Citrus Sinensis ID: 006391

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------
MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELSRGGSARNKLNMETEINLDGHRPRVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANPALKNESATVVVHSKFSDVSSSNGYYEDVEVQEQFYDAIAADSSSSEDEDSDDSNDPDKKDKKVKLKNVSWAIASLALKRTSVPDANKEFDCSVPPITIDPSQFRGSLHKAKDETDSNCWTSPGGKGFMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNLVVDLAILIEAKEEEELPEYILGTVQLNRVRLDAAVPLEV
cEEEEcccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEcccccccEEEEEEEEEcccHHHHHHHHHHccccccccccccccEEEEEEEEcccEEEEEEEEcccccccccccccEEEEEEEEEccccEEEEEEEcccccccccccccccEEEEcEEEEEEEccccccccccEEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHcHHccccccccccccccEEEEcccccccccccccccHHHHHHHHccccccccccccccccccccccccccHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEccccccccccccccccccEEEEEEEEEEcccccccccccccccHHcccccccEEEEEEEEcccccccEEEEEEEcccccccHHHHHHHccccccccccEEEEEEEEccccHHHHHHccccccccccEEEEEEEccccEEEEEEEcccHHHHHHHHHHHHccccEEEEEEEEEEEEccccccccccccEEEEccccccccccccc
cEEEccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHEEEcccccccHccccHcccccccccccccccccccccccccEEEEEcccEEEEHHHHccccccccEEEEEEEEcccHHHHHHHHHcccccccEEEEcEccccEEEEEEccccEEEEEEccccccccccccccEEEEEEEEEcccccEEEEEEccccccccccccEEEEEEccccEEEEccccccccccccEEEEEEEEEcccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHcccccccHcccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEHHccccccHHHHHccccccHHHHccccccEEEEEEEEcccccccEEEEEEEEcccccccHHHHHHccccHHHHHHHHHHcccccccHHHHHHHcccccEEEccccEEEEEccccEEEEEEEccHHHHHHHHHHHHHHHHHHHEEHHHHHEHcccHHHccHHEEEEEEEccccHHccEEEcc
mrlynrldeskkgeiACATAGEARKWMEAFDQAKQQAEVELsrggsarnklnmeteinldghrprvRRYAHGLRKLIRighgpetllrqssdlggsvrgegffegdigdaiEAHEWKCVRTLNgvrifedvadsksgrgVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTgdlelvdsydghydvvygtydpkyltrwqskrdfvfsrqwfrgqdgtytilqfpavhkkrppksgyrrtkinpstweirslnlpmgsngaKCLVTQMLEIhssgwcrwkknsstkfekTTHFALLSQVAGLKeyiganpalknesaTVVVHSKfsdvsssngyyedveVQEQFYDAiaadssssededsddsndpdkkdkkvkLKNVSWAIASLALkrtsvpdankefdcsvppitidpsqfrgslhkakdetdsncwtspggkgfmirgktylkdnakvmggdplLKLIAVDWfkvdkaadrvalhpkclvqseagkklPFILVINlqvpgkpnySLVLYYAserpvnknsllgkfvdgtdmfRDARFKLIPSIAEGYWMVKRAVGTKACLLGKAVtcrylrqdnfleidvdigsssVARSVIGLVLGHVTNLVVDLAILIEakeeeelpeyiLGTVQLNRvrldaavplev
mrlynrldeskkgeiaCATAGEARKWMEAFDQAKQQAEVElsrggsarnklnmeteinldghrprVRRYAHGLRKLIrighgpetllrqssDLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFedvadsksgrgVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDgtytilqfpavhkkrppksgyrrtkinpstweirslnlpmGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANPALKNESATVVVHSKFSDVSSSNGYYEDVEVQEQFYDAIAAdssssededsddsndpdkkdkkvklknVSWAIASLalkrtsvpdanKEFDCSVPPITIDPSQFRGSLhkakdetdsncwtspggkgfMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKClvqseagkkLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNLVVDLAILIEAkeeeelpeyilgtvqlnrvrldaavplev
MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELSRGGSARNKLNMETEINLDGHRPRVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANPALKNESATVVVHSKFSDVSSSNGYYEDVEVQEQFYDAIAAdssssededsddsndpdkkdkkvklknvsWAIASLALKRTSVPDANKEFDCSVPPITIDPSQFRGSLHKAKDETDSNCWTSPGGKGFMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNLVVDlailieakeeeelpeyilGTVQLNRVRLDAAVPLEV
****************************************************************RVRRYAHGLRKLIRIGHGPETLLRQ**DLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVH*************INPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANPALKNESATVVVHSKFSDVSSSNGYYEDVEVQEQFYDAI**************************LKNVSWAIASLALKRTSV******FDCSVPPIT********************CWTSPGGKGFMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNLVVDLAILI*******************************
MRLYNR*DESKKGEIACATAGEARKWMEAFDQ******************************************************************************IEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLN******GA*CLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANPAL*********************************************************************************************ITIDPSQFRGSLHKAKDETDSNCWTSPGGKGFMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHP**LV**EAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNLVVDLAILIEAKEEEELPEYILGTVQLNRVRLDAAVPLE*
MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELSRGGSARNKLNMETEINLDGHRPRVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAV**********RRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANPALKNESATVVVHSKFSDVSSSNGYYEDVEVQEQFYDAIA***********************VKLKNVSWAIASLALKRTSVPDANKEFDCSVPPITIDPSQFRGSLHKAKDETDSNCWTSPGGKGFMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNLVVDLAILIEAKEEEELPEYILGTVQLNRVRLDAAVPLEV
MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELS*******KLN*ETEINLDGHRPRVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANP*************************************************************************************************IDPSQFRGSLHKAKDETDSNCWTSPGGKGFMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNLVVDLAILIEAKEEEELPEYILGTVQLNRVRLDAAVPLEV
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MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELSRGGSARNKLNMETEINLDGHRPRVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANPALKNESATVVVHSKFSDVSSSNGYYEDVEVQEQFYDAIAADSSSSEDEDSDDSNDPDKKDKKVKLKNVSWAIASLALKRTSVPDANKEFDCSVPPITIDPSQFRGSLHKAKDETDSNCWTSPGGKGFMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNLVVDLAILIEAKEEEELPEYILGTVQLNRVRLDAAVPLEV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query647
255565087 789 lipid binding protein, putative [Ricinus 0.996 0.817 0.806 0.0
225463000 756 PREDICTED: uncharacterized protein LOC10 0.998 0.854 0.761 0.0
224144013 790 predicted protein [Populus trichocarpa] 0.996 0.816 0.759 0.0
356548461747 PREDICTED: uncharacterized protein LOC10 0.990 0.858 0.754 0.0
356548463746 PREDICTED: uncharacterized protein LOC10 0.989 0.857 0.755 0.0
356562888743 PREDICTED: uncharacterized protein LOC10 0.990 0.862 0.746 0.0
356562890742 PREDICTED: uncharacterized protein LOC10 0.989 0.862 0.748 0.0
296084587 762 unnamed protein product [Vitis vinifera] 0.998 0.847 0.756 0.0
186526659 778 uncharacterized protein [Arabidopsis tha 0.996 0.829 0.742 0.0
18421431 778 uncharacterized protein [Arabidopsis tha 0.995 0.827 0.742 0.0
>gi|255565087|ref|XP_002523536.1| lipid binding protein, putative [Ricinus communis] gi|223537243|gb|EEF38875.1| lipid binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1059 bits (2739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/647 (80%), Positives = 583/647 (90%), Gaps = 2/647 (0%)

Query: 1   MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELSRGGSARNKLNMETEINLD 60
           +R Y+RLDE+KKGEIACATAGEAR+WMEAFD AKQQAE ELSRG S RNKLNMETEINL+
Sbjct: 145 LRFYSRLDETKKGEIACATAGEAREWMEAFDHAKQQAEYELSRGSSTRNKLNMETEINLE 204

Query: 61  GHRPRVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDIGDAIEAHEWKCVR 120
           GHRPR+RRYAHGL+KLIRIG GPE LLRQ SDL  + R + ++EG++GDAIEAHEWKCVR
Sbjct: 205 GHRPRIRRYAHGLKKLIRIGQGPERLLRQYSDLHSNARSDRYYEGEVGDAIEAHEWKCVR 264

Query: 121 TLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELV 180
           T+NGVRIFEDV+DSK+G+G+LVKAVGVIDASADTVFEV+LN++RHQRYEWD LTGDLEL+
Sbjct: 265 TINGVRIFEDVSDSKNGKGILVKAVGVIDASADTVFEVILNVDRHQRYEWDTLTGDLELL 324

Query: 181 DSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGY 240
           DSYDGHYDVVYGT+DPKYLTRWQSKRDFVFSRQWF GQDGTYTILQFPAV KKRPP+SGY
Sbjct: 325 DSYDGHYDVVYGTFDPKYLTRWQSKRDFVFSRQWFNGQDGTYTILQFPAVLKKRPPRSGY 384

Query: 241 RRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLS 300
           RRTKINPSTWEIR+LN PMGS   +CL+TQ LEIH +GW RWK N  +KFEKT  +ALLS
Sbjct: 385 RRTKINPSTWEIRNLNAPMGSTAMRCLLTQTLEIHHAGWLRWKSNRCSKFEKTIPYALLS 444

Query: 301 QVAGLKEYIGANPALKNESATVVVHSKFSDVSSSNGYYEDVEVQEQFYDAIAADSSSSED 360
           QVAGLKEYIGANPALK++ AT VVHSK S+ S+S+  YED EV+++FYDAI+ADSSSSE+
Sbjct: 445 QVAGLKEYIGANPALKSKYATKVVHSKISEDSTSSSEYEDAEVKDEFYDAISADSSSSEE 504

Query: 361 EDSDDSNDPDKKDKKVKLKNVSWAIASLALKRTSVPDANKEFDCSVPPITIDPSQFRGSL 420
            +      P  ++KKVKLKNVSWAIAS AL+RTS  DANKE D SV PI  D SQF GSL
Sbjct: 505 SED--EGQPANEEKKVKLKNVSWAIASFALRRTSALDANKELDPSVTPINFDLSQFHGSL 562

Query: 421 HKAKDETDSNCWTSPGGKGFMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVAL 480
            K KDE DS+CW+SP G GFMIRGKTYLKDN+KVMGGDPLLKLIAVDWFKVD   DRV+L
Sbjct: 563 PKGKDEKDSSCWSSPNGNGFMIRGKTYLKDNSKVMGGDPLLKLIAVDWFKVDSPMDRVSL 622

Query: 481 HPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRD 540
           HPKCLVQ+EAGKKLPFILVINLQ+P KPNYS+VLYYA++RPVNK+SLLGKF+DGTDMFRD
Sbjct: 623 HPKCLVQTEAGKKLPFILVINLQIPAKPNYSMVLYYAADRPVNKSSLLGKFIDGTDMFRD 682

Query: 541 ARFKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEIDVDIGSSSVARSVIGL 600
           +RFKLIPSI EGYWMVKRAVGTKACLLGKAVTC+YLRQDNFLEIDVDIGSSSVARSVIGL
Sbjct: 683 SRFKLIPSITEGYWMVKRAVGTKACLLGKAVTCKYLRQDNFLEIDVDIGSSSVARSVIGL 742

Query: 601 VLGHVTNLVVDLAILIEAKEEEELPEYILGTVQLNRVRLDAAVPLEV 647
           VLG+VT+LVVDLAILIEAKEEEELPEYILGTV+LNRVRLD+AVPLEV
Sbjct: 743 VLGYVTSLVVDLAILIEAKEEEELPEYILGTVRLNRVRLDSAVPLEV 789

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225463000|ref|XP_002264572.1| PREDICTED: uncharacterized protein LOC100260203 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224144013|ref|XP_002325156.1| predicted protein [Populus trichocarpa] gi|222866590|gb|EEF03721.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356548461|ref|XP_003542620.1| PREDICTED: uncharacterized protein LOC100801191 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356548463|ref|XP_003542621.1| PREDICTED: uncharacterized protein LOC100801191 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356562888|ref|XP_003549700.1| PREDICTED: uncharacterized protein LOC100780025 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356562890|ref|XP_003549701.1| PREDICTED: uncharacterized protein LOC100780025 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|296084587|emb|CBI25608.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|186526659|ref|NP_001119310.1| uncharacterized protein [Arabidopsis thaliana] gi|227202528|dbj|BAH56737.1| AT5G35180 [Arabidopsis thaliana] gi|332006556|gb|AED93939.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18421431|ref|NP_568526.1| uncharacterized protein [Arabidopsis thaliana] gi|16930705|gb|AAL32018.1|AF436836_1 AT5g35180/T25C13_60 [Arabidopsis thaliana] gi|110742231|dbj|BAE99042.1| hypothetical protein [Arabidopsis thaliana] gi|332006555|gb|AED93938.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query647
TAIR|locus:2182417811 AT5G35180 [Arabidopsis thalian 0.616 0.491 0.639 3.8e-238
TAIR|locus:2117134724 EDR2 "ENHANCED DISEASE RESISTA 0.384 0.343 0.418 4.3e-73
TAIR|locus:2057547737 AT2G28320 [Arabidopsis thalian 0.398 0.350 0.391 2.2e-71
TAIR|locus:2163548719 AT5G45560 [Arabidopsis thalian 0.383 0.344 0.418 1.3e-70
TAIR|locus:2102465733 AT3G54800 [Arabidopsis thalian 0.352 0.311 0.393 2.1e-62
TAIR|locus:2198866313 AT1G06050 "AT1G06050" [Arabido 0.340 0.702 0.360 2.3e-39
TAIR|locus:2183705302 AT5G10750 "AT5G10750" [Arabido 0.366 0.784 0.380 2.9e-39
TAIR|locus:2179245286 AT5G25010 "AT5G25010" [Arabido 0.333 0.755 0.403 1.8e-37
TAIR|locus:2149428294 AT5G24990 "AT5G24990" [Arabido 0.336 0.741 0.393 3.6e-35
TAIR|locus:2179255269 AT5G25020 "AT5G25020" [Arabido 0.122 0.293 0.432 2.8e-22
TAIR|locus:2182417 AT5G35180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1301 (463.0 bits), Expect = 3.8e-238, Sum P(2) = 3.8e-238
 Identities = 257/402 (63%), Positives = 291/402 (72%)

Query:   246 NPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGL 305
             N STWEI+SL     +    CLVT MLEIHS  WC+WK+ S +KFEKT  +ALL QVAGL
Sbjct:   411 NTSTWEIKSLKKRSDAETPSCLVTHMLEIHSKRWCKWKRTSYSKFEKTIPYALLLQVAGL 470

Query:   306 KEYIGANPALKNESATVVVHSKFSDVSSSNGYYEDVEVQEQFYDAI-AAXXXXXXXXXXX 364
             KEYIGANPA K E++  VV SKF DV   NG Y D E++EQFYDA  ++           
Sbjct:   471 KEYIGANPAFKYETSATVVQSKFQDVP--NGEYVDEEMEEQFYDATDSSSGEEDEEESDD 528

Query:   365 XXXXXXXXXXXXXXXXXXWAIASLALKRTSVPDANKEFDCSVPPITIDPSQFRGSLHKAK 424
                               WAIASL+LKR   P A+   D SV P++IDPSQF+GSL K  
Sbjct:   529 DDENQDNKEIKVKLKNVSWAIASLSLKRPKAPGASNVLDASVDPVSIDPSQFQGSLRKGN 588

Query:   425 DETDSNCWTSPGGKGFMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKC 484
              + DSNCW SP G GFMIRGKTYLKDNAKVMGG PLL LI+VDWFKVD A D +ALHPKC
Sbjct:   589 GDKDSNCWNSPSGMGFMIRGKTYLKDNAKVMGGQPLLTLISVDWFKVDSAVDNIALHPKC 648

Query:   485 LVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFK 544
             L+QSE GKKLPFILVINLQVP KPNY LVLYYA++RPVNK S LGKFVDG+D +RDARFK
Sbjct:   649 LIQSEPGKKLPFILVINLQVPAKPNYCLVLYYAADRPVNKTSSLGKFVDGSDSYRDARFK 708

Query:   545 LIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGH 604
             LIPSI +GYWMVKRAVGTKACLLGKAVTC+YLRQDNFLEIDVDIGSS+VARSVIGLVLG+
Sbjct:   709 LIPSIVQGYWMVKRAVGTKACLLGKAVTCKYLRQDNFLEIDVDIGSSAVARSVIGLVLGY 768

Query:   605 VTNLVVDXXXXXXXXXXXXXXXXXXGTVQLNRVRLDAAVPLE 646
             VT+L+VD                  GTV+LNR+ LD+AV  E
Sbjct:   769 VTSLIVDLAILIEGKEESDLPEYILGTVRLNRIELDSAVSFE 810
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0007165 "signal transduction" evidence=ISS
GO:0035091 "phosphatidylinositol binding" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
TAIR|locus:2117134 EDR2 "ENHANCED DISEASE RESISTANCE 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057547 AT2G28320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163548 AT5G45560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102465 AT3G54800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198866 AT1G06050 "AT1G06050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183705 AT5G10750 "AT5G10750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179245 AT5G25010 "AT5G25010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149428 AT5G24990 "AT5G24990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179255 AT5G25020 "AT5G25020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00181023
hypothetical protein (791 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query647
PLN00188719 PLN00188, PLN00188, enhanced disease resistance pr 1e-106
pfam07059215 pfam07059, DUF1336, Protein of unknown function (D 1e-100
cd00177193 cd00177, START, Lipid-binding START domain of mamm 6e-37
smart00234205 smart00234, START, in StAR and phosphatidylcholine 2e-07
pfam01852205 pfam01852, START, START domain 7e-05
cd08867206 cd08867, START_STARD4_5_6-like, Lipid-binding STAR 1e-04
cd08871222 cd08871, START_STARD10-like, Lipid-binding START d 1e-04
cd08868208 cd08868, START_STARD1_3_like, Cholesterol-binding 3e-04
cd08876195 cd08876, START_1, Uncharacterized subgroup of the 7e-04
cd08870209 cd08870, START_STARD2_7-like, Lipid-binding START 0.003
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information 
 Score =  338 bits (868), Expect = e-106
 Identities = 189/548 (34%), Positives = 287/548 (52%), Gaps = 57/548 (10%)

Query: 116 WKCVRTLNGVRIFEDVAD--------SKSGRGVLVKAVGVIDASADTVFEVVLNLERHQR 167
           W+ ++  NG+RIFE++ +        S++     +KAVGV++A+ + +FE+V++++   R
Sbjct: 200 WRLLQCQNGLRIFEELLEVDYLPRSCSRA-----MKAVGVVEATCEEIFELVMSMDG-TR 253

Query: 168 YEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQF 227
           +EWD       LV+  DGH  ++Y      +   +   RD  + R W R  DG+Y +L  
Sbjct: 254 FEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFR 313

Query: 228 PAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNG-AKCLVTQMLEIHSSGWCRWKKNS 286
              H+   P+ G+ R  +    + I  L      NG  +  V  +++I   GW       
Sbjct: 314 SREHENCGPQPGFVRAHLESGGFNISPLK---PRNGRPRTQVQHLMQIDLKGW---GVGY 367

Query: 287 STKFEKTTHFALLSQVAGLKEY------IGANPALKNESATVVVHSKFSDVSSSNGYYED 340
              F++     +L+ VAGL+E+       GA P +       V+ +  S  S S+   + 
Sbjct: 368 IPSFQQHCLLQMLNSVAGLREWFSQTDERGAPPRIP------VMVNMAS-ASVSSKKNQK 420

Query: 341 VEVQEQFYDAIAADSSSSE--DEDSDDSND---PDKKDKKVKLKNVSWAIASLALKRTSV 395
            +      D   A S +S   DEDSDD  +   P+ + +    KN               
Sbjct: 421 PQESSPSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPETTKN-------------ET 467

Query: 396 PDANKEFDCSVPPITIDPSQFRGSLHKAKDETDSNCWTSPGGKGFMIRGKTYLKDNAKVM 455
            D   E +   P   ID S F G+L +   +   +CW    G  F +R K +  D +K+ 
Sbjct: 468 KDTAMEEE---PQDKIDLSCFSGNLRRDDRDKARDCWRISDGNNFKVRSKNFCYDKSKIP 524

Query: 456 GGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLY 515
            G  L+ L+AVDWFK  K  D VA    C  Q  A K L F  V+NLQVPG  +YS+V Y
Sbjct: 525 AGKHLMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEKGL-FSFVVNLQVPGSTHYSMVFY 583

Query: 516 YASERPVNKNSLLGKFVDGTDMFRDARFKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRY 575
           + ++  V   SLL +FVDG D FR++R KLIPS+ +G W+V+++VG+  CLLGKAV C Y
Sbjct: 584 FVTKELV-PGSLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNY 642

Query: 576 LRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNLVVDLAILIEAKEEEELPEYILGTVQLN 635
           +R   +LEIDVDIGSS+VA  V+GLV+G +T LVVD+A L++A   EELPE ++G V+++
Sbjct: 643 IRGPKYLEIDVDIGSSTVANGVLGLVIGVITTLVVDMAFLVQANTYEELPERLIGAVRVS 702

Query: 636 RVRLDAAV 643
            V L +A+
Sbjct: 703 HVELSSAI 710

Length = 719
>gnl|CDD|219281 pfam07059, DUF1336, Protein of unknown function (DUF1336) Back     alignment and domain information
>gnl|CDD|176851 cd00177, START, Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>gnl|CDD|214575 smart00234, START, in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>gnl|CDD|216740 pfam01852, START, START domain Back     alignment and domain information
>gnl|CDD|176876 cd08867, START_STARD4_5_6-like, Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins Back     alignment and domain information
>gnl|CDD|176880 cd08871, START_STARD10-like, Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>gnl|CDD|176877 cd08868, START_STARD1_3_like, Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>gnl|CDD|176885 cd08876, START_1, Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>gnl|CDD|176879 cd08870, START_STARD2_7-like, Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 647
PLN00188719 enhanced disease resistance protein (EDR2); Provis 100.0
PF07059227 DUF1336: Protein of unknown function (DUF1336); In 100.0
cd08904204 START_STARD6-like Lipid-binding START domain of ma 100.0
cd08914236 START_STARD15-like Lipid-binding START domain of m 100.0
cd08873235 START_STARD14_15-like Lipid-binding START domain o 100.0
cd08913240 START_STARD14-like Lipid-binding START domain of m 100.0
cd08907205 START_STARD8-like C-terminal lipid-binding START d 100.0
cd08909205 START_STARD13-like C-terminal lipid-binding START 100.0
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 100.0
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 100.0
cd08902202 START_STARD4-like Lipid-binding START domain of ma 100.0
cd08906209 START_STARD3-like Cholesterol-binding START domain 100.0
cd08867206 START_STARD4_5_6-like Lipid-binding START domain o 100.0
cd08903208 START_STARD5-like Lipid-binding START domain of ma 99.98
cd08874205 START_STARD9-like C-terminal START domain of mamma 99.97
cd08871222 START_STARD10-like Lipid-binding START domain of m 99.97
smart00234206 START in StAR and phosphatidylcholine transfer pro 99.97
cd08905209 START_STARD1-like Cholesterol-binding START domain 99.96
cd08908204 START_STARD12-like C-terminal lipid-binding START 99.96
cd08872235 START_STARD11-like Ceramide-binding START domain o 99.96
PF01852206 START: START domain; InterPro: IPR002913 START (St 99.96
cd08911207 START_STARD7-like Lipid-binding START domain of ma 99.95
cd00177193 START Lipid-binding START domain of mammalian STAR 99.94
cd08910207 START_STARD2-like Lipid-binding START domain of ma 99.94
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 99.93
cd08870209 START_STARD2_7-like Lipid-binding START domain of 99.92
cd08877215 START_2 Uncharacterized subgroup of the steroidoge 99.89
KOG2761219 consensus START domain-containing proteins involve 99.84
cd08875229 START_ArGLABRA2_like C-terminal lipid-binding STAR 99.55
KOG1739611 consensus Serine/threonine protein kinase GPBP [Si 99.5
cd08864208 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand- 99.11
KOG2200674 consensus Tumour suppressor protein p122-RhoGAP/DL 98.09
PF11274184 DUF3074: Protein of unknown function (DUF3074) 98.06
cd07813138 COQ10p_like Coenzyme Q-binding protein COQ10p and 98.01
cd08866144 SRPBCC_11 Ligand-binding SRPBCC domain of an uncha 97.93
cd07819140 SRPBCC_2 Ligand-binding SRPBCC domain of an unchar 97.55
cd05018144 CoxG Carbon monoxide dehydrogenase subunit G (CoxG 97.21
cd08861142 OtcD1_ARO-CYC_like N-terminal and C-terminal aroma 97.03
cd08860146 TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom 96.89
cd07817139 SRPBCC_8 Ligand-binding SRPBCC domain of an unchar 96.83
PF10604139 Polyketide_cyc2: Polyketide cyclase / dehydrase an 96.62
cd07821140 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), 96.61
PRK10724158 hypothetical protein; Provisional 95.98
PF03364130 Polyketide_cyc: Polyketide cyclase / dehydrase and 95.88
cd07812141 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR 94.69
KOG3845241 consensus MLN, STAR and related lipid-binding prot 94.42
cd08865140 SRPBCC_10 Ligand-binding SRPBCC domain of an uncha 94.41
cd08862138 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of 92.66
cd07823146 SRPBCC_5 Ligand-binding SRPBCC domain of an unchar 92.59
cd07824146 SRPBCC_6 Ligand-binding SRPBCC domain of an unchar 91.23
cd07822141 SRPBCC_4 Ligand-binding SRPBCC domain of an unchar 90.94
cd07818150 SRPBCC_1 Ligand-binding SRPBCC domain of an unchar 90.38
cd0122099 PH_CDEP Chondrocyte-derived ezrin-like domain cont 87.69
cd0090099 PH-like Pleckstrin homology-like domain. Pleckstri 84.57
cd07825144 SRPBCC_7 Ligand-binding SRPBCC domain of an unchar 82.81
PF06240140 COXG: Carbon monoxide dehydrogenase subunit G (Cox 82.5
cd07816148 Bet_v1-like Ligand-binding bet_v_1 domain of major 82.4
>PLN00188 enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information 
Probab=100.00  E-value=1e-156  Score=1306.53  Aligned_cols=606  Identities=32%  Similarity=0.563  Sum_probs=530.9

Q ss_pred             CeeecCCCCCcceeecccCHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCCccccccccc-------ccc
Q 006391            1 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELSRGG-------------SARNKLNMETEI-------NLD   60 (647)
Q Consensus         1 ~~~yn~~~~~~~~~~~~~~~eea~~w~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-------~~~   60 (647)
                      |+|||+++|++||+|||+|+|||++||+||++|++|+.......+             .+++.++++++.       +.+
T Consensus        76 l~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  155 (719)
T PLN00188         76 LSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEED  155 (719)
T ss_pred             EEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccc
Confidence            799999999999999999999999999999999998744333222             223334444432       234


Q ss_pred             CCCcccccccccceEEEEecCCCCCcccCCCCCCCCccCCCcCCCcccccccCCCCEEEEEeCCeEEEEEecCCC---CC
Q 006391           61 GHRPRVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSK---SG  137 (647)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~~~~ls~~n~~~~~~a~sgW~l~~~kngVrVf~~~~~~~---~~  137 (647)
                      ++++        +.|++||||||+.+.++||.+...   +++|+++++++++.+.|++++|+||+|||++..+..   ..
T Consensus       156 ~~~~--------~~r~~tig~gp~~s~~~~t~~~~~---~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~~  224 (719)
T PLN00188        156 THRD--------LLRRTTIGNGPPDSVLDWTKEFDS---ELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRS  224 (719)
T ss_pred             cCcc--------cceeeeccCCCcchhcccccccCc---cccccCCCccccccCCeEEEEeeccceeehhhhcccccccc
Confidence            4554        778889999999999999996666   788999999999999999999999999999988764   56


Q ss_pred             cccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEc
Q 006391          138 RGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG  217 (647)
Q Consensus       138 ~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~  217 (647)
                      ++++||++|+|+++|++||+.||+++. .|.+||.++.++++||+||+||||+|.++++.|+|+.++|||||++|+|+++
T Consensus       225 ~~~~mKavGVV~aspE~Ifd~Vm~~~~-~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~  303 (719)
T PLN00188        225 CSRAMKAVGVVEATCEEIFELVMSMDG-TRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN  303 (719)
T ss_pred             CCceeEEEEEecCCHHHHHHHHhccCc-ccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEc
Confidence            679999999999999999999999987 7999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCccccccCcccceehhhHHH
Q 006391          218 QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFA  297 (647)
Q Consensus       218 ~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~~w~p~~~~~~~~~~~~~  297 (647)
                      +||+|+|+++||+||+|||++|||||++++|||+|.|++++  +++++|+|+|++|+|+|||+   ++|+++++++++++
T Consensus       304 eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~--~g~~r~lv~~~lqtDlkGW~---~~y~~s~~~~~~l~  378 (719)
T PLN00188        304 DDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPR--NGRPRTQVQHLMQIDLKGWG---VGYIPSFQQHCLLQ  378 (719)
T ss_pred             CCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCC--CCCCceEEEEEEEEccCccc---cccCccccccchHH
Confidence            99999999999999999999999999999999999999873  45689999999999999999   89999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCccceeeeccccccCCCCCC--------ccchhhhhhhhcccccCCCCCCCCCCCCCCC-
Q 006391          298 LLSQVAGLKEYIGANPALKNESATVVVHSKFSDVSSSNGY--------YEDVEVQEQFYDAIAADSSSSEDEDSDDSND-  368 (647)
Q Consensus       298 mL~~va~LRe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-  368 (647)
                      ||++||+|||||+++++.++.+|++++.+|+....+++.+        ..+.+..++|+++...       +++|+|++ 
T Consensus       379 mL~~VAgLrE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~dE~~  451 (719)
T PLN00188        379 MLNSVAGLREWFSQTDERGAPPRIPVMVNMASASVSSKKNQKPQESSPSLDQTNAASRNSVMMD-------EDSDDDEEF  451 (719)
T ss_pred             HHHHHHHHHHHHhcCcccCccccceeecccccccccccccccccccccccccccccchhhhhhc-------cccccchhc
Confidence            9999999999999999999999999999887653222111        1122334566655433       33333332 


Q ss_pred             CCchhhhhhhccchhhhhhhhhcccCCCCCCcccCCCCCCcccCCCccccccccCCCCCCCCcccCCCCCceeecCCCcc
Q 006391          369 PDKKDKKVKLKNVSWAIASLALKRTSVPDANKEFDCSVPPITIDPSQFRGSLHKAKDETDSNCWTSPGGKGFMIRGKTYL  448 (647)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~Ws~p~~~~F~VRg~~Yl  448 (647)
                      ++++..++..+.++             .. ......+.+++.+|+++|+|+|++++++++.+||++|++++|+|||+|||
T Consensus       452 ~~~e~~~~~~~~k~-------------~~-~~~~~~~~~~~~~d~~~~~g~l~~~~~~~~~ncWs~Pd~~~F~VRG~~Yl  517 (719)
T PLN00188        452 QIPESEQEPETTKN-------------ET-KDTAMEEEPQDKIDLSCFSGNLRRDDRDKARDCWRISDGNNFKVRSKNFC  517 (719)
T ss_pred             cCCCcccccccccc-------------cc-cccccccCCcccccccccccccccCCCCCCCCCccCCCCcceEEcCCCcc
Confidence            33332222111111             00 11223567899999999999999999999999999999999999999999


Q ss_pred             ccCccccCCCCcceEeEEeEeeeCCcccccccCCCcccccccCCCCCeEEEEEEEcCCCCCceEEEEEeecCCCCchhhH
Q 006391          449 KDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLL  528 (647)
Q Consensus       449 ~dk~Kvpa~~~l~~lv~vD~f~s~~~~~~ia~~~~~~~~~~~~~~~P~~~ivN~qvP~~p~~s~v~Yf~~~~~~~~~~ll  528 (647)
                      +||+|+||+++||+|+|||||++++|+||||+||++++|.+.++ .||+|||||||||+|+||+|+||++ +++.+++||
T Consensus       518 ~Dk~KvPAg~~l~~lvgvDwfks~~ridhVa~r~~~~vq~a~~k-~~F~fiVNlQvPg~~~ys~V~Yf~~-~~l~~~sLl  595 (719)
T PLN00188        518 YDKSKIPAGKHLMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEK-GLFSFVVNLQVPGSTHYSMVFYFVT-KELVPGSLL  595 (719)
T ss_pred             cCCccccCCccceeeEEEEEEcCCchhhHhhcCCCchhhhhccc-CCcEEEEEEEccCCCceEEEEEEec-cCCCCchHH
Confidence            99999999999999999999999999999999999999986444 5899999999999999999999998 668899999


Q ss_pred             hhhhcCCccccccceEEeeeecccceeeeeccCCceeEecceeeeEEeecCCeEEEEEEecChHHHHHHHHHhhcccceE
Q 006391          529 GKFVDGTDMFRDARFKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNL  608 (647)
Q Consensus       529 ~rf~~gdd~fRn~RfKlIp~v~~g~wivk~avg~kP~L~gk~~~~~y~~g~~ylEiDvDi~ss~vAr~~~~l~~g~~~~l  608 (647)
                      +||++|||+|||+||||||+|++|||||||+||+|||||||+++|+||+|+||||||||||||+||++|++||+||+++|
T Consensus       596 ~rF~~GDD~fRnsRfKLIP~Iv~GpWiVk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~ss~va~~v~~l~~g~~~~l  675 (719)
T PLN00188        596 QRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITTL  675 (719)
T ss_pred             HHhccCchhHhhCceEEeccccCCceEEEeccCCcceEeeeecceeEecCCCeEEEEEeeccHHHHHHHHHHHHhhhhhe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeecCCccccccceeceEEeCccCCCCCccCC
Q 006391          609 VVDLAILIEAKEEEELPEYILGTVQLNRVRLDAAVPLE  646 (647)
Q Consensus       609 vvD~gf~Ieg~~~eELPE~lLG~~Rl~~~d~~~A~~~~  646 (647)
                      ||||||+|||+++|||||+|||||||++||+++|+..+
T Consensus       676 vvD~af~ie~~~~eELPE~llG~~Rl~~i~~~~A~~~~  713 (719)
T PLN00188        676 VVDMAFLVQANTYEELPERLIGAVRVSHVELSSAIVPK  713 (719)
T ss_pred             EEEEEEEEecCChhhCchhheeeEEecccchhhccccC
Confidence            99999999999999999999999999999999998764

>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins Back     alignment and domain information
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins Back     alignment and domain information
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins Back     alignment and domain information
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins Back     alignment and domain information
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins Back     alignment and domain information
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains Back     alignment and domain information
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] Back     alignment and domain information
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism] Back     alignment and domain information
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms] Back     alignment and domain information
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily Back     alignment and domain information
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms] Back     alignment and domain information
>PF11274 DUF3074: Protein of unknown function (DUF3074) Back     alignment and domain information
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins Back     alignment and domain information
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) Back     alignment and domain information
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains Back     alignment and domain information
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains Back     alignment and domain information
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis Back     alignment and domain information
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins Back     alignment and domain information
>PRK10724 hypothetical protein; Provisional Back     alignment and domain information
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp Back     alignment and domain information
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily Back     alignment and domain information
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu Back     alignment and domain information
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain Back     alignment and domain information
>cd00900 PH-like Pleckstrin homology-like domain Back     alignment and domain information
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster Back     alignment and domain information
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query647
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 8e-31
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 7e-28
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 8e-28
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 2e-26
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 1e-24
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 1e-23
3qsz_A189 STAR-related lipid transfer protein; structural ge 2e-22
2pso_A237 STAR-related lipid transfer protein 13; alpha and 7e-22
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 2e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Length = 231 Back     alignment and structure
 Score =  119 bits (300), Expect = 8e-31
 Identities = 41/181 (22%), Positives = 63/181 (34%), Gaps = 7/181 (3%)

Query: 99  GEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEV 158
            E   E  +    +   WK  R  NGV +      S    G L +  G++  + + V++ 
Sbjct: 28  SEAVAEKMLQYRRDTAGWKICREGNGVSVS--WRPSVEFPGNLYRGEGIVYGTLEEVWDC 85

Query: 159 VLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ 218
           V       R +WD      E++ S      V   +  P    +  S RDFV      R +
Sbjct: 86  VKPAVGGLRVKWDENVTGFEIIQSITDTLCVSRTST-PSAAMKLISPRDFVDLVLVKRYE 144

Query: 219 DGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSG 278
           DGT +       H   PPK G+ R   +P          P+     K  +        SG
Sbjct: 145 DGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCE----PLPGEPTKTNLVTFFHTDLSG 200

Query: 279 W 279
           +
Sbjct: 201 Y 201
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Length = 221 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Length = 258 Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Length = 229 Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Length = 224 Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Length = 255 Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Length = 189 Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Length = 237 Back     alignment and structure
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Length = 214 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query647
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 100.0
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 100.0
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 100.0
2pso_A237 STAR-related lipid transfer protein 13; alpha and 100.0
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 100.0
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 100.0
3qsz_A189 STAR-related lipid transfer protein; structural ge 99.97
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 99.96
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 99.96
3tl1_A159 WHIE ORF VI, polyketide cyclase; helix-GRIP fold, 96.84
1t17_A148 Conserved hypothetical protein; beta-alpha-beta-BE 96.61
2d4r_A147 Hypothetical protein TTHA0849; start domain, struc 96.6
3tvq_A169 Multifunctional cyclase-dehydratase-3-O-methyl TR 96.59
3tfz_A172 Cyclase; helix-GRIP, BET V1-like superfamily, bios 96.35
2pcs_A162 Conserved protein; structural genomics, unknown fu 95.73
3ggn_A155 Uncharacterized protein DR_A0006; structural genom 95.69
3p9v_A161 Uncharacterized protein; structural genomics, PSI- 95.51
2ns9_A157 Hypothetical protein APE2225; uncharacterized cons 95.01
3f08_A146 Uncharacterized protein Q6HG14; NESG Q6HG14_bachk 94.84
2le1_A151 Uncharacterized protein; structural genomics, nort 92.28
3ijt_A155 SMU.440, putative uncharacterized protein; hypothe 91.4
3p51_A160 Uncharacterized protein; structural genomics, PSI- 89.02
2d9x_A120 Oxysterol binding protein-related protein 11; PH d 86.49
3qwm_A140 Iqsec1, IQ motif and SEC7 domain-containing protei 85.64
2qpv_A156 Uncharacterized protein ATU1531; structural genomi 84.44
1fao_A126 Dual adaptor of phosphotyrosine and 3- phosphoinos 82.38
1e09_A159 PRU AV 1; allergen, major cherry allergen, pathoge 81.2
2da0_A114 130-kDa phosphatidylinositol 4,5-biphosphate- depe 80.83
1tw0_A157 Pathogenesis-related class 10 protein SPE-16; seve 80.27
1u5d_A108 SKAP55, SRC kinase-associated phosphoprotein of 55 80.12
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.1e-39  Score=332.84  Aligned_cols=208  Identities=16%  Similarity=0.192  Sum_probs=177.2

Q ss_pred             CCcccCCCCCCCCccCCCcCCCc--ccccccCCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHc
Q 006391           84 ETLLRQSSDLGGSVRGEGFFEGD--IGDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLN  161 (647)
Q Consensus        84 ~~~~~~w~~~~~~~~~~ls~~n~--~~~~~a~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d  161 (647)
                      ..+|++||++||+   ||||+|+  .+++++++||++..+++||+||+++..    ..+.+|++++|++||++||++|+|
T Consensus        37 ~p~~~~w~~~~~~---~l~~~n~~al~~l~~~~gW~~~~~~~gv~Vy~~~~~----~~l~~k~~~~v~~~~~~v~~~L~D  109 (258)
T 3fo5_A           37 VPLSVPWDPSNQV---YLSYNNVSSLKMLVAKDNWVLSSEISQVRLYTLEDD----KFLSFHMEMVVHVDAAQAFLLLSD  109 (258)
T ss_dssp             SCSEEECCGGGHH---HHHHHHHHHHHHHHTCSCCEEEEEETTEEEEEEECS----SCEEEEEEEEESSCHHHHHHHHHC
T ss_pred             CCcccccCcccce---ecccCCHHHHHhhhccCCCEEEecCCCeEEEEEECC----CceEEEEEEEEeCCHHHHHHHHhC
Confidence            3489999999999   8999996  699999999999999999999998642    246899999999999999999999


Q ss_pred             cCCcccccccCCCCceEEEEeecCceeEEEEEecCCCCCCCCCCCeEEEEEEEEEc-CCC-eEEEEEeeccCCCCCCCCC
Q 006391          162 LERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDG-TYTILQFPAVHKKRPPKSG  239 (647)
Q Consensus       162 ~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~~~~p~~lp~~vs~RDFV~LRswRr~-~dG-sYvIa~~SV~Hp~~Pp~~G  239 (647)
                      ++.  |++||+++.++++||++|++ +++|+...|.. ++++++||||++|+||+. .+| .|+|+.+||.||.+||++|
T Consensus       110 ~~~--R~~WD~~~~~~~vle~id~~-~ivY~~~~p~~-~~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~~Pp~~g  185 (258)
T 3fo5_A          110 LRQ--RPEWDKHYRSVELVQQVDED-DAIYHVTSPAL-GGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHRETPE  185 (258)
T ss_dssp             GGG--GGGTCTTCCEEEEEEEEETT-EEEEEEEECCC-TTCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTTSCCCTT
T ss_pred             chh--HhHhhhhccEEEEEEEcCCC-eEEEEEecCCc-cCCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCCCCCCCC
Confidence            876  99999999999999999999 78887766642 267999999999999874 356 5999999999999999999


Q ss_pred             eeeEEEcceeEEEEecCCCCCCCCCccEEEEEEEEcCCCccccccCcccceehhhHHHHHHHHHHHHHHhhcCC
Q 006391          240 YRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANP  313 (647)
Q Consensus       240 ~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~~~~~~  313 (647)
                      ||||++++|||+|+|+++      +.|+|||+.|+|+ |.+   |.|...+.+ +...+.+...+|++|+..+.
T Consensus       186 ~VR~~~~~sg~~I~P~~~------~~t~VtY~~q~dp-G~l---P~~~~n~~g-~s~~~~~t~~~~~~fl~~~~  248 (258)
T 3fo5_A          186 YRRGETLCSGFCLWREGD------QLTKVSYYNQATP-GVL---NYVTTNVAG-LSSEFYTTFKACEQFLLDNR  248 (258)
T ss_dssp             SEECCCSSEEEEEEEEET------TEEEEEEEESCCG-GGH---HHHHHHHHT-SCCHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEEcCcEEEEEECCC------CCEEEEEEEeeCC-CCC---CceEEeccc-cchHHHHHHHHHHHHHHhcc
Confidence            999999999999999986      6899999999999 557   444433322 22234566778999988653
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Back     alignment and structure
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Back     alignment and structure
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6 Back     alignment and structure
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Back     alignment and structure
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A Back     alignment and structure
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} Back     alignment and structure
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10 Back     alignment and structure
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A Back     alignment and structure
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei} Back     alignment and structure
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10 Back     alignment and structure
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A Back     alignment and structure
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Back     alignment and structure
>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A Back     alignment and structure
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Back     alignment and structure
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens} Back     alignment and structure
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8 Back     alignment and structure
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Back     alignment and structure
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Back     alignment and structure
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Back     alignment and structure
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 647
d2psoa1197 d.129.3.2 (A:908-1104) Star-related lipid transfer 1e-18
d1em2a_214 d.129.3.2 (A:) Lipid transport domain of Mln64 {Hu 4e-15
d1ln1a_203 d.129.3.2 (A:) Phosphatidylcholine transfer protei 7e-13
d1jssa_199 d.129.3.2 (A:) Cholesterol-regulated Start protein 8e-13
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Length = 197 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (204), Expect = 1e-18
 Identities = 36/177 (20%), Positives = 58/177 (32%), Gaps = 17/177 (9%)

Query: 116 WKCVRTLNGVRI-FEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLT 174
           W    + +   + F+ V D    +  L KA   ++A    V   VL     +R+ WD   
Sbjct: 21  WVTCSSTDNTDLAFKKVGDGNPLK--LWKASVEVEAPPSVVLNRVL----RERHLWDEDF 74

Query: 175 GDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKR 234
              ++V++ D   ++     +          RDFV  R W          L   +V  + 
Sbjct: 75  VQWKVVETLDRQTEIYQYVLNSMA---PHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEE 131

Query: 235 PPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC-RWKKNSSTKF 290
               G  R  +  S + I     P GS   K  +T +  I   G    W        
Sbjct: 132 AQLLGGVRAVVMDSQYLIE----PCGSG--KSRLTHICRIDLKGHSPEWYSKGFGHL 182
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Back     information, alignment and structure
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Length = 199 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query647
d2psoa1197 Star-related lipid transfer protein 13 {Human (Hom 99.97
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 99.96
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 99.96
d1ln1a_203 Phosphatidylcholine transfer protein {Human (Homo 99.95
d2d4ra1146 Hypothetical protein TTHA0849 {Thermus thermophilu 97.24
d2rera1155 Multifunctional enzyme TcmN, cyclase/aromatase dom 97.08
d2ns9a1147 Hypothetical protein APE2225 {Aeropyrum pernix [Ta 96.27
d1t17a_148 Hypothetical protein CC1736 {Caulobacter crescentu 96.05
d2pcsa1147 Hypothetical protein GKP20 {Geobacillus kaustophil 95.35
d3cnwa1138 Uncharacterized protein XoxI {Bacillus cereus [Tax 95.16
d2b79a1137 Hypothetical protein SMU440 {Streptococcus mutans 95.02
d2fjla1101 Phosphoinositide phospholipase C, PLC-gamma-1 {Rat 91.11
d2i5fa1104 Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} 85.73
d1omwa2119 G-protein coupled receptor kinase 2 (beta-adrenerg 85.27
d1eaza_103 Tapp1 {Human (Homo sapiens) [TaxId: 9606]} 82.89
d1unqa_118 Rac-alpha serine/threonine kinase {Human (Homo sap 81.56
d1v89a_118 Rho-GTPase-activating protein 25 (KIAA0053) {Human 81.53
d2coca199 FYVE, RhoGEF and PH domain containing protein 3, F 80.99
d1plsa_113 Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} 80.8
d2dyna_111 Dynamin {Human (Homo sapiens) [TaxId: 9606]} 80.71
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.1e-31  Score=256.60  Aligned_cols=178  Identities=19%  Similarity=0.219  Sum_probs=153.4

Q ss_pred             CCCCEEEEEeCCeEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceeEEEE
Q 006391          113 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYG  192 (647)
Q Consensus       113 ~sgW~l~~~kngVrVf~~~~~~~~~~~~~~Ka~~vVdaspe~Vfe~L~d~~~~~R~~WD~~~~~~evVE~iD~~tDIvY~  192 (647)
                      ..||+...+++|++||.+... .++..+++|+++.|+++|+++|..+++    .|++||+++.++++||++|++++|+|+
T Consensus        18 ~~GW~~~~~~~gi~V~~kk~~-~gs~~~~~k~~~~i~a~~~~vl~~~l~----~r~~Wd~~~~~~~~le~~~~~~~i~y~   92 (197)
T d2psoa1          18 FKGWVTCSSTDNTDLAFKKVG-DGNPLKLWKASVEVEAPPSVVLNRVLR----ERHLWDEDFVQWKVVETLDRQTEIYQY   92 (197)
T ss_dssp             CCSCEEECCSSSCEEEEECCC-SSCCCCEEEEEEEESSCHHHHHHHHHH----CGGGTCTTBCCCEEEEEEETTEEEEEE
T ss_pred             CCCceEEecCCCeEEEEEecC-CCCCeEEEEEEEEEcCCHHHHHHHHHH----hHHHHhhhhheEEEEEEcCCCCEEEEE
Confidence            468999999999999665432 245568999999999999999977764    389999999999999999999999999


Q ss_pred             EecCCCCCCCCCCCeEEEEEEEEEc-CCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCccEEEEE
Q 006391          193 TYDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQM  271 (647)
Q Consensus       193 ~~~p~~lp~~vs~RDFV~LRswRr~-~dGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~~~VT~I  271 (647)
                      +++..   +++++||||++|+|++. ++|.|++.++|+.||.+|+ +++|||.++.+||+|+|.++      ++|+|||+
T Consensus        93 ~~~~p---~pvs~RD~v~~~~~~~~~~~~~~~i~~~Sv~~~~~p~-~~~VR~~~~~~~~~i~p~~~------~~t~vt~~  162 (197)
T d2psoa1          93 VLNSM---APHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQL-LGGVRAVVMDSQYLIEPCGS------GKSRLTHI  162 (197)
T ss_dssp             EECCS---SSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCC-CSSEECCEEEEEEEEEECST------TCEEEEEE
T ss_pred             EccCC---CcccceeEEEEEEEEEeCCCCEEEEEEEeccccCCCC-CCcEEEEEEeccEEEEECCC------CcEEEEEE
Confidence            99865   47999999999999985 7899999999999998766 58899999999999999875      68999999


Q ss_pred             EEEcCCCccccccCcccceehhhHHHHHHHHHHHHHHhhc
Q 006391          272 LEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA  311 (647)
Q Consensus       272 ~qvDlkGw~~w~p~~~~~~~~~~~~~mL~~va~LRe~~~~  311 (647)
                      +++||+||+   |.|+.+..+++++   ..+.+||++|+.
T Consensus       163 ~~~Dp~G~i---P~W~~n~~~~~~~---~~~~~lr~~f~~  196 (197)
T d2psoa1         163 CRIDLKGHS---PEWYSKGFGHLCA---AEVARIRNSFQP  196 (197)
T ss_dssp             EEECCSSSC---TTTTTTHHHHHHH---HHHHHHHHTTSC
T ss_pred             EEECCCCcC---chhHHhhhHHHHH---HHHHHHHHhhhC
Confidence            999999999   7777655555544   478889999864
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Back     information, alignment and structure
>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Back     information, alignment and structure
>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure