Citrus Sinensis ID: 006403

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640------
MLVHSNTTLNCGIFGVLHFRNCQFSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLLKR
cEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccEEEEccccccHHHHHHHHHHHHHccccEEEccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccEEEEEccccHHHHHHHcccHHHHHHcccccccccccEEEEcccHHHHHHHHHHHHHHcccEEEEcccccccccccccccccHHHHHcHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccccEEEEccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHccccEEEEcccccccccccHHHcccccccccHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHcc
cEEEcccEEEccccccccccccEEEEEccccEcccccccccccccccccEHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHcccEEEEEccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccEEEEEEEccccHHHHHcccHHHHHHHHcccccccccEEEccccHHHHHHHHHHHHHccccEEEEccccHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHccccccEEEEccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHcccccEEEEcccccccccHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEEEEcccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHccccccccccccccccccccHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHHHcc
mlvhsnttlncgifgvlhfrncqfsvrkkwsftslpaslnihdltgnndlhQMTKGLRYakmssqvkgktvsnALTTeyeenlplsssYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHvsgtkgkgstctFCEAILRECgfrtglftsphlidvrerfringlditeDKFLFYFWECWHLLRenvtedlpmpplfqFLTVLAFKIFVCEQVDVAIIEVglggekdstnvikepvvcGVTSLGMDHMELLGNTLndiafhkagifkpqipaftvpqLSEAMSVLQDRALELMVplevaapldiEKLKRLELSLSGDHQLVNAGLAVSLSecwlrrtgnwekvshndgqgadlpdAFVRGLSTAHLLGRAQIVydislvpnssglfenssgeLIFYLDGAHTAESMEACAKWFSSVvkgsgnsslssmssttktnnmEEVVQRngyighkmektKHANKISKQILLFNCmearhpqvllprlvstcassgthfskalfvpsvstyskvtsgssfiplaisgkdlswQFSLQRLWERIIhgadpvlekssmkesteilppckflyedaplcspaeecfacsavipslplTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLLKR
mlvhsnttlncgifgVLHFRNCQFSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLitrqkrgeqshiagrygklqRMSMYLKILGLEDRIAELKVIhvsgtkgkgstCTFCEAILRECGFRTglftsphlidvrERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGlggekdstnvikEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSsmssttktnnmeeVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGadpvlekssmkeSTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVlvtgslhlvgdvlkllkr
MLVHSNTTLNCGIFGVLHFRNCQFSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFssvvkgsgnsslssmssttktnnmEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLLKR
******TTLNCGIFGVLHFRNCQFSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGL*****************************************************IAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVV****************************YIG*******HANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVL********TEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKL***
****SNTTLNCGIFGVLHFRNCQFSVRKKWSFTSLPASLNIHDLTGNND****************************************ENAMQALSSLITRQKR********RYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKT****KISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSF*PLAISGKDLSWQFSLQRLWERIIHGADP*************************************AVIPSLPLTIKWLRDSV**NPSIRVQVLVTGSLHLVGDVLKLLKR
MLVHSNTTLNCGIFGVLHFRNCQFSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVV*****************NNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLLKR
MLVHSNTTLNCGIFGVLHFRNCQFSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSS********************LSSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVP*********SGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHG***************************************SAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLLKR
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLVHSNTTLNCGIFGVLHFRNCQFSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLLKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query646 2.2.26 [Sep-21-2011]
F4J2K2625 Folylpolyglutamate syntha yes no 0.961 0.993 0.603 0.0
F4K2A1571 Folylpolyglutamate syntha no no 0.781 0.884 0.503 1e-145
Q8W035492 Folylpolyglutamate syntha no no 0.752 0.987 0.471 1e-137
Q05932587 Folylpolyglutamate syntha yes no 0.794 0.873 0.338 7e-80
A6H751585 Folylpolyglutamate syntha yes no 0.753 0.832 0.338 7e-78
Q924L9587 Folylpolyglutamate syntha yes no 0.764 0.841 0.339 1e-74
P48760587 Folylpolyglutamate syntha yes no 0.597 0.657 0.383 2e-73
Q54CY5626 Putative folylpolyglutama yes no 0.773 0.798 0.323 5e-72
Q09509510 Putative folylpolyglutama yes no 0.517 0.654 0.371 3e-62
Q9Y893514 Folylpolyglutamate syntha N/A no 0.735 0.924 0.305 1e-60
>sp|F4J2K2|FPGS2_ARATH Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS2 PE=1 SV=1 Back     alignment and function desciption
 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/650 (60%), Positives = 470/650 (72%), Gaps = 29/650 (4%)

Query: 1   MLVHSNTTLNCGIFGVLHF--RNCQFSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLR 58
           MLV     L C   GV  F  +   F  + K  F SLP    +     NN        LR
Sbjct: 1   MLVCGKGFLKCRAPGVPFFCDKRKSFFTKTKRGFHSLPLGTGVRVYFNNN--------LR 52

Query: 59  YAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITRQKRGEQSHIAGRYGKL 118
           Y+  S +V  K   N  + E + + P  SSY++AM+ALS+LI+R+ RG+++   G   KL
Sbjct: 53  YSSNSIEVVEKAAINMGSKEDKADNPALSSYDDAMEALSTLISRRNRGDRTPTKGNRDKL 112

Query: 119 QRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVR 178
           +++  YLKIL LED+I ELKVIHV+GTKGKGSTC F EAILR CGFRTG+FTSPHLIDVR
Sbjct: 113 EQVVTYLKILDLEDKIKELKVIHVAGTKGKGSTCVFSEAILRNCGFRTGMFTSPHLIDVR 172

Query: 179 ERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAI 238
           ERFRI+GLDI+E+KFL YFWECW LL+E   + L MPPLFQFLTVLAFKIFVCE+VDVA+
Sbjct: 173 ERFRIDGLDISEEKFLQYFWECWKLLKEKAVDGLTMPPLFQFLTVLAFKIFVCEKVDVAV 232

Query: 239 IEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQ 298
           IEVGLGG+ DSTNVI++PVVCG+ SLGMDHM++LGNTL DIAFHKAGIFKPQIPAFTVPQ
Sbjct: 233 IEVGLGGKLDSTNVIQKPVVCGIASLGMDHMDILGNTLADIAFHKAGIFKPQIPAFTVPQ 292

Query: 299 LSEAMSVLQDRALELMVPLEVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRT 358
           LSEAM VLQ  A  L VPLEV APL+ +KL  + L LSGDHQLVNAGLAVSLS CWL+RT
Sbjct: 293 LSEAMDVLQKTANNLEVPLEVVAPLEPKKLDGVTLGLSGDHQLVNAGLAVSLSRCWLQRT 352

Query: 359 GNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVP-NSSGLFENSSGELIFY 417
           GNW+K+  N+ +  ++P AF RGL+TA L GRAQ+V+D+   P +SS   E   G+LIFY
Sbjct: 353 GNWKKIFPNESKETEIPVAFCRGLATARLHGRAQVVHDVVSDPQDSSDSMETPCGDLIFY 412

Query: 418 LDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKH 477
           LDGAH+ ESMEAC +WFSS V+  G+ SLS+                NGY+ H  E    
Sbjct: 413 LDGAHSPESMEACGRWFSSAVR--GDKSLSTAV--------------NGYMRHG-EYGTD 455

Query: 478 ANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIP 537
            N++SKQILLFNCME R PQVLLP+LV+TCASSGTHFS+ALFVPS+STY+KV SG+S IP
Sbjct: 456 LNRVSKQILLFNCMEVRDPQVLLPKLVTTCASSGTHFSRALFVPSMSTYNKVISGASAIP 515

Query: 538 LAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLC-SPAEE 596
                KDL+WQF LQRLWE+ I G D  L+ +   +    LPP  FL  DAP C  PA  
Sbjct: 516 SDTRRKDLTWQFRLQRLWEKSIQGTDAGLDHTLKPDGITALPPHDFLCGDAPQCGGPAGT 575

