sum_probs=71.3
Q ss_pred EEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE----EecC--CCCCCCcceeEEEEE--CCEEEEEeCCcC
Q 006384 74 LNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK----VISS--PNSPPPRSAHQAVSW--KNYLYIFGGEFT 145 (647)
Q Consensus 74 ~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~----~l~s--~~~P~~R~~ha~v~~--~~~iyv~GG~~~ 145 (647)
++.+ ++++|+|-|. .+|+|+....... .+.. +.+| ..--++... ++++|+|-|
T Consensus 12 v~~~---~G~~y~Fkg~-----------~ywr~~~~~~~~~~~P~~I~~~w~glp--~~IDAAf~~~~~~k~yfFkg--- 72 (195)
T d1itva_ 12 IAEI---GNQLYLFKDG-----------KYWRFSEGRGSRPQGPFLIADKWPALP--RKLDSVFEEPLSKKLFFFSG--- 72 (195)
T ss_dssp EEEE---TTEEEEEETT-----------EEEEECCSSSCCCEEEEEHHHHCTTSC--SSCSEEEECTTTCCEEEEET---
T ss_pred EEEe---CCEEEEEECC-----------EEEEEeCCCCCcCCCcEEeeeecCCCC--CCccEEEEECCCCEEEEEec---
Confidence 4455 6899999883 5677764433221 1111 1122 222222222 578999977
Q ss_pred CCCCccccccCcEEEEECCCCcE-EEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceE
Q 006384 146 SPNQERFHHYKDFWMLDLKTNQW-EQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ 222 (647)
Q Consensus 146 ~~~~~~~~~~~dv~~yD~~t~~W-~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~ 222 (647)
+.+|+|+-..-.. ..+...+.|..-..-.++.. ++++|+|=| +..|+||..+.+-.
T Consensus 73 ----------~~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG-----------~~y~ryd~~~~~v~ 131 (195)
T d1itva_ 73 ----------RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-----------RRLWRFDVKAQMVD 131 (195)
T ss_dssp ----------TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-----------TEEEEEETTTTEEC
T ss_pred ----------CEEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec-----------cEEEEEeCCccccc
Confidence 4578887432211 23333344433222223332 679999977 35789988765321
Q ss_pred -----EeccCCCCCCCCCceeeeEEEeCCEEEEEecc
Q 006384 223 -----EIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254 (647)
Q Consensus 223 -----~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~ 254 (647)
.|.....+ +|. .-.++...++.+|+|-|.
T Consensus 132 ~gyPk~i~~~w~g-vp~--~idaAf~~~~~~Yffkg~ 165 (195)
T d1itva_ 132 PRSASEVDRMFPG-VPL--DTHDVFQFREKAYFCQDR 165 (195)
T ss_dssp GGGCEEHHHHSTT-SCS--SCSEEEEETTEEEEEETT
T ss_pred CCCccchhhhcCC-CCC--CCcEEEEeCCcEEEEECC
Confidence 12111111 132 223445568899998764
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=2.9 Score=37.15 Aligned_cols=153 Identities=10% Similarity=0.178 Sum_probs=81.3
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEE--cccC--CCCCCcceeEEEEE--CCEEEEEecccCCC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQ--LNLK--GCPSPRSGHRMVLY--KHKIIVFGGFYDTL 202 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~--~~~~--~~P~~R~~h~~~~~--~~~lyv~GG~~~~~ 202 (647)
+++.+++.||+|-|. -+|+++........ +... ++|... -++... ++++|+|-|
T Consensus 16 Av~~~~G~~y~Fkg~-------------~~wr~~~~~~~~~p~~i~~~w~glp~~I--DAAf~~~~~~~~yfFkG----- 75 (195)
T d1su3a2 16 AITTIRGEVMFFKDR-------------FYMRTNPFYPEVELNFISVFWPQLPNGL--EAAYEFADRDEVRFFKG----- 75 (195)
T ss_dssp EEEEETTEEEEEETT-------------EEEECCTTSSSCEEEEGGGTCTTSCSSC--CEEEEEGGGTEEEEEET-----
T ss_pred EEEEcCCeEEEEeCC-------------EEEEeeCCCCccCccchHhhCcCCCCcc--cceEEecCCcEEEEECC-----
Confidence 666779999999883 35666655444322 2211 223322 233333 589999988
Q ss_pred CceeeeCcEEEEEcCCCc---eEEeccCCCCCCCCCceeeeEE-Ee--CCEEEEEecccCCCCCcccCCCCCceeeeEEE
Q 006384 203 REVRYYNDLYVFDLDQFK---WQEIKPRFGSMWPSPRSGFQFF-VY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (647)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~---W~~v~~~~~~~~P~~R~~~s~~-~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (647)
+.+|+|+-.+.. -..+.... + +|.....--++ .. ++++|+|-|. ..|+
T Consensus 76 ------~~y~~y~~~~~~~g~p~~i~~~~-G-~p~~~~~idaa~~~~~~~~~Y~FkG~------------------~y~r 129 (195)
T d1su3a2 76 ------NKYWAVQGQNVLHGYPKDIYSSF-G-FPRTVKHIDAALSEENTGKTYFFVAN------------------KYWR 129 (195)
T ss_dssp ------TEEEEEETTEECTTCSEEHHHHH-C-CCTTCCCCCEEEEETTTTEEEEEETT------------------EEEE
T ss_pred ------cEEEEEcCCccccCCCccchhhc-C-CCCCccccccccccCCCCeEEEEeCC------------------EEEE
Confidence 357778743221 11121100 0 12211112222 22 6799999874 3789
Q ss_pred EeCCCCeEEE-----eecC-CCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEEE
Q 006384 277 LDPRTWEWSK-----VKKI-GMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (647)
Q Consensus 277 yd~~t~~W~~-----v~~~-g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~ 345 (647)
||..+.+-.. +... .-.|. ..- ++...++++|+|-| +..|+||..+++=..
T Consensus 130 y~~~~~~vd~gyPk~I~~~w~Gvp~-~iD-AAf~~~g~~YfFkg----------------~~y~r~~~~~~~v~~ 186 (195)
T d1su3a2 130 YDEYKRSMDPGYPKMIAHDFPGIGH-KVD-AVFMKDGFFYFFHG----------------TRQYKFDPKTKRILT 186 (195)
T ss_dssp EETTTTEECSSCSEEHHHHSTTSCS-CCS-EEEEETTEEEEEET----------------TEEEEEETTTTEEEE
T ss_pred EeccCccccCCcccccccccCCCCC-Ccc-EEEEECCeEEEEEC----------------CEEEEEeCCcCEEEe
Confidence 9987764211 1110 11222 222 34456899999987 348899987765443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=92.70 E-value=4.2 Score=38.60 Aligned_cols=215 Identities=9% Similarity=-0.032 Sum_probs=110.9
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCcc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~ 151 (647)
..++.+ ++.||+..= ..+.+++|++.+......... ....-+.++.. ++.|||..-...
T Consensus 44 G~~~D~--~G~Ly~~D~---------~~g~I~ri~p~g~~~~~~~~~---~~~~p~gla~~~dG~l~va~~~~~------ 103 (319)
T d2dg1a1 44 GLNFDR--QGQLFLLDV---------FEGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDF------ 103 (319)
T ss_dssp EEEECT--TSCEEEEET---------TTCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTS------
T ss_pred eCEECC--CCCEEEEEC---------CCCEEEEEECCCCeEEEEEeC---CCCCeeEEEECCCCCEEEEecCCC------
Confidence 345554 466888743 124789999988765443221 11223444443 578888742111
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCC
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSM 231 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~ 231 (647)
.....+..++..+.....+.....+..+..-..+.-++.||+-.-.... ......++++++.....+.+...
T Consensus 104 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~---~~~~g~v~~~~~dg~~~~~~~~~---- 175 (319)
T d2dg1a1 104 -KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS---TNPLGGVYYVSPDFRTVTPIIQN---- 175 (319)
T ss_dssp -SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT---TBCCEEEEEECTTSCCEEEEEEE----
T ss_pred -ccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeeccccccc---ccCcceeEEEecccceeEEEeec----
Confidence 1235688888888776655432212233332333346788875321111 11345689999887777665432
Q ss_pred CCCCceeeeEEEe--CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC---eEEEeecC-CCCCCCceeeEEEEE
Q 006384 232 WPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW---EWSKVKKI-GMPPGPRAGFSMCVH 305 (647)
Q Consensus 232 ~P~~R~~~s~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~---~W~~v~~~-g~~P~~R~~~s~~~~ 305 (647)
...| .++++. ++.||+.--.. +.+++|++... .+...... ........-..+++-
T Consensus 176 ~~~p---nGia~s~dg~~lyvad~~~----------------~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD 236 (319)
T d2dg1a1 176 ISVA---NGIALSTDEKVLWVTETTA----------------NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 236 (319)
T ss_dssp ESSE---EEEEECTTSSEEEEEEGGG----------------TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred ccee---eeeeeccccceEEEecccC----------------CceEEEEEcCCCceeccccceeeeccCCccceeeeeEc
Confidence 0111 233433 45688875433 34788875432 11111100 001111122345553
Q ss_pred -CCeEEEecceeccccCccccccccCCcEEEEECCCCcEEEeEe
Q 006384 306 -KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 306 -~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
++.|||.--. -+.|.+||+....-..+..
