Citrus Sinensis ID: 006420

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640------
Protein Sequence
MVVHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCEEDVEVDDQKVSNDKEQTCFPSYESYSSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNAVGHADESEAKKQDEKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSAN
Secondary Structure (PSIPRED)
ccccEEEEEEcccccccccccEEEccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHcccccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEcHHccccccEEEEcccccccccccccccHHHHHHHHHHccccccccHHHHcccccccHHcccccccccHHHcccccHHHccccHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHccccccHHHHHcccccccHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVVHASFRLISYsdelvdgqpiyvssnclplkaskyepaghsFHAAALKLLGceedvevddqkvsndkeqtcfpsyesysskgkkksgegsnqqdHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDpvkrriydstdefddaipadcapqdfykvfgpaftrngrwsanqlvpslgdentplkevdnfyNFWYSfkswrefphadefdleqaesRDHKRWMERQNAKLTEKARKEEYARIRTLVDnaykrdpriLKRKEAEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNAVghadeseakkqdekknvqqngsvetngSTLLKSFekkekpwsKEEIELLRKGMqkypkgtsRRWEVISEYIGTGRSVEEILKATKTVLlqkpdgakAFDSFlekrkpaqsiasplttreevvgastpqvvqnsgartdsseesssstsqkpadvtaangvssssdQDAWSAVQERALVQALKTFPKETSQRWERVatavpgktVIQCKKKFASLKENfrskksan
Flexible Loop (DISEMBL)
MVVHASFRLISysdelvdgqpIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCEEDVEVDDqkvsndkeqtcfpsyesysskgkkksgegsnQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEqaesrdhkrwmerqnakltekarkeeYARIrtlvdnaykrdprilkrkeaEKAEKQKKKEAKYLAKKLQEEEAARAAEEerrrkveeekrvaevalqqkkvkekekkllrkertrlrtlsasvtsqhlldvsTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNAVGHadeseakkqdekknvqqngsvetngstllksfekkekpwskEEIELLRkgmqkypkgtsrrWEVISEYIGTGRSVEEILKATKtvllqkpdGAKAFDSflekrkpaqsiasplttreevvgastpqvvqnsgartdsseesssstsqkpadvTAANGVSSSSDQDAWSAVQERALVQALktfpketsqrwervatavpgktviqCKKKFaslkenfrskksan
Low Complexity Region (SEG)
MVVHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCEEDVEVDDQKVSNDKEQTCFPsyesysskgkkksgegsNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQaallfaeeteaakqakkdeIETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILkrkeaekaekqkkkeakylakklqeeeaaraaeeerrrkveeekrvaevalQQkkvkekekkllrkertrlrtlSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNAVGHADESEAKKQDEKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTTREEVVGASTPQVVQNSGARTDsseesssstsQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSAN
Disordered region (IsUnstruct)
***HASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCEED***************************************HYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFA*************IETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHAD**********************************IRTLV**********************************************************************************************L******VESLCMSFDMEQL***********************************************************************************SRRWEVISEYIGTGRSVEEILKATKTVLLQ*************************************************************************************ALVQALKTFP****QRWERVATAVPGKTVIQCKKKF**************
Disordered Region (DISOPRED)
****ASF*LISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLG******************************************DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFA*********KKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPS*G**NTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQA*************************ARIRTLVDNAYKRDP*************************************************************K*KKLLRKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDK********************************************************************************WEVISEYIG*******************************************************************************************************ALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKEN*RS*****
Disordered Region (DISEMBL)
MVVHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCEEDVEVDDQKVSNDKEQTCFPS*****************QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEE*********DEIETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKE*************YLAKKL************************EVALQQKKVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNAV*********************SVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTTREEVVGASTP******************************************SAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKE*********
Disordered Region (DISPRO)
*VVHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLL********************************KKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAAL****ETEA****KKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADE****QAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAK************************EEKRVAEVALQQKKVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNAVGHADESEAKK*****************************PWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKR**************************************************************AWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCEEDVEVDDQKVSNDKEQTCFPSYESYSSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNAVGHADESEAKKQDEKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	646	2.2.26 [Sep-21-2011]
Q7TQ20	621	DnaJ homolog subfamily C	yes	no	0.764	0.795	0.356	5e-81
Q1RMH9	621	DnaJ homolog subfamily C	yes	no	0.749	0.779	0.368	4e-79
Q99543	621	DnaJ homolog subfamily C	yes	no	0.758	0.789	0.372	6e-78
Q4R8H2	621	DnaJ homolog subfamily C	N/A	no	0.758	0.789	0.372	1e-77
P54103	621	DnaJ homolog subfamily C	yes	no	0.761	0.792	0.358	3e-77
Q6NWJ4	618	DnaJ homolog subfamily C	yes	no	0.763	0.797	0.351	3e-76
Q6P2Y3	620	DnaJ homolog subfamily C	yes	no	0.760	0.791	0.357	3e-71
Q9Y7I8	442	Zuotin OS=Schizosaccharom	yes	no	0.317	0.463	0.440	1e-42
P32527	433	Zuotin OS=Saccharomyces c	yes	no	0.292	0.436	0.417	1e-34
Q0II91	533	DnaJ homolog subfamily C	no	no	0.335	0.407	0.322	9e-19

>sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2 OS=Rattus norvegicus GN=Dnajc2 PE=2 SV=1

 Score =  302 bits (774), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 207/581 (35%), Positives = 318/581 (54%), Gaps = 87/581 (14%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           QDHYA+LGL H+RY AT+ QI+ +++   LK+HPDK+ A       E  K+   D    +
Sbjct: 87  QDHYAVLGLGHVRYKATQRQIKAAHKTMVLKHHPDKRKAA-----GEPIKEGDND----Y 137

Query: 154 FKAVQEAYEVLIDPVKRRIYDSTD-EFDDAIPADC-APQDFYKVFGPAFTRNGRWSANQL 211
           F  + +AYE+L DPVKRR ++S D  FD+++P+   A ++F++VF P F RN RWS  + 
Sbjct: 138 FTCITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKENFFQVFSPVFERNSRWSNKKN 197

Query: 212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
           VP LGD N+  ++VD FY+FWY+F SWREF + DE + E+AE RD ++W+E+QN     +
Sbjct: 198 VPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDEEEKEKAECRDERKWIEKQNRATRAQ 257

Query: 272 ARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAKYLAKKLQEE--EAARAAEE 329
            +KEE  RIRTLVDNAY  DPRI K KE  KA+K+ +K AK  A++ ++E  E  R AE 
Sbjct: 258 RKKEEMNRIRTLVDNAYSCDPRIKKFKEEGKAKKEAEKRAKAEARRKEQEAKEKQRQAEL 317

Query: 330 E--RRRKVEEEKRVAEVALQQKKVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTEDVE 387
           E  R  K +EE+ V + AL  KK KE +KK ++KER +LR  ++     H  D   + V+
Sbjct: 318 EAVRLAKEKEEEEVRQQALLAKKEKEIQKKAIKKERQKLR--NSCKNWNHFSDNEADRVK 375

Query: 388 SLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNAVGHADESEAKKQDEKKNVQQNGSVETN 447
                  ME++  LCD++E +      +++ ++     ++  +KQ E+ N       E  
Sbjct: 376 M------MEEVEKLCDRLELASLQCLNEILASSTREVGKAALEKQIEEVNELMRKEKEEA 429

Query: 448 GSTLLKSFEKKEKP----------WSKEEIELLRKGMQKYPKGTSRRWEVISEYI----- 492
            + + ++ +  EK           WS+++++LL K +  +P GT+ RWEVI+ Y+     
Sbjct: 430 DARMRQASKNAEKSTGGSGSGSKNWSEDDLQLLIKAVNLFPAGTNSRWEVIANYMNIHSS 489

Query: 493 -GTGRSVEEILKATKTVLLQKPD-------GAKAFDSFLEKRKPAQSIASPLTTREEVVG 544
            G  R+ ++++   K+  LQK D         KAFD F    K    +A           
Sbjct: 490 SGVKRTAKDVIGKAKS--LQKLDPHQKDDINKKAFDKF----KKEHGVA----------- 532

Query: 545 ASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKT 604
              PQ   +S A ++  E                       D   W+  +++ L QALKT
Sbjct: 533 ---PQA--DSAAPSERFE-------------------GPCIDSIPWTTEEQKLLEQALKT 568

Query: 605 FPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           +P  T +RWE++A AVPG+T   C +++  L E  ++KK+A
Sbjct: 569 YPVNTPERWEKIAEAVPGRTKKDCMRRYKELVEMVKAKKAA 609

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation. Specifically binds DNA sequence 5'-GTCAAGC-3'.
Rattus norvegicus (taxid: 10116)

>sp|Q1RMH9|DNJC2_BOVIN DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1

 Score =  296 bits (757), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 218/591 (36%), Positives = 317/591 (53%), Gaps = 107/591 (18%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           QDHYA+LGL H+RY AT+ QI+ +++   LK+HPDK+ A       E  K+   D    +
Sbjct: 87  QDHYAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAA-----GEPIKEGDND----Y 137

Query: 154 FKAVQEAYEVLIDPVKRRIYDSTD-EFDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQL 211
           F  + +AYE+L DPVKRR ++S D  FD+++P+    +D F++VF P F RN RWS  + 
Sbjct: 138 FTCITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFEVFSPVFERNSRWSNKKN 197

Query: 212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
           VP LGD N+  ++VD FY+FWY+F SWREF + DE + E+AE RD +RW+E+QN     +
Sbjct: 198 VPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRATRAQ 257

Query: 272 ARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAKYLAKKLQEE--EAARAAEE 329
            +KEE  RIRTLVDNAY  DPRI K KE EKA+K+ +K+AK  AK+ ++E  E  R AE 
Sbjct: 258 RKKEEMNRIRTLVDNAYSCDPRIKKFKEEEKAKKEAEKKAKADAKRKEQEAKEKQRQAEL 317

Query: 330 ERRR--KVEEEKRVAEVALQQKKVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTEDVE 387
           E  R  K +EE+ V + AL  KK K+ +KK ++KER +LR L    T  H  D   E V+
Sbjct: 318 EAARLAKEKEEEEVRQQALLAKKEKDIQKKAIKKERQKLRNLCK--TWNHFSDSEAERVK 375

Query: 388 SLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNA---VGHA-----------------DES 427
                  ME++  LCD++E S      + + ++   VG A                 +E+
Sbjct: 376 M------MEEVEKLCDRLELSSLQCLNETLTSSTKEVGKAALEKQIEEINEQIRKEKEEA 429

Query: 428 EAKKQDEKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEV 487
           EA+ +   KN +++     NGS          K WS+++++LL K +  +P GT+ RWEV
Sbjct: 430 EARMRQASKNAEKSAGGGGNGS----------KHWSEDDLQLLIKAVNLFPAGTNSRWEV 479

Query: 488 ISEYI------GTGRSVEEILKATKTVLLQKPD-------GAKAFDSFLEKRKPAQSIAS 534
           I+ Y+      G  R+ ++++   K+  LQK D         KAFD F +K       A 
Sbjct: 480 IANYMNIHSSSGVKRTAKDVIGKAKS--LQKLDPHQKDDINKKAFDKF-KKEHGVVPQAD 536

Query: 535 PLTTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQ 594
             T  E   G  T                                      D   W+  +
Sbjct: 537 NATPSERFEGPCT--------------------------------------DFTPWTTEE 558

Query: 595 ERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           ++ L QALKT+P  T +RWE++A AVPG+T   C K++  L E  ++KK+A
Sbjct: 559 QKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMVKAKKAA 609

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation. Specifically binds DNA sequence 5'-GTCAAGC-3'.

Bos taurus (taxid: 9913)

>sp|Q99543|DNJC2_HUMAN DnaJ homolog subfamily C member 2 OS=Homo sapiens GN=DNAJC2 PE=1 SV=4

 Score =  292 bits (747), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 218/585 (37%), Positives = 316/585 (54%), Gaps = 95/585 (16%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           QDHYA+LGL H+RY AT+ QI+ +++   LK+HPDK+ A       E  K+   D    +
Sbjct: 87  QDHYAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAA-----GEPIKEGDND----Y 137

Query: 154 FKAVQEAYEVLIDPVKRRIYDSTD-EFDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQL 211
           F  + +AYE+L DPVKRR ++S D  FD+++P+    +D F++VF P F RN RWS  + 
Sbjct: 138 FTCITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFEVFTPVFERNSRWSNKKN 197

Query: 212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
           VP LGD N+  ++VD FY+FWY+F SWREF + DE + E+AE RD +RW+E+QN     +
Sbjct: 198 VPKLGDMNSSFEDVDIFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRATRAQ 257

Query: 272 ARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAKYLAKKLQEE--EAARAAEE 329
            +KEE  RIRTLVDNAY  DPRI K KE EKA+K+ +K+AK  AK+ ++E  E  R AE 
Sbjct: 258 RKKEEMNRIRTLVDNAYSCDPRIKKFKEEEKAKKEAEKKAKAEAKRKEQEAKEKQRQAEL 317

Query: 330 ERRR--KVEEEKRVAEVALQQKKVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTE--- 384
           E  R  K +EE+ V + AL  KK K+ +KK ++KER +LR  ++  T  H  D   E   
Sbjct: 318 EAARLAKEKEEEEVRQQALLAKKEKDIQKKAIKKERQKLR--NSCKTWNHFSDNEAERVK 375

Query: 385 ---DVESLCMSFDMEQLRNL------CDKMEKSEGLE-QAKLIRNAV-GHADESEAKKQD 433
              +VE LC   ++  L+ L      C K      LE Q + I   +    +E+EA+ + 
Sbjct: 376 MMEEVEKLCDRLELASLQCLNETLTSCTKEVGKAALEKQIEEINEQIRKEKEEAEARMRQ 435

Query: 434 EKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYI- 492
             KN +++     NGS          K WS+++++LL K +  +P GT+ RWEVI+ Y+ 
Sbjct: 436 ASKNTEKSTGGGGNGS----------KNWSEDDLQLLIKAVNLFPAGTNSRWEVIANYMN 485

Query: 493 -----GTGRSVEEILKATKTVLLQKPD-------GAKAFDSFLEKRKPAQSIASPLTTRE 540
                G  R+ ++++   K+  LQK D         KAFD F +K       A   T  E
Sbjct: 486 IHSSSGVKRTAKDVIGKAKS--LQKLDPHQKDDINKKAFDKF-KKEHGVVPQADNATPSE 542

Query: 541 EVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQ 600
              G  T                                      D   W+  +++ L Q
Sbjct: 543 RFEGPYT--------------------------------------DFTPWTTEEQKLLEQ 564

Query: 601 ALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           ALKT+P  T +RWE++A AVPG+T   C K++  L E  ++KK+A
Sbjct: 565 ALKTYPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMVKAKKAA 609

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation. Specifically binds DNA sequence 5'-GTCAAGC-3'.

Homo sapiens (taxid: 9606)

>sp|Q4R8H2|DNJC2_MACFA DnaJ homolog subfamily C member 2 OS=Macaca fascicularis GN=DNAJC2 PE=2 SV=1

 Score =  291 bits (745), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 218/585 (37%), Positives = 320/585 (54%), Gaps = 95/585 (16%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           QDHYA+LGL H+RY AT+ QI+ +++   LK+HPDK+ A       E  K+   D    +
Sbjct: 87  QDHYAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAA-----GEPIKEGDND----Y 137

Query: 154 FKAVQEAYEVLIDPVKRRIYDSTD-EFDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQL 211
           F  + +AYE+L DPVKRR ++S D  FD+++P+    +D F++VF P F RN RWS  + 
Sbjct: 138 FTCITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFEVFSPVFERNSRWSNKKN 197

Query: 212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
           VP LGD N+  ++VD FY+FWY+F SWREF + DE + E+AE RD +RW+E+QN     +
Sbjct: 198 VPKLGDMNSSFEDVDIFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRATRAQ 257

Query: 272 ARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAKYLAKKLQEE--EAARAAEE 329
            +KEE  RIRTLVDNAY  DPRI K KE EKA+K+ +K+AK  AK+ ++E  E  R AE 
Sbjct: 258 RKKEEMNRIRTLVDNAYSCDPRIKKFKEEEKAKKEAEKKAKAEAKRKEQEAKEKQRQAEL 317

Query: 330 ERRR--KVEEEKRVAEVALQQKKVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTE--- 384
           E  R  K +EE+ V + AL  KK K+ +KK ++KER +LR  ++  T  H  D   E   
Sbjct: 318 EAARLAKEKEEEEVRQQALLAKKEKDLQKKAIKKERQKLR--NSCKTWNHFSDNEAERVK 375

Query: 385 ---DVESLCMSFDMEQLRNL------CDKMEKSEGLE-QAKLIRNAV-GHADESEAKKQD 433
              +VE LC   ++  L+ L      C K      LE Q + I   +    +E+EA  + 
Sbjct: 376 MMEEVEKLCDRLELASLQCLNETLTSCTKEVGKAALEKQIEEINEQIRKEKEEAEAHMRQ 435

Query: 434 EKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYI- 492
             KN +++     NGS          K WS+++++LL K +  +P GT+ RWEVI+ Y+ 
Sbjct: 436 ASKNTEKSAGGGGNGS----------KNWSEDDLQLLIKAVNLFPAGTNSRWEVIANYMN 485

Query: 493 -----GTGRSVEEILKATKTVLLQKPD-------GAKAFDSFLEKRKPAQSIASPLTTRE 540
                G  R+ ++++   K+  LQK D         KAFD F                +E
Sbjct: 486 IHSSSGVKRTAKDVIGKAKS--LQKLDPHQKDDINKKAFDKF---------------KKE 528

Query: 541 EVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQ 600
             V    PQ   ++ A ++  E                      +D   W+  +++ L Q
Sbjct: 529 HGV---VPQA--DNAAPSERFE-------------------GPYTDFTPWTTEEQKLLEQ 564

Query: 601 ALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           ALKT+P  T +RWE++A AVPG+T   C K++  L E  ++KK+A
Sbjct: 565 ALKTYPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMVKAKKAA 609

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation. Specifically binds DNA sequence 5'-GTCAAGC-3'.

Macaca fascicularis (taxid: 9541)

>sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1 SV=2

 Score =  290 bits (741), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 209/583 (35%), Positives = 322/583 (55%), Gaps = 91/583 (15%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           QDHYA+LGL H+RY AT+ QI+ +++   LK+HPDK+ A       E  K+   D    +
Sbjct: 87  QDHYAVLGLGHVRYTATQRQIKAAHKAMVLKHHPDKRKAA-----GEPIKEGDND----Y 137

Query: 154 FKAVQEAYEVLIDPVKRRIYDSTD-EFDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQL 211
           F  + +AYE+L DPVKRR ++S D  FD+++P+    +D F++VF P F RN RWS  + 
Sbjct: 138 FTCITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFQVFSPVFERNSRWSNKKN 197

Query: 212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
           VP LGD N+  ++VD FY+FWY+F SWREF + DE + E+AE RD ++W+E+QN     +
Sbjct: 198 VPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDEEEKEKAECRDERKWIEKQNRATRAQ 257

Query: 272 ARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAKYLAKKLQEE--EAARAAEE 329
            +KEE  RIRTLVDNAY  DPRI K KE EKA+K+ +K+AK  A++ ++E  E  R AE 
Sbjct: 258 RKKEEMNRIRTLVDNAYSCDPRIKKFKEEEKAKKEAEKKAKAEARRKEQEAKEKQRQAEL 317

Query: 330 E--RRRKVEEEKRVAEVALQQKKVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTEDVE 387
           E  R  K +EE+ V + AL  KK K+ +KK ++KER +LR    S    H  D   + V+
Sbjct: 318 EAVRLAKEKEEEEVRQQALLAKKEKDIQKKAIKKERQKLRNSCKSWN--HFSDNEADRVK 375

Query: 388 SLCMSFDMEQLRNLCDKMEKS--EGLEQAKLIRNAVGHADESEAKKQDEKKNVQQNGSVE 445
                  ME++  LCD++E +  +GL +  ++ ++     ++  +KQ E+ N Q     E
Sbjct: 376 M------MEEVEKLCDRLELASLQGLNE--ILASSTREVGKAALEKQIEEVNEQMRREKE 427

Query: 446 TNGSTLLKSFEKKEKP----------WSKEEIELLRKGMQKYPKGTSRRWEVISEYI--- 492
              + + ++ +  EK           WS+++++LL K +  +P GT+ RWEVI+ Y+   
Sbjct: 428 EADARMRQASKNAEKSTGGSGSGSKNWSEDDLQLLIKAVNLFPAGTNSRWEVIANYMNIH 487

Query: 493 ---GTGRSVEEILKATKTVLLQKPD-------GAKAFDSFLEKRKPAQSIASPLTTREEV 542
              G  R+ ++++   K+  LQK D         KAFD F    K    +AS        
Sbjct: 488 SSSGVKRTAKDVISKAKS--LQKLDPHQKDDINKKAFDKF----KKEHGVAS-------- 533

Query: 543 VGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQAL 602
                                   + S  P++      + S+     W+  +++ L QAL
Sbjct: 534 -----------------------QADSAAPSERFEGPCIDSTP----WTTEEQKLLEQAL 566

Query: 603 KTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           KT+P  T +RWE++A AVPG+T   C +++  L E  ++KK+A
Sbjct: 567 KTYPVNTPERWEKIAEAVPGRTKKDCMRRYKELVEMVKAKKAA 609

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones HSPA14 that bind to the nascent polypeptide chain. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation (By similarity). Specifically binds DNA sequence 5'-GTCAAGC-3'.

Mus musculus (taxid: 10090)

>sp|Q6NWJ4|DNJC2_DANRE DnaJ homolog subfamily C member 2 OS=Danio rerio GN=dnajc2 PE=2 SV=1

 Score =  286 bits (732), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 205/584 (35%), Positives = 326/584 (55%), Gaps = 91/584 (15%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           QDHYA+LGL+H+RY AT+ QI+ +++   LK+HPDK+ A        A +Q  + +   +
Sbjct: 84  QDHYAVLGLAHVRYKATQKQIKAAHKAMVLKHHPDKRKA--------AGEQIVEGD-NDY 134

Query: 154 FKAVQEAYEVLIDPVKRRIYDSTD-EFDDAIPADC-APQDFYKVFGPAFTRNGRWSANQL 211
           F  + +A E+L DPVKRR +DS D  FD+A+P      ++F++VF P F RN RWS  + 
Sbjct: 135 FTCITKAIEILSDPVKRRAFDSVDPTFDNAVPTKAEGKENFFEVFAPVFERNARWSVKKH 194

Query: 212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
            PSLG   +  ++VDNFY+FWY+F SWREF + DE + E+AE RD +RW+E+QN     +
Sbjct: 195 FPSLGTMESSFEDVDNFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRASRAQ 254

Query: 272 ARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAKYLAKKLQEEEAARAAEEE- 330
            +KEE  RIRTLVD AY  DPRI K KE EKA K+ +K+AK  AKK ++EE  RA +++ 
Sbjct: 255 RKKEEMNRIRTLVDTAYNADPRIKKFKEEEKARKESEKKAKVEAKKREQEEKERARQQQE 314

Query: 331 ---RRRKVEEEKRVAEVALQQKKVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTEDVE 387
              R  K ++E+   + A Q KK KE +KK ++KER +LR    +  SQ+    +  + +
Sbjct: 315 EAARLLKEQQEEAARQAAQQAKKEKEAQKKAIKKERQKLRM---TCKSQNYF--TDNEAD 369

Query: 388 SLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNAVGHADESEAKKQDEKKNVQQNGSVETN 447
           S+ M   ME++  LCD++E    L   + +  A+   ++ ++K   EK+  + N  ++  
Sbjct: 370 SVRM---MEEVEKLCDRLE----LISLQTLNEALSAGNKEQSKAALEKQVQEVNMQLQKE 422

Query: 448 GSTLLKSFE-------------KKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYI-- 492
               L++ +             +  + WS+E+++LL K +  +P GT+ RWEVI+ Y+  
Sbjct: 423 KDAELQAQQAARGSEHSSAAGGQNNRGWSEEDLQLLIKAVNLFPAGTNARWEVIANYMNQ 482

Query: 493 ----GTGRSVEEILKATKTVLLQKPD-------GAKAFDSFLEKRKPAQSIASPLTTREE 541
               G  R+ ++++   KT  LQK D         KAF+ F ++                
Sbjct: 483 HSSSGVRRTAKDVINKAKT--LQKLDPHQKDEINRKAFEKFKKEH--------------- 525

Query: 542 VVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQA 601
              ++ P  V N+                 P++    + V + S+  AW+  +++ L QA
Sbjct: 526 ---SAVPPTVDNA----------------MPSE--RFDAVGADSNAAAWTTEEQKLLEQA 564

Query: 602 LKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           LKT+P  T++RWER++ AVPG++   C K++  L E  ++KK+A
Sbjct: 565 LKTYPVSTAERWERISEAVPGRSKKDCMKRYKELVEMIKAKKAA 608

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation.

Danio rerio (taxid: 7955)

>sp|Q6P2Y3|DNJC2_XENTR DnaJ homolog subfamily C member 2 OS=Xenopus tropicalis GN=dnajc2 PE=2 SV=2

 Score =  270 bits (690), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 209/585 (35%), Positives = 321/585 (54%), Gaps = 94/585 (16%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           QDHYA+LGL +LRY AT+ QI+ +++   LK+HPDK+ A        A +Q  + +   +
Sbjct: 85  QDHYAVLGLKNLRYKATQRQIKAAHKAMVLKHHPDKRKA--------AGEQIVEGD-NDY 135

Query: 154 FKAVQEAYEVLIDPVKRRIYDSTD-EFDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQL 211
           F  + +AYE+L DP+KRR ++S D  FD++IP+    +D F+  F P F RN RWS  + 
Sbjct: 136 FTCITKAYEILSDPIKRRAFNSIDPTFDNSIPSKSEGKDNFFDAFSPVFERNSRWSNKKN 195

Query: 212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
           +P LGD N+ ++EVD FY+FWY+F SWREF + DE + E+AE RD +RW+E+QN     +
Sbjct: 196 IPKLGDMNSCIEEVDGFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRAARAQ 255

Query: 272 ARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAKYLAKKLQEEEAARAAEEE- 330
            +KEE  RIRTLVDNAY  DPRI K KE EKA K+ +K+AK  A++ ++EE  R  + E 
Sbjct: 256 RKKEEMIRIRTLVDNAYSSDPRIKKFKEEEKARKEAEKKAKADARRKEQEEKERQKQAEL 315

Query: 331 ---RRRKVEEEKRVAEVALQQKKVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTEDVE 387
              R  K +EE+   + AL  KK KE +KK ++KER RLRT     + ++    S  + E
Sbjct: 316 EAVRLAKEKEEEEARQQALLIKKEKEIQKKAIKKERQRLRT-----SCKNWNYFSDNEAE 370

Query: 388 SLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNAVGHADESEAKKQDEKKNVQQNGSV--- 444
           S+ M   ME++  LCD++E    L   + +  ++  + + E K   EK+  + N  +   
Sbjct: 371 SVKM---MEEIEKLCDRLE----LASLQSLNESLAVSSKEEGKSAVEKQIAEVNAQLKRE 423

Query: 445 -ETNGSTLLKSFEKKEKP----------WSKEEIELLRKGMQKYPKGTSRRWEVISEYI- 492
            E   + + +S +  E            WS+++++LL K +  +P GT+ RWEVI+ Y+ 
Sbjct: 424 KEQEEARMKQSTKGAENSAIGGGSGSKSWSEDDLQLLIKAVNLFPAGTNARWEVIANYMN 483

Query: 493 -----GTGRSVEEILKATKTVLLQKPD-------GAKAFDSFLEKRKPAQSIASPLTTRE 540
                G  R+ ++++   K+  LQK D         KAFD F ++ +             
Sbjct: 484 LHSISGIKRTSKDVINKAKS--LQKLDPQQKDDINKKAFDKFKKEHR------------- 528

Query: 541 EVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQ 600
                  PQ V N+           S   + PA           +D   W+  +++ L Q
Sbjct: 529 -----VVPQSVDNA---------VPSERFEGPA-----------ADMSPWTTEEQKLLEQ 563

Query: 601 ALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           ALKT+P  T +RWE++A AVPG++   C K++  L E  ++KK+A
Sbjct: 564 ALKTYPVNTPERWEKIAEAVPGRSKKDCMKRYKELVEMVKAKKAA 608

Acts both as a chaperone in the cytosol and as a chromatin regulator in the nucleus. When cytosolic, acts as a molecular chaperone: component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. When nuclear, mediates the switching from polycomb-repressed genes to an active state: specifically recruited at histone H2A ubiquitinated at 'Lys-119' (H2AK119ub), and promotes the displacement of the polycomb PRC1 complex from chromatin, thereby facilitating transcription activation.

Xenopus tropicalis (taxid: 8364)

>sp|Q9Y7I8|ZUO1_SCHPO Zuotin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zuo1 PE=1 SV=2

 Score =  174 bits (442), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/218 (44%), Positives = 134/218 (61%), Gaps = 13/218 (5%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           QQDHYA+LGLS  RY A  +QI+K++ +  LK+HPDK+AA            +     ++
Sbjct: 95  QQDHYAVLGLSKYRYKADTEQIKKAHLKKVLKHHPDKKAA------------SGNINDDS 142

Query: 153 HFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQL 211
            FK +Q+AYE+L DPV+RR +DS DE  D  P +   ++ F++++ P F    R+S  Q 
Sbjct: 143 FFKCIQKAYEILSDPVRRRQFDSVDENADVEPPESTTKETFFELWTPVFESEARFSKKQP 202

Query: 212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
           VPSLG   +   EVDNFYNFWY+F SWR F + D+   +  ESRD+KR+ E++N    +K
Sbjct: 203 VPSLGTIESTRAEVDNFYNFWYNFDSWRSFEYLDKDIPDDGESRDNKRFQEKKNRSERQK 262

Query: 272 ARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKK 309
            +  + AR+R LVD A   DPRI   KE EKA K  +K
Sbjct: 263 NKARDNARLRNLVDTALASDPRIKLFKEQEKAAKAARK 300

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32527|ZUO1_YEAST Zuotin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZUO1 PE=1 SV=1

 Score =  148 bits (374), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)

Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHF 154
           D YA +GLS LR+ ATE QI K++R+  +KYHPDKQ+A        A     +D     F
Sbjct: 97  DLYAAMGLSKLRFRATESQIIKAHRKQVVKYHPDKQSA--------AGGSLDQDGF---F 145

Query: 155 KAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQ-DFYKVFGPAFTRNGRWSANQLVP 213
           K +Q+A+E L D  KR  YDS D   D  P       DFY+ +GP F    R+S    +P
Sbjct: 146 KIIQKAFETLTDSNKRAQYDSCDFVADVPPPKKGTDYDFYEAWGPVFEAEARFSKKTPIP 205

Query: 214 SLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKAR 273
           SLG++++  KEV+ FY FW+ F SWR F   DE   + + +RDHKR++ER+N    +K +
Sbjct: 206 SLGNKDSSKKEVEQFYAFWHRFDSWRTFEFLDEDVPDDSSNRDHKRYIERKNKAARDKKK 265

Query: 274 KEEYARIRTLVDNAYKRDPRI 294
             + AR+  LV+ A   DPRI
Sbjct: 266 TADNARLVKLVERAVSEDPRI 286

Component of the ribosome-associated complex (RAC), a heterodimeric chaperone complex involved in regulation of accurate translation termination and in folding or maintaining nascent polypeptides in a folding-competent state. RAC stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones SSB1/SSB2 that bind to the nascent polypeptide chain. ZUO1 can act as a J-protein for SSB1/SSB2 only when associated with SSZ1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q0II91|DJC21_BOVIN DnaJ homolog subfamily C member 21 OS=Bos taurus GN=DNAJC21 PE=2 SV=2

 Score = 95.9 bits (237), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 131/270 (48%), Gaps = 53/270 (19%)

Query: 96  HYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFK 155
           HY  LG+   R  A+E++++K+YR+ ALK+HPDK          EAA+Q         FK
Sbjct: 4   HYEALGV---RRDASEEELKKAYRKLALKWHPDKN----LDNAAEAAEQ---------FK 47

Query: 156 AVQEAYEVLIDPVKRRIYDSTDEF-----------DDAI------PADCAP------QDF 192
            +Q AY+VL DP +R  YD+  E            DD++         C        + F
Sbjct: 48  LIQAAYDVLSDPQERAWYDNHREALLKGGLDGEYQDDSLDLLHYFTVTCYSGYGDDEKGF 107

Query: 193 YKVFGPAFTRNGRWSANQLV-------PSLGDENTPLKEVDN-FYNFWYSFKSWREFPHA 244
           Y V+   F    +      +       P+ GD  +    V + FY +W SF + + F   
Sbjct: 108 YTVYRNVFEMIAKEELESALEEDMEDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWK 167

Query: 245 DEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRK---EAE 301
           +E+D  QA +R  KR ME++N K+ +KARKE+   +R LV    KRD R+   +   E +
Sbjct: 168 EEYDTRQASNRWEKRAMEKENKKIRDKARKEKNELVRQLVAFIRKRDRRVQAHRKLVEEQ 227

Query: 302 KAEKQKKKEAKYLAKKLQEEEAARAAEEER 331
            AEK +K EA    +KL++   A+ AE+ R
Sbjct: 228 NAEKARKAEAMRRQQKLKQ---AKLAEQYR 254

May act as a co-chaperone for HSP70.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	646
224073082	647	predicted protein [Populus trichocarpa]	0.996	0.995	0.782	0.0
224057202	647	predicted protein [Populus trichocarpa]	0.996	0.995	0.768	0.0
255575774	694	Zuotin, putative [Ricinus communis] gi|2	0.995	0.926	0.777	0.0
449457039	647	PREDICTED: dnaJ homolog subfamily C memb	0.993	0.992	0.759	0.0
359472800	711	PREDICTED: dnaJ homolog subfamily C memb	0.996	0.905	0.767	0.0
356525975	637	PREDICTED: dnaJ homolog subfamily C memb	0.978	0.992	0.758	0.0
147802497	645	hypothetical protein VITISV_040643 [Viti	0.989	0.990	0.770	0.0
356543413	636	PREDICTED: dnaJ homolog subfamily C memb	0.976	0.992	0.761	0.0
357511343	653	DnaJ homolog subfamily C member [Medicag	0.986	0.975	0.713	0.0
222051766	650	gonidia forming protein GlsA [Alstroemer	0.979	0.973	0.703	0.0

>gi|224073082|ref|XP_002303963.1| predicted protein [Populus trichocarpa] gi|222841395|gb|EEE78942.1| predicted protein [Populus trichocarpa]

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/645 (78%), Positives = 567/645 (87%), Gaps = 1/645 (0%)

Query: 1   MVVHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCEED-VEV 59
           M +  S RLISYS ELVDGQP++VSSN LP+KA K+EPAGH+FH AALKLLG EE+  + 
Sbjct: 1   MAIQTSLRLISYSQELVDGQPLHVSSNGLPIKALKFEPAGHAFHTAALKLLGWEEEGTKT 60

Query: 60  DDQKVSNDKEQTCFPSYESYSSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSYR 119
           +DQKVSNDK+Q+  PS ESYS+KGKKKSG G  QQDHYALLGL HLRYLATE+QIRKSYR
Sbjct: 61  EDQKVSNDKQQSYMPSSESYSTKGKKKSGSGDTQQDHYALLGLGHLRYLATEEQIRKSYR 120

Query: 120 ETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEF 179
           E ALKYHPDKQAA+L AEE+EAAKQAKKDEIE+HFKA+QEAYE LIDPVKRRIYDSTDEF
Sbjct: 121 EVALKYHPDKQAAILLAEESEAAKQAKKDEIESHFKAIQEAYEALIDPVKRRIYDSTDEF 180

Query: 180 DDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWR 239
           DD IP DCAPQDF+KVFGPAF RNGRWS NQ VPSLGDE T LKEVD+FYNFWYSFKSWR
Sbjct: 181 DDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQTVPSLGDEKTSLKEVDSFYNFWYSFKSWR 240

Query: 240 EFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKE 299
           EFPHADEFDLE+AESRDHKRWMERQNAKL+EKARKE+YARIRTLVD+AYKRDPRIL+RKE
Sbjct: 241 EFPHADEFDLEEAESRDHKRWMERQNAKLSEKARKEDYARIRTLVDSAYKRDPRILRRKE 300

Query: 300 AEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKLL 359
            EKAEKQ+KKEAKYLAK+LQEEEAARAAEEE+R+K EEEKRVAE ALQQKK+KEKEKKLL
Sbjct: 301 EEKAEKQRKKEAKYLAKRLQEEEAARAAEEEKRQKEEEEKRVAEAALQQKKLKEKEKKLL 360

Query: 360 RKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRN 419
           RKER+RLRTLS SV SQ LL++S  DVE+LCMS D+EQLR+LCD++E  E LEQAK++R+
Sbjct: 361 RKERSRLRTLSGSVLSQCLLNLSEADVENLCMSLDIEQLRSLCDRIEGKEVLEQAKVLRD 420

Query: 420 AVGHADESEAKKQDEKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPK 479
           A G   +S + KQ+EKK  QQNGS+ +NGS+ L S  KKEKPW +EEIELLRKG QKYPK
Sbjct: 421 ACGCDHDSGSSKQEEKKISQQNGSLNSNGSSPLSSSGKKEKPWGREEIELLRKGTQKYPK 480

Query: 480 GTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTTR 539
           GTSRRWEVIS+YIGTGRSVEEILKATKTVLLQKPD AKAF+SFLEKRKPAQSI SPL+TR
Sbjct: 481 GTSRRWEVISDYIGTGRSVEEILKATKTVLLQKPDSAKAFNSFLEKRKPAQSIESPLSTR 540

Query: 540 EEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALV 599
           EE+ GAST Q +++S A+    E SS +  QK  DV  ANGVSSS+DQD WSAVQERALV
Sbjct: 541 EEIEGASTVQALESSAAKVAQEESSSDTDKQKTDDVVTANGVSSSADQDVWSAVQERALV 600

Query: 600 QALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKS 644
           QALKTFPKETSQRWERV+ AVPGKT+ QCKKKFA LKE+FR+KK+
Sbjct: 601 QALKTFPKETSQRWERVSAAVPGKTINQCKKKFALLKESFRNKKN 645

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057202|ref|XP_002299170.1| predicted protein [Populus trichocarpa] gi|222846428|gb|EEE83975.1| predicted protein [Populus trichocarpa]

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/645 (76%), Positives = 556/645 (86%), Gaps = 1/645 (0%)

Query: 1   MVVHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCEED-VEV 59
           M +  S +LISYS ELVDGQP++VSSNCLP+KA KYEPAGH++H+AALKLLG EE+  + 
Sbjct: 1   MAIQTSLQLISYSQELVDGQPVHVSSNCLPIKALKYEPAGHAYHSAALKLLGWEEEGTKS 60

Query: 60  DDQKVSNDKEQTCFPSYESYSSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSYR 119
           +DQKVS DKEQ+  PS ESYS+KGKKK+G G  QQDHYA+LGL HLRYLATE+QIRKSYR
Sbjct: 61  EDQKVSKDKEQSYMPSSESYSTKGKKKTGSGDKQQDHYAMLGLGHLRYLATEEQIRKSYR 120

Query: 120 ETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEF 179
           E ALKYHPDKQAA+L AEETEAAKQAKK+EIE+HFKA+QEAYE LIDPVKRRIYDSTDEF
Sbjct: 121 EVALKYHPDKQAAILLAEETEAAKQAKKNEIESHFKAIQEAYEALIDPVKRRIYDSTDEF 180

Query: 180 DDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWR 239
           DD IP DCAPQDF+KVFGPAF RNGRWS NQ +PSLGDENT LKEVD+FYNFWYSFKSWR
Sbjct: 181 DDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPSLGDENTSLKEVDSFYNFWYSFKSWR 240

Query: 240 EFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKE 299
           EFPHADEFDLEQAESRDHKRWMERQNAKL+EKARKE+YARIRTLVD+AYKRDPRIL+RKE
Sbjct: 241 EFPHADEFDLEQAESRDHKRWMERQNAKLSEKARKEDYARIRTLVDSAYKRDPRILRRKE 300

Query: 300 AEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKLL 359
             KAEKQ++KEAK+LAK+LQEEEAARAAEEERR+K EE KR AE ALQQKK+KEKEKKLL
Sbjct: 301 EGKAEKQRRKEAKFLAKRLQEEEAARAAEEERRQKEEEGKRAAEAALQQKKLKEKEKKLL 360

Query: 360 RKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRN 419
           RKER+RLRTLSA V  Q LL++  +DVE+LCMS D+EQLR+LCD+ME  E +EQAK++R+
Sbjct: 361 RKERSRLRTLSAPVLPQCLLNLGEDDVENLCMSLDIEQLRSLCDRMEGKEVVEQAKVLRD 420

Query: 420 AVGHADESEAKKQDEKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPK 479
           A G   +S + K  EKK  QQNGS+ +NG     S  KKEKPWS+EEIELLRKG+QKYPK
Sbjct: 421 ACGCDHDSSSSKLGEKKISQQNGSLNSNGRAPSSSSGKKEKPWSREEIELLRKGIQKYPK 480

Query: 480 GTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTTR 539
           GTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPD AKAFDSFLEKRKPAQSIASPLTTR
Sbjct: 481 GTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDTAKAFDSFLEKRKPAQSIASPLTTR 540

Query: 540 EEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALV 599
           +E+ GAS  Q  ++S A+    E S     QK  D+  ANGVSSS+DQD WSAVQERALV
Sbjct: 541 DEIQGASAMQAPESSVAKIAEEESSRDPDKQKTDDIVTANGVSSSADQDVWSAVQERALV 600

Query: 600 QALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKS 644
           QALKTFPKE SQRWERVA AVPGKT  QC+KK A LKENFR+KKS
Sbjct: 601 QALKTFPKEISQRWERVAAAVPGKTANQCRKKLALLKENFRNKKS 645

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575774|ref|XP_002528786.1| Zuotin, putative [Ricinus communis] gi|223531789|gb|EEF33608.1| Zuotin, putative [Ricinus communis]

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/648 (77%), Positives = 560/648 (86%), Gaps = 5/648 (0%)

Query: 1   MVVHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCEE-DVEV 59
           M V +  RLISYS ELVDGQP+Y+SSN LP+KA K+EPAGH+FH  A KLLGCEE DV+ 
Sbjct: 48  MAVTSRIRLISYSQELVDGQPVYLSSNSLPIKALKFEPAGHAFHTVAQKLLGCEEEDVDS 107

Query: 60  DDQKVSNDKEQTCFPSYESYSSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSYR 119
           +DQKV N+KEQ+  PS  S S   K K   G  QQDHYALLGLSHLRYLATE+QIRKSYR
Sbjct: 108 EDQKVPNEKEQSYMPS--SDSYSSKGKKKSGDKQQDHYALLGLSHLRYLATEEQIRKSYR 165

Query: 120 ETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEF 179
           E ALKYHPDKQAA+L AE TEAAKQAKKDEIE+HFKA+QEAYEVLIDP+KRRIYDS+DEF
Sbjct: 166 EVALKYHPDKQAAILLAEGTEAAKQAKKDEIESHFKAIQEAYEVLIDPIKRRIYDSSDEF 225

Query: 180 DDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWR 239
           DD IP DCAPQDF+KVFGPAF RNGRWS  Q +P LGD+NT LKEV+NFY+FWYSF+SWR
Sbjct: 226 DDEIPTDCAPQDFFKVFGPAFLRNGRWSVTQPIPPLGDDNTSLKEVENFYDFWYSFRSWR 285

Query: 240 EFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKE 299
           EFPHADEFDLEQAESR+HKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRIL+RKE
Sbjct: 286 EFPHADEFDLEQAESREHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILRRKE 345

Query: 300 AEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKLL 359
            EKAE+Q+KKEAK LAKKLQEEEAARAAEEE+RRK EEEKR AE ALQQKKVKEKEKKLL
Sbjct: 346 EEKAERQRKKEAKILAKKLQEEEAARAAEEEKRRKEEEEKRAAEAALQQKKVKEKEKKLL 405

Query: 360 RKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRN 419
           RKERTRLRTLSA + SQ +L++  EDVE+LC+S D+ QLR++C+KME  + L+QAK++ +
Sbjct: 406 RKERTRLRTLSAPILSQRMLNLCEEDVENLCLSLDILQLRDICEKMEGKQVLDQAKVLSD 465

Query: 420 AVGHADESEAKKQDEKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPK 479
           A GH  +SE+ KQ+EKK +QQNGSVE NGS  L SFEKKEKPWSKEEIELLRKGMQKYPK
Sbjct: 466 ASGHKHDSESIKQEEKKKLQQNGSVELNGSVPLSSFEKKEKPWSKEEIELLRKGMQKYPK 525

Query: 480 GTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTTR 539
           GTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPD AKAFDSFLEKRKPAQSIASPLTTR
Sbjct: 526 GTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDSAKAFDSFLEKRKPAQSIASPLTTR 585

Query: 540 EEVVGASTPQVVQNSGARTDSSEE--SSSSTSQKPADVTAANGVSSSSDQDAWSAVQERA 597
           EE+   ++ Q  ++S  + D SEE  S S+ ++ P DV A NG  SSSDQDAWSAVQERA
Sbjct: 586 EEIERVASKQGPESSATKIDGSEESFSRSANNKNPDDVIAENGGPSSSDQDAWSAVQERA 645

Query: 598 LVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           LVQALKTFPKETSQRWERVA AVPGKTV QCKKKF  LKENFR+KKSA
Sbjct: 646 LVQALKTFPKETSQRWERVAAAVPGKTVNQCKKKFTLLKENFRNKKSA 693

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457039|ref|XP_004146256.1| PREDICTED: dnaJ homolog subfamily C member 2-like [Cucumis sativus] gi|449495541|ref|XP_004159872.1| PREDICTED: dnaJ homolog subfamily C member 2-like [Cucumis sativus]

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/649 (75%), Positives = 558/649 (85%), Gaps = 7/649 (1%)

Query: 1   MVVHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCE-EDVEV 59
           M V A+ RL++YS E+VDGQPIYV+SNCLP+KA KYEPAGHSFH AALKLLG E E+V  
Sbjct: 1   MTVQANLRLLTYSQEIVDGQPIYVASNCLPIKALKYEPAGHSFHNAALKLLGWEDEEVSD 60

Query: 60  DDQKVSNDKEQTCFPSYESYSSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSYR 119
           ++++ ++D EQ   PS++SYSSKGKKKSG  + QQDHYALLGLSHLRYLATE+QIRKSYR
Sbjct: 61  ENEQAADDTEQKYAPSFDSYSSKGKKKSGGST-QQDHYALLGLSHLRYLATEEQIRKSYR 119

Query: 120 ETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEF 179
           ETALKYHPDKQAALL AEETEAAKQAKKDEIE+HFK++QEAYEVLIDPVKRRIYDSTDEF
Sbjct: 120 ETALKYHPDKQAALLLAEETEAAKQAKKDEIESHFKSIQEAYEVLIDPVKRRIYDSTDEF 179

Query: 180 DDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWR 239
           DD IP DCAPQDF+KVFGPAF RNGRWS NQ VPSLGD+ TPLK VD+FYNFWY+FKSWR
Sbjct: 180 DDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQSVPSLGDDKTPLKVVDDFYNFWYAFKSWR 239

Query: 240 EFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKE 299
           EFPHADEFDLEQAESRDHKRWMERQNAKL+EKARKEEYARIRTLVDNAYKRDPRI +RKE
Sbjct: 240 EFPHADEFDLEQAESRDHKRWMERQNAKLSEKARKEEYARIRTLVDNAYKRDPRIQRRKE 299

Query: 300 AEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKLL 359
            EKAEKQ+KKEAK+LAKKLQEEEA R AEEE+RRK EEEKR AE+A QQKK+KEKEKKLL
Sbjct: 300 EEKAEKQRKKEAKFLAKKLQEEEAVRLAEEEKRRKEEEEKRAAELAQQQKKLKEKEKKLL 359

Query: 360 RKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRN 419
           RKERTRLRTLS    SQ LLD+S EDVE+LC S D+E+LRN+CDKME  +G+E AK++R+
Sbjct: 360 RKERTRLRTLSGPAISQSLLDLSAEDVENLCSSLDIERLRNICDKMEGKKGMELAKVLRD 419

Query: 420 AVGHADESEAKKQDEKKNVQQNGSVETNGS-TLLKSFEKKEKPWSKEEIELLRKGMQKYP 478
           A    + S+ K Q+ KK  +QNGS   N + +L  S +KKE+PWSK+EIELLRKGMQKYP
Sbjct: 420 A-QECNSSDTKHQECKKTEEQNGSTTANATASLSGSLQKKERPWSKDEIELLRKGMQKYP 478

Query: 479 KGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTT 538
           KGTSRRWEVISEYIGT RSVEEILKATKT+LLQKPD AKAFDSFLEKRKPAQSIASPL+T
Sbjct: 479 KGTSRRWEVISEYIGTERSVEEILKATKTILLQKPDSAKAFDSFLEKRKPAQSIASPLST 538

Query: 539 REEVVGASTPQVVQNSG--ARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQER 596
           REE+ G S+ +   N       D S    +  +Q P++  +ANGVSSSS+QD WSAVQER
Sbjct: 539 REELEGVSSKKPEDNVAINGNLDMSSVGQNVNNQTPSN-PSANGVSSSSEQDDWSAVQER 597

Query: 597 ALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           ALVQALKTFPKET+QRWERVA AVPGKTV QCKKKF S+KENFRS+K+A
Sbjct: 598 ALVQALKTFPKETNQRWERVAAAVPGKTVNQCKKKFTSMKENFRSRKNA 646

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472800|ref|XP_002274720.2| PREDICTED: dnaJ homolog subfamily C member 2-like [Vitis vinifera]

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/649 (76%), Positives = 558/649 (85%), Gaps = 5/649 (0%)

Query: 1   MVVHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCEEDVEVD 60
           M  + S RLI+YS+ELV+GQPIYVSSNCLPLKA + EPAGH+FH+AAL++LGC E+   D
Sbjct: 63  MSANMSLRLITYSEELVNGQPIYVSSNCLPLKAFRLEPAGHAFHSAALRVLGCCEEEGED 122

Query: 61  D--QKVSNDKEQTCFPSYESYSSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSY 118
           +  Q V NDKEQ+ FPS  SYSSKGKKKSG    QQDHYALLGLSHLR+LATEDQIRKSY
Sbjct: 123 EDDQNVPNDKEQSYFPSSGSYSSKGKKKSGAEGKQQDHYALLGLSHLRFLATEDQIRKSY 182

Query: 119 RETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDE 178
           RETALK+HPDKQAAL+ AEETEAAKQAKKDEIE HFK++QEAYEVLIDPVKRRIYDSTDE
Sbjct: 183 RETALKHHPDKQAALILAEETEAAKQAKKDEIENHFKSIQEAYEVLIDPVKRRIYDSTDE 242

Query: 179 FDDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSW 238
           FDD IP DC PQDF+KVFGPAF RN RWS NQ VP+LG+ENTPLKEVD FYNFWY FKSW
Sbjct: 243 FDDEIPTDCEPQDFFKVFGPAFMRNSRWSVNQPVPTLGEENTPLKEVDMFYNFWYCFKSW 302

Query: 239 REFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRK 298
           REFPH DEFDLEQAESRDHKRWMERQNAKL+EKARKEEY RIR+L+DNAYKRDPRIL+RK
Sbjct: 303 REFPHTDEFDLEQAESRDHKRWMERQNAKLSEKARKEEYVRIRSLIDNAYKRDPRILRRK 362

Query: 299 EAEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKL 358
           E E+AEKQKK++AKYLAKKLQEEEAAR AEEERR+K EEEKR AE A  QKKVKEKEKKL
Sbjct: 363 EEERAEKQKKRQAKYLAKKLQEEEAARIAEEERRQKEEEEKRAAEAASHQKKVKEKEKKL 422

Query: 359 LRKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIR 418
           LRKERTRLRTLSA V +Q+L +++ +DVESLCMS + EQLRNLCDK+E +EGLE+ KL+R
Sbjct: 423 LRKERTRLRTLSAPVLTQNLFNITEDDVESLCMSLETEQLRNLCDKIEGAEGLERGKLLR 482

Query: 419 NAVGHADESEAKKQDEKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYP 478
           +A G   +S  KKQ E KN QQNGSVE NG+  L  +EKKEKPW +EEIELLRKGMQKYP
Sbjct: 483 DARGGNTDSTGKKQGE-KNPQQNGSVEVNGNVPLGKYEKKEKPWEREEIELLRKGMQKYP 541

Query: 479 KGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTT 538
           KGTSRRWEVISEYIGTGRSV+EILKATKTVLLQKPD  KAFDSFLEKRKPAQSIASPLTT
Sbjct: 542 KGTSRRWEVISEYIGTGRSVDEILKATKTVLLQKPDATKAFDSFLEKRKPAQSIASPLTT 601

Query: 539 REEVVGASTPQVVQNSGARTDSSEESSSSTS--QKPADVTAANGVSSSSDQDAWSAVQER 596
           REE  G       +++ +  D+ +ESSS++   Q P    A+NGV+SSS+QD WSAVQER
Sbjct: 602 REETEGVLIQNGPESNASNKDNLKESSSTSGKQQNPDGAVASNGVTSSSEQDLWSAVQER 661

Query: 597 ALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           ALVQALKTFPKET+QRWERVA AVPGKTV QCKKKFA LKE+FR+KK+A
Sbjct: 662 ALVQALKTFPKETNQRWERVAAAVPGKTVNQCKKKFALLKEHFRNKKNA 710

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525975|ref|XP_003531595.1| PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max]

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/649 (75%), Positives = 552/649 (85%), Gaps = 17/649 (2%)

Query: 1   MVVHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCEED-VEV 59
           M VH  FRLI+YS E+VDGQPI+VSSNCLP+KA K+EPAGHSFH+AALKLLG +ED  + 
Sbjct: 1   MAVHTKFRLITYSQEIVDGQPIFVSSNCLPIKALKFEPAGHSFHSAALKLLGVQEDNKDA 60

Query: 60  DDQKVSNDKEQTCFPSYESYSSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSYR 119
           DD+KV +DKEQT  PS    S   KKK+G G  QQDHYALLGL HLRYLATEDQIRKSYR
Sbjct: 61  DDKKVVDDKEQTYLPSDSYSSKS-KKKTGTGDMQQDHYALLGLGHLRYLATEDQIRKSYR 119

Query: 120 ETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEF 179
           ETAL++HPDKQAALL AEETEAAKQAKKDEIE+HFKA+QEAYEVLIDP+KRRIYDSTDEF
Sbjct: 120 ETALRFHPDKQAALLLAEETEAAKQAKKDEIESHFKAIQEAYEVLIDPLKRRIYDSTDEF 179

Query: 180 DDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWR 239
           DD IP DCAPQDF+KVFGPAF RNGRWS NQ +PSLGD+NTP+KEVDNFYNFWYSFKSWR
Sbjct: 180 DDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQSIPSLGDDNTPIKEVDNFYNFWYSFKSWR 239

Query: 240 EFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKE 299
           EFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKE+YARIRTLVDNAYKRDPRIL+RKE
Sbjct: 240 EFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEDYARIRTLVDNAYKRDPRILRRKE 299

Query: 300 AEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKLL 359
            EKAEKQ+KKEAK+LAKKLQEEEAAR AEEER+RK EEE++  E ALQQKKVKEKEKKLL
Sbjct: 300 EEKAEKQRKKEAKFLAKKLQEEEAARIAEEERQRKEEEERQATEAALQQKKVKEKEKKLL 359

Query: 360 RKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEG-LEQAKLIR 418
           RKER RLRTLS  + S HLLD+S +DVE LCMS D++QLR+LC+ M   +  LEQAK++R
Sbjct: 360 RKERARLRTLSGPILSHHLLDISDDDVERLCMSLDIQQLRSLCENMGGRQMLLEQAKVLR 419

Query: 419 NAVGHADESEAKKQDEKKNVQQ-NGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKY 477
           +A+    E      DEK N Q  NGS++ NGS  L + EKKEKPWSKEEI+LLRKGMQKY
Sbjct: 420 DALSSKKEEAV---DEKTNQQNANGSIKANGSPSLSNIEKKEKPWSKEEIDLLRKGMQKY 476

Query: 478 PKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKP-AQSIASPL 536
           PKGTSRRWEVISEYIGTGRSVEEI+KATKTVLLQKPD +KAFD+FLEKRKP AQSI SPL
Sbjct: 477 PKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKAFDTFLEKRKPGAQSIESPL 536

Query: 537 TTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQER 596
           TTREE +G   P       + T+++E+S +  +      + ANGVSSSS+QD WSAVQER
Sbjct: 537 TTREE-LGVPAP------ASSTNNAEDSQNKGTDD--QNSPANGVSSSSEQDVWSAVQER 587

Query: 597 ALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           ALVQALK FPKETSQRWERVATAVPGKTV QCKKKFA +KE+FR+KK+A
Sbjct: 588 ALVQALKAFPKETSQRWERVATAVPGKTVNQCKKKFALMKESFRNKKTA 636

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802497|emb|CAN64160.1| hypothetical protein VITISV_040643 [Vitis vinifera]

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/644 (77%), Positives = 555/644 (86%), Gaps = 5/644 (0%)

Query: 6   SFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCEEDVEVDD--QK 63
           S RLI+YS+ELV+GQPIYVSSNCLPLKA + EPAGH+FH+AAL++LGC E+   D+  Q 
Sbjct: 2   SLRLITYSEELVNGQPIYVSSNCLPLKAFRLEPAGHAFHSAALRVLGCCEEEGEDEDDQN 61

Query: 64  VSNDKEQTCFPSYESYSSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETAL 123
           V NDKEQ+ FPS  SYSSKGKKKSG    QQDHYALLGLSHLR+LATEDQIRK YRETAL
Sbjct: 62  VPNDKEQSYFPSSGSYSSKGKKKSGAEGKQQDHYALLGLSHLRFLATEDQIRKXYRETAL 121

Query: 124 KYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAI 183
           K+HPDKQAAL+ AEETEAAKQAKKDEIE HFK++QEAYEVLIDPVKRRIYDSTDEFDD I
Sbjct: 122 KHHPDKQAALILAEETEAAKQAKKDEIENHFKSIQEAYEVLIDPVKRRIYDSTDEFDDEI 181

Query: 184 PADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPH 243
           P DC PQDF+KVFGPAF RN RWS NQ VP+LG+ENTPLKEVD FYNFWY FKSWREFPH
Sbjct: 182 PTDCEPQDFFKVFGPAFMRNSRWSVNQPVPTLGEENTPLKEVDMFYNFWYCFKSWREFPH 241

Query: 244 ADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKEAEKA 303
            DEFDLEQAESRDHKRWMERQNAKL+EKARKEEY RIR+L+DNAYKRDPRIL+RKE E+A
Sbjct: 242 TDEFDLEQAESRDHKRWMERQNAKLSEKARKEEYVRIRSLIDNAYKRDPRILRRKEEERA 301

Query: 304 EKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKLLRKER 363
           EKQKK++AKYLAKKLQEEEAAR AEEERR+K EEEKR AE A  QKKVKEKEKKLLRKER
Sbjct: 302 EKQKKRQAKYLAKKLQEEEAARIAEEERRQKEEEEKRAAEAASHQKKVKEKEKKLLRKER 361

Query: 364 TRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNAVGH 423
           TRLRTLSA V +Q+L +++ +DVESLCMS + EQLRNLCDK+E +EGLE+ KL+R+A G 
Sbjct: 362 TRLRTLSAPVLTQNLFNITEDDVESLCMSLETEQLRNLCDKIEGAEGLERGKLLRDARGG 421

Query: 424 ADESEAKKQDEKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPKGTSR 483
             +S  KKQ E KN QQNGSVE NG+  L  +EKKEKPW +EEIELLRKGMQKYPKGTSR
Sbjct: 422 NTDSTGKKQGE-KNPQQNGSVEVNGNVPLGKYEKKEKPWEREEIELLRKGMQKYPKGTSR 480

Query: 484 RWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTTREEVV 543
           RWEVISEYIGTGRSV+EILKATKTVLLQKPD  KAFDSFLEKRKPAQSIASPLTTREE  
Sbjct: 481 RWEVISEYIGTGRSVDEILKATKTVLLQKPDAXKAFDSFLEKRKPAQSIASPLTTREETE 540

Query: 544 GASTPQVVQNSGARTDSSEESSSSTS--QKPADVTAANGVSSSSDQDAWSAVQERALVQA 601
           G       +++ +  D+ +ESSS++   Q P    A+NGV+SSS+QD WSAVQERALVQA
Sbjct: 541 GVLIQNGPESNASNKDNLKESSSTSGKQQNPDGAVASNGVTSSSEQDLWSAVQERALVQA 600

Query: 602 LKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           LKTFPKET+QRWERVA AVPGKTV QCKKKFA LKE+FR+KK+A
Sbjct: 601 LKTFPKETNQRWERVAAAVPGKTVNQCKKKFALLKEHFRNKKNA 644

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543413|ref|XP_003540155.1| PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max]

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/649 (76%), Positives = 543/649 (83%), Gaps = 18/649 (2%)

Query: 1   MVVHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCEEDVEVD 60
           M VH  F LI+YS E+VDGQPI+VSSNCLP+KA K+EPAGHSFH+AALKLLG +ED    
Sbjct: 1   MAVHTEFPLITYSQEIVDGQPIFVSSNCLPIKALKFEPAGHSFHSAALKLLGVQEDNNDA 60

Query: 61  DQKVSNDK-EQTCFPSYESYSSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSYR 119
           D K   D  EQT  PS    SSK KKKSG G  QQDHYALLGL HLRYLATEDQIRKSYR
Sbjct: 61  DDKKVVDDKEQTYLPSDSY-SSKSKKKSGTGDKQQDHYALLGLGHLRYLATEDQIRKSYR 119

Query: 120 ETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEF 179
           ETAL++HPDKQAALL AEETEAAKQ KKDEIE+HFKA+QEAYEVLIDPVKRRIYDSTDEF
Sbjct: 120 ETALRFHPDKQAALLLAEETEAAKQTKKDEIESHFKAIQEAYEVLIDPVKRRIYDSTDEF 179

Query: 180 DDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWR 239
           DD IP DCAPQDF+KVFGPAF RNGRWS NQ +PSLGD+NTPLKEVDNFYNFWYSFKSWR
Sbjct: 180 DDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPSLGDDNTPLKEVDNFYNFWYSFKSWR 239

Query: 240 EFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKE 299
           EFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKE+YARIRTLVDNAYKRDPRIL+RKE
Sbjct: 240 EFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEDYARIRTLVDNAYKRDPRILRRKE 299

Query: 300 AEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKLL 359
            EKAEKQ+KKEAK+LAKK+QEEEAAR AEEER+RK EEE++ A+ ALQQKKVKEKEKKLL
Sbjct: 300 EEKAEKQRKKEAKFLAKKVQEEEAARIAEEERQRKEEEERQAAKAALQQKKVKEKEKKLL 359

Query: 360 RKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEG-LEQAKLIR 418
           RKER RLRTLS  +  QHLLD+S +DVE LCMS D+EQLR+LC+ ME  +  LEQAK++R
Sbjct: 360 RKERARLRTLSGPILLQHLLDISDDDVERLCMSLDIEQLRSLCENMEGRQMLLEQAKVLR 419

Query: 419 NAVGHADESEAKKQDEKKNVQQ-NGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKY 477
            A+    E      DEK N Q  NGS++ NG + L + EKKEKPWSKEEI+LLRKGMQKY
Sbjct: 420 YALSSKKEEVV---DEKTNQQNANGSIKANGISSLSNIEKKEKPWSKEEIDLLRKGMQKY 476

Query: 478 PKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKP-AQSIASPL 536
           PKGTSRRWEVISEYIGTGRSVEEI+KATKTVLLQKPD +KAFD+FLEKRKP AQSI SPL
Sbjct: 477 PKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKAFDTFLEKRKPGAQSIESPL 536

Query: 537 TTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQER 596
           TTREE +G   P    N     + S+  S+     P     ANGVSSSS+QD WSAVQER
Sbjct: 537 TTREE-LGVPAPASTNN----VEDSQNKSTDNQNSP-----ANGVSSSSEQDVWSAVQER 586

Query: 597 ALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           ALVQALK FPKETSQRWERVATAVPGKTV QCKKKFA +KE+FR+KKSA
Sbjct: 587 ALVQALKVFPKETSQRWERVATAVPGKTVNQCKKKFALMKESFRNKKSA 635

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511343|ref|XP_003625960.1| DnaJ homolog subfamily C member [Medicago truncatula] gi|355500975|gb|AES82178.1| DnaJ homolog subfamily C member [Medicago truncatula]

 Score =  849 bits (2193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/660 (71%), Positives = 545/660 (82%), Gaps = 23/660 (3%)

Query: 1   MVVHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGC--EEDVE 58
           M VH   RLI+YS ELVDGQPI+VSSNCLP+KA KY+PAGHSFHAAALKLLG   +++ +
Sbjct: 1   MSVHTKHRLITYSQELVDGQPIFVSSNCLPVKAVKYDPAGHSFHAAALKLLGVTKQDNKD 60

Query: 59  VDDQKVSNDKEQTCFPSYESYSSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSY 118
           VD + V  DKE    PS    S+K KKKSG+G  QQDHYALLGLSHLRYLATEDQIRKSY
Sbjct: 61  VDKKNVVEDKEHVYLPSDSY-SNKSKKKSGDGDKQQDHYALLGLSHLRYLATEDQIRKSY 119

Query: 119 RETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDE 178
            +T+L++HPDKQAA + +E+TEAAK+AKK EI+ HFKA+QEAY VL+DPVKRRIYDSTDE
Sbjct: 120 HKTSLRFHPDKQAAAVLSEQTEAAKEAKKIEIDVHFKAIQEAYAVLVDPVKRRIYDSTDE 179

Query: 179 FDDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSW 238
           FDD IP DC PQDFYKVFGPAF RNGRWS NQ +PSLGD+ + +KEVD+FYNFWYSFKSW
Sbjct: 180 FDDEIPTDCDPQDFYKVFGPAFMRNGRWSVNQPIPSLGDDKSSIKEVDSFYNFWYSFKSW 239

Query: 239 REFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRK 298
           REFP ADEFDLEQAESRDHKRWMERQNAKL+EKARKEEYARIRTLVDNAYKRDPRIL+RK
Sbjct: 240 REFPQADEFDLEQAESRDHKRWMERQNAKLSEKARKEEYARIRTLVDNAYKRDPRILRRK 299

Query: 299 EAEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKL 358
           E  KAEK++KKE+KY+ K+L+EEEAAR AEEE++RK EE+K+ AE ALQQKKVKEKEKKL
Sbjct: 300 EEAKAEKKRKKESKYMEKRLEEEEAARIAEEEKQRKTEEDKKAAEAALQQKKVKEKEKKL 359

Query: 359 LRKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIR 418
           LRKERTRLRTLS  + SQH+LD++ +DVE LCMSFD+EQLR LC+KME  E LEQA+ +R
Sbjct: 360 LRKERTRLRTLSRPILSQHILDIAEDDVEELCMSFDIEQLRGLCEKMEGKEVLEQAEALR 419

Query: 419 NAVGHADESEAKKQ--DEKKNVQQNGSVETNG--STLLKSFEKKEKPWSKEEIELLRKGM 474
           +A+        KK   DEK N QQNGSV+ NG  S+L    EKKEKPW+KEEIELLRKG+
Sbjct: 420 DALS------CKKDVVDEKSN-QQNGSVKVNGSSSSLAGYVEKKEKPWTKEEIELLRKGI 472

Query: 475 QKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKP-AQSIA 533
           QK+PKGTSRRWEV+SEYIGTGRSVEEI+KATKTVLLQKPD AKAFD+FLEKRKP AQSIA
Sbjct: 473 QKFPKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPDTAKAFDTFLEKRKPAAQSIA 532

Query: 534 SPLTTREEVVGASTP-QVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSS-------S 585
           SPL+TREE+ G S P    +NS A+T ++  + + T+            S +       S
Sbjct: 533 SPLSTREELEGVSIPAATTENSDAKTTTTIPTPTMTTTTIPTPVPTATSSINSEDSQGVS 592

Query: 586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           +Q+AWSAVQERALVQALKTFPKE +QRWERVA AVPGKTVIQCKKKFA +KENFR+KK+A
Sbjct: 593 EQEAWSAVQERALVQALKTFPKEANQRWERVAAAVPGKTVIQCKKKFAVMKENFRNKKTA 652

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222051766|dbj|BAH15356.1| gonidia forming protein GlsA [Alstroemeria aurea]

 Score =  822 bits (2124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/661 (70%), Positives = 536/661 (81%), Gaps = 28/661 (4%)

Query: 1   MVVHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGC-EEDVEV 59
           M    S  LI+YS E+++G+PI+ SSNCLP+K    EPAGHSFHAAALKLLG  EE+ + 
Sbjct: 1   MDAQKSCLLITYSPEILNGEPIFFSSNCLPVKTLNLEPAGHSFHAAALKLLGFFEEESDT 60

Query: 60  DDQKV-SNDKEQTCFPSYESYSSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSY 118
           DDQ V S+D+      S +SYSSKGKKKS  G+ QQDHYALLGL HLR+LATE+QI+KSY
Sbjct: 61  DDQSVLSDDRGPAYMASSDSYSSKGKKKSSAGTQQQDHYALLGLGHLRFLATEEQIKKSY 120

Query: 119 RETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDE 178
           RETALK+HPDKQA+LL AEETE AKQAKKDEIE HFK++QEAYEVLIDPVKRRIYDSTDE
Sbjct: 121 RETALKHHPDKQASLLLAEETEEAKQAKKDEIENHFKSIQEAYEVLIDPVKRRIYDSTDE 180

Query: 179 FDDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSW 238
           FDD IP DCAPQDF+KVFGPAF RNGRWS N+ VPSLGD+NTPL++VDNFYNFWY++KSW
Sbjct: 181 FDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNESVPSLGDDNTPLEDVDNFYNFWYTYKSW 240

Query: 239 REFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRK 298
           REFPHAD+ D+EQAE+RDHKRWMERQNAKL EKA+KEEYARIR LVDNAYKRDPRIL+RK
Sbjct: 241 REFPHADDHDVEQAEARDHKRWMERQNAKLREKAKKEEYARIRALVDNAYKRDPRILRRK 300

Query: 299 EAEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKL 358
           E EKAEKQ++KEAKYLAKKLQEEEAARAAEEERRRK E++K  A  AL QKK+KEKEKKL
Sbjct: 301 EEEKAEKQRRKEAKYLAKKLQEEEAARAAEEERRRKEEDDKIAAAAALNQKKLKEKEKKL 360

Query: 359 LRKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIR 418
           LRKERTRLRTLSASV S    D+S EDVE LCMS +M+QLR+LCD M+  E  E+A L++
Sbjct: 361 LRKERTRLRTLSASVISSSSTDLSEEDVEKLCMSLEMDQLRHLCDDMQVKEASERACLLK 420

Query: 419 NAVGHADESEAKKQDEKKNVQQNG----SVETNGS-------TLLKSFEKKEKPWSKEEI 467
           +++       AK+  +  N+Q NG     ++ NG+        +  S+EKKEKPW KEEI
Sbjct: 421 DSLSGETPYSAKQ--DGTNLQSNGCQDSGLKPNGAAAEVRSKNISSSYEKKEKPWVKEEI 478

Query: 468 ELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRK 527
           E+LRKGM KYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPD AKAFDSFLEKRK
Sbjct: 479 EMLRKGMNKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDSAKAFDSFLEKRK 538

Query: 528 PAQSIASPLTTREEVVGASTPQVVQNSGARTDSSEES---SSSTSQKPADVTAANGVSSS 584
           PA +IASPLTTR   +    P V   SG + +SS+ +   SSS++  P     +NGV S 
Sbjct: 539 PAPTIASPLTTR---IDTEVPIV---SGVKDESSKSTVDQSSSSNGTP----ISNGVPSV 588

Query: 585 SDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKS 644
            +QDAWSA QERALVQALKTFPKET+QRWERVA A+PGKTV QCKKKF  +KENFRSKK+
Sbjct: 589 PEQDAWSATQERALVQALKTFPKETNQRWERVAAAIPGKTVNQCKKKFTMMKENFRSKKN 648

Query: 645 A 645
           A
Sbjct: 649 A 649

Source: Alstroemeria aurea

Species: Alstroemeria aurea

Genus: Alstroemeria

Family: Alstroemeriaceae

Order: Liliales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	646
TAIR|locus:2152835	663	AT5G06110 [Arabidopsis thalian	0.447	0.435	0.594	2.8e-174
UNIPROTKB|Q6P2Y3	620	dnajc2 "DnaJ homolog subfamily	0.297	0.309	0.467	2.4e-75
ZFIN|ZDB-GENE-040426-1912	618	dnajc2 "DnaJ (Hsp40) homolog,	0.297	0.310	0.463	1.2e-69
DICTYBASE|DDB_G0278179	634	DDB_G0278179 "DNAJ heat shock	0.287	0.293	0.46	6.1e-64
UNIPROTKB|Q1RMH9	621	DNAJC2 "DnaJ homolog subfamily	0.297	0.309	0.472	1.3e-63
UNIPROTKB|F1P3V8	621	DNAJC2 "Uncharacterized protei	0.297	0.309	0.467	1.3e-63
UNIPROTKB|E2RS54	627	DNAJC2 "Uncharacterized protei	0.297	0.306	0.472	6.9e-63
UNIPROTKB|F1SB54	621	DNAJC2 "Uncharacterized protei	0.297	0.309	0.472	8.8e-63
WB|WBGene00001029	589	dnj-11 [Caenorhabditis elegans	0.294	0.322	0.443	2.3e-62
UNIPROTKB|Q4R8H2	621	DNAJC2 "DnaJ homolog subfamily	0.297	0.309	0.472	2.9e-62

TAIR|locus:2152835 AT5G06110 [Arabidopsis thaliana (taxid:3702)]

 Score = 921 (329.3 bits), Expect = 2.8e-174, Sum P(2) = 2.8e-174
 Identities = 176/296 (59%), Positives = 212/296 (71%)

Query:     3 VHASFRLISYSDELVDGQPIYVSSNCLPLKASKYEPAGHSFHAAALKLLGCEEDV----E 58
             ++++ +L++YS EL DGQ +Y SSNC P+KA   EPAGH+FH+AALKL GC ++     E
Sbjct:     6 INSAIKLLTYSSELKDGQALYASSNCHPVKALNREPAGHAFHSAALKLRGCAKEATSKNE 65

Query:    59 VDDQKVSNDKEQTCFPXXXXXXXXXXXXXXXXXNQQDHYALLGLSHLRYLATEDQIRKSY 118
               D+KV  +K+    P                  Q DHYALLGL +LRYLAT+DQIRKSY
Sbjct:    66 DTDKKVPKEKDGEYIPSYDSHNIKGKKKSGKL--QHDHYALLGLGNLRYLATDDQIRKSY 123

Query:   119 RETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHFKAVQEAYEVLIDPVKRRIYDSTDE 178
             R+ ALK+HPDK                    IE+HFK +QEAYEVL+D  KRRI+DSTDE
Sbjct:   124 RDAALKHHPDKLATLLLLEETEEAKQAKKDEIESHFKLIQEAYEVLMDSTKRRIFDSTDE 183

Query:   179 FDDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSW 238
             FDD +P DCAPQDF+KVFGPAF RN RWS N  +P LGDENTPLKEVD FY+ WY+FKSW
Sbjct:   184 FDDKVPTDCAPQDFFKVFGPAFKRNARWS-NSPLPDLGDENTPLKEVDRFYSTWYTFKSW 242

Query:   239 REFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRI 294
             REFP  +E D+EQAESR+ KRWMER+NA+ T+KARKEEYARIRTLVDNAYK+D RI
Sbjct:   243 REFPEEEEHDIEQAESREEKRWMERENARKTQKARKEEYARIRTLVDNAYKKDIRI 298

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|Q6P2Y3 dnajc2 "DnaJ homolog subfamily C member 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 493 (178.6 bits), Expect = 2.4e-75, Sum P(3) = 2.4e-75
 Identities = 95/203 (46%), Positives = 131/203 (64%)

Query:    94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
             QDHYA+LGL +LRY AT+ QI+ +++   LK+HPDK+                      +
Sbjct:    85 QDHYAVLGLKNLRYKATQRQIKAAHKAMVLKHHPDKRKAAGEQIVEGD---------NDY 135

Query:   154 FKAVQEAYEVLIDPVKRRIYDSTDE-FDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQL 211
             F  + +AYE+L DP+KRR ++S D  FD++IP+    +D F+  F P F RN RWS  + 
Sbjct:   136 FTCITKAYEILSDPIKRRAFNSIDPTFDNSIPSKSEGKDNFFDAFSPVFERNSRWSNKKN 195

Query:   212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
             +P LGD N+ ++EVD FY+FWY+F SWREF + DE + E+AE RD +RW+E+QN     +
Sbjct:   196 IPKLGDMNSCIEEVDGFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRAARAQ 255

Query:   272 ARKEEYARIRTLVDNAYKRDPRI 294
              +KEE  RIRTLVDNAY  DPRI
Sbjct:   256 RKKEEMIRIRTLVDNAYSSDPRI 278

GO:0003682 "chromatin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0043130 "ubiquitin binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

ZFIN|ZDB-GENE-040426-1912 dnajc2 "DnaJ (Hsp40) homolog, subfamily C, member 2" [Danio rerio (taxid:7955)]

 Score = 488 (176.8 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
 Identities = 94/203 (46%), Positives = 129/203 (63%)

Query:    94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
             QDHYA+LGL+H+RY AT+ QI+ +++   LK+HPDK+                      +
Sbjct:    84 QDHYAVLGLAHVRYKATQKQIKAAHKAMVLKHHPDKRKAAGEQIVEGD---------NDY 134

Query:   154 FKAVQEAYEVLIDPVKRRIYDSTDE-FDDAIPADC-APQDFYKVFGPAFTRNGRWSANQL 211
             F  + +A E+L DPVKRR +DS D  FD+A+P      ++F++VF P F RN RWS  + 
Sbjct:   135 FTCITKAIEILSDPVKRRAFDSVDPTFDNAVPTKAEGKENFFEVFAPVFERNARWSVKKH 194

Query:   212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
              PSLG   +  ++VDNFY+FWY+F SWREF + DE + E+AE RD +RW+E+QN     +
Sbjct:   195 FPSLGTMESSFEDVDNFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRASRAQ 254

Query:   272 ARKEEYARIRTLVDNAYKRDPRI 294
              +KEE  RIRTLVD AY  DPRI
Sbjct:   255 RKKEEMNRIRTLVDTAYNADPRI 277

GO:0003682 "chromatin binding" evidence=IEA;ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0042393 "histone binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0043130 "ubiquitin binding" evidence=ISS

GO:0016568 "chromatin modification" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0278179 DDB_G0278179 "DNAJ heat shock N-terminal domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 453 (164.5 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
 Identities = 92/200 (46%), Positives = 123/200 (61%)

Query:    95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHF 154
             +HY ++GL HLR+ AT++ I+ +Y++  L  HPDK                     +  F
Sbjct:   104 NHYKIMGLDHLRWRATDNDIKLAYKKMILVVHPDKNQDLGGN--------------DEAF 149

Query:   155 KAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQDFYKVFGPAFTRNGRWSANQLVPS 214
             KA+ ++  +L D  KRR YDSTD FDD IP      DF++++ P F  N RWS  Q VP 
Sbjct:   150 KALVKSNNILSDIKKRRAYDSTDPFDDDIPTADEEGDFFEIYEPVFDSNSRWSNVQPVPK 209

Query:   215 LGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARK 274
             LGD +TP  +V  FYNFW+SFKSWR+F   D+ DL+ A+SR+ KRWMER+N K   K RK
Sbjct:   210 LGDMDTPYDKVVKFYNFWWSFKSWRDFTFEDDHDLDNADSREEKRWMERENEKKRVKQRK 269

Query:   275 EEYARIRTLVDNAYKRDPRI 294
              E ARI+ L + AYK+DPRI
Sbjct:   270 IEAARIQDLANLAYKKDPRI 289

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q1RMH9 DNAJC2 "DnaJ homolog subfamily C member 2" [Bos taurus (taxid:9913)]

 Score = 495 (179.3 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
 Identities = 96/203 (47%), Positives = 132/203 (65%)

Query:    94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
             QDHYA+LGL H+RY AT+ QI+ +++   LK+HPDK+                      +
Sbjct:    87 QDHYAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGD---------NDY 137

Query:   154 FKAVQEAYEVLIDPVKRRIYDSTDE-FDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQL 211
             F  + +AYE+L DPVKRR ++S D  FD+++P+    +D F++VF P F RN RWS  + 
Sbjct:   138 FTCITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFEVFSPVFERNSRWSNKKN 197

Query:   212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
             VP LGD N+  ++VD FY+FWY+F SWREF + DE + E+AE RD +RW+E+QN     +
Sbjct:   198 VPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRATRAQ 257

Query:   272 ARKEEYARIRTLVDNAYKRDPRI 294
              +KEE  RIRTLVDNAY  DPRI
Sbjct:   258 RKKEEMNRIRTLVDNAYSCDPRI 280

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0043130 "ubiquitin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0031965 "nuclear membrane" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1P3V8 DNAJC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 488 (176.8 bits), Expect = 1.3e-63, Sum P(3) = 1.3e-63
 Identities = 95/203 (46%), Positives = 131/203 (64%)

Query:    94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
             QDHYA+LGL ++RY AT+ QI+ +++   LK+HPDK+                      +
Sbjct:    87 QDHYAVLGLGNIRYRATQKQIKAAHKSMVLKHHPDKRKAAGEQIGEGD---------NDY 137

Query:   154 FKAVQEAYEVLIDPVKRRIYDSTDE-FDDAIPADC-APQDFYKVFGPAFTRNGRWSANQL 211
             F  + +AYE+L DPVKRR ++S D  FD+++P+   A ++F++VF P F RN RWS  + 
Sbjct:   138 FTCITKAYEILSDPVKRRAFNSIDPTFDNSVPSKSEAKENFFEVFSPVFERNARWSNKKN 197

Query:   212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
             VP LGD N+  +EVD FY+FWY+F SWREF + DE + E+AE RD +RW+E+QN      
Sbjct:   198 VPKLGDVNSSFEEVDAFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRAARAL 257

Query:   272 ARKEEYARIRTLVDNAYKRDPRI 294
              +KEE  RIR LVDNAY  DPRI
Sbjct:   258 RKKEEMNRIRILVDNAYSCDPRI 280

GO:0003677 "DNA binding" evidence=IEA

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E2RS54 DNAJC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 496 (179.7 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
 Identities = 96/203 (47%), Positives = 132/203 (65%)

Query:    94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
             QDHYA+LGL H+RY AT+ QI+ +++   LK+HPDK+                      +
Sbjct:    93 QDHYAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGD---------NDY 143

Query:   154 FKAVQEAYEVLIDPVKRRIYDSTDE-FDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQL 211
             F  + +AYE+L DPVKRR ++S D  FD+++P+    +D F++VF P F RN RWS  + 
Sbjct:   144 FTCITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFEVFSPVFERNSRWSNKKS 203

Query:   212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
             VP LGD N+  ++VD FY+FWY+F SWREF + DE + E+AE RD +RW+E+QN     +
Sbjct:   204 VPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRATRAQ 263

Query:   272 ARKEEYARIRTLVDNAYKRDPRI 294
              +KEE  RIRTLVDNAY  DPRI
Sbjct:   264 RKKEEMNRIRTLVDNAYSCDPRI 286

GO:0005634 "nucleus" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1SB54 DNAJC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 495 (179.3 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
 Identities = 96/203 (47%), Positives = 132/203 (65%)

Query:    94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
             QDHYA+LGL H+RY AT+ QI+ +++   LK+HPDK+                      +
Sbjct:    87 QDHYAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGD---------NDY 137

Query:   154 FKAVQEAYEVLIDPVKRRIYDSTDE-FDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQL 211
             F  + +AYE+L DPVKRR ++S D  FD+++P+    +D F++VF P F RN RWS  + 
Sbjct:   138 FTCITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFEVFSPVFERNSRWSNKKN 197

Query:   212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
             VP LGD N+  ++VD FY+FWY+F SWREF + DE + E+AE RD +RW+E+QN     +
Sbjct:   198 VPKLGDMNSSFEDVDAFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRATRAQ 257

Query:   272 ARKEEYARIRTLVDNAYKRDPRI 294
              +KEE  RIRTLVDNAY  DPRI
Sbjct:   258 RKKEEMNRIRTLVDNAYSCDPRI 280

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

WB|WBGene00001029 dnj-11 [Caenorhabditis elegans (taxid:6239)]

 Score = 415 (151.1 bits), Expect = 2.3e-62, Sum P(3) = 2.3e-62
 Identities = 91/205 (44%), Positives = 123/205 (60%)

Query:    94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
             QDHY +LGLS LR+ AT D+IR  YR+  LK+HPDK+                    E +
Sbjct:    97 QDHYKVLGLSKLRWQATSDEIRFCYRQKVLKHHPDKKKHRGIVMEK-----------EEY 145

Query:   154 FKAVQEAYE-VLIDPVKRRIYDSTD-EFDDAIPADCA--PQDFYKVFGPAFTRNGRWSAN 209
             F  + +AYE V +  VKR+ +DS D +F+D IP + +    +FY    P F  N RWS  
Sbjct:   146 FTCITKAYEQVGMSDVKRQAFDSVDHKFNDIIPNEKSINHNNFYNELAPVFQLNSRWSNI 205

Query:   210 QLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLT 269
             + VP LG  +   ++V+NFY+FW++F+SWREF + DE D E+ E R  +R ME+QN    
Sbjct:   206 KPVPELGKSDATREDVENFYDFWFNFQSWREFSYLDEEDKERGEDRYERREMEKQNKAER 265

Query:   270 EKARKEEYARIRTLVDNAYKRDPRI 294
             E+ RKEE  RIR LVD AY +DPRI
Sbjct:   266 ERRRKEEAKRIRKLVDIAYAKDPRI 290

GO:0003682 "chromatin binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q4R8H2 DNAJC2 "DnaJ homolog subfamily C member 2" [Macaca fascicularis (taxid:9541)]

 Score = 494 (179.0 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
 Identities = 96/203 (47%), Positives = 132/203 (65%)

Query:    94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
             QDHYA+LGL H+RY AT+ QI+ +++   LK+HPDK+                      +
Sbjct:    87 QDHYAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGD---------NDY 137

Query:   154 FKAVQEAYEVLIDPVKRRIYDSTDE-FDDAIPADCAPQD-FYKVFGPAFTRNGRWSANQL 211
             F  + +AYE+L DPVKRR ++S D  FD+++P+    +D F++VF P F RN RWS  + 
Sbjct:   138 FTCITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFEVFSPVFERNSRWSNKKN 197

Query:   212 VPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEK 271
             VP LGD N+  ++VD FY+FWY+F SWREF + DE + E+AE RD +RW+E+QN     +
Sbjct:   198 VPKLGDMNSSFEDVDIFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRATRAQ 257

Query:   272 ARKEEYARIRTLVDNAYKRDPRI 294
              +KEE  RIRTLVDNAY  DPRI
Sbjct:   258 RKKEEMNRIRTLVDNAYSCDPRI 280

GO:0003682 "chromatin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0043130 "ubiquitin binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031749 hypothetical protein (648 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	646
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	2e-53
pfam00226	63	pfam00226, DnaJ, DnaJ domain	2e-16
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	6e-16
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	3e-14
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	4e-14
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	6e-13
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	2e-12
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	3e-12
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	3e-12
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	6e-12
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	7e-12
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-11
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	4e-11
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	5e-11
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	7e-11
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	7e-11
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	1e-10
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	3e-10
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	5e-10
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-09
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	3e-09
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-09
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	3e-09
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	4e-09
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	5e-09
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	1e-08
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	1e-08
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-08
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	5e-08
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	2e-07
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	2e-07
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	2e-06
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	4e-06
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	6e-06
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	1e-05
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	1e-05
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	2e-05
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	5e-05
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	8e-05
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	9e-05
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-04
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-04
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-04
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	2e-04
PRK03578	176	PRK03578, hscB, co-chaperone HscB; Provisional	3e-04
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-04
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	4e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.001
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	0.001
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	0.001
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.002
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.003

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score =  187 bits (476), Expect = 2e-53
 Identities = 105/277 (37%), Positives = 146/277 (52%), Gaps = 15/277 (5%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           + D YALLGLS  R  A   QI K++++   KYHPDK AA       E            
Sbjct: 42  KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEF----------- 90

Query: 153 HFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPAD--CAPQDFYKVFGPAFTRNGRWSANQ 210
            FK +Q+A EVL D   R  YDS D FD  +P      P +F++V+ P F R  R+S  Q
Sbjct: 91  -FKLIQKAREVLGDRKLRLQYDSND-FDADVPPPRIYTPDEFFEVWEPVFEREARFSKKQ 148

Query: 211 LVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTE 270
            VPSLG  ++ LKEV+ FY FW +F SWR F   DE   +  E RD KR+ E +N +   
Sbjct: 149 PVPSLGPSDSSLKEVEEFYEFWSNFDSWRTFEPLDEDYPDDMEERDRKRYSEAKNREKRA 208

Query: 271 KARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAKYLAKKLQEEEAARAAEEE 330
           K + ++ AR++ LV  A KRDPRI   KE EK  K+ +K  +    +L+   A +   E 
Sbjct: 209 KLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEA 268

Query: 331 RRRKVEEEKRVAEVALQQKKVKEKEKKLLRKERTRLR 367
           + +   E + +A     +KK KE  KK L+ E+  ++
Sbjct: 269 KNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIK 305

Length = 379

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 17/80 (21%)

Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHF 154
           D+Y +LG+      A++++I+K+YR+ ALKYHPDK        +  A ++         F
Sbjct: 1   DYYEILGVPRD---ASDEEIKKAYRKLALKYHPDK-----NPGDPAAEEK---------F 43

Query: 155 KAVQEAYEVLIDPVKRRIYD 174
           K + EAYEVL DP KR IYD
Sbjct: 44  KEINEAYEVLSDPEKRAIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 79.6 bits (197), Expect = 6e-16
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 18/80 (22%)

Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHF 154
           D+Y +LG+S     A+E++I+K+YR+ A KYHPD+                K  E E  F
Sbjct: 1   DYYEILGVSKD---ASEEEIKKAYRKLAKKYHPDRN---------------KDKEAEEKF 42

Query: 155 KAVQEAYEVLIDPVKRRIYD 174
           K + EAYEVL DP KR  YD
Sbjct: 43  KEINEAYEVLSDPEKRAQYD 62

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 74.6 bits (184), Expect = 3e-14
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 17/81 (20%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           +D+Y +LG+S     A+E++I+K+YR+ A KYHPD+          + A        E  
Sbjct: 4   RDYYEILGVSKD---ASEEEIKKAYRKLAKKYHPDR------NPGDKEA--------EEK 46

Query: 154 FKAVQEAYEVLIDPVKRRIYD 174
           FK + EAYEVL DP KR  YD
Sbjct: 47  FKEINEAYEVLSDPEKRAAYD 67

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 74.0 bits (183), Expect = 4e-14
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 17/82 (20%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           ++D+Y +LG+S     A+ED+I+K+YR+ A+KYHPD+        + EA         E 
Sbjct: 3   KRDYYEVLGVSRN---ASEDEIKKAYRKLAMKYHPDRNP-----GDKEA---------EE 45

Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
            FK ++EAYEVL DP KR  YD
Sbjct: 46  KFKEIKEAYEVLSDPQKRAAYD 67

Length = 371

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 70.3 bits (172), Expect = 6e-13
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 16/87 (18%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           +D+Y +LG+      A+++ I+K++RE A K+HPD                  K E E  
Sbjct: 3   KDYYKILGVDRN---ASQEDIKKAFRELAKKWHPD-------------LHPGNKAEAEEK 46

Query: 154 FKAVQEAYEVLIDPVKRRIYDSTDEFD 180
           FK + EAYEVL DP KRR YD T   D
Sbjct: 47  FKEISEAYEVLSDPQKRRQYDQTGTVD 73

Length = 365

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 18/80 (22%)

Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHF 154
           D+Y LLG+S     A++ +I+++YR+ A + HPD           E A Q K       F
Sbjct: 4   DYYGLLGVSRN---ASDAEIKRAYRKLARELHPD-------VNPDEEA-QEK-------F 45

Query: 155 KAVQEAYEVLIDPVKRRIYD 174
           K +  AYEVL DP KRRI D
Sbjct: 46  KEISVAYEVLSDPEKRRIVD 65

Length = 378

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 16/76 (21%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
            D+Y +LG+      A+ D+I+K+YR+ ALKYHPDK        + E A++         
Sbjct: 1   TDYYEILGVPRD---ASLDEIKKAYRKLALKYHPDK-----NPGDKEEAEEK-------- 44

Query: 154 FKAVQEAYEVLIDPVK 169
           FK + EAYEVL DP K
Sbjct: 45  FKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 61.0 bits (149), Expect = 3e-12
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 17/72 (23%)

Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHF 154
           D+Y +LG+      A++++I+K+YR+ ALKYHPDK      AEE               F
Sbjct: 1   DYYDILGVPPD---ASDEEIKKAYRKLALKYHPDKNPDDPEAEE--------------KF 43

Query: 155 KAVQEAYEVLID 166
           K + EAYEVL D
Sbjct: 44  KEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 67.5 bits (165), Expect = 6e-12
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 17/84 (20%)

Query: 91  SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEI 150
             ++D+Y +LG++     A+E++I+KSYR+ A+KYHPD+                   E 
Sbjct: 1   MVKRDYYEILGVTRD---ASEEEIKKSYRKLAMKYHPDRNPG--------------DKEA 43

Query: 151 ETHFKAVQEAYEVLIDPVKRRIYD 174
           E  FK   EAYEVL DP KR IYD
Sbjct: 44  EELFKEAAEAYEVLSDPKKRGIYD 67

Length = 366

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 67.1 bits (164), Expect = 7e-12
 Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 17/82 (20%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           ++D+Y +LG+S     A +D+I+K+YR+ ALKYHPD              K     E E 
Sbjct: 2   KRDYYEVLGVSRS---ADKDEIKKAYRKLALKYHPD--------------KNPDNKEAEE 44

Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
           HFK V EAYEVL +  KRR YD
Sbjct: 45  HFKEVNEAYEVLSNDDKRRRYD 66

Length = 397

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 18/82 (21%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           ++D+Y +LG+S     AT+++I+K+YR  A KYHPD                 K  E E 
Sbjct: 2   KKDYYEILGVSRN---ATQEEIKKAYRRLARKYHPDFN---------------KNPEAEE 43

Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
            FK + EAY+VL DP KR++YD
Sbjct: 44  KFKEINEAYQVLSDPEKRKLYD 65

Length = 382

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 17/80 (21%)

Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHF 154
           D+Y +LG+S     A+ ++I+K+YR+ A+KYHPDK        + EA K+         F
Sbjct: 2   DYYTILGVSKT---ASPEEIKKAYRKLAVKYHPDKNPG-----DAEAEKR---------F 44

Query: 155 KAVQEAYEVLIDPVKRRIYD 174
           K V EAYEVL D  KR  YD
Sbjct: 45  KEVSEAYEVLSDAQKRESYD 64

Length = 391

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 64.4 bits (157), Expect = 5e-11
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 22/117 (18%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           ++D+Y +LG+S     AT+++I+++Y+    ++HPD+          E  K+A     E 
Sbjct: 3   KKDYYEILGVSRN---ATQEEIKRAYKRLVKEWHPDRH--------PENRKEA-----EQ 46

Query: 153 HFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAP------QDFYKVFGPAFTRN 203
            FK +QEAYEVL DP KR +YD      +  P           +D +K F   F R+
Sbjct: 47  KFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRD 103

Length = 369

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 18/83 (21%)

Query: 92  NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIE 151
           N  ++Y  LG+S     A++D+I+K+YR+ + KYHPD        +E  A         E
Sbjct: 2   NNTEYYDRLGVSKD---ASQDEIKKAYRKLSKKYHPD------INKEPGA---------E 43

Query: 152 THFKAVQEAYEVLIDPVKRRIYD 174
             +K VQEAYE L DP KR  YD
Sbjct: 44  EKYKEVQEAYETLSDPQKRAAYD 66

Length = 380

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 19/92 (20%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
            +D+Y +LGL      A++D+I+K++R+ A+KYHPDK      AEE              
Sbjct: 3   SKDYYEVLGLEKG---ASDDEIKKAFRKLAIKYHPDKNKGNKEAEE-------------- 45

Query: 153 HFKAVQEAYEVLIDPVKRRIYDS--TDEFDDA 182
            FK + EAY+VL DP K+  YD   T +F+ A
Sbjct: 46  KFKEINEAYQVLSDPQKKAQYDQFGTADFNGA 77

Length = 380

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 17/84 (20%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           ++D Y  LG+S     A+ ++I+K+YR+ A + HPD       AEE              
Sbjct: 8   EKDFYKELGVSSD---ASAEEIKKAYRKLARELHPDANPGDPAAEE-------------- 50

Query: 153 HFKAVQEAYEVLIDPVKRRIYDST 176
            FKAV EA++VL DP KR+ YD T
Sbjct: 51  RFKAVSEAHDVLSDPAKRKEYDET 74

Length = 392

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 17/82 (20%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           ++D+Y +LG+S     AT D+I+K+YR+ A++YHPDK      AEE              
Sbjct: 4   KRDYYEVLGVSKT---ATVDEIKKAYRKKAIQYHPDKNPGDKEAEE-------------- 46

Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
            FK   EAY+VL DP KR  YD
Sbjct: 47  KFKEAAEAYDVLSDPDKRSRYD 68

Length = 386

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 18/82 (21%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           +D+YA+LG+      A++D+I+K++++ A KYHPD                 K    E  
Sbjct: 4   KDYYAILGVPKN---ASQDEIKKAFKKLARKYHPDVN---------------KSPGAEEK 45

Query: 154 FKAVQEAYEVLIDPVKRRIYDS 175
           FK + EAY VL DP KRRIYD+
Sbjct: 46  FKEINEAYTVLSDPEKRRIYDT 67

Length = 291

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 20/90 (22%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           ++D+Y +LG+      ATE++I+K+YR  A KYHPD         + EA         E 
Sbjct: 4   KKDYYEILGVDRN---ATEEEIKKAYRRLAKKYHPDLNPG-----DKEA---------EQ 46

Query: 153 HFKAVQEAYEVLIDPVKRRIYDSTDEFDDA 182
            FK + EAYE+L DP KR  Y   D+F  A
Sbjct: 47  KFKEINEAYEILSDPQKRAQY---DQFGHA 73

Length = 386

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 18/84 (21%)

Query: 91  SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEI 150
           +  +D+Y +LGLS     A+ + I+K+YR+ A+KYHPDK                K+ + 
Sbjct: 2   ATTRDYYEILGLSKD---ASVEDIKKAYRKLAMKYHPDKN---------------KEPDA 43

Query: 151 ETHFKAVQEAYEVLIDPVKRRIYD 174
           E  FK + EAY VL D  KR  YD
Sbjct: 44  EEKFKEISEAYAVLSDAEKRAQYD 67

Length = 377

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 17/82 (20%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           Q+D+Y +LG+S     A+ED+I+K+YR+ AL+YHPD              +     E E 
Sbjct: 3   QRDYYEVLGVSRD---ASEDEIKKAYRKLALQYHPD--------------RNPDNPEAEQ 45

Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
            FK   EAYEVL D  KR  YD
Sbjct: 46  KFKEAAEAYEVLRDAEKRARYD 67

Length = 373

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 18/83 (21%)

Query: 92  NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIE 151
            ++D+Y +LG+S     A++D+I+K+YR+ + KYHPD              K+   DE  
Sbjct: 2   AKRDYYEVLGVSKS---ASKDEIKKAYRKLSKKYHPD------------INKEEGADE-- 44

Query: 152 THFKAVQEAYEVLIDPVKRRIYD 174
             FK + EAYEVL D  KR  YD
Sbjct: 45  -KFKEISEAYEVLSDDQKRAQYD 66

Length = 376

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 17/82 (20%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           ++D+Y +LG+      ATE +I+K+YR+ A +YHPD       AEE              
Sbjct: 8   EKDYYKVLGVPKD---ATEAEIKKAYRKLAREYHPDANKGDAKAEE-------------- 50

Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
            FK + EAY+VL D  KR+ YD
Sbjct: 51  RFKEISEAYDVLSDEKKRKEYD 72

Length = 389

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 58.5 bits (141), Expect = 5e-09
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 17/82 (20%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           ++D+Y +LGLS     A++D+I+K+YR+ A+KYHPD              K     E E+
Sbjct: 2   KRDYYEILGLSKG---ASKDEIKKAYRKIAIKYHPD--------------KNKGNKEAES 44

Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
            FK   EAYEVLID  KR  YD
Sbjct: 45  IFKEATEAYEVLIDDNKRAQYD 66

Length = 365

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHF 154
           D+Y +LG+      A+ ++I+K+YR+ ALKYHPD+                     E  F
Sbjct: 7   DYYEILGVPPN---ASLEEIKKAYRKLALKYHPDRNPGD-------------PKVAEEKF 50

Query: 155 KAVQEAYEVLIDPVKRRIYDSTDEFDDAIPAD 186
           K + EAYE+L DP +R  YD     +      
Sbjct: 51  KEINEAYEILSDPERRAEYDKIGADNYFPGKS 82

Length = 237

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 18/80 (22%)

Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHF 154
           D+Y LLG+S     A+ D+I+ +YR+ ALKYHPD+       E+  A K          F
Sbjct: 3   DYYELLGVSRT---ASADEIKSAYRKLALKYHPDRN-----KEKGAAEK----------F 44

Query: 155 KAVQEAYEVLIDPVKRRIYD 174
             + EAY VL D  KR  YD
Sbjct: 45  AQINEAYAVLSDAEKRAHYD 64

Length = 371

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 21/87 (24%)

Query: 92  NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIE 151
           + +  Y +L LS      T  +I+K+YR+ A+K+HPDK                K     
Sbjct: 26  DNEKLYEVLNLSKD---CTTSEIKKAYRKLAIKHHPDK-----------GGDPEK----- 66

Query: 152 THFKAVQEAYEVLIDPVKRRIYDSTDE 178
             FK +  AYEVL DP KR+IYD   E
Sbjct: 67  --FKEISRAYEVLSDPEKRKIYDEYGE 91

Length = 421

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 55.4 bits (133), Expect = 5e-08
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 17/83 (20%)

Query: 92  NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIE 151
           +++ +Y +LG+S     A +++I+ +YR+ A+KYHPDK                   E E
Sbjct: 2   SERSYYDILGVSKS---ANDEEIKSAYRKLAIKYHPDKNKG--------------NKESE 44

Query: 152 THFKAVQEAYEVLIDPVKRRIYD 174
             FK   EAYE+L DP KR+ YD
Sbjct: 45  EKFKEATEAYEILRDPKKRQAYD 67

Length = 372

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 22/82 (26%)

Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPD--KQAALLFAEETEAAKQAKKDEIET 152
           D+Y +LG+S     A +D+++++YR  A KYHPD  K+     AE+              
Sbjct: 4   DYYEILGVSRD---ADKDELKRAYRRLARKYHPDVNKEPG---AED-------------- 43

Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
            FK +  AYEVL DP  R  YD
Sbjct: 44  RFKEINRAYEVLSDPETRARYD 65

Length = 374

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 18/82 (21%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           ++D+Y +LG+      A + +I+K+YR+ A KYHPD       +EE  A ++        
Sbjct: 4   KRDYYEVLGVDRN---ADKKEIKKAYRKLARKYHPD------VSEEEGAEEK-------- 46

Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
            FK + EAY VL D  KR+ YD
Sbjct: 47  -FKEISEAYAVLSDDEKRQRYD 67

Length = 378

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 18/83 (21%)

Query: 92  NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIE 151
           +++D+Y +LG+      A+ D+++K+YR+ A KYHPD                 K  + E
Sbjct: 2   SKRDYYEVLGVDRN---ASVDEVKKAYRKLARKYHPDVN---------------KAPDAE 43

Query: 152 THFKAVQEAYEVLIDPVKRRIYD 174
             FK V+EAY+ L DP K+  YD
Sbjct: 44  DKFKEVKEAYDTLSDPQKKAHYD 66

Length = 371

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 49.2 bits (117), Expect = 4e-06
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 18/82 (21%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           ++D+Y +LG+S     A+E +IR++YR+ A +YHPD                 K  +   
Sbjct: 3   KKDYYEVLGVSKT---ASEQEIRQAYRKLAKQYHPDLN---------------KSPDAHD 44

Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
               + EA +VL+D  KR+ YD
Sbjct: 45  KMVEINEAADVLLDKDKRKQYD 66

Length = 372

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 18/81 (22%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           +D+YA++G+     L T   I+ +YR  A KYHPD                +K+ + E  
Sbjct: 4   KDYYAIMGVKPTDDLKT---IKTAYRRLARKYHPD---------------VSKEPDAEAR 45

Query: 154 FKAVQEAYEVLIDPVKRRIYD 174
           FK V EA+EVL D  +R  YD
Sbjct: 46  FKEVAEAWEVLSDEQRRAEYD 66

Length = 306

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 33/138 (23%), Positives = 48/138 (34%), Gaps = 5/138 (3%)

Query: 238 WREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKR 297
            R++P  DEF    AE R   R  E+Q  K   KA      R R  +     R P +   
Sbjct: 274 ERKYPLTDEFKEHHAEQRAQYR--EKQKEK---KAFLWTLRRNRLRMIITPWRAPELHAE 328

Query: 298 KEAEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKK 357
               K  +  +K      KK   ++   A  E  R   +E       A  ++   + +KK
Sbjct: 329 NAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKK 388

Query: 358 LLRKERTRLRTLSASVTS 375
            L        T S +  S
Sbjct: 389 GLIDASPNEDTPSENEES 406

Length = 429

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 18/81 (22%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           QD+Y +LG+S     A++  ++K+Y + A +YHPD          T  AK A+K      
Sbjct: 3   QDYYQILGVSKT---ASQADLKKAYLKLAKQYHPD----------TTDAKDAEKK----- 44

Query: 154 FKAVQEAYEVLIDPVKRRIYD 174
           FK +  AY+VL D  KR  YD
Sbjct: 45  FKEINAAYDVLKDEQKRAAYD 65

Length = 372

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 47.7 bits (114), Expect = 2e-05
 Identities = 50/299 (16%), Positives = 95/299 (31%), Gaps = 32/299 (10%)

Query: 296  KRKEAEKAEKQK-----KKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKK 350
            K KE EK +         ++     + L+E+E     E  + ++++ + +     L++ K
Sbjct: 1114 KEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPK 1173

Query: 351  VKEKEKKLLRKERTRLRTLSASVTSQHL-LDVSTEDVESLCMSFDMEQLRNLCDKMEKSE 409
            +K+KEKK  +    + +  S    S+ +  D   +  +                  +KS 
Sbjct: 1174 LKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDK--------------PDNKKSN 1219

Query: 410  GLEQAKLIRNAVGHADESEAKKQDEKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIEL 469
                 +          +  + K+ + K    + S E N         K+ KP +  +   
Sbjct: 1220 SSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVS 1279

Query: 470  LRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPA 529
              +     P           E  G  +      K  K  L       K       K+K  
Sbjct: 1280 AVQYSPPPPSKRPD-----GESNGGSKPSSPTKKKVKKRLEGSLAALKK------KKKSE 1328

Query: 530  QSIASPLTTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQD 588
            +  A    ++  V  AS  Q       R    +  SSS     ++V  +       D+D
Sbjct: 1329 KKTARKKKSKTRVKQASASQ-SSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDED 1386

Length = 1388

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 45.5 bits (107), Expect = 5e-05
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 14/66 (21%)

Query: 109 ATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPV 168
           + ++ I+KSYR+ ALKYHPD+ A                 E E  FK + EAY VL D  
Sbjct: 15  SNQETIKKSYRKLALKYHPDRNAG--------------DKEAEEKFKLINEAYGVLSDEK 60

Query: 169 KRRIYD 174
           KR +YD
Sbjct: 61  KRALYD 66

Length = 369

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 12/79 (15%)

Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHF 154
           D Y +LG+       +E  I+K YR  ++K+HPDK   ++            + E E  +
Sbjct: 99  DPYEILGIDQD---TSERDIKKRYRMLSMKFHPDKAPPMVNEL---------RSEYEEKY 146

Query: 155 KAVQEAYEVLIDPVKRRIY 173
           K + +AY +L D  +R  Y
Sbjct: 147 KTITKAYGLLTDKKRRENY 165

Length = 610

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 45.2 bits (108), Expect = 9e-05
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 27/163 (16%)

Query: 296 KRKEAEKAEKQKKKEAKYLAKKLQEEEAARAAEE--ERRRKVEEE--KRVAEVALQQKKV 351
           K KEAE+  K+  +EAK  A+ +++E    A EE  + R + E+E  +R  E+   +K++
Sbjct: 32  KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRL 91

Query: 352 KEKEKKL------LRKERTRLRTLSASVTSQH-LLDVSTEDVESL----------CMSFD 394
            +KE+ L      L K    L      +  +   L+   E++E L               
Sbjct: 92  LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLT 151

Query: 395 MEQLRN-LCDKMEKSEGLEQAKLIRNAVGHADESEAKKQDEKK 436
            E+ +  L +K+E+    E A LI+       E EAK++ +KK
Sbjct: 152 AEEAKEILLEKVEEEARHEAAVLIKEI-----EEEAKEEADKK 189

Length = 520

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 589 AWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLK 636
            W+  ++  L++A+K + K     WE++A  +PG+T  QC++++ +L 
Sbjct: 1   PWTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKE 637
             W+  ++  L++ +K + K     WE++A  +PG+T  QC++++ +L +
Sbjct: 2   GEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWRNLLK 48

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)

Query: 461 PWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEI 501
           PW++EE ELL + ++KY K     WE I++ +  GR+ ++ 
Sbjct: 1   PWTEEEDELLLEAVKKYGKN---NWEKIAKELP-GRTPKQC 37

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 44.1 bits (105), Expect = 2e-04
 Identities = 40/177 (22%), Positives = 82/177 (46%), Gaps = 26/177 (14%)

Query: 262 ERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAKYLAKKLQEE 321
           E    ++ E+A+KE     +  +  A  ++     R E E+  K+++ E + L ++L + 
Sbjct: 31  EELAKRIIEEAKKEAETLKKEALLEA--KEEVHKLRAELERELKERRNELQRLERRLLQR 88

Query: 322 EAARAAEEERRRKVEE--EKRVAEVALQQKKVKEKEKKLLRKERTRLRTLSASVTSQHLL 379
           E     + E   K EE  EK+  E++ ++K + EKE++L      +   L      + + 
Sbjct: 89  EETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREEL------ERIS 142

Query: 380 DVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNAVGHADESEAKKQDEKK 436
            ++ E+ + + +           +++E+    E AKLI+       E EAK++ +KK
Sbjct: 143 GLTQEEAKEILL-----------EEVEEEARHEAAKLIKEI-----EEEAKEEADKK 183

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 10/81 (12%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           + DH++L GL   R+   E  +  +YR    + HPD+ AA   AE+  A + A      T
Sbjct: 5   KDDHFSLFGLPA-RFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWA------T 57

Query: 153 HFKAVQEAYEVLIDPVKRRIY 173
                 EAY+ L DP+KR  Y
Sbjct: 58  R---ANEAYQTLRDPLKRARY 75

Length = 176

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEI 501
             W++EE ELL + ++KY K     WE I++ +  GR+ E+ 
Sbjct: 2   GEWTEEEDELLIELVKKYGKN---NWEKIAKELP-GRTAEQC 39

Length = 49

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 16/67 (23%), Positives = 40/67 (59%), Gaps = 3/67 (4%)

Query: 297 RKEAEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEK 356
            ++ +K  ++++++    A++ ++EEA    EE+++ +  E K       +Q+K++EKE+
Sbjct: 258 LRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEE-REAKLAKLSPEEQRKLEEKER 316

Query: 357 KLLRKER 363
           K  ++ R
Sbjct: 317 K--KQAR 321

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.2 bits (101), Expect = 5e-04
 Identities = 50/237 (21%), Positives = 103/237 (43%), Gaps = 14/237 (5%)

Query: 250  EQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKK 309
            E+A+  D  +    +  K  E  +K E A+ +   D A K      K  EA+KAE+ KK 
Sbjct: 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKA--DEAKKAAEAKKKADEAKKAEEAKKA 1524

Query: 310  EAKYLAKKLQEEEAARAAEEERR----RKVEEEKRVAEVALQQKKVKEKEKKLLRKERTR 365
            +    A++ ++ + A+ AEE+++    +K EE K+  E    ++  K +E K +   +  
Sbjct: 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE 1584

Query: 366  LRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNAVGH-- 423
                +     + ++ +  E+ +        E+ +   +   K+E L++A+  +  V    
Sbjct: 1585 EAKKAEEARIEEVMKLYEEEKK-----MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639

Query: 424  -ADESEAKKQDEKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPK 479
              +  E KK +E K  ++   ++          +KK+   +K+  E  +K  +   K
Sbjct: 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696

Length = 2084

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 270 EKARKEEYARIRTLVDNAYKRDPRILK--RKEAEKAEKQKKKEA---KYLAKKLQEEEAA 324
             A  ++  RI+     A K++    K   ++AE+AEKQ+  E    K L ++   E+AA
Sbjct: 45  PGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAA 104

Query: 325 RAAEEERRRKVEEEKRVAEVALQQKKVKEKEKK 357
           + AE+  ++  E++K+  E   +Q    + + +
Sbjct: 105 KQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAE 137

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 461 PWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEI 501
           PW+ EE ELL + ++K+       W  I++++  GR+  + 
Sbjct: 3   PWTPEEDELLIEAVKKHGN---GNWSKIAKHLP-GRTDNQC 39

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLK 636
             W+  ++  L++A+K         W ++A  +PG+T  QCK ++ +  
Sbjct: 2   GPWTPEEDELLIEAVKKHGN---GNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 14/106 (13%)

Query: 262 ERQNAKLTEKARKEEYARIRTLVDNAYK----------RDPRILKRKEAEKAEKQKKKEA 311
             Q A+  EK R  E AR + L   A                  K+K+AE+A+ ++  E 
Sbjct: 73  LEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE- 131

Query: 312 KYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKK 357
              AK   E EA + A+EE +++ EEE +    A  +KK  E +KK
Sbjct: 132 ---AKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKK 174

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 39/245 (15%), Positives = 89/245 (36%), Gaps = 4/245 (1%)

Query: 243 HADEFDLEQAESRDHKRWMERQNAKLTEKARK-EEYARIRTLVDNAYKRDPRILKR--KE 299
             +       E+++ ++  + Q  +L   A++ EE       ++     D   LK   KE
Sbjct: 264 EEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 323

Query: 300 AEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKLL 359
            +K EK+ KKE + + +  +E +      E    + E+ +++ E   Q ++    +KKL 
Sbjct: 324 LKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLE 383

Query: 360 RKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRN 419
            +  +    L          +     +       + + L+    + E     E  + +  
Sbjct: 384 SERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKE-ELKIVEELEESLET 442

Query: 420 AVGHADESEAKKQDEKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPK 479
             G   E + + + +   + ++         LLK  +  +     E + L +K  +   K
Sbjct: 443 KQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQK 502

Query: 480 GTSRR 484
            +  R
Sbjct: 503 ESKAR 507

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 41.0 bits (95), Expect = 0.002
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 18/82 (21%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           ++D+Y +LG+      A E +I+K++R+ A KYHPD+                K  +  +
Sbjct: 1   KRDYYEVLGIDRD---ADEQEIKKAFRKLAKKYHPDRN---------------KAPDAAS 42

Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
            F  + EA +VL +P KR  YD
Sbjct: 43  IFAEINEANDVLSNPKKRANYD 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.5 bits (94), Expect = 0.003
 Identities = 85/409 (20%), Positives = 150/409 (36%), Gaps = 28/409 (6%)

Query: 242  PHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIR--TLVDNAYKRDPRILKRKE 299
            P   +FD +  E        E +     E+A+K E  +       + A K+     K +E
Sbjct: 1074 PSYKDFDFDAKEDNRADEATE-EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEE 1132

Query: 300  AEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKLL 359
            A KAE  +K E    A+  +  E AR AE+ R+    EE R AE A   KK +   K   
Sbjct: 1133 ARKAEDARKAEEARKAEDAKRVEIARKAEDARK---AEEARKAEDA---KKAEAARKAEE 1186

Query: 360  RKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRN 419
             ++   LR                ED      +   E+ R   ++  K+E  ++A+ ++ 
Sbjct: 1187 VRKAEELR--------------KAEDARKAEAARKAEEERKA-EEARKAEDAKKAEAVKK 1231

Query: 420  A-VGHADESEAKKQDEKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYP 478
            A     D  EAKK +E++N ++    E          +   K     + + L+K  +K  
Sbjct: 1232 AEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKK 1291

Query: 479  KGTSRRWEVISEYIGTGRSVEEILKA--TKTVLLQKPDGAKAFDSFLEKRKPAQSIASPL 536
               +++ E   +     +  EE  KA   K    +    A A     E+ K A   A   
Sbjct: 1292 ADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351

Query: 537  TTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQER 596
                     +  +  + +  + + +++ + +  +K  +   A+     +++D   A  E 
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA-DEL 1410

Query: 597  ALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
                A K    E  ++ E    A   K   +  KK    K+     K A
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459

Length = 2084

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%)

Query: 239 REFPHADEFDLEQAESRDHKRWMERQNAKLTEKARK-EEYARIRTLVDNAYKRDPRILKR 297
           +E   A+E   +QA  ++  + +E++  K  E+ ++ EE  +   L     +   R    
Sbjct: 84  KEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAA 143

Query: 298 KEAEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKEKK 357
           ++ +KAE  K K A   AK     EA + AEE  +   E + +    A ++K   E +  
Sbjct: 144 EQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAA 203

Query: 358 L 358
            
Sbjct: 204 A 204

Length = 387

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	646
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	100.0
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	100.0
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.87
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.8
PLN03212	249	Transcription repressor MYB5; Provisional	99.74
PRK14288	369	chaperone protein DnaJ; Provisional	99.73
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.71
PLN03091	459	hypothetical protein; Provisional	99.68
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.67
PRK14286	372	chaperone protein DnaJ; Provisional	99.67
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.66
PRK14287	371	chaperone protein DnaJ; Provisional	99.65
PRK14276	380	chaperone protein DnaJ; Provisional	99.65
PRK14296	372	chaperone protein DnaJ; Provisional	99.64
PRK14285	365	chaperone protein DnaJ; Provisional	99.64
PRK14282	369	chaperone protein DnaJ; Provisional	99.63
PRK14279	392	chaperone protein DnaJ; Provisional	99.62
PRK14298	377	chaperone protein DnaJ; Provisional	99.62
PRK14278	378	chaperone protein DnaJ; Provisional	99.62
PRK14294	366	chaperone protein DnaJ; Provisional	99.62
PRK14297	380	chaperone protein DnaJ; Provisional	99.62
PRK14299	291	chaperone protein DnaJ; Provisional	99.61
PRK14301	373	chaperone protein DnaJ; Provisional	99.61
PRK14277	386	chaperone protein DnaJ; Provisional	99.61
KOG0724	335	consensus Zuotin and related molecular chaperones	99.6
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.6
PRK14280	376	chaperone protein DnaJ; Provisional	99.6
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.6
PRK14281	397	chaperone protein DnaJ; Provisional	99.6
PRK14291	382	chaperone protein DnaJ; Provisional	99.59
PRK10767	371	chaperone protein DnaJ; Provisional	99.58
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.58
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.58
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.57
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.57
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.56
PRK14283	378	chaperone protein DnaJ; Provisional	99.56
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.56
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.56
PRK14289	386	chaperone protein DnaJ; Provisional	99.55
PRK14290	365	chaperone protein DnaJ; Provisional	99.55
PRK14284	391	chaperone protein DnaJ; Provisional	99.55
PRK14295	389	chaperone protein DnaJ; Provisional	99.54
PRK14292	371	chaperone protein DnaJ; Provisional	99.53
PRK14293	374	chaperone protein DnaJ; Provisional	99.52
PRK14300	372	chaperone protein DnaJ; Provisional	99.47
PHA03102	153	Small T antigen; Reviewed	99.45
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.41
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.38
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.38
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.38
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.37
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.35
PRK05014	171	hscB co-chaperone HscB; Provisional	99.3
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.29
PRK01356	166	hscB co-chaperone HscB; Provisional	99.28
PRK00294	173	hscB co-chaperone HscB; Provisional	99.26
PRK03578	176	hscB co-chaperone HscB; Provisional	99.23
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.16
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.1
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.05
PHA02624	647	large T antigen; Provisional	99.0
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.98
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	98.97
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	98.96
PTZ00100	116	DnaJ chaperone protein; Provisional	98.95
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.89
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.86
PRK01773	173	hscB co-chaperone HscB; Provisional	98.84
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.82
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	98.72
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.66
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.66
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.58
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.58
KOG0049	939	consensus Transcription factor, Myb superfamily [T	98.48
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	98.34
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.31
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.21
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.14
PLN03212	249	Transcription repressor MYB5; Provisional	97.98
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.91
KOG0051	607	consensus RNA polymerase I termination factor, Myb	97.86
PLN03091	459	hypothetical protein; Provisional	97.54
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.35
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	97.34
KOG0048	238	consensus Transcription factor, Myb superfamily [T	96.97
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	96.84
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.81
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	96.74
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.61
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	96.57
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	96.43
KOG0051	607	consensus RNA polymerase I termination factor, Myb	96.24
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	96.16
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	95.81
KOG4167	907	consensus Predicted DNA-binding protein, contains	95.35
KOG0431	453	consensus Auxilin-like protein and related protein	95.24
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.16
KOG1279	506	consensus Chromatin remodeling factor subunit and	95.15
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	95.13
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.1
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.06
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	94.62
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.53
KOG4364	811	consensus Chromatin assembly factor-I [Chromatin s	94.5
PTZ00266	1021	NIMA-related protein kinase; Provisional	93.2
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	93.06
PTZ00121	2084	MAEBL; Provisional	93.04
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	93.02
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	92.9
KOG2891	445	consensus Surface glycoprotein [General function p	92.07
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	91.58
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	91.42
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	91.17
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	91.08
KOG4364	811	consensus Chromatin assembly factor-I [Chromatin s	91.04
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	90.75
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	88.7
PRK00247	429	putative inner membrane protein translocase compon	88.55
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	88.43
KOG0724	335	consensus Zuotin and related molecular chaperones	87.88
PTZ00121	2084	MAEBL; Provisional	87.57
KOG4329	445	consensus DNA-binding protein [General function pr	85.76
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	85.69
COG3064	387	TolA Membrane protein involved in colicin uptake [	84.99
PRK09510	387	tolA cell envelope integrity inner membrane protei	84.81
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	84.4
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	83.78
KOG2412	591	consensus Nuclear-export-signal (NES)-containing p	83.68
PRK09510	387	tolA cell envelope integrity inner membrane protei	82.71
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	80.43
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	80.21

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-57  Score=451.62  Aligned_cols=304  Identities=36%  Similarity=0.515  Sum_probs=271.9

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      +|+.+|+|.+|||+.+|+.+++.+|.+++++.+++||||+..+.|            ...++..|++||+||+||+|+.+
T Consensus        39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g------------~~~~d~fFk~iqkA~evL~D~~~  106 (379)
T COG5269          39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG------------NKGCDEFFKLIQKAREVLGDRKL  106 (379)
T ss_pred             hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC------------CCCcHHHHHHHHHHHHHhccHHH
Confidence            899999999999999999999999999999999999999996533            34568999999999999999999


Q ss_pred             hhhhcccCCCCCCCCC-CCCCCchHHhhhhhhccCCCCccCccCCCCCCCCCChHHHHhhhhHHhcccccccCCCccccc
Q 006420          170 RRIYDSTDEFDDAIPA-DCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFD  248 (646)
Q Consensus       170 R~~YDs~~~~~~~~p~-~~~~~~Ff~~f~~~F~~~~r~s~~~~~P~lG~~~s~~e~v~~FY~fw~~F~SwR~f~~~de~~  248 (646)
                      |.+|||++...+-.|. ...+.+||++|+|+|.+++|||..+|||+||..+++..+|+.||.||+||+|||+|.++|+.-
T Consensus       107 R~qyDS~df~advppp~~~t~~~Ffe~w~pvFe~earFSkKqPvPsLg~~dss~keVe~FY~FW~nFdSWRtFE~lded~  186 (379)
T COG5269         107 RLQYDSNDFDADVPPPRIYTPDEFFEVWEPVFEREARFSKKQPVPSLGPSDSSLKEVEEFYEFWSNFDSWRTFEPLDEDY  186 (379)
T ss_pred             HhhccccccccCCCCccCCCchhHHHHHHHHHHhhhhccccCCCCCCCCchhHHHHHHHHHHHHHhccccccccchhhhc
Confidence            9999998654443333 346899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006420          249 LEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAKYLAKKLQEEEAARAAE  328 (646)
Q Consensus       249 ~e~~e~R~~rR~~Ek~N~k~r~k~kke~~~rir~LV~~a~~~DpRik~~keeek~~k~~~k~~k~~~~r~~~ee~~~~~e  328 (646)
                      .++.++|+++|+.|+.|+..|.+.+..++.||+.||+.|.++||||+-|+++++..+...++++++..+.+...+....+
T Consensus       187 pdd~e~rD~kry~e~KNr~~r~k~K~~DnaRl~~LV~~A~~~DPRIK~fkEqeK~~k~~rkWereagar~~a~aa~k~ka  266 (379)
T COG5269         187 PDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKWEREAGARLKALAALKGKA  266 (379)
T ss_pred             CcchhhhhhHHHHHhhhHHHHHhhhchhHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999888887777666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC------ChhhHHHhhcCCCHHHHHHHH
Q 006420          329 EERRRKVEEEKRVAEVALQQKKVKEKEKKLLRKERTRLRTLSASVTSQHLLDV------STEDVESLCMSFDMEQLRNLC  402 (646)
Q Consensus       329 eer~~ke~ee~~~~e~~~~~KK~ke~~Kk~lkKekk~lR~~~~~~~~~~~~~~------~~~dve~lc~~l~~e~L~~l~  402 (646)
                      +++.+.+.+.++.+-.....|++||..+++++.+++.+|+..++   .+||+.      .++||++|+.+|..++|..|.
T Consensus       267 e~k~kae~ea~a~asa~a~kkkaKE~~kka~k~~Kk~ikna~kd---~~yf~d~~~a~~id~~v~li~~~l~d~el~~~a  343 (379)
T COG5269         267 EAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAKD---ADYFGDADKAEHIDEDVDLIMDKLGDEELGQLA  343 (379)
T ss_pred             HHHhHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHhhhhh---hccccCCchhhhcchhhhHHHHhcCcHHHHHHH
Confidence            66666666666655566677899999999999999999998884   455552      248999999999999999999


Q ss_pred             HHhhcc
Q 006420          403 DKMEKS  408 (646)
Q Consensus       403 ~~l~~~  408 (646)
                      ..+.+.
T Consensus       344 ~~i~a~  349 (379)
T COG5269         344 ADIKAE  349 (379)
T ss_pred             HHhhhh
Confidence            888654

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-36  Score=321.85  Aligned_cols=202  Identities=36%  Similarity=0.588  Sum_probs=172.0

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      ..+.++||+||||.+   +|+..+||++||+|||+|||||++..             ..++++.|+.|+.||+|||||..
T Consensus         4 ~~~~~c~YE~L~v~~---~a~d~eik~~YRklALq~HPDknpd~-------------ieeat~~F~~i~aAYeVLSdp~e   67 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVER---DADDDEIKKNYRKLALQYHPDKNPDR-------------IEEATQQFQLIQAAYEVLSDPQE   67 (508)
T ss_pred             chhhhHHHHHhcccc---cCCHHHHHHHHHHHHHhhCCCCCCcc-------------HHHHHHHHHHHHHHHHHhcChHh
Confidence            356689999999999   99999999999999999999998853             45789999999999999999999


Q ss_pred             hhhhcccCC---CCC------C-------------CCCCCCCCchHHhhhhhhccCCC----C--ccCccCCCCCCCCCC
Q 006420          170 RRIYDSTDE---FDD------A-------------IPADCAPQDFYKVFGPAFTRNGR----W--SANQLVPSLGDENTP  221 (646)
Q Consensus       170 R~~YDs~~~---~~~------~-------------~p~~~~~~~Ff~~f~~~F~~~~r----~--s~~~~~P~lG~~~s~  221 (646)
                      |.|||++..   ++.      .             ++......+||.||+.+|...+.    +  ....-.|.||+..++
T Consensus        68 R~wyd~hreqil~~~~s~~~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~d~~~~ap~fg~~~t~  147 (508)
T KOG0717|consen   68 RAWYDSHREQILRGKNSDTGVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLGDSKLLYPLFGYSTTD  147 (508)
T ss_pred             hhhHHHHHHHHhcCCCCccccchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhccCCccccccccCCCCc
Confidence            999999864   221      1             11223467899999999975332    1  123457999999999


Q ss_pred             hHHHHhhhhHHhcccccccCCCccccchhhhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHH
Q 006420          222 LKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKEAE  301 (646)
Q Consensus       222 ~e~v~~FY~fw~~F~SwR~f~~~de~~~e~~e~R~~rR~~Ek~N~k~r~k~kke~~~rir~LV~~a~~~DpRik~~keee  301 (646)
                      ++.|..||.||..|.+-++|.|.|+|+..+..+|..+|.|+++|++.|...+.+++.+||.||.++.++|||++.-.+..
T Consensus       148 ye~~~~fY~~W~afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKrDpRvk~~l~~k  227 (508)
T KOG0717|consen  148 YEQVVPFYQFWLAFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVKKRDPRVKAMLELK  227 (508)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999833333


Q ss_pred             HHHHHH
Q 006420          302 KAEKQK  307 (646)
Q Consensus       302 k~~k~~  307 (646)
                      ..+..+
T Consensus       228 ~~E~~r  233 (508)
T KOG0717|consen  228 DAEAYR  233 (508)
T ss_pred             HHHHHH
Confidence            333333

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.9e-22  Score=213.15  Aligned_cols=96  Identities=39%  Similarity=0.582  Sum_probs=79.3

Q ss_pred             CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420           91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR  170 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR  170 (646)
                      |...|||+||||++   +||+++||+|||+||++||||+|++              .++++++|+.|++||+|||||++|
T Consensus         1 ~~~~dyYeiLGV~k---~As~~EIKkAYRkLA~kyHPD~n~g--------------~~~AeeKFKEI~eAYEVLsD~eKR   63 (371)
T COG0484           1 MAKRDYYEILGVSK---DASEEEIKKAYRKLAKKYHPDRNPG--------------DKEAEEKFKEINEAYEVLSDPEKR   63 (371)
T ss_pred             CCccchhhhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC--------------CHHHHHHHHHHHHHHHHhCCHHHH
Confidence            35689999999999   9999999999999999999999995              457899999999999999999999


Q ss_pred             hhhcccCCCCCC--CCC--CCC-CC-chHHhhhhhhccC
Q 006420          171 RIYDSTDEFDDA--IPA--DCA-PQ-DFYKVFGPAFTRN  203 (646)
Q Consensus       171 ~~YDs~~~~~~~--~p~--~~~-~~-~Ff~~f~~~F~~~  203 (646)
                      ++||.+++....  ...  ... .+ +|.++|+.+|+..
T Consensus        64 a~YD~fG~~~~~~gg~gg~g~~~fgg~~~DIF~~~FgGg  102 (371)
T COG0484          64 AAYDQFGHAGFKAGGFGGFGFGGFGGDFGDIFEDFFGGG  102 (371)
T ss_pred             HHhhccCccccccCCcCCCCcCCCCCCHHHHHHHhhcCC
Confidence            999999875432  100  111 11 6889999999633

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=3.9e-20  Score=192.36  Aligned_cols=70  Identities=46%  Similarity=0.802  Sum_probs=66.3

Q ss_pred             ccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006420           92 NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR  171 (646)
Q Consensus        92 k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~  171 (646)
                      -.+|||+||||++   +|+..+||+|||||||+||||||++              ++.+.+.|+.|+.||+|||||.+|+
T Consensus        14 ~~rDfYelLgV~k---~Asd~eIKkAYRKLALk~HPDkNpd--------------dp~A~e~F~~in~AYEVLsDpekRk   76 (336)
T KOG0713|consen   14 AGRDFYELLGVPK---NASDQEIKKAYRKLALKYHPDKNPD--------------DPNANEKFKEINAAYEVLSDPEKRK   76 (336)
T ss_pred             cCCCHHHHhCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC--------------CHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            3589999999999   9999999999999999999999997              5678999999999999999999999


Q ss_pred             hhcccCC
Q 006420          172 IYDSTDE  178 (646)
Q Consensus       172 ~YDs~~~  178 (646)
                      .||.+|+
T Consensus        77 ~YD~~GE   83 (336)
T KOG0713|consen   77 HYDTYGE   83 (336)
T ss_pred             HHHhhhH
Confidence            9999985

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.74  E-value=1.2e-17  Score=167.64  Aligned_cols=101  Identities=22%  Similarity=0.340  Sum_probs=88.4

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT  537 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~  537 (646)
                      +.++||+||+++|..+|++|+.   .+|..||..||.+||++||+.||.++|                            
T Consensus        24 KRg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~~g~gRT~KQCReRW~N~L----------------------------   72 (249)
T PLN03212         24 KRGPWTVEEDEILVSFIKKEGE---GRWRSLPKRAGLLRCGKSCRLRWMNYL----------------------------   72 (249)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCc---ccHHHHHHhhhcCCCcchHHHHHHHhh----------------------------
Confidence            5678999999999999999943   479999999977899999999999986                            


Q ss_pred             chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420          538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA  617 (646)
Q Consensus       538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA  617 (646)
                                                                  .|.....+||.+|+.+|..++..|+    .+|..||
T Consensus        73 --------------------------------------------~P~I~kgpWT~EED~lLlel~~~~G----nKWs~IA  104 (249)
T PLN03212         73 --------------------------------------------RPSVKRGGITSDEEDLILRLHRLLG----NRWSLIA  104 (249)
T ss_pred             --------------------------------------------chhcccCCCChHHHHHHHHHHHhcc----ccHHHHH
Confidence                                                        2233445899999999999999996    6899999


Q ss_pred             hhCCCCCHHHHHHHHHHHHH
Q 006420          618 TAVPGKTVIQCKKKFASLKE  637 (646)
Q Consensus       618 ~~Vpgrt~~~c~~Ryk~l~~  637 (646)
                      ..|||||.++|++||..+..
T Consensus       105 k~LpGRTDnqIKNRWns~Lr  124 (249)
T PLN03212        105 GRIPGRTDNEIKNYWNTHLR  124 (249)
T ss_pred             hhcCCCCHHHHHHHHHHHHh
Confidence            99999999999999976543

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=3.7e-18  Score=185.14  Aligned_cols=69  Identities=42%  Similarity=0.720  Sum_probs=63.4

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   +||.++||+|||+||++||||+++.              ...+.++|+.|++||+|||||.+|+.
T Consensus         2 ~~dyY~vLgv~~---~As~~eIkkayrkla~k~HPD~~~~--------------~~~a~~~f~~i~~AYevLsd~~kR~~   64 (369)
T PRK14288          2 ELSYYEILEVEK---HSNQETIKKSYRKLALKYHPDRNAG--------------DKEAEEKFKLINEAYGVLSDEKKRAL   64 (369)
T ss_pred             CCChHHHcCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC--------------ccHHHHHHHHHHHHHHHhccHHHHHH
Confidence            469999999999   9999999999999999999999974              23468899999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.+++
T Consensus        65 YD~~G~   70 (369)
T PRK14288         65 YDRYGK   70 (369)
T ss_pred             HHHhcc
Confidence            999875

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=6.4e-18  Score=177.85  Aligned_cols=68  Identities=49%  Similarity=0.792  Sum_probs=63.5

Q ss_pred             ccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006420           92 NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR  171 (646)
Q Consensus        92 k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~  171 (646)
                      +++.||+||||++   +||+.+||+|||+|+++||||||++                 +.++|+.|+.||+|||||.+|.
T Consensus         2 ~~~~~y~il~v~~---~As~~eikkayrkla~k~HpDkn~~-----------------~~ekfkei~~AyevLsd~ekr~   61 (337)
T KOG0712|consen    2 KNTKLYDILGVSP---DASEEEIKKAYRKLALKYHPDKNPD-----------------AGEKFKEISQAYEVLSDPEKRE   61 (337)
T ss_pred             cccccceeeccCC---CcCHHHHHHHHHHHHHHhCCCCCcc-----------------HHHHHHHHHHHHHHhcCHHHHH
Confidence            4678999999999   9999999999999999999999995                 4689999999999999999999


Q ss_pred             hhcccCCC
Q 006420          172 IYDSTDEF  179 (646)
Q Consensus       172 ~YDs~~~~  179 (646)
                      .||.+++.
T Consensus        62 ~yD~~g~~   69 (337)
T KOG0712|consen   62 IYDQYGEE   69 (337)
T ss_pred             HHHhhhhh
Confidence            99999864

>PLN03091 hypothetical protein; Provisional

Probab=99.68  E-value=2e-16  Score=169.31  Aligned_cols=101  Identities=22%  Similarity=0.367  Sum_probs=88.4

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT  537 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~  537 (646)
                      ..++||.|||++|.++|.+|+.   ..|..||..+|.+||++||+.||.++|                            
T Consensus        13 rKg~WTpEEDe~L~~~V~kyG~---~nWs~IAk~~g~gRT~KQCRERW~NyL----------------------------   61 (459)
T PLN03091         13 RKGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWINYL----------------------------   61 (459)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCc---CCHHHHhhhhccCcCcchHhHHHHhcc----------------------------
Confidence            4578999999999999999943   369999999987899999999999986                            


Q ss_pred             chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420          538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA  617 (646)
Q Consensus       538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA  617 (646)
                                                                  .|.....+||.+|+.+|...++.||    .+|..||
T Consensus        62 --------------------------------------------dP~IkKgpWT~EED~lLLeL~k~~G----nKWskIA   93 (459)
T PLN03091         62 --------------------------------------------RPDLKRGTFSQQEENLIIELHAVLG----NRWSQIA   93 (459)
T ss_pred             --------------------------------------------CCcccCCCCCHHHHHHHHHHHHHhC----cchHHHH
Confidence                                                        2233445899999999999999996    5899999


Q ss_pred             hhCCCCCHHHHHHHHHHHHH
Q 006420          618 TAVPGKTVIQCKKKFASLKE  637 (646)
Q Consensus       618 ~~Vpgrt~~~c~~Ryk~l~~  637 (646)
                      ..|||||.++|++||..+..
T Consensus        94 k~LPGRTDnqIKNRWnslLK  113 (459)
T PLN03091         94 AQLPGRTDNEIKNLWNSCLK  113 (459)
T ss_pred             HhcCCCCHHHHHHHHHHHHH
Confidence            99999999999999986544

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.67  E-value=4.7e-17  Score=178.79  Aligned_cols=89  Identities=38%  Similarity=0.585  Sum_probs=70.6

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      .....|||+||||++   +||.++||+|||+||++||||++++                  .++|+.|++||+|||||.+
T Consensus        24 ~~~~~d~Y~vLGV~~---~As~~eIKkAYrkla~k~HPDk~~~------------------~e~F~~i~~AYevLsD~~k   82 (421)
T PTZ00037         24 EVDNEKLYEVLNLSK---DCTTSEIKKAYRKLAIKHHPDKGGD------------------PEKFKEISRAYEVLSDPEK   82 (421)
T ss_pred             cccchhHHHHcCCCC---CCCHHHHHHHHHHHHHHHCCCCCch------------------HHHHHHHHHHHHHhccHHH
Confidence            344679999999999   9999999999999999999999862                  3689999999999999999


Q ss_pred             hhhhcccCCCCCCCCCCCCCCchHHhhhhhhc
Q 006420          170 RRIYDSTDEFDDAIPADCAPQDFYKVFGPAFT  201 (646)
Q Consensus       170 R~~YDs~~~~~~~~p~~~~~~~Ff~~f~~~F~  201 (646)
                      |+.||.++.....  ......+|+++|+.+|+
T Consensus        83 R~~YD~~G~~~~~--~~~~~~d~~d~f~~~Fg  112 (421)
T PTZ00037         83 RKIYDEYGEEGLE--GGEQPADASDLFDLIFG  112 (421)
T ss_pred             HHHHhhhcchhcc--cCCCCcchhhhHHHhhc
Confidence            9999998753211  01112345566666665

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=7.2e-17  Score=175.32  Aligned_cols=69  Identities=43%  Similarity=0.794  Sum_probs=63.4

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   +||.++||+|||+||++||||++++              ...+.++|+.|++||+||+||.+|+.
T Consensus         3 ~~d~y~~Lgv~~---~a~~~eik~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~kR~~   65 (372)
T PRK14286          3 ERSYYDILGVSK---SANDEEIKSAYRKLAIKYHPDKNKG--------------NKESEEKFKEATEAYEILRDPKKRQA   65 (372)
T ss_pred             CCCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------chHHHHHHHHHHHHHHHhccHHHHHH
Confidence            369999999999   9999999999999999999999874              23467899999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.++.
T Consensus        66 YD~~G~   71 (372)
T PRK14286         66 YDQFGK   71 (372)
T ss_pred             HHHhCc
Confidence            999875

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.66  E-value=2.5e-16  Score=161.31  Aligned_cols=96  Identities=18%  Similarity=0.325  Sum_probs=87.5

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCcc
Q 006420          459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTT  538 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~~  538 (646)
                      .+|||.|||.+|+..|.+|.+|   +|..||..+|.+|++|.|+.||.++|                             
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~---~W~~i~k~~gl~R~GKSCRlRW~NyL-----------------------------   56 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKH---NGTALPKLAGLRRCGKSCRLRWTNYL-----------------------------   56 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCC---CcchhhhhcCCCccchHHHHHhhccc-----------------------------
Confidence            5899999999999999999555   79999999998899999999999986                             


Q ss_pred             hhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHh
Q 006420          539 REEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVAT  618 (646)
Q Consensus       539 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~  618 (646)
                                                                 .|.++..+||.+|+.+|.+++..|    ++||..||.
T Consensus        57 -------------------------------------------rP~ikrg~fT~eEe~~Ii~lH~~~----GNrWs~IA~   89 (238)
T KOG0048|consen   57 -------------------------------------------RPDLKRGNFSDEEEDLIIKLHALL----GNRWSLIAG   89 (238)
T ss_pred             -------------------------------------------CCCccCCCCCHHHHHHHHHHHHHH----CcHHHHHHh
Confidence                                                       334456689999999999999999    489999999


Q ss_pred             hCCCCCHHHHHHHHH
Q 006420          619 AVPGKTVIQCKKKFA  633 (646)
Q Consensus       619 ~Vpgrt~~~c~~Ryk  633 (646)
                      .|||||+++++++|-
T Consensus        90 ~LPGRTDNeIKN~Wn  104 (238)
T KOG0048|consen   90 RLPGRTDNEVKNHWN  104 (238)
T ss_pred             hCCCcCHHHHHHHHH
Confidence            999999999999993

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=1.8e-16  Score=172.09  Aligned_cols=68  Identities=43%  Similarity=0.723  Sum_probs=62.4

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   +||.++||+|||+|+++||||+++.               ..+.+.|+.|++||+||+||.+|+.|
T Consensus         4 ~d~y~~Lgv~~---~a~~~eik~ayr~la~~~HpD~~~~---------------~~~~~~f~~i~~Ay~~L~d~~kR~~Y   65 (371)
T PRK14287          4 RDYYEVLGVDR---NASVDEVKKAYRKLARKYHPDVNKA---------------PDAEDKFKEVKEAYDTLSDPQKKAHY   65 (371)
T ss_pred             CCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------hhHHHHHHHHHHHHHHhCcHhHHHHH
Confidence            69999999999   9999999999999999999999863               23578999999999999999999999


Q ss_pred             cccCCC
Q 006420          174 DSTDEF  179 (646)
Q Consensus       174 Ds~~~~  179 (646)
                      |.+++.
T Consensus        66 D~~G~~   71 (371)
T PRK14287         66 DQFGHT   71 (371)
T ss_pred             HhhCCc
Confidence            998753

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=1.6e-16  Score=173.20  Aligned_cols=68  Identities=44%  Similarity=0.704  Sum_probs=62.5

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   .||.++||+|||+|+++||||++++               ..+.++|+.|++||+||+||.+|..
T Consensus         3 ~~d~y~~Lgv~~---~a~~~eik~ayr~la~~~HpD~~~~---------------~~a~~~f~~i~~Ay~vL~d~~kR~~   64 (380)
T PRK14276          3 NTEYYDRLGVSK---DASQDEIKKAYRKLSKKYHPDINKE---------------PGAEEKYKEVQEAYETLSDPQKRAA   64 (380)
T ss_pred             CCCHHHhhCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------cCHHHHHHHHHHHHHHhcCHhhhhh
Confidence            469999999999   9999999999999999999999873               2357899999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.+++
T Consensus        65 YD~~G~   70 (380)
T PRK14276         65 YDQYGA   70 (380)
T ss_pred             HhhcCC
Confidence            999875

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=1.5e-16  Score=172.82  Aligned_cols=68  Identities=37%  Similarity=0.655  Sum_probs=62.6

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   +||.++||+|||+||++||||++++               ..+.++|+.|++||+|||||.+|+.
T Consensus         3 ~~dyY~~Lgv~~---~a~~~eik~ayrkla~~~HPD~n~~---------------~~a~~~F~~i~~AyevLsD~~KR~~   64 (372)
T PRK14296          3 KKDYYEVLGVSK---TASEQEIRQAYRKLAKQYHPDLNKS---------------PDAHDKMVEINEAADVLLDKDKRKQ   64 (372)
T ss_pred             CCCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------chHHHHHHHHHHHHHHhcCHHHhhh
Confidence            469999999999   9999999999999999999999873               2467899999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.++.
T Consensus        65 YD~~G~   70 (372)
T PRK14296         65 YDQFGH   70 (372)
T ss_pred             hhhccc
Confidence            999875

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=2.7e-16  Score=170.47  Aligned_cols=68  Identities=51%  Similarity=0.812  Sum_probs=62.9

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   +||.++||+|||+|+++||||++++              ...+.++|+.|++||+||+||.+|..|
T Consensus         3 ~d~y~iLgv~~---~a~~~eIk~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~kr~~y   65 (365)
T PRK14285          3 RDYYEILGLSK---GASKDEIKKAYRKIAIKYHPDKNKG--------------NKEAESIFKEATEAYEVLIDDNKRAQY   65 (365)
T ss_pred             CCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC--------------CHHHHHHHHHHHHHHHHHcCcchhHHH
Confidence            69999999999   9999999999999999999999874              234678999999999999999999999


Q ss_pred             cccCC
Q 006420          174 DSTDE  178 (646)
Q Consensus       174 Ds~~~  178 (646)
                      |.++.
T Consensus        66 d~~g~   70 (365)
T PRK14285         66 DRFGH   70 (365)
T ss_pred             HhcCc
Confidence            99875

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=3.9e-16  Score=169.47  Aligned_cols=71  Identities=41%  Similarity=0.749  Sum_probs=63.7

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   +||.++||+|||+|+++||||+++..             ...+.++|+.|++||+||+||.+|+.
T Consensus         3 ~~d~y~~lgv~~---~a~~~eik~ayr~la~~~HPD~~~~~-------------~~~a~~~f~~i~~Ay~vL~d~~kR~~   66 (369)
T PRK14282          3 KKDYYEILGVSR---NATQEEIKRAYKRLVKEWHPDRHPEN-------------RKEAEQKFKEIQEAYEVLSDPQKRAM   66 (369)
T ss_pred             CCChHHhcCCCC---CCCHHHHHHHHHHHHHHHCCCCCccc-------------hhHHHHHHHHHHHHHHHhcChhhHHH
Confidence            369999999999   99999999999999999999998741             23468899999999999999999999


Q ss_pred             hcccCCC
Q 006420          173 YDSTDEF  179 (646)
Q Consensus       173 YDs~~~~  179 (646)
                      ||.++..
T Consensus        67 YD~~g~~   73 (369)
T PRK14282         67 YDRFGYV   73 (369)
T ss_pred             HhhcCcc
Confidence            9998753

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=2.1e-16  Score=172.70  Aligned_cols=71  Identities=42%  Similarity=0.643  Sum_probs=64.6

Q ss_pred             CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420           91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR  170 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR  170 (646)
                      |...|||+||||++   +||.++||+|||+||++||||++++              ...+.++|+.|++||+|||||.+|
T Consensus         6 ~~~~Dyy~~Lgv~~---~a~~~eik~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vLsD~~KR   68 (392)
T PRK14279          6 WVEKDFYKELGVSS---DASAEEIKKAYRKLARELHPDANPG--------------DPAAEERFKAVSEAHDVLSDPAKR   68 (392)
T ss_pred             hcccCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------ChHHHHHHHHHHHHHHHhcchhhh
Confidence            44579999999999   9999999999999999999999974              235688999999999999999999


Q ss_pred             hhhcccCC
Q 006420          171 RIYDSTDE  178 (646)
Q Consensus       171 ~~YDs~~~  178 (646)
                      +.||.++.
T Consensus        69 ~~YD~~G~   76 (392)
T PRK14279         69 KEYDETRR   76 (392)
T ss_pred             hHHHHhhh
Confidence            99999864

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=3.7e-16  Score=170.00  Aligned_cols=67  Identities=46%  Similarity=0.758  Sum_probs=61.9

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   +||.++||+|||+||++||||+++.               ..+.++|+.|++||+||+||.+|+.|
T Consensus         5 ~d~y~iLgv~~---~a~~~eik~ayr~la~~~HPD~~~~---------------~~~~~~f~~i~~Ay~vL~d~~kR~~Y   66 (377)
T PRK14298          5 RDYYEILGLSK---DASVEDIKKAYRKLAMKYHPDKNKE---------------PDAEEKFKEISEAYAVLSDAEKRAQY   66 (377)
T ss_pred             CCHHHhhCCCC---CCCHHHHHHHHHHHHHHhCccccCC---------------hhHHHHHHHHHHHHHHhcchHhhhhh
Confidence            59999999999   9999999999999999999999873               23578999999999999999999999


Q ss_pred             cccCC
Q 006420          174 DSTDE  178 (646)
Q Consensus       174 Ds~~~  178 (646)
                      |.++.
T Consensus        67 D~~G~   71 (377)
T PRK14298         67 DRFGH   71 (377)
T ss_pred             hhcCc
Confidence            99875

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=5.5e-16  Score=168.76  Aligned_cols=67  Identities=43%  Similarity=0.731  Sum_probs=62.1

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   +||.++||+|||+||++||||+++.               ..+.++|+.|++||+||+||.+|+.|
T Consensus         3 ~d~y~iLgv~~---~a~~~eik~ayr~la~~~hpD~~~~---------------~~a~~~f~~i~~Ay~vL~d~~~r~~Y   64 (378)
T PRK14278          3 RDYYGLLGVSR---NASDAEIKRAYRKLARELHPDVNPD---------------EEAQEKFKEISVAYEVLSDPEKRRIV   64 (378)
T ss_pred             CCcceecCCCC---CCCHHHHHHHHHHHHHHHCCCCCCc---------------HHHHHHHHHHHHHHHHhchhhhhhhh
Confidence            68999999999   9999999999999999999999973               34678999999999999999999999


Q ss_pred             cccCC
Q 006420          174 DSTDE  178 (646)
Q Consensus       174 Ds~~~  178 (646)
                      |.++.
T Consensus        65 D~~G~   69 (378)
T PRK14278         65 DLGGD   69 (378)
T ss_pred             hccCC
Confidence            99864

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=5.1e-16  Score=168.42  Aligned_cols=69  Identities=49%  Similarity=0.835  Sum_probs=63.2

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   +||.++||+|||+||++||||++++              ...+.+.|+.|++||+||+||.+|..
T Consensus         3 ~~d~y~~lgv~~---~a~~~eik~ayr~la~~~HPD~~~~--------------~~~~~~~f~~~~~Ay~vL~d~~~r~~   65 (366)
T PRK14294          3 KRDYYEILGVTR---DASEEEIKKSYRKLAMKYHPDRNPG--------------DKEAEELFKEAAEAYEVLSDPKKRGI   65 (366)
T ss_pred             CCChHHHhCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC--------------chHHHHHHHHHHHHHHHhccHHHHHH
Confidence            469999999999   9999999999999999999999974              23467899999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.+++
T Consensus        66 yD~~G~   71 (366)
T PRK14294         66 YDQYGH   71 (366)
T ss_pred             HHhhcc
Confidence            999875

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=6e-16  Score=168.69  Aligned_cols=69  Identities=45%  Similarity=0.797  Sum_probs=63.3

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   +||.++||+|||+|+++||||++++              ...+.+.|+.|++||+||+||.+|..
T Consensus         3 ~~d~y~~Lgv~~---~a~~~~ik~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~~r~~   65 (380)
T PRK14297          3 SKDYYEVLGLEK---GASDDEIKKAFRKLAIKYHPDKNKG--------------NKEAEEKFKEINEAYQVLSDPQKKAQ   65 (380)
T ss_pred             CCChHHhhCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------cHHHHHHHHHHHHHHHHhcCHhhhCc
Confidence            369999999999   9999999999999999999999974              23467899999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.++.
T Consensus        66 yD~~G~   71 (380)
T PRK14297         66 YDQFGT   71 (380)
T ss_pred             hhhcCc
Confidence            999875

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=7.9e-16  Score=162.05  Aligned_cols=69  Identities=45%  Similarity=0.761  Sum_probs=62.8

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   +||.++||+|||+|+++||||+++.               ..+.+.|+.|++||+||+||.+|+.
T Consensus         3 ~~d~y~vLgv~~---~a~~~eik~ayr~la~~~HPD~~~~---------------~~~~~~f~~i~~Ay~~L~d~~kr~~   64 (291)
T PRK14299          3 YKDYYAILGVPK---NASQDEIKKAFKKLARKYHPDVNKS---------------PGAEEKFKEINEAYTVLSDPEKRRI   64 (291)
T ss_pred             CCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------hhHHHHHHHHHHHHHHhcCHHHHHH
Confidence            469999999999   9999999999999999999999873               2357899999999999999999999


Q ss_pred             hcccCCC
Q 006420          173 YDSTDEF  179 (646)
Q Consensus       173 YDs~~~~  179 (646)
                      ||.++..
T Consensus        65 yD~~g~~   71 (291)
T PRK14299         65 YDTYGTT   71 (291)
T ss_pred             HHhcCCc
Confidence            9998753

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=5.5e-16  Score=168.49  Aligned_cols=69  Identities=49%  Similarity=0.775  Sum_probs=63.2

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   +||.++||+|||+|+++||||++++              ...+.++|+.|++||+||+||.+|..
T Consensus         3 ~~~~y~~Lgv~~---~a~~~~ik~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~kr~~   65 (373)
T PRK14301          3 QRDYYEVLGVSR---DASEDEIKKAYRKLALQYHPDRNPD--------------NPEAEQKFKEAAEAYEVLRDAEKRAR   65 (373)
T ss_pred             CCChHHhcCCCC---CCCHHHHHHHHHHHHHHhCCCcCCC--------------ChHHHHHHHHHHHHHHHhcchhhhhh
Confidence            369999999999   9999999999999999999999974              23467899999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.++.
T Consensus        66 yD~~g~   71 (373)
T PRK14301         66 YDRFGH   71 (373)
T ss_pred             hhhccc
Confidence            999875

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=8e-16  Score=167.97  Aligned_cols=69  Identities=46%  Similarity=0.787  Sum_probs=63.2

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   +||.++||+|||+||++||||++++              ...++++|+.|++||+||+||.+|..
T Consensus         4 ~~d~y~~Lgv~~---~a~~~eik~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~kr~~   66 (386)
T PRK14277          4 KKDYYEILGVDR---NATEEEIKKAYRRLAKKYHPDLNPG--------------DKEAEQKFKEINEAYEILSDPQKRAQ   66 (386)
T ss_pred             CCCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCCCcCCC--------------chHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            369999999999   9999999999999999999999974              23467899999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.++.
T Consensus        67 yD~~G~   72 (386)
T PRK14277         67 YDQFGH   72 (386)
T ss_pred             HHhhcc
Confidence            999875

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1e-15  Score=164.14  Aligned_cols=245  Identities=36%  Similarity=0.487  Sum_probs=190.2

Q ss_pred             CCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhhcccCCCCCCCCC-
Q 006420          107 YLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPA-  185 (646)
Q Consensus       107 ~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~YDs~~~~~~~~p~-  185 (646)
                      +.++..+|..+|+..++.+||++....   +       .......+.|++|.+||.||++...|..+|+.+.|.+.+|. 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~   71 (335)
T KOG0724|consen    2 GLASEDELRLAYREMALKSHPEKKSFY---E-------KLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLE   71 (335)
T ss_pred             CcccHHHHHHHHHHHhhhcCcHHHHHH---H-------HhhhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccc
Confidence            457889999999999999999998520   0       00223578899999999999998888999999989998988 


Q ss_pred             CCCCCchHHhhhhhhccCCCCccCccCCCCCCCCCChHHHHhhhhHHhcccccccCCCccccchhhhccHHHHHHH----
Q 006420          186 DCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWM----  261 (646)
Q Consensus       186 ~~~~~~Ff~~f~~~F~~~~r~s~~~~~P~lG~~~s~~e~v~~FY~fw~~F~SwR~f~~~de~~~e~~e~R~~rR~~----  261 (646)
                      ......|+.++++.|..+++|+..+++|.|+..+.+...|..||.||+.|.+|+.|...++.+.....++...+++    
T Consensus        72 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~  151 (335)
T KOG0724|consen   72 KRLEDKIEEYIGLVFDVNIRESGQKPFPKYGKSDTSLAEVEEFYNFWPKFKSWRQYPQKDEPDEEDSENRSQSRYSGGTQ  151 (335)
T ss_pred             cccchhHHhhhhhHHHHhhhhccCCCccccCccccccccccccCCccccccccccCCCCCCcccccccchhhhhhccccc
Confidence            6778899999999999999999999999999998888899999999999999999999987765555888899988    


Q ss_pred             -HHHhHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 006420          262 -ERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAKYLAKK----LQEEEAARAAEEERRRKVE  336 (646)
Q Consensus       262 -Ek~N~k~r~k~kke~~~rir~LV~~a~~~DpRik~~keeek~~k~~~k~~k~~~~r----~~~ee~~~~~eeer~~ke~  336 (646)
                       .+.|...+.+.+.....+++.||.+++..|+++..+...+.....+.........+    ...........+++.++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~~~~~~~s~  231 (335)
T KOG0724|consen  152 RGKSNAEELRRKGTPVTERERKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSGEEEKRRKSI  231 (335)
T ss_pred             ccccchhhhhhccchhHHHHHHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhccccccchh
Confidence             48889999999999999999999999999999999998888877777665543332    1222222222233334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006420          337 EEKRVAEVALQQKKVKEKEKKLLRK  361 (646)
Q Consensus       337 ee~~~~e~~~~~KK~ke~~Kk~lkK  361 (646)
                      +...........+......+...++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~  256 (335)
T KOG0724|consen  232 EDITTASEAEDRKKEDEAAKEAKKK  256 (335)
T ss_pred             hhhhccchhhhhhcchhhhhhhhcc
Confidence            4333333333444444444444444

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.60  E-value=3e-15  Score=172.48  Aligned_cols=72  Identities=28%  Similarity=0.379  Sum_probs=65.1

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      .....+||+||||++   +||..+||+|||+||++||||++++              . .+...|+.|++||+|||||.+
T Consensus       569 ~~~d~dYYdILGVs~---dAS~~EIKKAYRKLAlkyHPDKN~~--------------~-~A~ekFq~I~EAYeVLSDp~k  630 (1136)
T PTZ00341        569 EIPDTLFYDILGVGV---NADMKEISERYFKLAENYYPPKRSG--------------N-EGFHKFKKINEAYQILGDIDK  630 (1136)
T ss_pred             cCCCCChHHHcCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC--------------c-hHHHHHHHHHHHHHHhCCHHH
Confidence            345689999999999   9999999999999999999999984              1 356799999999999999999


Q ss_pred             hhhhcccCCC
Q 006420          170 RRIYDSTDEF  179 (646)
Q Consensus       170 R~~YDs~~~~  179 (646)
                      |+.||.+|..
T Consensus       631 Rk~YD~~G~~  640 (1136)
T PTZ00341        631 KKMYNKFGYD  640 (1136)
T ss_pred             HHHHhhcccc
Confidence            9999998764

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=9.2e-16  Score=166.95  Aligned_cols=67  Identities=43%  Similarity=0.735  Sum_probs=62.0

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   +||.++||+|||+|+++||||++++               ..+.++|+.|++||+|||||.+|..|
T Consensus         4 ~~~y~iLgv~~---~a~~~eik~ayr~la~~~HpD~~~~---------------~~a~~~f~~i~~Ay~vL~d~~kr~~y   65 (376)
T PRK14280          4 RDYYEVLGVSK---SASKDEIKKAYRKLSKKYHPDINKE---------------EGADEKFKEISEAYEVLSDDQKRAQY   65 (376)
T ss_pred             CChHHhhCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------ccHHHHHHHHHHHHHHhccHhHHHHH
Confidence            69999999999   9999999999999999999999873               23578999999999999999999999


Q ss_pred             cccCC
Q 006420          174 DSTDE  178 (646)
Q Consensus       174 Ds~~~  178 (646)
                      |.++.
T Consensus        66 D~~G~   70 (376)
T PRK14280         66 DQFGH   70 (376)
T ss_pred             HhcCc
Confidence            99875

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.60  E-value=1.2e-15  Score=161.80  Aligned_cols=93  Identities=32%  Similarity=0.558  Sum_probs=73.1

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   .||.++||+|||+|+++||||+++.               ..+.+.|+.|++||+||+||.+|..|
T Consensus         4 ~d~y~~Lgv~~---~a~~~eik~ayr~la~k~HPD~~~~---------------~~~~~~f~~i~~Ay~~L~~~~kr~~y   65 (306)
T PRK10266          4 KDYYAIMGVKP---TDDLKTIKTAYRRLARKYHPDVSKE---------------PDAEARFKEVAEAWEVLSDEQRRAEY   65 (306)
T ss_pred             CChHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------ccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            69999999999   9999999999999999999999763               24678999999999999999999999


Q ss_pred             cccCCC------CCCCCC----CCCCCchHHhhhhhhccCC
Q 006420          174 DSTDEF------DDAIPA----DCAPQDFYKVFGPAFTRNG  204 (646)
Q Consensus       174 Ds~~~~------~~~~p~----~~~~~~Ff~~f~~~F~~~~  204 (646)
                      |.++..      ....+.    .....+|.++|+.+|+..+
T Consensus        66 D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~g~~~  106 (306)
T PRK10266         66 DQLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIFSSIFGQHA  106 (306)
T ss_pred             HHhhccccCcccccccccCCCCCCCCCCHHHHHHHHhCCCC
Confidence            987532      111111    1123457778888776533

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=1e-15  Score=167.69  Aligned_cols=68  Identities=53%  Similarity=0.835  Sum_probs=62.6

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   .||.++||+|||+|+++||||++++              ...+.+.|+.|++||+||+||.+|+.|
T Consensus         3 ~d~y~iLgv~~---~a~~~eikkayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~~r~~y   65 (397)
T PRK14281          3 RDYYEVLGVSR---SADKDEIKKAYRKLALKYHPDKNPD--------------NKEAEEHFKEVNEAYEVLSNDDKRRRY   65 (397)
T ss_pred             CChhhhcCCCC---CCCHHHHHHHHHHHHHHHCCCcCCC--------------chHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            59999999999   9999999999999999999999974              234678999999999999999999999


Q ss_pred             cccCC
Q 006420          174 DSTDE  178 (646)
Q Consensus       174 Ds~~~  178 (646)
                      |.++.
T Consensus        66 D~~g~   70 (397)
T PRK14281         66 DQFGH   70 (397)
T ss_pred             hhccc
Confidence            99875

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=1.5e-15  Score=165.54  Aligned_cols=67  Identities=48%  Similarity=0.809  Sum_probs=61.9

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   .||.++||+|||+|+++||||++++               ..+.++|+.|++||+|||||.+|+.|
T Consensus         3 ~d~Y~~Lgv~~---~a~~~~ik~ayr~la~~~HPD~~~~---------------~~~~~~f~~i~~Ay~vLsd~~kR~~Y   64 (382)
T PRK14291          3 KDYYEILGVSR---NATQEEIKKAYRRLARKYHPDFNKN---------------PEAEEKFKEINEAYQVLSDPEKRKLY   64 (382)
T ss_pred             CCHHHhhCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC---------------ccHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            69999999999   9999999999999999999999973               23578999999999999999999999


Q ss_pred             cccCC
Q 006420          174 DSTDE  178 (646)
Q Consensus       174 Ds~~~  178 (646)
                      |.++.
T Consensus        65 D~~g~   69 (382)
T PRK14291         65 DQFGH   69 (382)
T ss_pred             hhhcc
Confidence            99865

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=2.1e-15  Score=164.00  Aligned_cols=69  Identities=49%  Similarity=0.858  Sum_probs=62.9

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   +||.++||+|||+|+++||||++++              ...+.+.|+.|++||+||+||.+|..
T Consensus         3 ~~d~y~iLgv~~---~as~~eik~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~~L~d~~~r~~   65 (371)
T PRK10767          3 KRDYYEVLGVSR---NASEDEIKKAYRKLAMKYHPDRNPG--------------DKEAEEKFKEIKEAYEVLSDPQKRAA   65 (371)
T ss_pred             CCChHHhcCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC--------------cHHHHHHHHHHHHHHHHhcchhhhhH
Confidence            369999999999   9999999999999999999999874              23467899999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.++.
T Consensus        66 yd~~g~   71 (371)
T PRK10767         66 YDQYGH   71 (371)
T ss_pred             hhhccc
Confidence            999865

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.1e-15  Score=154.72  Aligned_cols=72  Identities=46%  Similarity=0.783  Sum_probs=65.9

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      +-...|+|+||||++   +||.++||++||+|+++||||++++              .+++.++|+.|+.||+||+||.+
T Consensus        27 ~~~~~~LYdVLgl~k---~at~d~IKKaYR~L~~k~HPD~~gd--------------~P~~~dkf~eIN~Ay~ILsD~~k   89 (279)
T KOG0716|consen   27 DVIRLDLYDVLGLPK---TATKDEIKKAYRKLALKYHPDKNGD--------------NPEATDKFKEINTAYAILSDPTK   89 (279)
T ss_pred             ccchhHHHHHhCCCc---ccchHHHHHHHHHHHHHhCCCcCCC--------------CchhHHHHHHHHHHHHHhcChhh
Confidence            344789999999999   9999999999999999999999996              35678999999999999999999


Q ss_pred             hhhhcccCC
Q 006420          170 RRIYDSTDE  178 (646)
Q Consensus       170 R~~YDs~~~  178 (646)
                      |..||.++.
T Consensus        90 R~~YD~~g~   98 (279)
T KOG0716|consen   90 RNVYDEYGE   98 (279)
T ss_pred             hhhHHHhhh
Confidence            999999864

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.5e-15  Score=150.36  Aligned_cols=92  Identities=36%  Similarity=0.654  Sum_probs=74.7

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|+|.||||..   +||+.+|++||++|+|+||||+++-            ..+.++...|+.|+.||.||||..+|+.
T Consensus        13 ~~d~YevLGVer---~a~~~eIrkAY~klal~~HPDk~~e------------ed~~ea~~kFq~l~k~y~iLsDeekR~~   77 (264)
T KOG0719|consen   13 KKDLYEVLGVER---DATDKEIRKAYHKLALRLHPDKNHE------------EDKVEATEKFQQLQKAYQILSDEEKRAV   77 (264)
T ss_pred             ccCHHHHhhhcc---cCCHHHHHHHHHHHHHHhCCCcchh------------hhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            349999999999   9999999999999999999999972            2366789999999999999999999999


Q ss_pred             hcccCCCCCCCCCCCCCCchHHhhhhhhc
Q 006420          173 YDSTDEFDDAIPADCAPQDFYKVFGPAFT  201 (646)
Q Consensus       173 YDs~~~~~~~~p~~~~~~~Ff~~f~~~F~  201 (646)
                      ||..|..++.. .+ -..++-++|..+|.
T Consensus        78 YDetG~idd~~-~d-~~~~~~e~~~~iyk  104 (264)
T KOG0719|consen   78 YDETGSIDDES-GD-IDEDWLEFWRAIYK  104 (264)
T ss_pred             HhccCCCCCcc-ch-hhhHHHHHHHHHHh
Confidence            99998776321 11 12344455666554

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.8e-15  Score=157.88  Aligned_cols=89  Identities=37%  Similarity=0.597  Sum_probs=73.8

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      +.|||.||||+.   ++|..+|++|||.++|+||||||++              ++.+.+.|+.|.+||+||+|+..|..
T Consensus         4 ~~dyY~lLgi~~---~at~~eIkKaYr~kaL~~HPDKNp~--------------dP~A~ekFq~L~eAy~VL~D~~~R~~   66 (296)
T KOG0691|consen    4 DTDYYDLLGISE---DATDAEIKKAYRKKALQYHPDKNPG--------------DPQAAEKFQELSEAYEVLSDEESRAA   66 (296)
T ss_pred             cchHHHHhCCCC---CCCHHHHHHHHHHHHHhcCCCCCCC--------------ChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            689999999999   9999999999999999999999997              45589999999999999999999999