Query: 597 CFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLLKR 646
               SAV+PSLPLTI WLRD V+ NPS++++VLVTGSLHLVGDVL+LLKR
Sbjct: 576 PVTSSAVMPSLPLTINWLRDCVRRNPSLKLEVLVTGSLHLVGDVLRLLKR 625
Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Essential for organellar and whole-plant folate homeostasis.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 7
>sp|F4K2A1|FPGS1_ARATH Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8W035|FPGS3_ARATH Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS3 PE=1 SV=1 Back     alignment and function description
>sp|Q05932|FOLC_HUMAN Folylpolyglutamate synthase, mitochondrial OS=Homo sapiens GN=FPGS PE=1 SV=3 Back     alignment and function description
>sp|A6H751|FOLC_BOVIN Folylpolyglutamate synthase, mitochondrial OS=Bos taurus GN=FPGS PE=2 SV=1 Back     alignment and function description
>sp|Q924L9|FOLC_CRIGR Folylpolyglutamate synthase, mitochondrial OS=Cricetulus griseus GN=FPGS PE=2 SV=1 Back     alignment and function description
>sp|P48760|FOLC_MOUSE Folylpolyglutamate synthase, mitochondrial OS=Mus musculus GN=Fpgs PE=1 SV=3 Back     alignment and function description
>sp|Q54CY5|FOLC_DICDI Putative folylpolyglutamate synthase OS=Dictyostelium discoideum GN=folC PE=3 SV=1 Back     alignment and function description
>sp|Q09509|FOLC_CAEEL Putative folylpolyglutamate synthase OS=Caenorhabditis elegans GN=F25B5.6 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y893|FOLE_CANAX Folylpolyglutamate synthase OS=Candida albicans GN=MET7 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query646
297739883673 unnamed protein product [Vitis vinifera] 0.965 0.927 0.664 0.0
225441349570 PREDICTED: folylpolyglutamate synthase, 0.871 0.987 0.711 0.0
224086916588 folylpolyglutamate synthase [Populus tri 0.900 0.989 0.676 0.0
224137770581 folylpolyglutamate synthase [Populus tri 0.893 0.993 0.682 0.0
79396625625 DHFS-FPGS homolog C [Arabidopsis thalian 0.961 0.993 0.603 0.0
17976757625 folylpolyglutamate synthetase, mitochond 0.961 0.993 0.6 0.0
356537507658 PREDICTED: folylpolyglutamate synthase, 0.948 0.931 0.606 0.0
255578463581 folylpolyglutamate synthase, putative [R 0.852 0.948 0.657 0.0
449494729558 PREDICTED: folylpolyglutamate synthase-l 0.857 0.992 0.646 0.0
449437789558 PREDICTED: folylpolyglutamate synthase-l 0.857 0.992 0.646 0.0
>gi|297739883|emb|CBI30065.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/647 (66%), Positives = 501/647 (77%), Gaps = 23/647 (3%)

Query: 1   MLVHSNTTLNCGIFGVLHFRNCQFSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYA 60
           ML+H+   L   +  V  ++     VR  W  + LPA L+  DLT N+         RYA
Sbjct: 49  MLLHTGIYLRHRMLRVSEWK---LPVRSTWRVSCLPAYLDTCDLTRNS--------FRYA 97

Query: 61  KMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQR 120
           K+S Q      S   T E  E LPLSSSYE AM+ALSSLIT QKRG +S ++G+YGKL R
Sbjct: 98  KISYQTMENMKS---TIECSEELPLSSSYEMAMEALSSLITSQKRGGRSSVSGKYGKLDR 154

Query: 121 MSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRER 180
           MSMYLKILGLE++IA LK+IHV+GTKGKGSTCTFCEAILRECGFRTGLF SPHLIDVRER
Sbjct: 155 MSMYLKILGLEEKIAGLKIIHVAGTKGKGSTCTFCEAILRECGFRTGLFISPHLIDVRER 214

Query: 181 FRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIE 240
            RI+GLDI+E+KFL +FW+CW+ L+E VT DLPMPPLFQFL+VLAFKIF CE+VDVAIIE
Sbjct: 215 LRIDGLDISEEKFLMHFWDCWNRLKEKVTNDLPMPPLFQFLSVLAFKIFTCEEVDVAIIE 274

Query: 241 VGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLS 300
           VGLGG++DSTNVIKEPVVCG+TSLGMDH E LG+TL  IA HKAGIFKPQIPAFTVPQLS
Sbjct: 275 VGLGGKRDSTNVIKEPVVCGITSLGMDHTETLGDTLGKIASHKAGIFKPQIPAFTVPQLS 334

Query: 301 EAMSVLQDRALELMVPLEVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGN 360
           EAM VLQ RA EL VPLEVAAPLD + LK L+LSLSGDHQ +NAGLAVSL +CWL+ TGN
Sbjct: 335 EAMDVLQQRAHELEVPLEVAAPLDHKNLKGLKLSLSGDHQFINAGLAVSLCKCWLQSTGN 394

Query: 361 WEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVP-NSSGLFENSSGELIFYLD 419
           WEK+  N  Q  DL +AF+RGLSTA L GRAQ VYD  L   N S   ENS G+LIFYLD
Sbjct: 395 WEKLLKNANQEDDLLEAFLRGLSTARLSGRAQTVYDTPLKSYNLSEATENSFGDLIFYLD 454

Query: 420 GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHAN 479
           GAH+ ESM+ CA+WFS+ VK   NS  SS     K  NM      NGYI HK E T+ +N
Sbjct: 455 GAHSPESMDVCARWFSNAVKERRNSPSSSF---VKVGNMV-----NGYIHHKKEDTEESN 506

Query: 480 KISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLA 539
           KISKQILLFNCME R P +LLP+LV TCASSGTHFSKALFVPS+STY+KVTSG S +PL 
Sbjct: 507 KISKQILLFNCMEVRDPHILLPQLVRTCASSGTHFSKALFVPSISTYNKVTSGDSIVPLD 566

Query: 540 ISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFA 599
           +  +DLSWQF+LQR+WE+IIH  D V+++S   +S  ILPP +FLYE+    SP+ +C +
Sbjct: 567 LPARDLSWQFNLQRIWEKIIHNKDVVVDESFKMDSPRILPPFEFLYENGSSGSPSSKCLS 626

Query: 600 CSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLLKR 646
            SAV+PSLPLTI+WLRD V+ENPS+R+QVLVTGSLHLVGDVLKLL+R
Sbjct: 627 SSAVMPSLPLTIRWLRDCVKENPSLRLQVLVTGSLHLVGDVLKLLRR 673

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225441349|ref|XP_002274685.1| PREDICTED: folylpolyglutamate synthase, mitochondrial [Vitis vinifera] Back     alignment and taxonomy information
>gi|224086916|ref|XP_002308003.1| folylpolyglutamate synthase [Populus trichocarpa] gi|222853979|gb|EEE91526.1| folylpolyglutamate synthase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224137770|ref|XP_002322647.1| folylpolyglutamate synthase [Populus trichocarpa] gi|222867277|gb|EEF04408.1| folylpolyglutamate synthase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|79396625|ref|NP_187627.3| DHFS-FPGS homolog C [Arabidopsis thaliana] gi|363579869|sp|F4J2K2.1|FPGS2_ARATH RecName: Full=Folylpolyglutamate synthase; AltName: Full=DHFS-FPGS homolog C; AltName: Full=Folylpoly-gamma-glutamate synthetase; Short=FPGS; AltName: Full=Tetrahydrofolylpolyglutamate synthase; Short=Tetrahydrofolate synthase gi|332641345|gb|AEE74866.1| DHFS-FPGS homolog C [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|17976757|emb|CAC81075.1| folylpolyglutamate synthetase, mitochondrial isoform [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356537507|ref|XP_003537268.1| PREDICTED: folylpolyglutamate synthase, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|255578463|ref|XP_002530096.1| folylpolyglutamate synthase, putative [Ricinus communis] gi|223530407|gb|EEF32295.1| folylpolyglutamate synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449494729|ref|XP_004159630.1| PREDICTED: folylpolyglutamate synthase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449437789|ref|XP_004136673.1| PREDICTED: folylpolyglutamate synthase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query646
TAIR|locus:2100048625 DFC "DHFS-FPGS homolog C" [Ara 0.961 0.993 0.592 3.2e-191
TAIR|locus:2153639571 DFB "DHFS-FPGS homolog B" [Ara 0.518 0.586 0.570 7.1e-141
TAIR|locus:2078936492 DFD "DHFS-FPGS homolog D" [Ara 0.481 0.632 0.546 5.7e-119
UNIPROTKB|Q05932587 FPGS "Folylpolyglutamate synth 0.521 0.574 0.443 1.2e-75
UNIPROTKB|A6H751585 FPGS "Folylpolyglutamate synth 0.526 0.581 0.419 9.7e-74
UNIPROTKB|E2RRC8588 FPGS "Folylpolyglutamate synth 0.509 0.559 0.434 1.6e-73
ZFIN|ZDB-GENE-040426-2781572 fpgs "folylpolyglutamate synth 0.518 0.585 0.439 2.5e-73
MGI|MGI:95576587 Fpgs "folylpolyglutamyl synthe 0.520 0.572 0.432 8.6e-73
UNIPROTKB|E1B859430 FPGS "Folylpolyglutamate synth 0.526 0.790 0.419 4.7e-70
WB|WBGene00017777510 F25B5.6 [Caenorhabditis elegan 0.513 0.650 0.384 6.4e-66
TAIR|locus:2100048 DFC "DHFS-FPGS homolog C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1853 (657.3 bits), Expect = 3.2e-191, P = 3.2e-191
 Identities = 385/650 (59%), Positives = 460/650 (70%)