T Consensus 237 ~~G~l~Va~~~--------------~g~V~~~~p~G~~l~~i~~ 266 (319)
T d2dg1a1 237 SDDNLYVAMYG--------------QGRVLVFNKRGYPIGQILI 266 (319)
T ss_dssp TTCCEEEEEET--------------TTEEEEECTTSCEEEEEEC
T ss_pred CCCCEEEEEcC--------------CCEEEEECCCCcEEEEEeC
Confidence 6778886421 2459999987655555655
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=92.37 E-value=3.8 Score=37.80 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=24.7
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE
Q 006384 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK 114 (647)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~ 114 (647)
|....-.++++.|. +..|||.+.. -+.++.||+.+.+=.
T Consensus 37 ~~~~~p~~l~~spD-G~~l~v~~~~---------~~~v~~~d~~t~~~~ 75 (346)
T d1jmxb_ 37 PDKFGPGTAMMAPD-NRTAYVLNNH---------YGDIYGIDLDTCKNT 75 (346)
T ss_dssp SSCCSSCEEEECTT-SSEEEEEETT---------TTEEEEEETTTTEEE
T ss_pred CCCCCcceEEECCC-CCEEEEEECC---------CCcEEEEeCccCeee
Confidence 33344456777762 3567777762 247899999887543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.19 E-value=1.4 Score=40.57 Aligned_cols=139 Identities=6% Similarity=-0.025 Sum_probs=69.3
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEE
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~ 212 (647)
++.+++.|+.. ..+..||+.+.+...+.....+ .. -.+++.. ++.+++.|+.. ..+.
T Consensus 147 ~~~~l~~g~~d-----------g~i~~~d~~~~~~~~~~~~~~~-~~-i~~~~~~~~~~~l~~~~~d---------~~i~ 204 (299)
T d1nr0a2 147 DKQFVAVGGQD-----------SKVHVYKLSGASVSEVKTIVHP-AE-ITSVAFSNNGAFLVATDQS---------RKVI 204 (299)
T ss_dssp TSCEEEEEETT-----------SEEEEEEEETTEEEEEEEEECS-SC-EEEEEECTTSSEEEEEETT---------SCEE
T ss_pred ccccccccccc-----------cccccccccccccccccccccc-cc-ccccccccccccccccccc---------cccc
Confidence 45667777642 4578888887776554431111 11 1122222 44555666542 3588
Q ss_pred EEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCC
Q 006384 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (647)
Q Consensus 213 ~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g 291 (647)
+||+.+........... .....-.+++.. ++.+++.||.++. +.+||+.+.....+....
T Consensus 205 ~~~~~~~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~sgs~dg~----------------i~iwd~~~~~~~~~~~~~ 265 (299)
T d1nr0a2 205 PYSVANNFELAHTNSWT---FHTAKVACVSWSPDNVRLATGSLDNS----------------VIVWNMNKPSDHPIIIKG 265 (299)
T ss_dssp EEEGGGTTEESCCCCCC---CCSSCEEEEEECTTSSEEEEEETTSC----------------EEEEETTCTTSCCEEETT
T ss_pred ccccccccccccccccc---ccccccccccccccccceEEEcCCCE----------------EEEEECCCCCcceEEEec
Confidence 99988765433221100 011111222333 6677888887655 778887665433322211
Q ss_pred CCCCCcee-eEEEEECCeEEEecce
Q 006384 292 MPPGPRAG-FSMCVHKKRALLFGGV 315 (647)
Q Consensus 292 ~~P~~R~~-~s~~~~~~~iyifGG~ 315 (647)
. ..... .+++..++..++.||.
T Consensus 266 ~--~~~~~v~~~~~~~~~~l~s~s~ 288 (299)
T d1nr0a2 266 A--HAMSSVNSVIWLNETTIVSAGQ 288 (299)
T ss_dssp S--STTSCEEEEEEEETTEEEEEET
T ss_pred C--CCCCcEEEEEECCCCEEEEEeC
Confidence 1 11112 2333445666777764
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.86 E-value=4.8 Score=37.15 Aligned_cols=185 Identities=8% Similarity=0.052 Sum_probs=97.6
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCC--cceeEEEEEC--CEEEEEeCCcCCC
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP--RSAHQAVSWK--NYLYIFGGEFTSP 147 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~--R~~ha~v~~~--~~iyv~GG~~~~~ 147 (647)
+.+++.+ ++.|||.-.. -+.+.+||+...--+.++....+.. ...+..+... +.+++..-.
T Consensus 26 ~gvavd~--dg~i~VaD~~---------n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---- 90 (279)
T d1q7fa_ 26 SGVAVNA--QNDIIVADTN---------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS---- 90 (279)
T ss_dssp EEEEECT--TCCEEEEEGG---------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----
T ss_pred cEEEEcC--CCCEEEEECC---------CCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccC----
Confidence 5666665 6789998541 2468889987543233332211111 2223334342 333332211
Q ss_pred CCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEecc
Q 006384 148 NQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (647)
Q Consensus 148 ~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~ 226 (647)
....+..++.....+..+... .....+..++. ++.+|+.... ...+++|++....-..+..
T Consensus 91 ------~~~~i~~~~~~g~~~~~~~~~---~~~~p~~~avd~~G~i~v~~~~---------~~~~~~~~~~g~~~~~~g~ 152 (279)
T d1q7fa_ 91 ------PTHQIQIYNQYGQFVRKFGAT---ILQHPRGVTVDNKGRIIVVECK---------VMRVIIFDQNGNVLHKFGC 152 (279)
T ss_dssp ------GGCEEEEECTTSCEEEEECTT---TCSCEEEEEECTTSCEEEEETT---------TTEEEEECTTSCEEEEEEC
T ss_pred ------CccccccccccccceeecCCC---cccccceeccccCCcEEEEeec---------cceeeEeccCCceeecccc
Confidence 124678888877666666442 22222333333 5678887553 2457788876654444432
Q ss_pred CCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE
Q 006384 227 RFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH 305 (647)
Q Consensus 227 ~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~ 305 (647)
. .....-..+++. ++.||+...... .+++||+.......+...+... .-.++++-
T Consensus 153 ~-----~~~~~~~~i~~d~~g~i~v~d~~~~----------------~V~~~d~~G~~~~~~g~~g~~~---~P~giavD 208 (279)
T d1q7fa_ 153 S-----KHLEFPNGVVVNDKQEIFISDNRAH----------------CVKVFNYEGQYLRQIGGEGITN---YPIGVGIN 208 (279)
T ss_dssp T-----TTCSSEEEEEECSSSEEEEEEGGGT----------------EEEEEETTCCEEEEESCTTTSC---SEEEEEEC
T ss_pred c-----ccccccceeeeccceeEEeeecccc----------------ceeeeecCCceeeeeccccccc---CCcccccc
Confidence 2 122222333333 678998876543 3889999877666664332221 22344443
Q ss_pred -CCeEEEec
Q 006384 306 -KKRALLFG 313 (647)
Q Consensus 306 -~~~iyifG 313 (647)
++.|||..
T Consensus 209 ~~G~i~Vad 217 (279)
T d1q7fa_ 209 SNGEILIAD 217 (279)
T ss_dssp TTCCEEEEE
T ss_pred cCCeEEEEE
Confidence 57788864
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=91.43 E-value=5.7 Score=37.18 Aligned_cols=164 Identities=10% Similarity=-0.047 Sum_probs=81.8
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCC--cceeEEEEECCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP--RSAHQAVSWKNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~--R~~ha~v~~~~~iyv~GG~~~~~~~~ 150 (647)
+++..+ ++.|+|... +.+++||+.+++++.+.......+ |.....+--++.||+.-......
T Consensus 63 ~i~~~~--dg~l~va~~-----------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~--- 126 (295)
T d2ghsa1 63 ALAKIS--DSKQLIASD-----------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAE--- 126 (295)
T ss_dssp EEEEEE--TTEEEEEET-----------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCC---
T ss_pred EEEEec--CCCEEEEEe-----------CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEecccccc---
Confidence 344443 577776432 258999999999988765332222 33333333367777754322111
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCC------ceE
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF------KWQ 222 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~------~W~ 222 (647)
...-..|.+..++...+.. .... ..+.+.. ++.+|+..-. .+.+++|++... ...
T Consensus 127 ----~~~g~l~~~~~g~~~~~~~---~~~~-~Ng~~~s~d~~~l~~~dt~---------~~~I~~~~~d~~~~~~~~~~~ 189 (295)
T d2ghsa1 127 ----TGAGSIYHVAKGKVTKLFA---DISI-PNSICFSPDGTTGYFVDTK---------VNRLMRVPLDARTGLPTGKAE 189 (295)
T ss_dssp ----TTCEEEEEEETTEEEEEEE---EESS-EEEEEECTTSCEEEEEETT---------TCEEEEEEBCTTTCCBSSCCE
T ss_pred ----ccceeEeeecCCcEEEEee---ccCC-cceeeecCCCceEEEeecc---------cceeeEeeecccccccccceE
Confidence 1223344444566555543 1111 1223332 4457765432 356888876421 111
Q ss_pred EeccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 223 EIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 223 ~v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
.....+ ...-.-.++++- ++.|||..-..+ .|.+|||.......+..
T Consensus 190 ~~~~~~----~~~g~pdG~~vD~~GnlWva~~~~g----------------~V~~~dp~G~~~~~i~l 237 (295)
T d2ghsa1 190 VFIDST----GIKGGMDGSVCDAEGHIWNARWGEG----------------AVDRYDTDGNHIARYEV 237 (295)
T ss_dssp EEEECT----TSSSEEEEEEECTTSCEEEEEETTT----------------EEEEECTTCCEEEEEEC
T ss_pred EEeccC----cccccccceEEcCCCCEEeeeeCCC----------------ceEEecCCCcEeeEecC
Confidence 111110 011112334443 677887632212 38899999888888754
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.32 E-value=5.3 Score=36.59 Aligned_cols=132 Identities=12% Similarity=0.074 Sum_probs=68.1
Q ss_pred cEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCCCc
Q 006384 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (647)
Q Consensus 102 dl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R 180 (647)
.+..||..+.+........ . ....+.... .+..++.|+.. ..+.+||..+......-. .. .
T Consensus 182 ~i~~~d~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~d-----------~~i~i~d~~~~~~~~~~~--~h--~ 243 (355)
T d1nexb2 182 TLIVWDVAQMKCLYILSGH--T-DRIYSTIYDHERKRCISASMD-----------TTIRIWDLENGELMYTLQ--GH--T 243 (355)
T ss_dssp CEEEEETTTTEEEEEECCC--S-SCEEEEEEETTTTEEEEEETT-----------SCEEEEETTTCCEEEEEC--CC--S
T ss_pred eeeeeecccccceeeeecc--c-cccccccccccceeeeccccc-----------ceEEeeeccccccccccc--cc--c
Confidence 5778888887665443321 1 122222322 44555555532 357788988776433321 11 1
Q ss_pred ceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCC
Q 006384 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (647)
Q Consensus 181 ~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~ 260 (647)
..-.++.+.+.+++.|+.+ ..+.+||+.+..-...... .......+...++.+++. |.++
T Consensus 244 ~~v~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~-g~d~---- 303 (355)
T d1nexb2 244 ALVGLLRLSDKFLVSAAAD---------GSIRGWDANDYSRKFSYHH------TNLSAITTFYVSDNILVS-GSEN---- 303 (355)
T ss_dssp SCCCEEEECSSEEEEECTT---------SEEEEEETTTCCEEEEEEC------TTCCCCCEEEECSSEEEE-EETT----
T ss_pred ccccccccccceeeeeecc---------cccccccccccceeccccc------CCceEEEEEcCCCCEEEE-EeCC----
Confidence 1123455566777777753 3577888876543222111 112222233446665554 4433
Q ss_pred cccCCCCCceeeeEEEEeCCCCe
Q 006384 261 DKNQSEKGIIHSDLWSLDPRTWE 283 (647)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~ 283 (647)
.+.+||+.+.+
T Consensus 304 ------------~i~vwd~~tg~ 314 (355)
T d1nexb2 304 ------------QFNIYNLRSGK 314 (355)
T ss_dssp ------------EEEEEETTTCC
T ss_pred ------------EEEEEECCCCC
Confidence 27788987764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=91.15 E-value=1.6 Score=41.08 Aligned_cols=145 Identities=10% Similarity=0.049 Sum_probs=77.7
Q ss_pred CcEEEEECCCCcEEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCC
Q 006384 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (647)
Q Consensus 156 ~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~ 235 (647)
..+++||..++...++.. ..+..+....-+++.++++|... -..++++|..+..-.++... +
T Consensus 24 g~v~v~d~~~~~~~~~~~----~~~v~~~~~spDg~~l~~~~~~~-------g~~v~v~d~~~~~~~~~~~~-----~-- 85 (360)
T d1k32a3 24 GQAFIQDVSGTYVLKVPE----PLRIRYVRRGGDTKVAFIHGTRE-------GDFLGIYDYRTGKAEKFEEN-----L-- 85 (360)
T ss_dssp TEEEEECTTSSBEEECSC----CSCEEEEEECSSSEEEEEEEETT-------EEEEEEEETTTCCEEECCCC-----C--
T ss_pred CeEEEEECCCCcEEEccC----CCCEEEEEECCCCCEEEEEEcCC-------CCEEEEEECCCCcEEEeeCC-----C--
Confidence 357888888887777632 23433222223677766666432 13488999999887766443 1
Q ss_pred ceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEec
Q 006384 236 RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFG 313 (647)
Q Consensus 236 R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifG 313 (647)
..-.+++.. ++..+++++.... ++.++..+.....+.... . .....++.. +++.++++
T Consensus 86 ~~v~~~~~spdg~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~---~-~~~~~~~~spdg~~la~~ 145 (360)
T d1k32a3 86 GNVFAMGVDRNGKFAVVANDRFE----------------IMTVDLETGKPTVIERSR---E-AMITDFTISDNSRFIAYG 145 (360)
T ss_dssp CSEEEEEECTTSSEEEEEETTSE----------------EEEEETTTCCEEEEEECS---S-SCCCCEEECTTSCEEEEE
T ss_pred ceEEeeeecccccccceeccccc----------------cccccccccceeeeeecc---c-ccccchhhccceeeeeee
Confidence 122233333 6666667666543 778888777655553321 1 111122222 56666665
Q ss_pred ceeccccCccccccccCCcEEEEECCCCc
Q 006384 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+...... ........+++||+.+..
T Consensus 146 ~~~~~~~----~~~~~~~~~~v~d~~~~~ 170 (360)
T d1k32a3 146 FPLKHGE----TDGYVMQAIHVYDMEGRK 170 (360)
T ss_dssp EEECSST----TCSCCEEEEEEEETTTTE
T ss_pred ccccccc----eeeccccceeeeccccCc
Confidence 5433111 011223357788877653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.04 E-value=6.2 Score=36.88 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=40.2
Q ss_pred CEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCc
Q 006384 190 HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGI 269 (647)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~ 269 (647)
+.+++.||.+ ..+.+||+.+.+....-.. ...+.....++....++.+++.|+.++.
T Consensus 218 ~~~l~s~~~d---------~~i~iwd~~~~~~~~~l~~--~~~~v~~~~~s~~~~dg~~l~s~s~D~~------------ 274 (325)
T d1pgua1 218 GEFVITVGSD---------RKISCFDGKSGEFLKYIED--DQEPVQGGIFALSWLDSQKFATVGADAT------------ 274 (325)
T ss_dssp CCEEEEEETT---------CCEEEEETTTCCEEEECCB--TTBCCCSCEEEEEESSSSEEEEEETTSE------------
T ss_pred ceeccccccc---------cceeeeeeccccccccccc--cccccccceeeeeccCCCEEEEEeCCCe------------
Confidence 5677777753 3588899887764332111 1112222223333346777888887654
Q ss_pred eeeeEEEEeCCCCeEEE
Q 006384 270 IHSDLWSLDPRTWEWSK 286 (647)
Q Consensus 270 ~~~dv~~yd~~t~~W~~ 286 (647)
+.+||+.+.+-.+
T Consensus 275 ----i~iwd~~~~~~~~ 287 (325)
T d1pgua1 275 ----IRVWDVTTSKCVQ 287 (325)
T ss_dssp ----EEEEETTTTEEEE
T ss_pred ----EEEEECCCCCEEE
Confidence 7788988776443
|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.70 E-value=2.9 Score=37.33 Aligned_cols=140 Identities=13% Similarity=0.270 Sum_probs=69.4
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE---EecCCCCC-CCcceeEEEEE--CCEEEEEeCCcCC
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK---VISSPNSP-PPRSAHQAVSW--KNYLYIFGGEFTS 146 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~---~l~s~~~P-~~R~~ha~v~~--~~~iyv~GG~~~~ 146 (647)
+++.+ ++.+|+|=|. .+|+++.....+. .+... .| .|..--++... ++.+|+|-|
T Consensus 17 Av~~~---~G~~y~Fkg~-----------~~wr~~~~~~~~~~P~~I~~~-w~glp~~IdAA~~~~~~~~~yffkg---- 77 (200)
T d1gena_ 17 GIAQI---RGEIFFFKDR-----------FIWRTVTPRDKPMGPLLVATF-WPELPEKIDAVYEAPQEEKAVFFAG---- 77 (200)
T ss_dssp EEEEE---TTEEEEEETT-----------EEEEESSTTSCCEEEEEGGGT-CTTSCSCCSEEEEETTTTEEEEEET----
T ss_pred EEEec---CCeEEEEeCC-----------EEEEEcCCCCCCCCcEehhhc-cCCCCCCceEEEEECCCCeEEEecC----
Confidence 45555 6899999773 3455543332221 22211 11 12212233333 678999987
Q ss_pred CCCccccccCcEEEEECCCCcE---EEcccCCCCCCccee-EEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 147 PNQERFHHYKDFWMLDLKTNQW---EQLNLKGCPSPRSGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 147 ~~~~~~~~~~dv~~yD~~t~~W---~~~~~~~~P~~R~~h-~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
+.+|+|+-.+... ..+...+.|..-..- ++..+ ++++|+|-| +..|+||..+.+
T Consensus 78 ---------~~~~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg-----------~~y~ryd~~~~~ 137 (200)
T d1gena_ 78 ---------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-----------DKFWRYNEVKKK 137 (200)
T ss_dssp ---------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-----------TEEEEEETTTTE
T ss_pred ---------ceEEEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeC-----------cEEEEeccccce
Confidence 4678887432111 223322334322222 33333 579999988 357899987654
Q ss_pred e-----EEeccCCCCCCCCCceeeeEEEe--CCEEEEEecc
Q 006384 221 W-----QEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (647)
Q Consensus 221 W-----~~v~~~~~~~~P~~R~~~s~~~~--~~~Iyv~GG~ 254 (647)
- ..|.....+ +|. +. .++... ++.+|+|-|.
T Consensus 138 vd~~yPk~I~~~w~g-vp~-~i-dAAf~~~~~g~~Yff~g~ 175 (200)
T d1gena_ 138 MDPGFPKLIADAWNA-IPD-NL-DAVVDLQGGGHSYFFKGA 175 (200)
T ss_dssp ECSSCCEEHHHHSSS-CCS-SC-SEEEECTTTCEEEEEETT
T ss_pred eccCcceehhhccCC-CCC-Cc-cEEEEecCCCEEEEEECC
Confidence 1 122211111 122 12 233333 6889999774
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.62 E-value=6.8 Score=36.60 Aligned_cols=68 Identities=12% Similarity=0.148 Sum_probs=40.8
Q ss_pred CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccc
Q 006384 245 QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDV 324 (647)
Q Consensus 245 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~ 324 (647)
.+.+++.||.++. +.+||+.+.+....-.....+....-++.+..+++.++.|+.+
T Consensus 217 ~~~~l~s~~~d~~----------------i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D-------- 272 (325)
T d1pgua1 217 SGEFVITVGSDRK----------------ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-------- 272 (325)
T ss_dssp TCCEEEEEETTCC----------------EEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT--------
T ss_pred cceeccccccccc----------------eeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCC--------
Confidence 3577777877655 7788987776443322111222222344444567777877743
Q ss_pred cccccCCcEEEEECCCCc
Q 006384 325 IMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 325 ~~~~~~ndl~~yd~~t~~ 342 (647)
..|.+||+.+++
T Consensus 273 ------~~i~iwd~~~~~ 284 (325)
T d1pgua1 273 ------ATIRVWDVTTSK 284 (325)
T ss_dssp ------SEEEEEETTTTE
T ss_pred ------CeEEEEECCCCC
Confidence 348889998765
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=90.60 E-value=11 Score=38.94 Aligned_cols=121 Identities=14% Similarity=0.161 Sum_probs=69.7
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCC--eEEEecCCC------CCCCcceeEEEEECCEEEEEeCCcCCCCCccc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN------SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~--~W~~l~s~~------~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~ 152 (647)
++.|||... .+.|+++|..+. .|+.-+... ..........+..++++|+...
T Consensus 77 ~g~vyv~t~----------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~---------- 136 (573)
T d1kb0a2 77 DGIMYVSAS----------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---------- 136 (573)
T ss_dssp TTEEEEECG----------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----------
T ss_pred CCEEEEECC----------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec----------
Confidence 788988654 257899999987 587533211 0011122345566888887532
Q ss_pred cccCcEEEEECCCCc--EEEcccCCCC-CCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccC
Q 006384 153 HHYKDFWMLDLKTNQ--WEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPR 227 (647)
Q Consensus 153 ~~~~dv~~yD~~t~~--W~~~~~~~~P-~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~ 227 (647)
-..++.+|..+.+ |+.-...+.. ........+++++.+|+- +.... ......|..||..|.+ |+.-...
T Consensus 137 --~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg-~~~~~---~~~~G~v~a~D~~TG~~~W~~~t~~ 210 (573)
T d1kb0a2 137 --DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIG-NGGAE---YGVRGYITAYDAETGERKWRWFSVP 210 (573)
T ss_dssp --TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEEC-CBCTT---TCCBCEEEEEETTTCCEEEEEESSC
T ss_pred --ccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEe-ecccc---ccccceEEEEecCCccceeeeeecc
Confidence 1468899988875 7654321111 111223346678888763 32211 1124579999999875 8765443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.31 E-value=0.97 Score=41.80 Aligned_cols=146 Identities=9% Similarity=0.133 Sum_probs=72.3
Q ss_pred EEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCc
Q 006384 73 SLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 73 s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~ 150 (647)
++++.| ++.+++.|+. + +.+..||+.+.+...+..... . ..-..+.+ ++.+++.|+..
T Consensus 141 ~~~~s~--~~~~l~~g~~--d-------g~i~~~d~~~~~~~~~~~~~~--~-~~i~~~~~~~~~~~l~~~~~d------ 200 (299)
T d1nr0a2 141 CVALSN--DKQFVAVGGQ--D-------SKVHVYKLSGASVSEVKTIVH--P-AEITSVAFSNNGAFLVATDQS------ 200 (299)
T ss_dssp EEEECT--TSCEEEEEET--T-------SEEEEEEEETTEEEEEEEEEC--S-SCEEEEEECTTSSEEEEEETT------
T ss_pred cccccc--cccccccccc--c-------ccccccccccccccccccccc--c-ccccccccccccccccccccc------
Confidence 344444 4566666662 1 367888888776654432111 1 11122333 34555556532
Q ss_pred cccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCC
Q 006384 151 RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~ 228 (647)
..+++||+.++........ .......-.++.+ ++.+++.||.+ +.+.+||+.+.....+....
T Consensus 201 -----~~i~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~sgs~d---------g~i~iwd~~~~~~~~~~~~~ 265 (299)
T d1nr0a2 201 -----RKVIPYSVANNFELAHTNS-WTFHTAKVACVSWSPDNVRLATGSLD---------NSVIVWNMNKPSDHPIIIKG 265 (299)
T ss_dssp -----SCEEEEEGGGTTEESCCCC-CCCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTCTTSCCEEETT
T ss_pred -----ccccccccccccccccccc-ccccccccccccccccccceEEEcCC---------CEEEEEECCCCCcceEEEec
Confidence 4588999887664332211 1111111122223 56677777753 45888998876554332221
Q ss_pred CCCCCCCcee-eeEEEeCCEEEEEecccCC
Q 006384 229 GSMWPSPRSG-FQFFVYQDEVFLYGGYSKE 257 (647)
Q Consensus 229 ~~~~P~~R~~-~s~~~~~~~Iyv~GG~~~~ 257 (647)
...... ..++..++..++.||.++.
T Consensus 266 ----~~~~~~v~~~~~~~~~~l~s~s~D~~ 291 (299)
T d1nr0a2 266 ----AHAMSSVNSVIWLNETTIVSAGQDSN 291 (299)
T ss_dssp ----SSTTSCEEEEEEEETTEEEEEETTSC
T ss_pred ----CCCCCcEEEEEECCCCEEEEEeCCCE
Confidence 111111 1222335556677776654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=89.77 E-value=8.3 Score=36.32 Aligned_cols=173 Identities=10% Similarity=0.033 Sum_probs=88.5
Q ss_pred eEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCcc
Q 006384 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQER 151 (647)
Q Consensus 72 ~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~ 151 (647)
+.+++.+ ++.|||..-..+. ....++.++..+.....+.....+..+..-.++.-++.||+..-.....
T Consensus 85 ~gla~~~--dG~l~va~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~---- 153 (319)
T d2dg1a1 85 AAIKIHK--DGRLFVCYLGDFK-----STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST---- 153 (319)
T ss_dssp EEEEECT--TSCEEEEECTTSS-----SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTT----
T ss_pred eEEEECC--CCCEEEEecCCCc-----cceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccc----
Confidence 4555555 5677775321011 1245777888777665544332222232222222257788864322111
Q ss_pred ccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCCc---e---EE
Q 006384 152 FHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---W---QE 223 (647)
Q Consensus 152 ~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~---W---~~ 223 (647)
.....++++++....+..+... +..| .++++- ++.||+.-- ..+.+++|++.... + ..
T Consensus 154 -~~~g~v~~~~~dg~~~~~~~~~-~~~p---nGia~s~dg~~lyvad~---------~~~~I~~~d~~~~g~~~~~~~~~ 219 (319)
T d2dg1a1 154 -NPLGGVYYVSPDFRTVTPIIQN-ISVA---NGIALSTDEKVLWVTET---------TANRLHRIALEDDGVTIQPFGAT 219 (319)
T ss_dssp -BCCEEEEEECTTSCCEEEEEEE-ESSE---EEEEECTTSSEEEEEEG---------GGTEEEEEEECTTSSSEEEEEEE
T ss_pred -cCcceeEEEecccceeEEEeec-ccee---eeeeeccccceEEEecc---------cCCceEEEEEcCCCceeccccce
Confidence 1245699999988777765431 1211 233332 456888643 24678889875431 1 11
Q ss_pred eccCCCCCCCCCceeeeEEEe-CCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeec
Q 006384 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (647)
Q Consensus 224 v~~~~~~~~P~~R~~~s~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~ 289 (647)
+.... .....-.++++- ++.|||..-... .|.+|++....-..+..
T Consensus 220 ~~~~~----~~~~~PdGl~vD~~G~l~Va~~~~g----------------~V~~~~p~G~~l~~i~~ 266 (319)
T d2dg1a1 220 IPYYF----TGHEGPDSCCIDSDDNLYVAMYGQG----------------RVLVFNKRGYPIGQILI 266 (319)
T ss_dssp EEEEC----CSSSEEEEEEEBTTCCEEEEEETTT----------------EEEEECTTSCEEEEEEC
T ss_pred eeecc----CCccceeeeeEcCCCCEEEEEcCCC----------------EEEEECCCCcEEEEEeC
Confidence 11110 111111234444 777888753322 38899998766666654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=89.25 E-value=7.3 Score=34.95 Aligned_cols=106 Identities=16% Similarity=0.089 Sum_probs=58.7
Q ss_pred CEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEE
Q 006384 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFW 159 (647)
Q Consensus 82 ~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~ 159 (647)
.++||.+.. -+.+.++|+.+.+....-. ....-+.++.- +.+||+.++. -+.+.
T Consensus 2 ~~~yV~~~~---------~~~v~v~D~~t~~~~~~i~----~g~~p~~va~spdG~~l~v~~~~-----------~~~i~ 57 (301)
T d1l0qa2 2 TFAYIANSE---------SDNISVIDVTSNKVTATIP----VGSNPMGAVISPDGTKVYVANAH-----------SNDVS 57 (301)
T ss_dssp EEEEEEETT---------TTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEEGG-----------GTEEE
T ss_pred eEEEEEECC---------CCEEEEEECCCCeEEEEEE----CCCCceEEEEeCCCCEEEEEECC-----------CCEEE
Confidence 467887762 1368899999998764322 11122334333 4578887653 25689
Q ss_pred EEECCCCcEEEcccCCCCCCcceeEEEEE-CC-EEEEEecccCCCCceeeeCcEEEEEcCCCceEEe
Q 006384 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (647)
Q Consensus 160 ~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~-~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v 224 (647)
+||+.++.-...- +....-+.++.. ++ .+++.+.. -..+.+++..+.+....
T Consensus 58 v~d~~t~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 111 (301)
T d1l0qa2 58 IIDTATNNVIATV----PAGSSPQGVAVSPDGKQVYVTNMA---------SSTLSVIDTTSNTVAGT 111 (301)
T ss_dssp EEETTTTEEEEEE----ECSSSEEEEEECTTSSEEEEEETT---------TTEEEEEETTTTEEEEE
T ss_pred EEECCCCceeeee----eccccccccccccccccccccccc---------cceeeecccccceeeee
Confidence 9999887643321 222223344443 33 45554432 13567778877754443
|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.81 E-value=3.6 Score=36.66 Aligned_cols=149 Identities=9% Similarity=0.222 Sum_probs=75.8
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEE---EcccC--CCCCCcceeEEEE--ECCEEEEEecccCC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE---QLNLK--GCPSPRSGHRMVL--YKHKIIVFGGFYDT 201 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~---~~~~~--~~P~~R~~h~~~~--~~~~lyv~GG~~~~ 201 (647)
+++.+++.+|+|=| +.+|+++.....+. .+... ++|... . ++.. .++++|+|-|
T Consensus 17 Av~~~~G~~y~Fkg-------------~~~wr~~~~~~~~~~P~~I~~~w~glp~~I-d-AA~~~~~~~~~yffkg---- 77 (200)
T d1gena_ 17 GIAQIRGEIFFFKD-------------RFIWRTVTPRDKPMGPLLVATFWPELPEKI-D-AVYEAPQEEKAVFFAG---- 77 (200)
T ss_dssp EEEEETTEEEEEET-------------TEEEEESSTTSCCEEEEEGGGTCTTSCSCC-S-EEEEETTTTEEEEEET----
T ss_pred EEEecCCeEEEEeC-------------CEEEEEcCCCCCCCCcEehhhccCCCCCCc-e-EEEEECCCCeEEEecC----
Confidence 66777999999977 34566654433322 22221 223322 2 2332 2678999987
Q ss_pred CCceeeeCcEEEEEcCCCce---EEeccCCCCCCCCCceeeeEE-Ee--CCEEEEEecccCCCCCcccCCCCCceeeeEE
Q 006384 202 LREVRYYNDLYVFDLDQFKW---QEIKPRFGSMWPSPRSGFQFF-VY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLW 275 (647)
Q Consensus 202 ~~~~~~~~dv~~yD~~t~~W---~~v~~~~~~~~P~~R~~~s~~-~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~ 275 (647)
+..|+|+-.+... ..+... + +|..-..--+| .. ++++|+|-|. ..|
T Consensus 78 -------~~~~~y~~~~~~~gyPk~i~~~--g-~p~~~~~iDAA~~~~~~g~~YfFkg~------------------~y~ 129 (200)
T d1gena_ 78 -------NEYWIYSASTLERGYPKPLTSL--G-LPPDVQRVDAAFNWSKNKKTYIFAGD------------------KFW 129 (200)
T ss_dssp -------TEEEEEETTEECTTCSEEGGGG--T-CCTTCCCCSEEEEETTTTEEEEEETT------------------EEE
T ss_pred -------ceEEEEcCcccccCCCceehhc--C-CCCCccceeeEEEECCCCeEEEEeCc------------------EEE
Confidence 3467776432111 111111 1 12211122222 22 6899999873 378
Q ss_pred EEeCCCCeEEE-----eec-CCCCCCCceeeEEEEE--CCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 276 SLDPRTWEWSK-----VKK-IGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 276 ~yd~~t~~W~~-----v~~-~g~~P~~R~~~s~~~~--~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
+||..+.+-.. +.. -...|. +. .++... ++++|+|=|. ..|.||..+.+
T Consensus 130 ryd~~~~~vd~~yPk~I~~~w~gvp~-~i-dAAf~~~~~g~~Yff~g~----------------~y~r~d~~~~~ 186 (200)
T d1gena_ 130 RYNEVKKKMDPGFPKLIADAWNAIPD-NL-DAVVDLQGGGHSYFFKGA----------------YYLKLENQSLK 186 (200)
T ss_dssp EEETTTTEECSSCCEEHHHHSSSCCS-SC-SEEEECTTTCEEEEEETT----------------EEEEEETTEEE
T ss_pred EeccccceeccCcceehhhccCCCCC-Cc-cEEEEecCCCEEEEEECC----------------EEEEEECCceE
Confidence 99987755221 111 011222 22 233332 5889999773 36888865543
|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=87.85 E-value=8.3 Score=33.86 Aligned_cols=100 Identities=17% Similarity=0.324 Sum_probs=55.5
Q ss_pred CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcE---EEccc--CCCCCCcceeEEEEE------CCEEEEEecccCCC
Q 006384 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW---EQLNL--KGCPSPRSGHRMVLY------KHKIIVFGGFYDTL 202 (647)
Q Consensus 134 ~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W---~~~~~--~~~P~~R~~h~~~~~------~~~lyv~GG~~~~~ 202 (647)
++++|+|-| +.+|+|+-.+... ..+.. .++| ..-.++..+ ++++|+|-|
T Consensus 59 ~~~~yfFkG-------------~~yw~y~~~~~~~gyPk~i~~~~~glp--~~iDAA~~~~~~~~~~~~~yfFkg----- 118 (192)
T d1qhua1 59 HTSVYLIKG-------------DKVWVYTSEKNEKVYPKSLQDEFPGIP--FPLDAAVECHRGECQDEGILFFQG----- 118 (192)
T ss_dssp TTEEEEEET-------------TEEEEECC-------CEEHHHHSTTCC--SSCCEEEEECBBTBSSSEEEEEET-----
T ss_pred CCcEEEEeC-------------CEEEEEeCCccccCCCcChHHhCCCCC--CCceEEEEccccccCCCeEEEEeC-----
Confidence 579999988 4688887543332 12221 1223 222233333 689999987
Q ss_pred CceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCC
Q 006384 203 REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (647)
Q Consensus 203 ~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (647)
+..|.||..+.. .+.....+ +| .. .+++..++.+|+|-|. ..|+||..+.
T Consensus 119 ------~~yw~yd~~~~~--~~~~~w~g-ip--~~-daA~~~~g~~YfFkg~------------------~y~r~~~~~~ 168 (192)
T d1qhua1 119 ------NRKWFWDLTTGT--KKERSWPA-VG--NC-TSALRWLGRYYCFQGN------------------QFLRFNPVSG 168 (192)
T ss_dssp ------TEEEEEETTTTE--EEEECCTT-SC--CC-SEEEEETTEEEEEETT------------------EEEEECTTTC
T ss_pred ------CeEEEEeCCCCC--cccccccC-cC--Cc-ceeEEeCCcEEEEECC------------------EEEEEcCCcc
Confidence 346889987763 11111111 12 22 2444568999999774 3678887765
Q ss_pred e
Q 006384 283 E 283 (647)
Q Consensus 283 ~ 283 (647)
+
T Consensus 169 ~ 169 (192)
T d1qhua1 169 E 169 (192)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=86.95 E-value=9 Score=39.51 Aligned_cols=123 Identities=13% Similarity=0.066 Sum_probs=70.9
Q ss_pred EEEEECCEEEEEeCCcCCCCCccccccCcEEEEECCCC--cEEEcccCCC------CCCcceeEEEEECCEEEEEecccC
Q 006384 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC------PSPRSGHRMVLYKHKIIVFGGFYD 200 (647)
Q Consensus 129 a~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~--~W~~~~~~~~------P~~R~~h~~~~~~~~lyv~GG~~~ 200 (647)
+=++.++.|||..+ .+.|+.+|..|+ .|+.-+.... .........+.++++||+...
T Consensus 61 tPiv~~g~vyv~t~------------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--- 125 (560)
T d1kv9a2 61 TPLFHDGVIYTSMS------------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--- 125 (560)
T ss_dssp CCEEETTEEEEEEG------------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---
T ss_pred CCEEECCEEEEECC------------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC---
Confidence 34678999999764 257899999988 4875322100 111223345667888877543
Q ss_pred CCCceeeeCcEEEEEcCCCc--eEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEe
Q 006384 201 TLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (647)
Q Consensus 201 ~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (647)
-..|+.+|..+.+ |......+ .+......+.+++++.+|+-+..... .....|..||
T Consensus 126 -------~g~l~Alda~tG~~~w~~~~~~~---~~~~~~~~~p~v~~~~vivg~~~~~~-----------~~~G~v~a~D 184 (560)
T d1kv9a2 126 -------DGRLIALDAKTGKAIWSQQTTDP---AKPYSITGAPRVVKGKVIIGNGGAEY-----------GVRGFVSAYD 184 (560)
T ss_dssp -------TSEEEEEETTTCCEEEEEECSCT---TSSCBCCSCCEEETTEEEECCBCTTT-----------CCBCEEEEEE
T ss_pred -------CCEEEEEECCCCcEEeccCccCc---ccceeeeeeeeeecCcccccccceec-----------cccceEEEEE
Confidence 2458889988764 76543321 11222223445667777764332221 2334688999
Q ss_pred CCCC--eEEEe
Q 006384 279 PRTW--EWSKV 287 (647)
Q Consensus 279 ~~t~--~W~~v 287 (647)
..+. .|+.-
T Consensus 185 ~~TG~~~W~~~ 195 (560)
T d1kv9a2 185 ADTGKLAWRFY 195 (560)
T ss_dssp TTTCCEEEEEE
T ss_pred CCCceEEeeee
Confidence 8765 57664
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=86.65 E-value=20 Score=36.90 Aligned_cols=119 Identities=11% Similarity=0.135 Sum_probs=67.1
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECC-CC--eEEEecCCCCCCCcc-------eeEEEEECCEEEEEeCCcCCCCCc
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVE-KQ--EWKVISSPNSPPPRS-------AHQAVSWKNYLYIFGGEFTSPNQE 150 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~-~~--~W~~l~s~~~P~~R~-------~ha~v~~~~~iyv~GG~~~~~~~~ 150 (647)
++.|||..+. -+.++.+|.. +. .|+.-+... +..+. .-.++..+++||+...
T Consensus 62 ~g~vyv~t~~---------~~~v~Alda~~tG~~~W~~~~~~~-~~~~~~~~~~~~~rg~a~~~~~i~~~~~-------- 123 (571)
T d2ad6a1 62 GDMMYVHSAF---------PNNTYALNLNDPGKIVWQHKPKQD-ASTKAVMCCDVVDRGLAYGAGQIVKKQA-------- 123 (571)
T ss_dssp TTEEEEECST---------TTCEEEEETTCTTSEEEEECCCCC-GGGGGGCTTCSCCCCCEEETTEEEEECT--------
T ss_pred CCEEEEecCC---------CCeEEEEeCCCCCceEEEecCCCC-cccccccccCcCCCcceeeCCeEEEEeC--------
Confidence 7899987651 1368888863 43 687543211 11111 1134566888887532
Q ss_pred cccccCcEEEEECCCCc--EEEcccCCCCCCcceeEEEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEec
Q 006384 151 RFHHYKDFWMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (647)
Q Consensus 151 ~~~~~~dv~~yD~~t~~--W~~~~~~~~P~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~ 225 (647)
-..++.+|.++++ |..-.....+.......-+++++.||+-+.... ......|..||..|.+ |+.-.
T Consensus 124 ----~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~----~~~~G~v~a~D~~TG~~~W~~~t 194 (571)
T d2ad6a1 124 ----NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAE----LGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGG----GTCCCEEEEEETTTCCEEEEEES
T ss_pred ----CCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeecccc----ccccCcEEEEECCCCcEEEEEec
Confidence 1468899999885 754321101222222334678899887543221 1134679999998765 86543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.51 E-value=11 Score=34.08 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=50.2
Q ss_pred CcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEee
Q 006384 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (647)
Q Consensus 209 ~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~ 288 (647)
..+..||..+.+....... .............+..++.|+.++. +.+|+..+......-
T Consensus 181 ~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~----------------i~i~d~~~~~~~~~~ 239 (355)
T d1nexb2 181 NTLIVWDVAQMKCLYILSG-----HTDRIYSTIYDHERKRCISASMDTT----------------IRIWDLENGELMYTL 239 (355)
T ss_dssp SCEEEEETTTTEEEEEECC-----CSSCEEEEEEETTTTEEEEEETTSC----------------EEEEETTTCCEEEEE
T ss_pred ceeeeeecccccceeeeec-----cccccccccccccceeeecccccce----------------EEeeecccccccccc
Confidence 3577888877665443332 1122222222225566667766544 678887766543332
Q ss_pred cCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCc
Q 006384 289 KIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (647)
Q Consensus 289 ~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~ 342 (647)
.. . .....++...+..++.|+.+ ..|.+||+.+..
T Consensus 240 ~~-h----~~~v~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~ 274 (355)
T d1nexb2 240 QG-H----TALVGLLRLSDKFLVSAAAD--------------GSIRGWDANDYS 274 (355)
T ss_dssp CC-C----SSCCCEEEECSSEEEEECTT--------------SEEEEEETTTCC
T ss_pred cc-c----cccccccccccceeeeeecc--------------cccccccccccc
Confidence 21 1 11123344566777777643 348888887654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=85.31 E-value=18 Score=35.33 Aligned_cols=188 Identities=15% Similarity=0.109 Sum_probs=93.5
Q ss_pred CcEEEEECCCCeEEEecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCCC
Q 006384 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (647)
Q Consensus 101 ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~ 178 (647)
+.+..+|..+.+-...-. ....-|.++.- +.+||+.+ .. ..+.++|+.+..-..+.. .+.
T Consensus 42 g~v~v~D~~t~~v~~~~~----~g~~~~~v~fSpDG~~l~~~s-~d-----------g~v~~~d~~t~~~~~~~~--i~~ 103 (432)
T d1qksa2 42 GQIALIDGSTYEIKTVLD----TGYAVHISRLSASGRYLFVIG-RD-----------GKVNMIDLWMKEPTTVAE--IKI 103 (432)
T ss_dssp TEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSCEEEEEE-TT-----------SEEEEEETTSSSCCEEEE--EEC
T ss_pred CEEEEEECCCCcEEEEEe----CCCCeeEEEECCCCCEEEEEc-CC-----------CCEEEEEeeCCCceEEEE--Eec
Confidence 468888998876553321 22233444433 45676653 21 458889988776433322 122
Q ss_pred CcceeEEEEE-------CCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCC------CCCCCceeeeEEEeC
Q 006384 179 PRSGHRMVLY-------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS------MWPSPRSGFQFFVYQ 245 (647)
Q Consensus 179 ~R~~h~~~~~-------~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~------~~P~~R~~~s~~~~~ 245 (647)
.. +|...++ +.+||+.+.. .+.+.+||..+.+-......... ..+.+|....++..+
T Consensus 104 ~~-~~~~~~~s~~~SpDG~~l~vs~~~---------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d 173 (432)
T d1qksa2 104 GS-EARSIETSKMEGWEDKYAIAGAYW---------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY 173 (432)
T ss_dssp CS-EEEEEEECCSTTCTTTEEEEEEEE---------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred CC-CCCCeEEecccCCCCCEEEEEcCC---------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCC
Confidence 22 2322222 3467776553 35688999998876654332110 112233222222223
Q ss_pred C-EEEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEE-CCeEEEecceeccccCcc
Q 006384 246 D-EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGD 323 (647)
Q Consensus 246 ~-~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~-~~~iyifGG~~~~~~~~~ 323 (647)
+ .+|+-.... +.++.++..+..-.++... +....-+.+++. +++.++++...
T Consensus 174 g~~~~vs~~~~----------------~~i~~~d~~~~~~~~~~~i---~~g~~~~~~~~spdg~~~~va~~~------- 227 (432)
T d1qksa2 174 RPEFIVNVKET----------------GKILLVDYTDLNNLKTTEI---SAERFLHDGGLDGSHRYFITAANA------- 227 (432)
T ss_dssp SSEEEEEETTT----------------TEEEEEETTCSSEEEEEEE---ECCSSEEEEEECTTSCEEEEEEGG-------
T ss_pred CCEEEEEEccC----------------CeEEEEEccCCCcceEEEE---cccCccccceECCCCCEEEEeccc-------
Confidence 3 344433322 2377777765443333221 233334555555 44444433322
Q ss_pred ccccccCCcEEEEECCCCcEEEeEe
Q 006384 324 VIMSLFLNELYGFQLDNHRWYPLEL 348 (647)
Q Consensus 324 ~~~~~~~ndl~~yd~~t~~W~~l~~ 348 (647)
.+.+.++|..+.+......
T Consensus 228 ------~~~v~v~d~~~~~~~~~~~ 246 (432)
T d1qksa2 228 ------RNKLVVIDTKEGKLVAIED 246 (432)
T ss_dssp ------GTEEEEEETTTTEEEEEEE
T ss_pred ------cceEEEeecccceEEEEec
Confidence 3568888888776655444
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=84.27 E-value=19 Score=35.24 Aligned_cols=167 Identities=12% Similarity=0.056 Sum_probs=84.8
Q ss_pred CCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE---EecCCCCCCCcceeEEEEE-------CCE
Q 006384 67 SPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK---VISSPNSPPPRSAHQAVSW-------KNY 136 (647)
Q Consensus 67 ~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~---~l~s~~~P~~R~~ha~v~~-------~~~ 136 (647)
....-|.+++.|. +.+||+ ++. + +.+..||+.+.+-. .++.. .+|...++ +..
T Consensus 60 ~g~~~~~v~fSpD-G~~l~~-~s~--d-------g~v~~~d~~t~~~~~~~~i~~~------~~~~~~~~s~~~SpDG~~ 122 (432)
T d1qksa2 60 TGYAVHISRLSAS-GRYLFV-IGR--D-------GKVNMIDLWMKEPTTVAEIKIG------SEARSIETSKMEGWEDKY 122 (432)
T ss_dssp CSSCEEEEEECTT-SCEEEE-EET--T-------SEEEEEETTSSSCCEEEEEECC------SEEEEEEECCSTTCTTTE
T ss_pred CCCCeeEEEECCC-CCEEEE-EcC--C-------CCEEEEEeeCCCceEEEEEecC------CCCCCeEEecccCCCCCE
Confidence 4445577777772 344554 442 1 35788888776433 33221 12222222 346
Q ss_pred EEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCC---------CCCcceeEEEEECC-EEEEEecccCCCCcee
Q 006384 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC---------PSPRSGHRMVLYKH-KIIVFGGFYDTLREVR 206 (647)
Q Consensus 137 iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~---------P~~R~~h~~~~~~~-~lyv~GG~~~~~~~~~ 206 (647)
||+.+.. -..+.+||..+.+-........ +.+|....++..++ .+|+-...
T Consensus 123 l~vs~~~-----------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~-------- 183 (432)
T d1qksa2 123 AIAGAYW-----------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-------- 183 (432)
T ss_dssp EEEEEEE-----------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT--------
T ss_pred EEEEcCC-----------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc--------
Confidence 7776542 2568899999887655432110 22332222222233 44443321
Q ss_pred eeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEe-CCE-EEEEecccCCCCCcccCCCCCceeeeEEEEeCCCCeE
Q 006384 207 YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (647)
Q Consensus 207 ~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~-~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (647)
.+.++.+|..+.+-..+... +.+..-+.++.. +++ +|+..... +.+..++..+...
T Consensus 184 -~~~i~~~d~~~~~~~~~~~i-----~~g~~~~~~~~spdg~~~~va~~~~----------------~~v~v~d~~~~~~ 241 (432)
T d1qksa2 184 -TGKILLVDYTDLNNLKTTEI-----SAERFLHDGGLDGSHRYFITAANAR----------------NKLVVIDTKEGKL 241 (432)
T ss_dssp -TTEEEEEETTCSSEEEEEEE-----ECCSSEEEEEECTTSCEEEEEEGGG----------------TEEEEEETTTTEE
T ss_pred -CCeEEEEEccCCCcceEEEE-----cccCccccceECCCCCEEEEecccc----------------ceEEEeecccceE
Confidence 35678888777654444443 333334445555 333 44444332 2477888887766
Q ss_pred EEeecCC
Q 006384 285 SKVKKIG 291 (647)
Q Consensus 285 ~~v~~~g 291 (647)
......+
T Consensus 242 ~~~~~~g 248 (432)
T d1qksa2 242 VAIEDTG 248 (432)
T ss_dssp EEEEECS
T ss_pred EEEeccC
Confidence 6654443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=83.79 E-value=15 Score=33.14 Aligned_cols=108 Identities=13% Similarity=0.041 Sum_probs=53.4
Q ss_pred CcEEEEECCCCeEE-EecCCCCCCCcceeEEEEE--CCEEEEEeCCcCCCCCccccccCcEEEEECCCCcEEEcccCCCC
Q 006384 101 GDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (647)
Q Consensus 101 ndl~~yd~~~~~W~-~l~s~~~P~~R~~ha~v~~--~~~iyv~GG~~~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P 177 (647)
+.|.+||..+.+-. .++... ....-++++.- +..||+.|+. ...|.+||+.+++.........+
T Consensus 11 ~~v~v~D~~s~~~~~~i~~~~--~~~~~~~i~~spDg~~l~v~~~~-----------~~~v~v~D~~t~~~~~~~~~~~~ 77 (337)
T d1pbyb_ 11 DKLVVIDTEKMAVDKVITIAD--AGPTPMVPMVAPGGRIAYATVNK-----------SESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTT--CTTCCCCEEECTTSSEEEEEETT-----------TTEEEEEETTTCCEEEEEECCBT
T ss_pred CEEEEEECCCCeEEEEEECCC--CCCCccEEEECCCCCEEEEEECC-----------CCeEEEEECCCCcEEEEEecCCC
Confidence 57899999987643 333221 11222233332 4578888753 24699999999876543321111
Q ss_pred C--CcceeEEEEE--CCEEEEEecccCCCC--ceeeeCcEEEEEcCCCce
Q 006384 178 S--PRSGHRMVLY--KHKIIVFGGFYDTLR--EVRYYNDLYVFDLDQFKW 221 (647)
Q Consensus 178 ~--~R~~h~~~~~--~~~lyv~GG~~~~~~--~~~~~~dv~~yD~~t~~W 221 (647)
. ....+.+++. ++++|+.+....... .......+..+|..+..=
T Consensus 78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (337)
T d1pbyb_ 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR 127 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE
Confidence 1 1112223332 345555443211110 011235677788877653
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.77 E-value=15 Score=33.01 Aligned_cols=112 Identities=10% Similarity=0.093 Sum_probs=62.2
Q ss_pred EEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCceEEeccCCCCCCCCCceeeeEEEeCCEEEEEecccCCCCCcccC
Q 006384 185 MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQ 264 (647)
Q Consensus 185 ~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~W~~v~~~~~~~~P~~R~~~s~~~~~~~Iyv~GG~~~~~~~~~~~ 264 (647)
....++..++.|+.+ ..+.+||+.+.+-...... . ...-.++ ...+.+++.|+.++.
T Consensus 182 ~~~~~~~~l~s~~~d---------g~i~~~d~~~~~~~~~~~~-----~-~~~v~~~-~~~~~~l~s~s~d~~------- 238 (342)
T d2ovrb2 182 SLQFDGIHVVSGSLD---------TSIRVWDVETGNCIHTLTG-----H-QSLTSGM-ELKDNILVSGNADST------- 238 (342)
T ss_dssp EEEECSSEEEEEETT---------SCEEEEETTTCCEEEEECC-----C-CSCEEEE-EEETTEEEEEETTSC-------
T ss_pred cccCCCCEEEEEeCC---------CeEEEeecccceeeeEecc-----c-ccceeEE-ecCCCEEEEEcCCCE-------
Confidence 444566667777753 3578888877654332221 1 1111222 334456677776654
Q ss_pred CCCCceeeeEEEEeCCCCeEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEECCCCcEE
Q 006384 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (647)
Q Consensus 265 ~~~~~~~~dv~~yd~~t~~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd~~t~~W~ 344 (647)
+.+||.....-...-.. .........+...++.+++.|+.+ ..|.+||+.+++-.
T Consensus 239 ---------i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~s~D--------------g~i~iwd~~tg~~i 293 (342)
T d2ovrb2 239 ---------VKIWDIKTGQCLQTLQG--PNKHQSAVTCLQFNKNFVITSSDD--------------GTVKLWDLKTGEFI 293 (342)
T ss_dssp ---------EEEEETTTCCEEEEECS--TTSCSSCEEEEEECSSEEEEEETT--------------SEEEEEETTTCCEE
T ss_pred ---------EEEEecccccccccccc--cceeeeceeecccCCCeeEEEcCC--------------CEEEEEECCCCCEE
Confidence 77888876544333221 112223334444567777777743 35899999887653
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=82.38 E-value=4.3 Score=42.26 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=71.4
Q ss_pred EEEECCEEEEEecccCCCCceeeeCcEEEEEcCCCc--eEEeccCCCCC---CCCCceeeeEEEeCCEEEEEecccCCCC
Q 006384 185 MVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSM---WPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (647)
Q Consensus 185 ~~~~~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~--W~~v~~~~~~~---~P~~R~~~s~~~~~~~Iyv~GG~~~~~~ 259 (647)
-++++++||+... .+.|+.+|..|.+ |+.-...+... ........+.++.++.||+... +.
T Consensus 73 Piv~~g~vyv~t~----------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-~g--- 138 (573)
T d1kb0a2 73 PVVVDGIMYVSAS----------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-DG--- 138 (573)
T ss_dssp CEEETTEEEEECG----------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-TS---
T ss_pred CEEECCEEEEECC----------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-cc---
Confidence 3678999998654 3568999998864 87543221100 0111222345667888776532 22
Q ss_pred CcccCCCCCceeeeEEEEeCCCC--eEEEeecCCCCCCCceeeEEEEECCeEEEecceeccccCccccccccCCcEEEEE
Q 006384 260 TDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (647)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~--~W~~v~~~g~~P~~R~~~s~~~~~~~iyifGG~~~~~~~~~~~~~~~~ndl~~yd 337 (647)
.++++|..+. .|+.....+.........+.+++++.+||-+.... ..+...|..||
T Consensus 139 -------------~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~---------~~~~G~v~a~D 196 (573)
T d1kb0a2 139 -------------RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE---------YGVRGYITAYD 196 (573)
T ss_dssp -------------EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT---------TCCBCEEEEEE
T ss_pred -------------ceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeecccc---------ccccceEEEEe
Confidence 3788887655 57764322111111122334566777766432211 22346799999
Q ss_pred CCCCc--EEEeEe
Q 006384 338 LDNHR--WYPLEL 348 (647)
Q Consensus 338 ~~t~~--W~~l~~ 348 (647)
..|.+ |+.-..
T Consensus 197 ~~TG~~~W~~~t~ 209 (573)
T d1kb0a2 197 AETGERKWRWFSV 209 (573)
T ss_dssp TTTCCEEEEEESS
T ss_pred cCCccceeeeeec
Confidence 99875 765443
|
| >d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=81.49 E-value=7.4 Score=34.75 Aligned_cols=102 Identities=19% Similarity=0.447 Sum_probs=53.7
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEE--EecCC--CCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccC
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK--VISSP--NSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYK 156 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~--~l~s~--~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~ 156 (647)
++++|+|-|. .+|+++.....|. .+... .+|. .--++...++++|+|-| +
T Consensus 19 ~G~~y~Fkg~-----------~~wr~~~~~~~~~p~~I~~~W~~lp~--~IDAA~~~~~~~yfFkG-------------~ 72 (210)
T d1hxna_ 19 HGATYVFSGS-----------HYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQD-------------T 72 (210)
T ss_dssp TSCEEEEETT-----------EEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEET-------------T
T ss_pred CCCEEEEECC-----------EEEEEcCCCCCCCcccHHHhcCCCCc--ccceEEEeCCeEEEEec-------------C
Confidence 6899999884 3455544433332 12111 1222 22344556889999987 4
Q ss_pred cEEEEECCCCc-E-----EEcc-cCCCCCC-c-cee-EEEEE--CCEEEEEecccCCCCceeeeCcEEEEEcCCC
Q 006384 157 DFWMLDLKTNQ-W-----EQLN-LKGCPSP-R-SGH-RMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (647)
Q Consensus 157 dv~~yD~~t~~-W-----~~~~-~~~~P~~-R-~~h-~~~~~--~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~ 219 (647)
.+|+|...+.. - ..+. ..+.|.. . .+- ++.++ ++++|+|-| +..|+||..+.
T Consensus 73 ~y~~y~~~~~~~~~~GyPk~i~~~~g~p~~~~~~~IDAA~~~~~~gk~yffkG-----------~~y~ryd~~~~ 136 (210)
T d1hxna_ 73 KVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-----------RRLWWLDLKSG 136 (210)
T ss_dssp EEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-----------TEEEEEEGGGG
T ss_pred EEEEEEcCCCcCccCCCCcChhhccCCCCCCCCCcEeEEEEeCCCCEEEEEEC-----------CEEEEEcCCcC
Confidence 68888654321 1 1221 1112211 0 111 33333 589999987 35789998753
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.02 E-value=17 Score=31.70 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=41.3
Q ss_pred CCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEECCEEEEEeCCcCCCCCccccccCcEEE
Q 006384 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (647)
Q Consensus 81 ~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~~~~iyv~GG~~~~~~~~~~~~~~dv~~ 160 (647)
++.+++.|+. + ..+.+||+.+.+-...-.. ....-.++.+++.+++.||.. ..+.+
T Consensus 24 d~~~l~sgs~--D-------g~i~vWd~~~~~~~~~l~~----H~~~V~~v~~~~~~l~s~s~D-----------~~i~~ 79 (293)
T d1p22a2 24 DDQKIVSGLR--D-------NTIKIWDKNTLECKRILTG----HTGSVLCLQYDERVIITGSSD-----------STVRV 79 (293)
T ss_dssp CSSEEEEEES--S-------SCEEEEESSSCCEEEEECC----CSSCEEEEECCSSEEEEEETT-----------SCEEE
T ss_pred cCCEEEEEeC--C-------CeEEEEECCCCcEEEEEec----CCCCEeeeecccceeeccccc-----------ccccc
Confidence 5677888873 3 2577889887765433211 111223344567777777753 35778
Q ss_pred EECCCCcEEEccc
Q 006384 161 LDLKTNQWEQLNL 173 (647)
Q Consensus 161 yD~~t~~W~~~~~ 173 (647)
+++.++.......
T Consensus 80 ~~~~~~~~~~~~~ 92 (293)
T d1p22a2 80 WDVNTGEMLNTLI 92 (293)
T ss_dssp EESSSCCEEEEEC
T ss_pred ccccccccccccc
Confidence 8888877655543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=80.22 E-value=22 Score=32.60 Aligned_cols=119 Identities=11% Similarity=0.045 Sum_probs=63.4
Q ss_pred CCCCcceEEEEeccCCCEEEEEcCeecCCCcceeeCcEEEEECCCCeEEEecCCCCCCCcceeEEEEE-CCEEEEEeCCc
Q 006384 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEF 144 (647)
Q Consensus 66 P~~R~~~s~~~~~~~~~~lyv~GG~~~~g~~~~~~ndl~~yd~~~~~W~~l~s~~~P~~R~~ha~v~~-~~~iyv~GG~~ 144 (647)
|.+.+-..+++.| ++.||+.... -+.+|++++........... ..-++++.- ++.+|+.+-..
T Consensus 25 p~~~~~e~iAv~p--dG~l~vt~~~---------~~~I~~i~p~g~~~~~~~~~-----~~~~gla~~~dG~l~v~~~~~ 88 (302)
T d2p4oa1 25 PVNTFLENLASAP--DGTIFVTNHE---------VGEIVSITPDGNQQIHATVE-----GKVSGLAFTSNGDLVATGWNA 88 (302)
T ss_dssp CTTCCEEEEEECT--TSCEEEEETT---------TTEEEEECTTCCEEEEEECS-----SEEEEEEECTTSCEEEEEECT
T ss_pred CCCCCcCCEEECC--CCCEEEEeCC---------CCEEEEEeCCCCEEEEEcCC-----CCcceEEEcCCCCeEEEecCC
Confidence 3344445677776 7889887652 24789999886643332221 122233322 56788876321
Q ss_pred CCCCCccccccCcEEEEECCCCcEEEcccCCCCCCcceeEEEEE-CCEEEEEecccCCCCceeeeCcEEEEEcCCCc
Q 006384 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (647)
Q Consensus 145 ~~~~~~~~~~~~dv~~yD~~t~~W~~~~~~~~P~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~dv~~yD~~t~~ 220 (647)
. .-..+.++.....-..+.. .+.....+.++.. ++.+|+.-.. ...++.+|+.+..
T Consensus 89 ~---------~~~~~~~~~~~~~~~~~~~--~~~~~~~n~i~~~~~g~~~v~~~~---------~~~i~~~~~~~~~ 145 (302)
T d2p4oa1 89 D---------SIPVVSLVKSDGTVETLLT--LPDAIFLNGITPLSDTQYLTADSY---------RGAIWLIDVVQPS 145 (302)
T ss_dssp T---------SCEEEEEECTTSCEEEEEE--CTTCSCEEEEEESSSSEEEEEETT---------TTEEEEEETTTTE
T ss_pred c---------eEEEEEecccccceeeccc--cCCccccceeEEccCCCEEeeccc---------cccceeeeccCCc
Confidence 1 1123334444455555444 3334444445443 6677764321 3567888887654
|