Q ss_pred             hcccCCCCCCCCCCCCCCchHHhhhhhhc
Q 006420          173 YDSTDEFDDAIPADCAPQDFYKVFGPAFT  201 (646)
Q Consensus       173 YDs~~~~~~~~p~~~~~~~Ff~~f~~~F~  201 (646)
                      ||..+...-...   ...+-+++|+..|+
T Consensus        67 YDk~~k~~~~~~---~~~d~~~~~r~~f~   92 (296)
T KOG0691|consen   67 YDKLRKSGSSAQ---GREDQADGFRKKFG   92 (296)
T ss_pred             HHHHhhhcccch---hhhhHHHHHHHHhh
Confidence            999865332211   23344556666555

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.57  E-value=2.6e-15  Score=122.46  Aligned_cols=64  Identities=44%  Similarity=0.793  Sum_probs=59.0

Q ss_pred             cccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhhc
Q 006420           95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYD  174 (646)
Q Consensus        95 d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~YD  174 (646)
                      |||+||||+.   +++.++|+++|+++++.+|||++++..             ..+...|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~---~~~~~eik~~y~~l~~~~HPD~~~~~~-------------~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPP---DASDEEIKKAYRRLSKQYHPDKNSGDE-------------AEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTT---TSSHHHHHHHHHHHHHHTSTTTGTSTH-------------HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCC---CCCHHHHHHHHHhhhhccccccchhhh-------------hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6999999999   999999999999999999999998521             346889999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=2.6e-15  Score=157.52  Aligned_cols=86  Identities=36%  Similarity=0.507  Sum_probs=72.1

Q ss_pred             cccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhhc
Q 006420           95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYD  174 (646)
Q Consensus        95 d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~YD  174 (646)
                      |||+||||+.   .||..|||.||++|+++||||.+.+               ..+.++|+.|.+|||||+|+.+|..||
T Consensus        44 d~Y~vLgv~~---~At~~EIK~Af~~LaKkyHPD~n~~---------------~~a~~kF~eI~~AYEiLsd~eKR~~YD  105 (288)
T KOG0715|consen   44 DYYKVLGVSR---NATLSEIKSAFRKLAKKYHPDVNKD---------------KEASKKFKEISEAYEILSDEEKRQEYD  105 (288)
T ss_pred             chhhhhCcCC---CCCHHHHHHHHHHHHHhhCCCCCCC---------------cchhhHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999999   9999999999999999999999994               367899999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCchHHhhhhhhcc
Q 006420          175 STDEFDDAIPADCAPQDFYKVFGPAFTR  202 (646)
Q Consensus       175 s~~~~~~~~p~~~~~~~Ff~~f~~~F~~  202 (646)
                      ..+...    .....++++++|..+|+.
T Consensus       106 ~~~~~~----~~~~~g~~~~~~~~~~~~  129 (288)
T KOG0715|consen  106 VYGLEQ----HGEFGGNPFDVFLEFFGG  129 (288)
T ss_pred             Hhhhhc----cccccCCccchHHHhhcc
Confidence            986543    111223556666666665

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=2e-15  Score=164.40  Aligned_cols=68  Identities=41%  Similarity=0.691  Sum_probs=62.6

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   +||.++||+|||+||++||||++++               ..+.+.|+.|++||+|||||.+|+.
T Consensus         4 ~~d~y~~Lgv~~---~a~~~eik~ayr~la~~~HPD~~~~---------------~~a~~~f~~i~~Ay~~Lsd~~kR~~   65 (378)
T PRK14283          4 KRDYYEVLGVDR---NADKKEIKKAYRKLARKYHPDVSEE---------------EGAEEKFKEISEAYAVLSDDEKRQR   65 (378)
T ss_pred             cCChHHhhCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------ccHHHHHHHHHHHHHHhchhHHHHH
Confidence            579999999999   9999999999999999999999873               2367899999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.++.
T Consensus        66 YD~~G~   71 (378)
T PRK14283         66 YDQFGH   71 (378)
T ss_pred             Hhhhcc
Confidence            999875

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.56  E-value=3.9e-15  Score=160.95  Aligned_cols=66  Identities=50%  Similarity=0.823  Sum_probs=60.8

Q ss_pred             cccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhhc
Q 006420           95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYD  174 (646)
Q Consensus        95 d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~YD  174 (646)
                      |||+||||++   .||.++||+|||+|+++||||+++.               ..+.+.|+.|++||+||+||.+|..||
T Consensus         1 d~y~~Lgv~~---~a~~~~ik~ayr~la~~~HPD~~~~---------------~~~~~~f~~i~~Ay~vL~d~~~R~~yd   62 (354)
T TIGR02349         1 DYYEILGVSK---DASEEEIKKAYRKLAKKYHPDRNKD---------------KEAEEKFKEINEAYEVLSDPEKRAQYD   62 (354)
T ss_pred             ChHHhCCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC---------------ccHHHHHHHHHHHHHHhhChHHHHhhh
Confidence            7999999999   9999999999999999999999862               235789999999999999999999999


Q ss_pred             ccCC
Q 006420          175 STDE  178 (646)
Q Consensus       175 s~~~  178 (646)
                      .++.
T Consensus        63 ~~g~   66 (354)
T TIGR02349        63 QFGH   66 (354)
T ss_pred             hccc
Confidence            9865

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=2.6e-15  Score=160.82  Aligned_cols=75  Identities=43%  Similarity=0.692  Sum_probs=67.9

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      +..+.|||.+|||++   +||.+||++|||++++.|||||..++           ..+..+++.|..|+.||||||||.+
T Consensus         5 e~~e~e~Ya~LNlpk---dAt~eeI~~AYrr~~~lfHPDkh~dp-----------d~K~~AE~~F~~i~~AyEVLsDp~k   70 (546)
T KOG0718|consen    5 ELDEIELYALLNLPK---DATDEEIKKAYRRLSRLFHPDKHTDP-----------DQKKAAEEKFQRIQRAYEVLSDPQK   70 (546)
T ss_pred             ccchhhHHHHhCCCc---ccCHHHHHHHHHHHHHhcCCcccCCh-----------hHHHHHHHHHHHHHHHHHHhcChHH
Confidence            456679999999999   99999999999999999999999852           2366789999999999999999999


Q ss_pred             hhhhcccCC
Q 006420          170 RRIYDSTDE  178 (646)
Q Consensus       170 R~~YDs~~~  178 (646)
                      |.+||.+|.
T Consensus        71 RaIYD~~G~   79 (546)
T KOG0718|consen   71 RAIYDNYGE   79 (546)
T ss_pred             HHHHHHhhh
Confidence            999999875

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=4.9e-15  Score=161.91  Aligned_cols=69  Identities=48%  Similarity=0.804  Sum_probs=63.4

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   .||.++|++|||+|+++||||++++              ...+.++|+.|++||+||+||.+|+.
T Consensus         4 ~~~~y~~Lgv~~---~a~~~eik~ayr~la~~~HpD~~~~--------------~~~a~~~f~~i~~Ay~~L~d~~~R~~   66 (386)
T PRK14289          4 KRDYYEVLGVSK---TATVDEIKKAYRKKAIQYHPDKNPG--------------DKEAEEKFKEAAEAYDVLSDPDKRSR   66 (386)
T ss_pred             cCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC--------------ChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            469999999999   9999999999999999999999974              33568899999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.++.
T Consensus        67 yD~~G~   72 (386)
T PRK14289         67 YDQFGH   72 (386)
T ss_pred             HHHhcc
Confidence            999865

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=6e-15  Score=160.04  Aligned_cols=69  Identities=48%  Similarity=0.786  Sum_probs=62.9

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   +||..+||+|||+|+++||||+++..             ...+.+.|+.|++||+||+||.+|+.|
T Consensus         3 ~d~y~vLgv~~---~a~~~eik~ayr~la~~~HPD~~~~~-------------~~~a~~~f~~i~~Ay~~L~d~~~r~~y   66 (365)
T PRK14290          3 KDYYKILGVDR---NASQEDIKKAFRELAKKWHPDLHPGN-------------KAEAEEKFKEISEAYEVLSDPQKRRQY   66 (365)
T ss_pred             CChhhhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCc-------------hhHHHHHHHHHHHHHHHhcChhhhhhh
Confidence            69999999999   99999999999999999999998741             224688999999999999999999999


Q ss_pred             cccCC
Q 006420          174 DSTDE  178 (646)
Q Consensus       174 Ds~~~  178 (646)
                      |.++.
T Consensus        67 d~~G~   71 (365)
T PRK14290         67 DQTGT   71 (365)
T ss_pred             cccCC
Confidence            99875

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=3.7e-15  Score=163.05  Aligned_cols=68  Identities=49%  Similarity=0.793  Sum_probs=62.7

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   +||.++||+|||+||++||||++++              ...+.+.|+.|++||+||+||.+|+.|
T Consensus         1 ~d~y~iLgv~~---~a~~~eikkayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~kR~~Y   63 (391)
T PRK14284          1 MDYYTILGVSK---TASPEEIKKAYRKLAVKYHPDKNPG--------------DAEAEKRFKEVSEAYEVLSDAQKRESY   63 (391)
T ss_pred             CCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------chHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            48999999999   9999999999999999999999984              234678999999999999999999999


Q ss_pred             cccCC
Q 006420          174 DSTDE  178 (646)
Q Consensus       174 Ds~~~  178 (646)
                      |.++.
T Consensus        64 D~~G~   68 (391)
T PRK14284         64 DRYGK   68 (391)
T ss_pred             Hhccc
Confidence            99875

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=4.6e-15  Score=162.09  Aligned_cols=67  Identities=43%  Similarity=0.727  Sum_probs=61.6

Q ss_pred             ccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006420           92 NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR  171 (646)
Q Consensus        92 k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~  171 (646)
                      ...|||+||||++   +||.++||+|||+|+++||||++++              ...+.+.|+.|++||+||+||.+|+
T Consensus         7 ~~~d~y~~Lgv~~---~a~~~eik~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~~r~   69 (389)
T PRK14295          7 IEKDYYKVLGVPK---DATEAEIKKAYRKLAREYHPDANKG--------------DAKAEERFKEISEAYDVLSDEKKRK   69 (389)
T ss_pred             cccCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCCCcCCC--------------chhHHHHHHHHHHHHHHHCchhhHH
Confidence            4579999999999   9999999999999999999999874              2346889999999999999999999


Q ss_pred             hhcc
Q 006420          172 IYDS  175 (646)
Q Consensus       172 ~YDs  175 (646)
                      .||.
T Consensus        70 ~yD~   73 (389)
T PRK14295         70 EYDE   73 (389)
T ss_pred             HHHH
Confidence            9998

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=1.1e-14  Score=158.47  Aligned_cols=67  Identities=43%  Similarity=0.716  Sum_probs=62.0

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   .||.++||+|||+|+++||||+++.               ..+.++|+.|++||+||+||.+|+.|
T Consensus         2 ~d~y~~Lgv~~---~a~~~~ik~ayr~l~~~~hpD~~~~---------------~~a~~~~~~i~~Ay~vL~d~~~r~~y   63 (371)
T PRK14292          2 MDYYELLGVSR---TASADEIKSAYRKLALKYHPDRNKE---------------KGAAEKFAQINEAYAVLSDAEKRAHY   63 (371)
T ss_pred             CChHHHcCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC---------------hhHHHHHHHHHHHHHHhcchhhhhhH
Confidence            58999999999   9999999999999999999999973               23578999999999999999999999


Q ss_pred             cccCC
Q 006420          174 DSTDE  178 (646)
Q Consensus       174 Ds~~~  178 (646)
                      |.++.
T Consensus        64 d~~G~   68 (371)
T PRK14292         64 DRFGT   68 (371)
T ss_pred             hhcCC
Confidence            99875

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.4e-14  Score=157.58  Aligned_cols=68  Identities=43%  Similarity=0.711  Sum_probs=61.9

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   +||.++||+|||+|+++||||+++.               ..++++|+.|++||+||+||.+|+.
T Consensus         2 ~~d~y~vLgv~~---~a~~~eik~ayr~la~~~HPD~~~~---------------~~a~~~f~~i~~Ay~vL~~~~~R~~   63 (374)
T PRK14293          2 AADYYEILGVSR---DADKDELKRAYRRLARKYHPDVNKE---------------PGAEDRFKEINRAYEVLSDPETRAR   63 (374)
T ss_pred             CCChhhhcCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC---------------cCHHHHHHHHHHHHHHHhchHHHHH
Confidence            369999999999   9999999999999999999999873               2357899999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.++.
T Consensus        64 yd~~g~   69 (374)
T PRK14293         64 YDQFGE   69 (374)
T ss_pred             Hhhccc
Confidence            999865

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=2.7e-14  Score=155.35  Aligned_cols=67  Identities=40%  Similarity=0.696  Sum_probs=61.4

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   +||.++||+|||+++++||||+++.               ..+.+.|+.|++||+||+||.+|..|
T Consensus         3 ~~~y~iLgv~~---~as~~eik~ayr~la~~~HPD~~~~---------------~~~~~~f~~i~~Ay~~L~d~~~r~~y   64 (372)
T PRK14300          3 QDYYQILGVSK---TASQADLKKAYLKLAKQYHPDTTDA---------------KDAEKKFKEINAAYDVLKDEQKRAAY   64 (372)
T ss_pred             CChHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------cCHHHHHHHHHHHHHHhhhHhHhhHH
Confidence            69999999999   9999999999999999999999863               12567999999999999999999999


Q ss_pred             cccCC
Q 006420          174 DSTDE  178 (646)
Q Consensus       174 Ds~~~  178 (646)
                      |.++.
T Consensus        65 D~~G~   69 (372)
T PRK14300         65 DRFGH   69 (372)
T ss_pred             Hhccc
Confidence            99865

>PHA03102 Small T antigen; Reviewed

Probab=99.45  E-value=8.7e-14  Score=132.46  Aligned_cols=66  Identities=29%  Similarity=0.420  Sum_probs=60.0

Q ss_pred             ccccccccccccCCCC--CHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006420           94 QDHYALLGLSHLRYLA--TEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR  171 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~A--t~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~  171 (646)
                      ..+|+||||++   +|  |..+||+|||+++++||||++++                  ++.|+.|++||++|+|+.+|.
T Consensus         5 ~~l~~vLGl~~---~A~~s~~eIKkAYr~la~~~HPDkgg~------------------~e~~k~in~Ay~~L~d~~~r~   63 (153)
T PHA03102          5 KELMDLLGLPR---SAWGNLPLMRKAYLRKCLEFHPDKGGD------------------EEKMKELNTLYKKFRESVKSL   63 (153)
T ss_pred             HHHHHHcCCCC---CCCCCHHHHHHHHHHHHHHHCcCCCch------------------hHHHHHHHHHHHHHhhHHHhc
Confidence            46899999999   99  99999999999999999999752                  468999999999999999999


Q ss_pred             hhcccCCCC
Q 006420          172 IYDSTDEFD  180 (646)
Q Consensus       172 ~YDs~~~~~  180 (646)
                      .||.++...
T Consensus        64 ~yd~~g~~~   72 (153)
T PHA03102         64 RDLDGEEDS   72 (153)
T ss_pred             cccccCCcc
Confidence            999987644

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.41  E-value=2.5e-13  Score=109.04  Aligned_cols=59  Identities=53%  Similarity=0.847  Sum_probs=52.9

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPV  168 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~  168 (646)
                      +|||+||||++   .++.++|+++|+++++.+|||++++.             ...+.+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~---~~~~~~ik~ay~~l~~~~HPD~~~~~-------------~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPR---DASLDEIKKAYRKLALKYHPDKNPGD-------------KEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCc-------------hHHHHHHHHHHHHHHHHHcCCC
Confidence            48999999999   89999999999999999999999841             2346889999999999999985

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=3.9e-13  Score=142.99  Aligned_cols=93  Identities=40%  Similarity=0.648  Sum_probs=76.8

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      ..+..|||.||||+.   .++..+|++|||+++|.||||++.+.             ..+++..|+.|.+||.||+||.+
T Consensus       369 kSkRkd~ykilGi~~---~as~~eikkayrk~AL~~Hpd~~ags-------------q~eaE~kFkevgeAy~il~d~~k  432 (486)
T KOG0550|consen  369 KSKRKDWYKILGISR---NASDDEIKKAYRKLALVHHPDKNAGS-------------QKEAEAKFKEVGEAYTILSDPMK  432 (486)
T ss_pred             HhhhhhHHHHhhhhh---hcccchhhhHHHHHHHHhCCCcCcch-------------hHHHHHHHHHHHHHHHHhcCHHH
Confidence            456789999999999   99999999999999999999999863             35678999999999999999999


Q ss_pred             hhhhcccCCCCCCCCCCCCCCchHHhhhhh
Q 006420          170 RRIYDSTDEFDDAIPADCAPQDFYKVFGPA  199 (646)
Q Consensus       170 R~~YDs~~~~~~~~p~~~~~~~Ff~~f~~~  199 (646)
                      |..||+.-...+... ..+.-+||.+|+.+
T Consensus       433 r~r~dsg~dle~~~~-~~a~~dp~~~~~a~  461 (486)
T KOG0550|consen  433 RVRFDSGQDLEEVGS-GGAGFDPFNIFRAF  461 (486)
T ss_pred             HhhcccccchhhhcC-CCcCcChhhhhhhc
Confidence            999999754433222 22455677777665

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.38  E-value=5.3e-13  Score=105.13  Aligned_cols=55  Identities=51%  Similarity=0.866  Sum_probs=50.3

Q ss_pred             cccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcc
Q 006420           95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLID  166 (646)
Q Consensus        95 d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsD  166 (646)
                      |||+||||+.   .+|.++|+++|+++++.+|||++++              ...+...|..|++||++|+|
T Consensus         1 ~~y~vLgl~~---~~~~~~ik~~y~~l~~~~HPD~~~~--------------~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPP---DASDEEIKKAYRKLALKYHPDKNPD--------------DPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------cHHHHHHHHHHHHHHHHhcC
Confidence            6999999998   9999999999999999999999984              13468899999999999997

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.38  E-value=4.9e-13  Score=139.34  Aligned_cols=78  Identities=38%  Similarity=0.637  Sum_probs=67.9

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      ....+|||.||||.+   +|+..+|.+|||+++++||||-..+           +.++..++.+|..|.-|-+||+||.+
T Consensus       390 qs~kRDYYKILGVkR---nAsKqEI~KAYRKlAqkWHPDNFqd-----------EeEKKkAEKKFIDIAAAKEVLsd~Ek  455 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKR---NASKQEITKAYRKLAQKWHPDNFQD-----------EEEKKKAEKKFIDIAAAKEVLSDPEK  455 (504)
T ss_pred             HhccchHHHHhhhcc---cccHHHHHHHHHHHHHhcCCccccC-----------HHHHHHHHHhhhhHHHHHHhhcCHHH
Confidence            455689999999999   9999999999999999999999885           22356689999999999999999999


Q ss_pred             hhhhccc-CCCCC
Q 006420          170 RRIYDST-DEFDD  181 (646)
Q Consensus       170 R~~YDs~-~~~~~  181 (646)
                      |+.||.. ||.|.
T Consensus       456 RrqFDnGeDPLD~  468 (504)
T KOG0624|consen  456 RRQFDNGEDPLDP  468 (504)
T ss_pred             HhhccCCCCCCCh
Confidence            9999986 34443

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.37  E-value=6.3e-13  Score=150.70  Aligned_cols=67  Identities=39%  Similarity=0.677  Sum_probs=61.4

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   +|+..+||++||+|+++||||++++               ..+...|+.|++||++|+||.+|..|
T Consensus         2 ~DYYeVLGVs~---dAS~eEIKKAYRKLAKKyHPDKn~~---------------~eAeekFqeINEAYEVLSDP~KRa~Y   63 (871)
T TIGR03835         2 RDYYEVLGIDR---DADEQEIKKAFRKLAKKYHPDRNKA---------------PDAASIFAEINEANDVLSNPKKRANY   63 (871)
T ss_pred             CChhHhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------hhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            58999999999   9999999999999999999999873               23567899999999999999999999


Q ss_pred             cccCC
Q 006420          174 DSTDE  178 (646)
Q Consensus       174 Ds~~~  178 (646)
                      |.++.
T Consensus        64 D~fG~   68 (871)
T TIGR03835        64 DKYGH   68 (871)
T ss_pred             hhhcc
Confidence            99765

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=7.8e-13  Score=130.24  Aligned_cols=74  Identities=36%  Similarity=0.630  Sum_probs=65.5

Q ss_pred             CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420           91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR  170 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR  170 (646)
                      .+.-|+|+||||++   .+|+.+||+|||+|+++|||||++.              ....++.|..|.+||..|+|+..|
T Consensus        96 ~~~fDPyEILGl~p---gas~~eIKkaYR~LSik~HPDK~~~--------------~~~~e~~~~~I~KAY~aLTD~~sr  158 (230)
T KOG0721|consen   96 RQKFDPYEILGLDP---GASEKEIKKAYRRLSIKYHPDKQPP--------------EEGDEEFFEAIAKAYQALTDKKSR  158 (230)
T ss_pred             hhcCCcHHhhCCCC---CCCHHHHHHHHHHhhhhhCCCcCCC--------------cchhHHHHHHHHHHHHHhcchhhH
Confidence            34569999999999   9999999999999999999999984              134578999999999999999999


Q ss_pred             hhhcccCCCCC
Q 006420          171 RIYDSTDEFDD  181 (646)
Q Consensus       171 ~~YDs~~~~~~  181 (646)
                      ..|..++..|.
T Consensus       159 eN~ekYG~PDG  169 (230)
T KOG0721|consen  159 ENWEKYGNPDG  169 (230)
T ss_pred             HHHHHhCCCCC
Confidence            99999887543

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.30  E-value=2.8e-12  Score=125.05  Aligned_cols=73  Identities=27%  Similarity=0.425  Sum_probs=61.4

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      +|||+||||++ .|.++..+|+++||+++++||||+..+...         .....+...|..|++||+||+||.+|..|
T Consensus         1 ~~yf~llgl~~-~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~---------~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Y   70 (171)
T PRK05014          1 MDYFTLFGLPA-RYDIDTQLLASRYQELQRQFHPDKFANASE---------RERLLAVQQAATINDAYQTLKHPLKRAEY   70 (171)
T ss_pred             CCHHHHCCCCC-CCCCCHHHHHHHHHHHHHHhCcCCCCCCcH---------HHHHHHHHHHHHHHHHHHHHCChhHHHHH
Confidence            48999999987 567899999999999999999999874211         11334678999999999999999999999


Q ss_pred             ccc
Q 006420          174 DST  176 (646)
Q Consensus       174 Ds~  176 (646)
                      +..
T Consensus        71 ll~   73 (171)
T PRK05014         71 LLS   73 (171)
T ss_pred             HHH
Confidence            864

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=2.2e-12  Score=127.32  Aligned_cols=70  Identities=43%  Similarity=0.717  Sum_probs=62.9

Q ss_pred             CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420           91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR  170 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR  170 (646)
                      ....|||+||||++   +|+..+|+++||+++++||||++++..             ..+.+.|..|++||+||+|+.+|
T Consensus         3 ~~~~~~y~iLgv~~---~as~~eik~ayrkla~~~HPD~~~~~~-------------~~a~~~f~~i~~Ay~vLsd~~~r   66 (237)
T COG2214           3 SDLLDYYEILGVPP---NASLEEIKKAYRKLALKYHPDRNPGDP-------------KVAEEKFKEINEAYEILSDPERR   66 (237)
T ss_pred             hhhhhHHHHhCCCC---CCCHHHHHHHHHHHHHHhCCCCCCCch-------------hHHHHHHHHHHHHHHHhhCHHHH
Confidence            35679999999998   999999999999999999999999521             13689999999999999999999


Q ss_pred             hhhccc
Q 006420          171 RIYDST  176 (646)
Q Consensus       171 ~~YDs~  176 (646)
                      ..||..
T Consensus        67 ~~yd~~   72 (237)
T COG2214          67 AEYDKI   72 (237)
T ss_pred             HHhhhh
Confidence            999985

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.28  E-value=3.3e-12  Score=123.89  Aligned_cols=72  Identities=32%  Similarity=0.460  Sum_probs=60.7

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++ .|.++..+|+++||+++++||||+..+.  .         ....+...|..|++||+||+||.+|..|
T Consensus         2 ~~yf~llgl~~-~f~id~~~L~~aYr~lq~~~HPDk~~~~--~---------~k~~~~~~s~~in~AY~~L~dp~~Ra~Y   69 (166)
T PRK01356          2 QNYFQLLGLPQ-EYNIDLKILEKQYFAMQVKYHPDKAKTL--Q---------EKEQNLIIASELNNAYSTLKDALKRAEY   69 (166)
T ss_pred             CCHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCH--H---------HHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            58999999998 4668999999999999999999998631  0         1233456799999999999999999999


Q ss_pred             cccC
Q 006420          174 DSTD  177 (646)
Q Consensus       174 Ds~~  177 (646)
                      +...
T Consensus        70 lL~l   73 (166)
T PRK01356         70 MLLL   73 (166)
T ss_pred             HHHc
Confidence            8753

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.26  E-value=7.4e-12  Score=122.13  Aligned_cols=75  Identities=28%  Similarity=0.369  Sum_probs=64.2

Q ss_pred             ccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006420           92 NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR  171 (646)
Q Consensus        92 k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~  171 (646)
                      ..+|||++|||++ .|..+..+|+++||+++++||||+..+...         .....+...|..|++||.||+||.+|.
T Consensus         2 ~~~~~F~l~~l~~-~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~---------~e~~~a~~~s~~IN~AY~~L~~p~~Ra   71 (173)
T PRK00294          2 GTPCHFALFDLQP-SFRLDLDQLATRYRELAREVHPDRFADAPE---------REQRLALERSASLNEAYQTLKSPPRRA   71 (173)
T ss_pred             CCCChhhhcCcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCcH---------HHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence            4689999999997 788999999999999999999999875311         113456788999999999999999999


Q ss_pred             hhccc
Q 006420          172 IYDST  176 (646)
Q Consensus       172 ~YDs~  176 (646)
                      .|+..
T Consensus        72 ~YlL~   76 (173)
T PRK00294         72 RYLLA   76 (173)
T ss_pred             HHHHH
Confidence            99974

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.23  E-value=1.3e-11  Score=120.87  Aligned_cols=74  Identities=34%  Similarity=0.497  Sum_probs=62.2

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++ .|.++..+|+++||+++++||||+.++...         .....+.+.+..|++||.+|+||.+|..
T Consensus         5 ~~dyf~llglp~-~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~---------~e~~~a~~~s~~iN~AY~tL~~p~~Ra~   74 (176)
T PRK03578          5 KDDHFSLFGLPA-RFALDEAALDAAYRTVQAQVHPDRFAAAGD---------AEKRVAMQWATRANEAYQTLRDPLKRAR   74 (176)
T ss_pred             CCCHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCCH---------HHHHHHHHHHHHHHHHHHHhCChhhHHH
Confidence            379999999998 577899999999999999999999874211         1133456778999999999999999999


Q ss_pred             hccc
Q 006420          173 YDST  176 (646)
Q Consensus       173 YDs~  176 (646)
                      |+..
T Consensus        75 Yll~   78 (176)
T PRK03578         75 YLLH   78 (176)
T ss_pred             HHHH
Confidence            9864

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=2.4e-11  Score=130.81  Aligned_cols=68  Identities=40%  Similarity=0.609  Sum_probs=63.1

Q ss_pred             CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420           91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR  170 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR  170 (646)
                      .+..|+|.+|||+.   ++++++||+.||++|...|||||.               .+.+++.|+.++.||++|+|+.+|
T Consensus       232 ~~~~daYsvlGl~~---d~sd~~lKk~Yrk~A~LVhPDKn~---------------~~~A~Eafk~Lq~Afevig~~~kR  293 (490)
T KOG0720|consen  232 LNILDAYSALGLPS---DCSDADLKKNYRKKAMLVHPDKNM---------------IPRAEEAFKKLQVAFEVIGDSVKR  293 (490)
T ss_pred             hcCCCchhhcCCCC---CCCHHHHHHHHHhhceEeCCCccC---------------ChhHHHHHHHHHHHHHHhcchhhh
Confidence            34789999999998   999999999999999999999998               356789999999999999999999


Q ss_pred             hhhccc
Q 006420          171 RIYDST  176 (646)
Q Consensus       171 ~~YDs~  176 (646)
                      ..||..
T Consensus       294 ~eYd~e  299 (490)
T KOG0720|consen  294 KEYDLE  299 (490)
T ss_pred             hHHHHH
Confidence            999974

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.10  E-value=1.2e-10  Score=128.66  Aligned_cols=101  Identities=24%  Similarity=0.537  Sum_probs=90.7

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT  537 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~  537 (646)
                      ..+.||.||+..|+..|...-.|..-.|.+|-.||+ ||+..+.|.||-..|                            
T Consensus       304 ~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp-gr~~~qLI~R~~~~L----------------------------  354 (939)
T KOG0049|consen  304 SEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP-GRTRQQLITRFSHTL----------------------------  354 (939)
T ss_pred             HhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC-Ccchhhhhhhheecc----------------------------
Confidence            357899999999999999999999889999999998 799999999997543                            


Q ss_pred             chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420          538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA  617 (646)
Q Consensus       538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA  617 (646)
                                                                  .|+.+.++||.+||.+|..|+..|+   +..|-+|-
T Consensus       355 --------------------------------------------dPsikhg~wt~~ED~~L~~AV~~Yg---~kdw~k~R  387 (939)
T KOG0049|consen  355 --------------------------------------------DPSVKHGRWTDQEDVLLVCAVSRYG---AKDWAKVR  387 (939)
T ss_pred             --------------------------------------------CccccCCCCCCHHHHHHHHHHHHhC---ccchhhHH
Confidence                                                        3445667899999999999999998   56899999


Q ss_pred             hhCCCCCHHHHHHHHHH
Q 006420          618 TAVPGKTVIQCKKKFAS  634 (646)
Q Consensus       618 ~~Vpgrt~~~c~~Ryk~  634 (646)
                      ..|||||..||+.||--
T Consensus       388 ~~vPnRSdsQcR~RY~n  404 (939)
T KOG0049|consen  388 QAVPNRSDSQCRERYTN  404 (939)
T ss_pred             HhcCCccHHHHHHHHHH
Confidence            99999999999999954

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=5.8e-11  Score=119.13  Aligned_cols=70  Identities=31%  Similarity=0.541  Sum_probs=62.6

Q ss_pred             CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420           91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR  170 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR  170 (646)
                      +-..|+|+||||++   .++..+|.+|||+|+++||||++++               .+....|..|..||++|.|...|
T Consensus        30 CG~enCYdVLgV~R---ea~KseIakAYRqLARrhHPDr~r~---------------~e~k~~F~~iAtayeilkd~e~r   91 (329)
T KOG0722|consen   30 CGAENCYDVLGVAR---EANKSEIAKAYRQLARRHHPDRNRD---------------PESKKLFVKIATAYEILKDNETR   91 (329)
T ss_pred             ccchhHHHHhhhhh---hccHHHHHHHHHHHHHHhCCcccCC---------------chhhhhhhhhhcccccccchhhH
Confidence            34578999999999   9999999999999999999999995               23458999999999999999999


Q ss_pred             hhhcccCC
Q 006420          171 RIYDSTDE  178 (646)
Q Consensus       171 ~~YDs~~~  178 (646)
                      ..||-...
T Consensus        92 t~ydyald   99 (329)
T KOG0722|consen   92 TQYDYALD   99 (329)
T ss_pred             HhHHHHhc
Confidence            99998643

>PHA02624 large T antigen; Provisional

Probab=99.00  E-value=4.4e-10  Score=126.75  Aligned_cols=61  Identities=31%  Similarity=0.463  Sum_probs=55.8

Q ss_pred             cccccccccccccCCCC--CHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420           93 QQDHYALLGLSHLRYLA--TEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR  170 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~A--t~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR  170 (646)
                      -.++|+||||++   +|  +..+||+|||+++++||||+.++                  .+.|+.|+.||++|+|+.+|
T Consensus        10 ~~elyelLGL~~---~A~gs~~eIKkAYRkLAkkyHPDKgGd------------------eekfk~Ln~AYevL~d~~k~   68 (647)
T PHA02624         10 SKELMDLLGLPM---AAWGNLPLMRKAYLRKCKEYHPDKGGD------------------EEKMKRLNSLYKKLQEGVKS   68 (647)
T ss_pred             HHHHHHHcCCCC---CCCCCHHHHHHHHHHHHHHHCcCCCCc------------------HHHHHHHHHHHHHHhcHHHh
Confidence            358999999999   89  99999999999999999999642                  46899999999999999999


Q ss_pred             hhhc
Q 006420          171 RIYD  174 (646)
Q Consensus       171 ~~YD  174 (646)
                      ..|.
T Consensus        69 ~r~~   72 (647)
T PHA02624         69 ARQS   72 (647)
T ss_pred             hhcc
Confidence            9993

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.98  E-value=8.3e-10  Score=85.20  Aligned_cols=45  Identities=29%  Similarity=0.851  Sum_probs=40.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCC-CCCHHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVP-GKTVIQCKKKFASL  635 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vp-grt~~~c~~Ryk~l  635 (646)
                      .+||.+|+.+|.+|+..||.+   +|..||..|| |||..||+.||..|
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qc~~~~~~~   47 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMPGGRTAKQCRSRYQNL   47 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcCCCCCHHHHHHHHHhh
Confidence            379999999999999999854   7999999999 99999999999876

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=98.97  E-value=4.9e-10  Score=116.81  Aligned_cols=66  Identities=26%  Similarity=0.453  Sum_probs=55.2

Q ss_pred             CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcc
Q 006420           91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLID  166 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsD  166 (646)
                      ..-.|+|+||||++   ++|.++||++||+|+++||||+..+.+.++       ...+.++++|+.|+.||++|+.
T Consensus       197 ~~~~~ay~vLgv~~---~as~~eIk~aYr~L~~~~HPDk~~~~g~~~-------~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        197 PTLEDAYKVLGVSE---SDDDQEIKRAYRKLMSEHHPDKLVAKGLPP-------EMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CcHHhHHHHcCCCC---CCCHHHHHHHHHHHHHHhCcCCCCCCCCCh-------hhHHHHHHHHHHHHHHHHHHHH
Confidence            45579999999999   999999999999999999999986543332       1134578999999999999985

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=3.8e-10  Score=116.73  Aligned_cols=70  Identities=51%  Similarity=0.872  Sum_probs=61.6

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||.||||..   .|+..+|++||+++++++|||+++..             ...+...|+.|.+||++|+||.+|..
T Consensus         2 ~~d~~~~l~i~~---~as~~~i~ka~~~~a~~~hpdk~~~~-------------~~~~~~~~~~~~ea~~~ls~~~kr~~   65 (306)
T KOG0714|consen    2 GKDYYKILGIAR---SASEEDIKKAYRKLALKYHPDKNPSP-------------KEVAEAKFKEIAEAYEVLSDPKKRKI   65 (306)
T ss_pred             cccHHHHhCccc---cccHHHHHHHHHHHHHhhCCCCCCCc-------------hhhHHHHHhhhhccccccCCHHHhhh
Confidence            468999999997   89999999999999999999997742             12344589999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.+++
T Consensus        66 ~d~~~~   71 (306)
T KOG0714|consen   66 YDQYGE   71 (306)
T ss_pred             ccccCc
Confidence            999876

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=98.95  E-value=6.4e-10  Score=101.10  Aligned_cols=52  Identities=27%  Similarity=0.506  Sum_probs=46.7

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhc
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLI  165 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLs  165 (646)
                      ..++|+||||++   ++|.++|+++||+++++||||+..+                  ...|..|++||++|.
T Consensus        64 ~~eAy~ILGv~~---~As~~eIkkaYRrLa~~~HPDkgGs------------------~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISP---TASKERIREAHKQLMLRNHPDNGGS------------------TYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC------------------HHHHHHHHHHHHHHh
Confidence            479999999999   9999999999999999999998532                  457899999999995

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.89  E-value=1.7e-09  Score=116.02  Aligned_cols=77  Identities=32%  Similarity=0.584  Sum_probs=67.2

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      --|+|+||||+.   +++..+||++||+|+.++||||.+. .+.+        ...+-+++++.|++||+.|+|...|..
T Consensus        97 ~fDPyEILGI~~---~ts~rdik~~yr~Ls~KfhpdK~~~-mvn~--------~rse~Ee~y~~ItkAY~~lTd~k~ren  164 (610)
T COG5407          97 GFDPYEILGIDQ---DTSERDIKKRYRMLSMKFHPDKAPP-MVNE--------LRSEYEEKYKTITKAYGLLTDKKRREN  164 (610)
T ss_pred             CCChHHhhcccC---CCcHHHHHHHHHhheeecChhhcCC-CChh--------HHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            358999999999   9999999999999999999999986 2222        255678999999999999999999999


Q ss_pred             hcccCCCCC
Q 006420          173 YDSTDEFDD  181 (646)
Q Consensus       173 YDs~~~~~~  181 (646)
                      |=.+|..|.
T Consensus       165 yl~yGtPd~  173 (610)
T COG5407         165 YLNYGTPDS  173 (610)
T ss_pred             HHhcCCCCC
Confidence            999887554

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=8.7e-08  Score=93.52  Aligned_cols=72  Identities=24%  Similarity=0.413  Sum_probs=64.6

Q ss_pred             CCCCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcch
Q 006420           88 GEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDP  167 (646)
Q Consensus        88 ~~~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp  167 (646)
                      |+.+.+.|+|+||.|.+   ..+.++||+.||+|++..|||||++.             .+.+...|-.|.+||.+|-|+
T Consensus        47 gstyfnLNpfeVLqIdp---ev~~edikkryRklSilVHPDKN~Dd-------------~~rAqkAFdivkKA~k~l~n~  110 (250)
T KOG1150|consen   47 GSTYFNLNPFEVLQIDP---EVTDEDIKKRYRKLSILVHPDKNPDD-------------AERAQKAFDIVKKAYKLLEND  110 (250)
T ss_pred             CccccccChHHHHhcCC---CCCHHHHHHHHHhhheeecCCCCccc-------------HHHHHHHHHHHHHHHHHHhCH
Confidence            56789999999999999   99999999999999999999999963             456789999999999999999


Q ss_pred             hhhhhhcc
Q 006420          168 VKRRIYDS  175 (646)
Q Consensus       168 ~kR~~YDs  175 (646)
                      .-|...+.
T Consensus       111 ~~rkr~~~  118 (250)
T KOG1150|consen  111 KIRKRCLD  118 (250)
T ss_pred             HHHHHHHH
Confidence            87776554

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.84  E-value=4.3e-09  Score=102.84  Aligned_cols=72  Identities=19%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||++|||++ +|..+...|++.|+.+...+|||+..+.+.         ..+..+.+.-..|++||.||+||.+|..|
T Consensus         2 ~nyF~lf~lp~-~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~---------~eq~~a~~~ss~iN~AY~tLkdPl~RA~Y   71 (173)
T PRK01773          2 NNPFALFDLPV-DFQLDNALLSERYLALQKSLHPDNFANSSA---------QEQRLAMQKSAEVNDALQILKDPILRAEA   71 (173)
T ss_pred             CChHHhcCCCC-CCCCCHHHHHHHHHHHHHHhCcCcccCCCH---------HHHHHHHHHHHHHHHHHHHHCChHHHHHH
Confidence            68999999998 788999999999999999999999875321         12445677889999999999999999999


Q ss_pred             cc
Q 006420          174 DS  175 (646)
Q Consensus       174 Ds  175 (646)
                      =.
T Consensus        72 LL   73 (173)
T PRK01773         72 II   73 (173)
T ss_pred             HH
Confidence            54

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.82  E-value=8.8e-09  Score=79.48  Aligned_cols=46  Identities=28%  Similarity=0.579  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420          460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV  508 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~  508 (646)
                      ++||.+|+.+|..+|..||.+   +|..||..||++||..||..+|..+
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qc~~~~~~~   47 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMPGGRTAKQCRSRYQNL   47 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcCCCCCHHHHHHHHHhh
Confidence            589999999999999999665   7999999999779999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=98.72  E-value=3.6e-08  Score=79.34  Aligned_cols=43  Identities=37%  Similarity=0.662  Sum_probs=36.4

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          462 WSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       462 Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      ||.+|+.+|..+|..|  |.  .|..||.+|| .||..+|..||..+|
T Consensus         1 WT~eEd~~L~~~~~~~--g~--~W~~Ia~~l~-~Rt~~~~~~r~~~~l   43 (60)
T PF13921_consen    1 WTKEEDELLLELVKKY--GN--DWKKIAEHLG-NRTPKQCRNRWRNHL   43 (60)
T ss_dssp             S-HHHHHHHHHHHHHH--TS---HHHHHHHST-TS-HHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHH--Cc--CHHHHHHHHC-cCCHHHHHHHHHHHC
Confidence            9999999999999999  42  6999999996 699999999999854

...

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.66  E-value=2.9e-08  Score=95.70  Aligned_cols=62  Identities=24%  Similarity=0.347  Sum_probs=50.9

Q ss_pred             CCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhhcccC
Q 006420          107 YLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTD  177 (646)
Q Consensus       107 ~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~YDs~~  177 (646)
                      |..+..+|+++||+++++||||+.++.+.         ..+..+...|..|++||+||+||.+|..|+...
T Consensus         1 f~iD~~~L~~~yr~lq~~~HPD~~~~~~~---------~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l   62 (157)
T TIGR00714         1 YQLDTQALSLRYQDLQRQYHPDKFASGSA---------QEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL   62 (157)
T ss_pred             CCCCHHHHHHHHHHHHHHHCcCCCCCCCh---------hhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence            45677999999999999999999764221         113446789999999999999999999999864

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.66  E-value=5e-08  Score=73.77  Aligned_cols=46  Identities=28%  Similarity=0.793  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLK  636 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~  636 (646)
                      .+||++|+.+|..++..||.   .+|..||..+|+||..+|+.||..|.
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~---~~w~~Ia~~~~~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGK---NNWEKIAKELPGRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            47999999999999999973   47999999999999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.58  E-value=1.1e-07  Score=70.79  Aligned_cols=44  Identities=32%  Similarity=0.852  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          589 AWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       589 ~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      +||.+|+..|..++..||.   ..|..||..||+||..+|+.||..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            5999999999999999983   4699999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.58  E-value=1.1e-07  Score=103.53  Aligned_cols=103  Identities=23%  Similarity=0.516  Sum_probs=88.4

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT  537 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~  537 (646)
                      +.+.|+.-|++.|.-+|.+|  |++ .|..|+..++ ..|+++|..+|-+++                            
T Consensus         6 kggvwrntEdeilkaav~ky--g~n-qws~i~sll~-~kt~rqC~~rw~e~l----------------------------   53 (617)
T KOG0050|consen    6 KGGVWRNTEDEVLKAAVMKY--GKN-QWSRIASLLN-RKTARQCKARWEEWL----------------------------   53 (617)
T ss_pred             ecceecccHHHHHHHHHHHc--chH-HHHHHHHHHh-hcchhHHHHHHHHHh----------------------------
Confidence            56789999999999999999  665 5999999997 589999999999875                            


Q ss_pred             chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420          538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA  617 (646)
Q Consensus       538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA  617 (646)
                                                                  +|.+....||.+|+..|..+-+.+|.    -|.-||
T Consensus        54 --------------------------------------------dp~i~~tews~eederlLhlakl~p~----qwrtIa   85 (617)
T KOG0050|consen   54 --------------------------------------------DPAIKKTEWSREEDERLLHLAKLEPT----QWRTIA   85 (617)
T ss_pred             --------------------------------------------CHHHhhhhhhhhHHHHHHHHHHhcCC----ccchHH
Confidence                                                        22334457999999999999999974    699999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHHHhh
Q 006420          618 TAVPGKTVIQCKKKFASLKENFRS  641 (646)
Q Consensus       618 ~~Vpgrt~~~c~~Ryk~l~~~vk~  641 (646)
                      ..| |||..||..||..|+...-+
T Consensus        86 ~i~-gr~~~qc~eRy~~ll~~~~s  108 (617)
T KOG0050|consen   86 DIM-GRTSQQCLERYNNLLDVYVS  108 (617)
T ss_pred             HHh-hhhHHHHHHHHHHHHHHHHh
Confidence            776 79999999999999986544

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.48  E-value=4.1e-07  Score=101.25  Aligned_cols=98  Identities=24%  Similarity=0.492  Sum_probs=83.0

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT  537 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~  537 (646)
                      +.++||++|+.+|..||.+|  |. ..|-.|-+.|+ ||+.-||+.||.++|-+.                         
T Consensus       359 khg~wt~~ED~~L~~AV~~Y--g~-kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s-------------------------  409 (939)
T KOG0049|consen  359 KHGRWTDQEDVLLVCAVSRY--GA-KDWAKVRQAVP-NRSDSQCRERYTNVLNRS-------------------------  409 (939)
T ss_pred             cCCCCCCHHHHHHHHHHHHh--Cc-cchhhHHHhcC-CccHHHHHHHHHHHHHHh-------------------------
Confidence            57899999999999999999  33 46999999999 699999999999987221                         


Q ss_pred             chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420          538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA  617 (646)
Q Consensus       538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA  617 (646)
                                                                     .+.+-||-.|+..|..++.+||+|   .|-+||
T Consensus       410 -----------------------------------------------~K~~rW~l~edeqL~~~V~~YG~g---~WakcA  439 (939)
T KOG0049|consen  410 -----------------------------------------------AKVERWTLVEDEQLLYAVKVYGKG---NWAKCA  439 (939)
T ss_pred             -----------------------------------------------hccCceeecchHHHHHHHHHHccc---hHHHHH
Confidence                                                           012369999999999999999987   799999


Q ss_pred             hhCCCCCHHH---HHHHHHH
Q 006420          618 TAVPGKTVIQ---CKKKFAS  634 (646)
Q Consensus       618 ~~Vpgrt~~~---c~~Ryk~  634 (646)
                      ..+|.+|-+|   |+.|+..
T Consensus       440 ~~Lp~~t~~q~~rrR~R~~~  459 (939)
T KOG0049|consen  440 MLLPKKTSRQLRRRRLRLIA  459 (939)
T ss_pred             HHccccchhHHHHHHHHHHH
Confidence            9999999965   6666543

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=98.34  E-value=5.6e-07  Score=72.41  Aligned_cols=43  Identities=21%  Similarity=0.682  Sum_probs=37.0

Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHH-HH
Q 006420          590 WSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFAS-LK  636 (646)
Q Consensus       590 WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~-l~  636 (646)
                      ||.+|+.+|..++..|+    ..|..||..+|.||..+|+.||.. |.
T Consensus         1 WT~eEd~~L~~~~~~~g----~~W~~Ia~~l~~Rt~~~~~~r~~~~l~   44 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG----NDWKKIAEHLGNRTPKQCRNRWRNHLR   44 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT----S-HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHC----cCHHHHHHHHCcCCHHHHHHHHHHHCc
Confidence            99999999999999996    369999999977999999999998 64

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.31  E-value=1e-06  Score=98.38  Aligned_cols=104  Identities=19%  Similarity=0.392  Sum_probs=88.1

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT  537 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~  537 (646)
                      +.+.|+..|+..|..+|..|  |+.+ |.+||..++ .+++++|..+|.+++                            
T Consensus        19 k~gsw~~~EDe~l~~~vk~l--~~nn-ws~vas~~~-~~~~kq~~~rw~~~l----------------------------   66 (512)
T COG5147          19 KGGSWKRTEDEDLKALVKKL--GPNN-WSKVASLLI-SSTGKQSSNRWNNHL----------------------------   66 (512)
T ss_pred             cCCCCCCcchhHHHHHHhhc--cccc-HHHHHHHhc-ccccccccchhhhhh----------------------------
Confidence            45689999999999999999  5544 999999997 589999999997764                            


Q ss_pred             chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420          538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA  617 (646)
Q Consensus       538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA  617 (646)
                                                                  .|......||.+|+..|..+-..+|    .+|.-||
T Consensus        67 --------------------------------------------np~lk~~~~~~eed~~li~l~~~~~----~~wstia   98 (512)
T COG5147          67 --------------------------------------------NPQLKKKNWSEEEDEQLIDLDKELG----TQWSTIA   98 (512)
T ss_pred             --------------------------------------------chhcccccccHHHHHHHHHHHHhcC----chhhhhc
Confidence                                                        1222335799999999999999996    5799999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHHHhh
Q 006420          618 TAVPGKTVIQCKKKFASLKENFRS  641 (646)
Q Consensus       618 ~~Vpgrt~~~c~~Ryk~l~~~vk~  641 (646)
                      ..|||+|..+|.+||-.+.+..-+
T Consensus        99 ~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          99 DYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             cccCccchHHHHHHHHHHhhhhhc
Confidence            999999999999999887766543

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.21  E-value=3.1e-06  Score=63.81  Aligned_cols=45  Identities=33%  Similarity=0.571  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420          460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV  508 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~  508 (646)
                      .+||.+|+.+|..++..|+.   .+|..||..|+ +||..+|..+|..+
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~---~~w~~Ia~~~~-~rt~~~~~~~~~~~   46 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGK---NNWEKIAKELP-GRTAEQCRERWNNL   46 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            57999999999999999953   36999999998 69999999999875

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.14  E-value=5e-06  Score=61.74  Aligned_cols=44  Identities=34%  Similarity=0.674  Sum_probs=39.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420          461 PWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV  508 (646)
Q Consensus       461 ~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~  508 (646)
                      +||.+|+.+|.+++..|+.   .+|..||..|+ +||..+|..+|..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~-~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP-GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence            5999999999999999954   36999999998 49999999999764

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03212 Transcription repressor MYB5; Provisional

Probab=97.98  E-value=8.2e-06  Score=82.95  Aligned_cols=54  Identities=15%  Similarity=0.360  Sum_probs=44.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC-CCCCHHHHHHHHH-HHHHHH
Q 006420          583 SSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAV-PGKTVIQCKKKFA-SLKENF  639 (646)
Q Consensus       583 ~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V-pgrt~~~c~~Ryk-~l~~~v  639 (646)
                      +.....+||++||.+|..+++.|+.   .+|..||..+ ||||.+||+.||. +|.-.|
T Consensus        21 ~glKRg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I   76 (249)
T PLN03212         21 MGMKRGPWTVEEDEILVSFIKKEGE---GRWRSLPKRAGLLRCGKSCRLRWMNYLRPSV   76 (249)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCc---ccHHHHHHhhhcCCCcchHHHHHHHhhchhc
Confidence            3445678999999999999999984   5899999987 6999999999995 443333

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=1e-05  Score=94.26  Aligned_cols=64  Identities=28%  Similarity=0.375  Sum_probs=51.0

Q ss_pred             CCCCCCccccccccccccccCCCCC-HHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHh
Q 006420           86 KSGEGSNQQDHYALLGLSHLRYLAT-EDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVL  164 (646)
Q Consensus        86 ~~~~~~k~~d~Y~vLGl~~~r~~At-~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiL  164 (646)
                      ++|.....-+-|+||.|+..--..+ .+.||++|++|+.+||||||+.                 ..++|..+++|||.|
T Consensus      1273 kKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE-----------------GRemFe~VnKAYE~L 1335 (2235)
T KOG1789|consen 1273 KKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE-----------------GREMFERVNKAYELL 1335 (2235)
T ss_pred             cCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch-----------------HHHHHHHHHHHHHHH
Confidence            3455666678999999975322233 3789999999999999999983                 367999999999999


Q ss_pred             cc
Q 006420          165 ID  166 (646)
Q Consensus       165 sD  166 (646)
                      +.
T Consensus      1336 ~~ 1337 (2235)
T KOG1789|consen 1336 SS 1337 (2235)
T ss_pred             HH
Confidence            93

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=97.86  E-value=5.5e-05  Score=85.55  Aligned_cols=103  Identities=25%  Similarity=0.457  Sum_probs=82.1

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT  537 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~  537 (646)
                      ..+-||++|++.|.+.|..+  |+  .|..|+..||  |.+..|+.+|..+..+                          
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~--g~--~W~~Ig~~lg--r~P~~crd~wr~~~~~--------------------------  430 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEH--GN--DWKEIGKALG--RMPMDCRDRWRQYVKC--------------------------  430 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHh--cc--cHHHHHHHHc--cCcHHHHHHHHHhhcc--------------------------
Confidence            56789999999999999999  54  6999999994  9999999999985310                          


Q ss_pred             chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHH-------hC-----
Q 006420          538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALK-------TF-----  605 (646)
Q Consensus       538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~-------~~-----  605 (646)
                                                                  +......+||-+|...|.+++.       .|     
T Consensus       431 --------------------------------------------g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~  466 (607)
T KOG0051|consen  431 --------------------------------------------GSKRNRGAWSIEEEEKLLKTVNEMIREALQPQASNT  466 (607)
T ss_pred             --------------------------------------------ccccccCcchHHHHHHHHHHHHHHHHHhhccccccc
Confidence                                                        1112345799999999999984       22     


Q ss_pred             -------CCC---CChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 006420          606 -------PKE---TSQRWERVATAVPGKTVIQCKKKFASLK  636 (646)
Q Consensus       606 -------p~~---~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~  636 (646)
                             |.+   .+=-|.-|++.+.+|+.-||+.+|..|+
T Consensus       467 ~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~  507 (607)
T KOG0051|consen  467 DTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLT  507 (607)
T ss_pred             chhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHH
Confidence                   221   2347999999999999999999987765

>PLN03091 hypothetical protein; Provisional

Probab=97.54  E-value=8.3e-05  Score=81.05  Aligned_cols=45  Identities=13%  Similarity=0.437  Sum_probs=40.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC-CCCCHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAV-PGKTVIQCKKKFA  633 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V-pgrt~~~c~~Ryk  633 (646)
                      ....||++||.+|..++.+||.   ..|..||..+ ||||.+||+.||.
T Consensus        13 rKg~WTpEEDe~L~~~V~kyG~---~nWs~IAk~~g~gRT~KQCRERW~   58 (459)
T PLN03091         13 RKGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWI   58 (459)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCc---CCHHHHhhhhccCcCcchHhHHHH
Confidence            4468999999999999999985   4799999877 5999999999996

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.35  E-value=0.00018  Score=78.38  Aligned_cols=46  Identities=28%  Similarity=0.530  Sum_probs=42.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      ...+||..|--+|..||.+|+    +.|++||..|..||++||+-||-.|
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg----DdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG----DDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh----hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            446899999999999999995    7899999999999999999999654

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.00017  Score=72.14  Aligned_cols=58  Identities=24%  Similarity=0.513  Sum_probs=50.6

Q ss_pred             CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHH-Hhcc
Q 006420           91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYE-VLID  166 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYe-iLsD  166 (646)
                      .+-+.||.||||..   .|+.++++.+|..|++.+|||....               +.+...|..|.+||. ||+.
T Consensus        44 e~~~e~fril~v~e---~~~adevr~af~~lakq~hpdsgs~---------------~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   44 EKIMECFRILGVEE---GADADEVREAFHDLAKQVHPDSGSE---------------EADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHHHhcccc---cCchhHHHHHHHHHHHHcCCCCCCc---------------cccHHHHHHHHHHHHHHHHH
Confidence            35578999999999   9999999999999999999999873               334679999999998 7774

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=96.97  E-value=0.00066  Score=69.90  Aligned_cols=51  Identities=12%  Similarity=0.389  Sum_probs=45.3

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCC-CCCHHHHHHHH-HHHHHHHh
Q 006420          587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVP-GKTVIQCKKKF-ASLKENFR  640 (646)
Q Consensus       587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vp-grt~~~c~~Ry-k~l~~~vk  640 (646)
                      ..|||+|||..|..-++.|+.+   .|..|+...| ||+-++|+-|| .+|.=+|+
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~---~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ik   61 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKH---NGTALPKLAGLRRCGKSCRLRWTNYLRPDLK   61 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCC---CcchhhhhcCCCccchHHHHHhhcccCCCcc
Confidence            3689999999999999999965   8999999999 99999999998 56665555

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.84  E-value=0.0012  Score=71.75  Aligned_cols=43  Identities=28%  Similarity=0.570  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFA  633 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk  633 (646)
                      ..||.+|.-+|..|+.+|+-|   .|.-||..|+.||+.+|+.||-
T Consensus        73 ~~WtadEEilLLea~~t~G~G---NW~dIA~hIGtKtkeeck~hy~  115 (438)
T KOG0457|consen   73 PSWTADEEILLLEAAETYGFG---NWQDIADHIGTKTKEECKEHYL  115 (438)
T ss_pred             CCCChHHHHHHHHHHHHhCCC---cHHHHHHHHcccchHHHHHHHH
Confidence            479999999999999999987   7999999999999999999993

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.81  E-value=0.0011  Score=72.56  Aligned_cols=44  Identities=27%  Similarity=0.668  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHH
Q 006420          459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKT  507 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~  507 (646)
                      .++||..|+.+|..+|+.|  |  +.|++||.+|| .+|++|||-++=.
T Consensus       279 dk~WS~qE~~LLLEGIe~y--g--DdW~kVA~HVg-tKt~EqCIl~FL~  322 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMY--G--DDWDKVARHVG-TKTKEQCILHFLQ  322 (531)
T ss_pred             cccccHHHHHHHHHHHHHh--h--hhHHHHHHHhC-CCCHHHHHHHHHc
Confidence            4689999999999999999  4  35999999999 5999999999854

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.0021  Score=57.37  Aligned_cols=53  Identities=23%  Similarity=0.385  Sum_probs=44.0

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcch
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDP  167 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp  167 (646)
                      ..--.||||++   .++.+.||.|||++-+..|||+....-                  .-..|++|+++|...
T Consensus        56 ~EA~lIL~v~~---s~~k~KikeaHrriM~~NHPD~GGSPY------------------lAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   56 REAALILGVTP---SLDKDKIKEAHRRIMLANHPDRGGSPY------------------LASKINEAKDLLEGT  108 (112)
T ss_pred             HHHHHHhCCCc---cccHHHHHHHHHHHHHcCCCcCCCCHH------------------HHHHHHHHHHHHhcc
Confidence            34567999998   999999999999999999999988532                  224689999999754

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.61  E-value=0.0025  Score=71.80  Aligned_cols=46  Identities=28%  Similarity=0.557  Sum_probs=42.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      ....||..|.-+|..||.+|+    +.|.+||..|.+||..||+-||-.|
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~----ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYG----DDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhc----ccHHHHHhccCCCCHHHHHHHHHhc
Confidence            446899999999999999995    7799999999999999999999765

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=96.57  E-value=0.0072  Score=48.58  Aligned_cols=47  Identities=13%  Similarity=0.273  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcch---hHHHhHhcCCC-CHHHHHHHHHHH
Q 006420          459 EKPWSKEEIELLRKGMQKYPKGTSRRW---EVISEYIGTGR-SVEEILKATKTV  508 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW---~~IA~~~~~~R-t~ke~~~~~k~~  508 (646)
                      .-.||+||..+|..||+.|+.|   .|   ..|++.|+..+ |..+|..++..+
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g---~~a~pk~I~~~~~~~~lT~~qV~SH~QKy   53 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGP---DWATPKRILELMVVDGLTRDQVASHLQKY   53 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC---cccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3579999999999999999554   49   99999997656 999999887654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=96.43  E-value=0.0069  Score=48.68  Aligned_cols=44  Identities=16%  Similarity=0.303  Sum_probs=37.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhH---HHHHhhC-CCC-CHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRW---ERVATAV-PGK-TVIQCKKKFAS  634 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW---~~IA~~V-pgr-t~~~c~~Ryk~  634 (646)
                      -.||++|+..|..||..||.+   .|   ..|+.++ +.+ |..||+.|++.
T Consensus         4 ~~WT~eeh~~Fl~ai~~~G~g---~~a~pk~I~~~~~~~~lT~~qV~SH~QK   52 (57)
T TIGR01557         4 VVWTEDLHDRFLQAVQKLGGP---DWATPKRILELMVVDGLTRDQVASHLQK   52 (57)
T ss_pred             CCCCHHHHHHHHHHHHHhCCC---cccchHHHHHHcCCCCCCHHHHHHHHHH
Confidence            469999999999999999864   49   9998754 344 99999999864

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=96.24  E-value=0.018  Score=65.67  Aligned_cols=113  Identities=25%  Similarity=0.395  Sum_probs=79.1

Q ss_pred             cCCCCCHHHHHHHHHHHH------hC-------------CCC---CCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCc
Q 006420          458 KEKPWSKEEIELLRKGMQ------KY-------------PKG---TSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDG  515 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~------~~-------------p~g---t~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~  515 (646)
                      ..+.||.+|-+.|.++|+      ..             |.+   .+-.|..|++.+|| |+--+|+.+|..++. .+  
T Consensus       435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~T-R~~~qCr~Kw~kl~~-~~--  510 (607)
T KOG0051|consen  435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGT-RSRIQCRYKWYKLTT-SP--  510 (607)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcC-CCcchHHHHHHHHHh-hH--
Confidence            567899999999999996      11             333   33479999998886 999999999987641 10  


Q ss_pred             hhhhHHHHhhcCCcCccCCCCcchhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCC-CCCCCCCCCHHH
Q 006420          516 AKAFDSFLEKRKPAQSIASPLTTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVS-SSSDQDAWSAVQ  594 (646)
Q Consensus       516 ~ka~~~f~~~~k~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~WT~eE  594 (646)
                        +|.                                                           +.. .......|..|+
T Consensus       511 --s~n-----------------------------------------------------------~~~~~~~~~~v~l~Er  529 (607)
T KOG0051|consen  511 --SFN-----------------------------------------------------------KRQESKGSDMVWLLER  529 (607)
T ss_pred             --Hhh-----------------------------------------------------------cccccccchhHHHHHH
Confidence              000                                                           000 000123577776


Q ss_pred             HHHHHHHHHhCCCCCChhHHHHHhhCCCCC-HHHHHHHHHHHHHHHh
Q 006420          595 ERALVQALKTFPKETSQRWERVATAVPGKT-VIQCKKKFASLKENFR  640 (646)
Q Consensus       595 ~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt-~~~c~~Ryk~l~~~vk  640 (646)
                      ...|...     ...+-.|+.|+...||.+ ..+|+.+|-.|+..|.
T Consensus       530 L~dl~~~-----e~~~IDW~~l~~~~~g~~~~~e~r~q~~~lk~~I~  571 (607)
T KOG0051|consen  530 LSDLDLT-----EESPIDWKSLAEYAPGESTGEELRLQFERLKKKIP  571 (607)
T ss_pred             HHhcccc-----cCCccCHHHHHHhCCCCCcHHHHHHHHHhHhhccC
Confidence            5554433     123568999999999998 9999999999988765

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.16  E-value=0.0078  Score=65.73  Aligned_cols=51  Identities=24%  Similarity=0.450  Sum_probs=44.0

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcC
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQK  512 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk  512 (646)
                      ....||.+|-=+|.+|+.+|.-|   +|.-||.+|| .||..+|..+|-.+.+..
T Consensus        71 ~~~~WtadEEilLLea~~t~G~G---NW~dIA~hIG-tKtkeeck~hy~k~fv~s  121 (438)
T KOG0457|consen   71 LDPSWTADEEILLLEAAETYGFG---NWQDIADHIG-TKTKEECKEHYLKHFVNS  121 (438)
T ss_pred             CCCCCChHHHHHHHHHHHHhCCC---cHHHHHHHHc-ccchHHHHHHHHHHHhcC
Confidence            45679999999999999999666   6999999999 499999999998875544

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=95.81  E-value=0.0084  Score=57.18  Aligned_cols=74  Identities=20%  Similarity=0.462  Sum_probs=56.2

Q ss_pred             ccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006420           92 NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR  171 (646)
Q Consensus        92 k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~  171 (646)
                      ...+||.++|... .+...++-+.--|--...++|||+.......         ..+.+.+.-..|++||.+|.||-.|.
T Consensus         6 ~~~~ff~~Fg~e~-~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~---------~~d~a~eqSa~lnkAY~TLk~pL~RA   75 (168)
T KOG3192|consen    6 SPSRFFDIFGMEL-SFKIDPDKLKEKYTDISKKLHPDRPGLSFAG---------DTDQASEQSAELNKAYDTLKDPLARA   75 (168)
T ss_pred             hHHHHHHHhcccc-CCCCCcchhhHHHHHHHHhhCcccccccccc---------cchhHHHHHHHHHHHHHHHHhHHHHH
Confidence            3468999998864 3455666666679999999999996642211         12356778889999999999999999


Q ss_pred             hhcc
Q 006420          172 IYDS  175 (646)
Q Consensus       172 ~YDs  175 (646)
                      .|=.
T Consensus        76 ~Yil   79 (168)
T KOG3192|consen   76 RYLL   79 (168)
T ss_pred             HHHH
Confidence            9955

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=95.35  E-value=0.025  Score=65.05  Aligned_cols=50  Identities=28%  Similarity=0.486  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENF  639 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~v  639 (646)
                      +.+.||+.|.++|..||-+|-+    .+..|+.+|+|||++||..=|..-+.++
T Consensus       618 gSd~WTp~E~~lF~kA~y~~~K----DF~~v~km~~~KtVaqCVeyYYtWKK~~  667 (907)
T KOG4167|consen  618 GSDKWTPLERKLFNKALYTYSK----DFIFVQKMVKSKTVAQCVEYYYTWKKIM  667 (907)
T ss_pred             CcccccHHHHHHHHHHHHHhcc----cHHHHHHHhccccHHHHHHHHHHHHHhc
Confidence            3467999999999999999965    4999999999999999998776555444

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=95.24  E-value=0.018  Score=64.77  Aligned_cols=51  Identities=33%  Similarity=0.418  Sum_probs=39.3

Q ss_pred             CCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhc
Q 006420          108 LATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLI  165 (646)
Q Consensus       108 ~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLs  165 (646)
                      ..|..+||++|||.+|..||||.+..+..       ...+-.+.+.|-.+++|+....
T Consensus       399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas-------~~qK~Iaekvfd~l~eawn~f~  449 (453)
T KOG0431|consen  399 LVTPAQVKKAYRKAVLCVHPDKLQQKGAS-------LEQKYIAEKVFDALSEAWNKFN  449 (453)
T ss_pred             ccCHHHHHHHHHhhhheeCcccccCCccc-------HHHHHHHHHHHHHHHHHHHhhh
Confidence            57899999999999999999998864321       1224567888888888887543

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.16  E-value=0.03  Score=48.22  Aligned_cols=50  Identities=24%  Similarity=0.446  Sum_probs=34.5

Q ss_pred             CCCCHHHHHHHHHHHHh------CC--CCCC--cchhHHHhHh---cCCCCHHHHHHHHHHHh
Q 006420          460 KPWSKEEIELLRKGMQK------YP--KGTS--RRWEVISEYI---GTGRSVEEILKATKTVL  509 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~------~p--~gt~--~RW~~IA~~~---~~~Rt~ke~~~~~k~~l  509 (646)
                      ..||.+|..+|+.++..      |.  ....  .-|..||..|   |-.||+.||..+|+++.
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            36999999999998866      32  1222  2699999998   66799999999999963

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=95.15  E-value=0.025  Score=63.98  Aligned_cols=46  Identities=22%  Similarity=0.532  Sum_probs=40.6

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV  508 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~  508 (646)
                      ....||..|+-+|..+|++|  |  +.|.+||..|| +||..||+.++-.+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y--~--ddW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMY--G--DDWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHh--c--ccHHHHHhccC-CCCHHHHHHHHHhc
Confidence            46789999999999999999  4  35999999999 59999999988553

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.13  E-value=0.29  Score=57.07  Aligned_cols=11  Identities=27%  Similarity=0.652  Sum_probs=7.5

Q ss_pred             HHHHHHHHhCC
Q 006420          596 RALVQALKTFP  606 (646)
Q Consensus       596 ~~Le~al~~~p  606 (646)
                      -...++++.||
T Consensus       811 ve~lq~iA~y~  821 (1118)
T KOG1029|consen  811 VEILQAIALYP  821 (1118)
T ss_pred             hhhhhHHhhcc
Confidence            45567777777

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.10  E-value=0.022  Score=56.01  Aligned_cols=61  Identities=34%  Similarity=0.520  Sum_probs=50.8

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVL  164 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiL  164 (646)
                      .+.|.+||+..   .+....|+++|+++...+|||+..+.+++..       --..+.+.++.|+.||+.+
T Consensus       113 ~~~l~~l~~~~---~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e-------~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEI---KADQDAIKKAYRKLLSEQHPDKAAAKGLKLE-------FIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCch---hhhHHHHHHHHHHHHHhcCHHHHHHhcCCHH-------HHHHHHHHHHHHHHHHHhc
Confidence            78999999999   9999999999999999999999887654421       1345688899999999753

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.06  E-value=0.037  Score=47.67  Aligned_cols=55  Identities=24%  Similarity=0.589  Sum_probs=39.8

Q ss_pred             CCCHHHHHHHHHHHHh------CC--CC-CC-hhHHHHHhhC----CCCCHHHHHHHHHHHHHHHhhhh
Q 006420          589 AWSAVQERALVQALKT------FP--KE-TS-QRWERVATAV----PGKTVIQCKKKFASLKENFRSKK  643 (646)
Q Consensus       589 ~WT~eE~~~Le~al~~------~p--~~-~~-~rW~~IA~~V----pgrt~~~c~~Ryk~l~~~vk~kK  643 (646)
                      .||.+|..+|..++..      |.  .. .. .-|..||..+    ..||..||..+|+.|....+.-+
T Consensus         3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k   71 (90)
T PF13837_consen    3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIK   71 (90)
T ss_dssp             SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999888      21  12 22 3799999765    26999999999999999988654

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=94.62  E-value=0.03  Score=62.21  Aligned_cols=48  Identities=25%  Similarity=0.564  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLK  636 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~  636 (646)
                      ....|+..|+..|-.|+.+|++   +-|.+|+..++-+|+.||..||.+..
T Consensus         6 kggvwrntEdeilkaav~kyg~---nqws~i~sll~~kt~rqC~~rw~e~l   53 (617)
T KOG0050|consen    6 KGGVWRNTEDEVLKAAVMKYGK---NQWSRIASLLNRKTARQCKARWEEWL   53 (617)
T ss_pred             ecceecccHHHHHHHHHHHcch---HHHHHHHHHHhhcchhHHHHHHHHHh
Confidence            3468999999999999999985   58999999999999999999996543

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.53  E-value=0.041  Score=57.87  Aligned_cols=45  Identities=22%  Similarity=0.483  Sum_probs=41.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFA  633 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk  633 (646)
                      -...|+.+|.-+|..++.+.+-|   .|+-||..|+.|++.+|+.||-
T Consensus        62 ~~e~WgadEEllli~~~~TlGlG---NW~dIadyiGsr~kee~k~Hyl  106 (432)
T COG5114          62 GEEGWGADEELLLIECLDTLGLG---NWEDIADYIGSRAKEEIKSHYL  106 (432)
T ss_pred             cCCCcCchHHHHHHHHHHhcCCC---cHHHHHHHHhhhhhHHHHHHHH
Confidence            44579999999999999999977   7999999999999999999983

>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]

Probab=94.50  E-value=0.72  Score=53.12  Aligned_cols=18  Identities=22%  Similarity=0.268  Sum_probs=12.1

Q ss_pred             CHHHHHHHHHHHHhCCCC
Q 006420          591 SAVQERALVQALKTFPKE  608 (646)
Q Consensus       591 T~eE~~~Le~al~~~p~~  608 (646)
                      |.-..+.++..-++||.-
T Consensus       716 S~~~~~~~~t~~~k~~~~  733 (811)
T KOG4364|consen  716 SQGINRVVETLQQKFPDV  733 (811)
T ss_pred             ccHHHHHHHhhhhhcCCC
Confidence            445667777777777753

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=93.20  E-value=1.2  Score=54.77  Aligned_cols=9  Identities=0%  Similarity=0.135  Sum_probs=3.6

Q ss_pred             CHHHHHHHH
Q 006420          463 SKEEIELLR  471 (646)
Q Consensus       463 t~eE~~~L~  471 (646)
                      ...++.-|.
T Consensus       695 ~~~~~~~~~  703 (1021)
T PTZ00266        695 DRNDMHGYM  703 (1021)
T ss_pred             chhhhhHHh
Confidence            334444333

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=93.06  E-value=0.055  Score=53.13  Aligned_cols=72  Identities=29%  Similarity=0.455  Sum_probs=54.1

Q ss_pred             cccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhhc
Q 006420           95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYD  174 (646)
Q Consensus        95 d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~YD  174 (646)
                      ||+..+|+.. .|....+.+...|+.+...+|||.....+-.         .....-..+..++.||.+|.||.+|..|=
T Consensus         2 ~~~~~~~~~~-~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~---------~~~~~l~~~~~~~~a~~tLk~~l~ra~~~   71 (174)
T COG1076           2 DGFVLFGLPR-AFQIDLDALKLQYRELQRAYHPDRFGKASEA---------EQRKALQQSAEVNPAYQTLKDPLLRAEYL   71 (174)
T ss_pred             CcccccccHH-HHHHHHhHhhhhHHHHHHhhCcccccccchH---------HHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            4566667765 2344556788999999999999998753211         13335678999999999999999999996


Q ss_pred             cc
Q 006420          175 ST  176 (646)
Q Consensus       175 s~  176 (646)
                      ..
T Consensus        72 la   73 (174)
T COG1076          72 LA   73 (174)
T ss_pred             HH
Confidence            54

>PTZ00121 MAEBL; Provisional

Probab=93.04  E-value=2.7  Score=52.46  Aligned_cols=17  Identities=12%  Similarity=-0.083  Sum_probs=10.3

Q ss_pred             hhhHHhcccccccCCCc
Q 006420          228 FYNFWYSFKSWREFPHA  244 (646)
Q Consensus       228 FY~fw~~F~SwR~f~~~  244 (646)
                      |-+.=.++.|...|+|.
T Consensus      1066 ~~~~~~~~~s~~~~~~~ 1082 (2084)
T PTZ00121       1066 VGQDEGLKPSYKDFDFD 1082 (2084)
T ss_pred             cCcccccccccccccch
Confidence            34444566677777775

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=93.02  E-value=0.56  Score=57.86  Aligned_cols=148  Identities=12%  Similarity=0.243  Sum_probs=87.9

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcC-CcCcc----
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRK-PAQSI----  532 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k-~~~~i----  532 (646)
                      +-..||.-|-..+++|+.+|  | -+.-+.||..|+ |+|..+|..-++-. .+.-.....|+..+..-- +...|    
T Consensus       823 gf~~w~~~~f~~f~~~~~~~--g-r~~~~~i~~~~~-~k~~~ev~~y~~~f-~~~~~~~~~~~~~~~~ie~~e~~~~~~~  897 (1033)
T PLN03142        823 GFSTWSRRDFNAFIRACEKY--G-RNDIKSIASEME-GKTEEEVERYAKVF-WERYKELNDYDRIIKNIERGEARISRKD  897 (1033)
T ss_pred             CcCcccHHHHHHHHHHHHHh--C-HhHHHHHHHHhc-CCCHHHHHHHHHHH-HHhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence            45679999999999999999  4 346999999997 69999997433321 111111112222222100 00000    


Q ss_pred             --CCCCcchhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCC
Q 006420          533 --ASPLTTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETS  610 (646)
Q Consensus       533 --~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~  610 (646)
                        ...+....+....+-.              ..            ..+.  +......+|.+||..|.-++-+||-+  
T Consensus       898 ~~~~~~~~k~~~~~~p~~--------------~l------------~~~~--~~~~~~~~~~~~d~~~~~~~~~~g~~--  947 (1033)
T PLN03142        898 EIMKAIGKKLDRYKNPWL--------------EL------------KIQY--GQNKGKLYNEECDRFMLCMVHKLGYG--  947 (1033)
T ss_pred             HHHHHHHHHHHHccCcHH--------------Hc------------eeec--CCCCCCcCCHHHHHHHHHHHHHhccc--
Confidence              0000000000000000              00            0000  01233579999999999999999854  


Q ss_pred             hhHHHHHhhC------------CCCCHHHHHHHHHHHHHHHhh
Q 006420          611 QRWERVATAV------------PGKTVIQCKKKFASLKENFRS  641 (646)
Q Consensus       611 ~rW~~IA~~V------------pgrt~~~c~~Ryk~l~~~vk~  641 (646)
                       +|+.|-.+|            -.||+.++.+|...|..+|..
T Consensus       948 -~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~~~  989 (1033)
T PLN03142        948 -NWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLIEK  989 (1033)
T ss_pred             -hHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHHHH
Confidence             599996554            289999999999999998864

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.90  E-value=1.7  Score=51.04  Aligned_cols=18  Identities=17%  Similarity=0.158  Sum_probs=9.5

Q ss_pred             CCCHHHHHHHHHHhhhhc
Q 006420          108 LATEDQIRKSYRETALKY  125 (646)
Q Consensus       108 ~At~~eIKkAYrklalk~  125 (646)
                      .|-+.--|.-|+++--.+
T Consensus       187 WAVp~~~klKY~QlFNa~  204 (1118)
T KOG1029|consen  187 WAVPQHNKLKYRQLFNAL  204 (1118)
T ss_pred             ccccchhhhHHHHHhhhc
Confidence            344444455577765444

>KOG2891 consensus Surface glycoprotein [General function prediction only]

Probab=92.07  E-value=7.1  Score=40.89  Aligned_cols=23  Identities=43%  Similarity=0.541  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 006420          316 KKLQEEEAARAAEEERRRKVEEE  338 (646)
Q Consensus       316 ~r~~~ee~~~~~eeer~~ke~ee  338 (646)
                      +++.++..+++..+++.+++.|+
T Consensus       344 kkr~eeaeerqraeekeq~eaee  366 (445)
T KOG2891|consen  344 KKREEEAEERQRAEEKEQKEAEE  366 (445)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHH
Confidence            33333333344444444444444

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=91.58  E-value=0.39  Score=40.42  Aligned_cols=55  Identities=24%  Similarity=0.398  Sum_probs=46.1

Q ss_pred             CCCHHHHHHHHHHHHhCCC---C----------CChhHHHHHhhC---C--CCCHHHHHHHHHHHHHHHhhhh
Q 006420          589 AWSAVQERALVQALKTFPK---E----------TSQRWERVATAV---P--GKTVIQCKKKFASLKENFRSKK  643 (646)
Q Consensus       589 ~WT~eE~~~Le~al~~~p~---~----------~~~rW~~IA~~V---p--grt~~~c~~Ryk~l~~~vk~kK  643 (646)
                      .||.+|...|+..+..||.   +          -..-|+.|+..|   +  .||..+|+..|.-|+..+|.+-
T Consensus         4 ~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk~~   76 (78)
T PF13873_consen    4 NFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKKKL   76 (78)
T ss_pred             CCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            6999999999999999964   1          146799999654   2  5999999999999999998763

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=91.42  E-value=0.21  Score=52.63  Aligned_cols=47  Identities=34%  Similarity=0.572  Sum_probs=41.0

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV  508 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~  508 (646)
                      ....|+.+|--+|++++.+..-|   .|+-||.||| .|+..+|..+|-.+
T Consensus        62 ~~e~WgadEEllli~~~~TlGlG---NW~dIadyiG-sr~kee~k~HylK~  108 (432)
T COG5114          62 GEEGWGADEELLLIECLDTLGLG---NWEDIADYIG-SRAKEEIKSHYLKM  108 (432)
T ss_pred             cCCCcCchHHHHHHHHHHhcCCC---cHHHHHHHHh-hhhhHHHHHHHHHH
Confidence            45679999999999999999555   6999999999 79999999888554

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=91.17  E-value=11  Score=39.49  Aligned_cols=19  Identities=26%  Similarity=0.242  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 006420          344 VALQQKKVKEKEKKLLRKE  362 (646)
Q Consensus       344 ~~~~~KK~ke~~Kk~lkKe  362 (646)
                      ..+..+++++..|++++-.
T Consensus       289 aKE~~kka~k~~Kk~ikna  307 (379)
T COG5269         289 AKEVMKKALKMEKKAIKNA  307 (379)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            3455566666666666654

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=91.08  E-value=0.96  Score=53.08  Aligned_cols=17  Identities=12%  Similarity=0.266  Sum_probs=9.4

Q ss_pred             CCHHHHHHHHHHHHHHH
Q 006420          623 KTVIQCKKKFASLKENF  639 (646)
Q Consensus       623 rt~~~c~~Ryk~l~~~v  639 (646)
                      .+.++-..||..++-.|
T Consensus       626 ~v~~EF~~R~~~ii~ef  642 (1064)
T KOG1144|consen  626 DVQNEFKERLNNIIVEF  642 (1064)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44555666666555443

>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]

Probab=91.04  E-value=5.3  Score=46.34  Aligned_cols=24  Identities=29%  Similarity=0.293  Sum_probs=12.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHH
Q 006420          258 KRWMERQNAKLTEKARKEEYARIR  281 (646)
Q Consensus       258 rR~~Ek~N~k~r~k~kke~~~rir  281 (646)
                      ++.+.|+-++.+..+.|+...|-|
T Consensus       245 ~~l~~KQ~rk~meEreK~R~erEr  268 (811)
T KOG4364|consen  245 EKLLLKQLRKNMEEREKERKERER  268 (811)
T ss_pred             hhHHHHHHHHhHHHHHHHHHHHHH
Confidence            344555555555555555444444

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=90.75  E-value=0.42  Score=40.25  Aligned_cols=50  Identities=28%  Similarity=0.370  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHhCCC---C--C--------CcchhHHHhHh----cCCCCHHHHHHHHHHHh
Q 006420          460 KPWSKEEIELLRKGMQKYPK---G--T--------SRRWEVISEYI----GTGRSVEEILKATKTVL  509 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~---g--t--------~~RW~~IA~~~----~~~Rt~ke~~~~~k~~l  509 (646)
                      ..||.+|..+|+..|..||.   |  +        ..-|+.|+..|    |+.||+.+|..+|.++.
T Consensus         3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            56999999999999998742   1  1        13799999998    33799999999999863

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=88.70  E-value=1.1  Score=41.52  Aligned_cols=55  Identities=15%  Similarity=0.358  Sum_probs=46.2

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC------------CCCCHHHHHHHHHHHHHHHhh
Q 006420          587 QDAWSAVQERALVQALKTFPKETSQRWERVATAV------------PGKTVIQCKKKFASLKENFRS  641 (646)
Q Consensus       587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V------------pgrt~~~c~~Ryk~l~~~vk~  641 (646)
                      ...||.+||..|...+..||-+.++.|++|-..|            -.||+.++.+|-..|...|..
T Consensus        49 ~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~K  115 (118)
T PF09111_consen   49 KKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIEK  115 (118)
T ss_dssp             -SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHHC
T ss_pred             CCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHHH
Confidence            4579999999999999999998889999997764            379999999999999988753

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=88.55  E-value=3.1  Score=46.56  Aligned_cols=10  Identities=50%  Similarity=1.102  Sum_probs=4.7

Q ss_pred             ccCCCccccc
Q 006420          239 REFPHADEFD  248 (646)
Q Consensus       239 R~f~~~de~~  248 (646)
                      +.+.+.++..
T Consensus       275 ~~~P~~~~~~  284 (429)
T PRK00247        275 RKYPLTDEFK  284 (429)
T ss_pred             HhcCCCcchH
Confidence            3455555443

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=88.43  E-value=3.8  Score=41.22  Aligned_cols=119  Identities=13%  Similarity=0.163  Sum_probs=74.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc--CCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCcch
Q 006420          462 WSKEEIELLRKGMQKYPKGTSRRWEVISEYIG--TGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTTR  539 (646)
Q Consensus       462 Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~--~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~~r  539 (646)
                      |++.++=+|+.||..    |. --+.|+..|.  ...|.++|..||..+|.....+.-|-                  .+
T Consensus         2 W~~~DDl~Li~av~~----~~-~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~------------------~~   58 (199)
T PF13325_consen    2 WKPEDDLLLINAVEQ----TN-DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAV------------------AA   58 (199)
T ss_pred             CCchhhHHHHHHHHH----hc-CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHH------------------HH
Confidence            999999999999973    32 2566666552  24699999999999874221111000                  00


Q ss_pred             hhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHh-
Q 006420          540 EEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVAT-  618 (646)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~-  618 (646)
                      +...  .+.                               .....-...+||.+|..+|......... +.+.+.+|=. 
T Consensus        59 m~~l--~p~-------------------------------~~~~iq~kalfS~~EE~lL~~v~s~~~p-~le~Fq~LL~~  104 (199)
T PF13325_consen   59 MRNL--HPE-------------------------------LIAAIQSKALFSKEEEQLLGTVASSSQP-SLETFQELLDK  104 (199)
T ss_pred             HHhC--Ccc-------------------------------hhhcccccCCCCHHHHHHHHhhhhccCC-cHHHHHHHHHh
Confidence            0000  000                               0011123358999999999997665533 2478888842 


Q ss_pred             ----hCCCCCHHHHHHHHHHHHH
Q 006420          619 ----AVPGKTVIQCKKKFASLKE  637 (646)
Q Consensus       619 ----~Vpgrt~~~c~~Ryk~l~~  637 (646)
                          --++||.++-..+|..|+.
T Consensus       105 n~~vFh~sRTak~L~~HW~lmkq  127 (199)
T PF13325_consen  105 NRSVFHPSRTAKSLQDHWRLMKQ  127 (199)
T ss_pred             ChhhhccccCHHHHHHHHHHHHH
Confidence                2379999999999987653

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=87.88  E-value=0.62  Score=50.28  Aligned_cols=54  Identities=19%  Similarity=0.403  Sum_probs=50.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCC----CChhHHHHHhhCCC-CCHHHHHHHHHHHHHHHhhh
Q 006420          589 AWSAVQERALVQALKTFPKE----TSQRWERVATAVPG-KTVIQCKKKFASLKENFRSK  642 (646)
Q Consensus       589 ~WT~eE~~~Le~al~~~p~~----~~~rW~~IA~~Vpg-rt~~~c~~Ryk~l~~~vk~k  642 (646)
                      -|+.+..+.|+.||..|...    ++++|++++.+||| .+..+.+.+|..++.+|...
T Consensus        33 ~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~   91 (335)
T KOG0724|consen   33 LWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIR   91 (335)
T ss_pred             hhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhh
Confidence            59999999999999999875    78999999999999 99999999999999998754

>PTZ00121 MAEBL; Provisional

Probab=87.57  E-value=14  Score=46.56  Aligned_cols=9  Identities=0%  Similarity=-0.042  Sum_probs=3.9

Q ss_pred             HHHHHHHHH
Q 006420          153 HFKAVQEAY  161 (646)
Q Consensus       153 ~F~~I~~AY  161 (646)
                      ...|+.--|
T Consensus       946 f~eC~e~lF  954 (2084)
T PTZ00121        946 FGGCLEYLF  954 (2084)
T ss_pred             HHHHHHHHH
Confidence            344444444

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=85.76  E-value=1  Score=48.60  Aligned_cols=43  Identities=19%  Similarity=0.346  Sum_probs=38.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHH-HhhCCCCCHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERV-ATAVPGKTVIQCKKKFAS  634 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~I-A~~Vpgrt~~~c~~Ryk~  634 (646)
                      ..||.+|-+.||.+|+.|+++    +..| +..|+.||.-+|+.=|..
T Consensus       278 ~~wsEeEcr~FEegl~~yGKD----F~lIr~nkvrtRsvgElVeyYYl  321 (445)
T KOG4329|consen  278 SGWSEEECRNFEEGLELYGKD----FHLIRANKVRTRSVGELVEYYYL  321 (445)
T ss_pred             ccCCHHHHHHHHHHHHHhccc----HHHHHhcccccchHHHHHHHHHH
Confidence            479999999999999999875    8889 579999999999976643

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=85.69  E-value=12  Score=44.20  Aligned_cols=12  Identities=25%  Similarity=0.692  Sum_probs=5.7

Q ss_pred             ccccccccccccc
Q 006420           92 NQQDHYALLGLSH  104 (646)
Q Consensus        92 k~~d~Y~vLGl~~  104 (646)
                      .+.|||. |++++
T Consensus       551 ~~k~HfR-L~~PR  562 (1259)
T KOG0163|consen  551 SNKNHFR-LDLPR  562 (1259)
T ss_pred             hhhccee-ecCCc
Confidence            3455553 34444

>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

Probab=84.99  E-value=38  Score=36.40  Aligned_cols=7  Identities=29%  Similarity=0.596  Sum_probs=3.1

Q ss_pred             HHHHHHH
Q 006420          277 YARIRTL  283 (646)
Q Consensus       277 ~~rir~L  283 (646)
                      ..||++|
T Consensus       100 qErlkQl  106 (387)
T COG3064         100 QERLKQL  106 (387)
T ss_pred             HHHHHHH
Confidence            3444444

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional

Probab=84.81  E-value=42  Score=37.34  Aligned_cols=12  Identities=25%  Similarity=0.426  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHH
Q 006420          273 RKEEYARIRTLV  284 (646)
Q Consensus       273 kke~~~rir~LV  284 (646)
                      +..+..||+.|-
T Consensus        96 ~~~eq~rlk~le  107 (387)
T PRK09510         96 QAAEQERLKQLE  107 (387)
T ss_pred             HHHHHHHHHHHH
Confidence            334456676663

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=84.40  E-value=2.4  Score=36.78  Aligned_cols=52  Identities=29%  Similarity=0.549  Sum_probs=40.4

Q ss_pred             CCHHHHHHHHHHHHhC------CCC---CChhHHHHHhhC---CC--CCHHHHHHHHHHHHHHHhh
Q 006420          590 WSAVQERALVQALKTF------PKE---TSQRWERVATAV---PG--KTVIQCKKKFASLKENFRS  641 (646)
Q Consensus       590 WT~eE~~~Le~al~~~------p~~---~~~rW~~IA~~V---pg--rt~~~c~~Ryk~l~~~vk~  641 (646)
                      ||+++...|...|...      |.+   .+..|..|+..+   +|  .|..||++||+.|+...+.
T Consensus         2 Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~   67 (96)
T PF12776_consen    2 WTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRI   67 (96)
T ss_pred             CChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHH
Confidence            9999999999888654      211   257899998654   44  5789999999999988763

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=83.78  E-value=21  Score=42.38  Aligned_cols=6  Identities=17%  Similarity=0.651  Sum_probs=2.7

Q ss_pred             CCCCHH
Q 006420          460 KPWSKE  465 (646)
Q Consensus       460 ~~Wt~e  465 (646)
                      +.|.-.
T Consensus      1068 ~~wkya 1073 (1259)
T KOG0163|consen 1068 SKWKYA 1073 (1259)
T ss_pred             ccccHH
Confidence            345543

>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]

Probab=83.68  E-value=15  Score=41.92  Aligned_cols=7  Identities=29%  Similarity=0.463  Sum_probs=3.0

Q ss_pred             HHHHHHH
Q 006420          398 LRNLCDK  404 (646)
Q Consensus       398 L~~l~~~  404 (646)
                      |..+|..
T Consensus       331 lk~~~~~  337 (591)
T KOG2412|consen  331 LKNYNQS  337 (591)
T ss_pred             HHHHHHH
Confidence            4444443

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional

Probab=82.71  E-value=56  Score=36.32  Aligned_cols=7  Identities=43%  Similarity=0.344  Sum_probs=3.0

Q ss_pred             HHhhhhH
Q 006420          225 VDNFYNF  231 (646)
Q Consensus       225 v~~FY~f  231 (646)
                      |..-|+.
T Consensus        60 v~~q~~~   66 (387)
T PRK09510         60 VVEQYNR   66 (387)
T ss_pred             HHHHHHH
Confidence            4444444

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=80.43  E-value=3.1  Score=38.47  Aligned_cols=52  Identities=29%  Similarity=0.425  Sum_probs=42.2

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcC-----------CCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGT-----------GRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~-----------~Rt~ke~~~~~k~~l  509 (646)
                      +.+.||.+||.-|.-.|.+|+-++++.|+.|-..|-.           +||+.++..|...++
T Consensus        48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi  110 (118)
T PF09111_consen   48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLI  110 (118)
T ss_dssp             S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHH
T ss_pred             CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHH
Confidence            5678999999999999999988888999999997721           699999999987764

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=80.21  E-value=3.1  Score=45.18  Aligned_cols=44  Identities=20%  Similarity=0.344  Sum_probs=40.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFA  633 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk  633 (646)
                      ...+||..|...|-.||..+|.    .+..||...|.|.-+|++..|.
T Consensus       364 ~~~~Ws~~e~ekFYKALs~wGt----dF~LIs~lfP~R~RkqIKaKfi  407 (507)
T COG5118         364 GALRWSKKEIEKFYKALSIWGT----DFSLISSLFPNRERKQIKAKFI  407 (507)
T ss_pred             CCCcccHHHHHHHHHHHHHhcc----hHHHHHHhcCchhHHHHHHHHH
Confidence            4468999999999999999975    5999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	646
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-07
2m2e_A	73	Solution Nmr Structure Of The Sant Domain Of Human		2e-07
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-07
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-07
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		3e-07
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		2e-06
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		1e-05
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		1e-05
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		2e-05
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		2e-05
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		2e-05
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		4e-05
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		7e-05
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		5e-04

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 17/82 (20%)
Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIET 152
           +QD+Y +LG+S     A E +IRK+Y+  A+KYHPD+                     E 
Sbjct: 2   KQDYYEILGVSKT---AEEREIRKAYKRLAMKYHPDRNQGDKEA--------------EA 44
Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
            FK ++EAYEVL D  KR  YD
Sbjct: 45  KFKEIKEAYEVLTDSQKRAAYD 66

>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2, Northeast Structural Genomics Consortium Target Hr8254a Length = 73

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 39/56 (69%)
Query: 590 WSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
           W+  +++ L QALKT+P  T +RW+++A AVPG+T   C K++  L E  ++KK+A
Sbjct: 6   WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMVKAKKAA 61

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 17/82 (20%)
Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIET 152
           +QD+Y +LG+S     A E +IRK+Y+  A+KYHPD+                     E 
Sbjct: 2   KQDYYEILGVSKT---AEEREIRKAYKRLAMKYHPDRNQGDKEA--------------EA 44
Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
            FK ++EAYEVL D  KR  YD
Sbjct: 45  KFKEIKEAYEVLTDSQKRAAYD 66

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 17/82 (20%)
Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIET 152
           +QD+Y +LG+S     A E +IRK+Y+  A+KYHPD+                     E 
Sbjct: 2   KQDYYEILGVSKT---AEEREIRKAYKRLAMKYHPDRNQGDKEA--------------EA 44
Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
            FK ++EAYEVL D  KR  YD
Sbjct: 45  KFKEIKEAYEVLTDSQKRAAYD 66

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 18/85 (21%)
Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
           +D+Y  LGL+     A++++I+++YR  AL+YHPDK                     E  
Sbjct: 3   KDYYQTLGLARG---ASDEEIKRAYRRQALRYHPDKNKEPGA---------------EEK 44
Query: 154 FKAVQEAYEVLIDPVKRRIYDSTDE 178
           FK + EAY+VL DP KR I+D   E
Sbjct: 45  FKEIAEAYDVLSDPRKREIFDRYGE 69

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 39/78 (50%), Gaps = 20/78 (25%)
Query: 97  YALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHFKA 156
           Y LLG+S     A E +++K YR+ ALKYHPDK                        FK 
Sbjct: 11  YDLLGVSPS---ANEQELKKGYRKAALKYHPDKPTGDTEK-----------------FKE 50
Query: 157 VQEAYEVLIDPVKRRIYD 174
           + EA+E+L DP KR IYD
Sbjct: 51  ISEAFEILNDPQKREIYD 68

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 18/80 (22%)
Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHF 154
           D+Y +LG+S     A+++ ++K+YR  ALK+HPDK                        F
Sbjct: 8   DYYEILGVSRG---ASDEDLKKAYRRLALKFHPDKNHAPGATEA---------------F 49
Query: 155 KAVQEAYEVLIDPVKRRIYD 174
           KA+  AY VL +P KR+ YD
Sbjct: 50  KAIGTAYAVLSNPEKRKQYD 69

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 17/78 (21%)
Query: 97  YALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHFKA 156
           Y +LGL      AT D I+KSYR+ ALKYHPDK                        FK 
Sbjct: 20  YHVLGLDKN---ATSDDIKKSYRKLALKYHPDKNPDNPEAADK--------------FKE 62
Query: 157 VQEAYEVLIDPVKRRIYD 174
           +  A+ +L D  KR IYD
Sbjct: 63  INNAHAILTDATKRNIYD 80

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 16/80 (20%)
Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHF 154
           D+Y +L +      A+ + I+K+YR+ ALK+HPDK                     E  F
Sbjct: 10  DYYEVLDVPRQ---ASSEAIKKAYRKLALKWHPDKNPENKEEA-------------ERRF 53
Query: 155 KAVQEAYEVLIDPVKRRIYD 174
           K V EAYEVL D  KR IYD
Sbjct: 54  KQVAEAYEVLSDAKKRDIYD 73

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 16/80 (20%)
Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHF 154
           ++Y +LG+   +  A+ + I+K+YR+ AL++HPDK                     E  F
Sbjct: 10  NYYEVLGV---QASASPEDIKKAYRKLALRWHPDKNPDNKEEA-------------EKKF 53
Query: 155 KAVQEAYEVLIDPVKRRIYD 174
           K V EAYEVL D  KR +YD
Sbjct: 54  KLVSEAYEVLSDSKKRSLYD 73

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 20/83 (24%)
Query: 96  HYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHFK 155
           +Y +LG+   +  AT+++++K+YR+ ALKYHPDK                        FK
Sbjct: 8   YYDVLGV---KPNATQEELKKAYRKLALKYHPDKNPNEGEK-----------------FK 47
Query: 156 AVQEAYEVLIDPVKRRIYDSTDE 178
            + +AYEVL D  KR +YD   E
Sbjct: 48  QISQAYEVLSDAKKRELYDKGGE 70

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 20/83 (24%)
Query: 96  HYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHFK 155
           +Y +LG+   +  A++++++K+YR+ ALK+HPDK                        FK
Sbjct: 10  YYDVLGV---KPDASDNELKKAYRKMALKFHPDKNPDGAE-----------------QFK 49
Query: 156 AVQEAYEVLIDPVKRRIYDSTDE 178
            + +AYEVL D  KR+IYD   E
Sbjct: 50  QISQAYEVLSDEKKRQIYDQGGE 72

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 109 ATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHFKAVQEAYEVLIDPV 168
           A+ D I+K+YR  AL++HPDK                     E  FK V EAYEVL D  
Sbjct: 14  ASADDIKKAYRRKALQWHPDKNPDNKEFA-------------EKKFKEVAEAYEVLSDKH 60
Query: 169 KRRIYD 174
           KR IYD
Sbjct: 61  KREIYD 66

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 18/80 (22%)
Query: 96  HYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHFK 155
           +Y +LG+      A+E QI+K++ + A+KYHPDK                     E  F+
Sbjct: 9   YYDILGVPKS---ASERQIKKAFHKLAMKYHPDKNKSPDA---------------EAKFR 50
Query: 156 AVQEAYEVLIDPVKRRIYDS 175
            + EAYE L D  +R+ YD+
Sbjct: 51  EIAEAYETLSDANRRKEYDT 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	646
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-18
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-16
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-16
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	7e-16
2cjj_A	93	Radialis; plant development, DNA-binding protein,	8e-16
2cjj_A	93	Radialis; plant development, DNA-binding protein,	2e-05
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	9e-16
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	9e-16
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	1e-15
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	4e-15
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	4e-15
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	1e-14
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	1e-14
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	2e-14
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	2e-14
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	2e-14
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	3e-14
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	2e-05
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	3e-14
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	3e-14
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	3e-14
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	4e-14
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	2e-07
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	7e-14
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	1e-13
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-13
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-13
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	2e-13
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	4e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-12
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	5e-12
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	2e-11
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	7e-11
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-10
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	3e-08
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	7e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-04
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	7e-07
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	1e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	8e-05
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	6e-06
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	9e-06
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	5e-04
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	1e-05
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	2e-05
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	7e-05
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	9e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	8e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	8e-05
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	1e-04
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	2e-04
2guz_A	71	Mitochondrial import inner membrane translocase su	7e-04

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 82.2 bits (203), Expect = 1e-18
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 11/89 (12%)

Query: 87  SGEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAK 146
           + E   ++D Y++LG       A    +++ Y++  L YHPDKQ+  + A   E      
Sbjct: 3   AVEQMPKKDWYSILGADPS---ANISDLKQKYQKLILMYHPDKQSTDVPAGTVEEC---- 55

Query: 147 KDEIETHFKAVQEAYEVLIDPVKRRIYDS 175
                  F  + +A+++L +   +R YD 
Sbjct: 56  ----VQKFIEIDQAWKILGNEETKREYDL 80

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 16/80 (20%)

Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHF 154
            +Y +L +      A+ D I+K+YR  AL++HPDK                 K+  E  F
Sbjct: 3   SYYEILDVPRS---ASADDIKKAYRRKALQWHPDKN-------------PDNKEFAEKKF 46

Query: 155 KAVQEAYEVLIDPVKRRIYD 174
           K V EAYEVL D  KR IYD
Sbjct: 47  KEVAEAYEVLSDKHKREIYD 66

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 76.8 bits (189), Expect = 3e-16
 Identities = 37/160 (23%), Positives = 59/160 (36%), Gaps = 24/160 (15%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           Q+ Y+LLG+S     A+  +IR+++++ ALK HPDK               A        
Sbjct: 2   QNFYSLLGVSKT---ASSREIRQAFKKLALKLHPDK---------NPNNPNA-----HGD 44

Query: 154 FKAVQEAYEVLIDPVKRRIYDS--TDEFDDAIPADCAPQDFYKVFGPAFTRNGRWSANQL 211
           F  +  AYEVL D   R+ YD       +D          +Y+     +  +      + 
Sbjct: 45  FLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLER 104

Query: 212 VPSLGDENTPLKEVDNFYNFW----YSFKS-WREFPHADE 246
                  N+      NFY+      +     WREF    +
Sbjct: 105 REFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD 144

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 72.3 bits (178), Expect = 7e-16
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 16/88 (18%)

Query: 87  SGEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAK 146
           S   S   ++Y +LG+      A+ + I+K+YR+ AL++HPDK                 
Sbjct: 2   SSGSSGMANYYEVLGVQAS---ASPEDIKKAYRKLALRWHPDKN-------------PDN 45

Query: 147 KDEIETHFKAVQEAYEVLIDPVKRRIYD 174
           K+E E  FK V EAYEVL D  KR +YD
Sbjct: 46  KEEAEKKFKLVSEAYEVLSDSKKRSLYD 73

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 72.2 bits (177), Expect = 8e-16
 Identities = 22/64 (34%), Positives = 34/64 (53%)

Query: 582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRS 641
           S+      WSA + +A  +AL  + K+T  RW  VA AV G+T  + KK +  L E+ + 
Sbjct: 3   STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 642 KKSA 645
            +S 
Sbjct: 63  IESG 66

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 452 LKSFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILK 503
           + S     +PWS +E +   + +  Y K T  RW  ++  +  GR+ EE+ K
Sbjct: 1   MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKK 51

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 72.1 bits (177), Expect = 9e-16
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 11/95 (11%)

Query: 80  SSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEET 139
           SS     + E + ++D Y++LG       A    +++ Y++  L YHPDKQ+A + A   
Sbjct: 2   SSGSSGMALEQTLKKDWYSILGADPS---ANMSDLKQKYQKLILLYHPDKQSADVPAGTM 58

Query: 140 EAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYD 174
           E             F  + +A+++L +   ++ YD
Sbjct: 59  EEC--------MQKFIEIDQAWKILGNEETKKKYD 85

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 71.5 bits (176), Expect = 9e-16
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 16/88 (18%)

Query: 87  SGEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAK 146
           S   S   D+Y +L +      A+ + I+K+YR+ ALK+HPDK                 
Sbjct: 2   SSGSSGMVDYYEVLDVPRQ---ASSEAIKKAYRKLALKWHPDKN-------------PEN 45

Query: 147 KDEIETHFKAVQEAYEVLIDPVKRRIYD 174
           K+E E  FK V EAYEVL D  KR IYD
Sbjct: 46  KEEAERRFKQVAEAYEVLSDAKKRDIYD 73

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 18/81 (22%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           +D+Y  LGL+     A++++I+++YR  AL+YHPDK                K+   E  
Sbjct: 3   KDYYQTLGLARG---ASDEEIKRAYRRQALRYHPDKN---------------KEPGAEEK 44

Query: 154 FKAVQEAYEVLIDPVKRRIYD 174
           FK + EAY+VL DP KR I+D
Sbjct: 45  FKEIAEAYDVLSDPRKREIFD 65

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 72.6 bits (178), Expect = 4e-15
 Identities = 19/113 (16%), Positives = 30/113 (26%), Gaps = 21/113 (18%)

Query: 91  SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEI 150
                   LLGL           +RK+Y +   ++HPDK                     
Sbjct: 8   EESLQLMDLLGLER-SAWGNIPLMRKAYLKKCKEFHPDKGGD------------------ 48

Query: 151 ETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQDFYKVFGPAFTRN 203
           E   K +   Y+ + D VK         F D    +             + + 
Sbjct: 49  EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWD--ATEVFASSLNPGVDAIYCKQ 99

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 69.6 bits (171), Expect = 4e-15
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 18/87 (20%)

Query: 88  GEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKK 147
           G   +  D+Y +LG+S     A+++ ++K+YR  ALK+HPDK                  
Sbjct: 1   GSSGSSGDYYEILGVSRG---ASDEDLKKAYRRLALKFHPDKN---------------HA 42

Query: 148 DEIETHFKAVQEAYEVLIDPVKRRIYD 174
                 FKA+  AY VL +P KR+ YD
Sbjct: 43  PGATEAFKAIGTAYAVLSNPEKRKQYD 69

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 18/81 (22%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           +D+YA+LG+           I+ +YR  A KYHPD                 K+++ E  
Sbjct: 28  KDYYAILGVQPT---DDLKTIKTAYRRLARKYHPDVS---------------KENDAEAK 69

Query: 154 FKAVQEAYEVLIDPVKRRIYD 174
           FK + EA+EVL D  +R  YD
Sbjct: 70  FKDLAEAWEVLKDEQRRAEYD 90

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 19/112 (16%)

Query: 91  SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEI 150
            + +D+Y LLG   L   ++ +QI   ++  AL+ HPDK      A E            
Sbjct: 17  EDTEDYYTLLGCDEL---SSVEQILAEFKVRALECHPDKHPENPKAVE------------ 61

Query: 151 ETHFKAVQEAYEVLIDPVKRRIYDS--TDEFDDAIPADCAPQDFYKVFGPAF 200
              F+ +Q+A E+L +   R  YD     +         A  D  K  GP+ 
Sbjct: 62  --TFQKLQKAKEILTNEESRARYDHWRRSQMSMPFQQWEALNDSVKTSGPSS 111

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 17/82 (20%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
            +  Y +LGL      AT D I+KSYR+ ALKYHPDK      A +              
Sbjct: 16  GESLYHVLGLDKN---ATSDDIKKSYRKLALKYHPDKNPDNPEAAD-------------- 58

Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
            FK +  A+ +L D  KR IYD
Sbjct: 59  KFKEINNAHAILTDATKRNIYD 80

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 17/82 (20%)

Query: 93  QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIET 152
           +QD+Y +LG+S     A E +IRK+Y+  A+KYHPD+        + EA         E 
Sbjct: 2   KQDYYEILGVSKT---AEEREIRKAYKRLAMKYHPDRNQ-----GDKEA---------EA 44

Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
            FK ++EAYEVL D  KR  YD
Sbjct: 45  KFKEIKEAYEVLTDSQKRAAYD 66

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 17/95 (17%)

Query: 80  SSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEET 139
           S     +     ++   Y LLG+      AT+ QI+ +Y      YHPD+ +    A E 
Sbjct: 3   SGSSGSQGDCSYSRTALYDLLGVPST---ATQAQIKAAYYRQCFLYHPDRNSGSAEAAE- 58

Query: 140 EAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYD 174
                         F  + +AY VL     RR YD
Sbjct: 59  -------------RFTRISQAYVVLGSATLRRKYD 80

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 67.2 bits (164), Expect = 3e-14
 Identities = 18/68 (26%), Positives = 29/68 (42%)

Query: 571 KPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKK 630
           K  D   ++  S+      W   +  A   AL    K+T  RW++VA  V G+T  + KK
Sbjct: 4   KDDDDKGSHMASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKK 63

Query: 631 KFASLKEN 638
            +     +
Sbjct: 64  HYELEHHH 71

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 447 NGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILK 503
           +  + + S     +PW   E       +    K T  RW+ +++Y+  GR+ EE+ K
Sbjct: 8   DKGSHMASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKK 63

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 18/87 (20%)

Query: 88  GEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKK 147
           G   +   +Y +LG+      A+E QI+K++ + A+KYHPDK                K 
Sbjct: 1   GSSGSSGSYYDILGVPKS---ASERQIKKAFHKLAMKYHPDKN---------------KS 42

Query: 148 DEIETHFKAVQEAYEVLIDPVKRRIYD 174
            + E  F+ + EAYE L D  +R+ YD
Sbjct: 43  PDAEAKFREIAEAYETLSDANRRKEYD 69

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 68.2 bits (167), Expect = 3e-14
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 13/81 (16%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           ++ Y +L ++  R    + ++ K+YR  A K+HPD+              + +K   E  
Sbjct: 15  ENCYDVLEVN--REEFDKQKLAKAYRALARKHHPDRVK-----------NKEEKLLAEER 61

Query: 154 FKAVQEAYEVLIDPVKRRIYD 174
           F+ +  AYE L D   +  YD
Sbjct: 62  FRVIATAYETLKDDEAKTNYD 82

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 67.4 bits (165), Expect = 3e-14
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 18/84 (21%)

Query: 91  SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEI 150
           +   D Y +LG+S     A++  I+K+Y++ A ++HPDK                K    
Sbjct: 14  ALDFDPYRVLGVSRT---ASQADIKKAYKKLAREWHPDKN---------------KDPGA 55

Query: 151 ETHFKAVQEAYEVLIDPVKRRIYD 174
           E  F  + +AYE+L +  KR  YD
Sbjct: 56  EDRFIQISKAYEILSNEEKRTNYD 79

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 66.6 bits (162), Expect = 4e-14
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 453 KSFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV 508
            S       W++E++  L + M K+P GT  RWE I+  +  GRSV ++    K +
Sbjct: 2   SSGSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQL 55

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 48.1 bits (114), Expect = 2e-07
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 580 GVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENF 639
           G S SS    W+      L +++  FP  T  RWE++A  + G++V     K   LK++ 
Sbjct: 1   GSSGSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59

Query: 640 RSKKSA 645
                 
Sbjct: 60  TCSPGM 65

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 66.6 bits (163), Expect = 7e-14
 Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 20/83 (24%)

Query: 92  NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIE 151
            +   Y LLG+S     A E +++K YR+ ALKYHPDK        E             
Sbjct: 6   KETKLYDLLGVSPS---ANEQELKKGYRKAALKYHPDKPTG---DTE------------- 46

Query: 152 THFKAVQEAYEVLIDPVKRRIYD 174
             FK + EA+E+L DP KR IYD
Sbjct: 47  -KFKEISEAFEILNDPQKREIYD 68

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 20/130 (15%)

Query: 91  SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEI 150
                   LLGL           +RK+Y +   ++HPDK                     
Sbjct: 5   EESLQLMDLLGLER-SAWGNIPLMRKAYLKKCKEFHPDKGGD------------------ 45

Query: 151 ETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQDFYKVFGPAFTRNGRWSANQ 210
           E   K +   Y+ + D VK         F DA        D ++ +  AF     +  ++
Sbjct: 46  EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFC-SE 104

Query: 211 LVPSLGDENT 220
            +PS  DE T
Sbjct: 105 EMPSSDDEAT 114

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 20/80 (25%)

Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHF 154
            +Y +LG+      A++++++K+YR+ ALK+HPDK        E               F
Sbjct: 9   GYYDVLGVKPD---ASDNELKKAYRKMALKFHPDKNPD---GAE--------------QF 48

Query: 155 KAVQEAYEVLIDPVKRRIYD 174
           K + +AYEVL D  KR+IYD
Sbjct: 49  KQISQAYEVLSDEKKRQIYD 68

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 17/87 (19%)

Query: 88  GEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKK 147
           G   +  D+Y +LG+      A++ +I+K+Y + A KYHPD       A+E         
Sbjct: 1   GSSGSSGDYYQILGVPRN---ASQKEIKKAYYQLAKKYHPDTNKDDPKAKE--------- 48

Query: 148 DEIETHFKAVQEAYEVLIDPVKRRIYD 174
                 F  + EAYEVL D VKR+ YD
Sbjct: 49  -----KFSQLAEAYEVLSDEVKRKQYD 70

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 64.5 bits (157), Expect = 2e-13
 Identities = 16/70 (22%), Positives = 33/70 (47%)

Query: 572 PADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKK 631
                +     + S ++ W+  Q++ L  AL+ +P+ +S  W+++A  VP K+   C  +
Sbjct: 3   SGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIAR 62

Query: 632 FASLKENFRS 641
           +  L     S
Sbjct: 63  YKLLVSGPSS 72

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 52.6 bits (126), Expect = 4e-09
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 442 GSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEI 501
           GS  ++GS   +     E+PW++ + +LL   +Q+YP+G+S  W+ I+  +   +S E+ 
Sbjct: 1   GSSGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDC 59

Query: 502 LK 503
           + 
Sbjct: 60  IA 61

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 14/85 (16%)

Query: 91  SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEI 150
           S ++D+Y +LG+      A + +I K+YR+ AL++HPD               + +K + 
Sbjct: 379 SQKRDYYKILGVKRN---AKKQEIIKAYRKLALQWHPDN-----------FQNEEEKKKA 424

Query: 151 ETHFKAVQEAYEVLIDPVKRRIYDS 175
           E  F  +  A EVL DP  R+ +D 
Sbjct: 425 EKKFIDIAAAKEVLSDPEMRKKFDD 449

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 61.3 bits (149), Expect = 5e-12
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 18/83 (21%)

Query: 92  NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIE 151
           N +D + +LG+      A+ D++ K+YR+ A+  HPDK                     E
Sbjct: 25  NSKDSWDMLGVKPG---ASRDEVNKAYRKLAVLLHPDKC---------------VAPGSE 66

Query: 152 THFKAVQEAYEVLIDPVKRRIYD 174
             FKAV  A   L+  +K     
Sbjct: 67  DAFKAVVNARTALLKNIKSGPSS 89

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 60.4 bits (146), Expect = 7e-11
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHF 154
           D++ L GL   RY      +   +++   +YHPDK A+           QA++       
Sbjct: 2   DYFTLFGLPA-RYQLDTQALSLRFQDLQRQYHPDKFAS---------GSQAEQLAAVQQS 51

Query: 155 KAVQEAYEVLIDPVKRRIYD 174
             + +A++ L  P+ R  Y 
Sbjct: 52  ATINQAWQTLRHPLMRAEYL 71

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 63.6 bits (154), Expect = 1e-10
 Identities = 31/145 (21%), Positives = 49/145 (33%), Gaps = 19/145 (13%)

Query: 74  PSYESYSSKGKKKSGEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAAL 133
            S+  +        G   + Q+ Y+LLG+S     A+  +IR+++++ ALK HPD     
Sbjct: 3   SSHHHHHHSSGHIEGR--HDQNFYSLLGVSKT---ASSREIRQAFKKLALKLHPD----- 52

Query: 134 LFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQDFY 193
                    K          F  +  AYEVL D   R+ YD   E           + + 
Sbjct: 53  ---------KNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWS 103

Query: 194 KVFGPAFTRNGRWSANQLVPSLGDE 218
                    +       L     D 
Sbjct: 104 YYRYDFGIYDDDPEIITLERREFDA 128

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 19/81 (23%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           ++  +++  +       E + +K  R   LK+HPDK                  D     
Sbjct: 16  KEVTSVVEQAWK---LPESERKKIIRRLYLKWHPDKN-------------PENHDIANEV 59

Query: 154 FKAVQEAYEVLIDPVKRRIYD 174
           FK +Q     L    K+   D
Sbjct: 60  FKHLQNEINRLE---KQAFLD 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 9e-10
 Identities = 64/448 (14%), Positives = 119/448 (26%), Gaps = 155/448 (34%)

Query: 274 KEEYARIRTLVDNAYKRDPRILKRKEAEKAEK----QKKKEAKYLAKKLQEEEAARAAEE 329
           K+  +    L           L  K+ E  +K      +   K+L   ++ E   R    
Sbjct: 58  KDAVSGTLRLFW--------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE--QRQPSM 107

Query: 330 ERRRKVEEEKRVAEV--ALQQKKVKEKEKKL-LRKERTRLR----------------TLS 370
             R  +E+  R+        +  V   +  L LR+    LR                 ++
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 371 ASVTSQHLLDVSTEDVESLCMSF---------------DMEQLRNLCDKMEKSEGLEQAK 415
             V         +  V+   M F                +E L+ L  ++          
Sbjct: 168 LDV-------CLSYKVQC-KMDFKIFWLNLKNCNSPETVLEMLQKLLYQI---------- 209

Query: 416 LIRNAVGHADESEAKKQDEKKNVQQN-GSVETNGSTLLKSFEKKEKP---------WSKE 465
                    D +   + D   N++    S++     LLKS   K             + +
Sbjct: 210 ---------DPNWTSRSDHSSNIKLRIHSIQAELRRLLKS---KPYENCLLVLLNVQNAK 257

Query: 466 EIE--------LLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAK 517
                      LL          T+R  +V         +   +   + T  L   +   
Sbjct: 258 AWNAFNLSCKILL----------TTRFKQVTDFLSAATTTHISLDHHSMT--LTPDEVKS 305

Query: 518 AFDSFLEKRK---PAQSIA-SPLTTREEVVGASTPQVVQNSGARTDSSEE---------- 563
               +L+ R    P + +  +P      ++  S    +++  A  D+ +           
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRL--SIIAES----IRDGLATWDNWKHVNCDKLTTII 359

Query: 564 SSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKE---TSQR----WERV 616
            SS    +PA+                     R +   L  FP      +      W  V
Sbjct: 360 ESSLNVLEPAEY--------------------RKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 617 ATAVPGKTVIQCKKKFASLKENFRSKKS 644
             +     V +  K     K+   S  S
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTIS 427

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 64/507 (12%), Positives = 155/507 (30%), Gaps = 133/507 (26%)

Query: 89  EGSNQQDHYALLGLSHLR--YLA------TEDQIRKSYRETALKY-----HPDKQAALLF 135
           E    Q  Y  + LS     ++        +D  +    +  + +             LF
Sbjct: 10  ETGEHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 136 ----AEETEAAKQAKKDEIETHFKAVQEAY-EVLIDP-VKRRIYDSTDE--FDDAIPADC 187
               +++ E  ++  ++ +  ++K +          P +  R+Y    +  ++D      
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND------ 122

Query: 188 APQDF--YKVFGPAFTRNGRWSANQLVP---------------SLGDE---NTPLKEVDN 227
             Q F  Y V         R +  +L P                +  +   +  ++   +
Sbjct: 123 -NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 228 FYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNA 287
           F  FW + K+        E  LE  +   ++             +R +  + I+  + + 
Sbjct: 182 FKIFWLNLKNCNS----PETVLEMLQKLLYQ-------IDPNWTSRSDHSSNIKLRIHSI 230

Query: 288 YKRDPRILKRKEAEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQ 347
                R+LK K  E            L   L                V+  K      L 
Sbjct: 231 QAELRRLLKSKPYENC---------LLV--L--------------LNVQNAKAWNAFNLS 265

Query: 348 QKKVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKM-- 405
                   K LL    TR + ++  +++     +S +      M+   +++++L  K   
Sbjct: 266 C-------KILL---TTRFKQVTDFLSAATTTHISLDHHS---MTLTPDEVKSLLLKYLD 312

Query: 406 EKSEGL-EQAK------------LIRNAVGHADESEAKKQDEKKNVQQNGSVETNGSTLL 452
            + + L  +               IR+ +   D  +    D+   + ++ S+       L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNV-----L 366

Query: 453 KSFEKKEKPWSKEEIELLRKGMQKYPKGT-SRRWEVISEYIGTGRSVEEILK--ATKTVL 509
           +  E ++     + + +        P    S  W  + +       V  ++      +++
Sbjct: 367 EPAEYRK---MFDRLSVFPPSA-HIPTILLSLIWFDVIKSD-----VMVVVNKLHKYSLV 417

Query: 510 LQKPDGAKAF--DSFLEKRKPAQSIAS 534
            ++P  +       +LE +   ++  +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYA 444

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-04
 Identities = 56/361 (15%), Positives = 105/361 (29%), Gaps = 86/361 (23%)

Query: 51  LGCEEDVEVDDQKV---SNDKEQTCFPSYESYSSKGKKKSGEGSNQQDHYALLGLSHLRY 107
           L C         K+   +  K+ T F S  + +              +  +LL    L+Y
Sbjct: 264 LSC---------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----LKY 310

Query: 108 LATEDQIRKSYRETALKYHPDKQA--ALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLI 165
           L    Q         L  +P + +  A    +        K    +     ++ +  VL 
Sbjct: 311 LDCRPQ---DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 166 DPVKRRIYDSTDEF-DDA-IPADC-----------APQDFYKVFGPAFTRNGRWSANQL- 211
               R+++D    F   A IP                               +   + + 
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 212 VPSL-------GDENTPL-KEVDNFYNFWYSFKSWREFP-HADEF----------DLEQA 252
           +PS+        +    L + + + YN   +F S    P + D++          ++E  
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 253 ESRDHK-------RWMERQNAKL--TEKARKEEYARIRTLVD-NAYKRDPRILKRKEAEK 302
           E            R++E    K+     A     + + TL     YK    I       K
Sbjct: 488 ERMTLFRMVFLDFRFLE---QKIRHDSTAWNASGSILNTLQQLKFYKP--YI--CDNDPK 540

Query: 303 AEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKK---VKEKEKKLL 359
            E+       +L K   EE    +          +   +  +AL  +     +E  K++ 
Sbjct: 541 YERLVNAILDFLPK--IEENLICS----------KYTDLLRIALMAEDEAIFEEAHKQVQ 588

Query: 360 R 360
           R
Sbjct: 589 R 589

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 49/253 (19%), Positives = 102/253 (40%), Gaps = 21/253 (8%)

Query: 238  WREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRIL-- 295
              E     E +  +      K+ +E    ++  +  +EE  R + L     K   ++L  
Sbjct: 902  QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE-ERSQQLQAEKKKMQQQMLDL 960

Query: 296  -KRKEAEKAEKQKKKEAKY-LAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQ----K 349
             ++ E E+A +QK +  K     K+++ E      E++  K+ +E+++ E  +       
Sbjct: 961  EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020

Query: 350  KVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSE 409
              +E++ K L K + +  ++ +       L+V  +  E      + +  R L    E S+
Sbjct: 1021 AEEEEKAKNLTKLKNKHESMISE------LEVRLKKEEKSRQELE-KIKRKLEG--ESSD 1071

Query: 410  GLEQAKLIRNAVGHADESEAKKQDEKKNVQQNGSVETN-GSTLLKSFEKKEKPWS--KEE 466
              EQ   ++  +       AKK++E +        ET+  +  LK   + E   S  +E+
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131

Query: 467  IELLRKGMQKYPK 479
            +E  +    K  K
Sbjct: 1132 LESEKAARNKAEK 1144

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 42/226 (18%), Positives = 86/226 (38%), Gaps = 27/226 (11%)

Query: 255  RDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILK----RKEAEKAEKQKKKE 310
              H  WM              +   ++   +   +   R  K     KE E+   Q  +E
Sbjct: 834  VXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEE 893

Query: 311  AKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQ--QKKVKEKEKKL--LRKERTRL 366
               L +KLQ E    A  EE R ++  +K+  E  L   + +++E+E++   L+ E+ ++
Sbjct: 894  KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953

Query: 367  RTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSEGLEQAKLIRNAVGHADE 426
            +                + +  L    + E+      ++EK     + K + + +   ++
Sbjct: 954  Q----------------QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997

Query: 427  SEAKKQDEKKNVQQNGSVETNGSTLLKSFEKKEKPWSKEEIELLRK 472
               K   E+K +++  S  T   T L   E+K K  +K + +    
Sbjct: 998  QNNKLTKERKLLEERVSDLT---TNLAEEEEKAKNLTKLKNKHESM 1040

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 53.2 bits (127), Expect = 3e-08
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 91  SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEI 150
              +D+++L+  +   +     +++  Y++     HPD  +            Q +KD  
Sbjct: 40  DPTRDYFSLMDCNR-SFRVDTAKLQHRYQQLQRLVHPDFFSQ---------RSQTEKDFS 89

Query: 151 ETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDA 182
           E H   V +AY+ L+ P+ R +Y       + 
Sbjct: 90  EKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEI 121

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 51.9 bits (124), Expect = 7e-08
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 21/86 (24%)

Query: 94  QDHYALLGLSHLRYLAT----EDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDE 149
              Y L   +  + L      + ++RK YR+   ++HPD        + +E         
Sbjct: 11  STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDM-----AQQGSE--------- 56

Query: 150 IETHFKAVQEAYEVLIDPVKRRIYDS 175
                  + +AY  L DP++R  Y  
Sbjct: 57  ---QSSTLNQAYHTLKDPLRRSQYML 79

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 39/244 (15%), Positives = 91/244 (37%), Gaps = 25/244 (10%)

Query: 231  FWYSFKSWREFPHA-DEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYK 289
            F   +   + +    D     QA  R +    + Q      K+   +      L    Y 
Sbjct: 825  FQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYH 884

Query: 290  RDPRILKRKEAEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQK 349
            R  + +   +        K+E K L      +  AR+ E  ++  +  E ++ +  LQ+K
Sbjct: 885  RTLKAIVYLQCCYRRMMAKRELKKL------KIEARSVERYKKLHIGLENKIMQ--LQRK 936

Query: 350  KVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKSE 409
               +++ K  +    ++  L  + +++      TE + S     D+E+LR   ++ + + 
Sbjct: 937  --IDEQNKEYKSLLEKMNNLEITYSTE------TEKLRS-----DVERLRMSEEEAKNAT 983

Query: 410  GLEQAKLIRNAVGHADESEAKKQDEKKNVQ-QNGSVETNGSTLLKSFEKKEKPWSKEEIE 468
               +   ++  +    +   + Q EKK ++      +     L+   +++      E+ E
Sbjct: 984  --NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041

Query: 469  LLRK 472
            L R+
Sbjct: 1042 LNRR 1045

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 9/122 (7%)

Query: 251  QAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRI----LKRKEAEKAEKQ 306
              E+   +  +ER   +++E+  K    R+ +L +   K    +     ++K  E+   +
Sbjct: 959  STETEKLRSDVER--LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016

Query: 307  KKKEAKYLAKKLQEEEAA-RAAEEERRRKVEEEKRVAEVALQQKKVKEKEKKLLRKERTR 365
             K E + L  +L+E+    +  +EE  R++ ++ +  E+    +K   +E K L  +   
Sbjct: 1017 YKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK--EITETMEKKLVEETKQLELDLND 1074

Query: 366  LR 367
             R
Sbjct: 1075 ER 1076

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 46.5 bits (110), Expect = 7e-07
 Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 19/84 (22%)

Query: 91  SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEI 150
           ++++    LL L   +      +++++Y++ +L  HPDK  +                  
Sbjct: 8   ADKERLLELLKLPR-QLWGDFGRMQQAYKQQSLLLHPDKGGS------------------ 48

Query: 151 ETHFKAVQEAYEVLIDPVKRRIYD 174
               + +   +      V     +
Sbjct: 49  HALMQELNSLWGTFKTEVYNLRMN 72

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 108 LATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDP 167
           L T +Q++K YR+  L  HPDK              Q  +   +  F  + +A+    + 
Sbjct: 128 LVTPEQVKKVYRKAVLVVHPDKATG-----------QPYEQYAKMIFMELNDAWSEFENQ 176

Query: 168 VKRRIY 173
            ++ +Y
Sbjct: 177 GQKPLY 182

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 11/94 (11%), Positives = 30/94 (31%), Gaps = 22/94 (23%)

Query: 248 DLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQK 307
           D    E    ++W E Q  +L E     +                     ++  + + +K
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAASK-------------------VMEQEWREKAKK 118

Query: 308 KKE---AKYLAKKLQEEEAARAAEEERRRKVEEE 338
             E    +   +  + +   R A++   ++ + +
Sbjct: 119 DLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 43.2 bits (101), Expect = 8e-05
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 296 KRKEAEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEVALQQKKVKEKE 355
             +E E   K ++++ K L +    + A++  E+E R K +++  + E   +Q +  EK 
Sbjct: 80  LTQEPESIRKWREEQRKRLQEL---DAASKVMEQEWREKAKKD--LEEWNQRQSEQVEKN 134

Query: 356 KKLLRKE 362
           K   R  
Sbjct: 135 KINNRIA 141

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 42.8 bits (101), Expect = 6e-06
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 454 SFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEI 501
                ++ W  +E  LL    +    G    W  I++Y+G  R+ EE 
Sbjct: 4   GSSGFDENWGADEELLLIDACETLGLG---NWADIADYVGNARTKEEC 48

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 43.0 bits (101), Expect = 9e-06
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 453 KSFEKKEKPWSKEEIELLRKGMQKYPKG--TSRRWEVISEYIGTGRSVEEI 501
            S     + W+ EE + L + + KYP     SRRW+ I++ +G  R+ +++
Sbjct: 2   SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQV 51

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 580 GVSSSSDQDAWSAVQERALVQALKTFPKE--TSQRWERVATAVPGKTVIQC 628
           G S SS    W+  +++ L Q L  +P E   S+RW+++A  +  +T  Q 
Sbjct: 1   GSSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQV 51

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 442 GSVETNGSTLLKSFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEI 501
           GS  ++G+          + W+++E  LL + ++ Y       W  +SE++G+ R+ +E 
Sbjct: 1   GSSGSSGTLAKSKGASAGREWTEQETLLLLEALEMYK----DDWNKVSEHVGS-RTQDEC 55

Query: 502 LK 503
           + 
Sbjct: 56  IL 57

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 568 TSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQ 627
           +S     +  + G S+  +   W+  +   L++AL+ +       W +V+  V  +T  +
Sbjct: 2   SSGSSGTLAKSKGASAGRE---WTEQETLLLLEALEMYKD----DWNKVSEHVGSRTQDE 54

Query: 628 CKKKFASL 635
           C   F  L
Sbjct: 55  CILHFLRL 62

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 580 GVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKF 632
           G S SS   +W+A +E AL++A+          W+ VA  +  KT  +C+K +
Sbjct: 1   GSSGSSGDPSWTAQEEMALLEAVMDCGF---GNWQDVANQMCTKTKEECEKHY 50

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 454 SFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKP 513
           S    +  W+ +E   L + +     G    W+ ++  + T ++ EE  K          
Sbjct: 3   SGSSGDPSWTAQEEMALLEAVMDCGFG---NWQDVANQMCT-KTKEECEKHYMKYFSGPS 58

Query: 514 DG 515
            G
Sbjct: 59  SG 60

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 40.2 bits (94), Expect = 8e-05
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 456 EKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEI 501
                 W+ EE EL  +G+ K+ +    RW  IS+ IG+ R+V ++
Sbjct: 6   SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGS-RTVLQV 46

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 21/185 (11%), Positives = 50/185 (27%), Gaps = 12/185 (6%)

Query: 232  WYSFKSWREFPHADEFDLEQAESRD--HKRWMERQNAKLTEKARKEEYARIRTLVDNAYK 289
            + S ++       + F      + +     W   + A+           + +  +    +
Sbjct: 830  YNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ 889

Query: 290  RDPRILKRKEAEKAEKQKKKEAKYLAKKLQEEEAA-RAAEEERRRKVEEEKRVAEVALQQ 348
            +  RILK+ E     K     +      +   +A  +  E         E +        
Sbjct: 890  KYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNS---DL 946

Query: 349  KKVKEKEKKLLRKERTRLRTLSASVTSQHLLDVSTEDVESLCMSFDMEQLRNLCDKMEKS 408
              +  +  +L       L     +  +Q    V +              L    ++++K 
Sbjct: 947  LSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYK------NTLLAELERLQKI 1000

Query: 409  EGLEQ 413
            E L  
Sbjct: 1001 EDLHH 1005

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 108 LATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVL 164
           +   + +RKSY+   L  HPDK      +         +K   E  F+ +QEA++  
Sbjct: 51  MIEGNAVRKSYQRALLILHPDKLQQKGASAN-------QKYMAEKVFELLQEAWDHF 100

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 108 LATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLID 166
           L T +Q++K YR+  L  HP K              Q  +   +  F  + +A+    +
Sbjct: 44  LVTPEQVKKVYRKAVLVVHPCKATG-----------QPYEQYAKMIFMELNDAWSEFEN 91

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 20/80 (25%)

Query: 92  NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIE 151
           N ++   +L L+      T+ ++++ +R+  L  HPDK  +         A +       
Sbjct: 12  NSKEALQILNLT--ENTLTKKKLKEVHRKIMLANHPDKGGS------PFLATK------- 56

Query: 152 THFKAVQEAYEVLIDPVKRR 171
                + EA + L      +
Sbjct: 57  -----INEAKDFLEKRGISK 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	646
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.84
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.83
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.82
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.81
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.78
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.75
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.71
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.71
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.71
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.71
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.7
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.69
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.69
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.69
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.68
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.68
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.67
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.67
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.67
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.66
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.65
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.65
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.64
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.63
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.6
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.6
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.59
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.59
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.57
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.57
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.56
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.54
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.53
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.53
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.53
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.51
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	99.5
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.5
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.5
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.5
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.49
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.46
2guz_A	71	Mitochondrial import inner membrane translocase su	99.39
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.38
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.32
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.31
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.29
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.28
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.23
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.18
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.14
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	99.13
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.11
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.1
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.06
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.03
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.02
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.01
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.01
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	98.99
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	98.95
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	98.93
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	98.9
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	98.9
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	98.89
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	98.85
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	98.85
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.84
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	98.84
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	98.83
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	98.81
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.28
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	98.78
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	98.78
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	98.77
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	98.69
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	98.69
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	98.68
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.68
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	98.65
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	98.59
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	98.56
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	98.54
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	98.5
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	98.44
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	98.43
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.37
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.36
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	98.35
2guz_B	65	Mitochondrial import inner membrane translocase su	98.32
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	98.3
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.26
2crg_A	70	Metastasis associated protein MTA3; transcription	98.24
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	98.24
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	97.54
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	98.22
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.21
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	98.18
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.17
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.13
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	98.11
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	98.1
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	98.05
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.98
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	97.95
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	97.9
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.89
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.02
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.42
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	97.37
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	97.21
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.16
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.12
2crg_A	70	Metastasis associated protein MTA3; transcription	96.86
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.84
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.82
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.63
2lwx_A	108	Zuotin; J-protein, molecular chaperone, pleiotropi	96.26
4gmq_A	103	Putative ribosome associated protein; ribosome bin	96.14
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	95.91
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	95.91
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	95.57
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	95.5
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	95.44
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	95.4
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	94.67
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	93.66
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	93.54
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	92.6
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	91.58
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	89.03

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.84  E-value=1e-20  Score=169.24  Aligned_cols=101  Identities=14%  Similarity=0.303  Sum_probs=88.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCcch
Q 006420          460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTTR  539 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~~r  539 (646)
                      ++||.||+.+|.++|..|+.   .+|..||.+|| +||++||+.||.++|                              
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L------------------------------   47 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMI-TRNPRQCRERWNNYI------------------------------   47 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTT-TSCHHHHHHHHHHHS------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcC-CCCHHHHHHHHHHHH------------------------------
Confidence            57999999999999999954   37999999998 699999999999876                              


Q ss_pred             hhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhh
Q 006420          540 EEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATA  619 (646)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~  619 (646)
                                                                .|.....+||++||.+|..++..||    .+|..||..
T Consensus        48 ------------------------------------------~p~i~~~~WT~eEd~~L~~~~~~~G----~~W~~Ia~~   81 (107)
T 2k9n_A           48 ------------------------------------------NPALRTDPWSPEEDMLLDQKYAEYG----PKWNKISKF   81 (107)
T ss_dssp             ------------------------------------------SSCCTTCCCCHHHHHHHHHHHHHTC----SCHHHHHHH
T ss_pred             ------------------------------------------cccccccccCHHHHHHHHHHHHHhC----cCHHHHHHH
Confidence                                                      1122335899999999999999997    479999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 006420          620 VPGKTVIQCKKKFASLKENFR  640 (646)
Q Consensus       620 Vpgrt~~~c~~Ryk~l~~~vk  640 (646)
                      |||||..+|++||..|.....
T Consensus        82 l~gRt~~~~k~rw~~l~r~~~  102 (107)
T 2k9n_A           82 LKNRSDNNIRNRWMMIARHRA  102 (107)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhhHH
Confidence            999999999999998876543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.83  E-value=1.5e-20  Score=167.46  Aligned_cols=99  Identities=29%  Similarity=0.525  Sum_probs=86.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT  537 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~  537 (646)
                      ..++||++|+.+|.++|..|+.   .+|..||.+|+ |||.++|+.||.++|                            
T Consensus         3 ~k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l----------------------------   50 (105)
T 1gv2_A            3 IKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLK-GRIGKQCRERWHNHL----------------------------   50 (105)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTST-TCCHHHHHHHHHHTT----------------------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhhc-CCCHHHHHHHHHhcc----------------------------
Confidence            3578999999999999999954   36999999998 699999999999865                            


Q ss_pred             chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420          538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA  617 (646)
Q Consensus       538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA  617 (646)
                                                                  .|.....+||++|+.+|..++..||    .+|..||
T Consensus        51 --------------------------------------------~p~~~~~~Wt~eEd~~L~~~~~~~G----~~W~~Ia   82 (105)
T 1gv2_A           51 --------------------------------------------NPEVKKTSWTEEEDRIIYQAHKRLG----NRWAEIA   82 (105)
T ss_dssp             --------------------------------------------CCCCCCCCCCHHHHHHHHHHHHHHS----SCHHHHH
T ss_pred             --------------------------------------------CCcccccCCCHHHHHHHHHHHHHhC----CCHHHHH
Confidence                                                        1122335899999999999999997    4799999


Q ss_pred             hhCCCCCHHHHHHHHHHHH
Q 006420          618 TAVPGKTVIQCKKKFASLK  636 (646)
Q Consensus       618 ~~Vpgrt~~~c~~Ryk~l~  636 (646)
                      ..|||||..+|++||..|.
T Consensus        83 ~~l~gRt~~~~k~rw~~~~  101 (105)
T 1gv2_A           83 KLLPGRTDNAIKNHWNSTM  101 (105)
T ss_dssp             TTCTTCCHHHHHHHHHHHT
T ss_pred             HHcCCCCHHHHHHHHHHHH
Confidence            9999999999999998763

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.82  E-value=6.6e-20  Score=168.64  Aligned_cols=101  Identities=24%  Similarity=0.538  Sum_probs=88.8

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT  537 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~  537 (646)
                      +.++||+||+.+|.++|..|  |+  +|..||.+|+ |||.+||+.||.++|                            
T Consensus        10 kk~~WT~eED~~L~~~v~~~--G~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l----------------------------   56 (126)
T 3osg_A           10 KKQKFTPEEDEMLKRAVAQH--GS--DWKMIAATFP-NRNARQCRDRWKNYL----------------------------   56 (126)
T ss_dssp             SSCCCCHHHHHHHHHHHHHH--TT--CHHHHHHTCT-TCCHHHHHHHHHHHT----------------------------
T ss_pred             CCCCCCHHHHHHHHHHHHHh--CC--CHHHHHHHcC-CCCHHHHHHHHhhhc----------------------------
Confidence            56899999999999999999  54  6999999998 699999999999876                            


Q ss_pred             chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420          538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA  617 (646)
Q Consensus       538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA  617 (646)
                                                                  .|.....+||.+||.+|..++..||    .+|..||
T Consensus        57 --------------------------------------------~p~~~~~~WT~eEd~~L~~~v~~~G----~~W~~Ia   88 (126)
T 3osg_A           57 --------------------------------------------APSISHTPWTAEEDALLVQKIQEYG----RQWAIIA   88 (126)
T ss_dssp             --------------------------------------------STTSCCSCCCHHHHHHHHHHHHHHC----SCHHHHH
T ss_pred             --------------------------------------------ccccccccCCHHHHHHHHHHHHHHC----cCHHHHH
Confidence                                                        1112234799999999999999997    4799999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHHH
Q 006420          618 TAVPGKTVIQCKKKFASLKENF  639 (646)
Q Consensus       618 ~~Vpgrt~~~c~~Ryk~l~~~v  639 (646)
                      ..|||||..+|++||..|..-+
T Consensus        89 ~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           89 KFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             TTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999987654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.81  E-value=1e-19  Score=167.70  Aligned_cols=99  Identities=27%  Similarity=0.521  Sum_probs=86.4

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT  537 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~  537 (646)
                      ..++||.||+.+|.++|+.|+.   .+|..||.+|+ |||..+|+.||.++|                            
T Consensus        26 ~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l----------------------------   73 (128)
T 1h8a_C           26 NKGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHLK-GRIGKQCRERWHNHL----------------------------   73 (128)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHSS-SCCHHHHHHHHHHTT----------------------------
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhc-CCcHHHHHHHHHHhc----------------------------
Confidence            4679999999999999999954   37999999998 699999999999865                            


Q ss_pred             chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420          538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA  617 (646)
Q Consensus       538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA  617 (646)
                                                                  .|.....+||++||.+|..++..||    .+|..||
T Consensus        74 --------------------------------------------~p~~~~~~WT~eEd~~L~~~~~~~G----~~W~~Ia  105 (128)
T 1h8a_C           74 --------------------------------------------NPEVKKTSWTEEEDRIIYQAHKRLG----NRWAEIA  105 (128)
T ss_dssp             --------------------------------------------CSSSCCSCCCHHHHHHHHHHHHHHC----SCHHHHG
T ss_pred             --------------------------------------------ccccccccCCHHHHHHHHHHHHHHC----cCHHHHH
Confidence                                                        1112335799999999999999997    4799999


Q ss_pred             hhCCCCCHHHHHHHHHHHH
Q 006420          618 TAVPGKTVIQCKKKFASLK  636 (646)
Q Consensus       618 ~~Vpgrt~~~c~~Ryk~l~  636 (646)
                      ..|||||..+|++||..|.
T Consensus       106 ~~l~gRt~~~~k~r~~~~~  124 (128)
T 1h8a_C          106 KLLPGRTDNAVKNHWNSTM  124 (128)
T ss_dssp             GGSTTCCHHHHHHHHHTTT
T ss_pred             HHCCCCCHHHHHHHHHHHH
Confidence            9999999999999998663

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.78  E-value=4e-19  Score=164.47  Aligned_cols=98  Identities=18%  Similarity=0.411  Sum_probs=85.3

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCcc
Q 006420          459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTT  538 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~~  538 (646)
                      .++||.||+.+|..+|..|+.   ..|..||.+|+ |||++||+.||.++|                             
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l-----------------------------   48 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGP---QNWPRITSFLP-NRSPKQCRERWFNHL-----------------------------   48 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCS---CCGGGGTTSCT-TSCHHHHHHHHHHHT-----------------------------
T ss_pred             CCCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHC-CCCHHHHHHHHhhcc-----------------------------
Confidence            368999999999999999943   36999999998 699999999999876                             


Q ss_pred             hhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHh
Q 006420          539 REEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVAT  618 (646)
Q Consensus       539 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~  618 (646)
                                                                 .|....++||.+||.+|..++..||    .+|..||.
T Consensus        49 -------------------------------------------~p~~~~~~Wt~eEd~~L~~~~~~~G----~~W~~Ia~   81 (131)
T 3zqc_A           49 -------------------------------------------DPAVVKHAWTPEEDETIFRNYLKLG----SKWSVIAK   81 (131)
T ss_dssp             -------------------------------------------STTCCCSCCCHHHHHHHHHHHHHSC----SCHHHHTT
T ss_pred             -------------------------------------------CccccCCCCCHHHHHHHHHHHHHHC----cCHHHHHH
Confidence                                                       1122234799999999999999997    47999999


Q ss_pred             hCCCCCHHHHHHHHHHHH
Q 006420          619 AVPGKTVIQCKKKFASLK  636 (646)
Q Consensus       619 ~Vpgrt~~~c~~Ryk~l~  636 (646)
                      .|||||..+|++||..+.
T Consensus        82 ~l~gRt~~~~k~rw~~~l   99 (131)
T 3zqc_A           82 LIPGRTDNAIKNRWNSSI   99 (131)
T ss_dssp             TSTTCCHHHHHHHHHHTT
T ss_pred             HcCCCCHHHHHHHHHHHH
Confidence            999999999999997654

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.75  E-value=3e-18  Score=163.61  Aligned_cols=99  Identities=29%  Similarity=0.525  Sum_probs=86.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT  537 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~  537 (646)
                      ..++||.+|+.+|.++|+.|+.   .+|..||.+|+ |||..+|..+|.++|                            
T Consensus        57 ~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l----------------------------  104 (159)
T 1h89_C           57 IKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLK-GRIGKQCRERWHNHL----------------------------  104 (159)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTST-TCCHHHHHHHHHHTT----------------------------
T ss_pred             CCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHcC-CCCHHHHHHHHHHHh----------------------------
Confidence            4579999999999999999943   47999999998 699999999999865                            


Q ss_pred             chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420          538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA  617 (646)
Q Consensus       538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA  617 (646)
                                                                  .|.....+||++|+.+|..++..||    .+|..||
T Consensus       105 --------------------------------------------~p~~~~~~WT~eEd~~L~~~~~~~g----~~W~~Ia  136 (159)
T 1h89_C          105 --------------------------------------------NPEVKKTSWTEEEDRIIYQAHKRLG----NRWAEIA  136 (159)
T ss_dssp             --------------------------------------------CTTSCCSCCCHHHHHHHHHHHHHHC----SCHHHHH
T ss_pred             --------------------------------------------CccccccCCChHHHHHHHHHHHHHC----CCHHHHH
Confidence                                                        1112335899999999999999996    5899999


Q ss_pred             hhCCCCCHHHHHHHHHHHH
Q 006420          618 TAVPGKTVIQCKKKFASLK  636 (646)
Q Consensus       618 ~~Vpgrt~~~c~~Ryk~l~  636 (646)
                      ..|||||..+|++||..|.
T Consensus       137 ~~l~gRt~~~~knr~~~~~  155 (159)
T 1h89_C          137 KLLPGRTDNAIKNHWNSTM  155 (159)
T ss_dssp             TTSTTCCHHHHHHHHHTTT
T ss_pred             HHCCCCCHHHHHHHHHHHH
Confidence            9999999999999998763

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=5.1e-18  Score=143.23  Aligned_cols=73  Identities=37%  Similarity=0.644  Sum_probs=65.5

Q ss_pred             CCCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchh
Q 006420           89 EGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPV  168 (646)
Q Consensus        89 ~~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~  168 (646)
                      +.....|||+||||++   .++..+||++||+++++||||++++              .+.+.+.|+.|++||+||+||.
T Consensus         2 s~~~~~~~y~iLgv~~---~a~~~~Ik~ayr~l~~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~~L~d~~   64 (79)
T 2dn9_A            2 SSGSSGDYYQILGVPR---NASQKEIKKAYYQLAKKYHPDTNKD--------------DPKAKEKFSQLAEAYEVLSDEV   64 (79)
T ss_dssp             CSSCCSCHHHHHTCCT---TCCHHHHHHHHHHHHHHTCTTTCSS--------------CTTHHHHHHHHHHHHHHHHSHH
T ss_pred             CCCCCCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------CHHHHHHHHHHHHHHHHHCCHH
Confidence            4566789999999999   9999999999999999999999974              2236789999999999999999


Q ss_pred             hhhhhcccCC
Q 006420          169 KRRIYDSTDE  178 (646)
Q Consensus       169 kR~~YDs~~~  178 (646)
                      +|..||.++.
T Consensus        65 ~R~~YD~~g~   74 (79)
T 2dn9_A           65 KRKQYDAYGS   74 (79)
T ss_dssp             HHHHHHHSCC
T ss_pred             HHHHHHhccC
Confidence            9999999864

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=9.3e-18  Score=141.33  Aligned_cols=72  Identities=40%  Similarity=0.693  Sum_probs=64.8

Q ss_pred             CCCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchh
Q 006420           89 EGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPV  168 (646)
Q Consensus        89 ~~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~  168 (646)
                      +.....|||+||||++   .++..+||++||+++++||||+++.               ..+.+.|+.|++||+||+||.
T Consensus         2 s~~~~~~~y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~---------------~~~~~~f~~i~~Ay~~L~d~~   63 (78)
T 2ctp_A            2 SSGSSGDYYEILGVSR---GASDEDLKKAYRRLALKFHPDKNHA---------------PGATEAFKAIGTAYAVLSNPE   63 (78)
T ss_dssp             CCSCSCCHHHHHTCCT---TCCHHHHHHHHHHHHTTSCTTTCSS---------------HHHHHHHHHHHHHHHHHTSHH
T ss_pred             CCCCCCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------ccHHHHHHHHHHHHHHHCCHH
Confidence            3456789999999999   9999999999999999999999973               235789999999999999999


Q ss_pred             hhhhhcccCC
Q 006420          169 KRRIYDSTDE  178 (646)
Q Consensus       169 kR~~YDs~~~  178 (646)
                      +|..||.++.
T Consensus        64 ~R~~YD~~~~   73 (78)
T 2ctp_A           64 KRKQYDQFGS   73 (78)
T ss_dssp             HHHHHHHTCS
T ss_pred             HHHHHHHcCc
Confidence            9999999865

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.71  E-value=2.7e-18  Score=152.41  Aligned_cols=70  Identities=47%  Similarity=0.790  Sum_probs=63.3

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   .+|.++||++||+|+++||||++++              ...+.+.|+.|++||+||+||.+|..
T Consensus         2 ~~~~y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~--------------~~~a~~~f~~i~~Ay~~L~d~~~R~~   64 (103)
T 1bq0_A            2 KQDYYEILGVSK---TAEEREIRKAYKRLAMKYHPDRNQG--------------DKEAEAKFKEIKEAYEVLTDSQKRAA   64 (103)
T ss_dssp             CCCSTTTTSSCS---SCCHHHHHHHHHHHHTTTCTTTCTT--------------TCTHHHHHHHHTTTTTSTTCSHHHHH
T ss_pred             CCCHHHHcCcCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------cHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            468999999999   8999999999999999999999984              12357899999999999999999999


Q ss_pred             hcccCCC
Q 006420          173 YDSTDEF  179 (646)
Q Consensus       173 YDs~~~~  179 (646)
                      ||..+..
T Consensus        65 YD~~~~~   71 (103)
T 1bq0_A           65 YDQYGHA   71 (103)
T ss_dssp             TTTSTTT
T ss_pred             HHHHhhh
Confidence            9998764

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=9.9e-18  Score=142.45  Aligned_cols=73  Identities=47%  Similarity=0.711  Sum_probs=65.1

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      .....|||+||||++   .++.++||+|||+++++||||+++..             ...+.+.|+.|++||+||+||.+
T Consensus         5 ~~~~~~~y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~~-------------~~~a~~~f~~i~~Ay~~L~d~~~   68 (82)
T 2ej7_A            5 SSGMVDYYEVLDVPR---QASSEAIKKAYRKLALKWHPDKNPEN-------------KEEAERRFKQVAEAYEVLSDAKK   68 (82)
T ss_dssp             CSSSCCHHHHTTCCT---TCCHHHHHHHHHHHHTTSCTTTCSTT-------------HHHHHHHHHHHHHHHHHHSSTTH
T ss_pred             CCCCcCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCc-------------HHHHHHHHHHHHHHHHHHCCHHH
Confidence            345689999999999   99999999999999999999999742             23568899999999999999999


Q ss_pred             hhhhcccCC
Q 006420          170 RRIYDSTDE  178 (646)
Q Consensus       170 R~~YDs~~~  178 (646)
                      |..||.++.
T Consensus        69 R~~YD~~g~   77 (82)
T 2ej7_A           69 RDIYDRYGS   77 (82)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHcCc
Confidence            999999764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.70  E-value=7.8e-18  Score=160.70  Aligned_cols=99  Identities=20%  Similarity=0.498  Sum_probs=51.5

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT  537 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~  537 (646)
                      ..++||.||+.+|.++|..|+.   .+|..||.+|+ +||++||+.||.++|                            
T Consensus         5 ~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l----------------------------   52 (159)
T 1h89_C            5 GKTRWTREEDEKLKKLVEQNGT---DDWKVIANYLP-NRTDVQCQHRWQKVL----------------------------   52 (159)
T ss_dssp             ------------------------------------------CHHHHHHTTT----------------------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcC-CCCHHHHHHHHHHcc----------------------------
Confidence            3568999999999999999954   36999999998 699999999999865                            


Q ss_pred             chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420          538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA  617 (646)
Q Consensus       538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA  617 (646)
                                                                  .|.....+||++||.+|..++..||.   .+|..||
T Consensus        53 --------------------------------------------~p~~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia   85 (159)
T 1h89_C           53 --------------------------------------------NPELIKGPWTKEEDQRVIKLVQKYGP---KRWSVIA   85 (159)
T ss_dssp             --------------------------------------------CTTCCCSCCCHHHHHHHHHHHHHHCS---CCHHHHH
T ss_pred             --------------------------------------------CCCcCCCCCChHHHHHHHHHHHHhCc---ccHHHHH
Confidence                                                        11223358999999999999999983   4799999


Q ss_pred             hhCCCCCHHHHHHHHHHH
Q 006420          618 TAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       618 ~~Vpgrt~~~c~~Ryk~l  635 (646)
                      ..|||||..||++||..+
T Consensus        86 ~~l~~Rt~~qcr~Rw~~~  103 (159)
T 1h89_C           86 KHLKGRIGKQCRERWHNH  103 (159)
T ss_dssp             HTSTTCCHHHHHHHHHHT
T ss_pred             HHcCCCCHHHHHHHHHHH
Confidence            999999999999999753

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=1.6e-17  Score=143.20  Aligned_cols=72  Identities=36%  Similarity=0.686  Sum_probs=64.8

Q ss_pred             CCCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchh
Q 006420           89 EGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPV  168 (646)
Q Consensus        89 ~~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~  168 (646)
                      +.....|||+||||++   .+|.++||++||+|+++||||+++.               ..+.+.|+.|++||+||+||.
T Consensus         2 s~~~~~~~y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~---------------~~a~~~f~~i~~Ay~~L~d~~   63 (88)
T 2ctr_A            2 SSGSSGSYYDILGVPK---SASERQIKKAFHKLAMKYHPDKNKS---------------PDAEAKFREIAEAYETLSDAN   63 (88)
T ss_dssp             CSCCCCSHHHHHTCCT---TCCHHHHHHHHHHHHHHTCTTTCCS---------------HHHHHHHHHHHHHHHHHHSSH
T ss_pred             CCCCCCCHHHHcCcCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------hHHHHHHHHHHHHHHHHCCHH
Confidence            3456789999999999   9999999999999999999999973               346789999999999999999


Q ss_pred             hhhhhcccCC
Q 006420          169 KRRIYDSTDE  178 (646)
Q Consensus       169 kR~~YDs~~~  178 (646)
                      +|..||..+.
T Consensus        64 ~R~~Yd~~~~   73 (88)
T 2ctr_A           64 RRKEYDTLGH   73 (88)
T ss_dssp             HHHHHHHTCH
T ss_pred             HHHHHHHhCc
Confidence            9999999763

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.69  E-value=1.4e-17  Score=139.95  Aligned_cols=68  Identities=46%  Similarity=0.810  Sum_probs=62.0

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   .+|.++||++||+++++||||++++               ..+.+.|+.|++||+||+||.+|..
T Consensus         2 ~~~~y~iLgv~~---~as~~~Ik~ayr~l~~~~HPD~~~~---------------~~~~~~f~~i~~Ay~~L~d~~~R~~   63 (77)
T 1hdj_A            2 GKDYYQTLGLAR---GASDEEIKRAYRRQALRYHPDKNKE---------------PGAEEKFKEIAEAYDVLSDPRKREI   63 (77)
T ss_dssp             CCCSHHHHTCCT---TCCHHHHHHHHHHHHHTTCTTTCCC---------------TTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------ccHHHHHHHHHHHHHHHCCHHHHHH
Confidence            468999999999   9999999999999999999999874               2357899999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.++.
T Consensus        64 Yd~~~~   69 (77)
T 1hdj_A           64 FDRYGE   69 (77)
T ss_dssp             HHHTCG
T ss_pred             HHHHcc
Confidence            999864

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.69  E-value=1.7e-17  Score=138.03  Aligned_cols=68  Identities=41%  Similarity=0.729  Sum_probs=61.1

Q ss_pred             CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420           91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR  170 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR  170 (646)
                      ....|||+||||++   .+|..+||++||+++++||||++++.                 .+.|+.|+.||+||+||.+|
T Consensus         5 ~~~~~~y~iLgl~~---~a~~~eIk~ayr~l~~~~HPD~~~~~-----------------~~~f~~i~~Ay~~L~d~~~R   64 (73)
T 2och_A            5 VKETGYYDVLGVKP---DASDNELKKAYRKMALKFHPDKNPDG-----------------AEQFKQISQAYEVLSDEKKR   64 (73)
T ss_dssp             -CCCCHHHHHTCCT---TCCHHHHHHHHHHHHHHTCTTTCTTC-----------------HHHHHHHHHHHHHHTSHHHH
T ss_pred             cCCCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCcCH-----------------HHHHHHHHHHHHHHCCHHHH
Confidence            45689999999999   99999999999999999999999741                 46899999999999999999


Q ss_pred             hhhcccCC
Q 006420          171 RIYDSTDE  178 (646)
Q Consensus       171 ~~YDs~~~  178 (646)
                      ..||.+|.
T Consensus        65 ~~YD~~g~   72 (73)
T 2och_A           65 QIYDQGGE   72 (73)
T ss_dssp             HHHHHTC-
T ss_pred             HHHHhcCC
Confidence            99999764

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=1.2e-17  Score=147.28  Aligned_cols=72  Identities=32%  Similarity=0.519  Sum_probs=64.9

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      .+...|||+||||++   .++.++||+|||+|+++||||++++              ...+.+.|+.|++||+||+||.+
T Consensus        13 ~~~~~~~Y~vLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~--------------~~~a~~~f~~i~~Ay~~L~d~~~   75 (99)
T 2yua_A           13 SYSRTALYDLLGVPS---TATQAQIKAAYYRQCFLYHPDRNSG--------------SAEAAERFTRISQAYVVLGSATL   75 (99)
T ss_dssp             SSCSSHHHHHHTCCT---TCCHHHHHHHHHHHHHHSCTTTCSS--------------CSHHHHHHHHHHHHHHHTTSHHH
T ss_pred             CCCccCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------CHHHHHHHHHHHHHHHHHCCHHH
Confidence            566789999999999   9999999999999999999999974              23467899999999999999999


Q ss_pred             hhhhcccCC
Q 006420          170 RRIYDSTDE  178 (646)
Q Consensus       170 R~~YDs~~~  178 (646)
                      |..||....
T Consensus        76 R~~YD~~l~   84 (99)
T 2yua_A           76 RRKYDRGLL   84 (99)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHhcc
Confidence            999998653

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.68  E-value=3.6e-17  Score=142.45  Aligned_cols=78  Identities=27%  Similarity=0.479  Sum_probs=66.2

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      .+...|||+||||++   .++..+||+|||+++++||||+++.....        .....+.+.|+.|++||+||+||.+
T Consensus        12 ~~~~~~~y~iLgv~~---~as~~eIk~aYr~l~~~~HPDk~~~~~~~--------~~~~~~~~~f~~i~~Ay~~L~d~~~   80 (94)
T 1wjz_A           12 QTLKKDWYSILGADP---SANMSDLKQKYQKLILLYHPDKQSADVPA--------GTMEECMQKFIEIDQAWKILGNEET   80 (94)
T ss_dssp             SSSCSCHHHHTTCCT---TCCHHHHHHHHHHTTSSSCSTTCCTTCCH--------HHHHHHHHHHHHHHHHHHHHSSSSH
T ss_pred             cCCCCChHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCCCCh--------hhhHHHHHHHHHHHHHHHHHCCHHH
Confidence            456789999999999   99999999999999999999998742111        1134578999999999999999999


Q ss_pred             hhhhcccCC
Q 006420          170 RRIYDSTDE  178 (646)
Q Consensus       170 R~~YDs~~~  178 (646)
                      |..||....
T Consensus        81 R~~YD~~l~   89 (94)
T 1wjz_A           81 KKKYDLQRS   89 (94)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHHcc
Confidence            999998753

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.67  E-value=3.2e-17  Score=141.39  Aligned_cols=70  Identities=34%  Similarity=0.587  Sum_probs=63.6

Q ss_pred             CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420           91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR  170 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR  170 (646)
                      ....|||+||||++   .++.++||++||+++++||||++++               ..+.+.|+.|++||+||+||.+|
T Consensus        14 ~~~~d~y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~---------------~~~~~~f~~i~~Ay~~L~d~~~R   75 (88)
T 2cug_A           14 ALDFDPYRVLGVSR---TASQADIKKAYKKLAREWHPDKNKD---------------PGAEDRFIQISKAYEILSNEEKR   75 (88)
T ss_dssp             SSSSCHHHHHTCCT---TCCHHHHHHHHHHHHHHSCTTTCCS---------------TTHHHHHHHHHHHHHHHHSHHHH
T ss_pred             cCCCCHHHHcCcCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------hhHHHHHHHHHHHHHHHCCHHHH
Confidence            45689999999999   9999999999999999999999974               23578999999999999999999


Q ss_pred             hhhcccCC
Q 006420          171 RIYDSTDE  178 (646)
Q Consensus       171 ~~YDs~~~  178 (646)
                      ..||.++.
T Consensus        76 ~~YD~~g~   83 (88)
T 2cug_A           76 TNYDHYGS   83 (88)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHcCC
Confidence            99999865

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=4.4e-17  Score=141.53  Aligned_cols=73  Identities=44%  Similarity=0.714  Sum_probs=64.9

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      .....|||+||||++   .++.++||++||+|+++||||+++..             ...+.+.|+.|++||+||+||.+
T Consensus         5 ~~~~~~~y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~~-------------~~~a~~~f~~i~~Ay~~L~d~~~   68 (92)
T 2dmx_A            5 SSGMANYYEVLGVQA---SASPEDIKKAYRKLALRWHPDKNPDN-------------KEEAEKKFKLVSEAYEVLSDSKK   68 (92)
T ss_dssp             CCCCCCHHHHHTCCT---TCCTTHHHHHHHHHHHHTCTTTCSSC-------------SHHHHHHHHHHHHHHHHHHSHHH
T ss_pred             CCCCcCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCCCCCCcc-------------HHHHHHHHHHHHHHHHHHCCHHH
Confidence            345579999999999   89999999999999999999999742             24568899999999999999999


Q ss_pred             hhhhcccCC
Q 006420          170 RRIYDSTDE  178 (646)
Q Consensus       170 R~~YDs~~~  178 (646)
                      |..||..+.
T Consensus        69 R~~Yd~~~~   77 (92)
T 2dmx_A           69 RSLYDRAGC   77 (92)
T ss_dssp             HHHHHHHCS
T ss_pred             HHHHHHhCc
Confidence            999999764

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.67  E-value=1.2e-17  Score=149.89  Aligned_cols=72  Identities=43%  Similarity=0.702  Sum_probs=64.9

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      .....|||+||||++   .||.++||++||+|+++||||++++              ...+.+.|+.|++||+||+||.+
T Consensus        13 ~~~~~~~Y~vLgv~~---~as~~eIk~aYr~la~~~HPDk~~~--------------~~~a~~~f~~i~~Ay~vL~d~~~   75 (109)
T 2ctw_A           13 STSGESLYHVLGLDK---NATSDDIKKSYRKLALKYHPDKNPD--------------NPEAADKFKEINNAHAILTDATK   75 (109)
T ss_dssp             TSCSCCHHHHHTCCT---TCCHHHHHHHHHHHHHHSCTTTSTT--------------CHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCCCCCHHHHcCcCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------cHHHHHHHHHHHHHHHHHcCHHH
Confidence            445689999999999   9999999999999999999999984              23467899999999999999999


Q ss_pred             hhhhcccCC
Q 006420          170 RRIYDSTDE  178 (646)
Q Consensus       170 R~~YDs~~~  178 (646)
                      |..||.++.
T Consensus        76 R~~YD~~g~   84 (109)
T 2ctw_A           76 RNIYDKYGS   84 (109)
T ss_dssp             HHHHHHTCH
T ss_pred             HHHHHHhcc
Confidence            999999764

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=2.5e-17  Score=148.36  Aligned_cols=71  Identities=31%  Similarity=0.514  Sum_probs=64.4

Q ss_pred             CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420           91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR  170 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR  170 (646)
                      ....|||+||||++   .|+.++||+|||+++++||||++++              ...+.+.|+.|++||+||+||.+|
T Consensus        17 ~~~~d~Y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~--------------~~~a~~~f~~i~~Ay~vL~d~~~R   79 (112)
T 2ctq_A           17 EDTEDYYTLLGCDE---LSSVEQILAEFKVRALECHPDKHPE--------------NPKAVETFQKLQKAKEILTNEESR   79 (112)
T ss_dssp             CCCCCHHHHTTCCT---TSCHHHHHHHHHHHHHTTCTTTCTT--------------CSTHHHHHHHHHHHHHHHHSHHHH
T ss_pred             cCCCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------cHHHHHHHHHHHHHHHHHCCHHHH
Confidence            45689999999999   9999999999999999999999984              224678999999999999999999


Q ss_pred             hhhcccCC
Q 006420          171 RIYDSTDE  178 (646)
Q Consensus       171 ~~YDs~~~  178 (646)
                      ..||.++.
T Consensus        80 ~~YD~~~~   87 (112)
T 2ctq_A           80 ARYDHWRR   87 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhh
Confidence            99999764

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.65  E-value=2.5e-17  Score=147.60  Aligned_cols=91  Identities=24%  Similarity=0.381  Sum_probs=71.7

Q ss_pred             CccccccccccccccCCCC-CHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           91 SNQQDHYALLGLSHLRYLA-TEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~A-t~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      ....|||+||||++   .| |..+||+|||+++++||||++++.           .....+.+.|+.|++||+||+||.+
T Consensus        12 ~~~~~~y~iLgv~~---~a~s~~eIk~aYr~l~~~~HPDk~~~~-----------~~~~~a~~~f~~i~~AY~~L~d~~~   77 (109)
T 2qsa_A           12 CGLENCYDVLEVNR---EEFDKQKLAKAYRALARKHHPDRVKNK-----------EEKLLAEERFRVIATAYETLKDDEA   77 (109)
T ss_dssp             TTTSCHHHHTTCCG---GGCCHHHHHHHHHHHHHHTCGGGCCSH-----------HHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred             cCCCCHHHHcCCCC---CCCCHHHHHHHHHHHHHHHCcCCCCCc-----------cccHHHHHHHHHHHHHHHHHCCHHH
Confidence            45689999999999   89 999999999999999999998741           0134578899999999999999999


Q ss_pred             hhhhcccCCCCCCCCCCCCCCchHHhhhhhh
Q 006420          170 RRIYDSTDEFDDAIPADCAPQDFYKVFGPAF  200 (646)
Q Consensus       170 R~~YDs~~~~~~~~p~~~~~~~Ff~~f~~~F  200 (646)
                      |..||..+...+.     .-.+||..|..+|
T Consensus        78 R~~YD~~~~~~~~-----~~~~~~~~~~~~~  103 (109)
T 2qsa_A           78 KTNYDYYLDHPDQ-----RFYNYYQYYRLRA  103 (109)
T ss_dssp             HHHHHHHHHCTTC-----HHHHHHHHHHHC-
T ss_pred             HHHHHHhccCchH-----HHHHHHHHHHHHh
Confidence            9999997642211     1234555665555

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.65  E-value=6.7e-17  Score=133.64  Aligned_cols=59  Identities=24%  Similarity=0.452  Sum_probs=54.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhhc
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKS  644 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~kK~  644 (646)
                      ...+||.+|+++|++||+.||.++++||++||++|||||+.||+.||++|.+.+.+.|.
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~~~   65 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQKH   65 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCCCS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccccccc
Confidence            34579999999999999999999999999999999999999999999999888887664

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.64  E-value=8.1e-17  Score=140.01  Aligned_cols=68  Identities=46%  Similarity=0.762  Sum_probs=61.8

Q ss_pred             CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420           91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR  170 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR  170 (646)
                      ++..|||+||||++   .+|.++||++||+|+++||||++++.                 .+.|+.|++||+||+||.+|
T Consensus         5 ~~~~~~y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~~-----------------~~~f~~i~~Ay~~L~d~~~R   64 (92)
T 2o37_A            5 VKETKLYDLLGVSP---SANEQELKKGYRKAALKYHPDKPTGD-----------------TEKFKEISEAFEILNDPQKR   64 (92)
T ss_dssp             CSCCHHHHHHTCCT---TCCHHHHHHHHHHHHHHHCTTSTTCC-----------------HHHHHHHHHHHHHHTSHHHH
T ss_pred             ccCCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCh-----------------HHHHHHHHHHHHHHCCHHHH
Confidence            45689999999999   89999999999999999999999741                 35899999999999999999


Q ss_pred             hhhcccCC
Q 006420          171 RIYDSTDE  178 (646)
Q Consensus       171 ~~YDs~~~  178 (646)
                      ..||.++.
T Consensus        65 ~~YD~~~~   72 (92)
T 2o37_A           65 EIYDQYGL   72 (92)
T ss_dssp             HHHHHHCH
T ss_pred             HHHHHHCH
Confidence            99998753

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.63  E-value=9.1e-17  Score=141.67  Aligned_cols=69  Identities=45%  Similarity=0.703  Sum_probs=62.6

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   .+|.++||+|||+++++||||+++..             .+.+.+.|+.|++||+||+||.+|..|
T Consensus         2 ~d~Y~iLgv~~---~as~~eIk~aYr~la~~~HPDk~~~~-------------~~~a~~~f~~I~~AY~vL~d~~~R~~Y   65 (99)
T 2lgw_A            2 ASYYEILDVPR---SASADDIKKAYRRKALQWHPDKNPDN-------------KEFAEKKFKEVAEAYEVLSDKHKREIY   65 (99)
T ss_dssp             CCHHHHSSSCT---TSCHHHHHHHHHHHHHHTSTTTCCSC-------------CHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             CCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCcc-------------HHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            58999999999   99999999999999999999998742             345688999999999999999999999


Q ss_pred             cccCC
Q 006420          174 DSTDE  178 (646)
Q Consensus       174 Ds~~~  178 (646)
                      |..+.
T Consensus        66 D~~g~   70 (99)
T 2lgw_A           66 DRYGR   70 (99)
T ss_dssp             HHHHH
T ss_pred             HHhCc
Confidence            99753

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.60  E-value=2.9e-16  Score=141.86  Aligned_cols=67  Identities=28%  Similarity=0.395  Sum_probs=60.5

Q ss_pred             ccccccccccccccCCCCCH--HHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           92 NQQDHYALLGLSHLRYLATE--DQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        92 k~~d~Y~vLGl~~~r~~At~--~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      ...|||+||||++   .++.  .+||+|||+|+++||||++++                  .+.|+.|++||+||+||.+
T Consensus         6 ~~~~~Y~iLgv~~---~as~~~~eIk~aYr~la~~~HPDk~~~------------------~e~f~~I~~AYevL~d~~~   64 (114)
T 1gh6_A            6 ESLQLMDLLGLER---SAWGNIPLMRKAYLKKCKEFHPDKGGD------------------EEKMKKMNTLYKKMEDGVK   64 (114)
T ss_dssp             HHHHHHHHTTCCT---TSCSCHHHHHHHHHHTTTTCCTTTCCT------------------TTTTHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHcCCCC---CCCcCHHHHHHHHHHHHHHHCCCCCcc------------------HHHHHHHHHHHHHHCCHHH
Confidence            3578999999999   8998  999999999999999999873                  3589999999999999999


Q ss_pred             hhhhcccCCC
Q 006420          170 RRIYDSTDEF  179 (646)
Q Consensus       170 R~~YDs~~~~  179 (646)
                      |+.||.++..
T Consensus        65 R~~~~~~~~~   74 (114)
T 1gh6_A           65 YAHQPDFGGF   74 (114)
T ss_dssp             SCCSSCCSCC
T ss_pred             HHHhhhcccc
Confidence            9999987653

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.60  E-value=4.8e-16  Score=153.22  Aligned_cols=69  Identities=39%  Similarity=0.634  Sum_probs=62.8

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||++   +||.++||+|||+++++||||++++              ...+.+.|+.|++||+||+||.+|..|
T Consensus         2 ~~~y~~l~~~~---~a~~~~ik~ay~~l~~~~HPD~~~~--------------~~~~~~~f~~i~~Ay~~L~~~~~r~~y   64 (210)
T 3apq_A            2 QNFYSLLGVSK---TASSREIRQAFKKLALKLHPDKNPN--------------NPNAHGDFLKINRAYEVLKDEDLRKKY   64 (210)
T ss_dssp             CCHHHHHTCCT---TCCHHHHHHHHHHHHHHHCGGGCTT--------------CTTHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             CCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------ChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            58999999999   9999999999999999999999974              234678999999999999999999999


Q ss_pred             cccCCC
Q 006420          174 DSTDEF  179 (646)
Q Consensus       174 Ds~~~~  179 (646)
                      |.++..
T Consensus        65 d~~~~~   70 (210)
T 3apq_A           65 DKYGEK   70 (210)
T ss_dssp             HHHTTT
T ss_pred             HHhccc
Confidence            998753

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.59  E-value=5.8e-16  Score=128.73  Aligned_cols=58  Identities=28%  Similarity=0.601  Sum_probs=53.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhh
Q 006420          584 SSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRS  641 (646)
Q Consensus       584 ~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~  641 (646)
                      .+...+||.+|+++|+.||++||.++++||.+||.+|||||.+||++||..|+++|-+
T Consensus        15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~~   72 (73)
T 2cqr_A           15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPSS   72 (73)
T ss_dssp             TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCCC
T ss_pred             ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHcccC
Confidence            4455689999999999999999998899999999999999999999999999998754

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.59  E-value=2.4e-15  Score=130.67  Aligned_cols=58  Identities=36%  Similarity=0.610  Sum_probs=54.6

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhhc
Q 006420          587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKS  644 (646)
Q Consensus       587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~kK~  644 (646)
                      ..+||.+||++|++||+.||.++++||.+||.+|||||++||++||..|+++|+..++
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ies   65 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES   65 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhc
Confidence            3579999999999999999999999999999999999999999999999999987664

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.57  E-value=3.3e-16  Score=151.02  Aligned_cols=90  Identities=24%  Similarity=0.326  Sum_probs=68.7

Q ss_pred             ccccccccccccccCCCCC--HHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           92 NQQDHYALLGLSHLRYLAT--EDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        92 k~~d~Y~vLGl~~~r~~At--~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      ...|||+||||++   +|+  .++||+|||+++++||||++++                  .+.|+.|++||+||+||.+
T Consensus         9 ~~~d~Y~vLGl~~---~as~~~~eIKkAYRkLa~~~HPDk~~~------------------~e~F~~I~~AYevLsdp~k   67 (174)
T 2pf4_E            9 ESLQLMDLLGLER---SAWGNIPLMRKAYLKKCKEFHPDKGGD------------------EEKMKKMNTLYKKMEDGVK   67 (174)
T ss_dssp             HHHHHHHTTTCCG---GGTTCHHHHHHHHHHHGGGCSCC---C------------------CTTTTHHHHHHHHHHHHHH
T ss_pred             ccccHHHHcCCCC---CCCcCHHHHHHHHHHHHHHHCcCCCCC------------------HHHHHHHHHHHHHhCCHHH
Confidence            4479999999999   888  6999999999999999999873                  3579999999999999999


Q ss_pred             hhhhcccCCC-C-CCCCC----CCCCCchHHhhhhhhcc
Q 006420          170 RRIYDSTDEF-D-DAIPA----DCAPQDFYKVFGPAFTR  202 (646)
Q Consensus       170 R~~YDs~~~~-~-~~~p~----~~~~~~Ff~~f~~~F~~  202 (646)
                      |+.||.+|.+ + +.++.    ......|+..|++.|..
T Consensus        68 R~~YD~~G~~w~~~~~~~~~~f~~~~~~f~~~w~~c~~~  106 (174)
T 2pf4_E           68 YAHQPDFGGFWDATEVFASSLNPGVDAIYCKQWPECVKK  106 (174)
T ss_dssp             HHTSCGGGGCC------CCSSCCCTTCCSCSSHHHHHSS
T ss_pred             HHHHhccCCcccccccchhhhccchHHHHHHhhhHHhcc
Confidence            9999998852 2 12222    12345677777777754

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=8.5e-16  Score=133.10  Aligned_cols=62  Identities=35%  Similarity=0.531  Sum_probs=56.1

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   .+|.++||+|||+|+++||||+++.               ..+.+.|+.|++||+||+||.+|+.
T Consensus        26 ~~~~y~iLgv~~---~as~~eIk~aYr~la~~~HPDk~~~---------------~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKP---GASRDEVNKAYRKLAVLLHPDKCVA---------------PGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCT---TCCHHHHHHHHHHHHHHHCTTTCCC---------------TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------ccHHHHHHHHHHHHHHHCCcccccC
Confidence            479999999999   9999999999999999999999974               2246789999999999999999875

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.56  E-value=2.8e-16  Score=166.52  Aligned_cols=70  Identities=37%  Similarity=0.584  Sum_probs=0.0

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      .+...|||+||||++   +||.++||+|||+|+++||||++++               ..+.+.|+.|++||+||+||.+
T Consensus        24 ~m~~~d~Y~vLgv~~---~as~~eIk~aYr~la~~~HPDk~~~---------------~~a~~~f~~i~~Ay~vL~d~~~   85 (329)
T 3lz8_A           24 AMELKDYYAILGVQP---TDDLKTIKTAYRRLARKYHPDVSKE---------------NDAEAKFKDLAEAWEVLKDEQR   85 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCHHHHcCcCC---CCCHHHHHHHHHHHHHHHCCCCCCC---------------hHHHHHHHHHHHHHHHhhhhhh
Confidence            345589999999999   9999999999999999999999874               2467899999999999999999


Q ss_pred             hhhhcccC
Q 006420          170 RRIYDSTD  177 (646)
Q Consensus       170 R~~YDs~~  177 (646)
                      |..||.++
T Consensus        86 R~~YD~~~   93 (329)
T 3lz8_A           86 RAEYDQLW   93 (329)
T ss_dssp             --------
T ss_pred             hcccchhh
Confidence            99999873

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.54  E-value=3.2e-15  Score=142.00  Aligned_cols=77  Identities=27%  Similarity=0.478  Sum_probs=65.6

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      .....|||+||||++   .++.++||+|||++++++|||++++....        .....+.+.|+.|++||+||+||.+
T Consensus         6 ~~~~~~~y~iLgv~~---~a~~~eIk~aYr~l~~~~HPDk~~~~~~~--------~~~~~a~~~f~~i~~Ay~~L~dp~~   74 (155)
T 2l6l_A            6 QMPKKDWYSILGADP---SANISDLKQKYQKLILMYHPDKQSTDVPA--------GTVEECVQKFIEIDQAWKILGNEET   74 (155)
T ss_dssp             CCCCSHHHHHHTCCT---TCCHHHHHHHHHHHHHHHSCCCCCCCCTT--------HHHHHHHHHHHHHHHHHHHSSSHHH
T ss_pred             cCCCCChhHhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCCCch--------hHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            455689999999999   99999999999999999999999863211        1134578899999999999999999


Q ss_pred             hhhhcccC
Q 006420          170 RRIYDSTD  177 (646)
Q Consensus       170 R~~YDs~~  177 (646)
                      |..||..+
T Consensus        75 R~~Yd~~~   82 (155)
T 2l6l_A           75 KREYDLQR   82 (155)
T ss_dssp             HCHHHHHH
T ss_pred             HHHHHHHc
Confidence            99999753

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.53  E-value=4.1e-15  Score=143.60  Aligned_cols=72  Identities=22%  Similarity=0.323  Sum_probs=62.3

Q ss_pred             ccccccccccccCCCC--CHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006420           94 QDHYALLGLSHLRYLA--TEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR  171 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~A--t~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~  171 (646)
                      +|||+||||++   .+  |..+||++||+++++||||++++.+.         .....+...|..|++||+||+||.+|.
T Consensus         1 ~d~y~lLgl~~---~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~---------~e~~~a~~~f~~In~AY~vL~dp~~R~   68 (171)
T 1fpo_A            1 MDYFTLFGLPA---RYQLDTQALSLRFQDLQRQYHPDKFASGSQ---------AEQLAAVQQSATINQAWQTLRHPLMRA   68 (171)
T ss_dssp             CHHHHHTTCCS---SSCCCHHHHHHHHHHHHHHTCGGGGTTSCH---------HHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCHHHHCCCCC---CCCCCHHHHHHHHHHHHHHhCcCCCCCCCH---------HHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            48999999998   77  99999999999999999999986321         113456789999999999999999999


Q ss_pred             hhcccC
Q 006420          172 IYDSTD  177 (646)
Q Consensus       172 ~YDs~~  177 (646)
                      .||...
T Consensus        69 ~Yd~~l   74 (171)
T 1fpo_A           69 EYLLSL   74 (171)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            999863

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.53  E-value=1.1e-14  Score=120.70  Aligned_cols=54  Identities=26%  Similarity=0.565  Sum_probs=50.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHh
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFR  640 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk  640 (646)
                      ...+||.+|+++|++||+.||.++++||++||++| |||.+||++||+.|+++|.
T Consensus         7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~   60 (72)
T 2cqq_A            7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVT   60 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcC
Confidence            34579999999999999999999999999999997 9999999999999999863

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.51  E-value=5.3e-15  Score=125.05  Aligned_cols=61  Identities=16%  Similarity=0.323  Sum_probs=55.4

Q ss_pred             cccccccccccccCCC--CCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420           93 QQDHYALLGLSHLRYL--ATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR  170 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~--At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR  170 (646)
                      ..++|+||||++   .  +|..+||+|||+|+++||||++++                  .+.|+.|++||++|+|+.+|
T Consensus        10 ~~~~y~iLgl~~---~~~a~~~eIk~aYr~la~~~HPDk~~~------------------~~~f~~i~~AYe~L~~~~~r   68 (79)
T 1faf_A           10 KERLLELLKLPR---QLWGDFGRMQQAYKQQSLLLHPDKGGS------------------HALMQELNSLWGTFKTEVYN   68 (79)
T ss_dssp             HHHHHHHHTCCS---SSTTCHHHHHHHHHHHHHHSSGGGSCC------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCC---CCCCCHHHHHHHHHHHHHHHCcCCCCC------------------HHHHHHHHHHHHHHhhHHHH
Confidence            368999999998   7  999999999999999999999763                  46899999999999999999


Q ss_pred             hhhc
Q 006420          171 RIYD  174 (646)
Q Consensus       171 ~~YD  174 (646)
                      ..++
T Consensus        69 ~~~~   72 (79)
T 1faf_A           69 LRMN   72 (79)
T ss_dssp             HTTC
T ss_pred             HHHh
Confidence            8854

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=99.50  E-value=1.6e-15  Score=124.11  Aligned_cols=47  Identities=32%  Similarity=0.511  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 006420          587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFA  633 (646)
Q Consensus       587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk  633 (646)
                      ..+||.+|+++||+||++||+++++||++||++|||||+.||+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999995

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.50  E-value=1.2e-14  Score=144.29  Aligned_cols=75  Identities=23%  Similarity=0.391  Sum_probs=63.1

Q ss_pred             ccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006420           92 NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR  171 (646)
Q Consensus        92 k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~  171 (646)
                      ...|||+||||++ .++++..+||++||+|+++||||++++.+.         .....+.+.|+.|++||+||+||.+|.
T Consensus        41 ~~~d~y~lLgv~~-~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~---------~e~~~a~~~f~~In~AY~vLsdp~~R~  110 (207)
T 3bvo_A           41 PTRDYFSLMDCNR-SFRVDTAKLQHRYQQLQRLVHPDFFSQRSQ---------TEKDFSEKHSTLVNDAYKTLLAPLSRG  110 (207)
T ss_dssp             TTCCHHHHTTSCS-CSCCCHHHHHHHHHHHHHHHCGGGGTTSCH---------HHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCCHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCCH---------HHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            3579999999997 345899999999999999999999985321         113456789999999999999999999


Q ss_pred             hhccc
Q 006420          172 IYDST  176 (646)
Q Consensus       172 ~YDs~  176 (646)
                      .||..
T Consensus       111 ~Yd~~  115 (207)
T 3bvo_A          111 LYLLK  115 (207)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99964

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.50  E-value=5.9e-15  Score=127.32  Aligned_cols=66  Identities=24%  Similarity=0.268  Sum_probs=58.2

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      .....++|+||||+.   +||.++||+|||+|+++||||++++.             .+.+.+.|+.|++||+||+|...
T Consensus        12 ~~~~~~~y~vLgv~~---~as~~eIKkaYrkla~~~HPDk~~~~-------------~~~a~~~F~~I~~AYevL~~~~~   75 (88)
T 1iur_A           12 GSILKEVTSVVEQAW---KLPESERKKIIRRLYLKWHPDKNPEN-------------HDIANEVFKHLQNEINRLEKQAF   75 (88)
T ss_dssp             SSCHHHHHHHHHHTT---SSCSHHHHHHHHHHHHHTCTTTSSSC-------------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHhCCCC---CCCHHHHHHHHHHHHHHHCCCCCCCc-------------hHHHHHHHHHHHHHHHHHHhhcc
Confidence            556689999999999   99999999999999999999998852             24568899999999999999877


Q ss_pred             hh
Q 006420          170 RR  171 (646)
Q Consensus       170 R~  171 (646)
                      |.
T Consensus        76 r~   77 (88)
T 1iur_A           76 LD   77 (88)
T ss_dssp             CS
T ss_pred             cc
Confidence            73

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.50  E-value=1.2e-14  Score=129.54  Aligned_cols=68  Identities=22%  Similarity=0.196  Sum_probs=55.8

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPV  168 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~  168 (646)
                      .|...|||.|||++.    ||.++||+|||+++++|||||+++.+.+.       .....+.+.|+.|++||+||+|+.
T Consensus        37 l~~~~d~Y~vl~~~~----As~~eIKkAYRklal~~HPDK~~~~~~~~-------e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           37 LWSGSGWKPVPLMDM----IEGNAVRKSYQRALLILHPDKLQQKGASA-------NQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             SCTTSCCCCCCGGGS----CSHHHHHHHHHHHHHHHCHHHHHHTTCCH-------HHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hcccCCHHHHcCCCC----CCHHHHHHHHHHHHHHHCcCcCCCcccch-------hhHHHHHHHHHHHHHHHHHHcCcc
Confidence            566789999999974    99999999999999999999998532110       113357889999999999999985

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.49  E-value=1.1e-14  Score=141.24  Aligned_cols=70  Identities=21%  Similarity=0.398  Sum_probs=61.2

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      .|...|||+||||+.   .||..+||+|||+++++|||||+++..           ....+.+.|+.|++||+||+||.+
T Consensus       113 l~~~~d~Y~vLgv~~---~As~~eIKkAYRklal~~HPDK~~~~~-----------~e~~A~~~F~~I~eAYevLsD~~k  178 (182)
T 1n4c_A          113 LWAGETKWKPVGMAD---LVTPEQVKKVYRKAVLVVHPDKATGQP-----------YEQYAKMIFMELNDAWSEFENQGQ  178 (182)
T ss_dssp             SCTTCCCCCCCCGGG---GSSHHHHHHHHHHHHHHTCGGGGSSCT-----------THHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hcCccchhhcCCCCC---CCCHHHHHHHHHHHHHHHCcCcCCCcc-----------hHHHHHHHHHHHHHHHHHHCCHHh
Confidence            455579999999999   999999999999999999999998521           112478899999999999999999


Q ss_pred             hhhh
Q 006420          170 RRIY  173 (646)
Q Consensus       170 R~~Y  173 (646)
                      |..|
T Consensus       179 R~~Y  182 (182)
T 1n4c_A          179 KPLY  182 (182)
T ss_dssp             SCCC
T ss_pred             hhhC
Confidence            9987

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.46  E-value=2.7e-14  Score=123.93  Aligned_cols=59  Identities=22%  Similarity=0.420  Sum_probs=51.5

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcc
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLID  166 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsD  166 (646)
                      .++|.+|||+.   .||..+||+|||+++++|||||+++..           ....+...|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~---~as~~eIKkAYRklal~~HPDK~~~~~-----------~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMAD---LVTPEQVKKVYRKAVLVVHPCKATGQP-----------YEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGG---SSSHHHHHHHHHHHHHHTCHHHHTTST-----------THHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCch-----------hHhHHHHHHHHHHHHHHHHHh
Confidence            57999999999   999999999999999999999998521           123468899999999999975

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.39  E-value=1.2e-13  Score=114.27  Aligned_cols=61  Identities=21%  Similarity=0.290  Sum_probs=52.2

Q ss_pred             CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420           91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR  170 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR  170 (646)
                      ....++|+||||++.  .+|.++||++||+|+++||||++++                  .+.|+.|++||++|+|+..|
T Consensus        11 m~~~~~y~iLgl~~~--~a~~~eIk~ayr~l~~~~HPDk~g~------------------~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           11 MNSKEALQILNLTEN--TLTKKKLKEVHRKIMLANHPDKGGS------------------PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             CCHHHHHHHTTCCTT--TCCHHHHHHHHHHHHHHHCGGGTCC------------------HHHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHHCCCCCCC------------------HHHHHHHHHHHHHHhhhhhc
Confidence            344699999999861  4999999999999999999999642                  35899999999999998776


Q ss_pred             h
Q 006420          171 R  171 (646)
Q Consensus       171 ~  171 (646)
                      +
T Consensus        71 k   71 (71)
T 2guz_A           71 K   71 (71)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.38  E-value=9e-14  Score=135.34  Aligned_cols=67  Identities=25%  Similarity=0.441  Sum_probs=59.2

Q ss_pred             Ccccccccccc------ccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHh
Q 006420           91 SNQQDHYALLG------LSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVL  164 (646)
Q Consensus        91 ~k~~d~Y~vLG------l~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiL  164 (646)
                      ....|||+|||      ++.  +++|..+||++||+++++||||++++                 +.+.|..|++||+||
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~--~~a~~~eIk~aYr~la~~~HPDk~~~-----------------a~~~f~~i~~AY~vL   68 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPI--WTIDQSRLRKEYRQLQAQHHPDMAQQ-----------------GSEQSSTLNQAYHTL   68 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCC--SCCCHHHHHHHHHHHHHTCCTTSCCS-----------------CSSGGGSHHHHHHHH
T ss_pred             CCCCCHHHHhccccccCCCC--CCCCHHHHHHHHHHHHHHhCcCCCcc-----------------HHHHHHHHHHHHHHH
Confidence            45679999994      554  68999999999999999999999973                 246799999999999


Q ss_pred             cchhhhhhhccc
Q 006420          165 IDPVKRRIYDST  176 (646)
Q Consensus       165 sDp~kR~~YDs~  176 (646)
                      +||.+|..||..
T Consensus        69 ~dp~~R~~Yd~~   80 (181)
T 3uo3_A           69 KDPLRRSQYMLK   80 (181)
T ss_dssp             HSHHHHHHHHHH
T ss_pred             cChHHHHHHHHH
Confidence            999999999985

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.32  E-value=1.5e-13  Score=160.41  Aligned_cols=72  Identities=39%  Similarity=0.662  Sum_probs=40.6

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      .....|||+||||++   +||.++||+|||+++++||||++++              ...+.+.|+.|++||++|+||.+
T Consensus        17 ~~~~~~~y~~lg~~~---~a~~~~i~~ay~~l~~~~hpd~~~~--------------~~~~~~~f~~i~~ay~~L~~~~~   79 (780)
T 3apo_A           17 GRHDQNFYSLLGVSK---TASSREIRQAFKKLALKLHPDKNPN--------------NPNAHGDFLKINRAYEVLKDEDL   79 (780)
T ss_dssp             ------CHHHHTCCT---TCCHHHHHHHHCC-------------------------------------CTHHHHHHSHHH
T ss_pred             CCCCCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------ChHHHHHHHHHHHHHHHHcChHH
Confidence            455689999999999   9999999999999999999999974              23467899999999999999999


Q ss_pred             hhhhcccCC
Q 006420          170 RRIYDSTDE  178 (646)
Q Consensus       170 R~~YDs~~~  178 (646)
                      |+.||.++.
T Consensus        80 r~~yd~~~~   88 (780)
T 3apo_A           80 RKKYDKYGE   88 (780)
T ss_dssp             HHHHTTC--
T ss_pred             HHHHHhhcc
Confidence            999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.8e-12  Score=108.31  Aligned_cols=61  Identities=25%  Similarity=0.465  Sum_probs=52.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCCCC--ChhHHHHHhhCCCCCHHHHHHHH-HHHHHHHhhh
Q 006420          582 SSSSDQDAWSAVQERALVQALKTFPKET--SQRWERVATAVPGKTVIQCKKKF-ASLKENFRSK  642 (646)
Q Consensus       582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~--~~rW~~IA~~Vpgrt~~~c~~Ry-k~l~~~vk~k  642 (646)
                      .|.....+||.+||.+|+++|..||.++  +.+|..||.+|||||..||++|| ++|..+++..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g   66 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG   66 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence            3445556899999999999999999754  38999999999999999999999 8888877654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.29  E-value=4.5e-12  Score=105.05  Aligned_cols=50  Identities=34%  Similarity=0.709  Sum_probs=46.6

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      ...+||.+|+++|++||++||.||++||++||.+|  |||++||+.+|+.+.
T Consensus         7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~   56 (72)
T 2cqq_A            7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLK   56 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999  599999999999863

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.28  E-value=3.8e-12  Score=116.99  Aligned_cols=46  Identities=15%  Similarity=0.616  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      ..+||++||.+|..++..||.   .+|..||..|||||..||+.||..+
T Consensus        27 k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~   72 (128)
T 1h8a_C           27 KGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHLKGRIGKQCRERWHNH   72 (128)
T ss_dssp             CSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhcCCcHHHHHHHHHHh
Confidence            357999999999999999984   4799999999999999999999753

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.23  E-value=1.1e-11  Score=102.60  Aligned_cols=50  Identities=24%  Similarity=0.456  Sum_probs=47.0

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV  508 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~  508 (646)
                      ...+||.+|+.+|.+||..||.+|++||+.||.+|| |||+.||+.+|+.+
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l   56 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMEN   56 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            346899999999999999999999999999999999 59999999999985

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.18  E-value=2.9e-11  Score=100.39  Aligned_cols=51  Identities=29%  Similarity=0.698  Sum_probs=47.7

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      ...+||.+|+.+|+.||+.||.++++||..||.+|| |||++||+.||+.++
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~   67 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLV   67 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            567899999999999999999999999999999998 699999999999863

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.14  E-value=6.5e-11  Score=94.68  Aligned_cols=50  Identities=30%  Similarity=0.506  Sum_probs=44.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          583 SSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       583 ~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      +.....+||++||.+|..++..|+.   .+|..||..|||||..||++||..+
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~r~~~~   53 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGF---GNWQDVANQMCTKTKEECEKHYMKY   53 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3455678999999999999999984   4799999999999999999999653

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=99.13  E-value=7.8e-12  Score=102.41  Aligned_cols=48  Identities=27%  Similarity=0.531  Sum_probs=43.1

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATK  506 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k  506 (646)
                      ...+||.+|+.+|++||.+||.||++||++||.+|| |||+.||+.+|.
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            356899999999999999999999999999999999 699999998874

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.11  E-value=8.8e-11  Score=101.95  Aligned_cols=51  Identities=27%  Similarity=0.604  Sum_probs=47.2

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      ..++||.+|+.+|+.||.+||.|+++||..||.+|| |||++||+.||+.++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            356899999999999999999999999999999998 699999999999864

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=7.7e-11  Score=97.10  Aligned_cols=48  Identities=25%  Similarity=0.416  Sum_probs=43.5

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      +.++||.+|+.+|.++|..|+.   .+|..||.+|+ +||.+||+.||.++|
T Consensus         8 k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L   55 (70)
T 2dim_A            8 KGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH-RKSAKQCKARWYEWL   55 (70)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST-TCCHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc-CCCHHHHHHHHHHHc
Confidence            5679999999999999999943   37999999998 799999999999875

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.06  E-value=2.5e-10  Score=91.11  Aligned_cols=51  Identities=25%  Similarity=0.544  Sum_probs=44.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      +|.....+||++||.+|..++..|+.   .+|..||..|||||..||++||..+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~   53 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHFPNRTDQQCQYRWLRV   53 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHccCCCHHHHHHHHHHH
Confidence            34556679999999999999999973   4799999999999999999999754

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=3.3e-10  Score=92.23  Aligned_cols=57  Identities=26%  Similarity=0.570  Sum_probs=49.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhh
Q 006420          582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKK  643 (646)
Q Consensus       582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~kK  643 (646)
                      .|.....+||.+||.+|..+++.||    .+|..||. +||||.+||++||..+......+.
T Consensus         4 ~P~~~k~~WT~eED~~L~~~~~~~g----~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            4 GSSGKKTEWSREEEEKLLHLAKLMP----TQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             SSSSSCCCCCHHHHHHHHHHHHHCT----TCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcC----CCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            3455667899999999999999997    38999999 899999999999998887776554

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.02  E-value=4.6e-10  Score=92.96  Aligned_cols=51  Identities=24%  Similarity=0.428  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 006420          582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLK  636 (646)
Q Consensus       582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~  636 (646)
                      +|.....+||.+|+.+|..++..||.    +|..||..|||||..||++||..+.
T Consensus         4 ~p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~Rt~~q~k~r~~~~l   54 (72)
T 2cu7_A            4 GSSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYF   54 (72)
T ss_dssp             CCSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            44556779999999999999999974    8999999999999999999997554

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.01  E-value=3.9e-10  Score=87.36  Aligned_cols=47  Identities=17%  Similarity=0.531  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 006420          587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLK  636 (646)
Q Consensus       587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~  636 (646)
                      ..+||++||.+|..++..||.   .+|..||..|||||..||++||..+.
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L   49 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLPNRTDVQCQHRWQKVL   49 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            358999999999999999974   37999999999999999999997654

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.01  E-value=2.1e-10  Score=96.74  Aligned_cols=46  Identities=24%  Similarity=0.531  Sum_probs=42.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      ...+||++|+.+|+.||.+||    .+|..||..|||||..||+.||..|
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYK----DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            346899999999999999998    5899999999999999999999866

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=98.99  E-value=8.6e-10  Score=87.56  Aligned_cols=46  Identities=24%  Similarity=0.505  Sum_probs=41.6

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCC-CCCHHHHHHHHHHH
Q 006420          587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVP-GKTVIQCKKKFASL  635 (646)
Q Consensus       587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vp-grt~~~c~~Ryk~l  635 (646)
                      ..+||++||.+|..++..|+.   .+|..||..|| |||..||+.||..+
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~~Rt~~qcr~r~~~~   55 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGL---GNWADIADYVGNARTKEECRDHYLKT   55 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            457999999999999999974   47999999999 99999999999753

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=98.95  E-value=8.4e-10  Score=85.51  Aligned_cols=46  Identities=17%  Similarity=0.615  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      ..+||++||.+|..++..||.   .+|..||..|||||..||++||...
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~   48 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHcCCCCHHHHHHHHHHH
Confidence            358999999999999999973   3699999999999999999999753

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=1.5e-09  Score=90.41  Aligned_cols=51  Identities=27%  Similarity=0.596  Sum_probs=45.8

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCC--CcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGT--SRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt--~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      ..++||.||+.+|.++|..|+.++  +.+|..||.+|+ +||..||+.||..+|
T Consensus         7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l   59 (75)
T 2yum_A            7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYF   59 (75)
T ss_dssp             CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            567999999999999999998765  379999999998 699999999998775

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=98.90  E-value=2e-09  Score=83.81  Aligned_cols=46  Identities=15%  Similarity=0.474  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCC--CCCHHHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVP--GKTVIQCKKKFASLK  636 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vp--grt~~~c~~Ryk~l~  636 (646)
                      .+||++||.+|..++..||.   ..|..||..+|  |||..||++||..|.
T Consensus         3 ~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~   50 (53)
T 1w0t_A            3 QAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (53)
T ss_dssp             CCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            47999999999999999974   47999999999  999999999998764

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=98.90  E-value=2.3e-09  Score=85.06  Aligned_cols=50  Identities=22%  Similarity=0.417  Sum_probs=43.8

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLL  510 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~  510 (646)
                      ..++||.+|+.+|..+|.+|+.   .+|..||.+||++||..||+.||.++++
T Consensus         8 ~~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~~Rt~~qcr~r~~~~~~   57 (58)
T 2elk_A            8 FDENWGADEELLLIDACETLGL---GNWADIADYVGNARTKEECRDHYLKTYI   57 (58)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence            3568999999999999999943   3799999999866999999999998753

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=2.8e-09  Score=87.66  Aligned_cols=51  Identities=25%  Similarity=0.552  Sum_probs=44.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      ++.....+||++||.+|..++..|+.   .+|..||..|||||.+||+.||...
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~   54 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARWYEW   54 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhcCCCHHHHHHHHHHH
Confidence            44556679999999999999999983   4799999999999999999999753

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.85  E-value=5.1e-09  Score=83.61  Aligned_cols=49  Identities=14%  Similarity=0.234  Sum_probs=43.9

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLL  510 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~  510 (646)
                      ...+||.+|+.+|.++|..|+.   .+|..||.+|+ +||..||+.||.++|+
T Consensus         7 ~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            7 GDPSWTAQEEMALLEAVMDCGF---GNWQDVANQMC-TKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHHT-TSCHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHhC-CCCHHHHHHHHHHHcc
Confidence            4578999999999999999943   37999999998 6999999999999874

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=98.85  E-value=3.9e-09  Score=85.45  Aligned_cols=48  Identities=13%  Similarity=0.493  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCC--CCCHHHHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVP--GKTVIQCKKKFASLK  636 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vp--grt~~~c~~Ryk~l~  636 (646)
                      ...+||++||.+|..++..|+.+   .|..||..+|  |||..||++||.-|.
T Consensus        10 kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~   59 (64)
T 3sjm_A           10 KKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMK   59 (64)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence            44689999999999999999843   6999999987  999999999998765

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=6.6e-09  Score=83.30  Aligned_cols=45  Identities=16%  Similarity=0.319  Sum_probs=40.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFAS  634 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~  634 (646)
                      ...+||++|+++|+.||..||+    +|.+||..|||||..||+.+|-.
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l~~rt~~~~v~~Yy~   55 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPK----NFGLIASYLERKSVPDCVLYYYL   55 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHCTTSCHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHHH
Confidence            3468999999999999999984    69999999999999999999853

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=98.84  E-value=3.5e-09  Score=81.92  Aligned_cols=47  Identities=28%  Similarity=0.502  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      .++||.+|+.+|..+|..|+.   .+|..||.+|+ |||..||..||.++|
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L   49 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLP-NRTDVQCQHRWQKVL   49 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence            478999999999999999943   37999999998 699999999999876

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=98.83  E-value=2.4e-09  Score=88.80  Aligned_cols=52  Identities=12%  Similarity=0.286  Sum_probs=46.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 006420          582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKEN  638 (646)
Q Consensus       582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~  638 (646)
                      .|.....+||++||.+|..+++.||    .+|..||..+ |||.++|++||..|...
T Consensus        18 dP~i~k~~wT~EED~~L~~l~~~~G----~kW~~IA~~l-gRt~~q~knRw~~L~~~   69 (73)
T 2llk_A           18 GDRNHVGKYTPEEIEKLKELRIKHG----NDWATIGAAL-GRSASSVKDRCRLMKDT   69 (73)
T ss_dssp             -CCCCCCSSCHHHHHHHHHHHHHHS----SCHHHHHHHH-TSCHHHHHHHHHHCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHC----CCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence            5677778999999999999999997    4699999999 99999999999987643

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=98.81  E-value=4.1e-09  Score=81.56  Aligned_cols=47  Identities=36%  Similarity=0.568  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      .++||.+|+.+|..+|..|+.   .+|..||.+|+ |||..||+.||.++|
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLK-GRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTST-TCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence            478999999999999999943   36999999998 699999999999875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.28  E-value=5.8e-10  Score=96.21  Aligned_cols=50  Identities=22%  Similarity=0.371  Sum_probs=44.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      ++.....+||.+|+.+|..++..||    .+|..||..|||||..||++||..+
T Consensus        11 ~p~~~~~~WT~eEd~~l~~~~~~~G----~~W~~IA~~l~gRt~~q~k~r~~~~   60 (89)
T 2ltp_A           11 RENLYFQGWTEEEMGTAKKGLLEHG----RNWSAIARMVGSKTVSQCKNFYFNY   60 (89)
Confidence            4556677999999999999999996    4799999999999999999999654

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=98.78  E-value=2.2e-08  Score=99.72  Aligned_cols=51  Identities=22%  Similarity=0.343  Sum_probs=43.5

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCC--CCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKG--TSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~g--t~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      ...+||.||+.+|..++.+||..  +..-|..||.+|+ |||.-+|..||..+|
T Consensus         7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L   59 (246)
T 1ign_A            7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYL   59 (246)
T ss_dssp             -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            35689999999999999999653  2223999999998 799999999999976

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=98.78  E-value=9.1e-09  Score=81.99  Aligned_cols=48  Identities=21%  Similarity=0.378  Sum_probs=43.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      ..++||.||+.+|..+|..|+.   .+|..||.+|+ +||..||+.||.++|
T Consensus         7 ~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l   54 (60)
T 2d9a_A            7 GKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHFP-NRTDQQCQYRWLRVL   54 (60)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHCS-SSCHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcc-CCCHHHHHHHHHHHc
Confidence            5679999999999999999942   36999999998 699999999999875

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=98.77  E-value=1.2e-08  Score=83.64  Aligned_cols=50  Identities=14%  Similarity=0.456  Sum_probs=44.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCC--CCCHHHHHHHHHHHH
Q 006420          584 SSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVP--GKTVIQCKKKFASLK  636 (646)
Q Consensus       584 ~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vp--grt~~~c~~Ryk~l~  636 (646)
                      .....+||++|+.+|..++..|+.   ..|..||..+|  |||..||++||..+.
T Consensus         7 ~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l   58 (69)
T 1ity_A            7 ARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK   58 (69)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence            345578999999999999999974   47999999999  999999999997664

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=98.69  E-value=2.2e-08  Score=77.88  Aligned_cols=48  Identities=25%  Similarity=0.348  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcC-CCCHHHHHHHHHHHh
Q 006420          459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGT-GRSVEEILKATKTVL  509 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~-~Rt~ke~~~~~k~~l  509 (646)
                      .++||+||+.+|..+|+.|+.   .+|..||.+|+. |||..||..||.+++
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~   50 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            468999999999999999943   379999999973 499999999999875

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=98.69  E-value=2.2e-08  Score=84.37  Aligned_cols=46  Identities=24%  Similarity=0.539  Sum_probs=42.0

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV  508 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~  508 (646)
                      ...+||.+|+.+|..+|++|+    .+|..||.+|| +||..||+.||..+
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYK----DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            467999999999999999995    58999999999 59999999999875

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=98.68  E-value=2.4e-08  Score=80.82  Aligned_cols=49  Identities=33%  Similarity=0.571  Sum_probs=42.8

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc-CCCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG-TGRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~-~~Rt~ke~~~~~k~~l  509 (646)
                      +.++||+||+.+|..+|++|+.|   .|..||.+++ .+||..||..||.+++
T Consensus        10 kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~   59 (64)
T 3sjm_A           10 KKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMK   59 (64)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999443   6999999975 3699999999999864

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.68  E-value=1.1e-08  Score=108.38  Aligned_cols=69  Identities=36%  Similarity=0.613  Sum_probs=56.2

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..++|.+||+..   .++..+|+++|+++++++|||+.+..           .....+...|+.|.+||++|+||.+|..
T Consensus       381 ~~~~y~~lg~~~---~~~~~~~~~~y~~~~l~~~pd~~~~~-----------~~~~~a~~~~~~i~~ay~~L~d~~~r~~  446 (450)
T 2y4t_A          381 KRDYYKILGVKR---NAKKQEIIKAYRKLALQWHPDNFQNE-----------EEKKKAEKKFIDIAAAKEVLSDPEMRKK  446 (450)
T ss_dssp             SCCSGGGSCSST---TCCTTHHHHHHHHHHHHSCGGGCCSH-----------HHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred             chhHHHHhCCCc---cCCHHHHHHHHHHHHHHhCCCCCCCc-----------hHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence            358999999998   88999999999999999999998742           0134578899999999999999999999


Q ss_pred             hcc
Q 006420          173 YDS  175 (646)
Q Consensus       173 YDs  175 (646)
                      ||.
T Consensus       447 yd~  449 (450)
T 2y4t_A          447 FDD  449 (450)
T ss_dssp             ---
T ss_pred             ccC
Confidence            997

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.65  E-value=4.3e-08  Score=81.08  Aligned_cols=48  Identities=33%  Similarity=0.666  Sum_probs=43.5

Q ss_pred             ccCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          457 KKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       457 ~~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      -..++||.||+.+|.++|..|  |.  +|..||.+|+ |||..||..+|..++
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~--G~--~W~~Ia~~~~-~Rt~~q~k~r~~~~l   54 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKF--GR--RWTKISKLIG-SRTVLQVKSYARQYF   54 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHT--CS--CHHHHHHHHS-SSCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHH--Cc--CHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            356899999999999999999  54  7999999998 699999999999875

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=98.59  E-value=6.6e-08  Score=79.24  Aligned_cols=49  Identities=29%  Similarity=0.409  Sum_probs=43.8

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcC-CCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGT-GRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~-~Rt~ke~~~~~k~~l  509 (646)
                      ..++||.+|+.+|..+|..|  |+ .+|..||.+|+. |||..||..||.++|
T Consensus         9 ~r~~WT~eED~~L~~~v~~~--G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l   58 (69)
T 1ity_A            9 KRQAWLWEEDKNLRSGVRKY--GE-GNWSKILLHYKFNNRTSVMLKDRWRTMK   58 (69)
T ss_dssp             SCCCCCHHHHHHHHHHHHHH--CS-SCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH--CC-CcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence            56899999999999999999  43 379999999974 699999999999986

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=9.7e-08  Score=77.52  Aligned_cols=46  Identities=33%  Similarity=0.490  Sum_probs=40.9

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      ..++||.||+.+|..++..|  |.  +|..||. +. |||..||+.||..+|
T Consensus         8 ~k~~WT~eED~~L~~~~~~~--g~--~W~~Ia~-~~-gRt~~qcr~Rw~~~l   53 (66)
T 2din_A            8 KKTEWSREEEEKLLHLAKLM--PT--QWRTIAP-II-GRTAAQCLEHYEFLL   53 (66)
T ss_dssp             SCCCCCHHHHHHHHHHHHHC--TT--CHHHHHH-HH-SSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHc--CC--CHHHHhc-cc-CcCHHHHHHHHHHHh
Confidence            56789999999999999999  43  7999999 54 599999999999876

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=98.54  E-value=7.6e-08  Score=85.06  Aligned_cols=45  Identities=16%  Similarity=0.626  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 006420          587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFAS  634 (646)
Q Consensus       587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~  634 (646)
                      ..+||++||.+|..++..||.   .+|..||..|||||..||+.||..
T Consensus         4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~   48 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHN   48 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhhcCCCHHHHHHHHHh
Confidence            358999999999999999984   479999999999999999999975

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=98.50  E-value=1.1e-07  Score=84.57  Aligned_cols=44  Identities=14%  Similarity=0.390  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFAS  634 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~  634 (646)
                      ..||++||.+|..++..||.   .+|..||..|||||..||+.||..
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~   45 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMITRNPRQCRERWNN   45 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcCCCCHHHHHHHHHH
Confidence            36999999999999999984   479999999999999999999975

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=98.44  E-value=2.3e-07  Score=78.76  Aligned_cols=46  Identities=26%  Similarity=0.454  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhHHHHHhh----CCCCCHHHHHHHHHHHHH
Q 006420          589 AWSAVQERALVQALKTFPKETSQRWERVATA----VPGKTVIQCKKKFASLKE  637 (646)
Q Consensus       589 ~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~----Vpgrt~~~c~~Ryk~l~~  637 (646)
                      +||.+|+.+|..++.+||.+   +|..|+..    +||||..+|++||.-|..
T Consensus         2 ~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~~RT~~~lKdrWrnllk   51 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence            79999999999999999864   79999985    899999999999988764

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=98.43  E-value=2.8e-07  Score=83.46  Aligned_cols=50  Identities=22%  Similarity=0.389  Sum_probs=43.7

Q ss_pred             ccCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc---CCCCHHHHHHHHHHHh
Q 006420          457 KKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG---TGRSVEEILKATKTVL  509 (646)
Q Consensus       457 ~~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~---~~Rt~ke~~~~~k~~l  509 (646)
                      ...++||.+|+..|+.+|++|+.|   +|..|+..++   .+||..+|..+|.+++
T Consensus        15 r~r~~WT~EEd~~L~~gV~k~G~G---~W~~Ia~~~~~~f~~RT~v~lKdRWrnll   67 (121)
T 2juh_A           15 RIRRPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLV   67 (121)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHGGG---CHHHHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence            357899999999999999999444   7999999962   3799999999999975

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.37  E-value=3.8e-07  Score=83.42  Aligned_cols=46  Identities=15%  Similarity=0.504  Sum_probs=41.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      ...+||++||.+|..++..||.    +|..||..|||||..||+.||...
T Consensus        10 kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~   55 (126)
T 3osg_A           10 KKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNY   55 (126)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhh
Confidence            4468999999999999999973    799999999999999999999764

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.36  E-value=8.1e-07  Score=71.56  Aligned_cols=48  Identities=19%  Similarity=0.366  Sum_probs=42.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHh-hCCCCCHHHHHHHHH
Q 006420          582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVAT-AVPGKTVIQCKKKFA  633 (646)
Q Consensus       582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~-~Vpgrt~~~c~~Ryk  633 (646)
                      .|......||++|.++|+.||..||++    |.+|+. .||+||..||+.-|-
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY   52 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFYY   52 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTTSCHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCcHHHHHHHHh
Confidence            344556789999999999999999875    999998 699999999998774

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=98.35  E-value=5.6e-07  Score=81.58  Aligned_cols=50  Identities=22%  Similarity=0.404  Sum_probs=43.5

Q ss_pred             ccCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc---CCCCHHHHHHHHHHHh
Q 006420          457 KKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG---TGRSVEEILKATKTVL  509 (646)
Q Consensus       457 ~~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~---~~Rt~ke~~~~~k~~l  509 (646)
                      ...++||.||+..|+.+|++|+.|   +|..|+..+.   .+||..+|..+|.+++
T Consensus        29 r~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnll   81 (122)
T 2roh_A           29 RIRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLV   81 (122)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence            357799999999999999999554   7999999752   3799999999999975

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.32  E-value=3.9e-07  Score=73.87  Aligned_cols=52  Identities=15%  Similarity=0.051  Sum_probs=44.4

Q ss_pred             cccccccccccCCC---CCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcch
Q 006420           95 DHYALLGLSHLRYL---ATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDP  167 (646)
Q Consensus        95 d~Y~vLGl~~~r~~---At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp  167 (646)
                      .-|.||||+.   .   ++.++|+++||+|...+|||+...                  .-.+..|+.|+++|...
T Consensus         5 EA~~ILgv~~---~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS------------------~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            5 ESCKILNIEE---SKGDLNMDKINNRFNYLFEVNDKEKGGS------------------FYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHTTCCG---GGTCCSHHHHHHHHHHHHHHTCGGGTCC------------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCC---CcCcCCHHHHHHHHHHHHHHhCCCCCCC------------------HHHHHHHHHHHHHHHHH
Confidence            4588999998   7   899999999999999999999753                  34677899999998643

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=98.30  E-value=2.5e-07  Score=85.19  Aligned_cols=45  Identities=16%  Similarity=0.474  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      ++||++||.+|..++..|+.   ..|..||..|||||..||..||...
T Consensus         3 g~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~   47 (131)
T 3zqc_A            3 GPFTEAEDDLIREYVKENGP---QNWPRITSFLPNRSPKQCRERWFNH   47 (131)
T ss_dssp             SSCCHHHHHHHHHHHHHHCS---CCGGGGTTSCTTSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHCCCCHHHHHHHHhhc
Confidence            47999999999999999984   4799999999999999999999543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.26  E-value=6.6e-07  Score=98.02  Aligned_cols=43  Identities=21%  Similarity=0.509  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 006420          587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFA  633 (646)
Q Consensus       587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk  633 (646)
                      ...||.+|..+|++||.+|++    .|..||..|++||..||+.+|.
T Consensus       380 ~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTKT~~Qvk~fy~  422 (482)
T 2xag_B          380 NARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNKSVVQVKNFFV  422 (482)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCCCHHHHHHHHH
Confidence            568999999999999999986    4999999999999999999984

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.24  E-value=2.1e-06  Score=70.60  Aligned_cols=44  Identities=18%  Similarity=0.391  Sum_probs=39.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHh-hCCCCCHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVAT-AVPGKTVIQCKKKFA  633 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~-~Vpgrt~~~c~~Ryk  633 (646)
                      ...+||++|.++|+.||..||++    |..|+. .||+||..||+.-|-
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCCHHHHHHHHH
Confidence            34589999999999999999875    999998 699999999998885

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=98.24  E-value=1.2e-06  Score=72.56  Aligned_cols=45  Identities=27%  Similarity=0.438  Sum_probs=40.5

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV  508 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~  508 (646)
                      ..++||+||+.+|.+++..|  |.  +|..||.+|  |||..+|..+|..+
T Consensus        22 ~k~~wT~EED~~L~~l~~~~--G~--kW~~IA~~l--gRt~~q~knRw~~L   66 (73)
T 2llk_A           22 HVGKYTPEEIEKLKELRIKH--GN--DWATIGAAL--GRSASSVKDRCRLM   66 (73)
T ss_dssp             CCCSSCHHHHHHHHHHHHHH--SS--CHHHHHHHH--TSCHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHH--CC--CHHHHHHHh--CCCHHHHHHHHHHH
Confidence            56799999999999999999  43  499999999  69999999999863

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=97.54  E-value=1.5e-07  Score=81.14  Aligned_cols=47  Identities=21%  Similarity=0.451  Sum_probs=42.9

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      ..++||.+|+.+|..+|..|  |.  +|..||.+|+ |||..+|..+|..+|
T Consensus        15 ~~~~WT~eEd~~l~~~~~~~--G~--~W~~IA~~l~-gRt~~q~k~r~~~~l   61 (89)
T 2ltp_A           15 YFQGWTEEEMGTAKKGLLEH--GR--NWSAIARMVG-SKTVSQCKNFYFNYK   61 (89)
Confidence            56799999999999999999  54  6999999998 699999999999875

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=98.22  E-value=1.7e-06  Score=76.61  Aligned_cols=51  Identities=25%  Similarity=0.402  Sum_probs=44.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC----CCCCHHHHHHHHHHHHH
Q 006420          584 SSDQDAWSAVQERALVQALKTFPKETSQRWERVATAV----PGKTVIQCKKKFASLKE  637 (646)
Q Consensus       584 ~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V----pgrt~~~c~~Ryk~l~~  637 (646)
                      .....+||.+|+.+|..++.+|+.+   +|..|+...    ||||..+|++||.-|..
T Consensus        10 rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnllk   64 (105)
T 2aje_A           10 RRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLVH   64 (105)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            4456799999999999999999864   799999876    89999999999988763

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.21  E-value=2.6e-06  Score=68.12  Aligned_cols=45  Identities=18%  Similarity=0.388  Sum_probs=40.2

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKT  507 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~  507 (646)
                      ...+||++|+.+|..++.+||    .+|..||.+|+ +||+.||+.+|-.
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~g----k~w~~Ia~~l~-~rt~~~~v~~Yy~   55 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHP----KNFGLIASYLE-RKSVPDCVLYYYL   55 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHST----TCHHHHHHHCT-TSCHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHcC-CCCHHHHHHHHHH
Confidence            567999999999999999995    36999999999 6999999998853

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=98.18  E-value=2e-06  Score=73.07  Aligned_cols=46  Identities=24%  Similarity=0.453  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhH----hcCCCCHHHHHHHHHHHh
Q 006420          460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEY----IGTGRSVEEILKATKTVL  509 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~----~~~~Rt~ke~~~~~k~~l  509 (646)
                      ++||.||+..|+.+|++|+.|   +|..|+..    ++ +||..+|..+|.+++
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~-~RT~~~lKdrWrnll   50 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNAD-HRTYVDLKDKWKTLV   50 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCT-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccC-CCCHHHHHHHHHHHH
Confidence            489999999999999999554   79999995    65 799999999999975

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.17  E-value=1.6e-06  Score=85.74  Aligned_cols=43  Identities=21%  Similarity=0.509  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 006420          587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFA  633 (646)
Q Consensus       587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk  633 (646)
                      ...||.+|..+|++||..|++    +|..||..|||||..||+++|.
T Consensus       133 s~~WTeEE~~lFleAl~kYGK----DW~~IAk~VgTKT~~QcKnfY~  175 (235)
T 2iw5_B          133 NARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNKSVVQVKNFFV  175 (235)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHSSCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999975    5999999999999999999985

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.13  E-value=5.3e-06  Score=86.27  Aligned_cols=139  Identities=14%  Similarity=0.329  Sum_probs=92.1

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhc----CC-----
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKR----KP-----  528 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~----k~-----  528 (646)
                      +-+.||..|...|++|+.+|  |- +.|+.||..|+ |+|..||...++ ++.+.-.-...++.++..-    ..     
T Consensus       109 GF~~W~rrdf~~Fi~a~~ky--Gr-~~~~~IA~ev~-~Kt~eEV~~Y~~-vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~  183 (304)
T 1ofc_X          109 GFTAWTKRDFNQFIKANEKY--GR-DDIDNIAKDVE-GKTPEEVIEYNA-VFWERCTELQDIERIMGQIERGEGKIQRRL  183 (304)
T ss_dssp             SCTTCCHHHHHHHHHHHHHH--CT-TCHHHHTTSST-TCCHHHHHHHHH-HHHHHGGGCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCHHHHHHHHHHHHHh--CH-HHHHHHHHHhc-CCCHHHHHHHHH-HHHHhHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999  44 46999999998 699999955443 3322211111222222110    00     


Q ss_pred             ---------cCccCCCCcchhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHH
Q 006420          529 ---------AQSIASPLTTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALV  599 (646)
Q Consensus       529 ---------~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le  599 (646)
                               +.....|.   .++.                                  .+  -+.....+||.+||+.|.
T Consensus       184 ~~~~~l~~Ki~~~~~P~---~~L~----------------------------------i~--y~~~k~k~yteeEDRfLL  224 (304)
T 1ofc_X          184 SIKKALDQKMSRYRAPF---HQLR----------------------------------LQ--YGNNKGKNYTEIEDRFLV  224 (304)
T ss_dssp             HHHHHHHHHHHTCSSHH---HHCC----------------------------------CC--CTTCCCSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcH---HHhc----------------------------------cc--cCCCCCCccCHHHHHHHH
Confidence                     00000010   0000                                  00  011144589999999999


Q ss_pred             HHHHhCCCCCChhHHHHHhh------------CCCCCHHHHHHHHHHHHHHHh
Q 006420          600 QALKTFPKETSQRWERVATA------------VPGKTVIQCKKKFASLKENFR  640 (646)
Q Consensus       600 ~al~~~p~~~~~rW~~IA~~------------Vpgrt~~~c~~Ryk~l~~~vk  640 (646)
                      -+|-.||-+.+..|+.|...            |-.||+.++..|...|..+|.
T Consensus       225 ~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ie  277 (304)
T 1ofc_X          225 CMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE  277 (304)
T ss_dssp             HHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999999877899999744            447999999999999998875

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=98.11  E-value=7.6e-06  Score=74.18  Aligned_cols=51  Identities=20%  Similarity=0.349  Sum_probs=44.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC----CCCCHHHHHHHHHHHHH
Q 006420          584 SSDQDAWSAVQERALVQALKTFPKETSQRWERVATAV----PGKTVIQCKKKFASLKE  637 (646)
Q Consensus       584 ~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V----pgrt~~~c~~Ryk~l~~  637 (646)
                      .....+||.+|+.+|..++.+||.+   +|..|+...    +|||..+|++||.-|..
T Consensus        28 rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnllk   82 (122)
T 2roh_A           28 RRIRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLVH   82 (122)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            3456799999999999999999864   799999864    99999999999988763

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=98.10  E-value=2.8e-06  Score=76.90  Aligned_cols=52  Identities=23%  Similarity=0.384  Sum_probs=45.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC----CCCCHHHHHHHHHHHHH
Q 006420          583 SSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAV----PGKTVIQCKKKFASLKE  637 (646)
Q Consensus       583 ~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V----pgrt~~~c~~Ryk~l~~  637 (646)
                      +.....+||.+|+.+|..++.+|+.+   +|..|+...    ||||..+|++||.-|..
T Consensus        13 ~rr~r~~WT~EEd~~L~~gV~k~G~G---~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk   68 (121)
T 2juh_A           13 QRRIRRPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVH   68 (121)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHHGGG---CHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            34456799999999999999999743   899999884    99999999999988775

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=98.05  E-value=3.2e-06  Score=84.30  Aligned_cols=50  Identities=12%  Similarity=0.374  Sum_probs=42.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCC-CCh-hHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKE-TSQ-RWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~-~~~-rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      ...+||++||..|..++.+||.. .+. .|..||.++||||.++|++||..+
T Consensus         7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~   58 (246)
T 1ign_A            7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVY   58 (246)
T ss_dssp             -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHH
Confidence            44589999999999999999852 122 299999999999999999999764

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.98  E-value=9.1e-06  Score=70.61  Aligned_cols=43  Identities=21%  Similarity=0.434  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFAS  634 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~  634 (646)
                      +.||++|..+|+.++..||++    |.+||..||+||..||...|-.
T Consensus        44 ~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           44 NMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             CCCCHHHHHHHHHHHHHSTTC----HHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCC----HHHHHHHcCCCCHHHHHHHHhc
Confidence            579999999999999999874    9999999999999999998853

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=97.95  E-value=1.7e-05  Score=63.13  Aligned_cols=47  Identities=15%  Similarity=0.362  Sum_probs=41.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH---hhCCCCCHHHHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVA---TAVPGKTVIQCKKKFASLK  636 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA---~~Vpgrt~~~c~~Ryk~l~  636 (646)
                      ...+||.||+..|..++++|+.    .|..|+   ..++|||..+.++||..|.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~RT~VdLKdk~r~L~   56 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKGRRAVDLAHKYHRLI   56 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccCcccchHHHHHHHHH
Confidence            3458999999999999999974    799999   4678999999999999885

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=97.90  E-value=1.2e-05  Score=71.17  Aligned_cols=50  Identities=24%  Similarity=0.411  Sum_probs=43.5

Q ss_pred             ccCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc---CCCCHHHHHHHHHHHh
Q 006420          457 KKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG---TGRSVEEILKATKTVL  509 (646)
Q Consensus       457 ~~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~---~~Rt~ke~~~~~k~~l  509 (646)
                      ...++||.||+..|+.+|++|+.|   +|..|+..++   .+||..+|..+|.+++
T Consensus        11 r~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnll   63 (105)
T 2aje_A           11 RIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLV   63 (105)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence            357899999999999999999554   7999999663   3799999999999975

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.89  E-value=9.1e-05  Score=62.89  Aligned_cols=59  Identities=12%  Similarity=0.287  Sum_probs=52.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhh
Q 006420          584 SSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKK  643 (646)
Q Consensus       584 ~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~kK  643 (646)
                      .....-||.++|+.|..+.+.-+.. ++.|..||..+.+||.+|+.+||..|..+|..-.
T Consensus        30 Ge~VvlWTRe~DR~IL~~cQ~~G~s-~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~   88 (95)
T 1ug2_A           30 GEKVVLWTREADRVILTMCQEQGAQ-PHTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC   88 (95)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTTSC-TTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEeccccCHHHHHHHHhcCCC-hhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Confidence            3455689999999999999998764 6899999999999999999999999999998644

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.02  E-value=2.6e-06  Score=68.49  Aligned_cols=54  Identities=19%  Similarity=0.311  Sum_probs=49.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhh
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKK  643 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~kK  643 (646)
                      .-||.++|+.|..+.+.-+.+ ++.|..||..+ |||++|+.+||..|+.+|...|
T Consensus        15 vlWTReeDR~IL~~cq~~G~s-~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~kSk   68 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPS-SKTFAYLAAKL-DKNPNQVSERFQQLMKLFEKSK   68 (70)
Confidence            469999999999999988765 58999999999 9999999999999999998766

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.42  E-value=0.00043  Score=73.58  Aligned_cols=142  Identities=15%  Similarity=0.282  Sum_probs=92.7

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhc-----------
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKR-----------  526 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~-----------  526 (646)
                      +-+.||.-|-..|++|+.+|  |- +.-+.||..|++|+|..||. +|-.+..+.-.-...++.++..-           
T Consensus       122 GF~~WnrrDF~~FI~a~~ky--GR-~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~  197 (374)
T 2y9y_A          122 GFTNWNKLEFRKFITVSGKY--GR-NSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVK  197 (374)
T ss_dssp             CCCCSCHHHHHHHHHHHHHH--CT-TCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHH
T ss_pred             hhcccCHHHHHHHHHHHHHh--CH-hHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999  54 46999999997679999997 55444333211111111111100           


Q ss_pred             -------CCcCccCCCCcchhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHH
Q 006420          527 -------KPAQSIASPLTTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALV  599 (646)
Q Consensus       527 -------k~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le  599 (646)
                             +.+.....|+   .++.                                  .+...+......||.+||+.|.
T Consensus       198 ~~~~~L~~Ki~~y~~P~---~~L~----------------------------------i~y~~~~~k~k~yteeEDRfLL  240 (374)
T 2y9y_A          198 MQQEALRRKLSEYKNPF---FDLK----------------------------------LKHPPSSNNKRTYSEEEDRFIL  240 (374)
T ss_dssp             HHHHHHHHHHTTCSSHH---HHCC----------------------------------CSSCCCCSSCCCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCH---HHce----------------------------------eccCCCCCCCCccCHHHHHHHH
Confidence                   0000000110   0000                                  0000111134579999999999


Q ss_pred             HHHHhCCCCCChhHHHHHhh------------CCCCCHHHHHHHHHHHHHHHh
Q 006420          600 QALKTFPKETSQRWERVATA------------VPGKTVIQCKKKFASLKENFR  640 (646)
Q Consensus       600 ~al~~~p~~~~~rW~~IA~~------------Vpgrt~~~c~~Ryk~l~~~vk  640 (646)
                      -+|-.||-+.+.-|++|-..            +-.||+.++.+|...|..+|.
T Consensus       241 ~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~Ie  293 (374)
T 2y9y_A          241 LMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLE  293 (374)
T ss_dssp             HHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999998777889999655            446999999999999998875

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=97.37  E-value=0.00023  Score=56.73  Aligned_cols=47  Identities=23%  Similarity=0.502  Sum_probs=41.0

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHh---HhcCCCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISE---YIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~---~~~~~Rt~ke~~~~~k~~l  509 (646)
                      ...+||.||+..|..+|.+|  |-  .|..|+.   |+. +||.-++-.+|.++.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~--G~--~W~~I~~~y~f~~-~RT~VdLKdk~r~L~   56 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTM--GN--HWNSILWSFPFQK-GRRAVDLAHKYHRLI   56 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHH--CS--CHHHHHHHSCCCT-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH--hH--hHHHHHHhCCCcc-CcccchHHHHHHHHH
Confidence            56799999999999999999  53  6999995   655 799999999999853

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=97.21  E-value=0.00032  Score=69.38  Aligned_cols=46  Identities=30%  Similarity=0.517  Sum_probs=41.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV  508 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~  508 (646)
                      ...+||.+|..+|.+|+.+|  |  ..|..||.+|| +||+.||...|...
T Consensus       132 ~s~~WTeEE~~lFleAl~kY--G--KDW~~IAk~Vg-TKT~~QcKnfY~~~  177 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKY--G--RDFQAISDVIG-NKSVVQVKNFFVNY  177 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHH--S--SCHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHH--C--cCHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            46789999999999999999  5  35999999999 59999999999865

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.16  E-value=0.0009  Score=57.73  Aligned_cols=52  Identities=15%  Similarity=0.344  Sum_probs=45.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC-----CCCCHHHHHHHHHHHHHHHhhhh
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAV-----PGKTVIQCKKKFASLKENFRSKK  643 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V-----pgrt~~~c~~Ryk~l~~~vk~kK  643 (646)
                      .+||.+|...|.+..+.|+    -||-.|+...     ++||..+.+.||..|...+...+
T Consensus        31 ~~WTkEETd~Lf~L~~~fd----lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTT----TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhC----CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            5899999999999999995    6999999888     68999999999998887665543

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.12  E-value=0.00076  Score=54.06  Aligned_cols=44  Identities=23%  Similarity=0.468  Sum_probs=38.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHh-HhcCCCCHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISE-YIGTGRSVEEILKATK  506 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~-~~~~~Rt~ke~~~~~k  506 (646)
                      ...+||++|..++..+|.+|+.    .|..|+. +|+ +||+.||+..|-
T Consensus         8 ~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v~-~Kt~~~~v~fYY   52 (63)
T 2yqk_A            8 IEKCWTEDEVKRFVKGLRQYGK----NFFRIRKELLP-NKETGELITFYY   52 (63)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTCS----CHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhCc----cHHHHHHHHcC-CCcHHHHHHHHh
Confidence            4568999999999999999954    4999998 688 599999998764

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.86  E-value=0.0019  Score=52.88  Aligned_cols=44  Identities=23%  Similarity=0.429  Sum_probs=38.5

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHh-HhcCCCCHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISE-YIGTGRSVEEILKATK  506 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~-~~~~~Rt~ke~~~~~k  506 (646)
                      ...+||++|..++..++.+|+.    .|..|+. +|+ +||+.||+..|-
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v~-~Kt~~~~v~fYY   51 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK----DFNDIRQDFLP-WKSLTSIIEYYY   51 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS----CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc----cHHHHHHHHcC-CCCHHHHHHHHH
Confidence            4568999999999999999944    3999999 798 599999998774

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.84  E-value=0.0076  Score=59.16  Aligned_cols=49  Identities=18%  Similarity=0.239  Sum_probs=36.4

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc-CCCCHHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG-TGRSVEEILKATKT  507 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~-~~Rt~ke~~~~~k~  507 (646)
                      ....||..|...|++++.+|+. ..+||+.|+.... .++|..+|..-+..
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~-~~~r~~~I~~da~L~~Ks~~~v~~y~~~   55 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGG-PLERLDAIARDAELVDKSETDLRRLGEL   55 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSS-GGGCHHHHHHHTTCTTSCHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCC-chhHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            4568999999999999999932 2469999998642 25898888754443

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.82  E-value=0.0015  Score=56.66  Aligned_cols=44  Identities=23%  Similarity=0.419  Sum_probs=38.9

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATK  506 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k  506 (646)
                      ....||.+|..++.+++..||.    .|..||.+|+ +||+.||+..|-
T Consensus        42 ~~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l~-~Kt~~~cV~~YY   85 (94)
T 4a69_C           42 VMNMWSEQEKETFREKFMQHPK----NFGLIASFLE-RKTVAECVLYYY   85 (94)
T ss_dssp             HTCCCCHHHHHHHHHHHHHSTT----CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC----CHHHHHHHcC-CCCHHHHHHHHh
Confidence            3568999999999999999965    4999999998 599999998764

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=96.63  E-value=0.0031  Score=54.40  Aligned_cols=47  Identities=23%  Similarity=0.405  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc----CCCCHHHHHHHHHHHh
Q 006420          459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG----TGRSVEEILKATKTVL  509 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~----~~Rt~ke~~~~~k~~l  509 (646)
                      ..+||.||...|..+|..|  |  -||-+|+..+.    .+||+.++..||..+.
T Consensus        30 ~~~WTkEETd~Lf~L~~~f--d--lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           30 DDAWTKAETDHLFDLSRRF--D--LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHT--T--TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHh--C--CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            3789999999999999999  4  38999999993    3699999999998763

>2lwx_A Zuotin; J-protein, molecular chaperone, pleiotropic drug resistance, chaperone; NMR {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.0031  Score=54.96  Aligned_cols=52  Identities=19%  Similarity=0.259  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhccccccccCC------ChhhHHHhhcCCCHHHHHHHHHHhhc
Q 006420          353 EKEKKLLRKERTRLRTLSASVTSQHLLDV------STEDVESLCMSFDMEQLRNLCDKMEK  407 (646)
Q Consensus       353 e~~Kk~lkKekk~lR~~~~~~~~~~~~~~------~~~dve~lc~~l~~e~L~~l~~~l~~  407 (646)
                      |+.|++++|.|+.||+.+++   .+||+.      .+.||++|+.+|+.++|..|..+|.+
T Consensus        20 eaak~a~kknKRvIR~svKD---anYFGda~~Aa~ID~DVdLIv~klddeeLa~lA~Kl~a   77 (108)
T 2lwx_A           20 QGSKAAKKKNKRAIRNSAKE---ADYFGDADKATTIDEQVGLIVDSLNDEELVSTADKIKA   77 (108)
T ss_dssp             -CCHHHHHHHHHHHHHHHHH---TCCTTCGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccch---hhhcccccHHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Confidence            45688999999999999985   566663      24789999999999999999999975

>4gmq_A Putative ribosome associated protein; ribosome binding, CO-translational chaperone, ribosome-bindi protein; 1.30A {Chaetomium thermophilum var}

Probab=96.14  E-value=0.005  Score=53.43  Aligned_cols=52  Identities=17%  Similarity=0.278  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHhhhhccccccccC----------CChhhHHHhhcCCCHHHHHHHHHHhhcc
Q 006420          354 KEKKLLRKERTRLRTLSASVTSQHLLD----------VSTEDVESLCMSFDMEQLRNLCDKMEKS  408 (646)
Q Consensus       354 ~~Kk~lkKekk~lR~~~~~~~~~~~~~----------~~~~dve~lc~~l~~e~L~~l~~~l~~~  408 (646)
                      +.|.++||+|+.||+..++   .+||.          .++.||++||.+|+.+||..|..+|++.
T Consensus         9 ~~~~~~KKnKR~Ir~svKD---anYF~~ga~~aa~ID~vL~dvdli~~kld~eeLa~lA~kl~~~   70 (103)
T 4gmq_A            9 AAKNAVKKNKRVLRGSVKE---ANYFVEGEASAATIDAVLNDVDLVITKIDADEIAALAGKLNGL   70 (103)
T ss_dssp             ---CHHHHHHHHHHHHHHH---TGGGSSSSCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhccccc---ccccCCCCCCHHHHHHHHhhHHHHHHhcCHHHHHHHHHHHhcc
Confidence            4678899999999999984   56775          1234899999999999999999999974

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=95.91  E-value=0.007  Score=66.42  Aligned_cols=45  Identities=29%  Similarity=0.501  Sum_probs=40.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKT  507 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~  507 (646)
                      ....||.+|..+|.++|.+|  |.  .|..||..||| ||+.||+..|..
T Consensus       379 ~~~~WT~eE~~~f~~al~~y--Gk--dw~~IA~~VgT-KT~~Qvk~fy~~  423 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKY--GR--DFQAISDVIGN-KSVVQVKNFFVN  423 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHH--TT--CHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHH--Cc--CHHHHHHHhCC-CCHHHHHHHHHH
Confidence            45789999999999999999  53  59999999995 999999998865

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=95.91  E-value=0.014  Score=46.11  Aligned_cols=46  Identities=11%  Similarity=0.271  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCC-----CCChhHHHHHh-hCCCCCHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPK-----ETSQRWERVAT-AVPGKTVIQCKKKFA  633 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~-----~~~~rW~~IA~-~Vpgrt~~~c~~Ryk  633 (646)
                      .++|.+||.+|..-|..|..     +...-|..|+. .+|+.|-..|+.||.
T Consensus         3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~   54 (59)
T 1fex_A            3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYL   54 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHH
Confidence            47999999999999999932     24588999999 899999999999995

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=95.57  E-value=0.013  Score=60.86  Aligned_cols=49  Identities=20%  Similarity=0.292  Sum_probs=44.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENF  639 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~v  639 (646)
                      ..||..+-..|+.|+.+||.   +.|+.||+.|+|||..++..-|+.+.+.+
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr---~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGR---DDIDNIAKDVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCT---TCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred             cccCHHHHHHHHHHHHHhCH---HHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence            46999999999999999986   47999999999999999988888888766

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=95.50  E-value=0.017  Score=48.80  Aligned_cols=57  Identities=19%  Similarity=0.507  Sum_probs=46.0

Q ss_pred             CCCCHHHHHHHHHHHHhCC------CCCChhHHHHHhhCC----CCCHHHHHHHHHHHHHHHhhhhc
Q 006420          588 DAWSAVQERALVQALKTFP------KETSQRWERVATAVP----GKTVIQCKKKFASLKENFRSKKS  644 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p------~~~~~rW~~IA~~Vp----grt~~~c~~Ryk~l~~~vk~kK~  644 (646)
                      ..||.+|..+|..+....-      ......|+.||..+-    .||..||..+|+-|...++.-|.
T Consensus         5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~   71 (86)
T 2ebi_A            5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH   71 (86)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999987531      123468999997653    69999999999999999886553

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=95.44  E-value=0.013  Score=49.46  Aligned_cols=51  Identities=22%  Similarity=0.354  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHh----CCCC--CCcchhHHHhHh---cCCCCHHHHHHHHHHHh
Q 006420          459 EKPWSKEEIELLRKGMQK----YPKG--TSRRWEVISEYI---GTGRSVEEILKATKTVL  509 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~----~p~g--t~~RW~~IA~~~---~~~Rt~ke~~~~~k~~l  509 (646)
                      ...||.+|..+|+.+...    |..|  ....|+.||..|   |-.||++||..+|+++.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            467999999999999753    3222  224799999998   56799999999999864

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=95.40  E-value=0.062  Score=45.73  Aligned_cols=50  Identities=18%  Similarity=0.323  Sum_probs=43.6

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      .--.||.|+|..+..+++.-.+ +++.|..||..+| +||..||-.|+.++.
T Consensus        32 ~VvlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm   81 (95)
T 1ug2_A           32 KVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             EEEEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence            3457999999999999999844 4688999999998 599999999999873

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=94.67  E-value=0.054  Score=42.71  Aligned_cols=49  Identities=6%  Similarity=0.119  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCC-----CCCcchhHHHh-HhcCCCCHHHHHHHHHHHh
Q 006420          460 KPWSKEEIELLRKGMQKYPK-----GTSRRWEVISE-YIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~-----gt~~RW~~IA~-~~~~~Rt~ke~~~~~k~~l  509 (646)
                      .++|.+|+..|...|..|..     +++.-|..+|+ .++ ++|-..|+.||...|
T Consensus         3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHc
Confidence            58999999999999999922     24568999999 675 799999999998754

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=93.66  E-value=0.12  Score=44.30  Aligned_cols=47  Identities=23%  Similarity=0.405  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc----CCCCHHHHHHHHHHHh
Q 006420          459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG----TGRSVEEILKATKTVL  509 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~----~~Rt~ke~~~~~k~~l  509 (646)
                      ...||.+|...|-.+|..|  +  -||-+|+....    .+||++++..||-.+.
T Consensus        30 ~~~WT~eETd~LfdLc~~f--d--lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           30 DDAWTKAETDHLFDLSRRF--D--LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHT--T--TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHc--C--CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            3579999999999999999  2  38999999874    3699999999998763

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=93.54  E-value=0.2  Score=43.05  Aligned_cols=50  Identities=16%  Similarity=0.351  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC-----CCCCHHHHHHHHHHHHHHHhh
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAV-----PGKTVIQCKKKFASLKENFRS  641 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V-----pgrt~~~c~~Ryk~l~~~vk~  641 (646)
                      ..||.+|-..|....+.|.    -||--|+..-     ++||.++.+.||-.+...+.+
T Consensus        31 ~~WT~eETd~LfdLc~~fd----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~   85 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTT----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcC----CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4699999999999999995    6999999765     379999999999877665443

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=92.60  E-value=0.013  Score=47.16  Aligned_cols=47  Identities=9%  Similarity=0.271  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      -.||.|||..+..+++.-++ ++..|..||..+  +||+.||..|+.+++
T Consensus        15 vlWTReeDR~IL~~cq~~G~-s~~tfa~iA~~L--nks~~QV~~RF~~Lm   61 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGP-SSKTFAYLAAKL--DKNPNQVSERFQQLM   61 (70)
Confidence            46999999999999998844 367899999999  599999999999863

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=91.58  E-value=0.27  Score=48.00  Aligned_cols=52  Identities=13%  Similarity=0.240  Sum_probs=41.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHh--hCCCCCHHHHHHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVAT--AVPGKTVIQCKKKFASLKEN  638 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~--~Vpgrt~~~c~~Ryk~l~~~  638 (646)
                      ...+||..|...|..|+.+||.. .+||+.|+.  .+++||..++..=|..+.+.
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            44689999999999999999832 479999985  47899999998766666654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=89.03  E-value=1.6  Score=34.82  Aligned_cols=52  Identities=8%  Similarity=0.121  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHh--hCCCCCHHHHHHHHHHHHHHH
Q 006420          587 QDAWSAVQERALVQALKTFPKETSQRWERVAT--AVPGKTVIQCKKKFASLKENF  639 (646)
Q Consensus       587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~--~Vpgrt~~~c~~Ryk~l~~~v  639 (646)
                      .-.||+|.+..|..|+..+|. ..--|..|..  .|||.|..++.-|.+.-+-.+
T Consensus         7 r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l   60 (64)
T 1irz_A            7 RVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            347999999999999999983 2345888975  478999999999876655444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	646
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	4e-12
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	2e-11
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	2e-10
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	2e-10
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	5e-10
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-08
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	5e-08
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	6e-08
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	6e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	4e-07
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-05
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	3e-05
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	9e-05
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-04
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	0.002

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (146), Expect = 4e-12
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           +D Y++LG       A    +++ Y++  L YHPDKQ+A + A           +E    
Sbjct: 16  KDWYSILGADPS---ANMSDLKQKYQKLILLYHPDKQSADVPAGT--------MEECMQK 64

Query: 154 FKAVQEAYEVLIDPVKRRIYD 174
           F  + +A+++L +   ++ YD
Sbjct: 65  FIEIDQAWKILGNEETKKKYD 85

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 58.1 bits (140), Expect = 2e-11
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 95  DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHF 154
           D++ L GL   RY      +   +++   +YHPDK A+   AE         +       
Sbjct: 2   DYFTLFGLPA-RYQLDTQALSLRFQDLQRQYHPDKFASGSQAE---------QLAAVQQS 51

Query: 155 KAVQEAYEVLIDPVKRRIYD 174
             + +A++ L  P+ R  Y 
Sbjct: 52  ATINQAWQTLRHPLMRAEYL 71

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 14/80 (17%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           +  +  +G++ L    T +Q++K YR+  L  HPDK              Q  +   +  
Sbjct: 33  ETKWKPVGMADL---VTPEQVKKVYRKAVLVVHPDKATG-----------QPYEQYAKMI 78

Query: 154 FKAVQEAYEVLIDPVKRRIY 173
           F  + +A+    +  ++ +Y
Sbjct: 79  FMELNDAWSEFENQGQKPLY 98

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 590 WSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKS 644
           W+      L +++  FP  T  RWE++A  + G++V     K   LK++      
Sbjct: 4   WTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPG 57

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 5e-10
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 462 WSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV 508
           W++E++  L + M K+P GT  RWE I+  +  GRSV ++    K +
Sbjct: 4   WTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQL 48

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 20/130 (15%)

Query: 91  SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEI 150
                   LLGL           +RK+Y +   ++HPDK                     
Sbjct: 5   EESLQLMDLLGLER-SAWGNIPLMRKAYLKKCKEFHPDKG------------------GD 45

Query: 151 ETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPADCAPQDFYKVFGPAFTRNGRWSANQ 210
           E   K +   Y+ + D VK         F DA        D ++ +  AF     +  ++
Sbjct: 46  EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFC-SE 104

Query: 211 LVPSLGDENT 220
            +PS  DE T
Sbjct: 105 EMPSSDDEAT 114

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 5e-08
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 18/85 (21%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           +D+Y  LGL+     A++++I+++YR  AL+YHPDK       E                
Sbjct: 3   KDYYQTLGLARG---ASDEEIKRAYRRQALRYHPDKNKEPGAEE---------------K 44

Query: 154 FKAVQEAYEVLIDPVKRRIYDSTDE 178
           FK + EAY+VL DP KR I+D   E
Sbjct: 45  FKEIAEAYDVLSDPRKREIFDRYGE 69

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 48.1 bits (114), Expect = 6e-08
 Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 19/82 (23%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           +    LL L   +      +++++Y++ +L  HPDK  +                     
Sbjct: 11  ERLLELLKLPR-QLWGDFGRMQQAYKQQSLLLHPDKGGS------------------HAL 51

Query: 154 FKAVQEAYEVLIDPVKRRIYDS 175
            + +   +      V     + 
Sbjct: 52  MQELNSLWGTFKTEVYNLRMNL 73

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 48.1 bits (114), Expect = 6e-08
 Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 17/81 (20%)

Query: 94  QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETH 153
           QD+Y +LG+S     A E +IRK+Y+  A+KYHPD+                   E E  
Sbjct: 3   QDYYEILGVSKT---AEEREIRKAYKRLAMKYHPDRNQG--------------DKEAEAK 45

Query: 154 FKAVQEAYEVLIDPVKRRIYD 174
           FK ++EAYEVL D  KR  YD
Sbjct: 46  FKEIKEAYEVLTDSQKRAAYD 66

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 45.3 bits (107), Expect = 4e-07
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 590 WSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKS 644
           WSA + +A  +AL  + K+T  RW  VA AV G+T  + KK +  L E+ +  +S
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 58

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEI 501
           +PWS +E +   + +  Y K T  RW  ++  +  GR+ EE+
Sbjct: 2   RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEV 42

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 19/89 (21%)

Query: 90  GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDE 149
           GS  ++  +++  +   +   E + +K  R   LK+HPDK                  D 
Sbjct: 12  GSILKEVTSVVEQA---WKLPESERKKIIRRLYLKWHPDKN-------------PENHDI 55

Query: 150 IETHFKAVQEAYEVLIDPVKRRIYDSTDE 178
               FK +Q     L    K+   D   +
Sbjct: 56  ANEVFKHLQNEINRLE---KQAFLDQNAD 81

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 9e-05
 Identities = 15/54 (27%), Positives = 31/54 (57%)

Query: 582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635
            + S ++ W+  Q++ L  AL+ +P+ +S  W+++A  VP K+   C  ++  L
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 60

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 448 GSTLLKSFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEI 501
           GS   +     E+PW++ + +LL   +Q+YP+G+S  W+ I+  +   +S E+ 
Sbjct: 1   GSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDC 53

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSK 642
           + WS  ++    +     PK     +  +A+ +  KTV +C   +   K+N   K
Sbjct: 18  NMWSEQEKETFREKFMQHPK----NFGLIASFLERKTVAECVLYYYLTKKNENYK 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	646
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.77
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.74
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.69
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.6
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.57
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.55
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.55
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.53
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.48
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.45
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.42
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.24
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.18
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.07
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.04
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.97
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.91
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.86
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	98.84
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.82
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.82
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	98.82
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	98.81
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	98.79
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.73
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.71
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.7
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	98.67
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	98.65
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	98.61
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	98.5
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	98.41
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	98.4
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.36
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	98.32
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.13
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.1
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	97.94
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	97.76
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	97.73
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.13
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.26
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	93.3
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	89.2
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	86.96

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=9.4e-20  Score=150.80  Aligned_cols=69  Identities=48%  Similarity=0.795  Sum_probs=62.9

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      +|||+||||++   +||.++||+|||+++++||||++++              ...+...|..|++||+||+||.+|..|
T Consensus         3 ~dyY~vLgv~~---~As~~eIk~aYr~l~~~~HPDk~~~--------------~~~~~~~f~~i~~Ay~vL~d~~~R~~Y   65 (75)
T d1xbla_           3 QDYYEILGVSK---TAEEREIRKAYKRLAMKYHPDRNQG--------------DKEAEAKFKEIKEAYEVLTDSQKRAAY   65 (75)
T ss_dssp             CCTTTTTCCSS---SCCHHHHHHHHHHHHHHTCCTTCTT--------------TCHHHHHHHHHHHHHHHTTSSHHHHHH
T ss_pred             CCHHHHcCCCC---CcCHHHHHHHHHHHHhhhhhhccCC--------------ChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            69999999999   9999999999999999999999885              234577899999999999999999999


Q ss_pred             cccCCC
Q 006420          174 DSTDEF  179 (646)
Q Consensus       174 Ds~~~~  179 (646)
                      |.+|..
T Consensus        66 D~~g~~   71 (75)
T d1xbla_          66 DQYGHA   71 (75)
T ss_dssp             HHHTTS
T ss_pred             HHhCcc
Confidence            998753

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.74  E-value=2.9e-19  Score=159.49  Aligned_cols=69  Identities=30%  Similarity=0.398  Sum_probs=61.2

Q ss_pred             cccccccccccccCCCC--CHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420           93 QQDHYALLGLSHLRYLA--TEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR  170 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~A--t~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR  170 (646)
                      ..|||+||||+.   +|  +.++||+|||+|||+|||||+++                  .+.|+.|++||+||+||.+|
T Consensus         7 ~~~ly~iLGv~~---~a~~~~~~IKkAYrkla~k~HPDk~~~------------------~e~F~~I~~AY~vLsd~~kR   65 (114)
T d1gh6a_           7 SLQLMDLLGLER---SAWGNIPLMRKAYLKKCKEFHPDKGGD------------------EEKMKKMNTLYKKMEDGVKY   65 (114)
T ss_dssp             HHHHHHHTTCCT---TSCSCHHHHHHHHHHTTTTCCTTTCCT------------------TTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCC---CCCCCHHHHHHHHHHHHHHhcccchhh------------------HHHHHHHHHHHHHhCCHHHH
Confidence            468999999999   88  78899999999999999999874                  34799999999999999999


Q ss_pred             hhhcccCCCCCC
Q 006420          171 RIYDSTDEFDDA  182 (646)
Q Consensus       171 ~~YDs~~~~~~~  182 (646)
                      ..||.++.....
T Consensus        66 ~~YD~~~~~~~~   77 (114)
T d1gh6a_          66 AHQPDFGGFWDA   77 (114)
T ss_dssp             CCSSCCSCCCCC
T ss_pred             HHHhccCCCCcc
Confidence            999987665443

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.6e-18  Score=141.85  Aligned_cols=68  Identities=46%  Similarity=0.810  Sum_probs=62.0

Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420           93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI  172 (646)
Q Consensus        93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~  172 (646)
                      ..|||+||||++   .||.++|++||+++++++|||++..               ..+.+.|..|++||+||+||.+|..
T Consensus         2 ~kdyY~iLgv~~---~as~~eIk~ay~~l~~~~hPD~~~~---------------~~~~~~~~~i~~Ay~vLsdp~~R~~   63 (77)
T d1hdja_           2 GKDYYQTLGLAR---GASDEEIKRAYRRQALRYHPDKNKE---------------PGAEEKFKEIAEAYDVLSDPRKREI   63 (77)
T ss_dssp             CCCSHHHHTCCT---TCCHHHHHHHHHHHHHTTCTTTCCC---------------TTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCChHHHcCCCC---CcCHHHHHHHHHHHHHHhccccccc---------------hhHHHHHHHHHHHHHHhcCHHHHHH
Confidence            368999999999   9999999999999999999999874               2356789999999999999999999


Q ss_pred             hcccCC
Q 006420          173 YDSTDE  178 (646)
Q Consensus       173 YDs~~~  178 (646)
                      ||.++.
T Consensus        64 YD~~g~   69 (77)
T d1hdja_          64 FDRYGE   69 (77)
T ss_dssp             HHHTCG
T ss_pred             HHhhhh
Confidence            999765

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=6.4e-18  Score=145.60  Aligned_cols=77  Identities=27%  Similarity=0.484  Sum_probs=65.3

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      .....|||+||||++   +||.++||+||++|+++||||++.+....        .....+.+.|++|++||+||+||.+
T Consensus        12 ~~~~~d~Y~iLgv~~---~as~~eIk~aY~~l~~~~HPDk~~~~~~~--------~~~~~a~~~f~~I~~Ay~vL~d~~~   80 (94)
T d1wjza_          12 QTLKKDWYSILGADP---SANMSDLKQKYQKLILLYHPDKQSADVPA--------GTMEECMQKFIEIDQAWKILGNEET   80 (94)
T ss_dssp             SSSCSCHHHHTTCCT---TCCHHHHHHHHHHTTSSSCSTTCCTTCCH--------HHHHHHHHHHHHHHHHHHHHSSSSH
T ss_pred             hhhccChHHHcCCCC---CcCHHHHHHHHHHHHHHhhhhhccccchH--------HHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            344579999999999   99999999999999999999998753211        1245678899999999999999999


Q ss_pred             hhhhcccC
Q 006420          170 RRIYDSTD  177 (646)
Q Consensus       170 R~~YDs~~  177 (646)
                      |+.||...
T Consensus        81 R~~YD~~~   88 (94)
T d1wjza_          81 KKKYDLQR   88 (94)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHcc
Confidence            99999753

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=2.9e-16  Score=129.79  Aligned_cols=73  Identities=25%  Similarity=0.401  Sum_probs=61.3

Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420           94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY  173 (646)
Q Consensus        94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y  173 (646)
                      .|||+||||+. .++++.++|+++||++++.||||+..+.+..         ....+...|..|++||+||+||.+|..|
T Consensus         1 lnyy~lLgl~~-~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~---------~~~~a~~~~~~i~~Ay~vL~dp~~R~~Y   70 (76)
T d1fpoa1           1 MDYFTLFGLPA-RYQLDTQALSLRFQDLQRQYHPDKFASGSQA---------EQLAAVQQSATINQAWQTLRHPLMRAEY   70 (76)
T ss_dssp             CHHHHHTTCCS-SSCCCHHHHHHHHHHHHHHTCGGGGTTSCHH---------HHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             CChHHHCCCCC-CCCCCHHHHHHHHHHHHHHhCccccccchHH---------HHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            48999999987 4456799999999999999999998753211         1445788999999999999999999999


Q ss_pred             ccc
Q 006420          174 DST  176 (646)
Q Consensus       174 Ds~  176 (646)
                      +-.
T Consensus        71 ll~   73 (76)
T d1fpoa1          71 LLS   73 (76)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.4e-16  Score=119.82  Aligned_cols=53  Identities=26%  Similarity=0.582  Sum_probs=50.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhhh
Q 006420          589 AWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSK  642 (646)
Q Consensus       589 ~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~k  642 (646)
                      .||.+|+++|++||.+||.++++||++||.+| |||.+||+.||++|+++|-..
T Consensus         3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~~~~~   55 (59)
T d2cqqa1           3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCS   55 (59)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCC
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHhcccC
Confidence            69999999999999999999999999999999 999999999999999988544

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.55  E-value=6.6e-16  Score=128.42  Aligned_cols=66  Identities=15%  Similarity=0.291  Sum_probs=59.2

Q ss_pred             CccccccccccccccCCCC--CHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchh
Q 006420           91 SNQQDHYALLGLSHLRYLA--TEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPV  168 (646)
Q Consensus        91 ~k~~d~Y~vLGl~~~r~~A--t~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~  168 (646)
                      ....+||+||||++   .+  |..+||+|||+++++||||++++                  .+.|+.|++||++|+|+.
T Consensus         8 ~~~~~~y~iLgl~~---~~~~~~~~IkkaYr~l~~~~HPDk~g~------------------~e~~~~in~Ay~~L~d~~   66 (79)
T d1fafa_           8 ADKERLLELLKLPR---QLWGDFGRMQQAYKQQSLLLHPDKGGS------------------HALMQELNSLWGTFKTEV   66 (79)
T ss_dssp             HHHHHHHHHHTCCS---SSTTCHHHHHHHHHHHHHHSSGGGSCC------------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCC---CCCCCHHHHHHHHHHHHHHhCcccCCC------------------HHHHHHHHHHHHHHCCHH
Confidence            34578999999998   76  99999999999999999999863                  357999999999999999


Q ss_pred             hhhhhcccC
Q 006420          169 KRRIYDSTD  177 (646)
Q Consensus       169 kR~~YDs~~  177 (646)
                      +|..||..+
T Consensus        67 ~r~~~~~~~   75 (79)
T d1fafa_          67 YNLRMNLGG   75 (79)
T ss_dssp             HHHTTCCSS
T ss_pred             HHHHHccCC
Confidence            999999864

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.55  E-value=4.2e-15  Score=118.40  Aligned_cols=56  Identities=36%  Similarity=0.625  Sum_probs=52.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhh
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKK  643 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~kK  643 (646)
                      .+||++||.+|+.||+.||.+.+++|.+||..|||||..||++||+.|+++|+.-.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik~ie   57 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIE   57 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccc
Confidence            47999999999999999999988999999999999999999999999999998644

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=1.8e-15  Score=130.99  Aligned_cols=70  Identities=21%  Similarity=0.398  Sum_probs=61.2

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      -|...++|.+|||+.   .+|.++||+|||++++.||||++++..           ....+...|+.|++||++|+||.+
T Consensus        29 l~~~~~~y~~Lgl~~---~~t~~eIk~aYr~l~~~~HPDk~~~~~-----------~~~~a~~~f~~I~~Ay~~L~d~~~   94 (98)
T d1nz6a_          29 LWAGETKWKPVGMAD---LVTPEQVKKVYRKAVLVVHPDKATGQP-----------YEQYAKMIFMELNDAWSEFENQGQ   94 (98)
T ss_dssp             SCTTCCSCCCCCGGG---CCSHHHHHHHHHHHHHHSCHHHHTTST-----------THHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCcccCCeecCCCc---cCCHHHHHHHHHHHHHHhccccCCChH-----------HHHHHHHHHHHHHHHHHHHCCHHH
Confidence            355678899999999   899999999999999999999988532           134578899999999999999999


Q ss_pred             hhhh
Q 006420          170 RRIY  173 (646)
Q Consensus       170 R~~Y  173 (646)
                      |..|
T Consensus        95 R~~Y   98 (98)
T d1nz6a_          95 KPLY   98 (98)
T ss_dssp             CCCC
T ss_pred             HhcC
Confidence            9988

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.4e-14  Score=112.84  Aligned_cols=52  Identities=29%  Similarity=0.688  Sum_probs=48.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          584 SSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       584 ~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      .....+||.+||.+|+.||..||.+++.+|.+||.+|||||..||+.||++|
T Consensus         9 ~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           9 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             CcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            3344689999999999999999998889999999999999999999999987

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.5e-14  Score=121.20  Aligned_cols=69  Identities=25%  Similarity=0.319  Sum_probs=58.7

Q ss_pred             CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420           90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK  169 (646)
Q Consensus        90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k  169 (646)
                      +..-.++|+||||+.   +||.++||+|||+|+++||||++++.             .+.+.+.|+.|++||++|++   
T Consensus        12 ~~~~~~~y~iL~v~~---~as~~eIKkAYrrl~~~~HPDk~~~~-------------~~~a~~~f~~i~~Ay~~L~~---   72 (88)
T d1iura_          12 GSILKEVTSVVEQAW---KLPESERKKIIRRLYLKWHPDKNPEN-------------HDIANEVFKHLQNEINRLEK---   72 (88)
T ss_dssp             SSCHHHHHHHHHHTT---SSCSHHHHHHHHHHHHHTCTTTSSSC-------------HHHHHHHHHHHHHHHHHHHH---
T ss_pred             hhHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHHhccccccch-------------hhHHHHHHHHHHHHHHHHHH---
Confidence            344579999999999   99999999999999999999998852             34578999999999999975   


Q ss_pred             hhhhcccC
Q 006420          170 RRIYDSTD  177 (646)
Q Consensus       170 R~~YDs~~  177 (646)
                      +..||..+
T Consensus        73 ~~~~d~~~   80 (88)
T d1iura_          73 QAFLDQNA   80 (88)
T ss_dssp             HTTCSSSS
T ss_pred             HHHhhccc
Confidence            56666654

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-13  Score=107.84  Aligned_cols=47  Identities=36%  Similarity=0.777  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420          460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV  508 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~  508 (646)
                      ..||.+|+.+|.+||.+||+||++||++||.+|  |||++||+.+||.+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v--gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH--CCCHHHHHHHHHHH
Confidence            579999999999999999999999999999999  49999999999985

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.8e-12  Score=100.01  Aligned_cols=49  Identities=31%  Similarity=0.702  Sum_probs=46.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKT  507 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~  507 (646)
                      ...+||.+|+.+|..+|..||.|++.+|..||.+|| |||++||+.||+.
T Consensus        11 ~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1          11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            567899999999999999999999999999999998 7999999999986

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.18  E-value=1.6e-11  Score=97.35  Aligned_cols=48  Identities=29%  Similarity=0.634  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420          460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV  508 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~  508 (646)
                      ++||.+|+.+|..+|..||.|++++|..||.+|+ |||+.||+.||+.+
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~L   49 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEIL   49 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            5899999999999999999999999999999998 69999999999865

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=6.2e-11  Score=88.33  Aligned_cols=44  Identities=30%  Similarity=0.598  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      .+||++||.+|..+++.||    ++|..||..|||||..+|++||..+
T Consensus         2 ~~WT~eED~~L~~~v~~~G----~~W~~Ia~~~~gRt~~~~knr~~~~   45 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLG----NRWAEIAKLLPGRTDNAIKNHWNST   45 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHS----SCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh----hHHHHHHhHcCCCCHHHHHHHHHHH
Confidence            4799999999999999997    4799999999999999999999865

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.1e-10  Score=86.93  Aligned_cols=43  Identities=30%  Similarity=0.550  Sum_probs=39.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 006420          589 AWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFAS  634 (646)
Q Consensus       589 ~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~  634 (646)
                      .||.+|+.+|..|+.+||.+   .|..||..|||||..||+.||..
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~---nW~~Ia~~~~~Rt~~Qcr~r~~~   45 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHYMK   45 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCc---cHHHHHHHcCCCCHHHHHHHHHH
Confidence            59999999999999999843   69999999999999999999964

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=2.5e-10  Score=86.85  Aligned_cols=44  Identities=18%  Similarity=0.646  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFAS  634 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~  634 (646)
                      .+||++||.+|..++..||.   ..|..||..|||||..||+.||..
T Consensus         4 g~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qc~~Rw~~   47 (52)
T d1gvda_           4 GPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHN   47 (52)
T ss_dssp             CSCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCCHHHHHHHHHh
Confidence            57999999999999999974   369999999999999999999974

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=6e-10  Score=84.66  Aligned_cols=47  Identities=36%  Similarity=0.541  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      .+|||.+|+.+|..+|..|+.+   +|..||.+|| +||..||+.||.++|
T Consensus         3 rg~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~-~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLK-GRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTST-TCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHC-CCCHHHHHHHHHhhC
Confidence            4799999999999999999443   6999999998 799999999999876

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=1.4e-09  Score=81.89  Aligned_cols=45  Identities=18%  Similarity=0.558  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      ..||.+||..|..++..||.   ..|..||..|||||..||+.||...
T Consensus         2 ~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~   46 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGT---DDWKVIANYLPNRTDVQCQHRWQKV   46 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCS---SCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCCHHHHHHHHHhh
Confidence            36999999999999999974   3699999999999999999999753

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.3e-09  Score=79.62  Aligned_cols=45  Identities=18%  Similarity=0.300  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420          460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV  508 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~  508 (646)
                      ..||.+|+.+|..+|++|+.|   +|..||.+|| +||+.||+.||.++
T Consensus         2 ~~Wt~eEd~~L~~~v~~~G~~---nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDCGFG---NWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCc---cHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            359999999999999999433   6999999999 69999999999864

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=2e-09  Score=81.06  Aligned_cols=46  Identities=28%  Similarity=0.507  Sum_probs=41.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      +.||.+|+.+|..+|+.|+.|   .|..||.+|+ |||..||+.||.++|
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~-~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTD---DWKVIANYLP-NRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSS---CHHHHHHTST-TCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHC-CCCHHHHHHHHHhhC
Confidence            579999999999999999544   5999999998 699999999999976

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.1e-08  Score=86.11  Aligned_cols=57  Identities=12%  Similarity=0.306  Sum_probs=49.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhh
Q 006420          584 SSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRS  641 (646)
Q Consensus       584 ~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~  641 (646)
                      ......||.|||+.|.+.++.++. ...-|..||..+||||.+||++||+.|..+|..
T Consensus        30 G~~~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~   86 (95)
T d1ug2a_          30 GEKVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCCcCHHHHHHHHHHHHHcCC-cHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            344568999999999999999973 234599999999999999999999999999864

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=2.3e-10  Score=95.95  Aligned_cols=49  Identities=22%  Similarity=0.343  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCC--CCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          460 KPWSKEEIELLRKGMQKYPKG--TSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~g--t~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      ++||.||+.+|.++|..||..  ....|..||.+|+ |||.+||+.||.++|
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L   52 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYL   52 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence            579999999999999999542  2346999999998 799999999999987

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.9e-09  Score=84.42  Aligned_cols=44  Identities=23%  Similarity=0.498  Sum_probs=40.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 006420          589 AWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLK  636 (646)
Q Consensus       589 ~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~  636 (646)
                      -||++|+.+|..+|..||.    .|..||..|||||..||++||..+.
T Consensus         4 ~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~Rt~~q~k~ry~~~~   47 (65)
T d2cu7a1           4 KWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYF   47 (65)
T ss_dssp             CCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcc----hHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            5999999999999999974    6999999999999999999996543

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.1e-09  Score=79.98  Aligned_cols=46  Identities=15%  Similarity=0.476  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCC--CCCHHHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVP--GKTVIQCKKKFASLK  636 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vp--grt~~~c~~Ryk~l~  636 (646)
                      .+||++|+.+|..++..||.+   .|..||..+|  |||..||++||..|.
T Consensus         3 ~~WT~eED~~L~~~v~~~G~~---~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           3 QAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC---CHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            589999999999999999853   7999998866  999999999998875

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=4.4e-09  Score=83.36  Aligned_cols=45  Identities=20%  Similarity=0.508  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLK  636 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~  636 (646)
                      ..||++|+.+|..+|..||.    +|..||..|||||..||++||..+.
T Consensus         6 ~~WT~eE~~~f~~~~~~~G~----~w~~Ia~~~~~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           6 ARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNKSVVQVKNFFVNYR   50 (65)
T ss_dssp             SSCCHHHHHHHHHHHHHHSS----CHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHhCc----hHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            46999999999999999985    5999999999999999999997653

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=6.8e-09  Score=77.06  Aligned_cols=45  Identities=22%  Similarity=0.562  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      .|||.||+.+|..+|..|  |.  +|..||.+|+ |||..+|..+|..++
T Consensus         2 ~~WT~eED~~L~~~v~~~--G~--~W~~Ia~~~~-gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRL--GN--RWAEIAKLLP-GRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHH--SS--CHHHHHTTCT-TCCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHH--hh--HHHHHHhHcC-CCCHHHHHHHHHHHc
Confidence            689999999999999999  43  6999999998 799999999998764

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.9e-09  Score=85.24  Aligned_cols=46  Identities=20%  Similarity=0.364  Sum_probs=41.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420          586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL  635 (646)
Q Consensus       586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l  635 (646)
                      ..++||++|+.+|..|+..||+    .|..||.+|||||..||++||...
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~----~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPK----NFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTS----CSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC----cHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3468999999999999999985    599999999999999999999643

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.7e-08  Score=77.37  Aligned_cols=46  Identities=11%  Similarity=0.432  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC--CCCCHHHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAV--PGKTVIQCKKKFASLK  636 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V--pgrt~~~c~~Ryk~l~  636 (646)
                      .+||++||.+|..+++.|+.+   .|..||..+  +|||..||+.||.-|.
T Consensus         3 ~~WT~eEd~~L~~~V~~~G~~---~W~~I~~~~~~~~Rt~~q~k~Rwrn~~   50 (55)
T d1w0ua_           3 QKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMK   50 (55)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCC---hHHHHHhhcCCCCcCHHHHHHHHHHHh
Confidence            479999999999999999743   699999884  5999999999998765

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=9.6e-09  Score=85.88  Aligned_cols=47  Identities=13%  Similarity=0.347  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHhCCC--CCChhHHHHHhhCCCCCHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPK--ETSQRWERVATAVPGKTVIQCKKKFAS  634 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~--~~~~rW~~IA~~Vpgrt~~~c~~Ryk~  634 (646)
                      ..||.+||.+|..++..||.  +....|..||..|||||.+||++||..
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~   50 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRV   50 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHH
Confidence            36999999999999999984  233559999999999999999999974

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.5e-08  Score=75.48  Aligned_cols=47  Identities=28%  Similarity=0.443  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc-CCCCHHHHHHHHHHH
Q 006420          459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG-TGRSVEEILKATKTV  508 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~-~~Rt~ke~~~~~k~~  508 (646)
                      .++||+||+.+|..+|..|+.|   .|..||..++ .+||..||..||+++
T Consensus         2 r~~WT~eED~~L~~~v~~~G~~---~W~~I~~~~~~~~Rt~~q~r~Rw~nl   49 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTM   49 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC---CHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence            4689999999999999999554   6999998864 379999999999985

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=7.9e-08  Score=73.53  Aligned_cols=48  Identities=31%  Similarity=0.561  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc-CCCCHHHHHHHHHHHh
Q 006420          459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG-TGRSVEEILKATKTVL  509 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~-~~Rt~ke~~~~~k~~l  509 (646)
                      ..+||.+|+.+|..+|++|+.|   .|..||..++ .+||..||..||++++
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~~---~W~~I~~~~~~~~Rt~~q~k~Rwrn~~   50 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMK   50 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC---hHHHHHhhcCCCCcCHHHHHHHHHHHh
Confidence            4689999999999999999433   6999999743 3799999999999964

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.41  E-value=1.3e-07  Score=78.29  Aligned_cols=45  Identities=27%  Similarity=0.461  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhHHHHHhh----CCCCCHHHHHHHHHHHH
Q 006420          589 AWSAVQERALVQALKTFPKETSQRWERVATA----VPGKTVIQCKKKFASLK  636 (646)
Q Consensus       589 ~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~----Vpgrt~~~c~~Ryk~l~  636 (646)
                      +||.+|+.+|..++..||.+   .|..|+..    +||||..||+.||..|.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~---~W~~I~~~~~~~~~~Rt~~qck~RWrn~l   50 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLV   50 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcc---cHHHHHHHHHhhccCCCHHHHHHHHHHHh
Confidence            79999999999999999854   79999975    78999999999997765

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.2e-07  Score=73.21  Aligned_cols=45  Identities=36%  Similarity=0.733  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      .-||.||+.+|..+|..|  |.  .|..||.+|| +||..+|..+|..++
T Consensus         3 ~~WT~eEd~~l~~~~~~~--G~--~W~~Ia~~~~-~Rt~~q~k~ry~~~~   47 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKF--GR--RWTKISKLIG-SRTVLQVKSYARQYF   47 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHT--CS--CHHHHHHHHS-SSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHh--cc--hHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            459999999999999999  42  6999999999 699999999998764

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=2.7e-07  Score=70.97  Aligned_cols=42  Identities=19%  Similarity=0.417  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHh-hCCCCCHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVAT-AVPGKTVIQCKKKFA  633 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~-~Vpgrt~~~c~~Ryk  633 (646)
                      +.||++|..+|+.||..||++    |..|+. .||+||..||++.|-
T Consensus         2 d~WT~eE~~~F~~~~~~yGKd----f~~I~~~~v~~Ks~~~~v~fYY   44 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYY   44 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHccc----HHHHHHHHcCCCCHHHHHHHHH
Confidence            479999999999999999864    999997 689999999999884

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.32  E-value=3.1e-07  Score=76.06  Aligned_cols=47  Identities=23%  Similarity=0.446  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHh---cCCCCHHHHHHHHHHHh
Q 006420          460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYI---GTGRSVEEILKATKTVL  509 (646)
Q Consensus       460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~---~~~Rt~ke~~~~~k~~l  509 (646)
                      .|||.||+..|+.+|.+|+.|   +|..|+..+   ..+||..||..||+++|
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~---~W~~I~~~~~~~~~~Rt~~qck~RWrn~l   50 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLV   50 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcc---cHHHHHHHHHhhccCCCHHHHHHHHHHHh
Confidence            489999999999999999544   699999864   44799999999999986

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.5e-06  Score=68.42  Aligned_cols=45  Identities=29%  Similarity=0.513  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420          459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV  508 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~  508 (646)
                      ...||++|+.+|..++..|  |+  +|..||.+|| |||..+|+.+|..+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~--G~--~w~~Ia~~~~-~kt~~q~~~~y~~~   49 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKY--GR--DFQAISDVIG-NKSVVQVKNFFVNY   49 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHH--SS--CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHh--Cc--hHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            4579999999999999999  43  5999999999 69999999999864

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=8e-07  Score=70.63  Aligned_cols=45  Identities=18%  Similarity=0.310  Sum_probs=40.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHH
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKT  507 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~  507 (646)
                      ...+||.+|+.+|..+|..|  |+  .|..||.+|+ +||..||+.+|..
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~--G~--~w~~Ia~~~~-~rt~~q~~~~yy~   60 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQH--PK--NFGLIASFLE-RKTVAECVLYYYL   60 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHT--TS--CSSSHHHHTT-TSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH--CC--cHHHHHHHcC-CCCHHHHHHHHHH
Confidence            45689999999999999999  53  5999999998 6999999999974

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=9.2e-06  Score=63.30  Aligned_cols=51  Identities=24%  Similarity=0.439  Sum_probs=46.9

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      ....|+.+|++.|-.|+..+|+..+.-|..||..||+ ||+.||..+|.+.+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGt-RSaeECQ~ky~~~~   57 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENP   57 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHcc-CCHHHHHHHHHhCc
Confidence            3467999999999999999999999999999999995 99999999998754

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=3.7e-05  Score=59.83  Aligned_cols=47  Identities=26%  Similarity=0.562  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 006420          588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFAS  634 (646)
Q Consensus       588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~  634 (646)
                      ..|+.+|-..|..|+.-+|+..+-.|..||..|..||..||-..|.+
T Consensus         9 ~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~   55 (73)
T d1wgxa_           9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYME   55 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHh
Confidence            47999999999999999999999999999999999999999999865

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=3.8e-05  Score=64.14  Aligned_cols=50  Identities=18%  Similarity=0.323  Sum_probs=42.8

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420          458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL  509 (646)
Q Consensus       458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l  509 (646)
                      ....||.|||.+|...|+.+.+ ...-|..||.+|+ |||..||..||+.++
T Consensus        32 ~~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          32 KVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHHcCC-cHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            4567999999999999999932 2345999999998 699999999999864

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00033  Score=53.19  Aligned_cols=41  Identities=24%  Similarity=0.453  Sum_probs=36.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCcchhHHHhH-hcCCCCHHHHHHHHH
Q 006420          461 PWSKEEIELLRKGMQKYPKGTSRRWEVISEY-IGTGRSVEEILKATK  506 (646)
Q Consensus       461 ~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~-~~~~Rt~ke~~~~~k  506 (646)
                      .||++|..++..++..|  |.  .|..|+.. || +||+.||+..|-
T Consensus         3 ~WT~eE~~~F~~~~~~y--GK--df~~I~~~~v~-~Ks~~~~v~fYY   44 (57)
T d2crga1           3 EWSASEACLFEEALEKY--GK--DFNDIRQDFLP-WKSLTSIIEYYY   44 (57)
T ss_dssp             CCCHHHHHHHHHHHHHT--CS--CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH--cc--cHHHHHHHHcC-CCCHHHHHHHHH
Confidence            69999999999999999  43  59999986 56 699999998775

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.26  E-value=0.023  Score=43.73  Aligned_cols=47  Identities=11%  Similarity=0.208  Sum_probs=37.7

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhH--HHHHh--hCCCCCHHHHHHHHHHHH
Q 006420          587 QDAWSAVQERALVQALKTFPKETSQRW--ERVAT--AVPGKTVIQCKKKFASLK  636 (646)
Q Consensus       587 ~~~WT~eE~~~Le~al~~~p~~~~~rW--~~IA~--~Vpgrt~~~c~~Ryk~l~  636 (646)
                      .-.||+|++..|+.||..||.   ++|  ..|..  .|||.|..+|.-|-+-.+
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~---~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGV---ERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCT---TTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCc---cccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            347999999999999999974   355  56764  389999999998875443

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.30  E-value=0.045  Score=40.23  Aligned_cols=38  Identities=21%  Similarity=0.400  Sum_probs=34.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHH
Q 006420          589 AWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCK  629 (646)
Q Consensus       589 ~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~  629 (646)
                      .||.-+=..|..|+.+||.+   .-+.||..|.|||..|+.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~---d~~~Ia~e~~~Kt~eEV~   38 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRD---DIDNIAKDVEGKTPEEVI   38 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTT---CHHHHTTSSTTCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh---hHHHHHHHhcCCCHHHHH
Confidence            49999999999999999964   689999999999999964

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.20  E-value=0.2  Score=36.62  Aligned_cols=40  Identities=25%  Similarity=0.572  Sum_probs=34.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHH
Q 006420          461 PWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKA  504 (646)
Q Consensus       461 ~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~  504 (646)
                      .||.-|.+.|++|+.+|  |-. .-+.||..|. |+|.+||..-
T Consensus         1 ~WnrrdF~~Fi~a~eky--GR~-d~~~Ia~e~~-~Kt~eEV~~Y   40 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKY--GRD-DIDNIAKDVE-GKTPEEVIEY   40 (52)
T ss_dssp             TCCHHHHHHHHHHHHHH--CTT-CHHHHTTSST-TCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH--HHh-hHHHHHHHhc-CCCHHHHHHH
Confidence            39999999999999999  543 5899999996 6999998543

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.96  E-value=0.66  Score=35.18  Aligned_cols=46  Identities=13%  Similarity=0.222  Sum_probs=36.2

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCCCcch--hHHHhHhcC-CCCHHHHHHHHHH
Q 006420          459 EKPWSKEEIELLRKGMQKYPKGTSRRW--EVISEYIGT-GRSVEEILKATKT  507 (646)
Q Consensus       459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW--~~IA~~~~~-~Rt~ke~~~~~k~  507 (646)
                      .-.||+|+...|..||+.+  |. ++|  ..|.+.|+. ++|..+|..+...
T Consensus         7 R~~WT~elH~~Fv~Av~~l--G~-~~atpk~I~~~m~v~~lT~~qV~SHlQK   55 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHL--GV-ERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHH--CT-TTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHh--Cc-cccchHHHHHHcCCCCCCHHHHHHHHHH
Confidence            4469999999999999999  42 345  688888854 6899999876543