Query:     1 MLVHSNTTLNCGIFGVLHF--RNCQFSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLR 58
             MLV     L C   GV  F  +   F  + K  F SLP    +     NN        LR
Sbjct:     1 MLVCGKGFLKCRAPGVPFFCDKRKSFFTKTKRGFHSLPLGTGVRVYFNNN--------LR 52

Query:    59 YAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITRQKRGEQSHIAGRYGKL 118
             Y+  S +V  K   N  + E + + P  SSY++AM+ALS+LI+R+ RG+++   G   KL
Sbjct:    53 YSSNSIEVVEKAAINMGSKEDKADNPALSSYDDAMEALSTLISRRNRGDRTPTKGNRDKL 112

Query:   119 QRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVR 178
             +++  YLKIL LED+I ELKVIHV+GTKGKGSTC F EAILR CGFRTG+FTSPHLIDVR
Sbjct:   113 EQVVTYLKILDLEDKIKELKVIHVAGTKGKGSTCVFSEAILRNCGFRTGMFTSPHLIDVR 172

Query:   179 ERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAI 238
             ERFRI+GLDI+E+KFL YFWECW LL+E   + L MPPLFQFLTVLAFKIFVCE+VDVA+
Sbjct:   173 ERFRIDGLDISEEKFLQYFWECWKLLKEKAVDGLTMPPLFQFLTVLAFKIFVCEKVDVAV 232

Query:   239 IEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQ 298
             IEVGLGG+ DSTNVI++PVVCG+ SLGMDHM++LGNTL DIAFHKAGIFKPQIPAFTVPQ
Sbjct:   233 IEVGLGGKLDSTNVIQKPVVCGIASLGMDHMDILGNTLADIAFHKAGIFKPQIPAFTVPQ 292

Query:   299 LSEAMSVLQDRALELMVPLEVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRT 358
             LSEAM VLQ  A  L VPLEV APL+ +KL  + L LSGDHQLVNAGLAVSLS CWL+RT
Sbjct:   293 LSEAMDVLQKTANNLEVPLEVVAPLEPKKLDGVTLGLSGDHQLVNAGLAVSLSRCWLQRT 352

Query:   359 GNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVP-NSSGLFENSSGELIFY 417
             GNW+K+  N+ +  ++P AF RGL+TA L GRAQ+V+D+   P +SS   E   G+LIFY
Sbjct:   353 GNWKKIFPNESKETEIPVAFCRGLATARLHGRAQVVHDVVSDPQDSSDSMETPCGDLIFY 412

Query:   418 LDGAHTAESMEACAKWFXXXXXXXXXXXXXXXXXXXXXXXXEEVVQRNGYIGHKMEKTKH 477
             LDGAH+ ESMEAC +WF                              NGY+ H  E    
Sbjct:   413 LDGAHSPESMEACGRWFSSAVRGDKSLSTAV----------------NGYMRHG-EYGTD 455

Query:   478 ANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIP 537
              N++SKQILLFNCME R PQVLLP+LV+TCASSGTHFS+ALFVPS+STY+KV SG+S IP
Sbjct:   456 LNRVSKQILLFNCMEVRDPQVLLPKLVTTCASSGTHFSRALFVPSMSTYNKVISGASAIP 515

Query:   538 LAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCS-PAEE 596
                  KDL+WQF LQRLWE+ I G D  L+ +   +    LPP  FL  DAP C  PA  
Sbjct:   516 SDTRRKDLTWQFRLQRLWEKSIQGTDAGLDHTLKPDGITALPPHDFLCGDAPQCGGPAGT 575

Query:   597 CFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLLKR 646
                 SAV+PSLPLTI WLRD V+ NPS++++VLVTGSLHLVGDVL+LLKR
Sbjct:   576 PVTSSAVMPSLPLTINWLRDCVRRNPSLKLEVLVTGSLHLVGDVLRLLKR 625
GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=IEA;IGI;IMP
GO:0005524 "ATP binding" evidence=IEA
GO:0016874 "ligase activity" evidence=IEA
GO:0005759 "mitochondrial matrix" evidence=IDA
GO:0006730 "one-carbon metabolic process" evidence=RCA;TAS
GO:0009853 "photorespiration" evidence=IMP
GO:0090351 "seedling development" evidence=IMP
TAIR|locus:2153639 DFB "DHFS-FPGS homolog B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078936 DFD "DHFS-FPGS homolog D" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q05932 FPGS "Folylpolyglutamate synthase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A6H751 FPGS "Folylpolyglutamate synthase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RRC8 FPGS "Folylpolyglutamate synthase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2781 fpgs "folylpolyglutamate synthase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:95576 Fpgs "folylpolyglutamyl synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1B859 FPGS "Folylpolyglutamate synthase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
WB|WBGene00017777 F25B5.6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F4J2K2FPGS2_ARATH6, ., 3, ., 2, ., 1, 70.60300.96130.9936yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2.170.824
3rd Layer6.3.20.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025328001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (570 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00030018001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (483 aa)
••   •• 0.955
GSVIVG00036344001
RecName- Full=Thymidylate synthase; EC=2.1.1.45; (284 aa)
     •• 0.915
GSVIVG00014568001
RecName- Full=Thymidylate synthase; EC=2.1.1.45; (284 aa)
     •• 0.914
GSVIVG00027851001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (384 aa)
     •• 0.909
GSVIVG00014289001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (195 aa)
•     • 0.588
GSVIVG00019724001
RecName- Full=Pseudouridylate synthase; EC=5.4.99.-; (304 aa)
•     • 0.478
GSVIVG00005777001
SubName- Full=Chromosome chr3 scaffold_158, whole genome shotgun sequence; (214 aa)
•     • 0.448
GSVIVG00026904001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (363 aa)
      • 0.402
GSVIVG00001677001
SubName- Full=Chromosome chr13 scaffold_120, whole genome shotgun sequence; (946 aa)
•     • 0.401

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query646
PLN02881530 PLN02881, PLN02881, tetrahydrofolylpolyglutamate s 0.0
TIGR01499398 TIGR01499, folC, folylpolyglutamate synthase/dihyd 2e-95
COG0285427 COG0285, FolC, Folylpolyglutamate synthase [Coenzy 1e-83
PLN02913510 PLN02913, PLN02913, dihydrofolate synthetase 9e-43
PRK10846416 PRK10846, PRK10846, bifunctional folylpolyglutamat 2e-29
TIGR04012366 TIGR04012, poly_gGlu_PgsB, poly-gamma-glutamate sy 1e-06
COG0769475 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synt 9e-06
PRK00139460 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-gluta 2e-04
TIGR01085464 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide sy 2e-04
TIGR01087433 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-gl 0.003
>gnl|CDD|215476 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase Back     alignment and domain information 
 Score =  850 bits (2199), Expect = 0.0
 Identities = 316/569 (55%), Positives = 384/569 (67%), Gaps = 43/569 (7%)

Query: 78  EYEENLPLSSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAEL 137
             E++ P S SYE A+ ALSSLIT++ R + S       +   +  YLKIL LE+ I+ L
Sbjct: 5   ATEDDAPTSDSYEEALDALSSLITKKSRADPS---NPGDQFDLLFDYLKILELEEAISRL 61

Query: 138 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYF 197
           KVIHV+GTKGKGSTCTF E+ILR CGFRTGLFTSPHLIDVRERFR++G+DI+E+KFL YF
Sbjct: 62  KVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYF 121

Query: 198 WECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPV 257
           W CW  L+E  TEDLPMP  F+FLT+LAFKIF  EQVDVAI+EVGLGG  D+TNV+++PV
Sbjct: 122 WWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPV 181

Query: 258 VCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPL 317
           VCG+TSLG DHME+LG+TL  IA  KAGIFKP +PAFTVPQ  EAM VL++RA EL VPL
Sbjct: 182 VCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVPQPDEAMRVLEERASELGVPL 241

Query: 318 EVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDA 377
           +V  PLD   L  L+L L+G+HQ +NAGLAV+L   WL+RTG+ E  +    Q   LP+ 
Sbjct: 242 QVVEPLDSYGLSGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEEFEALL--QAGTLPEQ 299

Query: 378 FVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSV 437
           F++GLSTA L GRAQ+V D       S +    SG+L+FYLDGAH+ ESMEACA+WFSS 
Sbjct: 300 FIKGLSTASLQGRAQVVPD-------SYINSEDSGDLVFYLDGAHSPESMEACARWFSSA 352

Query: 438 VKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQ 497
           +KG   S  S                  G           +NKIS+QILLFNCM  R PQ
Sbjct: 353 IKGDEQSPGSGYGP-----------HGGGGKSED----TESNKISEQILLFNCMSVRDPQ 397

Query: 498 VLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWER 557
           +LLP L +TCAS+G  F KALFVP++S Y+KV SG   +P+     DLSWQF+LQR+WE 
Sbjct: 398 LLLPPLANTCASNGVPFKKALFVPNISVYNKVGSG---LPVDDPQVDLSWQFTLQRVWES 454

Query: 558 IIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDS 617
           +I G                        E A       +    SAV PSLPL IKWLRD 
Sbjct: 455 LIRGKAGAPAD-------------AVCEESASSGLNDGKSDENSAVFPSLPLAIKWLRDC 501

Query: 618 VQENPSIRVQVLVTGSLHLVGDVLKLLKR 646
            +ENPS+R QVLVTGSLHLVGDVL+LLK+
Sbjct: 502 ARENPSLRFQVLVTGSLHLVGDVLRLLKK 530

Length = 530
>gnl|CDD|233440 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate synthase Back     alignment and domain information
>gnl|CDD|223362 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|178501 PLN02913, PLN02913, dihydrofolate synthetase Back     alignment and domain information
>gnl|CDD|182774 PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional Back     alignment and domain information
>gnl|CDD|188527 TIGR04012, poly_gGlu_PgsB, poly-gamma-glutamate synthase PgsB/CapB Back     alignment and domain information
>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|234660 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional Back     alignment and domain information
>gnl|CDD|233265 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase Back     alignment and domain information
>gnl|CDD|233266 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 646
PLN02881530 tetrahydrofolylpolyglutamate synthase 100.0
KOG2525496 consensus Folylpolyglutamate synthase [Coenzyme tr 100.0
COG0285427 FolC Folylpolyglutamate synthase [Coenzyme metabol 100.0
PLN02913510 dihydrofolate synthetase 100.0
TIGR01499397 folC folylpolyglutamate synthase/dihydrofolate syn 100.0
PRK10846416 bifunctional folylpolyglutamate synthase/ dihydrof 100.0
PRK00139460 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d 100.0
PRK11929 958 putative bifunctional UDP-N-acetylmuramoylalanyl-D 100.0
PRK14022481 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine l 100.0
TIGR01085464 murE UDP-N-acetylmuramyl-tripeptide synthetase. A 100.0
TIGR01143417 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a 100.0
TIGR02068864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 100.0
COG0769475 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell 100.0
PRK10773453 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a 100.0
PRK14093479 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop 100.0
PRK11929958 putative bifunctional UDP-N-acetylmuramoylalanyl-D 100.0
PRK01438480 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK11930 822 putative bifunctional UDP-N-acetylmuramoyl-tripept 100.0
PRK01390460 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK03803448 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
COG0770451 MurF UDP-N-acetylmuramyl pentapeptide synthase [Ce 100.0
PRK04308445 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK02705459 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK00421461 murC UDP-N-acetylmuramate--L-alanine ligase; Provi 100.0
PRK03806438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
TIGR01081448 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl 100.0
PRK14106450 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK02006498 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
TIGR01087433 murD UDP-N-acetylmuramoylalanine--D-glutamate liga 100.0
PRK03369488 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK14573 809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 100.0
PRK02472447 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
TIGR01082448 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a 100.0
PRK01368454 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK04690468 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 99.98
PRK00141473 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 99.97
COG0771448 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas 99.97
COG0773459 MurC UDP-N-acetylmuramate-alanine ligase [Cell env 99.97
PRK04663438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 99.97
PRK01710458 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 99.96
PRK00683418 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 99.96
PRK03815401 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 99.93
PRK14016727 cyanophycin synthetase; Provisional 99.92
PF08245188 Mur_ligase_M: Mur ligase middle domain; InterPro: 99.91
PF0287591 Mur_ligase_C: Mur ligase family, glutamate ligase 99.21
COG1703323 ArgK Putative periplasmic protein kinase ArgK and 97.5
PF03308266 ArgK: ArgK protein; InterPro: IPR005129 Bacterial 96.2
TIGR00750300 lao LAO/AO transport system ATPase. Mutations have 95.79
PRK09435332 membrane ATPase/protein kinase; Provisional 93.95
PRK13869405 plasmid-partitioning protein RepA; Provisional 93.05
PHA02519387 plasmid partition protein SopA; Reviewed 92.44
COG1072283 CoaA Panthothenate kinase [Coenzyme metabolism] 91.97
PRK13705388 plasmid-partitioning protein SopA; Provisional 90.71
PRK01077451 cobyrinic acid a,c-diamide synthase; Validated 89.62
cd03114148 ArgK-like The function of this protein family is u 88.7
COG1763161 MobB Molybdopterin-guanine dinucleotide biosynthes 87.56
TIGR03453387 partition_RepA plasmid partitioning protein RepA. 87.52
COG0489265 Mrp ATPases involved in chromosome partitioning [C 87.22
TIGR03172232 probable selenium-dependent hydroxylase accessory 86.85
TIGR03029274 EpsG chain length determinant protein tyrosine kin 85.5
cd0198399 Fer4_NifH The Fer4_NifH superfamily contains a var 84.17
TIGR03018207 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t 84.16
TIGR01007204 eps_fam capsular exopolysaccharide family. This mo 83.94
TIGR00064272 ftsY signal recognition particle-docking protein F 83.52
PRK10416318 signal recognition particle-docking protein FtsY; 82.38
PRK00652325 lpxK tetraacyldisaccharide 4'-kinase; Reviewed 80.71
cd02040270 NifH NifH gene encodes component II (iron protein) 80.47
>PLN02881 tetrahydrofolylpolyglutamate synthase Back     alignment and domain information 
Probab=100.00  E-value=3.6e-108  Score=910.50  Aligned_cols=524  Identities=60%  Similarity=0.973  Sum_probs=424.5

Q ss_pred             chhhcCCCCCCcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHH
Q 006403           77 TEYEENLPLSSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCE  156 (646)
Q Consensus        77 ~~~~~~~p~~~~y~~A~~~L~sl~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~  156 (646)
                      .+.....|..++|++|+++|+++++++.+..+...   ..+|++|+++|++||+++|.+++++|||||||||||||+|++
T Consensus         4 ~~~~~~~~~~~~y~~a~~~L~sl~~~~~~~~~~~~---~~~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~   80 (530)
T PLN02881          4 MATEDDAPTSDSYEEALDALSSLITKKSRADPSNP---GDQFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTE   80 (530)
T ss_pred             ccccccCccccCHHHHHHHHHhcccchhhcccccc---CCChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHH
Confidence            34566778889999999999999998665543322   378999999999999877778999999999999999999999


Q ss_pred             HHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcE
Q 006403          157 AILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDV  236 (646)
Q Consensus       157 sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~  236 (646)
                      +||+++|+|||+||||||+++||||+|||.+|+++.|.++||+||++++....+..++|+|||++|+|||++|.+++||+
T Consensus        81 siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~  160 (530)
T PLN02881         81 SILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDV  160 (530)
T ss_pred             HHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCE
Confidence            99999999999999999999999999999999999999999999999997655555679999999999999999999999


Q ss_pred             EEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeCCchHHHHHHHHHHHhcCcc
Q 006403          237 AIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVP  316 (646)
Q Consensus       237 aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~q~~~~~~vl~~~a~~~~~~  316 (646)
                      +|||||+|||+|+||++.+|+++|||||++||+++||+|+|+|||+|+||||++.|+|+.+|+++++++++++|++.+++
T Consensus       161 aVlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k~g~p~vt~~q~~ea~~vl~~~A~e~~a~  240 (530)
T PLN02881        161 AILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVPQPDEAMRVLEERASELGVP  240 (530)
T ss_pred             EEEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCHHHHHHHHHHHHhcCCCEEEeCCChHHHHHHHHHHHHhCCc
Confidence            99999999999999999889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccccccchhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCCCCCcEEEEec
Q 006403          317 LEVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYD  396 (646)
Q Consensus       317 l~~~~~~~~~~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~~pGR~E~v~~  396 (646)
                      ++.++.++...+..+.++|.|.||..||++|++++..||++.|...  .+.......+++.+.+||+++.||||||++..
T Consensus       241 l~~v~~~~~~~~~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~--~~~~~~~~~l~~~i~~GL~~~~wpGR~e~v~~  318 (530)
T PLN02881        241 LQVVEPLDSYGLSGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEE--FEALLQAGTLPEQFIKGLSTASLQGRAQVVPD  318 (530)
T ss_pred             EEEecccccceecccCCCCCChhHHHhHHHHHHHHHHHHhhccccc--cccccccCCCHHHHHHHHHhCCCCceEEEecc
Confidence            9987653321223577899999999999999999999987654210  00001011357899999999999999999965


Q ss_pred             cCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccc---cc
Q 006403          397 ISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHK---ME  473 (646)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  473 (646)
                      ..       .....++++.|||||||||+||++|.+||+...+.....+..                  +|..+.   +.
T Consensus       319 ~~-------~~~~~~~~~~~~LDGAHNp~s~~~l~~wf~~~~~~~~~~~~~------------------~~~~~~~~~~~  373 (530)
T PLN02881        319 SY-------INSEDSGDLVFYLDGAHSPESMEACARWFSSAIKGDEQSPGS------------------GYGPHGGGGKS  373 (530)
T ss_pred             cc-------ccccCCCCCeEEEECCCCHHHHHHHHHHHHHHhcccccCCcc------------------ccccccccccc
Confidence            10       000011347899999999999999999998865432211110                  011000   00


Q ss_pred             cccccccCccEEEEEecCCCCChhhhHHHHHHHhhhcCCCccEEEEeCCCCccccccCCCCccCCCccccchhHHHHHHH
Q 006403          474 KTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQR  553 (646)
Q Consensus       474 ~~~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~l~~q~~l~~  553 (646)
                      ..+...+..++|+||||+++||+..||+.|.+.|.+++.+||+||||||.++|++.  +++ .+..+...+|+||+.+|+
T Consensus       374 ~~~~~~~~~~~ilvF~~~~dkD~~~lL~~L~~~~~~~~~~f~~aiF~~n~~~~~~~--~~~-~~~~~~~~~l~~q~~l~~  450 (530)
T PLN02881        374 EDTESNKISEQILLFNCMSVRDPQLLLPPLANTCASNGVPFKKALFVPNISVYNKV--GSG-LPVDDPQVDLSWQFTLQR  450 (530)
T ss_pred             ccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCCeEEEcCCccccCCC--ccc-CCCcchhhhHHHHHHHHH
Confidence            01122344579999999999999999999999998888999999999999999886  343 333344568999999999


Q ss_pred             HHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHHHHHhhhhcCCCCcceEEEeCc
Q 006403          554 LWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGS  633 (646)
Q Consensus       554 ~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~~~~~~~~VLVTGS  633 (646)
                      .|++|+++....+..+..             ++..+.+.+.....++++|++||++||+|+|+++.+++..++|||||||
T Consensus       451 ~W~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~r~~~~~~~~~~~~vlVTGS  517 (530)
T PLN02881        451 VWESLIRGKAGAPADAVC-------------EESASSGLNDGKSDENSAVFPSLPLAIKWLRDCARENPSLRFQVLVTGS  517 (530)
T ss_pred             HHHHhccccccccccccc-------------cccccccccCCCCCCceeEecCHHHHHHHHHHHhhhCCCcceEEEEecc
Confidence            999997533211000111             1222233344445568999999999999999999876666899999999


Q ss_pred             hhcHHhHHhhhcC
Q 006403          634 LHLVGDVLKLLKR  646 (646)
Q Consensus       634 lhLVG~vl~~l~~  646 (646)
                      ||||||+|++|+|
T Consensus       518 lhLvG~~l~~l~~  530 (530)
T PLN02881        518 LHLVGDVLRLLKK  530 (530)
T ss_pred             hhhhhHHHHHhcC
Confidence            9999999999986

>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism] Back     alignment and domain information
>PLN02913 dihydrofolate synthetase Back     alignment and domain information
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase Back     alignment and domain information
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional Back     alignment and domain information
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional Back     alignment and domain information
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional Back     alignment and domain information
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional Back     alignment and domain information
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase Back     alignment and domain information
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed Back     alignment and domain information
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional Back     alignment and domain information
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional Back     alignment and domain information
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase Back     alignment and domain information
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase Back     alignment and domain information
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase Back     alignment and domain information
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment Back     alignment and domain information
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family Back     alignment and domain information
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] Back     alignment and domain information
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components Back     alignment and domain information
>TIGR00750 lao LAO/AO transport system ATPase Back     alignment and domain information
>PRK09435 membrane ATPase/protein kinase; Provisional Back     alignment and domain information
>PRK13869 plasmid-partitioning protein RepA; Provisional Back     alignment and domain information
>PHA02519 plasmid partition protein SopA; Reviewed Back     alignment and domain information
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism] Back     alignment and domain information
>PRK13705 plasmid-partitioning protein SopA; Provisional Back     alignment and domain information
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated Back     alignment and domain information
>cd03114 ArgK-like The function of this protein family is unkown Back     alignment and domain information
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>TIGR03453 partition_RepA plasmid partitioning protein RepA Back     alignment and domain information
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC Back     alignment and domain information
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG Back     alignment and domain information
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain Back     alignment and domain information
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase Back     alignment and domain information
>TIGR01007 eps_fam capsular exopolysaccharide family Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed Back     alignment and domain information
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query646
1o5z_A442 Crystal Structure Of Folylpolyglutamate Synthase (T 2e-34
1fgs_A428 Folylpolyglutamate Synthetase From Lactobacillus Ca 2e-27
2gca_A428 Apo Form Of L. Casei Fpgs Length = 428 5e-27
1jbv_A428 Fpgs-Amppcp Complex Length = 428 8e-27
2gcb_A428 G51sS52T DOUBLE MUTANT OF L. CASEI FPGS Length = 42 2e-26
2gc6_A428 S73a Mutant Of L. Casei Fpgs Length = 428 6e-26
2gc5_A428 G51s Mutant Of L. Casei Fpgs Length = 428 2e-25
1w78_A422 E.Coli Folc In Complex With Dhpp And Adp Length = 4 1e-24
3n2a_A437 Crystal Structure Of Bifunctional Folylpolyglutamat 2e-24
2vor_A487 Crystal Structures Of Mycobacterium Tuberculosis Fo 1e-20
2vos_A487 Mycobacterium Tuberculosis Folylpolyglutamate Synth 4e-12
>pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166) From Thermotoga Maritima At 2.10 A Resolution Length = 442 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 163/334 (48%), Gaps = 53/334 (15%)
Query: 118 LQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDV 177
           L+R+SM L  LG  +   E K IH+ GT GKGS       IL   G+R G + SPHL   
Sbjct: 35  LERISMLLSKLG--NPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTF 92
Query: 178 RERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVA 237
           RER R+N   I+E+  +  +     +L E   E++  P  F+ +T +AF  F  + VD+A
Sbjct: 93  RERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIA 152
Query: 238 IIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVP 297
           ++EVGLGG  D+TNV+  P+   + ++  DH + LG T+  IA+ K+GI K ++P  T  
Sbjct: 153 VLEVGLGGRLDATNVVF-PLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGE 211
Query: 298 QLSEAMSVLQDRALE---LMVPLEVAAPLDIEKLK---------------RLELSLSGDH 339
           +  EA+ V++D A +    M  ++    + ++ LK                L L+++G H
Sbjct: 212 RKREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPH 271
Query: 340 QLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVR-GLSTAHLLGRAQIVYDIS 398
           Q+ NAG+A+   E                  G  L +  +R GL  A  LGR +I+    
Sbjct: 272 QIENAGVALKTLEA----------------TGLPLSEKAIREGLKNAKNLGRFEIL---- 311
Query: 399 LVPNSSGLFENSSGELIFYLDGAHTAESMEACAK 432
                       +G++ + LDGAH     E+  +
Sbjct: 312 ----------EKNGKM-YILDGAHNPHGAESLVR 334
>pdb|1FGS|A Chain A, Folylpolyglutamate Synthetase From Lactobacillus Casei Length = 428 Back     alignment and structure
>pdb|2GCA|A Chain A, Apo Form Of L. Casei Fpgs Length = 428 Back     alignment and structure
>pdb|1JBV|A Chain A, Fpgs-Amppcp Complex Length = 428 Back     alignment and structure
>pdb|2GCB|A Chain A, G51sS52T DOUBLE MUTANT OF L. CASEI FPGS Length = 428 Back     alignment and structure
>pdb|2GC6|A Chain A, S73a Mutant Of L. Casei Fpgs Length = 428 Back     alignment and structure
>pdb|2GC5|A Chain A, G51s Mutant Of L. Casei Fpgs Length = 428 Back     alignment and structure
>pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp Length = 422 Back     alignment and structure
>pdb|3N2A|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate SynthaseDIHYDROFOLATE SYNTHASE FROM YERSINIA PESTIS CO92 Length = 437 Back     alignment and structure
>pdb|2VOR|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed With Adp And Amppcp Length = 487 Back     alignment and structure
>pdb|2VOS|A Chain A, Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed With Adp Length = 487 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query646
1jbw_A428 Folylpolyglutamate synthase; FPGS folate AMPPCP te 5e-96
1o5z_A442 Folylpolyglutamate synthase/dihydrofolate synthas; 2e-94
2vos_A487 Folylpolyglutamate synthase protein FOLC; ligase, 1e-90
3nrs_A437 Dihydrofolate:folylpolyglutamate synthetase; struc 7e-83
1w78_A422 FOLC bifunctional protein; DHFS, dihydrofolate syn 1e-80
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
2wtz_A535 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di 1e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 2e-04
1e8c_A498 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami 5e-04
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Length = 428 Back     alignment and structure
 Score =  300 bits (771), Expect = 5e-96
 Identities = 95/366 (25%), Positives = 151/366 (41%), Gaps = 62/366 (16%)

Query: 88  SYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGL-EDRIAELKVIHVSGTK 146
           +Y   +  + S     K G            +R+   L  LG  + +    + IHV+GT 
Sbjct: 2   NYTETVAYIHSFPRLAKTG----------DHRRILTLLHALGNPQQQ---GRYIHVTGTN 48

Query: 147 GKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRE 206
           GKGS       +L   G   GL+TSP ++   ER  I+   I +   +         L  
Sbjct: 49  GKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALER 108

Query: 207 NVTEDLPMPP-LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLG 265
              +        F+F+T LA+  F   QVDVA+IEVG+GG+ DSTNVI  PVV  +T + 
Sbjct: 109 LQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVIT-PVVSVLTEVA 167

Query: 266 MDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP--- 322
           +DH +LLG+T+  IA HKAGI K  IP  T   + +A +V+  +                
Sbjct: 168 LDHQKLLGHTITAIAKHKAGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFS 227

Query: 323 ------------LDIE----KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSH 366
                          E    ++  LE+ L GD+Q  N  +A+  ++ + ++T     ++ 
Sbjct: 228 VPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTE--WPLT- 284

Query: 367 NDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAES 426
                   P    +GL+ +H   R + +                S   +  +DGAH  + 
Sbjct: 285 --------PQNIRQGLAASHWPARLEKI----------------SDTPLIVIDGAHNPDG 320

Query: 427 MEACAK 432
           +     
Sbjct: 321 INGLIT 326
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Length = 442 Back     alignment and structure
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Length = 487 Back     alignment and structure
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* Length = 437 Back     alignment and structure
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Length = 422 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Length = 535 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query646
3nrs_A437 Dihydrofolate:folylpolyglutamate synthetase; struc 100.0
2vos_A487 Folylpolyglutamate synthase protein FOLC; ligase, 100.0
1jbw_A428 Folylpolyglutamate synthase; FPGS folate AMPPCP te 100.0
1o5z_A442 Folylpolyglutamate synthase/dihydrofolate synthas; 100.0
1w78_A422 FOLC bifunctional protein; DHFS, dihydrofolate syn 100.0
1e8c_A498 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami 100.0
2wtz_A535 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di 100.0
1gg4_A452 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino 100.0
2am1_A454 SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl 100.0
1p3d_A475 UDP-N-acetylmuramate--alanine ligase; alpha/beta p 100.0
2f00_A491 UDP-N-acetylmuramate--L-alanine ligase; amide bond 100.0
1j6u_A469 UDP-N-acetylmuramate-alanine ligase MURC; structur 100.0
2x5o_A439 UDP-N-acetylmuramoylalanine--D-glutamate ligase; A 100.0
4hv4_A494 UDP-N-acetylmuramate--L-alanine ligase; MURC, yers 100.0
3lk7_A451 UDP-N-acetylmuramoylalanine--D-glutamate ligase; a 100.0
3hn7_A524 UDP-N-acetylmuramate-L-alanine ligase; ATP-binding 100.0
3eag_A326 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME 99.94
3mvn_A163 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M 99.35
2obn_A349 Hypothetical protein; structural genomics, joint c 91.4
1byi_A224 Dethiobiotin synthase; biotin synthesis, cyclo-lig 89.5
3bfv_A271 CAPA1, CAPB2, membrane protein CAPA1, protein tyro 87.75
3of5_A228 Dethiobiotin synthetase; structural genomics, cent 87.49
3fwy_A314 Light-independent protochlorophyllide reductase I 87.12
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 86.79
4dzz_A206 Plasmid partitioning protein PARF; deviant walker 85.88
3cio_A299 ETK, tyrosine-protein kinase ETK; WZC, escherichia 85.39
3fgn_A251 Dethiobiotin synthetase; biotin biosynthesis, BIOD 85.38
1xjc_A169 MOBB protein homolog; structural genomics, midwest 85.23
1g3q_A237 MIND ATPase, cell division inhibitor; alpha-beta-a 84.15
3la6_A286 Tyrosine-protein kinase WZC; P-loop protein, nucle 83.8
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 83.55
3ez2_A398 Plasmid partition protein A; type IA, DNA binding, 83.4
2oze_A298 ORF delta'; para, walker type atpases, DNA segrega 83.25
1wcv_1257 SOJ, segregation protein; ATPase, bacterial, chrom 80.93
1hyq_A263 MIND, cell division inhibitor (MIND-1); MINC, FTSZ 80.55
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* Back     alignment and structure
Probab=100.00  E-value=6.1e-72  Score=614.08  Aligned_cols=401  Identities=26%  Similarity=0.319  Sum_probs=311.6

Q ss_pred             CCCcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCC
Q 006403           85 LSSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGF  164 (646)
Q Consensus        85 ~~~~y~~A~~~L~sl~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~  164 (646)
                      ...+|+++++||.++..+          +.+++|+||+++|++||  +|+.++++|||||||||||||+|+++||+++|+
T Consensus        12 ~~~~~~~~l~~l~~~~~~----------~~~~gL~r~~~ll~~lg--~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~   79 (437)
T 3nrs_A           12 ATSPLAAWLCYLEHLHSQ----------PIELGLERVKQVAERLD--LLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGL   79 (437)
T ss_dssp             TTSCHHHHHHHHHTC-----------------CCHHHHHHHHHTT--CSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred             CCcCHHHHHHHHHhcCCC----------CCCCCHHHHHHHHHHcC--CccccCCEEEEECCcChHHHHHHHHHHHHHCCC
Confidence            356899999999998754          23479999999999999  588899999999999999999999999999999


Q ss_pred             CeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccC
Q 006403          165 RTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG  244 (646)
Q Consensus       165 kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~G  244 (646)
                      |||+||||||.+|||||+|||++|+++.|.++|.+|.....     + ..|++||++|++||.+|.++++|++|||||+|
T Consensus        80 ~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~~v~~~~~-----~-~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlg  153 (437)
T 3nrs_A           80 RVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQIEAGRG-----D-ISLTYFEFGTLSALQLFKQAKLDVVILEVGLG  153 (437)
T ss_dssp             CEEEECCCCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHT-----T-CCCCHHHHHHHHHHHHHHHTCCSEEEEECSSS
T ss_pred             cEEEECCCCcCCcceEEEECCEECCHHHHHHHHHHHHHhhc-----C-CCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            99999999999999999999999999999998877655321     1 35899999999999999999999999999999


Q ss_pred             CCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeCCchHHHHHHHHHHHhcCccEEEecc-c
Q 006403          245 GEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-L  323 (646)
Q Consensus       245 Gr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~~-~  323 (646)
                      ||+|+||++ +|+++|||||++||+++||+|+|+||++|++|||++.++|++.+++.  .++.+.|++.+++++.++. +
T Consensus       154 grld~tnii-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~I~~~~~~~V~~~d~~~--~~~~~~a~~~~~~~~~~g~~~  230 (437)
T 3nrs_A          154 GRLDATNIV-DSDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGEPDMP--QSIADVAAELGAQLYRRDVAW  230 (437)
T ss_dssp             STTSGGGGS-CCSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTTSEEEECCSSCC--HHHHHHHHHHTCEEEEBTTTE
T ss_pred             Ccccccccc-CCCEEEEcCccHHHHHHhCCcHHHHHHHHHhhccCCCeEEECCccHH--HHHHHHHHHcCCcEEEecccc
Confidence            999999998 69999999999999999999999999999999999999999977643  4677788888888776542 1


Q ss_pred             ccc----------------c-------hhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHH
Q 006403          324 DIE----------------K-------LKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVR  380 (646)
Q Consensus       324 ~~~----------------~-------~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~  380 (646)
                      ++.                .       ...+.++++| ||..|++.|++++..+  ..|             ..+++|.+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~-~~~~Na~~Alaa~~~~--~lg-------------i~~~~i~~  294 (437)
T 3nrs_A          231 KFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPN-VPLANAATALAVLHYS--ELP-------------LSDEAIRQ  294 (437)
T ss_dssp             EEEC--------------CCEEEEETTEEEEEECCCS-SCHHHHHHHHHHHHHH--TCC-------------CCHHHHHH
T ss_pred             eeeecccccccccccccCceEEEecCCcceeccCCcc-hhHHHHHHHHHHHHHh--CCC-------------CCHHHHHH
Confidence            100                0       0124566775 4666666666555443  113             23688999


Q ss_pred             HHhcCCCCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhH
Q 006403          381 GLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEE  460 (646)
Q Consensus       381 gL~~~~~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (646)
                      ||++++||||||++...                +.+|+||||||+|+++++++++...+..                   
T Consensus       295 gL~~~~~pGR~e~v~~~----------------~~vi~D~AHNp~a~~all~~l~~~~~~~-------------------  339 (437)
T 3nrs_A          295 GLQAASLPGRFQVVSEQ----------------PLLILDVAHNPHAARYLVNRLAQVINPV-------------------  339 (437)
T ss_dssp             HHHHCCCTTSSEEEETT----------------TEEEECCCCSHHHHHHHHHHHHHTC----------------------
T ss_pred             HHHhCCCCCceEEEecC----------------CeEEEECCCCHHHHHHHHHHHHhhcchh-------------------
Confidence            99999999999999754                4799999999999999999987211000                   


Q ss_pred             HHhhccccccccccccccccCccEEEEEecCCCCChhhhHHHHHHHhhhcCCCccEEEEeCCCCccccccCCCCccCCCc
Q 006403          461 VVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAI  540 (646)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~  540 (646)
                                      ...+.+|+++|||+++|||...+++.|.+       .++++++++...        .+..++  
T Consensus       340 ----------------~~~~~~r~i~V~G~~~dkd~~~~~~~l~~-------~~~~v~~~~~~~--------~r~~~~--  386 (437)
T 3nrs_A          340 ----------------NASKQGKVRAVVGMLSDKDIAGTLACLSE-------RVDEWYCAPLEG--------PRGASA--  386 (437)
T ss_dssp             ---------------------CCEEEEECCBTTBCHHHHHHHHTT-------TCCEEEECCCSS--------TTBCCH--
T ss_pred             ----------------hhcCCCCEEEEEeCCCCCCHHHHHHHHHh-------cCCEEEEeCCCC--------CCCCCH--
Confidence                            00123578999999999999888776642       468888876541        111111  


Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHHHHHhhhhc
Q 006403          541 SGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQE  620 (646)
Q Consensus       541 ~~~~l~~q~~l~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~  620 (646)
                                     +++...-.                                   .. .+++++++|++++.+.++.
T Consensus       387 ---------------~~l~~~~~-----------------------------------~~-~~~~d~~~Ai~~a~~~a~~  415 (437)
T 3nrs_A          387 ---------------GQLAEHLV-----------------------------------SA-RQFSDVETAWRQAMQDADT  415 (437)
T ss_dssp             ---------------HHHHTTCS-----------------------------------SC-EECSSHHHHHHHHHHHCCT
T ss_pred             ---------------HHHHHHHh-----------------------------------hC-CCcCCHHHHHHHHHHhcCC
Confidence                           11211000                                   01 4678999999999887643


Q ss_pred             CCCCcceEEEeCchhcHHhHHhhhc
Q 006403          621 NPSIRVQVLVTGSLHLVGDVLKLLK  645 (646)
Q Consensus       621 ~~~~~~~VLVTGSlhLVG~vl~~l~  645 (646)
                          .--|||+||||+||++++.|.
T Consensus       416 ----~D~VLv~GS~~~v~~~~~~~~  436 (437)
T 3nrs_A          416 ----QDVVIVCGSFHTVAHVMAALH  436 (437)
T ss_dssp             ----TCEEEEESSHHHHHHHHHHTT
T ss_pred             ----CCeEEEEehHHHHHHHHHHhc
Confidence                226999999999999998874
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Back     alignment and structure
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Back     alignment and structure
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Back     alignment and structure
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Back     alignment and structure
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Back     alignment and structure
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Back     alignment and structure
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Back     alignment and structure
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* Back     alignment and structure
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Back     alignment and structure
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Back     alignment and structure
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Back     alignment and structure
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Back     alignment and structure
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A Back     alignment and structure
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Back     alignment and structure
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Back     alignment and structure
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} Back     alignment and structure
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi} Back     alignment and structure
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} Back     alignment and structure
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A Back     alignment and structure
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* Back     alignment and structure
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} Back     alignment and structure
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Back     alignment and structure
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} Back     alignment and structure
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Back     alignment and structure
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Back     alignment and structure
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* Back     alignment and structure
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A Back     alignment and structure
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} Back     alignment and structure
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* Back     alignment and structure
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 646
d2gc6a2296 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase { 7e-30
d1o5za2296 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase 3e-29
d1e8ca3234 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptid 9e-08
d1j6ua3207 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine l 6e-06
d1gg4a4214 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl 7e-05
d2jfga3204 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine 1e-04
>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Length = 296 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

 Score =  117 bits (294), Expect = 7e-30
 Identities = 65/318 (20%), Positives = 116/318 (36%), Gaps = 42/318 (13%)

Query: 88  SYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKG 147
           +Y   +  + S     K G            +R+   L  LG   +  + + IHV+GT G
Sbjct: 2   NYTETVAYIHSFPRLAKTG----------DHRRILTLLHALGNPQQ--QGRYIHVTGTNG 49

Query: 148 KGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLREN 207
           KGS       +L   G   GL+T+P ++   ER  I+   I +   +         L   
Sbjct: 50  KGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERL 109

Query: 208 VTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMD 267
             +                  +  ++     +     G    +  +  PVV  +T + +D
Sbjct: 110 QQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITPVVSVLTEVALD 169

Query: 268 HMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAPL---- 323
           H +LLG+T+  IA HKAGI K  IP  T   + +A +V+  +                  
Sbjct: 170 HQKLLGHTITAIAKHKAGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVP 229

Query: 324 ---------------DIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHND 368
                             ++  LE+ L GD+Q  N  +A+  ++ + ++T     ++   
Sbjct: 230 KAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTE--WPLT--- 284

Query: 369 GQGADLPDAFVRGLSTAH 386
                 P    +GL+ +H
Sbjct: 285 ------PQNIRQGLAASH 296
>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]} Length = 296 Back     information, alignment and structure
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 234 Back     information, alignment and structure
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 207 Back     information, alignment and structure
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query646
d2gc6a2296 Folylpolyglutamate synthetase {Lactobacillus casei 100.0
d1o5za2296 Folylpolyglutamate synthetase {Thermotoga maritima 100.0
d1e8ca3234 UDP-N-acetylmuramyl tripeptide synthetase MurE {Es 99.96
d2jfga3204 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 99.94
d1p3da3215 UDP-N-acetylmuramate-alanine ligase MurC {Haemophi 99.94
d1j6ua3207 UDP-N-acetylmuramate-alanine ligase MurC {Thermoto 99.92
d1gg4a4214 UDP-murNac-tripeptide D-alanyl-D-alanine-adding en 99.92
d2gc6a1129 Folylpolyglutamate synthetase, C-terminal domain { 99.79
d1o5za1137 Folylpolyglutamate synthetase, C-terminal domain { 99.78
d1e8ca2160 UDP-N-acetylmuramyl tripeptide synthetase MurE {Es 99.46
d1j6ua2151 UDP-N-acetylmuramate-alanine ligase MurC {Thermoto 98.81
d1gg4a1135 UDP-murNac-tripeptide D-alanyl-D-alanine-adding en 98.46
d1p3da2152 UDP-N-acetylmuramate-alanine ligase MurC {Haemophi 98.33
d2jfga2140 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 96.83
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 95.4
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 94.81
d1byia_224 Dethiobiotin synthetase {Escherichia coli [TaxId: 94.17
d1gg4a398 UDP-murNac-tripeptide D-alanyl-D-alanine-adding en 90.24
d1e8ca1101 UDP-N-acetylmuramyl tripeptide synthetase MurE {Es 89.84
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 87.4
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 86.35
d1ihua2279 Arsenite-translocating ATPase ArsA {Escherichia co 86.34
>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=1.2e-53  Score=443.26  Aligned_cols=274  Identities=31%  Similarity=0.467  Sum_probs=239.7

Q ss_pred             CcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCe
Q 006403           87 SSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRT  166 (646)
Q Consensus        87 ~~y~~A~~~L~sl~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kv  166 (646)
                      |+|+|+++||+++.++          +..++|+||+++|++||  +|++++++|||||||||||||+|+++||+++|++|
T Consensus         1 m~~~e~~~~l~~~~~~----------~~~~~l~r~~~~l~~lg--~P~~~lkvI~VTGTNGKtST~~~i~~IL~~~G~kv   68 (296)
T d2gc6a2           1 MNYTETVAYIHSFPRL----------AKTGDHRRILTLLHALG--NPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTV   68 (296)
T ss_dssp             CCHHHHHHHHHTCCCC----------C---CCHHHHHHHHHTT--CGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCHHHHHHHHHhcCcC----------CCCCCHHHHHHHHHHcC--CchhhCCEEEEeccCcHHHHHHHHHHHHHhcCCce
Confidence            6899999999998754          23378999999999999  69999999999999999999999999999999999


Q ss_pred             EEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhcc-CCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccCC
Q 006403          167 GLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVT-EDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGG  245 (646)
Q Consensus       167 Gl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~-~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~GG  245 (646)
                      |+|||||+.+++||+++||.+|+++.|..++.+++..+..... .....+++|++++++++.+|.+..+|++|+|+|+||
T Consensus        69 G~~tSP~~~~~~e~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~~i~e~g~g~  148 (296)
T d2gc6a2          69 GLYTAPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGG  148 (296)
T ss_dssp             EEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSS
T ss_pred             eeeecccccchhhhhcccccCCcHHHHHHHHHHHHHHHHhHHhhccCCCccHHHHHHHHHHHHHHHhcchhhhhhhHHHH
Confidence            9999999999999999999999999999988888776654332 122357999999999999999999999999999999


Q ss_pred             CccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeCCchHHHHHHHHHHHhcCccEEEecc-cc
Q 006403          246 EKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-LD  324 (646)
Q Consensus       246 r~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~~-~~  324 (646)
                      ++|+||++ +|++++||||+.||+++||+|+++||++|++|||++.++|+..+++++.+++++.+.+.++.++.++. +.
T Consensus       149 ~~d~~~~~-~~~~~viTni~~dH~~~lg~tle~Ia~~K~~i~k~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~  227 (296)
T d2gc6a2         149 DTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFS  227 (296)
T ss_dssp             TTSTTCSC-CCSEEEECCCCSTTHHHHCSSHHHHHHHHHTTCCTTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTTEE
T ss_pred             hhhhhhcc-cceeecccccchHHHHhhhhHHHHHHHhhhcccccccccccccccHHHHHHHHHHHHhhCCcccccCccee
Confidence            99999987 79999999999999999999999999999999999999999999999999999999999888877642 11


Q ss_pred             --------------cc----chhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCc-HHHHHHHHhcC
Q 006403          325 --------------IE----KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADL-PDAFVRGLSTA  385 (646)
Q Consensus       325 --------------~~----~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l-~e~i~~gL~~~  385 (646)
                                    +.    ....+.++|+|.||++||++|++++..++...+.            ++ .+.|++||+++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hn~~Na~~Aia~~~~l~~~~~~------------~i~~e~I~~GL~~~  295 (296)
T d2gc6a2         228 VPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEW------------PLTPQNIRQGLAAS  295 (296)
T ss_dssp             EEEEEECSSSEEEEEEETTEEEEEEEESCCSHHHHHHHHHHHHHHHHHHHHTTC------------CCCHHHHHHHHHHC
T ss_pred             eeccccccCCceEEEEcCCCccCcCCCCCCcHHHHHHHHHHHHHHHHHHhhcCC------------CCCHHHHHHHHHhh
Confidence                          10    1124788999999999999999999988655442            34 68899999875
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gg4a3 c.98.1.1 (A:1-98) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e8ca1 c.98.1.1 (A:3-103) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure