Citrus Sinensis ID: 006424

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-----
Protein Sequence
MIENGNTEVKKAKREIIFIVARESTTLACSFLFPGLAPLVFVVVAVARALQNPDLEKPPLAIWFQFRGFKSSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHEEEEEEEcccEEEEEEEcccccEEEEEEEEccccccccccccccEEEEEEccEEEccccEEcccccccccEEEEcccccEEEEEccccccEEEEEccccccEEEEEEEEcccccEEEEEccccEEEEEEccccEEccccccEEEEEEcccccccccccEEEEcccEEEEEEcccccccEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccccccEEEccccEEEEEEccccEEEEEEccccEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEccccEEEEEEEccccccEEEEEEccccEEEEEcccccEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEEEcccccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccEEEEEEcccccEEEEEccEEcccccEEEEEcccccEEcccccccccccccccccEEEEEEcccccEEEEEEccccEEEcccccccccccccccccccccEEEccccccEEEEEcccccEEEEEcccccEEEEcccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccEEEEEcEccccccEEEEccccEEEEcccccEEEEEcccccEEcccccEEEEEEcccccEEEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEEccccEEEEccccccEEEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcHccccccccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccEEEc
Coil and Loop (DISEMBL)
MIENGNTEVKKAKREIIFIVARESttlacsflfpglaPLVFVVVAVARAlqnpdlekpplaiwfqfrgfksssmnradenlncfdremdSEANCMVDELEQDQMNECVVtlegesngfsqsvdkfenpfpeckgvniKKVKKLWKRIISMKKRNVetcmsekrkpnsekpkankMEVKQNKKKCMEFTALYTSQEIQAHkgciwtlkfspdgrylasggedgVVRIWHVTSVAAScksftddggfgsnakegkikfgkkksshvpvvipdevfqieesplqelhghkgdvldlawsnsNYLLSCSMDKTVRMWQVGCnqclnvfdhhnyvtcvqfnpiddnyfisgsidgkVRIWGVCEKRVVDWADVRDVISAIcyipdgkgfiVGSITGTCHFykasgndlklekvdfhdrkktsgnkitgiqfsrdeSQRIMITSEDSKLRILDGVDVihkfkglpksgsqmsasFTTTGKHIISIGDDCRVYVWnydelcfpsskqknsvrsCEHFFSEGVSvavqwpgigteqkslcssslrdcsqkwdnletapwirdserfslgswfsndgpcrgsatwpaeklplwdvtidsdgycqdpqqqRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMiktfhnyglpirl
Flexible Loop (DISEMBL)
miengntevkkakrEIIFIVARESTTLACSFLFPGLAPLVFVVVAVARALqnpdlekpplaIWFQFRGFKSSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKfenpfpeckgvnikkvkkLWKRIISmkkrnvetcmsekrkpnsekpkankmevkQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAScksftddggfgsnAKEGKikfgkkksshvpvvIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGndlklekvdfhdrkktsgnkitgiqfsrdesqRIMITsedsklrilDGVDVIHKFkglpksgsqmSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Low Complexity Region (SEG)
MIENGNTEVKKAKREIIFIVARESTTLACSflfpglaplvfvvvavaRALQNPDLEKPPLAIWFQFRGFKSSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAkegkikfgkkkSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCqdpqqqrlqqqCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Disordered region (IsUnstruct)
*************REIIFIVARESTTLACSFLFPGLAPLVFVVVAVARALQNPDLEKPPLAIWFQFRGFK***********************************ECVVTL*************FENPFPECKGVNIKKVKKLWKRIISMK********************************CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF*****************HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF*************************I****SKLRILDGVDVIHKFKGL*********SFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLP***
Disordered Region (DISOPRED)
****************IFIVARESTTLACSFLFPGLAPLVFVVVAVARALQNPDLEKPPLAIWFQ*RG*****MNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFEN******GVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG*****************VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSD***************LNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Disordered Region (DISEMBL)
*********KKAKREIIFIVARESTTLACSFLFPGLAPLVFVVVAVARALQNPDLEKPPLAIWFQFRGFKSSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVE**********************QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS*********CEHFFSEGVSVAVQWPGIGTE***********CSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Disordered Region (DISPRO)
*I*NGNTEVKKAKREIIFIVARESTTLACSFLFPGLAPLVFVVVAVARALQNPDLEKPPLAIWFQFRGFKSSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIENGNTEVKKAKREIIFIVARESTTLACSFLFPGLAPLVFVVVAVARALQNPDLEKPPLAIWFQFRGFKSSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	645	2.2.26 [Sep-21-2011]
Q6LA54	933	Uncharacterized WD repeat	yes	no	0.409	0.282	0.360	9e-48
Q498F0	912	WD repeat-containing prot	N/A	no	0.510	0.360	0.329	8e-46
Q9XSC3	912	WD repeat-containing prot	yes	no	0.471	0.333	0.338	8e-46
Q5JSH3	913	WD repeat-containing prot	yes	no	0.463	0.327	0.339	2e-44
Q9R037	908	WD repeat-containing prot	yes	no	0.463	0.329	0.336	3e-44
Q6NVE8	915	WD repeat-containing prot	yes	no	0.463	0.326	0.336	3e-44
Q03177	834	WD repeat-containing prot	yes	no	0.488	0.377	0.311	4e-39
O60136	586	Uncharacterized WD repeat	no	no	0.444	0.489	0.277	4e-39
P32330	852	2-deoxy-glucose resistant	no	no	0.435	0.329	0.272	1e-22
Q498M4	334	WD repeat-containing prot	no	no	0.406	0.784	0.277	3e-20

>sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2

 Score =  192 bits (487), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 168/305 (55%), Gaps = 41/305 (13%)

Query: 202 CIWTLKFSPDGRYLASGGEDGVVRIW------HVTSVAA-SCKSFTDDGGFGSNAKEGKI 254
            IW +KFS DGRYLA GG+D ++RIW      H  SVA+ +C S  ++      A     
Sbjct: 318 AIWAMKFSRDGRYLAVGGQDRILRIWAVLDSEHARSVASETCSSDPNNPKLNLKA----- 372

Query: 255 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 314
                     PV          E+P++E  GH  D+LDL+WS +N+LLS SMDKT R+W 
Sbjct: 373 ----------PV--------FSEAPIREYAGHTADILDLSWSRNNFLLSSSMDKTARLWH 414

Query: 315 VGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA 374
                CL  F+H ++VT + F+P DD +F+SGS+D K+R+W + EK V  W ++ ++I+A
Sbjct: 415 PVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVSFWNELPELITA 474

Query: 375 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNKITGIQFSRDE--- 430
           + + PDG   I G+  G C FY   G   + +      R K + G+K+TGIQ +R +   
Sbjct: 475 VAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIRSSRGKNAKGSKVTGIQ-TRTQMID 533

Query: 431 ----SQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR 484
                  +++T+ DS++RI +  D  +  KFKG   + SQ  A F   G ++I   +D +
Sbjct: 534 NIAGDTEMLVTTNDSRIRIYNLRDKSLELKFKGHANAQSQNRAYFDDDGNYVICGSEDHQ 593

Query: 485 VYVWN 489
           V++W+
Sbjct: 594 VFIWD 598

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q498F0|WDR44_XENLA WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1

 Score =  185 bits (470), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 193/367 (52%), Gaps = 38/367 (10%)

Query: 174 KMEVKQNKKKCMEFTALYTSQEIQA-HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV 232
           K +     K   +F  +   Q++   H G +WT+KFS  GR LAS G+D VVRIW + + 
Sbjct: 486 KFKAAHGFKGPYDFEQIKVVQDLSGEHVGAVWTMKFSHCGRLLASAGQDNVVRIWVLKNA 545

Query: 233 AASCKS----FTDDGGFGSNAKEGKIKFGKKKS-----SHVPVVIPDEV-FQIEESPLQE 282
                +    +  +G    +  +  +   K  +     S    V PD+      + P  +
Sbjct: 546 FDYFNNMRIKYNTEGRVSPSPSQESLNSSKSDTDGGVFSGTDDVDPDDKNAPFRQVPFCK 605

Query: 283 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 342
             GH  D+LDL+WS + +LLS SMDKTVR+W +   +CL  F H ++VT + F+P DD Y
Sbjct: 606 YKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRY 665

Query: 343 FISGSIDGKVRIWGVCEKRVVDWADV---RDVISAICYIPDGKGFIVGSITGTCHFYKAS 399
           F+SGS+DGK+R+W + +K+V  W ++     +I+A  +  +GK  ++G+  G C FY   
Sbjct: 666 FLSGSLDGKLRLWNIPDKKVALWNEIDGQTKLITAANFCQNGKHAVIGTYDGRCIFYDT- 724

Query: 400 GNDLKLEKVDFHDR--------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD- 450
                 E + +H +        +   G KITGI+    E+ +I++TS DS++R+ D  D 
Sbjct: 725 ------EHLKYHTQIHVRSTRGRNRVGRKITGIEPLPGEN-KILVTSNDSRIRLYDLRDL 777

Query: 451 -VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN-YDELCFPSSKQKNSVRSCE 508
            +  K+KG   S SQ+ ASF+    +I+S  +D  VY+W+ Y +L      +  SVR   
Sbjct: 778 SLSMKYKGCVNSSSQIKASFSHDFTYIVSGSEDKYVYIWSTYHDLS-----KFTSVRRDR 832

Query: 509 HFFSEGV 515
           + F EG+
Sbjct: 833 NDFWEGI 839

Downstream effector for rab11. May be involved in vesicle recycling.

Xenopus laevis (taxid: 8355)

>sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1

 Score =  185 bits (470), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 183/340 (53%), Gaps = 36/340 (10%)

Query: 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS----FTDDGGFGSNAKEGKI 254
           H G +WT+KFS  GR LAS G+D VVRIW + +      +    +  +G    +  +  +
Sbjct: 509 HMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFNNMRMKYNTEGRVSPSPSQESL 568

Query: 255 KFGKKKSSHVPVVIPDEVFQIEESPLQE-----LHGHKGDVLDLAWSNSNYLLSCSMDKT 309
              K  +        DE    + +P ++       GH  D+LDL+WS + +LLS SMDKT
Sbjct: 569 NSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKT 628

Query: 310 VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV- 368
           VR+W +   +CL  F H ++VT + F+P DD YF+SGS+DGK+R+W + +K+V  W +V 
Sbjct: 629 VRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVD 688

Query: 369 --RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR--------KKTSG 418
               +I+A  +  +GK  ++G+  G C FY         E + +H +        +   G
Sbjct: 689 GQTKLITAANFCQNGKYAVIGTYDGRCIFYDT-------EHLKYHTQIHVRSTRGRNKVG 741

Query: 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHI 476
            KITGI+    E+ +I++TS DS++R+ D  D  +  K+KG   S SQ+ ASF+    ++
Sbjct: 742 RKITGIEPLPGEN-KILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFNYL 800

Query: 477 ISIGDDCRVYVWN-YDELCFPSSKQKNSVRSCEHFFSEGV 515
           +S  +D  VY+W+ Y +L      +  SVR   + F EG+
Sbjct: 801 VSGSEDKYVYIWSTYHDLS-----KFTSVRRDRNDFWEGI 835

Downstream effector for RAB11. May be involved in vesicle recycling.

Bos taurus (taxid: 9913)

>sp|Q5JSH3|WDR44_HUMAN WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1

 Score =  181 bits (458), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 183/345 (53%), Gaps = 46/345 (13%)

Query: 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 258
           H G +WT+KFS  GR LAS G+D VVRIW + +       + ++     N  EG++    
Sbjct: 510 HMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAF----DYFNNMRMKYNT-EGRVSPSP 564

Query: 259 KKSSHVPVVI-------------PDEV-FQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 304
            + S                   PD+      + P  +  GH  D+LDL+WS + +LLS 
Sbjct: 565 SQESLSSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSS 624

Query: 305 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 364
           SMDKTVR+W +   +CL  F H ++VT + F+P DD YF+SGS+DGK+R+W + +K+V  
Sbjct: 625 SMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVAL 684

Query: 365 WADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------- 413
           W +V     +I+A  +  +GK  ++G+  G C FY         E + +H +        
Sbjct: 685 WNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT-------EHLKYHTQIHVRSTRG 737

Query: 414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTT 471
           +   G KITGI+    E+ +I++TS DS++R+ D  D  +  K+KG   S SQ+ ASF+ 
Sbjct: 738 RNKVGRKITGIEPLPGEN-KILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSH 796

Query: 472 TGKHIISIGDDCRVYVWN-YDELCFPSSKQKNSVRSCEHFFSEGV 515
              +++S  +D  VY+W+ Y +L      +  SVR   + F EG+
Sbjct: 797 DFTYLVSGSEDKYVYIWSTYHDLS-----KFTSVRRDRNDFWEGI 836

Downstream effector for RAB11. May be involved in vesicle recycling.

Homo sapiens (taxid: 9606)

>sp|Q9R037|WDR44_RAT WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1

 Score =  180 bits (457), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 183/345 (53%), Gaps = 46/345 (13%)

Query: 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 258
           H G +WT+KFS  GR LAS G+D +VRIW + +       + ++     N  EG++    
Sbjct: 505 HMGAVWTMKFSHCGRLLASAGQDNIVRIWALKNAF----DYFNNMRMKYNT-EGRVSPSP 559

Query: 259 KKSSHVPVVI-------------PDEV-FQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 304
            + S                   PD+      + P  +  GH  D+LDL+WS + +LLS 
Sbjct: 560 SQESLSSSKSDTDMGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSS 619

Query: 305 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 364
           SMDKTVR+W +   +CL  F H ++VT + F+P DD YF+SGS+DGK+R+W + +K+V  
Sbjct: 620 SMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVAL 679

Query: 365 WADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------- 413
           W +V     +I+A  +  +GK  ++G+  G C FY         E + +H +        
Sbjct: 680 WNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT-------EHLKYHTQIHVRSTRG 732

Query: 414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTT 471
           +   G KITGI+    E+ +I++TS DS++R+ D  D  +  K+KG   S SQ+ ASF+ 
Sbjct: 733 RNKVGRKITGIEPLPGEN-KILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSH 791

Query: 472 TGKHIISIGDDCRVYVWN-YDELCFPSSKQKNSVRSCEHFFSEGV 515
              +++S  +D  VY+W+ Y +L      +  SVR   + F EG+
Sbjct: 792 DFTYLVSGSEDKYVYIWSTYHDLS-----KFTSVRRDRNDFWEGI 831

Downstream effector for RAB11. May be involved in vesicle recycling.

Rattus norvegicus (taxid: 10116)

>sp|Q6NVE8|WDR44_MOUSE WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1

 Score =  180 bits (456), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 183/345 (53%), Gaps = 46/345 (13%)

Query: 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 258
           H G +WT+KFS  GR LAS G+D +VRIW + +       + ++     N  EG++    
Sbjct: 512 HMGAVWTMKFSHCGRLLASAGQDNIVRIWALKNAF----DYFNNMRMKYNT-EGRVSPSP 566

Query: 259 KKSSHVPVVI-------------PDEV-FQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 304
            + S                   PD+      + P  +  GH  D+LDL+WS + +LLS 
Sbjct: 567 SQESLSSSKSDTDMGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSS 626

Query: 305 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 364
           SMDKTVR+W +   +CL  F H ++VT + F+P DD YF+SGS+DGK+R+W + +K+V  
Sbjct: 627 SMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVAL 686

Query: 365 WADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------- 413
           W +V     +I+A  +  +GK  ++G+  G C FY         E + +H +        
Sbjct: 687 WNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT-------EHLKYHTQIHVRSTRG 739

Query: 414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTT 471
           +   G KITGI+    E+ +I++TS DS++R+ D  D  +  K+KG   S SQ+ ASF+ 
Sbjct: 740 RNKVGRKITGIEPLPGEN-KILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSH 798

Query: 472 TGKHIISIGDDCRVYVWN-YDELCFPSSKQKNSVRSCEHFFSEGV 515
              +++S  +D  VY+W+ Y +L      +  SVR   + F EG+
Sbjct: 799 DFTYLVSGSEDKYVYIWSTYHDLS-----KFTSVRRDRNDFWEGI 838

Downstream effector for RAB11. May be involved in vesicle recycling.

Mus musculus (taxid: 10090)

>sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1

 Score =  163 bits (412), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 184/379 (48%), Gaps = 64/379 (16%)

Query: 169 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKG---------------CIWTLKFSPDGR 213
           +PK  KM   + +K   +F  L+ +QE+ A++G                IW+ KFS DG+
Sbjct: 129 EPKYIKM--LKRRKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTKFSRDGK 186

Query: 214 YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE-- 271
           ++A+G +DG +RIW V  + +  +    D    SN KE + K  + K     +  P E  
Sbjct: 187 FMATGSKDGKIRIWKV--IGSPVERAELDSSAESN-KEARAKSMRIKQQVSSLNNPKEKQ 243

Query: 272 -----VFQIEE--------------SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRM 312
                  + EE              +PL+    H  DVLD+ WS +N++LS SMDKTV++
Sbjct: 244 FLDSATEKYEEKEKLLNLYAPVFHPTPLRLYKEHVQDVLDINWSKNNFILSASMDKTVKL 303

Query: 313 WQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI 372
           W       L  F H ++VTCV+F+P DD +FISG +D K R+W + +  V    D +D+I
Sbjct: 304 WHPDRKNSLKTFIHPDFVTCVEFHPTDDRFFISGCLDHKCRLWSILDDEVSFEYDCQDLI 363

Query: 373 SAICYIP-DGKGFIVGSITGTCHFYKASG---------NDLKLEKVDFH------DRKKT 416
           +++   P +GK  I+G+  G  H     G          D + ++ + H      D K  
Sbjct: 364 TSVTLSPEEGKYTIIGTFNGYVHILMTRGLTPVSSFHVADRQTQEQNAHVMVTETDSKIR 423

Query: 417 SGNKITGIQFSR---DESQRIMITSEDSKLRILD--GVDVIHKFKGLPKSGSQMSASFTT 471
            G ++TG+Q  R   D S R+++TS DS++RI D     ++   KG     SQ  A  + 
Sbjct: 424 HGPRVTGLQAFRSQLDNSFRLVVTSNDSRIRIFDLEQRKLLEVLKGFHSGSSQHKAQLSI 483

Query: 472 -TGKHI-ISIGDDCRVYVW 488
             G+ I ++  DD  VY W
Sbjct: 484 WHGQPIVVNSSDDHWVYGW 502

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O60136|YNS5_SCHPO Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H10.05 PE=4 SV=1

 Score =  163 bits (412), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 160/313 (51%), Gaps = 26/313 (8%)

Query: 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKK 259
           K  +W  + S  G+YLA+ G+D ++R+W V       ++           KEG    G+ 
Sbjct: 186 KESVWASEISKSGKYLATAGKDAIIRVWKVIETPERRETL---------LKEGPQSCGR- 235

Query: 260 KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ 319
                    P  +F+ E  P+ E  GH  +VL ++WS +++LL+ S D+TVR+W     +
Sbjct: 236 ------FFTPSSIFEPE--PVLECVGHNAEVLSISWSKNDFLLTSSADRTVRLWHPKSTK 287

Query: 320 CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP 379
            L VF H+  VTCV F+PIDD YF+SGS+D K+++W +   +++ W ++  V+S IC+ P
Sbjct: 288 SLAVFRHNEIVTCVAFHPIDDRYFVSGSLDCKIQLWSILRHKILHWTELEYVVSTICFYP 347

Query: 380 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR---DESQR--- 433
           DG+  +VG   G C  Y+          +  H   +    ++TG+Q +    ++S+    
Sbjct: 348 DGESIVVGMFYGLCAIYETKNLQYVSSWLIHHSPSRNKKCRVTGLQCASIIPNDSKSDNV 407

Query: 434 IMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491
           +++++ D+ +R+ + V   ++ K     +   ++ +  +    +IIS  D   V +W+  
Sbjct: 408 VLVSTNDNAIRLYNTVTHALVLKLSDAHRVNGRVLSRLSEDNSYIISGSDTNEVVLWHIP 467

Query: 492 ELCFPSSKQKNSV 504
                ++ +K SV
Sbjct: 468 NKVLINASRKRSV 480

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1

 Score =  108 bits (270), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 150/341 (43%), Gaps = 60/341 (17%)

Query: 200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT--------------SVAAS---------- 235
           K  I    FS DG+Y+  G +DG + +W V               SV+AS          
Sbjct: 173 KNSICCCTFSHDGKYMVIGCKDGSLHLWKVINSPVKRSEMGRSEKSVSASRANSLKIQRH 232

Query: 236 -CKSFTDDGGFGSNAKEGKIKF-GKKKSSHV--PVVIPDEVFQIEESPLQELHGHKGDVL 291
                + +G   SN  +   +F G  K  H+  PV   D VF++          H  D+L
Sbjct: 233 LASISSHNGSISSNDLKPSDQFEGPSKQLHLYAPVFYSD-VFRV-------FMEHALDIL 284

Query: 292 DLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 351
           D  WS + +L++ SMDKT ++W       L  F H ++VT   F P DD + I+G +D +
Sbjct: 285 DANWSKNGFLITASMDKTAKLWHPERKYSLKTFVHPDFVTSAIFFPNDDRFIITGCLDHR 344

Query: 352 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCH------------FYKA 398
            R+W + +  V    D +D+I+++   P G  + I+G+  G  +            F+ +
Sbjct: 345 CRLWSILDNEVSYAFDCKDLITSLTLSPPGGEYTIIGTFNGYIYVLLTHGLKFVSSFHVS 404

Query: 399 SGNDLKLEKVDFHDR----KKTSGNKITGIQ--FSR-DESQRIMITSEDSKLRILDGVD- 450
             +     K  FH      K   G +ITG+Q  FS+ D++ R+++T+ DSK++I D  + 
Sbjct: 405 DKSTQGTTKNSFHPSSEYGKVQHGPRITGLQCFFSKVDKNLRLIVTTNDSKIQIFDLNEK 464

Query: 451 -VIHKFKGLPKSGSQMSASFTTTGKH--IISIGDDCRVYVW 488
             +  FKG     S+    F        + +  DD   Y W
Sbjct: 465 KPLELFKGFQSGSSRHRGQFLMMKNEPVVFTGSDDHWFYTW 505

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score =  100 bits (250), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 145/332 (43%), Gaps = 70/332 (21%)

Query: 165 PNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVV 224
           P+S   ++    VK N    ++FT       +  H   + ++KFSP+G +LAS   D ++
Sbjct: 19  PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSPNGEWLASSSADKLI 69

Query: 225 RIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 284
           +IW                     A +GK +                         + + 
Sbjct: 70  KIW--------------------GAYDGKFE-------------------------KTIS 84

Query: 285 GHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY 342
           GHK  + D+AWS +SN L+S S DKT+++W V   +CL     H NYV C  FNP   N 
Sbjct: 85  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 143

Query: 343 FISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGSITGTCHFY-KASG 400
            +SGS D  VRIW V   + +       D +SA+ +  DG   +  S  G C  +  ASG
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203

Query: 401 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGL 458
             LK    D           ++ ++FS +  + I+  + D+ L++ D      +  + G 
Sbjct: 204 QCLKTLIDD-------DNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKCLKTYTGH 255

Query: 459 PKSGSQMSASFTTT-GKHIISIGDDCRVYVWN 489
                 + A+F+ T GK I+S  +D  VY+WN
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	645
225431541	674	PREDICTED: WD repeat-containing protein	0.874	0.836	0.638	0.0
296088582	668	unnamed protein product [Vitis vinifera]	0.855	0.826	0.626	0.0
255552366	654	WD-repeat protein, putative [Ricinus com	0.862	0.850	0.591	0.0
224131190	655	predicted protein [Populus trichocarpa]	0.855	0.842	0.594	0.0
449461887	668	PREDICTED: uncharacterized protein LOC10	0.790	0.763	0.578	1e-173
356511161	675	PREDICTED: WD repeat-containing protein	0.844	0.807	0.530	1e-165
356528542	617	PREDICTED: uncharacterized protein LOC10	0.810	0.847	0.544	1e-164
356518745	665	PREDICTED: uncharacterized protein LOC10	0.772	0.748	0.561	1e-154
356507482	668	PREDICTED: uncharacterized protein LOC10	0.849	0.820	0.525	1e-154
224093348	550	predicted protein [Populus trichocarpa]	0.623	0.730	0.592	1e-147

>gi|225431541|ref|XP_002275497.1| PREDICTED: WD repeat-containing protein 44-like [Vitis vinifera]

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/584 (63%), Positives = 432/584 (73%), Gaps = 20/584 (3%)

Query: 74  MNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFE-----NP 128
           +N  +EN  C  RE D  ANCMVD L Q Q  +  +  EGE+ G   S  +FE       
Sbjct: 99  INCTEENSVCSGREGDVGANCMVDALNQQQSEKQNIDFEGETRGLLPSAQEFECNEGQAC 158

Query: 129 FPECKGVNI-KKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEF 187
              CK + + KK +  WKR IS +K       S+  K  SE PK N+M+V+QNKK+CMEF
Sbjct: 159 VEGCKNLGMDKKTRSWWKRFISKRKGRDAASASQVSKQTSETPKINQMKVRQNKKRCMEF 218

Query: 188 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 247
           TAL   QEIQAHKG IWT+KFSPDG+YLASGGEDGVVRIW VTS  ASCK  T +G FG 
Sbjct: 219 TALCIGQEIQAHKGFIWTMKFSPDGQYLASGGEDGVVRIWCVTSTDASCKYLTTEGNFGC 278

Query: 248 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMD 307
             K+GK  FG+KK S+ PVVIPD++FQIEESPLQE HGH  DVLDLAWS SN LLS SMD
Sbjct: 279 EVKDGKSSFGRKKPSYAPVVIPDKIFQIEESPLQEFHGHASDVLDLAWSKSNSLLSSSMD 338

Query: 308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 367
           KTVR+WQVG ++CLNVF H+NYVTC+QFNP+DDNYFISGSIDGKVRIWGV E+RVVDWAD
Sbjct: 339 KTVRLWQVGHDECLNVFRHNNYVTCIQFNPVDDNYFISGSIDGKVRIWGVSERRVVDWAD 398

Query: 368 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQF 426
           VRDVI+AICY PDGKGFIVGS+TGTC FY ASGN L+L+ KV+FH RKKTSGNKITGIQF
Sbjct: 399 VRDVITAICYQPDGKGFIVGSVTGTCCFYNASGNHLQLDAKVNFHGRKKTSGNKITGIQF 458

Query: 427 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY 486
           S++ESQ++MITSEDSKLRILDG+DV++K+KGL KSGSQMSASFT+TG+HI+S+G+D RVY
Sbjct: 459 SQEESQKVMITSEDSKLRILDGIDVVYKYKGLRKSGSQMSASFTSTGRHIVSVGEDSRVY 518

Query: 487 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL 546
           VWNYD  C  SSKQ  SV+SCEHFF EGVSVA+ W   G E+K L S SLR      D+L
Sbjct: 519 VWNYDGFCSQSSKQMKSVQSCEHFFFEGVSVAIPWSDTGAEKKGLGSDSLRQSPPTQDHL 578

Query: 547 ETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQC 606
           E   WIRDSERFSLG+WFS DG CRG ATWP EKLPLW           +        Q 
Sbjct: 579 EATSWIRDSERFSLGNWFSMDGSCRGGATWPEEKLPLWGAP--------EHDHHHHDHQQ 630

Query: 607 LNNVDDVR-----AISATWGLVIVTAGCDGMIKTFHNYGLPIRL 645
               +DV+     A+S  WGLVI TAG DG I+TFHNYGLP+RL
Sbjct: 631 QQQHNDVQNHNHLALSEAWGLVIATAGWDGTIRTFHNYGLPVRL 674

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088582|emb|CBI37573.3| unnamed protein product [Vitis vinifera]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/584 (62%), Positives = 424/584 (72%), Gaps = 32/584 (5%)

Query: 74  MNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFE-----NP 128
           +N  +EN  C  RE D  ANCMVD L Q Q  +  +  EGE+ G   S  +FE       
Sbjct: 105 INCTEENSVCSGREGDVGANCMVDALNQQQSEKQNIDFEGETRGLLPSAQEFECNEGQAC 164

Query: 129 FPECKGVNI-KKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEF 187
              CK + + KK +  WKR IS +K       S+  K  SE PK N+M+V+QNKK+CMEF
Sbjct: 165 VEGCKNLGMDKKTRSWWKRFISKRKGRDAASASQVSKQTSETPKINQMKVRQNKKRCMEF 224

Query: 188 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 247
           TAL   QEIQAHKG IWT+KFSPDG+YLASGGEDGVVRIW VTS  ASCK  T +G FG 
Sbjct: 225 TALCIGQEIQAHKGFIWTMKFSPDGQYLASGGEDGVVRIWCVTSTDASCKYLTTEGNFGC 284

Query: 248 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMD 307
                       + S+ PVVIPD++FQIEESPLQE HGH  DVLDLAWS SN LLS SMD
Sbjct: 285 ------------EPSYAPVVIPDKIFQIEESPLQEFHGHASDVLDLAWSKSNSLLSSSMD 332

Query: 308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 367
           KTVR+WQVG ++CLNVF H+NYVTC+QFNP+DDNYFISGSIDGKVRIWGV E+RVVDWAD
Sbjct: 333 KTVRLWQVGHDECLNVFRHNNYVTCIQFNPVDDNYFISGSIDGKVRIWGVSERRVVDWAD 392

Query: 368 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQF 426
           VRDVI+AICY PDGKGFIVGS+TGTC FY ASGN L+L+ KV+FH RKKTSGNKITGIQF
Sbjct: 393 VRDVITAICYQPDGKGFIVGSVTGTCCFYNASGNHLQLDAKVNFHGRKKTSGNKITGIQF 452

Query: 427 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY 486
           S++ESQ++MITSEDSKLRILDG+DV++K+KGL KSGSQMSASFT+TG+HI+S+G+D RVY
Sbjct: 453 SQEESQKVMITSEDSKLRILDGIDVVYKYKGLRKSGSQMSASFTSTGRHIVSVGEDSRVY 512

Query: 487 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL 546
           VWNYD  C  SSKQ  SV+SCEHFF EGVSVA+ W   G E+K L S SLR      D+L
Sbjct: 513 VWNYDGFCSQSSKQMKSVQSCEHFFFEGVSVAIPWSDTGAEKKGLGSDSLRQSPPTQDHL 572

Query: 547 ETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQC 606
           E   WIRDSERFSLG+WFS DG CRG ATWP EKLPLW           +        Q 
Sbjct: 573 EATSWIRDSERFSLGNWFSMDGSCRGGATWPEEKLPLWGAP--------EHDHHHHDHQQ 624

Query: 607 LNNVDDVR-----AISATWGLVIVTAGCDGMIKTFHNYGLPIRL 645
               +DV+     A+S  WGLVI TAG DG I+TFHNYGLP+RL
Sbjct: 625 QQQHNDVQNHNHLALSEAWGLVIATAGWDGTIRTFHNYGLPVRL 668

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552366|ref|XP_002517227.1| WD-repeat protein, putative [Ricinus communis] gi|223543598|gb|EEF45127.1| WD-repeat protein, putative [Ricinus communis]

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/573 (59%), Positives = 427/573 (74%), Gaps = 17/573 (2%)

Query: 80  NLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPE---CKGVN 136
           NL+C  RE +SEANCM+D+++Q Q+++ +V  E E++    SV + ++   E        
Sbjct: 92  NLDCCGRESNSEANCMIDDMKQYQLDKPIVGCENENSESLTSVSECDHSDSEQYRSYDAG 151

Query: 137 IKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKP--KANKMEVKQNKKKCMEFTALYTSQ 194
            +K+K  WK  +  +K+   TC+S+  + NS+ P  + N+++VKQNKK+CMEFT +Y  Q
Sbjct: 152 KQKMKSWWKFFVQKRKQKECTCVSKISELNSDTPTIETNRIKVKQNKKRCMEFTGVYMQQ 211

Query: 195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI 254
           E++AHKG IWT+KFSPDG+YLA+GGEDG+VRIW VTSV    KSF  +  F  + KEGK 
Sbjct: 212 ELRAHKGFIWTMKFSPDGQYLATGGEDGIVRIWQVTSVNGCQKSFASEDSF--DMKEGK- 268

Query: 255 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 314
              K+K SH  VVIP+ +FQ+EESP+ E +GH  DVLDLAWSNSN LLS S DKTVR+WQ
Sbjct: 269 --SKRKMSHASVVIPERIFQLEESPVHEFYGHSSDVLDLAWSNSNCLLSSSKDKTVRLWQ 326

Query: 315 VGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA 374
           VG + CLN+F H +YVTC+QFNP+++NYFISGSIDGKVRIWGVCE+RVVDW D  DV SA
Sbjct: 327 VGSDHCLNIFHHISYVTCIQFNPVNENYFISGSIDGKVRIWGVCEQRVVDWVDAHDVTSA 386

Query: 375 ICYIPDGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDRKKTSGNKITGIQFSRDESQR 433
           ICY PDGKGF+VGSITGTC FY+ASGNDL+L  ++    RK+T+GN+ITGIQFS++  QR
Sbjct: 387 ICYQPDGKGFVVGSITGTCRFYEASGNDLQLGAEIHVQGRKRTAGNRITGIQFSQERPQR 446

Query: 434 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 493
           +MI+SEDSKLRILDGVD++HK+KGLPKSGSQMSASFT+ GKHIIS+G+DCRVYVW+YDEL
Sbjct: 447 VMISSEDSKLRILDGVDIVHKYKGLPKSGSQMSASFTSGGKHIISVGEDCRVYVWDYDEL 506

Query: 494 CFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIR 553
           C PSSK K SVRSCEHFFSEGVS+AV W G+  E K + S S+     +  + E     R
Sbjct: 507 CTPSSKHKKSVRSCEHFFSEGVSIAVPWSGMRKELKDVDSGSIH---SRMPSEEGTSRRR 563

Query: 554 DSERFSLGSWFSNDGPCRG-SATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDD 612
           DSERFSLG+WF  DGPCRG SATWP EKLP WD+ + ++  CQ    +  QQQ +     
Sbjct: 564 DSERFSLGNWFFIDGPCRGSSATWPEEKLPHWDIAM-AEEECQHQHYENFQQQLIKTHGH 622

Query: 613 VRAISATWGLVIVTAGCDGMIKTFHNYGLPIRL 645
              +   WGLVI TAG DG I+TFHNYGLP+RL
Sbjct: 623 T-TLPNAWGLVIATAGWDGTIRTFHNYGLPVRL 654

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131190|ref|XP_002328477.1| predicted protein [Populus trichocarpa] gi|222838192|gb|EEE76557.1| predicted protein [Populus trichocarpa]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/567 (59%), Positives = 415/567 (73%), Gaps = 15/567 (2%)

Query: 86  REMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPE-CKGVNIKK--VKK 142
           RE +SEANC++D++ +D+M++  V  E E+ G    +   E    E CK  +  K  +K 
Sbjct: 96  REENSEANCVIDQMSKDKMDKSDVASENENIGPLLDLQGCEQCEEEKCKKCDSGKSIMKS 155

Query: 143 LWKRIISM-KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKG 201
            WK  +   K+  V  C+S   K ++E PK N+ +VKQNKK CMEFT +Y  QEIQAHKG
Sbjct: 156 WWKHFLKKSKEERVGRCVSGVSKLDTEAPKTNRTKVKQNKKGCMEFTGVYMRQEIQAHKG 215

Query: 202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK-FGKKK 260
            IWT+KFSPDG+YLA+GGED ++R+W VT V +SCKSF  +G   SN KE K      KK
Sbjct: 216 FIWTMKFSPDGQYLATGGEDRIIRVWRVTLVDSSCKSFPSEGHCDSNLKEAKSNNLSTKK 275

Query: 261 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC 320
             +  VVIP++VFQIEE+PLQE HGH  ++LDLAWS+SN+LLS SMDKTVR+W++GCN  
Sbjct: 276 RMYSSVVIPEKVFQIEETPLQEFHGHASEILDLAWSDSNHLLSSSMDKTVRLWRLGCNHS 335

Query: 321 LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD 380
           LN+F H NYVTC+QFNP+D NYFISGSIDGKVRIWGV EKRVV W DVRDVISAI Y PD
Sbjct: 336 LNIFRHSNYVTCIQFNPVDKNYFISGSIDGKVRIWGVSEKRVVHWTDVRDVISAISYQPD 395

Query: 381 GKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 439
           G+GF+VG+I GTC FY+ SG DL+LE +V    R++TSGN+IT IQFS++   R+MITSE
Sbjct: 396 GRGFVVGTIKGTCRFYEVSGTDLQLEAEVHIQGRRRTSGNRITSIQFSQEICPRVMITSE 455

Query: 440 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK 499
           DSK+R+ DGVD+++KFKGLPKSGSQMSASFT+ G+HIIS+G+DCRVYVWNYD LC   SK
Sbjct: 456 DSKVRVFDGVDIVNKFKGLPKSGSQMSASFTSNGRHIISVGEDCRVYVWNYDGLCTSWSK 515

Query: 500 QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFS 559
              SV+SCE FFSEGVSVAV W G GTE + L   S R  ++     ETA W +DSERFS
Sbjct: 516 HIKSVKSCEFFFSEGVSVAVPWSGTGTEVRGL--GSRRSLTE-----ETASWRKDSERFS 568

Query: 560 LGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISA 618
           LGSWF  DG CRGS ATWP EKLP+WDV +    Y     +   QQQC+N+ D + ++S 
Sbjct: 569 LGSWFFMDGRCRGSYATWPEEKLPMWDVPVLDAEYQNQQIKSLHQQQCVNSNDHI-SLSE 627

Query: 619 TWGLVIVTAGCDGMIKTFHNYGLPIRL 645
            WGLVIVTAG DG I+ FHNYGLPI L
Sbjct: 628 AWGLVIVTAGWDGKIRAFHNYGLPIML 654

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461887|ref|XP_004148673.1| PREDICTED: uncharacterized protein LOC101207772 [Cucumis sativus] gi|449507515|ref|XP_004163054.1| PREDICTED: uncharacterized LOC101207772 [Cucumis sativus]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 302/522 (57%), Positives = 378/522 (72%), Gaps = 12/522 (2%)

Query: 132 CKGVNIKKVKKL--WKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTA 189
           C+  ++ K K L  WK   +   R      S + + NS K ++ +M+V Q+KK+C EF+A
Sbjct: 151 CQDADVGKRKILTWWKSFKNKAARRRSADFSRESELNSPKSQSCRMKVYQHKKRCSEFSA 210

Query: 190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA 249
           LY  Q+I AHKG IWT+KFSPDG+YLASGGEDGVVRIW VT   AS +   DDG + +  
Sbjct: 211 LYMRQQICAHKGLIWTMKFSPDGKYLASGGEDGVVRIWRVTYANASSEFLADDGNYNTKP 270

Query: 250 KEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKT 309
           KEGK  F  K      VVIP++VFQI+E P+QELHGH  D+LD+AWS SN LLS S DKT
Sbjct: 271 KEGKSSFSSKPLRFATVVIPEKVFQIDELPIQELHGHSSDILDIAWSTSNCLLSSSKDKT 330

Query: 310 VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR 369
           VR+WQV  +QCLNVF H NYVTCVQFNP+D+N+F+SGSIDGK+RIWGV ++RVVDWAD+R
Sbjct: 331 VRLWQVSSDQCLNVFHHKNYVTCVQFNPMDENFFVSGSIDGKIRIWGVKKQRVVDWADIR 390

Query: 370 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSR 428
           DVI+A+ Y PDGKGF VGSITGTC FY+ SG+ L L  +++   RKK SG +ITGIQF R
Sbjct: 391 DVITAVSYRPDGKGFAVGSITGTCRFYETSGDYLHLSAQINVQGRKKASGKRITGIQFFR 450

Query: 429 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 488
           + SQR+MITSEDSK+RI +G ++IHK+KGLPKSGSQMSASFT  GKHI+S+G+D RVY+W
Sbjct: 451 ENSQRVMITSEDSKVRIFEGTEIIHKYKGLPKSGSQMSASFTKNGKHIVSVGEDSRVYMW 510

Query: 489 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET 548
           NYD L  PSSK+  S +SCEHFFS+GVSVA+ W G+GTE     ++     ++K +    
Sbjct: 511 NYDSLFLPSSKEAKSQQSCEHFFSDGVSVAIPWSGVGTEPNCFSNNQALFSNRK-NYQRA 569

Query: 549 APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI--DSDGYCQDPQQQRLQQQC 606
           A W R+++RFSL +WFS DG  RGSATWP E+LPLWD+ I  D +G     Q     Q+ 
Sbjct: 570 ASWTRETDRFSLSNWFSADGLFRGSATWPEERLPLWDLPITEDENGSL---QHHDCHQKK 626

Query: 607 LNNVDDVRAISA---TWGLVIVTAGCDGMIKTFHNYGLPIRL 645
           LN+  D     +   TWGLV+V AG DG IKTFHNYGLPI+L
Sbjct: 627 LNSHRDAHNDGSQLETWGLVMVVAGLDGTIKTFHNYGLPIKL 668

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511161|ref|XP_003524298.1| PREDICTED: WD repeat-containing protein 44-like [Glycine max]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 300/566 (53%), Positives = 393/566 (69%), Gaps = 21/566 (3%)

Query: 90  SEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKF-------ENPFPECKGVNIKKVKK 142
           S+    +DE +    +E    ++G+ + FS + ++        +  F +   ++ +K K 
Sbjct: 121 SKEKISLDEFKGCPQDEAEANIQGKEHEFSSTAEEHRPREAVSQEEFQDFD-MSKRKRKN 179

Query: 143 LWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGC 202
            WKR ++++K       S   K N+   K  +++V+QNKK+ +EF+ LY  QE++AHKG 
Sbjct: 180 WWKRFVNIRKSGEGNVRS---KLNAGTNKTRRIKVRQNKKRWLEFSGLYLGQEVRAHKGL 236

Query: 203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 262
           +WT+KFSP G+YLASGGEDGVVRIW VTS+  S   FT +     +  E      +KK S
Sbjct: 237 VWTMKFSPCGQYLASGGEDGVVRIWCVTSLDKSSICFTPEDSTSKSKVECDNSSPRKKHS 296

Query: 263 HVPVV-IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL 321
             P + +P+ VFQIEESPLQE  GH  DVLDLAWSNS+ LLS SMDKTVR+WQ+GCNQCL
Sbjct: 297 SQPFIFLPNSVFQIEESPLQEFFGHSNDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCL 356

Query: 322 NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDG 381
           NVF H++YVTC+QFNP+D+NYFISGSIDGKVRIWG+ E+RV+DWAD+RD ISAI Y  DG
Sbjct: 357 NVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWADIRDAISAISYQQDG 416

Query: 382 KGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 440
           KGF+VGS+TGTC FY ASG   +LE ++D H +KK SGNKITGIQFS+  SQRIMITSED
Sbjct: 417 KGFVVGSVTGTCCFYVASGTYFQLEAQIDVHGKKKASGNKITGIQFSQKNSQRIMITSED 476

Query: 441 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 500
           SK+ + DG++++ K++GLPKSG QMS+SFT++GKHIIS+G+D  VY+WN+D++   SSKQ
Sbjct: 477 SKICVFDGIELVQKYRGLPKSGCQMSSSFTSSGKHIISVGEDSHVYIWNFDDMGNASSKQ 536

Query: 501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQK-SLCSSSLRDCSQKWDNLETAPWIRDSERFS 559
             S RSCE+FFS+GV+VA+   G+  +++ S  + S          LE A   RD +RFS
Sbjct: 537 TKSERSCEYFFSKGVTVAIPRSGMKADKRDSSGNYSHHSSEMPTQQLEVASEARDHKRFS 596

Query: 560 LGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISAT 619
           LG+WF+ DG CRGS TWP EKLP WD+ I  D Y         QQ C  +    R +S T
Sbjct: 597 LGNWFAIDGTCRGSMTWPEEKLPSWDLPITEDEYGH-------QQLCYKDNCHGRNVSET 649

Query: 620 WGLVIVTAGCDGMIKTFHNYGLPIRL 645
           WGL IV AGCDG IKTFHN+GLP+RL
Sbjct: 650 WGLSIVAAGCDGTIKTFHNFGLPVRL 675

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528542|ref|XP_003532860.1| PREDICTED: uncharacterized protein LOC100806747 [Glycine max]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 300/551 (54%), Positives = 387/551 (70%), Gaps = 28/551 (5%)

Query: 104 MNECVVTLEGESNGFSQSVDKFE----NPFPECKGVNI--KKVKKLWKRIISMKKRNVET 157
           M E     +G+ + FS + ++      +   E +  N+  +K K  WKR ++++K     
Sbjct: 86  MYEADANFQGKVHEFSSTAEEHRPREADSQEEFQDFNMSKRKRKNWWKRFVNIRKGG--- 142

Query: 158 CMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLAS 217
                 + N+   K  +++V+QNKK+ +EF+ LY  QE++AHKG IW +KFSP G+YLAS
Sbjct: 143 ------EGNAGTNKTRRIKVRQNKKRWLEFSGLYLGQEVRAHKGLIWKMKFSPCGQYLAS 196

Query: 218 GGEDGVVRIWHVTSV-AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 276
           GGEDGVV IW VTS+  +S  S T+D    S  +        K SS   + +P+ +FQIE
Sbjct: 197 GGEDGVVCIWRVTSLDKSSICSTTEDSTSNSKVECDNSSPRNKHSSQPFIFLPNSIFQIE 256

Query: 277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN 336
           ESPLQE  GH  DVLDLAWSNS+ LLS SMDKTVR+WQ+GCNQCLNVF H++YVTC+QFN
Sbjct: 257 ESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCLNVFHHNDYVTCIQFN 316

Query: 337 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFY 396
           P+D+NYFISGSIDGKVRIWG+ E+RV+DWAD+RDVISAI Y  DGKGF+VGS+TGTC FY
Sbjct: 317 PVDENYFISGSIDGKVRIWGIREERVIDWADIRDVISAISYQQDGKGFVVGSVTGTCCFY 376

Query: 397 KASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF 455
            ASG   +LE ++D H +KK SGNKITGIQFS+  SQRIMITSEDSK+ I DG +++ K+
Sbjct: 377 VASGTYFQLEAQIDVHGKKKVSGNKITGIQFSQKNSQRIMITSEDSKICIFDGTELVQKY 436

Query: 456 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV 515
           KGLPKSGSQMS SFT++GK+IIS+G+D  VY+WN+D++   SSKQ  S RSCE+FFS+GV
Sbjct: 437 KGLPKSGSQMSGSFTSSGKNIISVGEDSHVYIWNFDDMGNASSKQTKSERSCEYFFSKGV 496

Query: 516 SVAVQWPGIGTEQK-SLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSA 574
           +VA+ W G+  +Q+ S  + S R        LE AP  RD E FSLG+WF+ DG CRGS 
Sbjct: 497 TVAIPWSGMKADQRDSSGNYSHRSSEMPTQQLEVAPETRDHELFSLGNWFTTDGSCRGSM 556

Query: 575 TWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIK 634
           TWP EKLP WD+ I      ++ QQ   +  C +     R++S TWGL IV AGCDG IK
Sbjct: 557 TWPEEKLPSWDLPI-----AEEDQQLSHKDNCHD-----RSVSETWGLSIVAAGCDGTIK 606

Query: 635 TFHNYGLPIRL 645
           TFHN+GLP+RL
Sbjct: 607 TFHNFGLPVRL 617

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518745|ref|XP_003528038.1| PREDICTED: uncharacterized protein LOC100801576 [Glycine max]

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/509 (56%), Positives = 358/509 (70%), Gaps = 11/509 (2%)

Query: 138 KKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQ 197
           K+ K  WK  IS KK       S   K NS   K  ++ V+QNKK+ ME +ALY  QEI+
Sbjct: 167 KEKKNWWKHFISSKKGGGGKVRS---KLNSSTNKTRRINVRQNKKRWMELSALYIGQEIR 223

Query: 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 257
           AHKG IWT+KFSP+G+YLASGGEDGV+RIW V ++  S   F  +    +  K       
Sbjct: 224 AHKGLIWTMKFSPNGQYLASGGEDGVIRIWRVKTLNTSSICFNAEDSAANKVKHDFSSSQ 283

Query: 258 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC 317
           KK SS   VV+P ++F+IEESPL E  GH  DVLDLAWSNS+ LLS S DKTVR+W++GC
Sbjct: 284 KKHSSQSFVVLPSKIFKIEESPLHEFSGHASDVLDLAWSNSDTLLSSSSDKTVRLWKIGC 343

Query: 318 NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICY 377
           +QCL+VF H +YVTC+QFNP+D+NYFISGSIDGKVRIWG+ E+RVVDWAD+RDVISAI Y
Sbjct: 344 SQCLSVFHHKDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISY 403

Query: 378 IPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMI 436
            PDGKGF+VGS+ GTC FY ASG   +LE K+  + +K TSGNKITGIQFS+   QR+MI
Sbjct: 404 RPDGKGFVVGSLPGTCRFYVASGKHFQLETKIHVNGKKSTSGNKITGIQFSQKNHQRVMI 463

Query: 437 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 496
           TSEDS++RIL+G + +  +KGLP+SGSQMS SFT+ G+HI+S+G D RVY+WN+++L   
Sbjct: 464 TSEDSRVRILEGTEFVQTYKGLPRSGSQMSGSFTSGGEHIVSVGGDSRVYIWNFNDLGNA 523

Query: 497 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSE 556
           SSKQ  S  SCEHF SEGV+VA+ W  +  E++S  S+     S     LE +  +R+SE
Sbjct: 524 SSKQTKSKYSCEHFGSEGVTVALPWSCMSAEEQSGSSNDFAHHSSSQHQLEASHGVRESE 583

Query: 557 RFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAI 616
           RFS GSWFS DG CRGS TWP E LP WD+ +    +         Q+ C  +    + +
Sbjct: 584 RFSFGSWFSIDGSCRGSVTWPEETLPRWDLPLVEVEFDH-------QKLCTKDPSHEKHV 636

Query: 617 SATWGLVIVTAGCDGMIKTFHNYGLPIRL 645
           S TWGL IV AGCDG IKTFHN+GLPIRL
Sbjct: 637 SETWGLSIVAAGCDGTIKTFHNFGLPIRL 665

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507482|ref|XP_003522494.1| PREDICTED: uncharacterized protein LOC100780979 [Glycine max]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 297/565 (52%), Positives = 384/565 (67%), Gaps = 17/565 (3%)

Query: 87  EMDSEANCMVDELEQDQMNE-CVVTLEGESNGFSQSVDKFENPFPE-CKGVNI--KKVKK 142
           E  SEA  + DE +    +E C      E +   Q V   +   PE C G ++  K+ K 
Sbjct: 115 EATSEAQALFDEHKGCPKDESCFEGKVYEVSCTDQEVRHRKVEVPEKCLGFDMGEKEKKN 174

Query: 143 LWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGC 202
            WK  IS KK       S   K NS   K  ++ V+QNKK+ MEF+ALY  QEI+AH+G 
Sbjct: 175 WWKHFISSKKGGGGKFRS---KLNSTTNKTRRINVRQNKKRWMEFSALYIGQEIRAHEGL 231

Query: 203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG-KIKFGKKKS 261
           IWT+KFSP+G+YLASGGEDGV+RIW V ++  S      +    S  K        K  S
Sbjct: 232 IWTMKFSPNGQYLASGGEDGVIRIWRVKTLNTSSICLNAEDSAASKVKHDFSSSQKKHSS 291

Query: 262 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL 321
               +V+P+++F+IEESPL E +GH  DVLDLAWS+S+ LLS S DKTVR+W++GC+QCL
Sbjct: 292 QSSFIVLPNKIFKIEESPLHEFYGHASDVLDLAWSSSDTLLSSSSDKTVRLWKIGCSQCL 351

Query: 322 NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDG 381
           +VF H +YVTC+QFNP+D+NYFISGSIDGKVRIWG+ E+RVVDWAD+RDVISAI Y PD 
Sbjct: 352 SVFYHKDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISYRPDA 411

Query: 382 KGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 440
           KGF+VGS+TGTC FY ASG   +LE K+  + +K+TSGNKITGIQFS+   QR+MITS+D
Sbjct: 412 KGFVVGSLTGTCRFYVASGKYFQLETKIRVNGKKRTSGNKITGIQFSQKNHQRVMITSDD 471

Query: 441 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 500
           SK+RIL+G++++  +KGL +SGSQMS SFT+ G+HIIS+G D RVY+WN+++    SSKQ
Sbjct: 472 SKVRILEGIELVQTYKGLSRSGSQMSGSFTSGGEHIISVGGDSRVYIWNFNDSGNASSKQ 531

Query: 501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSL 560
             S  SCEHF SEGV++A+ W G+  E++S  S+     S +   LE +  +R+SERFS 
Sbjct: 532 TKSNYSCEHFGSEGVTIAIPWSGMSAEERSGSSNDFTHYSSQ-HQLEASHGVRESERFSF 590

Query: 561 GSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATW 620
           GSWFS DG CRGS TWP EKLP WD+ +    +         Q+ C  +    + +S TW
Sbjct: 591 GSWFSIDGSCRGSVTWPEEKLPSWDLPLVEVEFDH-------QKLCTKDPSHEKHVSETW 643

Query: 621 GLVIVTAGCDGMIKTFHNYGLPIRL 645
           GL IV AGCDG IKTFHN+GLPIRL
Sbjct: 644 GLSIVAAGCDGTIKTFHNFGLPIRL 668

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093348|ref|XP_002309892.1| predicted protein [Populus trichocarpa] gi|222852795|gb|EEE90342.1| predicted protein [Populus trichocarpa]

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 266/449 (59%), Positives = 323/449 (71%), Gaps = 47/449 (10%)

Query: 86  REMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWK 145
           RE +SEANCMVDE+    M++     E E+ G S               V++++      
Sbjct: 96  REENSEANCMVDEILPFSMDKPGAASENENIGPS---------------VHLRQ------ 134

Query: 146 RIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWT 205
                                   PK N+ +VKQNKK  MEF+ +Y  QEIQAHKG IWT
Sbjct: 135 ----------------------GSPKTNRTKVKQNKKGFMEFSGVYMGQEIQAHKGFIWT 172

Query: 206 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 265
           +KFSPDG+YLA+GGED ++RIW VTSV +SCKSF+ +G   SN KEGK     KK  H  
Sbjct: 173 MKFSPDGQYLATGGEDRIIRIWRVTSVDSSCKSFSSEGHSDSNLKEGKSSLRTKKRMHSS 232

Query: 266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 325
           VVIP++VFQIEE+PLQE HGH  ++LDLAWS+SN+LLS SMDKTVR+W VGCN CL +F 
Sbjct: 233 VVIPEKVFQIEETPLQEFHGHTSEILDLAWSDSNHLLSSSMDKTVRLWLVGCNYCLGIFH 292

Query: 326 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 385
           H +YVTC+QFNP+D+NYFISGSIDGKVR+WGV EKRVV WADVRDVISAICY PDG+GF+
Sbjct: 293 HSSYVTCIQFNPVDENYFISGSIDGKVRVWGVSEKRVVHWADVRDVISAICYQPDGRGFV 352

Query: 386 VGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 444
           VG+I G+C FY+ SG DL+LE ++    R + SGN+ITGIQ   +   R+MITSEDSK+R
Sbjct: 353 VGTIIGSCRFYEVSGTDLQLEAEIHIQGRNRNSGNRITGIQ---EICPRVMITSEDSKVR 409

Query: 445 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 504
           + DGVDV++KFKGLPKSGSQMSASFT+ G+HIIS+G+DCRVYVWNYD LC P SK   SV
Sbjct: 410 VFDGVDVVNKFKGLPKSGSQMSASFTSKGRHIISVGEDCRVYVWNYDGLCTPWSKHTKSV 469

Query: 505 RSCEHFFSEGVSVAVQWPGIGTEQKSLCS 533
           RSCE+FFSEGVSVAV W G GTE + L S
Sbjct: 470 RSCEYFFSEGVSVAVPWSGPGTELRGLSS 498

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	645
TAIR|locus:2169769	698	AT5G24320 "AT5G24320" [Arabido	0.541	0.5	0.450	8.6e-100
TAIR|locus:2028539	593	AT1G48870 [Arabidopsis thalian	0.522	0.568	0.512	1.8e-99
TAIR|locus:2153443	825	AT5G54200 "AT5G54200" [Arabido	0.572	0.447	0.412	4.3e-97
TAIR|locus:2165700	709	AT5G42010 "AT5G42010" [Arabido	0.555	0.504	0.438	6.2e-93
TAIR|locus:2181733	905	AT5G02430 "AT5G02430" [Arabido	0.393	0.280	0.455	2.6e-90
TAIR|locus:2168606	654	AT5G53500 "AT5G53500" [Arabido	0.409	0.403	0.520	4.4e-90
TAIR|locus:2090146	883	AT3G15470 "AT3G15470" [Arabido	0.582	0.425	0.404	1.5e-87
TAIR|locus:2019494	647	AT1G64610 "AT1G64610" [Arabido	0.393	0.392	0.505	3.9e-87
TAIR|locus:2040731	903	AT2G37670 "AT2G37670" [Arabido	0.596	0.426	0.391	4.1e-87
WB|WBGene00006369	1043	sym-4 [Caenorhabditis elegans	0.506	0.313	0.333	1.9e-47

TAIR|locus:2169769 AT5G24320 "AT5G24320" [Arabidopsis thaliana (taxid:3702)]

 Score = 812 (290.9 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
 Identities = 176/391 (45%), Positives = 238/391 (60%)

Query:   266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 325
             V+IP ++F++ + PL E  GH GD+LD++WS +N LLS S+D +VR+WQ+GC  CL +F 
Sbjct:   335 VIIPPKIFRVLDKPLHEFLGHSGDILDISWSKNNRLLSASVDNSVRLWQIGCEDCLGIFS 394

Query:   326 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 385
             H+NYVT VQFNP+DD++FISGSIDGKVRIW   + +VVDWAD R +++A+CY PDG+  I
Sbjct:   395 HNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQCQVVDWADARGIVTAVCYQPDGQAVI 454

Query:   386 VGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQF-----SRDESQRIMITSE 439
             +G++T  C FY  SG+ L+L+  +  H++KK+S  +I G QF     S D S R+M+ S 
Sbjct:   455 IGTLTSDCRFYNVSGHCLQLDGHICLHNKKKSSNKRIIGFQFLLQFDSTDPS-RVMVASA 513

Query:   440 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN---YD-ELCF 495
             DS++RI+ G +V+HK+KG   +G+Q+SASFT  GKHI+S  DD  VYVWN   +D E   
Sbjct:   514 DSQVRIISGRNVVHKYKGSRNAGNQISASFTADGKHIVSACDDSSVYVWNCVGHDPEQSS 573

Query:   496 P---SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWI 552
             P   S  ++  +RS E F S  VSVA+ W G       L   S           E +P +
Sbjct:   574 PGFFSHTKRLKIRSFEKF-SADVSVAIPWCGF---TPVLSGGS-----------ELSPSL 618

Query:   553 RDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCXXXXXXXXXXXCLNNVDD 612
                  FSLG  +  D P +GSATWP EKL      + +               C    + 
Sbjct:   619 -----FSLGREYVLDSP-KGSATWPEEKLASSFSPVKA---IRRSHYKFLRSSCRRTSES 669

Query:   613 VRAISATWGLVIVTAGCDGMIKTFHNYGLPI 643
                 S  WGLVIVT G DG IK FHNYGLP+
Sbjct:   670 ----SHLWGLVIVTGGWDGRIKLFHNYGLPV 696

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR|locus:2028539 AT1G48870 [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
 Identities = 185/361 (51%), Positives = 235/361 (65%)

Query:   164 KPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGV 223
             K  S +   +K++VK NKK  +E +A Y  Q+I  HKG IWTLKFSPDG+YLA+GGEDGV
Sbjct:   162 KYKSSEETMSKVKVKTNKKSHVELSAAYMVQKINGHKGKIWTLKFSPDGKYLATGGEDGV 221

Query:   224 VRIWHVTSVAASCKSFT-DDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQE 282
             V+IW +T   +   SF          A                V+ P + F IEE+P QE
Sbjct:   222 VKIWRITLSDSLLASFLRQQEPINQQAAL--------------VLFPQKAFHIEETPFQE 267

Query:   283 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 342
             L+GH GDVLDLAWS+SN LLS S DKTVR+W+ GC+QCL+VF H+NYVTCV+FNP++ N 
Sbjct:   268 LYGHTGDVLDLAWSDSNLLLSASKDKTVRLWRTGCDQCLHVFHHNNYVTCVEFNPVNKNN 327

Query:   343 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 402
             F SGSIDGK RIWG+ E+RVV W DVRD ISAI Y P+G GF+VG ITG C FY+   ND
Sbjct:   328 FASGSIDGKARIWGLSEERVVAWTDVRDSISAISYQPNGNGFVVGCITGNCRFYQILDND 387

Query:   403 LKL-EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS 461
             + + E++    R     N+IT ++F    S++I+++SEDSK+RI D   +IHKFK     
Sbjct:   388 VIMDEQILIRGR-----NRITAVEFCPGSSEKILVSSEDSKVRIFDKTQMIHKFKAPSNF 442

Query:   462 GSQMSASF-TTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ 520
             G Q SASF ++TGKHI+S+     VY+WN D   FPS K   S RS E+F S GVS    
Sbjct:   443 GRQSSASFVSSTGKHILSVRRGVGVYLWNND--AFPSRKGAKSSRSFEYFHSPGVSAVAA 500

Query:   521 W 521
             W
Sbjct:   501 W 501

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

TAIR|locus:2153443 AT5G54200 "AT5G54200" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 4.3e-97, Sum P(3) = 4.3e-97
 Identities = 161/390 (41%), Positives = 227/390 (58%)

Query:   266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 325
             V++P+ VF + E P+    GH  DVLDL+WS S +LLS SMDKTVR+W +    CL VF 
Sbjct:   447 VLVPEAVFGLSEKPVCSFVGHLDDVLDLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFS 506

Query:   326 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 385
             H +YVTC+QFNP+DDNYFISGS+D KVRIW + + +VVDW D+ ++++A CY PDG+G +
Sbjct:   507 HSDYVTCIQFNPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTPDGQGAL 566

Query:   386 VGSITGTCHFYKASGNDLKLEK-VDFHDRKK-TSGNKITGIQFSRDESQRIMITSEDSKL 443
             VGS  GTC  Y    N L+  + ++  +RKK T   KITG QF    S  +++TS DS+ 
Sbjct:   567 VGSYKGTCCLYNTHDNKLQQRREINLKNRKKKTHHKKITGFQFVAGSSSEVLVTSADSRT 626

Query:   444 RILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD-ELCFPSSKQKN 502
             R++DGVD++HKFKG   + SQ+SAS T+ GK ++S  +D  VYVWNYD +     SK+  
Sbjct:   627 RVVDGVDLVHKFKGFRNTNSQISASLTSNGKFLVSASEDSNVYVWNYDSDSRAGRSKRVT 686

Query:   503 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRD---SERFS 559
                S E+F+   VSVA  WPG  +   +  ++S    S   +N    P + D   ++  +
Sbjct:   687 VTNSYENFYCRDVSVAAPWPGKISNNHT--NNSPEQSSFTANNNPPTP-VNDPTNNKTVT 743

Query:   560 LGSWFSNDGPC---RGSATWPAEKLPLWDVTIDSDGYCXXXXXXXXXXXCLNNVD-DVRA 615
              G   S        R SATWP EKL L                       ++N+  + + 
Sbjct:   744 NGIISSATNRYFFDRVSATWPEEKLLL--------AAKNRARTSPRVSVDMSNIQVNTKP 795

Query:   616 ISATWGLVIVTAGCDGMIKTFHNYGLPIRL 645
              ++ W +VIVT    G I+ F N+G P+RL
Sbjct:   796 SASAWSMVIVTGSLRGEIRIFQNFGFPVRL 825

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2165700 AT5G42010 "AT5G42010" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 6.2e-93, Sum P(2) = 6.2e-93
 Identities = 170/388 (43%), Positives = 238/388 (61%)

Query:   267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-QCLNVFD 325
             V+P +VF I E+P  E  GH G++LDL+WS   +LLS S+D+TVR+W+VG + +C+ VF 
Sbjct:   343 VLPSKVFSISETPQHEFRGHTGEILDLSWSEKGFLLSSSVDETVRLWRVGSSDECIRVFS 402

Query:   326 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 385
             H ++VTCV FNP+DDNYFISGSIDGKVRIW V + RVVD+ D+R +++A+CY PDGKG +
Sbjct:   403 HKSFVTCVAFNPVDDNYFISGSIDGKVRIWDVSQFRVVDYTDIRQIVTALCYRPDGKGAV 462

Query:   386 VGSITGTCHFYKASGNDLKLEK-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 444
             VGS+TG C FY  + N L+L++ +  H +KK    +ITG QF   +S ++M+TS DS++R
Sbjct:   463 VGSMTGECRFYHTTDNQLQLDRDISLHGKKKVPNKRITGFQFFPGDSDKVMVTSADSQIR 522

Query:   445 ILDGVDVIHKFKGLPKSGSQ-MS---ASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 500
             I+ GVD I K K      +  MS   ASFT+ GKHI+S  ++  ++VW++ +    +S Q
Sbjct:   523 IICGVDTICKLKKASSLRTTLMSPTFASFTSDGKHIVSTIEESGIHVWDFSQPNKKASSQ 582

Query:   501 K-NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFS 559
             K  ++RS E F S  VSVA+ W G G E      S + D  + + +    P   D     
Sbjct:   583 KPKTIRSYEGFLSRNVSVAIPWLGQGKED-----SIIADLEKSFAHF---PVPLD----- 629

Query:   560 LGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCXXXXXXXXXXXCLNNV-DDVRAISA 618
                +FS   P +G+ TWP EKL +  V   +                L +V  +V   + 
Sbjct:   630 ---YFS---PMKGATTWPEEKLGV--VAGTAAAAVSATVSSRSKLRLLKSVCQNVHGSTP 681

Query:   619 -TWGLVIVTAGCDGMIKTFHNYGLPIRL 645
               WGLVIVTA  DG I+ FHNYGLPIR+
Sbjct:   682 HLWGLVIVTATWDGSIRVFHNYGLPIRV 709

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2181733 AT5G02430 "AT5G02430" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 2.6e-90, Sum P(4) = 2.6e-90
 Identities = 119/261 (45%), Positives = 169/261 (64%)

Query:   269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN 328
             P+ VF + + P+    GH  DVLDL+WS S  LLS SMDKTVR+W +    CL +F H++
Sbjct:   501 PETVFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLKLFAHND 560

Query:   329 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 388
             YVTCVQFNP+D++YFISGS+D K+RIW +  ++VV+W D++++++A+CY PDG+   VGS
Sbjct:   561 YVTCVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKEMVTAVCYTPDGQAAFVGS 620

Query:   389 ITGTCHFYKASGNDLKLEK---VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 445
             I G C  Y A   D KLE+   +D  ++KK    KIT  QFS      +++TS DS++R+
Sbjct:   621 INGHCRLYSAE--DCKLEQTNQIDLQNKKKAQAKKITAFQFSPINPSEVLVTSADSRIRV 678

Query:   446 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE--LCFPSSKQKNS 503
             LDG +++ KF+G     SQM+AS+T   KHI+   +D +VYVW ++E  L     K    
Sbjct:   679 LDGTELVQKFRGFKNMNSQMTASYTVDAKHIVCASEDSQVYVWKHEEPRLGITGRKTVTM 738

Query:   504 VRSCEHFFSEGVSVAVQWPGI 524
               S E F  + VSVAV W G+
Sbjct:   739 CTSYETFPCKDVSVAVPWNGV 759

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2168606 AT5G53500 "AT5G53500" [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
 Identities = 141/271 (52%), Positives = 190/271 (70%)

Query:   266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 325
             VV P +VF+I E PL E  GH G+VLD++WS  NYLLS SMDKTVR+W+VG N CL VF 
Sbjct:   307 VVFPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCLGVFA 366

Query:   326 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 385
             H++YVT VQFNP+++NYF+SGSIDGKVRIW +    VVDWAD++D+ISA+CY PDG+G I
Sbjct:   367 HNSYVTSVQFNPVNENYFMSGSIDGKVRIWNISGCSVVDWADLKDIISAVCYRPDGQGGI 426

Query:   386 VGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 444
             +GS+ G+C F+  SG  L+L+ ++  H++KK+S  +ITG QF   E  ++++ S DSK+R
Sbjct:   427 IGSLNGSCRFFNMSGEFLELDSQIHLHNKKKSSNKRITGFQFLPQEPTKVLVVSADSKVR 486

Query:   445 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 504
             IL G +V+ K+KG+ K+ S  SAS T+ GKHI+S  +D  VY+W+ DE     S+ K  +
Sbjct:   487 ILQGNNVVRKYKGVCKTRSLTSASLTSDGKHIVSACEDSNVYIWSNDE----ESETKK-I 541

Query:   505 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS 535
             RS E F S   SVA  W G      +L  SS
Sbjct:   542 RSFERF-SANASVAATWCGFSDHNTTLPFSS 571

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2090146 AT3G15470 "AT3G15470" [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 1.5e-87, Sum P(2) = 1.5e-87
 Identities = 161/398 (40%), Positives = 234/398 (58%)

Query:   174 KMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA 233
             ++ V+Q  K   E TALY +QEIQAH G IW++KFS DG+YLAS GED ++ IW V    
Sbjct:   387 RVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCIIHIWQVVEAE 446

Query:   234 ASCKSFTD---------DGGFGSNAXXXXXXXXXXXS----SHVPVVIPDEVFQIEESPL 280
                +   D         +G                 S    S   + +PD +F + E P 
Sbjct:   447 KKGELLLDRPELLLLATNGSPEPTTMSPRRRGRTSISRKSLSLENIFVPDSLFGLSEKPF 506

Query:   281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD 340
                 GH  DVLDLAWS S +LLS SMDKTVR+W +    CL VF H +YVTC+QFNP+DD
Sbjct:   507 CSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQFNPVDD 566

Query:   341 NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 400
              YFISGS+D KVR+W + +++VVDW D+ +++++ CY PDG+G +VGS  G+C  Y AS 
Sbjct:   567 RYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQGVLVGSYKGSCRMYSASD 626

Query:   401 NDLKLE-KVDFHDRKKTSGNK-ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL 458
             N L+ + +++  ++KK +  K ITG QF    S  +++TS DS++R++DG D+++K KG 
Sbjct:   627 NKLQQKSQINLQNKKKKAHQKKITGFQFVPGSSSEVLVTSSDSRIRVVDGTDLVNKLKGF 686

Query:   459 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS-----VRSCEHFFSE 513
               + SQ+SAS T  GK+++S  +D  VY+W Y+      S+  N+       S EHF S+
Sbjct:   687 RNTSSQISASITADGKYVVSASEDSHVYIWKYESPASRPSRSNNNKNVTVTNSYEHFHSQ 746

Query:   514 GVSVAVQWPGIGTEQK--SLCSSSLRDCSQKWDNLETA 549
              VS A+ WPG+ + +   +   +     +   DN+ TA
Sbjct:   747 DVSAAISWPGMASTENWGTQNRAGFNGSTNNLDNISTA 784

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2019494 AT1G64610 "AT1G64610" [Arabidopsis thaliana (taxid:3702)]

 Score = 715 (256.8 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
 Identities = 132/261 (50%), Positives = 182/261 (69%)

Query:   266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD 325
             VV+P  +F I E PL E  GH G++LDL+WS   YLLS S+D+TVR+W+VGC++CL  F 
Sbjct:   301 VVLPPTIFSISEKPLHEFKGHIGEILDLSWSEKGYLLSSSVDETVRLWRVGCDECLRTFT 360

Query:   326 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 385
             H+N+VTCV FNP+DDNYFISGSIDGKVRIW V   RVVD+ D+RD+++A+CY PD KG +
Sbjct:   361 HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDVTRCRVVDYTDIRDIVTAVCYRPDAKGAV 420

Query:   386 VGSITGTCHFYKASGNDLKLEK-VDFHDRKKTSGNKITGIQF--SRDESQRIMITSEDSK 442
             +GS+TG C FY    N L++++ ++ H +KK +  +I+G+Q+  S  +S ++M+TS DS+
Sbjct:   421 IGSMTGNCRFYHIFENQLQMDQEINVHGKKKVASKRISGLQYLPSDSDSDKVMVTSADSQ 480

Query:   443 LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF--PSSKQ 500
             +RI+ G DVI K K    S    SASF + GKHIIS  +D  + VW+Y +L    P S+ 
Sbjct:   481 IRIICGEDVICKLKA--SSLRTTSASFISDGKHIISTSEDSYINVWSYSQLPSKKPYSET 538

Query:   501 KNSVRSCEHFFSEGVSVAVQW 521
               S+RS E F S   SVA+ W
Sbjct:   539 PKSIRSYEGFLSHNASVAIPW 559

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS;RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2040731 AT2G37670 "AT2G37670" [Arabidopsis thaliana (taxid:3702)]

 Score = 770 (276.1 bits), Expect = 4.1e-87, Sum P(3) = 4.1e-87
 Identities = 159/406 (39%), Positives = 234/406 (57%)

Query:   136 NIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK-MEVKQNKKKCMEFTALYTSQ 194
             NIK V       ++ K  +  +  S K+  + +  KAN+ ++V+   K   E +AL+  Q
Sbjct:   339 NIKGVAHSMSLRVADKDVSDGSTDSPKKGKDHKHGKANEWVKVRPTGKSYKELSALHMCQ 398

Query:   195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT----------SVAASCKSFTDDGG 244
             EIQAH+G +WT+KFS D  YLASGG D V+ +W V           S+     S  D  G
Sbjct:   399 EIQAHEGAVWTIKFSQDAHYLASGGADRVIHVWEVQECELMSMNEGSLTPIHPSLCDSSG 458

Query:   245 FGSNAXXXXXXXXXXXS---SHVP--VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN 299
                                 +H+P  V +P+ VF   + P+  L GH   +LDL+WS S 
Sbjct:   459 NEITVVEKKKKGKGSSGRRHNHIPDYVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQ 518

Query:   300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 359
              LLS SMDKTVR+W +    CL +F H++YVTC+QF+P+D+NYF+SGS+D K+RIW + +
Sbjct:   519 LLLSSSMDKTVRLWDIETKTCLKLFAHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQD 578

Query:   360 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-KLEKVDFHDRKKTSG 418
             + VV+W+D+ ++++A CY PDG+G ++GS  G C  Y      L +  ++D    KK+  
Sbjct:   579 RHVVEWSDLHEMVTAACYTPDGQGALIGSHKGICRAYDTEDCKLSQTNQIDVQSNKKSQA 638

Query:   419 N-KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII 477
               KIT  QFS      +++TS DS++RILDG +VIHKFKG   + SQ+SAS++  GK+II
Sbjct:   639 KRKITSFQFSPVNPSEVLVTSADSRIRILDGSEVIHKFKGFRNTCSQLSASYSQDGKYII 698

Query:   478 SIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 523
                +D +VY+W  D   F  ++   + +S EHF  + VS AV W G
Sbjct:   699 CASEDSQVYLWKND---FHRTRSTLTTQSHEHFHCKDVSAAVPWHG 741

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

WB|WBGene00006369 sym-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 496 (179.7 bits), Expect = 1.9e-47, Sum P(2) = 1.9e-47
 Identities = 118/354 (33%), Positives = 184/354 (51%)

Query:   172 ANKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 230
             +N +  +++KK   +F  L   QE+   H G IW +KFS  G+ +A+ G+D ++R+W V 
Sbjct:   588 SNIVRPRKSKKGPYDFEHLTVEQELNNEHTGAIWCIKFSICGKLMATAGQDSILRVWVVR 647

Query:   231 S-----------VAASCKSFTDDGGFGSNAXXXX--XXXXXXXSSHVPVVIPDEVFQIEE 277
             S            AA+     D      N              +S       D       
Sbjct:   648 SHLQYFSDMREKYAANANPEADPMNSVDNMEHFRPPSSMESVVNSEATTASDDNNGLFCA 707

Query:   278 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP 337
              P   L GH  D+LD++WS + ++LS  MD+TV++W +  N+CL  F H ++VTCV F P
Sbjct:   708 KPFALLKGHTADILDVSWSKNYFILSSGMDRTVKLWHLSRNECLCCFQHIDFVTCVAFLP 767

Query:   338 IDDNYFISGSIDGKVRIWGVCEKRVVDWADV-RDVISAICYIPDGKGFIVGSITGTCHFY 396
              DD YF+SGS+DGK+R+W + +K+V  W D  +  I+A+ ++  GK  +VG+  G C FY
Sbjct:   768 KDDRYFLSGSLDGKLRMWHIPDKKVAVWNDTEKKYITAMTFVKSGKFAVVGTYDGKCIFY 827

Query:   397 KASGNDLKLEK-VDFHDR--KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--V 451
               + + LK    VD      K   G+K+TG+    D   ++++TS DS++R+ D  D  +
Sbjct:   828 --TSDQLKYHTAVDVRSTRGKNARGHKVTGLTSHGD---KLLVTSNDSRIRMYDIRDKAL 882

Query:   452 IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS--KQKNS 503
               KFKG+    SQ+ A+F+  G+HII   +D  VY+W   +     S  K +NS
Sbjct:   883 TCKFKGVQNDHSQIRAAFSPDGRHIICGSEDKFVYIWRASDTTVALSVRKDRNS 936

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034856001 SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (659 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	645
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-11
smart00320	40	smart00320, WD40, WD40 repeats	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  121 bits (305), Expect = 1e-30
 Identities = 69/299 (23%), Positives = 118/299 (39%), Gaps = 63/299 (21%)

Query: 197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKF 256
           + H G +  +  S DG YLASG  D  +R+W                          ++ 
Sbjct: 48  KGHTGPVRDVAASADGTYLASGSSDKTIRLW-------------------------DLET 82

Query: 257 GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV 315
           G+                     ++ L GH   V  +A+S     L S S DKT+++W V
Sbjct: 83  GEC--------------------VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122

Query: 316 GCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIW-GVCEKRVVDWADVRDVIS 373
              +CL     H  +V  V F+P D  +  S S DG +++W     K V         ++
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181

Query: 374 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433
           ++ + PDG+  +  S  GT   +  S     L  +  H+      N +  + FS D    
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-LGTLRGHE------NGVNSVAFSPD--GY 232

Query: 434 IMIT-SEDSKLRI--LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489
           ++ + SED  +R+  L   + +    G   S +  S +++  GK + S   D  + +W+
Sbjct: 233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT--SLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  101 bits (254), Expect = 9e-24
 Identities = 55/259 (21%), Positives = 99/259 (38%), Gaps = 65/259 (25%)

Query: 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 253
           + +  H   + ++ FSPDGR L+S   D  +++W V +                      
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---------------------- 124

Query: 254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 312
                                     L  L GH   V  +A+S +  ++ S S D T+++
Sbjct: 125 -----------------------GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Query: 313 WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-RD 370
           W +   +C+     H   V  V F+P D    +S S DG +++W +   + +       +
Sbjct: 162 WDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN 220

Query: 371 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF----HDRKKTSGNKITGIQF 426
            ++++ + PDG     GS  GT   +     DL+  +       H       N +T + +
Sbjct: 221 GVNSVAFSPDGYLLASGSEDGTIRVW-----DLRTGECVQTLSGHT------NSVTSLAW 269

Query: 427 SRDESQRIMITSEDSKLRI 445
           S D  +R+   S D  +RI
Sbjct: 270 SPD-GKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  102 bits (255), Expect = 4e-23
 Identities = 71/344 (20%), Positives = 122/344 (35%), Gaps = 23/344 (6%)

Query: 162 KRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGED 221
                S     + + +       +      +S  ++ H+  I ++ FSPDG  L SG  D
Sbjct: 27  SLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSD 86

Query: 222 GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKK---KSSHVPVVIPDEVFQIEES 278
           G +++W + +     KS         +        G      SS +   +          
Sbjct: 87  GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK 146

Query: 279 PLQELHGHKGDVLDLAWSNSNYLL--SCSMDKTVRMWQVGCNQCLNVFDHHN-YVTCVQF 335
            ++ L GH   V  LA+S    LL    S+D T+++W +   + L+    H   V+ + F
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206

Query: 336 NPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG 391
           +P       SGS DG +R+W    G   +  +       V     + PDG     GS  G
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV---SSFSPDGSLLASGSSDG 263

Query: 392 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD--GV 449
           T   +    +   L  +  H         +  + FS D    +   S D  +R+ D    
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSS------SVLSVAFSPDGKL-LASGSSDGTVRLWDLETG 316

Query: 450 DVIHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDE 492
            ++         G   S SF+  G  +     DD  + +W+   
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 94.8 bits (234), Expect = 2e-20
 Identities = 71/331 (21%), Positives = 126/331 (38%), Gaps = 44/331 (13%)

Query: 193 SQEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVA-----------ASCKSFT 240
            + ++ H   + +L FSPDG+ LASG   DG +++W + +              S  +F+
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207

Query: 241 DDGG--FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS 298
            DGG    S + +G I+     +  +                  L GH   V+     + 
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLL--------------RSTLSGHSDSVVSSFSPDG 253

Query: 299 NYLLSCSMDKTVRMWQV-GCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWG 356
           + L S S D T+R+W +   +  L     H+  V  V F+P D     SGS DG VR+W 
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWD 312

Query: 357 VCEKRVVDWADVR---DVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHD 412
           +   +++    ++     +S++ + PDG   + G S  GT   +                
Sbjct: 313 LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT--------GKPL 364

Query: 413 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT 472
           +     + +  + FS D  + +   S D  +R+ D             +    S  F+  
Sbjct: 365 KTLEGHSNVLSVSFSPDG-RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD 423

Query: 473 GKHIISIGDDCRVYVWNYDELCFPSSKQKNS 503
           GK + S   D  + +W+        S   + 
Sbjct: 424 GKSLASGSSDNTIRLWDLKTSLKSVSFSPDG 454

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 48/164 (29%)

Query: 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 253
             +  H G + ++ FSPDG  L S   DG +++W                    +   GK
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW--------------------DLSTGK 210

Query: 254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL-SCSMDKTVRM 312
                                     L  L GH+  V  +A+S   YLL S S D T+R+
Sbjct: 211 -------------------------CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245

Query: 313 WQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIW 355
           W +   +C+     H N VT + ++P D     SGS DG +RIW
Sbjct: 246 WDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.1 bits (185), Expect = 9e-15
 Identities = 57/278 (20%), Positives = 103/278 (37%), Gaps = 36/278 (12%)

Query: 279 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 336
             + L GH G V  +A+S +   L + S D T+++W +   + L     H   V  V  +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 337 PIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGT 392
             D  Y  SGS D  +R+W    G C   V         +S++ + PDG+     S   T
Sbjct: 61  A-DGTYLASGSSDKTIRLWDLETGEC---VRTLTGHTSYVSSVAFSPDGRILSSSSRDKT 116

Query: 393 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-- 450
              +                        +  + FS D    +  +S+D  +++ D     
Sbjct: 117 IKVWDVETGKCLTT---LRGHTDW----VNSVAFSPD-GTFVASSSQDGTIKLWDLRTGK 168

Query: 451 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF 510
            +    G     +  S +F+  G+ ++S   D  + +W+       + K   ++R  E+ 
Sbjct: 169 CVATLTGHTGEVN--SVAFSPDGEKLLSSSSDGTIKLWDLS-----TGKCLGTLRGHENG 221

Query: 511 FSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET 548
                SVA       +    L +S   D + +  +L T
Sbjct: 222 V---NSVAF------SPDGYLLASGSEDGTIRVWDLRT 250

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 46/124 (37%)

Query: 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE 251
               ++ H+  + ++ FSPDG  LASG EDG +R+W + +                    
Sbjct: 211 CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT-------------------- 250

Query: 252 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTV 310
                                       +Q L GH   V  LAWS     L S S D T+
Sbjct: 251 -------------------------GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285

Query: 311 RMWQ 314
           R+W 
Sbjct: 286 RIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 15/35 (42%), Positives = 26/35 (74%)

Query: 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 228
           + ++ H G + ++ FSPDG+YLASG +DG +++W 
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 228
           + ++ H G + ++ FSPDG  LASG +DG VR+W 
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 277 ESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMW 313
              L+ L GH G V  +A+S + N L S S D TVR+W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 278 SPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMW 313
             L+ L GH G V  +A+S +  YL S S D T+++W
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 319 QCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIW 355
           + L     H   VT V F+P D  Y  SGS DG +++W
Sbjct: 3   ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 319 QCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIW 355
           + L     H   VT V F+P D N   SGS DG VR+W
Sbjct: 2   KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 18/103 (17%)

Query: 274 QIEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCN----------QCL 321
           Q+ + P+ +L GH   +LDL ++   S  L S S D T+R+W++  N          QC+
Sbjct: 61  QMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120

Query: 322 NVFDHHNYVTCVQFNPIDDNYFI--SGSIDGKVRIWGV-CEKR 361
            +  H   ++ + +NP+  NY+I  S   D  V IW +  EKR
Sbjct: 121 -LKGHKKKISIIDWNPM--NYYIMCSSGFDSFVNIWDIENEKR 160

Length = 568

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 14/149 (9%)

Query: 196 IQAHKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI 254
           ++ H+G + +L FSPDG  L SGG +DG +R+W +                 SN      
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL-----RTGKPLKTLEGHSNVLSVSF 378

Query: 255 KFGKKKSSHVP----VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT 309
               +  S       V + D       S L+ L GH   V  L +S     L S S D T
Sbjct: 379 SPDGRVVSSGSTDGTVRLWDLS---TGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435

Query: 310 VRMWQVGCNQCLNVFDHHNYVTCVQFNPI 338
           +R+W +  +     F     V   + + +
Sbjct: 436 IRLWDLKTSLKSVSFSPDGKVLASKSSDL 464

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 37/182 (20%)

Query: 195 EIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHV----------TSVAASCKSFTDDG 243
           E++ H+  +W++ +S  D   LASG +DG V++W +          T     C  F  + 
Sbjct: 570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629

Query: 244 G----FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN 299
           G    FGS   + K+ +   ++  +P              L  + GH   V  + + +S+
Sbjct: 630 GRSLAFGS--ADHKVYYYDLRNPKLP--------------LCTMIGHSKTVSYVRFVDSS 673

Query: 300 YLLSCSMDKTVRMWQV-----GCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 353
            L+S S D T+++W +     G N+  L+ F  H  V       + D Y  +GS   +V 
Sbjct: 674 TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVF 733

Query: 354 IW 355
           ++
Sbjct: 734 VY 735

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	645
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.98
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0645	312	consensus WD40 repeat protein [General function pr	99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
PTZ00420	568	coronin; Provisional	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.88
KOG4227	609	consensus WD40 repeat protein [General function pr	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.86
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.86
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG4328	498	consensus WD40 protein [Function unknown]	99.85
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.84
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.82
KOG2055	514	consensus WD40 repeat protein [General function pr	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
KOG1273	405	consensus WD40 repeat protein [General function pr	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
KOG1274	933	consensus WD40 repeat protein [General function pr	99.81
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
KOG1963	792	consensus WD40 repeat protein [General function pr	99.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.78
KOG1334	559	consensus WD40 repeat protein [General function pr	99.78
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.77
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG1188	376	consensus WD40 repeat protein [General function pr	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.75
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.75
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.74
KOG1963	792	consensus WD40 repeat protein [General function pr	99.73
KOG1310	758	consensus WD40 repeat protein [General function pr	99.73
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
COG2319	466	FOG: WD40 repeat [General function prediction only	99.72
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.71
KOG0649	325	consensus WD40 repeat protein [General function pr	99.71
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.7
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.69
PRK11028	330	6-phosphogluconolactonase; Provisional	99.69
PRK11028	330	6-phosphogluconolactonase; Provisional	99.69
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.66
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.65
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.64
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.64
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.64
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.64
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.63
KOG2321	703	consensus WD40 repeat protein [General function pr	99.63
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.62
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.62
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.62
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.61
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.61
KOG2139	445	consensus WD40 repeat protein [General function pr	99.61
PRK01742	429	tolB translocation protein TolB; Provisional	99.6
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.6
KOG1310	758	consensus WD40 repeat protein [General function pr	99.57
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.54
PRK05137	435	tolB translocation protein TolB; Provisional	99.54
PRK02889	427	tolB translocation protein TolB; Provisional	99.54
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.53
PRK04922	433	tolB translocation protein TolB; Provisional	99.53
KOG2139	445	consensus WD40 repeat protein [General function pr	99.52
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.52
PRK03629	429	tolB translocation protein TolB; Provisional	99.51
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.5
KOG0649	325	consensus WD40 repeat protein [General function pr	99.5
PRK02889	427	tolB translocation protein TolB; Provisional	99.49
KOG1334	559	consensus WD40 repeat protein [General function pr	99.49
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.48
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.48
KOG2315	566	consensus Predicted translation initiation factor	99.46
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.45
PRK04922	433	tolB translocation protein TolB; Provisional	99.45
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.44
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.4
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.4
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.38
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.38
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.37
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.37
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.36
PRK04792	448	tolB translocation protein TolB; Provisional	99.35
KOG2321	703	consensus WD40 repeat protein [General function pr	99.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.34
PRK00178	430	tolB translocation protein TolB; Provisional	99.33
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.32
PRK04792	448	tolB translocation protein TolB; Provisional	99.29
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.29
PRK00178	430	tolB translocation protein TolB; Provisional	99.28
KOG2315	566	consensus Predicted translation initiation factor	99.26
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.25
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.24
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.21
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.18
PRK01029	428	tolB translocation protein TolB; Provisional	99.18
KOG4547	541	consensus WD40 repeat-containing protein [General	99.17
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.17
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.16
PRK01029	428	tolB translocation protein TolB; Provisional	99.16
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.15
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.15
KOG2314	698	consensus Translation initiation factor 3, subunit	99.14
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.12
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.12
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.09
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.04
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.04
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.03
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.02
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.01
KOG2314	698	consensus Translation initiation factor 3, subunit	98.99
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.98
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.97
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.97
COG4946	668	Uncharacterized protein related to the periplasmic	98.94
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.91
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.91
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.9
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.9
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.9
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.9
KOG4547	541	consensus WD40 repeat-containing protein [General	98.87
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.86
PRK04043	419	tolB translocation protein TolB; Provisional	98.85
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.85
COG4946	668	Uncharacterized protein related to the periplasmic	98.84
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.8
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.79
PRK04043	419	tolB translocation protein TolB; Provisional	98.78
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.73
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.73
KOG2695	425	consensus WD40 repeat protein [General function pr	98.67
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.66
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.64
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.63
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.63
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.6
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.59
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.58
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.56
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.54
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.53
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.49
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.46
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.44
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.43
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.39
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.39
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.39
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.38
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.34
KOG2695	425	consensus WD40 repeat protein [General function pr	98.33
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.31
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.29
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.28
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.28
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.23
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.17
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.16
PRK02888	635	nitrous-oxide reductase; Validated	98.12
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.09
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.08
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.08
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.06
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.06
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.05
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.05
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.04
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.02
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.01
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.0
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.99
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.97
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.97
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.96
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.88
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.88
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.88
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.81
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.8
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.75
KOG3621	726	consensus WD40 repeat-containing protein [General	97.74
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.74
PRK02888	635	nitrous-oxide reductase; Validated	97.73
KOG3621	726	consensus WD40 repeat-containing protein [General	97.72
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.53
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.48
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.45
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.44
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.43
COG3391	381	Uncharacterized conserved protein [Function unknow	97.43
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.42
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.34
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.33
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.32
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.27
COG3391	381	Uncharacterized conserved protein [Function unknow	97.23
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.21
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.19
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.19
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.19
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.07
KOG2395	644	consensus Protein involved in vacuole import and d	97.02
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.98
KOG2395	644	consensus Protein involved in vacuole import and d	96.96
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.94
PRK13616	591	lipoprotein LpqB; Provisional	96.91
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.68
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.65
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.6
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.45
KOG2444	238	consensus WD40 repeat protein [General function pr	96.44
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.34
PRK13616	591	lipoprotein LpqB; Provisional	96.29
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.26
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.16
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.14
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.13
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.87
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.81
PHA02713	557	hypothetical protein; Provisional	95.8
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.66
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.62
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.6
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.59
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.5
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.46
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.42
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.34
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.96
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.92
KOG2444	238	consensus WD40 repeat protein [General function pr	94.9
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.79
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.62
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.48
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.39
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.25
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.23
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.12
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.08
PHA03098	534	kelch-like protein; Provisional	94.06
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.03
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.93
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.54
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.5
PHA02713	557	hypothetical protein; Provisional	93.5
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.42
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.2
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.11
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.06
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.05
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.78
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.58
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.52
COG5167	776	VID27 Protein involved in vacuole import and degra	92.21
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.09
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.91
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	91.74
PHA02790	480	Kelch-like protein; Provisional	91.72
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.7
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.56
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.51
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.45
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.28
PRK13684	334	Ycf48-like protein; Provisional	91.26
PRK10115	686	protease 2; Provisional	91.22
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	90.99
PHA03098	534	kelch-like protein; Provisional	90.95
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.73
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.61
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	90.52
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	90.42
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.12
COG5276	370	Uncharacterized conserved protein [Function unknow	89.63
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.44
COG5167	776	VID27 Protein involved in vacuole import and degra	89.06
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.65
PHA02790	480	Kelch-like protein; Provisional	88.58
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.79
COG3292	671	Predicted periplasmic ligand-binding sensor domain	87.77
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.67
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	87.62
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	86.62
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	86.56
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.49
KOG2377	657	consensus Uncharacterized conserved protein [Funct	86.48
COG5276	370	Uncharacterized conserved protein [Function unknow	85.58
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.53
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	85.43
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	84.9
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	84.8
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	84.28
KOG2377	657	consensus Uncharacterized conserved protein [Funct	84.06
PF13449	326	Phytase-like: Esterase-like activity of phytase	83.08
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	82.23
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	81.56
PF13449	326	Phytase-like: Esterase-like activity of phytase	81.35
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	81.09
KOG3616	1636	consensus Selective LIM binding factor [Transcript	80.54

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-46  Score=383.11  Aligned_cols=355  Identities=47%  Similarity=0.904  Sum_probs=286.6

Q ss_pred             chhHhhhcccccccccccccccccc-cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCC---------
Q 006424          173 NKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD---------  242 (645)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~---------  242 (645)
                      ..+++.+.++...++..++..+.+. +|.++|++|.||+||+|||+||.||.|+||.+...+.........         
T Consensus       239 ~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~  318 (712)
T KOG0283|consen  239 SRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNA  318 (712)
T ss_pred             ceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhh
Confidence            6677888889999999999999999 999999999999999999999999999999987733321111110         


Q ss_pred             -CCcccCC-----CCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecC
Q 006424          243 -GGFGSNA-----KEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG  316 (645)
Q Consensus       243 -~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~  316 (645)
                       +......     ..+................+...+.+..++++.+.||.+.|.+|.|+.+++|+++|.|.+|++|++.
T Consensus       319 ~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~  398 (712)
T KOG0283|consen  319 NSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPG  398 (712)
T ss_pred             ccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCC
Confidence             0000000     0111122222222233566677777889999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006424          317 CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFY  396 (645)
Q Consensus       317 ~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iw  396 (645)
                      ..+|+..|.|.+.|+|++|+|.|.++|++|+.||.|+||++...++..+.....-|++++|.|||++.++|+.+|.+++|
T Consensus       399 ~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY  478 (712)
T KOG0283|consen  399 RKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFY  478 (712)
T ss_pred             CcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC--CcceeeEeecCCCCCeEEEEEecCC
Q 006424          397 KASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG--VDVIHKFKGLPKSGSQMSASFTTTG  473 (645)
Q Consensus       397 d~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~--~~~~~~~~~~~~~~~i~~v~~sp~~  473 (645)
                      +..+.+.... .+..+.........|+.++|.|.....+++.+.|..|+|+|+  ...+..|++......-....|+.||
T Consensus       479 ~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg  558 (712)
T KOG0283|consen  479 DTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG  558 (712)
T ss_pred             EccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC
Confidence            9998876554 444554444444589999999987677999999999999999  5788899988777788889999999


Q ss_pred             CEEEEEeCCccEEEEeCCCCCc-CCCcccCCcceeeeeecCCcEEEEecCCCCcc
Q 006424          474 KHIISIGDDCRVYVWNYDELCF-PSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTE  527 (645)
Q Consensus       474 ~~l~t~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~  527 (645)
                      ++|+++++|..|+||+++.... ..............|+......++.|..-...
T Consensus       559 k~IVs~seDs~VYiW~~~~~~~~~~~~~~~~~~s~e~f~s~~vs~a~~w~g~~~~  613 (712)
T KOG0283|consen  559 KHIVSASEDSWVYIWKNDSFNSEASHKKTKSIRSYEHFSSVDVSVAIPWPGFHAH  613 (712)
T ss_pred             CEEEEeecCceEEEEeCCCCccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999976532 11222333445556666666667777654443

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.1e-46  Score=346.52  Aligned_cols=328  Identities=24%  Similarity=0.367  Sum_probs=263.7

Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      .....+.||.++|.|++|+|+|++|+||+.|.++|+||+.+                                       
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T---------------------------------------  146 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT---------------------------------------  146 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC---------------------------------------
Confidence            35567899999999999999999999999999999999997                                       


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE-e-cCCCcEEEEEEeeC----CCCEE
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPI----DDNYF  343 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~-~-~~~~~v~~l~~~p~----~~~~l  343 (645)
                            ..+..+.++|...|.|++|+||+ .|++|+.||+|++||..+|+++.. + +|...|++++|.|.    ..++|
T Consensus       147 ------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~l  220 (480)
T KOG0271|consen  147 ------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRL  220 (480)
T ss_pred             ------CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccce
Confidence                  67789999999999999999998 899999999999999999887653 3 59999999999872    45689


Q ss_pred             EEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424          344 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       344 ~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      ++++.||.++|||+..+.++. +.+|..+|+|++|--+| ++++|+.|++|++|+...+....       ...+|...|+
T Consensus       221 as~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r-------~lkGHahwvN  292 (480)
T KOG0271|consen  221 ASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCR-------ELKGHAHWVN  292 (480)
T ss_pred             ecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHH-------hhcccchhee
Confidence            999999999999999887665 78999999999997655 89999999999999988755421       2233456777


Q ss_pred             EEEEc-----------CCC------------------------CcEEEEEECCCeEEEEECCcce-eeEeecCCCCCeEE
Q 006424          423 GIQFS-----------RDE------------------------SQRIMITSEDSKLRILDGVDVI-HKFKGLPKSGSQMS  466 (645)
Q Consensus       423 ~i~~s-----------~~g------------------------~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~~~i~~  466 (645)
                      .++++           |.+                        +..+++|+.|.++.+|+..... ..-+...|..-|+.
T Consensus       293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~  372 (480)
T KOG0271|consen  293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNH  372 (480)
T ss_pred             eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheee
Confidence            77765           222                        2369999999999999965332 22233448999999


Q ss_pred             EEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCcccccc
Q 006424          467 ASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL  546 (645)
Q Consensus       467 v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~  546 (645)
                      +.||||++++|++|-|..|++||..+++....                                                
T Consensus       373 V~fSPd~r~IASaSFDkSVkLW~g~tGk~las------------------------------------------------  404 (480)
T KOG0271|consen  373 VSFSPDGRYIASASFDKSVKLWDGRTGKFLAS------------------------------------------------  404 (480)
T ss_pred             EEECCCccEEEEeecccceeeeeCCCcchhhh------------------------------------------------
Confidence            99999999999999999999999988742211                                                


Q ss_pred             ccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCC--ccCCCCcceEE
Q 006424          547 ETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVI  624 (645)
Q Consensus       547 ~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~i  624 (645)
                           +++|-..++.+++|.|.++++|++. |.++++|++.+.           ++.+-..+|.+.+  +..+| ||.++
T Consensus       405 -----fRGHv~~VYqvawsaDsRLlVS~Sk-DsTLKvw~V~tk-----------Kl~~DLpGh~DEVf~vDwsp-DG~rV  466 (480)
T KOG0271|consen  405 -----FRGHVAAVYQVAWSADSRLLVSGSK-DSTLKVWDVRTK-----------KLKQDLPGHADEVFAVDWSP-DGQRV  466 (480)
T ss_pred             -----hhhccceeEEEEeccCccEEEEcCC-CceEEEEEeeee-----------eecccCCCCCceEEEEEecC-CCcee
Confidence                 1223334455566666777777777 889999999987           3333333444444  44445 89999


Q ss_pred             EEecCCCeEeEEE
Q 006424          625 VTAGCDGMIKTFH  637 (645)
Q Consensus       625 vt~s~Dg~Iriw~  637 (645)
                      ++||.|..+|+|.
T Consensus       467 ~sggkdkv~~lw~  479 (480)
T KOG0271|consen  467 ASGGKDKVLRLWR  479 (480)
T ss_pred             ecCCCceEEEeec
Confidence            9999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-42  Score=322.29  Aligned_cols=322  Identities=19%  Similarity=0.313  Sum_probs=267.0

Q ss_pred             hhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchhH
Q 006424           97 DELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKME  176 (645)
Q Consensus        97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (645)
                      ..+.||...|..+.|+|++.. +++.+-            |.++|.|                                 
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~-l~tGsG------------D~TvR~W---------------------------------  142 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSR-LVTGSG------------DTTVRLW---------------------------------  142 (480)
T ss_pred             cccCCCCCcEEEEEecCCCce-EEecCC------------CceEEee---------------------------------
Confidence            367899999999999998877 777776            6666666                                 


Q ss_pred             hhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEe
Q 006424          177 VKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKF  256 (645)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (645)
                               ....-....+.++|...|.|++|+|||+.||+|+.||+|++||.+++                        
T Consensus       143 ---------D~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg------------------------  189 (480)
T KOG0271|consen  143 ---------DLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG------------------------  189 (480)
T ss_pred             ---------ccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC------------------------
Confidence                     11111245678999999999999999999999999999999999884                        


Q ss_pred             cccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcC-----C-CeEEEEeCCCcEEEEecCCCeEEEEe-cCCCc
Q 006424          257 GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN-----S-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNY  329 (645)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-----~-~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~  329 (645)
                                          .+....+.||...|++++|.|     . ++|++++.||+|+|||+..++++..+ +|+.+
T Consensus       190 --------------------~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~  249 (480)
T KOG0271|consen  190 --------------------QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS  249 (480)
T ss_pred             --------------------CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc
Confidence                                344678899999999999975     2 38999999999999999999998877 59999


Q ss_pred             EEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEc-----------cCCC---------------
Q 006424          330 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYI-----------PDGK---------------  382 (645)
Q Consensus       330 v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~s-----------p~g~---------------  382 (645)
                      |+|+.|-  ...++++|+.|++|++|+...+.+.. +.+|...|+.++.+           |.++               
T Consensus       250 VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r  327 (480)
T KOG0271|consen  250 VTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER  327 (480)
T ss_pred             eEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence            9999996  46799999999999999998887655 78899999998776           3333               


Q ss_pred             ----------EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce
Q 006424          383 ----------GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI  452 (645)
Q Consensus       383 ----------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~  452 (645)
                                .+++|+.|+++.+|+......++...      ..|..-|+.+.|+||+ .++++++.|..|++||.++..
T Consensus       328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm------tgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk  400 (480)
T KOG0271|consen  328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM------TGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGK  400 (480)
T ss_pred             HHHhhccCcceeEEecCCceEEEecccccccchhhh------hchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcc
Confidence                      49999999999999987666544332      3345789999999998 899999999999999988655


Q ss_pred             eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccC
Q 006424          453 HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLC  532 (645)
Q Consensus       453 ~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~  532 (645)
                      .......|-..|..++|+.|.++|++||.|.++++|++.+.+....          ...+...+.++.|+|||..+++.+
T Consensus       401 ~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~D----------LpGh~DEVf~vDwspDG~rV~sgg  470 (480)
T KOG0271|consen  401 FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQD----------LPGHADEVFAVDWSPDGQRVASGG  470 (480)
T ss_pred             hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeeccc----------CCCCCceEEEEEecCCCceeecCC
Confidence            4444445899999999999999999999999999999988743221          122466789999999999999877


Q ss_pred             CCCc
Q 006424          533 SSSL  536 (645)
Q Consensus       533 ~~~~  536 (645)
                      .|..
T Consensus       471 kdkv  474 (480)
T KOG0271|consen  471 KDKV  474 (480)
T ss_pred             CceE
Confidence            7644

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.6e-40  Score=313.94  Aligned_cols=242  Identities=21%  Similarity=0.326  Sum_probs=220.3

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      |-+.+|..+.||+|++.|||||.+|.+++|+..+                                             .
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~---------------------------------------------~  207 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ---------------------------------------------C  207 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCC---------------------------------------------c
Confidence            6788999999999999999999999999999986                                             4


Q ss_pred             CCceeeccCccCeEEEEEcCC--C-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVR  353 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~--~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~  353 (645)
                      ..+++|.||...|.++.|+|.  + .++||+.||++++|++.+..++..+. |...|..++|+| +|++|++++.|.+-+
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWR  286 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWR  286 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecC-CCceeeecccccchh
Confidence            567899999999999999996  4 89999999999999999888888874 889999999999 999999999999999


Q ss_pred             EEeCCCCcE-EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424          354 IWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       354 vwd~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                      +||++++.. +...+|...|.+++|.|||..+++|+.|..-+|||++++.....   +.+    |...|.++.|+|+| +
T Consensus       287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~---L~g----H~k~I~~V~fsPNG-y  358 (459)
T KOG0272|consen  287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF---LAG----HIKEILSVAFSPNG-Y  358 (459)
T ss_pred             hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE---ecc----cccceeeEeECCCc-e
Confidence            999998764 45789999999999999999999999999999999999987543   233    45899999999998 8


Q ss_pred             EEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCC
Q 006424          433 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       433 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .+++|+.|++++|||++.....+....|..-|+.+.|+| .|.+|+|+|.|++++||.-.+.
T Consensus       359 ~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~  420 (459)
T KOG0272|consen  359 HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW  420 (459)
T ss_pred             EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence            999999999999999997666777788999999999999 7899999999999999987665

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-39  Score=309.09  Aligned_cols=248  Identities=23%  Similarity=0.394  Sum_probs=222.0

Q ss_pred             ccccccccccccCcEEEEEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424          189 ALYTSQEIQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  266 (645)
Q Consensus       189 ~~~~~~~l~~H~~~V~~l~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (645)
                      .....++|.||++.|.++.|+|.  +.-||||+.||++++|++.+                                   
T Consensus       206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-----------------------------------  250 (459)
T KOG0272|consen  206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-----------------------------------  250 (459)
T ss_pred             CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-----------------------------------
Confidence            33567889999999999999997  56999999999999999986                                   


Q ss_pred             ecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEE
Q 006424          267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~  344 (645)
                                ..++..+.||...|..++|+|+| +|+|++.|.+-++||++++..+... +|...|.+++|+| +|.+++
T Consensus       251 ----------e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~  319 (459)
T KOG0272|consen  251 ----------ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAA  319 (459)
T ss_pred             ----------CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceee
Confidence                      57789999999999999999998 8999999999999999998876655 5999999999999 999999


Q ss_pred             EEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424          345 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  423 (645)
Q Consensus       345 s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (645)
                      +|+.|..-+|||+++++++. +.+|..+|.++.|+|+|..+|+|+.|++++|||++.... ...+      ..|.+-|+.
T Consensus       320 tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~i------pAH~nlVS~  392 (459)
T KOG0272|consen  320 TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTI------PAHSNLVSQ  392 (459)
T ss_pred             ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc-ceec------ccccchhhh
Confidence            99999999999999988765 678999999999999999999999999999999997765 2222      234588999


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          424 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                      ++|+|..+.+|++++.|++++||........-...+|.+.|.++++++|+.+++|++.|.++++|.
T Consensus       393 Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  393 VKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             eEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999996669999999999999999876554444455999999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.1e-37  Score=279.82  Aligned_cols=285  Identities=20%  Similarity=0.329  Sum_probs=233.8

Q ss_pred             cccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee-----------eEecCCCCcccCCCCceE-Eec
Q 006424          190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-----------KSFTDDGGFGSNAKEGKI-KFG  257 (645)
Q Consensus       190 ~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~~  257 (645)
                      +...++|+||.+.|.++.|++|.++|+++|.||.+.|||.-+.....           -.+.|.+.+.+...-... .+.
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY  124 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence            34558899999999999999999999999999999999988765532           234555555443332221 111


Q ss_pred             ccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEe
Q 006424          258 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFN  336 (645)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~  336 (645)
                      .....         ..+-.....+.+.+|++.+.|+.|-+|+.|+|+|.|.+..+||+++++.+..|. |.+.|.++.++
T Consensus       125 ~ls~~---------d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~  195 (343)
T KOG0286|consen  125 PLSTR---------DAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLS  195 (343)
T ss_pred             ecccc---------cccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecC
Confidence            11000         000012345678999999999999999999999999999999999999999994 99999999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc
Q 006424          337 PIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  415 (645)
Q Consensus       337 p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  415 (645)
                      |.+++.+++|+-|+..++||++.+.+++ +.+|...|++++|.|+|.-+++|+.|+++++||++....... +.    ..
T Consensus       196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~-ys----~~  270 (343)
T KOG0286|consen  196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV-YS----HD  270 (343)
T ss_pred             CCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee-ec----cC
Confidence            9889999999999999999999988765 889999999999999999999999999999999998765332 21    11


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          416 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       416 ~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                      ....+|++++|+..| ++|++|..|..+.+||.-.....-....|...|.++..+|||.-++|||.|.+++||.
T Consensus       271 ~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  271 SIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            224789999999998 8999999999999999765555555556999999999999999999999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-36  Score=270.19  Aligned_cols=294  Identities=16%  Similarity=0.275  Sum_probs=242.6

Q ss_pred             ccccccccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          191 YTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      .+..+|++|++.|+.++..+. ...+++++.|.++.+|++...+..                                  
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------------------------   51 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------------------------   51 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------------------------
Confidence            355679999999999999987 458999999999999999763110                                  


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  347 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s  347 (645)
                            -+.+++.+.||+..|..+..++++ +.++++.|+++++||+.+++..+.| +|...|.+++|+| +...+++|+
T Consensus        52 ------~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGS  124 (315)
T KOG0279|consen   52 ------YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGS  124 (315)
T ss_pred             ------cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCC
Confidence                  156788999999999999999997 8999999999999999999888877 5999999999999 999999999


Q ss_pred             CCCcEEEEeCCCCcEEEeecc--CCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424          348 IDGKVRIWGVCEKRVVDWADV--RDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  423 (645)
Q Consensus       348 ~dg~i~vwd~~~~~~~~~~~~--~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (645)
                      .|.+|++|++.+....+...+  .+.|+|++|+|+  ..+++.++.|+++++||+++.+....       ..+|.+.++.
T Consensus       125 rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~-------~~gh~~~v~t  197 (315)
T KOG0279|consen  125 RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT-------FIGHSGYVNT  197 (315)
T ss_pred             CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc-------cccccccEEE
Confidence            999999999998887776555  789999999997  67999999999999999998775433       2335688999


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCC
Q 006424          424 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS  503 (645)
Q Consensus       424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~  503 (645)
                      +.++||| .+.++|+.||.+.+||+++....+.. .+...|.+++|+|+.-.|+.+. +..|+|||+++...........
T Consensus       198 ~~vSpDG-slcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~  274 (315)
T KOG0279|consen  198 VTVSPDG-SLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDG  274 (315)
T ss_pred             EEECCCC-CEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccc
Confidence            9999998 79999999999999999977664444 4888999999999977666654 5569999999886443332221


Q ss_pred             cceeeeeecCCcEEEEecCCCCccccccCCCCc
Q 006424          504 VRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL  536 (645)
Q Consensus       504 ~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~  536 (645)
                      ... ..-..+-..+.++|+++|..|+....++.
T Consensus       275 ~g~-s~~~~~~~clslaws~dG~tLf~g~td~~  306 (315)
T KOG0279|consen  275 IGP-SSKAGDPICLSLAWSADGQTLFAGYTDNV  306 (315)
T ss_pred             ccc-ccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence            111 01112345688999999999998777755

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.9e-36  Score=301.82  Aligned_cols=380  Identities=18%  Similarity=0.244  Sum_probs=296.7

Q ss_pred             cccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424          186 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  265 (645)
Q Consensus       186 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (645)
                      +++++...+++.+|-+.|+++.|+.|.++|++||.|-++++|+++..+                                
T Consensus       131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k--------------------------------  178 (893)
T KOG0291|consen  131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK--------------------------------  178 (893)
T ss_pred             ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc--------------------------------
Confidence            678888889999999999999999999999999999999999998631                                


Q ss_pred             eecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC-----------------------CeE-
Q 006424          266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----------------------NQC-  320 (645)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~-----------------------~~~-  320 (645)
                                 +-....+.||.+.|.++-|..+. .+++.+.||.+.+|....                       ++. 
T Consensus       179 -----------~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek  247 (893)
T KOG0291|consen  179 -----------NLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK  247 (893)
T ss_pred             -----------ccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence                       22356788999999999999876 899999999999997651                       110 


Q ss_pred             --------EEE--e-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-cCCCeEEEEEccCCCEEEEEe
Q 006424          321 --------LNV--F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGS  388 (645)
Q Consensus       321 --------~~~--~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~  388 (645)
                              ...  + .....|++.+|++ ..+.|++|-..|...+|++..-.++.... ...+|..+.|+..|.++|.|+
T Consensus       248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~  326 (893)
T KOG0291|consen  248 THKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC  326 (893)
T ss_pred             hcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC
Confidence                    000  1 1336899999999 88999999999999999999988777544 447899999999999999987


Q ss_pred             cC-CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEE
Q 006424          389 IT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSA  467 (645)
Q Consensus       389 ~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v  467 (645)
                      .. |.+-+|+........+       .++|...+++++++||| +++++|+.||.|+|||.....+......|...|+.+
T Consensus       327 ~klgQLlVweWqsEsYVlK-------QQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v  398 (893)
T KOG0291|consen  327 SKLGQLLVWEWQSESYVLK-------QQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAV  398 (893)
T ss_pred             CccceEEEEEeeccceeee-------ccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEE
Confidence            65 8999999987765433       23356889999999998 899999999999999998866666666699999999


Q ss_pred             EEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccc
Q 006424          468 SFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE  547 (645)
Q Consensus       468 ~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~  547 (645)
                      .|+..|+.+++.+-||+|+.||+........-.....         -+...++-.|.|..+....-|..  .+.+|+.-.
T Consensus       399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p---------~QfscvavD~sGelV~AG~~d~F--~IfvWS~qT  467 (893)
T KOG0291|consen  399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP---------IQFSCVAVDPSGELVCAGAQDSF--EIFVWSVQT  467 (893)
T ss_pred             EEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc---------eeeeEEEEcCCCCEEEeeccceE--EEEEEEeec
Confidence            9999999999999999999999987642211111111         11223444555555554443322  345665533


Q ss_pred             cCC--ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEE
Q 006424          548 TAP--WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIV  625 (645)
Q Consensus       548 ~~~--~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iv  625 (645)
                      +..  .+.+|++++.+++|+|+|..|+|++| |.+|++||+-... .        ..+.....+....++|.| ||..|+
T Consensus       468 GqllDiLsGHEgPVs~l~f~~~~~~LaS~SW-DkTVRiW~if~s~-~--------~vEtl~i~sdvl~vsfrP-dG~ela  536 (893)
T KOG0291|consen  468 GQLLDILSGHEGPVSGLSFSPDGSLLASGSW-DKTVRIWDIFSSS-G--------TVETLEIRSDVLAVSFRP-DGKELA  536 (893)
T ss_pred             CeeeehhcCCCCcceeeEEccccCeEEeccc-cceEEEEEeeccC-c--------eeeeEeeccceeEEEEcC-CCCeEE
Confidence            333  67899999999999999999999999 9999999985441 1        122334455555566766 799999


Q ss_pred             EecCCCeEeEEEec
Q 006424          626 TAGCDGMIKTFHNY  639 (645)
Q Consensus       626 t~s~Dg~Iriw~~~  639 (645)
                      .+..||.|.+|+..
T Consensus       537 VaTldgqItf~d~~  550 (893)
T KOG0291|consen  537 VATLDGQITFFDIK  550 (893)
T ss_pred             EEEecceEEEEEhh
Confidence            99999999999954

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-36  Score=273.24  Aligned_cols=295  Identities=18%  Similarity=0.341  Sum_probs=236.2

Q ss_pred             cchhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCcc
Q 006424           93 NCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKA  172 (645)
Q Consensus        93 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (645)
                      -.|..+|++|.++|..+++.+.....+.+++.            |+.+..|-          +                 
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasr------------Dk~ii~W~----------L-----------------   45 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASR------------DKTIIVWK----------L-----------------   45 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEccc------------ceEEEEEE----------e-----------------
Confidence            34667999999999999999986555667777            66555551          0                 


Q ss_pred             chhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCc
Q 006424          173 NKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG  252 (645)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  252 (645)
                              ...  +.+.-...+.|+||+..|..+..++||++.++++.||++++||+.+                     
T Consensus        46 --------~~d--d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~---------------------   94 (315)
T KOG0279|consen   46 --------TSD--DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT---------------------   94 (315)
T ss_pred             --------ccC--ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC---------------------
Confidence                    000  1111125667999999999999999999999999999999999997                     


Q ss_pred             eEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec--CCCc
Q 006424          253 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNY  329 (645)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~  329 (645)
                                              ++..+.|.||...|.+++|++++ .+++|+.|.+|++|++.........+  +.+.
T Consensus        95 ------------------------g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W  150 (315)
T KOG0279|consen   95 ------------------------GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW  150 (315)
T ss_pred             ------------------------CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence                                    46678999999999999999987 99999999999999998554444444  3789


Q ss_pred             EEEEEEeeCC-CCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424          330 VTCVQFNPID-DNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK  407 (645)
Q Consensus       330 v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~  407 (645)
                      |.|+.|+|+. .-+|++++.|++|++||+++-++.. +.+|.+.++.+.++|||...++|+.||.+.+||++..+.... 
T Consensus       151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys-  229 (315)
T KOG0279|consen  151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS-  229 (315)
T ss_pred             EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe-
Confidence            9999999943 6789999999999999999988765 789999999999999999999999999999999998776322 


Q ss_pred             EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--eeEe----ec---CCCCCeEEEEEecCCCEEEE
Q 006424          408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFK----GL---PKSGSQMSASFTTTGKHIIS  478 (645)
Q Consensus       408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~~~~----~~---~~~~~i~~v~~sp~~~~l~t  478 (645)
                        +.     +...|.+++|+|+.  +.++...+..|+|||+....  ..+.    +.   ...-...+++|++||..|++
T Consensus       230 --l~-----a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~  300 (315)
T KOG0279|consen  230 --LE-----AFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA  300 (315)
T ss_pred             --cc-----CCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence              22     24789999999994  66666666779999976322  2221    11   11223567899999999999


Q ss_pred             EeCCccEEEEeCC
Q 006424          479 IGDDCRVYVWNYD  491 (645)
Q Consensus       479 ~s~dg~I~iwd~~  491 (645)
                      |-.|+.|++|.+.
T Consensus       301 g~td~~irv~qv~  313 (315)
T KOG0279|consen  301 GYTDNVIRVWQVA  313 (315)
T ss_pred             eecCCcEEEEEee
Confidence            9999999999874

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.4e-35  Score=287.15  Aligned_cols=425  Identities=20%  Similarity=0.224  Sum_probs=299.8

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee-eeEecCC-CC---cccCCCCceEEe-cccCCCcce
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS-CKSFTDD-GG---FGSNAKEGKIKF-GKKKSSHVP  265 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~-~~~~~~~-~~---~~~~~~~~~~~~-~~~~~~~~~  265 (645)
                      ....+.+|...++-..|||.|-|+|+|...|+|||||....... ...+..- +.   +.......++.. +.-+.....
T Consensus        51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~  130 (603)
T KOG0318|consen   51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH  130 (603)
T ss_pred             ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence            35567789999999999999999999999999999998763221 1111111 11   111111111111 111111112


Q ss_pred             eecCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCE
Q 006424          266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY  342 (645)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~  342 (645)
                      .+.++     .+..+..+.||...|+++.|-|..  +++||+.|++|.+|+-...+...+++ |..-|+|+.|+| |+.+
T Consensus       131 ~F~~D-----SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~  204 (603)
T KOG0318|consen  131 VFLWD-----SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSR  204 (603)
T ss_pred             EEEec-----CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CCCe
Confidence            22222     256678899999999999999986  89999999999999977666666665 888999999999 9999


Q ss_pred             EEEEeCCCcEEEEeCCCCcEEE-ee---ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424          343 FISGSIDGKVRIWGVCEKRVVD-WA---DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  418 (645)
Q Consensus       343 l~s~s~dg~i~vwd~~~~~~~~-~~---~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  418 (645)
                      +++++.||++.+||-.+++.+. +.   .|.+.|.+++|+||++.+++++.|.++++||+.+..+.. .+.+...   ..
T Consensus       205 Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~-t~~~~~~---v~  280 (603)
T KOG0318|consen  205 FATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS-TWPMGST---VE  280 (603)
T ss_pred             EEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE-EeecCCc---hh
Confidence            9999999999999999887665 33   689999999999999999999999999999999886543 3333322   12


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCC
Q 006424          419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS  498 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~  498 (645)
                      ..-..+.|..   ..|++.+.+|.|.+++...+........|...|+++..+|++++|++|+.||.|.-|+..++..-..
T Consensus       281 dqqvG~lWqk---d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~  357 (603)
T KOG0318|consen  281 DQQVGCLWQK---DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL  357 (603)
T ss_pred             ceEEEEEEeC---CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc
Confidence            3344556763   3799999999999999875554444455999999999999999999999999999999876642110


Q ss_pred             ---cccC-----------------------------------------CcceeeeeecCC--------------------
Q 006424          499 ---KQKN-----------------------------------------SVRSCEHFFSEG--------------------  514 (645)
Q Consensus       499 ---~~~~-----------------------------------------~~~~~~~~~~~g--------------------  514 (645)
                         .|..                                         ....++....++                    
T Consensus       358 ~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~  437 (603)
T KOG0318|consen  358 AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV  437 (603)
T ss_pred             ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc
Confidence               0000                                         000011111111                    


Q ss_pred             -------cEEEEecCCCCccccccCCCCccccCcccc-ccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCC
Q 006424          515 -------VSVAVQWPGIGTEQKSLCSSSLRDCSQKWD-NLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV  586 (645)
Q Consensus       515 -------~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~  586 (645)
                             ...+++.+|++..++..+.|+-.+.+.+-. .+........|...++.++||||+.++++++. .+++.+||.
T Consensus       438 ~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-~rkvv~yd~  516 (603)
T KOG0318|consen  438 SSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-SRKVVLYDV  516 (603)
T ss_pred             eeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc-CCcEEEEEc
Confidence                   112344556666665555544322222111 22333356778889999999999999999998 899999999


Q ss_pred             ccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424          587 TIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                      .+.+..        ...-.+|......++++| +..+++|||.|.+|.||.+.
T Consensus       517 ~s~~~~--------~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  517 ASREVK--------TNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             ccCcee--------cceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEcc
Confidence            988310        112234555555567777 68999999999999999874

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9e-37  Score=308.52  Aligned_cols=415  Identities=17%  Similarity=0.203  Sum_probs=308.1

Q ss_pred             cccccccc-ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEe--cccCCCcceee
Q 006424          191 YTSQEIQA-HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKF--GKKKSSHVPVV  267 (645)
Q Consensus       191 ~~~~~l~~-H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  267 (645)
                      ...+.+++ |+++|.-++|+|.|..|++|+.||.+++||+..+.+........+........+....  .........+ 
T Consensus        95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v-  173 (775)
T KOG0319|consen   95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTV-  173 (775)
T ss_pred             hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceE-
Confidence            35566677 9999999999999999999999999999999987665444332322211111111100  0011111111 


Q ss_pred             cCCCceecc--CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe--------------------
Q 006424          268 IPDEVFQIE--ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--------------------  324 (645)
Q Consensus       268 ~~~~~~~~~--~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~--------------------  324 (645)
                         .+|+..  ...+..+..|.+.|++++|++++ .+++++.|..+.+||+.+.+...+.                    
T Consensus       174 ---~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~  250 (775)
T KOG0319|consen  174 ---RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG  250 (775)
T ss_pred             ---EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence               223332  12467788999999999999887 8999999999999996432211111                    


Q ss_pred             ----------------------------------------------------------------------cCCCcEEEEE
Q 006424          325 ----------------------------------------------------------------------DHHNYVTCVQ  334 (645)
Q Consensus       325 ----------------------------------------------------------------------~~~~~v~~l~  334 (645)
                                                                                            +.++.|..++
T Consensus       251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~  330 (775)
T KOG0319|consen  251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK  330 (775)
T ss_pred             eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence                                                                                  1223355555


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccc
Q 006424          335 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  414 (645)
Q Consensus       335 ~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  414 (645)
                      |--.+.++++++++.+.+++|+..+..+.-+.+|...|.++....+|.+|++|+.|.++++|.++++.....   .....
T Consensus       331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~---~~a~~  407 (775)
T KOG0319|consen  331 FLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL---CVAQA  407 (775)
T ss_pred             ecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhh---hhhhh
Confidence            543366788888888888888888888888899999999999777889999999999999999954443222   22334


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-------ce--eeEeecCCCCCeEEEEEecCCCEEEEEeCCccE
Q 006424          415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-------VI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRV  485 (645)
Q Consensus       415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-------~~--~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I  485 (645)
                      .+|.+.|.+++++..+..+++++|.|+++++|++..       ..  ..+....|...|++++++|+.+++||||.|.+.
T Consensus       408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta  487 (775)
T KOG0319|consen  408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA  487 (775)
T ss_pred             cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce
Confidence            557789999999998889999999999999999764       11  112335689999999999999999999999999


Q ss_pred             EEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc--cccCCccCCCCccccCcc
Q 006424          486 YVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN--LETAPWIRDSERFSLGSW  563 (645)
Q Consensus       486 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~  563 (645)
                      +||+++.....          ...-.|...+..|.|+|....|++++.|   ..+++|..  .+....+.+|.+-+.-..
T Consensus       488 KiW~le~~~l~----------~vLsGH~RGvw~V~Fs~~dq~laT~SgD---~TvKIW~is~fSClkT~eGH~~aVlra~  554 (775)
T KOG0319|consen  488 KIWDLEQLRLL----------GVLSGHTRGVWCVSFSKNDQLLATCSGD---KTVKIWSISTFSCLKTFEGHTSAVLRAS  554 (775)
T ss_pred             eeecccCceEE----------EEeeCCccceEEEEeccccceeEeccCC---ceEEEEEeccceeeeeecCccceeEeee
Confidence            99999854211          1111234456788999999999888877   44667766  566678899999999999


Q ss_pred             ccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCC-CcceEEEEecCCCeEeEEE
Q 006424          564 FSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISA-TWGLVIVTAGCDGMIKTFH  637 (645)
Q Consensus       564 fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~ivt~s~Dg~Iriw~  637 (645)
                      |-.+|+.++|+.. +|-|++|++.++           .+......|.+.+.+++. +++.+++|||.||.|.+|+
T Consensus       555 F~~~~~qliS~~a-dGliKlWnikt~-----------eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  555 FIRNGKQLISAGA-DGLIKLWNIKTN-----------ECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             eeeCCcEEEeccC-CCcEEEEeccch-----------hhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            9999999999888 999999999999           566777778887776652 3577999999999999997

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.6e-35  Score=285.99  Aligned_cols=373  Identities=18%  Similarity=0.256  Sum_probs=280.1

Q ss_pred             cccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424          188 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  267 (645)
Q Consensus       188 ~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (645)
                      +++....+++.|..-|+|+.|+|||.++||++.||+|.+||=.+++                                  
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge----------------------------------  223 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE----------------------------------  223 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc----------------------------------
Confidence            4555667788999999999999999999999999999999988743                                  


Q ss_pred             cCCCceeccCCCceeec---cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCC----CcEEEEEEeeCC
Q 006424          268 IPDEVFQIEESPLQELH---GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH----NYVTCVQFNPID  339 (645)
Q Consensus       268 ~~~~~~~~~~~~~~~l~---~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~----~~v~~l~~~p~~  339 (645)
                                 .+..+.   +|.+.|.+++|+||+ +++|+|.|.+++|||+.+.+++.++...    +.-..+-|   .
T Consensus       224 -----------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW---q  289 (603)
T KOG0318|consen  224 -----------KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW---Q  289 (603)
T ss_pred             -----------EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE---e
Confidence                       344444   899999999999998 9999999999999999999999988532    23334456   3


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424          340 DNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  418 (645)
Q Consensus       340 ~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  418 (645)
                      ...|++.+.+|+|.+++....... .+.+|...|+++..+|++++|++|+.||.|.-|+...+..-..      ....|.
T Consensus       290 kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~------~g~~h~  363 (603)
T KOG0318|consen  290 KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL------AGKGHT  363 (603)
T ss_pred             CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc------cccccc
Confidence            678999999999999999877654 4789999999999999999999999999999999987654211      112345


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--------------ce-------------------eeEee------cC
Q 006424          419 NKITGIQFSRDESQRIMITSEDSKLRILDGVD--------------VI-------------------HKFKG------LP  459 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--------------~~-------------------~~~~~------~~  459 (645)
                      ..|.+++-+..+  .+++.+.|.++++.++..              +.                   ..++.      ..
T Consensus       364 nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~  441 (603)
T KOG0318|consen  364 NQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP  441 (603)
T ss_pred             ceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec
Confidence            788888888754  688889999999886420              00                   00000      00


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCcccc
Q 006424          460 KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDC  539 (645)
Q Consensus       460 ~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~  539 (645)
                      -.-...+++++|++..++.|+.||.|+||.+........        .....+.+.+..++++||+.+|++....   +.
T Consensus       442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee--------~~~~~h~a~iT~vaySpd~~yla~~Da~---rk  510 (603)
T KOG0318|consen  442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE--------AKLLEHRAAITDVAYSPDGAYLAAGDAS---RK  510 (603)
T ss_pred             cccccceEEEcCCCCEEEEecccceEEEEEecCCcccce--------eeeecccCCceEEEECCCCcEEEEeccC---Cc
Confidence            122346789999999999999999999999987642111        1123356788899999999999865543   33


Q ss_pred             CccccccccCC---ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccC
Q 006424          540 SQKWDNLETAP---WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAI  616 (645)
Q Consensus       540 ~~~w~~~~~~~---~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (645)
                      +..|+......   ...-|...+.+++|||+.+++|+++. |-.|.||++..-.       .. ......|...  +..+
T Consensus       511 vv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl-Dt~Viiysv~kP~-------~~-i~iknAH~~g--Vn~v  579 (603)
T KOG0318|consen  511 VVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL-DTNVIIYSVKKPA-------KH-IIIKNAHLGG--VNSV  579 (603)
T ss_pred             EEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc-cceEEEEEccChh-------hh-eEeccccccC--ceeE
Confidence            44555533332   23346678899999999999999999 9999999987541       11 1222233333  2222


Q ss_pred             CCCcceEEEEecCCCeEeEEEe
Q 006424          617 SATWGLVIVTAGCDGMIKTFHN  638 (645)
Q Consensus       617 ~~~d~~~ivt~s~Dg~Iriw~~  638 (645)
                      .=.|...+||+|.|..||+|++
T Consensus       580 ~wlde~tvvSsG~Da~iK~W~v  601 (603)
T KOG0318|consen  580 AWLDESTVVSSGQDANIKVWNV  601 (603)
T ss_pred             EEecCceEEeccCcceeEEecc
Confidence            2235788999999999999986

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-35  Score=280.61  Aligned_cols=337  Identities=20%  Similarity=0.351  Sum_probs=266.3

Q ss_pred             ccccccccCCCCcccccChHhHHHHHHHHHHhhccc-chhhccccCCCCCCCCccchhHhhhcccccccccccccccccc
Q 006424          119 SQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRN-VETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQ  197 (645)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (645)
                      .....+|+.|+++..++|.+++.-++++....|+.. +++. +-+.           +.......-...--+.+..+.|.
T Consensus       154 ~~ll~elskyi~p~illP~rRLehLl~qAv~~Q~d~cvyhn-slds-----------vsll~Dh~c~~~qip~qt~qil~  221 (519)
T KOG0293|consen  154 DKLLDELSKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHN-SLDS-----------VSLLSDHFCGRLQIPSQTWQILQ  221 (519)
T ss_pred             HHHHHHHHhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhc-ccch-----------hhhhhhcccCcccCCchhhhhHh
Confidence            445678889999999999999999999999988863 2222 1000           11111111111223445778899


Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .|++.|+-+.||++|+||||++.|.+..+|.+....                                          .-
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~------------------------------------------~~  259 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV------------------------------------------HF  259 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc------------------------------------------ce
Confidence            999999999999999999999999999999986521                                          12


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCC--CcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      +..+++.||..+|..+.||||. +|++|+.|..+.+||+.+|.....+.+.  ..+.+++|.| |+..+++|+.|+++..
T Consensus       260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~  338 (519)
T KOG0293|consen  260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIM  338 (519)
T ss_pred             eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEE
Confidence            4467889999999999999986 9999999999999999999999888754  7899999999 9999999999999999


Q ss_pred             EeCCCCcEEEeeccC-CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424          355 WGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  433 (645)
Q Consensus       355 wd~~~~~~~~~~~~~-~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~  433 (645)
                      ||+.+.....+.+.+ ..|.+++.++||+++++.+.|..|++|+..+..... .  ...     ..+|++++.|.+| .+
T Consensus       339 wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-l--ise-----~~~its~~iS~d~-k~  409 (519)
T KOG0293|consen  339 WDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-L--ISE-----EQPITSFSISKDG-KL  409 (519)
T ss_pred             ecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-c--ccc-----cCceeEEEEcCCC-cE
Confidence            999988877766654 459999999999999999999999999987654321 1  111     3789999999998 89


Q ss_pred             EEEEECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeee
Q 006424          434 IMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF  510 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  510 (645)
                      +++.-.+..+++||+.+  ....+.++.....+..-+|.- +..++++||+|+.|+||+..+++.....          -
T Consensus       410 ~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L----------s  479 (519)
T KOG0293|consen  410 ALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL----------S  479 (519)
T ss_pred             EEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee----------c
Confidence            99999999999999884  445666766666788888865 4589999999999999999888432211          1


Q ss_pred             ecCCcEEEEecCCCCcccc
Q 006424          511 FSEGVSVAVQWPGIGTEQK  529 (645)
Q Consensus       511 ~~~g~~~~v~~s~~~~~l~  529 (645)
                      .|...+..|+|+|....+.
T Consensus       480 GHs~~vNcVswNP~~p~m~  498 (519)
T KOG0293|consen  480 GHSKTVNCVSWNPADPEMF  498 (519)
T ss_pred             CCcceeeEEecCCCCHHHh
Confidence            2345577888888766544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-36  Score=278.55  Aligned_cols=301  Identities=19%  Similarity=0.335  Sum_probs=250.0

Q ss_pred             ChHhHHHHHHHHHHhhccc--chhhccccCCCCCCCCccchhHhhhcccccccccccccccccccccCcEEEEEECCCCC
Q 006424          136 NIKKVKKLWKRIISMKKRN--VETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGR  213 (645)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~  213 (645)
                      +...+.+.|....+.++.-  ++...++...+.......     ........+.+++.+.+.+.+|..+|+.+-|+|+-.
T Consensus        47 ~g~ll~kkwtSv~rlqKki~~Les~l~~~~~el~~g~pt-----~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~  121 (406)
T KOG0295|consen   47 DGGLLEKKWTSVDRLQKKIRELESKLDETGDELIAGDPT-----GSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEA  121 (406)
T ss_pred             ccceeeccccccchhHHHHHHHHhhhcccccccccCCCC-----cCccChhhcCCCCCchhhhhccccceeeeeeccCce
Confidence            4567778888887777763  344444444333222111     112223347788889999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEE
Q 006424          214 YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDL  293 (645)
Q Consensus       214 ~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  293 (645)
                      .+++++.|++|++||..+                                             ++....++||...|.++
T Consensus       122 ~v~~as~d~tikv~D~~t---------------------------------------------g~~e~~LrGHt~sv~di  156 (406)
T KOG0295|consen  122 LVVSASEDATIKVFDTET---------------------------------------------GELERSLRGHTDSVFDI  156 (406)
T ss_pred             EEEEecCCceEEEEEccc---------------------------------------------hhhhhhhhccccceeEE
Confidence            999999999999999998                                             45578899999999999


Q ss_pred             EEcCCC-eEEEEeCCCcEEEEecCC-CeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccC
Q 006424          294 AWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVR  369 (645)
Q Consensus       294 ~~s~~~-~l~s~s~dg~I~iwd~~~-~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~  369 (645)
                      +|+..| ++++++.|-.+++||..+ .++++.. +|...|.+++|-| .++++++++.|.+|+.|++.++.++. +.+|.
T Consensus       157 ~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~  235 (406)
T KOG0295|consen  157 SFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHS  235 (406)
T ss_pred             EEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCch
Confidence            999888 899999999999999976 3444443 6888999999999 88999999999999999999988765 78899


Q ss_pred             CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC--------------CCcEEE
Q 006424          370 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD--------------ESQRIM  435 (645)
Q Consensus       370 ~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~--------------g~~~l~  435 (645)
                      ..|..+..+.||..+++++.|.++++|-+.+......       .+.|..+|-|++|.|.              +.+++.
T Consensus       236 ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~-------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~  308 (406)
T KOG0295|consen  236 EWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE-------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLG  308 (406)
T ss_pred             HhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh-------hhccccceEEEEecccccCcchhhccCCCCCccEEE
Confidence            9999999999999999999999999999988754322       2234578888888763              226999


Q ss_pred             EEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          436 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      +++.|++|++||+..+...+....|...|.+++|+|.|+||+++.+|+++++||+++.+
T Consensus       309 s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~  367 (406)
T KOG0295|consen  309 SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ  367 (406)
T ss_pred             eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence            99999999999999888888888899999999999999999999999999999999874

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.6e-36  Score=289.88  Aligned_cols=277  Identities=23%  Similarity=0.449  Sum_probs=238.3

Q ss_pred             ccccccccccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424          189 ALYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  267 (645)
Q Consensus       189 ~~~~~~~l~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (645)
                      +..+..++.||+..|+++.|.| .+.+|++|+.|+.|+||++..                                    
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~------------------------------------  246 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD------------------------------------  246 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec------------------------------------
Confidence            3446778999999999999999 899999999999999999976                                    


Q ss_pred             cCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424          268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                              ++..++++.||..+|.+++|+++| .++|+|.|+.|++||+++|+++..+.....++|+.|+|.+.+.+++|
T Consensus       247 --------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G  318 (503)
T KOG0282|consen  247 --------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG  318 (503)
T ss_pred             --------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe
Confidence                    367899999999999999999998 89999999999999999999999999999999999999555999999


Q ss_pred             eCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          347 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      +.|+.|+.||++++++++ +..|-+.|..+.|-++|+++++.+.|+++++|+.+..-.........      .....++.
T Consensus       319 ~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~------~hsmP~~~  392 (503)
T KOG0282|consen  319 GSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE------MHTMPCLT  392 (503)
T ss_pred             cCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh------hccCccee
Confidence            999999999999999776 66788899999999999999999999999999998665432222222      24677899


Q ss_pred             EcCCCCcEEEEEECCCeEEEEECC-----cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424          426 FSRDESQRIMITSEDSKLRILDGV-----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ  500 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg~I~iwd~~-----~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~  500 (645)
                      .+|++ .++++-+.|+.|.++.+.     +....+.++...+.-..+.|||||.+|++|+.||.+.+||.++.+..... 
T Consensus       393 ~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l-  470 (503)
T KOG0282|consen  393 LHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL-  470 (503)
T ss_pred             cCCCC-CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc-
Confidence            99998 799999999999999865     34566777777788899999999999999999999999999876432221 


Q ss_pred             cCCcceeeeeecCCcEEEEecCCCCc
Q 006424          501 KNSVRSCEHFFSEGVSVAVQWPGIGT  526 (645)
Q Consensus       501 ~~~~~~~~~~~~~g~~~~v~~s~~~~  526 (645)
                               -.+++.++.+.|+|...
T Consensus       471 ---------kah~~~ci~v~wHP~e~  487 (503)
T KOG0282|consen  471 ---------KAHDQPCIGVDWHPVEP  487 (503)
T ss_pred             ---------ccCCcceEEEEecCCCc
Confidence                     12367788899988743

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.1e-34  Score=252.67  Aligned_cols=273  Identities=19%  Similarity=0.352  Sum_probs=230.0

Q ss_pred             CCccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccC
Q 006424          169 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN  248 (645)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  248 (645)
                      ...+..++.|+....       ...++++...+.|+.+...||++.||+|+.- .||+||+.+..               
T Consensus        16 A~YDhTIRfWqa~tG-------~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~n---------------   72 (311)
T KOG0315|consen   16 AGYDHTIRFWQALTG-------ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNN---------------   72 (311)
T ss_pred             ccCcceeeeeehhcC-------eEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCC---------------
Confidence            344455555544332       2567787778899999999999999998865 59999998742               


Q ss_pred             CCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCC
Q 006424          249 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH  327 (645)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~  327 (645)
                                                  ..++.++.+|...|+++.|..+| .+++||.||+++|||++...+.+.+.|.
T Consensus        73 ----------------------------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~  124 (311)
T KOG0315|consen   73 ----------------------------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN  124 (311)
T ss_pred             ----------------------------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC
Confidence                                        35789999999999999999888 8999999999999999999999999999


Q ss_pred             CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceee
Q 006424          328 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  405 (645)
Q Consensus       328 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~  405 (645)
                      .+|+++..+| +...|++|..+|.|++||+....+..  .......|.++...|||.+++.+...|++++|++-+.....
T Consensus       125 spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s  203 (311)
T KOG0315|consen  125 SPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS  203 (311)
T ss_pred             CCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence            9999999999 88899999999999999999875543  44556789999999999999999999999999998754433


Q ss_pred             eEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-eeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424          406 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR  484 (645)
Q Consensus       406 ~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~  484 (645)
                      .... ....+.|...+..+.+||++ ++|++++.|.+++||+.... ........|...+..++||.||+||+||+.|+.
T Consensus       204 ~l~P-~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~  281 (311)
T KOG0315|consen  204 ELEP-VHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT  281 (311)
T ss_pred             cceE-hhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCc
Confidence            3222 22355667889999999998 89999999999999998865 334445568889999999999999999999999


Q ss_pred             EEEEeCCCCCc
Q 006424          485 VYVWNYDELCF  495 (645)
Q Consensus       485 I~iwd~~~~~~  495 (645)
                      +++|++..++.
T Consensus       282 ~rlW~~~~~k~  292 (311)
T KOG0315|consen  282 ARLWDLSAGKE  292 (311)
T ss_pred             eeecccccCce
Confidence            99999998863

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.6e-34  Score=273.81  Aligned_cols=271  Identities=21%  Similarity=0.344  Sum_probs=232.1

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      ..|++++|+.+|..||+|+.||.++||+..                                              +..+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~----------------------------------------------G~l~  269 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD----------------------------------------------GNLI  269 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecC----------------------------------------------chhh
Confidence            469999999999999999999999999986                                              4567


Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  358 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  358 (645)
                      .++..|+++|.++.|+..| +|++++.|+++.+||..++...+.+. |..+-..+.|-  +...|++++.|+.|+|+.+.
T Consensus       270 ~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~  347 (524)
T KOG0273|consen  270 STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVG  347 (524)
T ss_pred             hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEec
Confidence            7888999999999999887 99999999999999999999999997 55555778997  57789999999999999997


Q ss_pred             CCcE-EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC------
Q 006424          359 EKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES------  431 (645)
Q Consensus       359 ~~~~-~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~------  431 (645)
                      .... .++.+|.+.|.++.|+|.|.+|++++.|+++++|.+.......       ....|...|..+.|+|.|+      
T Consensus       348 ~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~-------~l~~Hskei~t~~wsp~g~v~~n~~  420 (524)
T KOG0273|consen  348 EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH-------DLQAHSKEIYTIKWSPTGPVTSNPN  420 (524)
T ss_pred             CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh-------hhhhhccceeeEeecCCCCccCCCc
Confidence            7554 5688899999999999999999999999999999987655421       2233457899999998753      


Q ss_pred             --cEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeee
Q 006424          432 --QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  509 (645)
Q Consensus       432 --~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  509 (645)
                        ..+++++.|++|++||+...........|..+|.+++|+|+|+|+|+|+.||.|.+|+.+.++...           .
T Consensus       421 ~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~-----------s  489 (524)
T KOG0273|consen  421 MNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK-----------S  489 (524)
T ss_pred             CCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE-----------e
Confidence              579999999999999999887777777799999999999999999999999999999999874322           2


Q ss_pred             eecCCcEEEEecCCCCccccccCCCCcc
Q 006424          510 FFSEGVSVAVQWPGIGTEQKSLCSSSLR  537 (645)
Q Consensus       510 ~~~~g~~~~v~~s~~~~~l~~~~~~~~~  537 (645)
                      ...++.+..++|+.+|..|..+.+++..
T Consensus       490 ~~~~~~Ifel~Wn~~G~kl~~~~sd~~v  517 (524)
T KOG0273|consen  490 YQGTGGIFELCWNAAGDKLGACASDGSV  517 (524)
T ss_pred             ecCCCeEEEEEEcCCCCEEEEEecCCCc
Confidence            3345668899999999888877776553

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1e-33  Score=251.28  Aligned_cols=272  Identities=19%  Similarity=0.324  Sum_probs=224.4

Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEE
Q 006424          213 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  292 (645)
Q Consensus       213 ~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  292 (645)
                      -+|+|+|.|.+||+|...+                                             +...++++...+.|+.
T Consensus        11 viLvsA~YDhTIRfWqa~t---------------------------------------------G~C~rTiqh~dsqVNr   45 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALT---------------------------------------------GICSRTIQHPDSQVNR   45 (311)
T ss_pred             eEEEeccCcceeeeeehhc---------------------------------------------CeEEEEEecCccceee
Confidence            4899999999999999988                                             4556777767789999


Q ss_pred             EEEcCCCeEEEEeCCCcEEEEecCCCe--EEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccC
Q 006424          293 LAWSNSNYLLSCSMDKTVRMWQVGCNQ--CLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR  369 (645)
Q Consensus       293 l~~s~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  369 (645)
                      +...|++..++++....|++||++++.  ++.+|. |.+.|+++.|.. +++.+++|++||+++|||++...+.+...+.
T Consensus        46 LeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~  124 (311)
T KOG0315|consen   46 LEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN  124 (311)
T ss_pred             EEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhccCC
Confidence            999999854444455789999998765  467775 889999999999 9999999999999999999998888888999


Q ss_pred             CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424          370 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV  449 (645)
Q Consensus       370 ~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~  449 (645)
                      .+|+++..+|+...|++|..+|.|++||+.........+.      .....|.++...||| .+++++...|..++|++-
T Consensus       125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP------e~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~  197 (311)
T KOG0315|consen  125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP------EDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLL  197 (311)
T ss_pred             CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC------CCCcceeeEEEcCCC-cEEEEecCCccEEEEEcc
Confidence            9999999999999999999999999999998765333222      224789999999998 799999999999999954


Q ss_pred             c------ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCC
Q 006424          450 D------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG  523 (645)
Q Consensus       450 ~------~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~  523 (645)
                      .      .....+...|.+.+..+.+|||+++||++|.|.+++||+.++- ....                         
T Consensus       198 ~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle-------------------------  251 (311)
T KOG0315|consen  198 NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLE-------------------------  251 (311)
T ss_pred             CCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeE-------------------------
Confidence            2      2222234558999999999999999999999999999998754 0000                         


Q ss_pred             CCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCC
Q 006424          524 IGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDS  590 (645)
Q Consensus       524 ~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~  590 (645)
                                                ....++++++-..+||.||++|++++. |...++|++..++
T Consensus       252 --------------------------~~l~gh~rWvWdc~FS~dg~YlvTass-d~~~rlW~~~~~k  291 (311)
T KOG0315|consen  252 --------------------------LVLTGHQRWVWDCAFSADGEYLVTASS-DHTARLWDLSAGK  291 (311)
T ss_pred             --------------------------EEeecCCceEEeeeeccCccEEEecCC-CCceeecccccCc
Confidence                                      002334556667789999999999987 8999999999883

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.2e-33  Score=255.92  Aligned_cols=281  Identities=25%  Similarity=0.398  Sum_probs=237.8

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      ...+.+|++.|+.+.|+|+|.+||||+.|..|.+|++..                                         
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-----------------------------------------   78 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG-----------------------------------------   78 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc-----------------------------------------
Confidence            345789999999999999999999999999999999765                                         


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                         +.+....+++|++.|..+.|.+++ .+++++.|.+|+.||+++|+++..+. |.+-|+.+.-+.....++.+++.|+
T Consensus        79 ---dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~  155 (338)
T KOG0265|consen   79 ---DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDG  155 (338)
T ss_pred             ---cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCc
Confidence               244566778999999999999987 99999999999999999999999886 8888888885554556788999999


Q ss_pred             cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          351 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      ++++||++++........+..++++.|...+..+.+|+-|+.|++||++.+.....   ..    +|..+|+.+..+|+|
T Consensus       156 t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~---ls----Gh~DtIt~lsls~~g  228 (338)
T KOG0265|consen  156 TLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT---LS----GHADTITGLSLSRYG  228 (338)
T ss_pred             eEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE---ee----cccCceeeEEeccCC
Confidence            99999999999998888899999999999999999999999999999987765432   22    346899999999998


Q ss_pred             CcEEEEEECCCeEEEEECC------cceeeEeecCCCC--CeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC
Q 006424          431 SQRIMITSEDSKLRILDGV------DVIHKFKGLPKSG--SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN  502 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~~------~~~~~~~~~~~~~--~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~  502 (645)
                       .++++-+.|.++++||.+      .++..+.++.|.-  ....++|+|++..+.+|+.|..+++||.......      
T Consensus       229 -s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l------  301 (338)
T KOG0265|consen  229 -SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL------  301 (338)
T ss_pred             -CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEE------
Confidence             899999999999999976      3466677755543  4567799999999999999999999998764211      


Q ss_pred             CcceeeeeecCCcEEEEecCCCCccccccCCCC
Q 006424          503 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS  535 (645)
Q Consensus       503 ~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~  535 (645)
                          .....+.|.+..+.|+|....|.++++|.
T Consensus       302 ----yklpGh~gsvn~~~Fhp~e~iils~~sdk  330 (338)
T KOG0265|consen  302 ----YKLPGHYGSVNEVDFHPTEPIILSCSSDK  330 (338)
T ss_pred             ----EEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence                11233567788888898888888777764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.6e-33  Score=254.45  Aligned_cols=287  Identities=16%  Similarity=0.243  Sum_probs=243.2

Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      +..++++||.+.|.++.|+++. +++++|.||.+.|||.-+...++.+. ...+|..++|+| .++++|+|+.|+...||
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIY  124 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEE
Confidence            3458899999999999999987 89999999999999998888777776 567999999999 99999999999999999


Q ss_pred             eCCCC--c-----EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          356 GVCEK--R-----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       356 d~~~~--~-----~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      ++.+.  +     ...+.+|.+.+.++.|-+ ...|++++.|.++.+||+++......   +++    |.+.|.++.++|
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~---f~G----H~gDV~slsl~p  196 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQV---FHG----HTGDVMSLSLSP  196 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEE---ecC----CcccEEEEecCC
Confidence            99754  1     234789999999999987 55789999999999999998876433   444    468999999999


Q ss_pred             CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceee
Q 006424          429 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  508 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  508 (645)
                      ...+.+++|+-|+..++||++..........|...|+++.|.|+|.-+++|++|++.++||++..+......        
T Consensus       197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys--------  268 (343)
T KOG0286|consen  197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS--------  268 (343)
T ss_pred             CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec--------
Confidence            435999999999999999999665555555599999999999999999999999999999999764222111        


Q ss_pred             eeecCCcEEEEecCCCCccccccCCCCccccCccccccccCC--ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCC
Q 006424          509 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP--WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD  585 (645)
Q Consensus       509 ~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd  585 (645)
                      .-.....++.++|+..|.+|+....|   ....+|+.+.+..  .+.+|+..+.++..+|||..+++++| |..++||.
T Consensus       269 ~~~~~~gitSv~FS~SGRlLfagy~d---~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSW-Ds~lriW~  343 (343)
T KOG0286|consen  269 HDSIICGITSVAFSKSGRLLFAGYDD---FTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSW-DSTLRIWA  343 (343)
T ss_pred             cCcccCCceeEEEcccccEEEeeecC---CceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecch-hHheeecC
Confidence            11123457899999999999977665   5567899987776  77899999999999999999999999 99999994

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.8e-33  Score=259.51  Aligned_cols=327  Identities=15%  Similarity=0.223  Sum_probs=261.0

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      -..+|..|+++|.+++.+|+.++++||+.|..-.+|++.+                                        
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~----------------------------------------   95 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST----------------------------------------   95 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccC----------------------------------------
Confidence            3567889999999999999999999999999999999987                                        


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                           +.....+.+|+..|+++.|+.++ +|+||+.+|.|+||+..++.....+. .-..+.-+.|+| ...+|+.|+.|
T Consensus        96 -----ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~D  169 (399)
T KOG0296|consen   96 -----GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTD  169 (399)
T ss_pred             -----CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCC
Confidence                 34567888999999999999998 99999999999999999998877775 556788899999 99999999999


Q ss_pred             CcEEEEeCCC-CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          350 GKVRIWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       350 g~i~vwd~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      |.+-+|.+.+ +.+..+.+|..++++=.|.|+|+.++++..||+|++|+..+.......-...      +....++.++.
T Consensus       170 GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e------~~~~~~~~~~~  243 (399)
T KOG0296|consen  170 GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE------GLELPCISLNL  243 (399)
T ss_pred             CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc------cCcCCcccccc
Confidence            9999999988 5566688999999999999999999999999999999999886543321111      35677888888


Q ss_pred             CCCcEEEEEECCCeEEEEECCcceeeEeec--------CCCC---CeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424          429 DESQRIMITSEDSKLRILDGVDVIHKFKGL--------PKSG---SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  497 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~--------~~~~---~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~  497 (645)
                      .+ ..++.|+.++.+++.+...........        .+..   .|-.+.++..-.+.|+|+-||+|.|||+...... 
T Consensus       244 ~~-~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R-  321 (399)
T KOG0296|consen  244 AG-STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR-  321 (399)
T ss_pred             cc-ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh-
Confidence            86 788899999988888754332222211        1223   3445556666788999999999999999865211 


Q ss_pred             CcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCC
Q 006424          498 SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWP  577 (645)
Q Consensus       498 ~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~  577 (645)
                               . .+.+...++.+.|-+ ..+|++.+.                                            
T Consensus       322 ---------~-~c~he~~V~~l~w~~-t~~l~t~c~--------------------------------------------  346 (399)
T KOG0296|consen  322 ---------H-ICEHEDGVTKLKWLN-TDYLLTACA--------------------------------------------  346 (399)
T ss_pred             ---------e-eccCCCceEEEEEcC-cchheeecc--------------------------------------------
Confidence                     1 122333466777776 555443333                                            


Q ss_pred             CCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCC-CCcceEEEEecCCCeEeEEEe
Q 006424          578 AEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAIS-ATWGLVIVTAGCDGMIKTFHN  638 (645)
Q Consensus       578 d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~ivt~s~Dg~Iriw~~  638 (645)
                      +|+|+.||..+|           .+...+.+|..++..|. .++++++||+|.|++.+||+.
T Consensus       347 ~g~v~~wDaRtG-----------~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  347 NGKVRQWDARTG-----------QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             CceEEeeecccc-----------ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            788999999999           56667777777777665 348999999999999999985

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=9.1e-33  Score=257.01  Aligned_cols=303  Identities=17%  Similarity=0.278  Sum_probs=248.0

Q ss_pred             cccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCc
Q 006424          184 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  263 (645)
Q Consensus       184 ~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (645)
                      ..|-.+..+.+.+++|.+.|.|+++.|...+++||+.|++|+|||+.+                                
T Consensus       135 PeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat--------------------------------  182 (460)
T KOG0285|consen  135 PEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT--------------------------------  182 (460)
T ss_pred             ccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc--------------------------------
Confidence            335566677889999999999999999999999999999999999998                                


Q ss_pred             ceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCC
Q 006424          264 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN  341 (645)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~  341 (645)
                                   ++...++.||-..|..+++++.. ++++++.|+.|+.||++.++.++.+ +|-+.|.|++.+| .-+
T Consensus       183 -------------g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tld  248 (460)
T KOG0285|consen  183 -------------GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLD  248 (460)
T ss_pred             -------------CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc-cce
Confidence                         56677899999999999999876 9999999999999999999998877 6999999999999 889


Q ss_pred             EEEEEeCCCcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          342 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      .|++|+.|.++++||+++...+ .+.+|..+|.++.+.|-...+++|+.|++|++||++.++...... .      |...
T Consensus       249 vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt-~------hkks  321 (460)
T KOG0285|consen  249 VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT-H------HKKS  321 (460)
T ss_pred             eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee-c------ccce
Confidence            9999999999999999997655 477899999999999988899999999999999999887643321 1      2478


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ  500 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~  500 (645)
                      +.+++.+|.. ..+++++.| .|+-|++...........|...|++++...|+ ++++|+++|.|.+||.+++......+
T Consensus       322 vral~lhP~e-~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~  398 (460)
T KOG0285|consen  322 VRALCLHPKE-NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQ  398 (460)
T ss_pred             eeEEecCCch-hhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccc
Confidence            9999999996 667776665 68999987544433344588889999987664 88899999999999999885333221


Q ss_pred             cCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccc
Q 006424          501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE  547 (645)
Q Consensus       501 ~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~  547 (645)
                      ..  ..--....+..+++.+|...|..|.+...|   ..+.+|...+
T Consensus       399 t~--vqpGSl~sEagI~as~fDktg~rlit~ead---KtIk~~keDe  440 (460)
T KOG0285|consen  399 TI--VQPGSLESEAGIFASCFDKTGSRLITGEAD---KTIKMYKEDE  440 (460)
T ss_pred             cc--ccCCccccccceeEEeecccCceEEeccCC---cceEEEeccc
Confidence            11  111123345567899999999999987776   4456666644

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-31  Score=271.51  Aligned_cols=401  Identities=17%  Similarity=0.226  Sum_probs=291.9

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC----------ceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV----------AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      +...|++++.||+|.+|++....|...+-++...          ...+..++|++.+.+.+....+.++......... +
T Consensus        54 ~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~-~  132 (893)
T KOG0291|consen   54 TRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNE-F  132 (893)
T ss_pred             cCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcc-c
Confidence            5556777777777777777777776666554432          2344555666555544444444333332221110 0


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEE
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~  344 (645)
                      .      .....+++.||-..|.++.|+.|. +|++||.|.++++|+++..+....+   +|.+.|.++-|.. +...++
T Consensus       133 ~------pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~-~~~~l~  205 (893)
T KOG0291|consen  133 N------PFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA-NSLDLY  205 (893)
T ss_pred             C------cceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc-CcceEE
Confidence            0      123356778999999999999886 8999999999999999876653333   5999999999988 888899


Q ss_pred             EEeCCCcEEEEeCCC------------------------Cc----EE-------EeeccCCCeEEEEEccCCCEEEEEec
Q 006424          345 SGSIDGKVRIWGVCE------------------------KR----VV-------DWADVRDVISAICYIPDGKGFIVGSI  389 (645)
Q Consensus       345 s~s~dg~i~vwd~~~------------------------~~----~~-------~~~~~~~~v~~l~~sp~g~~l~~g~~  389 (645)
                      +.+.||.+.+|....                        .+    ..       .+......+++.+|++..+.|++|-.
T Consensus       206 tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs  285 (893)
T KOG0291|consen  206 TVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS  285 (893)
T ss_pred             EEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec
Confidence            999999999997651                        11    00       11223367999999999999999999


Q ss_pred             CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-CeEEEEECCcceeeEeecCCCCCeEEEE
Q 006424          390 TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGLPKSGSQMSAS  468 (645)
Q Consensus       390 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-g~I~iwd~~~~~~~~~~~~~~~~i~~v~  468 (645)
                      .|...+|.+...... .......      .+|..++|+..| .+++.|+.. |.+-||+.....-.++...|...+++++
T Consensus       286 sG~f~LyelP~f~li-h~LSis~------~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~  357 (893)
T KOG0291|consen  286 SGEFGLYELPDFNLI-HSLSISD------QKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA  357 (893)
T ss_pred             CCeeEEEecCCceEE-EEeeccc------ceeeEEEecccC-CEEEEcCCccceEEEEEeeccceeeeccccccceeeEE
Confidence            999999999877653 2333332      689999999988 788888765 8999999887777777777999999999


Q ss_pred             EecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee-cCCcEEEEecCCCCccccccCCCCccccCccccccc
Q 006424          469 FTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE  547 (645)
Q Consensus       469 ~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~  547 (645)
                      ++|||+++|||++||.|+|||..++           .....|. |...+.++.|+..+..+.+++-|+.   ++.|+-..
T Consensus       358 YSpDgq~iaTG~eDgKVKvWn~~Sg-----------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGt---VRAwDlkR  423 (893)
T KOG0291|consen  358 YSPDGQLIATGAEDGKVKVWNTQSG-----------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT---VRAWDLKR  423 (893)
T ss_pred             ECCCCcEEEeccCCCcEEEEeccCc-----------eEEEEeccCCCceEEEEEEecCCEEEEeecCCe---EEeeeecc
Confidence            9999999999999999999999887           2233444 6677889999999999987776644   45565522


Q ss_pred             cC--CccCC-CCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCc--cCCCCcce
Q 006424          548 TA--PWIRD-SERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR--AISATWGL  622 (645)
Q Consensus       548 ~~--~~~~~-~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~  622 (645)
                      ..  +.+.. .+....+++..|.|..+..++...=.|++|++++|           ++.....+|.+.+.  .|++ +|.
T Consensus       424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-----------qllDiLsGHEgPVs~l~f~~-~~~  491 (893)
T KOG0291|consen  424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-----------QLLDILSGHEGPVSGLSFSP-DGS  491 (893)
T ss_pred             cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-----------eeeehhcCCCCcceeeEEcc-ccC
Confidence            11  11122 23345667778889988888774458999999999           34444555555554  4666 699


Q ss_pred             EEEEecCCCeEeEEEecCc
Q 006424          623 VIVTAGCDGMIKTFHNYGL  641 (645)
Q Consensus       623 ~ivt~s~Dg~Iriw~~~g~  641 (645)
                      .|+|||+|.|||+|++|+-
T Consensus       492 ~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  492 LLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             eEEeccccceEEEEEeecc
Confidence            9999999999999999864

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-33  Score=282.93  Aligned_cols=378  Identities=15%  Similarity=0.238  Sum_probs=288.9

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      -.+.|++++.+||+++|++++..+.+++|++.+                                             ++
T Consensus        61 d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~t---------------------------------------------gk   95 (775)
T KOG0319|consen   61 DEDEITALALTPDEEVLVTASRSQLLRVWSLPT---------------------------------------------GK   95 (775)
T ss_pred             chhhhheeeecCCccEEEEeeccceEEEEEccc---------------------------------------------ch
Confidence            455799999999999999999999999999997                                             45


Q ss_pred             Cceeecc-CccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCC--EEEEEeCCCcEE
Q 006424          279 PLQELHG-HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDN--YFISGSIDGKVR  353 (645)
Q Consensus       279 ~~~~l~~-h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~--~l~s~s~dg~i~  353 (645)
                      .++.++. |++||.-++|+|.+ .+++|+.|+.|+|||+..+.+...|. |++.|.++.|+| +.+  .|++|..|++++
T Consensus        96 ~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~-~~~~~lL~sg~~D~~v~  174 (775)
T KOG0319|consen   96 LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHP-HWNRWLLASGATDGTVR  174 (775)
T ss_pred             HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCC-ccchhheeecCCCceEE
Confidence            6777777 99999999999987 89999999999999999999999995 899999999999 544  489999999999


Q ss_pred             EEeCCCCcE--EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-------------------------
Q 006424          354 IWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-------------------------  406 (645)
Q Consensus       354 vwd~~~~~~--~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-------------------------  406 (645)
                      +||++.+..  .....|.+.|+++.|++|+..+++++.|..+.+||+...+....                         
T Consensus       175 vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~  254 (775)
T KOG0319|consen  175 VWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYII  254 (775)
T ss_pred             EEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEE
Confidence            999986554  34678999999999999999999999999999998742110000                         


Q ss_pred             ---------EEe-----------------------------------------e-----------------------cc-
Q 006424          407 ---------KVD-----------------------------------------F-----------------------HD-  412 (645)
Q Consensus       407 ---------~~~-----------------------------------------~-----------------------~~-  412 (645)
                               .+.                                         +                       -+ 
T Consensus       255 TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~  334 (775)
T KOG0319|consen  255 TAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGP  334 (775)
T ss_pred             EecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCC
Confidence                     000                                         0                       00 


Q ss_pred             -------------------------ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc----ceeeEeecCCCCC
Q 006424          413 -------------------------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGS  463 (645)
Q Consensus       413 -------------------------~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~  463 (645)
                                               ...+|...|.++....+| .+|++++.|.++++|.+.+    ....-....|...
T Consensus       335 e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s  413 (775)
T KOG0319|consen  335 EESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS  413 (775)
T ss_pred             ccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence                                     001144555566644454 6999999999999997632    2222233558889


Q ss_pred             eEEEEEecCC-CEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCcc
Q 006424          464 QMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQK  542 (645)
Q Consensus       464 i~~v~~sp~~-~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~  542 (645)
                      |.+++++..+ .+++++|.|+++++|++...+.... ..........-.|+..+++|+.+|+...+++.+.|   ...++
T Consensus       414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD---ktaKi  489 (775)
T KOG0319|consen  414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD---KTAKI  489 (775)
T ss_pred             cceeeecccCccEEEEecCCceEEEecCCCcccccc-cceehhhHHHHhhcccccceEecCCCceEEecccc---cceee
Confidence            9999997654 5899999999999999987321111 11111111233467788999999999999988777   44567


Q ss_pred             ccccccCC--ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccC-CCC
Q 006424          543 WDNLETAP--WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAI-SAT  619 (645)
Q Consensus       543 w~~~~~~~--~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  619 (645)
                      |+..+...  .+.+|.+-+-++.|++..+.++++|. |.+|+||.+++.+           +...+.+|.+-+... +-.
T Consensus       490 W~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg-D~TvKIW~is~fS-----------ClkT~eGH~~aVlra~F~~  557 (775)
T KOG0319|consen  490 WDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSG-DKTVKIWSISTFS-----------CLKTFEGHTSAVLRASFIR  557 (775)
T ss_pred             ecccCceEEEEeeCCccceEEEEeccccceeEeccC-CceEEEEEeccce-----------eeeeecCccceeEeeeeee
Confidence            77653332  78899999999999999999999998 9999999999882           344455555555322 233


Q ss_pred             cceEEEEecCCCeEeEEEec
Q 006424          620 WGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       620 d~~~ivt~s~Dg~Iriw~~~  639 (645)
                      +|..|+||+.||.|++|++.
T Consensus       558 ~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  558 NGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             CCcEEEeccCCCcEEEEecc
Confidence            68899999999999999953

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.7e-32  Score=280.79  Aligned_cols=275  Identities=25%  Similarity=0.361  Sum_probs=218.6

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      +..-...++|..|++|++.||.|-.|..|++|.+.........-.......           ......   ...+...+.
T Consensus       374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~-----------d~~sad---~~~~~~D~~  439 (707)
T KOG0263|consen  374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNI-----------DTESAD---VDVDMLDDD  439 (707)
T ss_pred             EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccc-----------cccccc---hhhhhcccc
Confidence            333445699999999999999999999999999885211000000000000           000000   000011111


Q ss_pred             cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVR  353 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~  353 (645)
                      .......+.||.++|..+.|+|+. +|++||.|++|++|.+.+..++-.+ +|..+|+++.|+| .|.+||+++.|++.+
T Consensus       440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tAr  518 (707)
T KOG0263|consen  440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTAR  518 (707)
T ss_pred             CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceee
Confidence            234456689999999999999997 9999999999999999999988877 4999999999999 899999999999999


Q ss_pred             EEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424          354 IWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       354 vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                      +|........+ +.+|-..|.|+.|+|++.|+++|+.|.++++||..++.... .  +.    +|..+|++++|+|+| .
T Consensus       519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR-i--F~----GH~~~V~al~~Sp~G-r  590 (707)
T KOG0263|consen  519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR-I--FT----GHKGPVTALAFSPCG-R  590 (707)
T ss_pred             eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEE-E--ec----CCCCceEEEEEcCCC-c
Confidence            99988766555 67899999999999999999999999999999999887632 2  22    356999999999998 8


Q ss_pred             EEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          433 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       433 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +|++|+.||.|.+||+...........|.+.|.++.||.+|..||+||.|.+|++||+...
T Consensus       591 ~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  591 YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999999999999998865544444557999999999999999999999999999998765

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.1e-32  Score=259.44  Aligned_cols=330  Identities=17%  Similarity=0.268  Sum_probs=250.0

Q ss_pred             cccccccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          194 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      +.+. |+.+|.+++|+|-.. .|++|+.|-+.++|++.........                                  
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~----------------------------------  217 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST----------------------------------  217 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch----------------------------------
Confidence            3344 999999999999766 9999999999999998741000000                                  


Q ss_pred             eeccCCCceeecc----CccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEE
Q 006424          273 FQIEESPLQELHG----HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       273 ~~~~~~~~~~l~~----h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                       +..-+....+.+    -...|++++|+.+| .|++|+.||.+++|+.. |..+.++ .|.++|.++.|+. .+++|+++
T Consensus       218 -q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk-~G~yilS~  294 (524)
T KOG0273|consen  218 -QLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNK-KGTYILSG  294 (524)
T ss_pred             -hhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcC-CCCEEEec
Confidence             000000000111    24679999999988 99999999999999987 5555555 5999999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCcEEEeec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          347 SIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      +.|+++.+||..++....... |..+-..+.|-. ...+++.+.||.|+++.+...........       |.+.|.++.
T Consensus       295 ~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~G-------H~g~V~alk  366 (524)
T KOG0273|consen  295 GVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIG-------HHGEVNALK  366 (524)
T ss_pred             cCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeec-------ccCceEEEE
Confidence            999999999999988877444 444446788854 45789999999999999987665433222       358999999


Q ss_pred             EcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC---------CEEEEEeCCccEEEEeCCCCCcC
Q 006424          426 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG---------KHIISIGDDCRVYVWNYDELCFP  496 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~---------~~l~t~s~dg~I~iwd~~~~~~~  496 (645)
                      |+|.| .+|++++.|++++||+..+....-..+.|...|..+.|+|+|         ..+++++.|++|++||+..+.. 
T Consensus       367 ~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~-  444 (524)
T KOG0273|consen  367 WNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP-  444 (524)
T ss_pred             ECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce-
Confidence            99998 899999999999999977555544555689999999999975         4699999999999999987711 


Q ss_pred             CCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCC
Q 006424          497 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATW  576 (645)
Q Consensus       497 ~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~  576 (645)
                                          +..                                +..|...|++++|||+|+++++++.
T Consensus       445 --------------------i~~--------------------------------f~kH~~pVysvafS~~g~ylAsGs~  472 (524)
T KOG0273|consen  445 --------------------IHT--------------------------------LMKHQEPVYSVAFSPNGRYLASGSL  472 (524)
T ss_pred             --------------------eEe--------------------------------eccCCCceEEEEecCCCcEEEecCC
Confidence                                000                                1235566778888999999999998


Q ss_pred             CCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCc---cCCCCcceEEEEecCCCeEeEEEe
Q 006424          577 PAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR---AISATWGLVIVTAGCDGMIKTFHN  638 (645)
Q Consensus       577 ~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~ivt~s~Dg~Iriw~~  638 (645)
                       |+.+.+|+++++           +   ..+...+...   -....+|..|..+-.||.+++-++
T Consensus       473 -dg~V~iws~~~~-----------~---l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  473 -DGCVHIWSTKTG-----------K---LVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             -CCeeEeccccch-----------h---eeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence             999999999998           2   2333333322   122446788888888999998775

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.9e-32  Score=279.06  Aligned_cols=208  Identities=30%  Similarity=0.539  Sum_probs=188.9

Q ss_pred             ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      .....++|.||+++|..+.|+|+.++|+++|.|+++|+|.+.+                                     
T Consensus       440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-------------------------------------  482 (707)
T KOG0263|consen  440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-------------------------------------  482 (707)
T ss_pred             CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeeccc-------------------------------------
Confidence            3445667999999999999999999999999999999999987                                     


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEE
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                              ...+..++||..+|+++.|+|.| +++|||.|++.++|.....++++.+ +|-+.|.|+.|+| +.+++++|
T Consensus       483 --------~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTG  553 (707)
T KOG0263|consen  483 --------WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATG  553 (707)
T ss_pred             --------ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccC
Confidence                    44567888999999999999999 8999999999999999999999888 5999999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          347 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      |.|.+|++||+.++..++ +.+|.++|.+++|+|+|++|++|+.||.|.+||+.++.....       ...|.+.|.++.
T Consensus       554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~-------l~~Ht~ti~Sls  626 (707)
T KOG0263|consen  554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ-------LKGHTGTIYSLS  626 (707)
T ss_pred             CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh-------hhcccCceeEEE
Confidence            999999999999988776 789999999999999999999999999999999998775433       222358999999


Q ss_pred             EcCCCCcEEEEEECCCeEEEEECCc
Q 006424          426 FSRDESQRIMITSEDSKLRILDGVD  450 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg~I~iwd~~~  450 (645)
                      |+.+| ..|++|+.|.+|++||+..
T Consensus       627 FS~dg-~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  627 FSRDG-NVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EecCC-CEEEecCCCCeEEEEEchh
Confidence            99998 8999999999999999764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-31  Score=235.37  Aligned_cols=273  Identities=25%  Similarity=0.461  Sum_probs=229.2

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      .+.|..|+++|..+.|+-||+|.++++.|++|++|+...                                         
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-----------------------------------------   48 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-----------------------------------------   48 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc-----------------------------------------
Confidence            456889999999999999999999999999999999876                                         


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                          +..++++.||..+|..++.+.|+ .+++|+.|..|.+||+.+|+.++.++ |...|+.++|+. +...+++|+.|.
T Consensus        49 ----g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~  123 (307)
T KOG0316|consen   49 ----GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDS  123 (307)
T ss_pred             ----cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccc
Confidence                56789999999999999998877 99999999999999999999999996 999999999998 889999999999


Q ss_pred             cEEEEeCCCCc--EEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424          351 KVRIWGVCEKR--VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  427 (645)
Q Consensus       351 ~i~vwd~~~~~--~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s  427 (645)
                      ++++||-++..  +++ +....+.|.++..+  +..+++|+.||+++.||++.+.....   ..      +.+|+|++|+
T Consensus       124 s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sD---y~------g~pit~vs~s  192 (307)
T KOG0316|consen  124 SVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSD---YF------GHPITSVSFS  192 (307)
T ss_pred             eeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehh---hc------CCcceeEEec
Confidence            99999998754  333 45667788888875  56799999999999999998876432   22      3789999999


Q ss_pred             CCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcc
Q 006424          428 RDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR  505 (645)
Q Consensus       428 ~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~  505 (645)
                      +++ +..++++.|+++++.|-.  +....++++.+...-...++.....++++||+||.|++||+.+........     
T Consensus       193 ~d~-nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~-----  266 (307)
T KOG0316|consen  193 KDG-NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS-----  266 (307)
T ss_pred             CCC-CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec-----
Confidence            998 899999999999999955  567778887777777888899889999999999999999998774322211     


Q ss_pred             eeeeeecCCc-EEEEecCCCCccccccCC
Q 006424          506 SCEHFFSEGV-SVAVQWPGIGTEQKSLCS  533 (645)
Q Consensus       506 ~~~~~~~~g~-~~~v~~s~~~~~l~~~~~  533 (645)
                           .+... +..+++.|.-..+.....
T Consensus       267 -----~~~~v~v~dl~~hp~~~~f~~A~~  290 (307)
T KOG0316|consen  267 -----VVSTVIVTDLSCHPTMDDFITATG  290 (307)
T ss_pred             -----cCCceeEEeeecccCccceeEecC
Confidence                 12222 566777777666664444

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.5e-32  Score=259.97  Aligned_cols=296  Identities=17%  Similarity=0.271  Sum_probs=239.8

Q ss_pred             cccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424          186 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  265 (645)
Q Consensus       186 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (645)
                      .+...+.......-+..|..+.|.|+|+.|++|+..|.+.+|+..+                                  
T Consensus        82 ~~~tKf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~----------------------------------  127 (464)
T KOG0284|consen   82 AFTTKFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS----------------------------------  127 (464)
T ss_pred             ccccceEeccccccccceeeEEEcCCCceeEeecccccEEEecCce----------------------------------
Confidence            3333333333444566899999999999999999999999998754                                  


Q ss_pred             eecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEE
Q 006424          266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF  343 (645)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l  343 (645)
                                 ......++.|..+|+++.|++++ +++||+.+|.|++|+..-........ |...|++++|+| +...|
T Consensus       128 -----------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp-nDskF  195 (464)
T KOG0284|consen  128 -----------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP-NDSKF  195 (464)
T ss_pred             -----------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCC-CCcee
Confidence                       11224566899999999999988 99999999999999987544444444 448999999999 88899


Q ss_pred             EEEeCCCcEEEEeCCCCcE-EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424          344 ISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       344 ~s~s~dg~i~vwd~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      ++++.||+|+|||....+. ..+.+|.-.|.+++|+|...++++|+.|..|++||.+++.....   ++.    |...|.
T Consensus       196 ~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t---lh~----HKntVl  268 (464)
T KOG0284|consen  196 LTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT---LHG----HKNTVL  268 (464)
T ss_pred             EEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh---hhh----ccceEE
Confidence            9999999999999876544 34688999999999999999999999999999999998876433   233    357899


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecC-CCEEEEEeCCccEEEEeCCCCCcCCCccc
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSSKQK  501 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~-~~~l~t~s~dg~I~iwd~~~~~~~~~~~~  501 (645)
                      .+.|+|++ ++|++++.|..++++|++.....+....|...++++.|+|- ..+|.+|+.||.|..|.+...+       
T Consensus       269 ~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~-------  340 (464)
T KOG0284|consen  269 AVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE-------  340 (464)
T ss_pred             EEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc-------
Confidence            99999998 99999999999999999966555666669999999999995 5678889999999999987331       


Q ss_pred             CCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccc
Q 006424          502 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE  547 (645)
Q Consensus       502 ~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~  547 (645)
                        ....+.+.+++.+..++|+|-|..|++.+.|   +.+++|....
T Consensus       341 --p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd---~t~rfw~r~r  381 (464)
T KOG0284|consen  341 --PLGEIPPAHDGEIWSLAYHPLGHILATGSND---RTVRFWTRNR  381 (464)
T ss_pred             --cccCCCcccccceeeeeccccceeEeecCCC---cceeeeccCC
Confidence              1122245578889999999999999986665   5567787643

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5e-33  Score=263.22  Aligned_cols=246  Identities=19%  Similarity=0.355  Sum_probs=210.0

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      ..+++|..+|+++.|+++|.+++||+.+|.|++|+..-                                          
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm------------------------------------------  169 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM------------------------------------------  169 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch------------------------------------------
Confidence            34678999999999999999999999999999998753                                          


Q ss_pred             eccCCCceeeccCc-cCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          274 QIEESPLQELHGHK-GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       274 ~~~~~~~~~l~~h~-~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                          ..++.+.+|. ..|++++|+|+. .+++||.||+|+|||....+....+ +|.-.|.+++|+| ...++++|+.|.
T Consensus       170 ----nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDn  244 (464)
T KOG0284|consen  170 ----NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDN  244 (464)
T ss_pred             ----hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCc
Confidence                3345555555 999999999865 9999999999999999877776666 5888999999999 888999999999


Q ss_pred             cEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          351 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       351 ~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      .|++||.+++.++. +..|+..|..+.|+|++++|++++.|..+++||+++.+...       ..+.|...++++.|+|-
T Consensus       245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~-------~~r~Hkkdv~~~~WhP~  317 (464)
T KOG0284|consen  245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF-------TYRGHKKDVTSLTWHPL  317 (464)
T ss_pred             eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH-------Hhhcchhhheeeccccc
Confidence            99999999988765 78899999999999999999999999999999999543221       12334578999999998


Q ss_pred             CCcEEEEEECCCeEEEEECC-cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          430 ESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ...+|.+|+.||.|..|.+. +.-.......|...|.+++|+|-|..|++|+.|.++++|.-...
T Consensus       318 ~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  318 NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             cccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence            77899999999999999976 21122223558999999999999999999999999999986543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.4e-31  Score=266.83  Aligned_cols=427  Identities=16%  Similarity=0.188  Sum_probs=287.1

Q ss_pred             CCCCccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcc
Q 006424          167 SEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG  246 (645)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~  246 (645)
                      +-...+..++++.....       ...-++.||+.+|+++.|...|..|||||.|+.|.+||+-................
T Consensus        81 AVGYaDGsVqif~~~s~-------~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT  153 (888)
T KOG0306|consen   81 AVGYADGSVQIFSLESE-------EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSIT  153 (888)
T ss_pred             EEEecCceEEeeccCCC-------ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHh
Confidence            33444455554444322       24456889999999999999999999999999999999976433322221111110


Q ss_pred             cCCC--CceEEecccCCCcceeecCCCceeccCCCceeec-cCccCeEEEEEcCCCeEEEEeCCCcEEEEecCC------
Q 006424          247 SNAK--EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC------  317 (645)
Q Consensus       247 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~------  317 (645)
                      ....  ...+.+....  ..    .-+.|+++.+...... .|.+.|+.+++.+ ..+++++.|+.+++|++..      
T Consensus       154 ~~~F~~~~~~lvS~sK--Ds----~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~~D~~~  226 (888)
T KOG0306|consen  154 QALFLNGDSFLVSVSK--DS----MIKFWDLETQHCFETHVDHRGEIWALVLDE-KLLVTAGTDSELKVWELAFEDDEKE  226 (888)
T ss_pred             HHhccCCCeEEEEecc--Cc----eEEEEecccceeeeEEecccceEEEEEEec-ceEEEEecCCceEEEEeeccccccc
Confidence            0000  0011100000  00    0144555554444443 5778888888876 6778888888888887610      


Q ss_pred             ----------C--------eEEEE--------------------------------------------------------
Q 006424          318 ----------N--------QCLNV--------------------------------------------------------  323 (645)
Q Consensus       318 ----------~--------~~~~~--------------------------------------------------------  323 (645)
                                |        +.+..                                                        
T Consensus       227 ~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~s  306 (888)
T KOG0306|consen  227 TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKS  306 (888)
T ss_pred             ccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhh
Confidence                      0        00000                                                        


Q ss_pred             ---------------------------------------------------------------ecCCCcEEEEEEeeCCC
Q 006424          324 ---------------------------------------------------------------FDHHNYVTCVQFNPIDD  340 (645)
Q Consensus       324 ---------------------------------------------------------------~~~~~~v~~l~~~p~~~  340 (645)
                                                                                     .+|...|.+++++. +.
T Consensus       307 l~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d~  385 (888)
T KOG0306|consen  307 LSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-DS  385 (888)
T ss_pred             HHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec-Cc
Confidence                                                                           12444566777765 44


Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          341 NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       341 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      ..+++|+ .+.+++|+..+.+++...... .+.+..|-|.++++++|...|.+.+||+...... +      ....|.+.
T Consensus       386 ~~~~Sga-~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~-E------ti~AHdga  456 (888)
T KOG0306|consen  386 ILLASGA-GESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLV-E------TIRAHDGA  456 (888)
T ss_pred             eeeeecC-CCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhh-h------hhhccccc
Confidence            4444443 567888888877777655554 6777888888888888888888888888765531 1      23356789


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECCc-------ceeeEee-----cCCCCCeEEEEEecCCCEEEEEeCCccEEEE
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGVD-------VIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVW  488 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-------~~~~~~~-----~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iw  488 (645)
                      |.+++.+||+ ..+++|+.|.+|++||..-       ....+..     ..-...|.++.+||||++||.+=-|.+++||
T Consensus       457 IWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy  535 (888)
T KOG0306|consen  457 IWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY  535 (888)
T ss_pred             eeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence            9999999998 8999999999999999431       1111111     1235679999999999999999999999999


Q ss_pred             eCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc--cccCCccCCCCccccCccccC
Q 006424          489 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN--LETAPWIRDSERFSLGSWFSN  566 (645)
Q Consensus       489 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~fs~  566 (645)
                      -+++.+....          .+.|.=+++++.-+||+..+++.+.|   ..+++|-.  -+++.-+-.|+..+.++-|-|
T Consensus       536 flDtlKFfls----------LYGHkLPV~smDIS~DSklivTgSAD---KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P  602 (888)
T KOG0306|consen  536 FLDTLKFFLS----------LYGHKLPVLSMDISPDSKLIVTGSAD---KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP  602 (888)
T ss_pred             Eecceeeeee----------ecccccceeEEeccCCcCeEEeccCC---CceEEeccccchhhhhhhcccCceeEEEEcc
Confidence            9998753322          23344456677777777777766655   45666655  344556777888999999999


Q ss_pred             CCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCC--CccCCCCcceEEEEecCCCeEeEEEecCcccc
Q 006424          567 DGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDD--VRAISATWGLVIVTAGCDGMIKTFHNYGLPIR  644 (645)
Q Consensus       567 dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~ivt~s~Dg~Iriw~~~g~~~~  644 (645)
                      +.....+++. |++++-||...-           ...+....|...  ..++++ +|.++||+|.|.+||+|..--.++.
T Consensus       603 ~~~~FFt~gK-D~kvKqWDg~kF-----------e~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE~tde~~~  669 (888)
T KOG0306|consen  603 KTHLFFTCGK-DGKVKQWDGEKF-----------EEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWERTDEILI  669 (888)
T ss_pred             cceeEEEecC-cceEEeechhhh-----------hhheeeccchheeeeeEEcC-CCCeEEeccCCceeEeeeccCccee
Confidence            9988899998 999999998766           223333344433  355666 5999999999999999998776654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2e-31  Score=243.18  Aligned_cols=299  Identities=19%  Similarity=0.258  Sum_probs=247.0

Q ss_pred             ccccchhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCC
Q 006424           90 SEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEK  169 (645)
Q Consensus        90 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (645)
                      +..+.-+..|.+|..+|+...|.|++.. +++...            |..+-.|                          
T Consensus        34 s~l~ap~m~l~gh~geI~~~~F~P~gs~-~aSgG~------------Dr~I~LW--------------------------   74 (338)
T KOG0265|consen   34 SSLQAPIMLLPGHKGEIYTIKFHPDGSC-FASGGS------------DRAIVLW--------------------------   74 (338)
T ss_pred             ccccchhhhcCCCcceEEEEEECCCCCe-EeecCC------------cceEEEE--------------------------
Confidence            4456667789999999999999997665 666555            4433333                          


Q ss_pred             CccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCC
Q 006424          170 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA  249 (645)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  249 (645)
                               +....+.      -.-.+++|+++|..+.|.+|++.|+++|.|++|+.||+++                  
T Consensus        75 ---------nv~gdce------N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t------------------  121 (338)
T KOG0265|consen   75 ---------NVYGDCE------NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET------------------  121 (338)
T ss_pred             ---------ecccccc------ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc------------------
Confidence                     1111111      1223669999999999999999999999999999999998                  


Q ss_pred             CCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCC
Q 006424          250 KEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHH  327 (645)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~  327 (645)
                                                 ++.++.+++|..-|+.+.-+.-|  .+.|++.|+++++||+++..+++++...
T Consensus       122 ---------------------------G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k  174 (338)
T KOG0265|consen  122 ---------------------------GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK  174 (338)
T ss_pred             ---------------------------ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc
Confidence                                       56678889999999999844445  6779999999999999999999999989


Q ss_pred             CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424          328 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  406 (645)
Q Consensus       328 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~  406 (645)
                      ..++++.|.. .+..+++|+-|+.|++||++.+.... +.+|.+.|+.+..+|+|.++.+-+.|.++++||++.......
T Consensus       175 yqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R  253 (338)
T KOG0265|consen  175 YQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR  253 (338)
T ss_pred             eeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence            9999999998 88899999999999999998877654 789999999999999999999999999999999986554433


Q ss_pred             EEe-eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccE
Q 006424          407 KVD-FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRV  485 (645)
Q Consensus       407 ~~~-~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I  485 (645)
                      .+. +.++....+.....++|+|++ ..+.+|+.|..+++||.......+....|.+.|++++|+|...+|.+++.|.+|
T Consensus       254 ~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i  332 (338)
T KOG0265|consen  254 CVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI  332 (338)
T ss_pred             eEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence            221 233322334456778999997 899999999999999988777778888899999999999999999999999999


Q ss_pred             EEEe
Q 006424          486 YVWN  489 (645)
Q Consensus       486 ~iwd  489 (645)
                      ++=.
T Consensus       333 ~lge  336 (338)
T KOG0265|consen  333 YLGE  336 (338)
T ss_pred             Eeec
Confidence            8743

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1e-31  Score=254.38  Aligned_cols=294  Identities=19%  Similarity=0.238  Sum_probs=234.1

Q ss_pred             hhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchh
Q 006424           96 VDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKM  175 (645)
Q Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (645)
                      .+.|.+|.+|||.+.|++++.+ ++++++            |.+...|-                               
T Consensus       217 ~qil~~htdEVWfl~FS~nGky-LAsaSk------------D~Taiiw~-------------------------------  252 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKY-LASASK------------DSTAIIWI-------------------------------  252 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCee-EeeccC------------CceEEEEE-------------------------------
Confidence            4578899999999999999999 999988            44444430                               


Q ss_pred             HhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEE
Q 006424          176 EVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK  255 (645)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (645)
                              .....++.+.+++.+|..+|..+.||||.+||++++.|..+++||+.++..                     
T Consensus       253 --------v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~---------------------  303 (519)
T KOG0293|consen  253 --------VVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL---------------------  303 (519)
T ss_pred             --------EecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh---------------------
Confidence                    001122457788999999999999999999999999999999999998533                     


Q ss_pred             ecccCCCcceeecCCCceeccCCCceee-ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec--CCCcEE
Q 006424          256 FGKKKSSHVPVVIPDEVFQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVT  331 (645)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~  331 (645)
                                              ...+ .+|...+.+++|.||+ .+++|+.|+++..||++... ....+  ....|.
T Consensus       304 ------------------------~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~  358 (519)
T KOG0293|consen  304 ------------------------RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVH  358 (519)
T ss_pred             ------------------------hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeE
Confidence                                    2222 2457889999999999 89999999999999997443 33332  335699


Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeec
Q 006424          332 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH  411 (645)
Q Consensus       332 ~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  411 (645)
                      +++..+ ||+++++.+.|..|++|+..+...........+|++++.+.+++++++.-.+..+++||+........   +.
T Consensus       359 dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k---Y~  434 (519)
T KOG0293|consen  359 DLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK---YF  434 (519)
T ss_pred             EEEEcC-CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH---hh
Confidence            999999 99999999999999999998877766777788999999999999999999999999999996655433   22


Q ss_pred             cccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC-CEEEEEeCCccEEEEeC
Q 006424          412 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNY  490 (645)
Q Consensus       412 ~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~-~~l~t~s~dg~I~iwd~  490 (645)
                      ++..  +..+..-+|--.+..++++|++|+.|+||+...........+|...|++++|+|.. .++|++|+||+|+||..
T Consensus       435 Ghkq--~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  435 GHKQ--GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             cccc--cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence            3222  23455556665444799999999999999977554444445589999999999965 57899999999999987


Q ss_pred             CCC
Q 006424          491 DEL  493 (645)
Q Consensus       491 ~~~  493 (645)
                      ...
T Consensus       513 ~~~  515 (519)
T KOG0293|consen  513 SDN  515 (519)
T ss_pred             Ccc
Confidence            643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=9.5e-30  Score=288.70  Aligned_cols=303  Identities=16%  Similarity=0.311  Sum_probs=228.2

Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      .+..|.+.|++++|+|+|++||+|+.||.|+||++........                                     
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-------------------------------------  520 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-------------------------------------  520 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-------------------------------------
Confidence            3556999999999999999999999999999999764100000                                     


Q ss_pred             ccCCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                      ....+...+. +...|.+++|++.  .+|++++.||+|++||+.+++.+..+ .|...|++++|+|.++.+|++|+.|++
T Consensus       521 ~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~  599 (793)
T PLN00181        521 DIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS  599 (793)
T ss_pred             ccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE
Confidence            0011222333 3467999999874  38999999999999999999888877 488999999999757889999999999


Q ss_pred             EEEEeCCCCcEEEeeccCCCeEEEEEc-cCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          352 VRIWGVCEKRVVDWADVRDVISAICYI-PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       352 i~vwd~~~~~~~~~~~~~~~v~~l~~s-p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      |++||++++.......+...+.++.|+ ++|.++++|+.||.|++||++........+      ..|...|.++.|.+ +
T Consensus       600 v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~------~~h~~~V~~v~f~~-~  672 (793)
T PLN00181        600 VKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM------IGHSKTVSYVRFVD-S  672 (793)
T ss_pred             EEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe------cCCCCCEEEEEEeC-C
Confidence            999999988877655566789999995 579999999999999999998765332222      23457899999974 4


Q ss_pred             CcEEEEEECCCeEEEEECCc--------ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC
Q 006424          431 SQRIMITSEDSKLRILDGVD--------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN  502 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~~~--------~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~  502 (645)
                       .++++++.|+.|++||+..        ....+.  .|...+..++|+|++++|++|+.||.|++|+........     
T Consensus       673 -~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~-----  744 (793)
T PLN00181        673 -STLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVL-----  744 (793)
T ss_pred             -CEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceE-----
Confidence             6899999999999999863        223333  477889999999999999999999999999976441100     


Q ss_pred             CcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCC
Q 006424          503 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP  582 (645)
Q Consensus       503 ~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~  582 (645)
                         .. .+...+.+..                               .....+...+.+++|++++..+++++. +|.|+
T Consensus       745 ---s~-~~~~~~~~~~-------------------------------~~~~~~~~~V~~v~ws~~~~~lva~~~-dG~I~  788 (793)
T PLN00181        745 ---SY-KFKTIDPVSG-------------------------------LEVDDASQFISSVCWRGQSSTLVAANS-TGNIK  788 (793)
T ss_pred             ---EE-ecccCCcccc-------------------------------cccCCCCcEEEEEEEcCCCCeEEEecC-CCcEE
Confidence               00 0000000000                               001223456778888888888888887 88999


Q ss_pred             CCCC
Q 006424          583 LWDV  586 (645)
Q Consensus       583 iWd~  586 (645)
                      +|++
T Consensus       789 i~~~  792 (793)
T PLN00181        789 ILEM  792 (793)
T ss_pred             EEec
Confidence            9975

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=1.7e-29  Score=227.32  Aligned_cols=231  Identities=22%  Similarity=0.382  Sum_probs=183.8

Q ss_pred             CceeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCC---CeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          279 PLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGC---NQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~---~~~~~~~--~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                      .++.+.+|.+.+..++|+|. | .|+||+.|+.|++|+...   -.+...+  .|...|+.++|+| .+++|++||.|.+
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t   84 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDAT   84 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccce
Confidence            36788899999999999998 6 799999999999999985   3344444  4999999999999 9999999999999


Q ss_pred             EEEEeCCCCc---EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          352 VRIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       352 i~vwd~~~~~---~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      +.||.-..+.   .-.+.+|...|.+++|+++|++||+++.|..|-||.+..... ...   ..-...|...|..+.|+|
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-fec---~aVL~~HtqDVK~V~WHP  160 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-FEC---IAVLQEHTQDVKHVIWHP  160 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-EEE---EeeeccccccccEEEEcC
Confidence            9999876554   334789999999999999999999999999999999984332 222   222334567899999999


Q ss_pred             CCCcEEEEEECCCeEEEEECC---c--ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCC
Q 006424          429 DESQRIMITSEDSKLRILDGV---D--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS  503 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~---~--~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~  503 (645)
                      .. .+|++++.|++|++|+-.   .  +.+.+.+  |...|.+++|++.|..|+++++|++++||.+...-         
T Consensus       161 t~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---------  228 (312)
T KOG0645|consen  161 TE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---------  228 (312)
T ss_pred             Cc-ceeEEeccCCeEEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCceEEEecCCcceEeeeeccCc---------
Confidence            85 799999999999999854   2  3444444  77799999999999999999999999999965320         


Q ss_pred             cceeeeeecCCcEEEEecCCCCccccccCC
Q 006424          504 VRSCEHFFSEGVSVAVQWPGIGTEQKSLCS  533 (645)
Q Consensus       504 ~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~  533 (645)
                           .-.+.+.+..++|.  ...+++.+.
T Consensus       229 -----~~~~sr~~Y~v~W~--~~~IaS~gg  251 (312)
T KOG0645|consen  229 -----SGMHSRALYDVPWD--NGVIASGGG  251 (312)
T ss_pred             -----chhcccceEeeeec--ccceEeccC
Confidence                 11124567778887  333444433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.98  E-value=2e-29  Score=251.32  Aligned_cols=277  Identities=24%  Similarity=0.441  Sum_probs=220.6

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      .+++++|.++|++++|+|++++|++++.||.+++|++.+                                         
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~-----------------------------------------   40 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLET-----------------------------------------   40 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeC-----------------------------------------
Confidence            356789999999999999999999999999999999986                                         


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                          ......+.+|...+..+.|++++ .+++++.||.|++||+.+++.+..+. |...+.++.|+| +++++++++.|+
T Consensus        41 ----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~  115 (289)
T cd00200          41 ----GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDK  115 (289)
T ss_pred             ----CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCC
Confidence                33456677899999999999987 89999999999999999877766664 777999999999 788888888899


Q ss_pred             cEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          351 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       351 ~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      .|++||+++++... +..|...+.+++|+|++.++++++.+|.+++||++....... +.      .+...+.++.|+|+
T Consensus       116 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~------~~~~~i~~~~~~~~  188 (289)
T cd00200         116 TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT-LT------GHTGEVNSVAFSPD  188 (289)
T ss_pred             eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee-Ee------cCccccceEEECCC
Confidence            99999999766554 556888999999999999999888899999999986554222 22      23468999999999


Q ss_pred             CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeee
Q 006424          430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  509 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  509 (645)
                      + ..+++++.|+.|++||............+...+.++.|+|++.++++++.||.|++||+.++......          
T Consensus       189 ~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~----------  257 (289)
T cd00200         189 G-EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL----------  257 (289)
T ss_pred             c-CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc----------
Confidence            7 78888888999999998754333333347779999999999999999888999999999764211110          


Q ss_pred             eecCCcEEEEecCCCCccccccCC
Q 006424          510 FFSEGVSVAVQWPGIGTEQKSLCS  533 (645)
Q Consensus       510 ~~~~g~~~~v~~s~~~~~l~~~~~  533 (645)
                      ..+.+.+..++|++++..+++.+.
T Consensus       258 ~~~~~~i~~~~~~~~~~~l~~~~~  281 (289)
T cd00200         258 SGHTNSVTSLAWSPDGKRLASGSA  281 (289)
T ss_pred             cccCCcEEEEEECCCCCEEEEecC
Confidence            012334556666666555554443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=6.9e-30  Score=269.55  Aligned_cols=282  Identities=31%  Similarity=0.490  Sum_probs=226.6

Q ss_pred             ccccccc-cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          193 SQEIQAH-KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       193 ~~~l~~H-~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      .+.+.+| ...|.++.|+++|++|++++.|+.+++|+......                                     
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------------------  193 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------------------  193 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------------------
Confidence            5556555 78999999999999999999999999999865210                                     


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEec-CCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV-GCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~-~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~  348 (645)
                            ...+.+.+|...|.+++|+|++ ++++++.|++|++||+ ..+..++++ +|...|++++|+| .++++++|+.
T Consensus       194 ------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~  266 (456)
T KOG0266|consen  194 ------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSD  266 (456)
T ss_pred             ------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecC
Confidence                  1455668999999999999998 9999999999999999 555888888 5999999999999 7899999999


Q ss_pred             CCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee-eeEEeeccccccCCCCeEEEEE
Q 006424          349 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       349 dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                      |++|++||++++++.. +..|.+.|++++|+++++++++++.||.|++||+.+.... ...  +... .... ++++++|
T Consensus       267 D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~--~~~~-~~~~-~~~~~~f  342 (456)
T KOG0266|consen  267 DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL--LSGA-ENSA-PVTSVQF  342 (456)
T ss_pred             CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec--ccCC-CCCC-ceeEEEE
Confidence            9999999999977765 7889999999999999999999999999999999988743 111  1111 1112 6999999


Q ss_pred             cCCCCcEEEEEECCCeEEEEECCcc--eeeEeecCCC-CCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCC
Q 006424          427 SRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKS-GSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS  503 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~-~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~  503 (645)
                      +|++ .++++++.|+.+++||+...  ...+.++... ..+.+...++.+.++++|+.|+.|++||+.++.......   
T Consensus       343 sp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~---  418 (456)
T KOG0266|consen  343 SPNG-KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE---  418 (456)
T ss_pred             CCCC-cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc---
Confidence            9998 89999999999999998844  3444443222 244555668899999999999999999999864322221   


Q ss_pred             cceeeeeecCCcEEEEecCCCCccccccC
Q 006424          504 VRSCEHFFSEGVSVAVQWPGIGTEQKSLC  532 (645)
Q Consensus       504 ~~~~~~~~~~g~~~~v~~s~~~~~l~~~~  532 (645)
                            .+....+..++|++...+++..+
T Consensus       419 ------~h~~~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  419 ------GHSKAAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             ------CCCCCceeccccCCCcCeeeecC
Confidence                  11135567778888887777554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=5.7e-30  Score=229.16  Aligned_cols=280  Identities=18%  Similarity=0.272  Sum_probs=238.9

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      +.+++|.+.|.+++|+.+|..|++|+.|+++.+|++...+                                        
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r----------------------------------------   53 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR----------------------------------------   53 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh----------------------------------------
Confidence            6688999999999999999999999999999999998631                                        


Q ss_pred             eccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                         ...-....+|.+.|-.++|+|.+  .+++++.|.+|++||++.+++.........-..+.|+| +++++++++.|..
T Consensus        54 ---~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp-~g~~~~~~~kdD~  129 (313)
T KOG1407|consen   54 ---FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSP-DGEYIAVGNKDDR  129 (313)
T ss_pred             ---hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcC-CCCEEEEecCccc
Confidence               11123456899999999999753  89999999999999999999999988777667789999 9999999999999


Q ss_pred             EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424          352 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       352 i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                      |...|.++.+..........++.++|+.++.+++.....|.|.|.....-+. ..      ....|.....||.|+|+| 
T Consensus       130 it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp-v~------si~AH~snCicI~f~p~G-  201 (313)
T KOG1407|consen  130 ITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP-VQ------SIKAHPSNCICIEFDPDG-  201 (313)
T ss_pred             EEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccc-cc------ccccCCcceEEEEECCCC-
Confidence            9999999999988888888899999998888888888889999988764432 22      233456789999999998 


Q ss_pred             cEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee
Q 006424          432 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF  511 (645)
Q Consensus       432 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  511 (645)
                      +++|+|+.|..+.+||+.+.+..-....+.-+|..+.||.||++||+||+|..|-|=++++|...           -...
T Consensus       202 ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~-----------~eI~  270 (313)
T KOG1407|consen  202 RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV-----------WEIP  270 (313)
T ss_pred             ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE-----------EEee
Confidence            89999999999999999876665555557889999999999999999999999999999988432           2344


Q ss_pred             cCCcEEEEecCCCCccccccCCCCc
Q 006424          512 SEGVSVAVQWPGIGTEQKSLCSSSL  536 (645)
Q Consensus       512 ~~g~~~~v~~s~~~~~l~~~~~~~~  536 (645)
                      .+++...|+|+|....|+-.++|.-
T Consensus       271 ~~~~t~tVAWHPk~~LLAyA~ddk~  295 (313)
T KOG1407|consen  271 CEGPTFTVAWHPKRPLLAYACDDKD  295 (313)
T ss_pred             ccCCceeEEecCCCceeeEEecCCC
Confidence            5788899999999999997777643

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.4e-31  Score=245.26  Aligned_cols=246  Identities=23%  Similarity=0.405  Sum_probs=219.3

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ..+.|+||+++|..+.|+..|++||+++.|=.+++||..+.                                       
T Consensus       142 ~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---------------------------------------  182 (406)
T KOG0295|consen  142 LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---------------------------------------  182 (406)
T ss_pred             hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH---------------------------------------
Confidence            35679999999999999999999999999999999998761                                       


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                           .+.++.+.+|+..|.+++|-|.| +++|++.|.+|+.|++.++.++.++. |...|.-++.+. ||.++++++.|
T Consensus       183 -----~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~d  256 (406)
T KOG0295|consen  183 -----FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSND  256 (406)
T ss_pred             -----HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCC
Confidence                 34567888999999999999987 99999999999999999999999995 889999999998 99999999999


Q ss_pred             CcEEEEeCCCCcEEE-eeccCCCeEEEEEccC---------------CCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424          350 GKVRIWGVCEKRVVD-WADVRDVISAICYIPD---------------GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  413 (645)
Q Consensus       350 g~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~---------------g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  413 (645)
                      .+|++|-+.++.+.. +..|..+|.+++|-|.               +.++.+++.|++|++||+.++.....   +.+ 
T Consensus       257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t---L~g-  332 (406)
T KOG0295|consen  257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT---LVG-  332 (406)
T ss_pred             ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE---Eec-
Confidence            999999999987654 6788899999998762               25899999999999999999876544   222 


Q ss_pred             cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       414 ~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                         |...|..++|+|.| ++|+++..|+++++||++..........|..-+++++|+.+..+++||+-|.++++|..
T Consensus       333 ---hdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  333 ---HDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ---ccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence               35899999999998 89999999999999999877666666678999999999999999999999999999974

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.6e-29  Score=226.22  Aligned_cols=248  Identities=25%  Similarity=0.420  Sum_probs=202.0

Q ss_pred             cccccccccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          190 LYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       190 ~~~~~~l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      +...+.+++|++.|+.++|+|- |..|||||.|+.|++|+...++.                                  
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----------------------------------   49 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS----------------------------------   49 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc----------------------------------
Confidence            3456778999999999999998 89999999999999999874211                                  


Q ss_pred             CCCceeccCCCceee-ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC--eEEEEe-cCCCcEEEEEEeeCCCCEE
Q 006424          269 PDEVFQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF-DHHNYVTCVQFNPIDDNYF  343 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~--~~~~~~-~~~~~v~~l~~~p~~~~~l  343 (645)
                              ......+ .+|+..|+.++|+|.| +|+++|.|.++.||.-..+  +++..+ +|.+.|.|++|++ +|++|
T Consensus        50 --------~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~L  120 (312)
T KOG0645|consen   50 --------WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYL  120 (312)
T ss_pred             --------EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEE
Confidence                    0111222 3799999999999998 9999999999999987644  566666 4999999999999 99999


Q ss_pred             EEEeCCCcEEEEeCCCCcE---E-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEec-CCceeeeEEeeccccccCC
Q 006424          344 ISGSIDGKVRIWGVCEKRV---V-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDLKLEKVDFHDRKKTSG  418 (645)
Q Consensus       344 ~s~s~dg~i~vwd~~~~~~---~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~  418 (645)
                      |+++.|..|-+|.+..+.-   . .+.+|...|..+.|+|...+|++++.|++|++|.-. ......     ......|.
T Consensus       121 ATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c-----~~tl~g~~  195 (312)
T KOG0645|consen  121 ATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWEC-----VQTLDGHE  195 (312)
T ss_pred             EEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeE-----EEEecCcc
Confidence            9999999999999875432   2 367899999999999999999999999999999887 333321     11222345


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      ..|.++.|++.| ..|++++.|++|+||-.....   . ..|...+..+.|.  ...|++++.|+.|++|.-..
T Consensus       196 ~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~---~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  196 NTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL---S-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             ceEEEEEecCCC-ceEEEecCCcceEeeeeccCc---c-hhcccceEeeeec--ccceEeccCCCEEEEEEecC
Confidence            689999999998 899999999999999854221   1 2367788999997  56899999999999997653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.1e-29  Score=257.41  Aligned_cols=291  Identities=18%  Similarity=0.298  Sum_probs=244.4

Q ss_pred             eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424          281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  360 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~  360 (645)
                      ..+.||...|.+++++.++.++..+..+.+++|+..+.++++++... .+.+..|.| .++++++|...|.+.+||+.+.
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~  444 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVP-GDRYIVLGTKNGELQVFDLASA  444 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecC-CCceEEEeccCCceEEEEeehh
Confidence            35679999999999999886666666789999999999999999766 788999999 8999999999999999999887


Q ss_pred             cEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce----eeeEEeecc-ccccCCCCeEEEEEcCCCCcEE
Q 006424          361 RVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL----KLEKVDFHD-RKKTSGNKITGIQFSRDESQRI  434 (645)
Q Consensus       361 ~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~-~~~~~~~~i~~i~~s~~g~~~l  434 (645)
                      .++. ...|.+.+.+++.+||++.+++|+.|.+|++||..-...    ....+.++. ..-.-...|.|+.+|||| .+|
T Consensus       445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~L  523 (888)
T KOG0306|consen  445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLL  523 (888)
T ss_pred             hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEE
Confidence            7665 567999999999999999999999999999999752111    001111111 111224789999999998 899


Q ss_pred             EEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCC
Q 006424          435 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG  514 (645)
Q Consensus       435 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g  514 (645)
                      +++--|++|+||-+.+..--+...+|.-+|.+|..|||++.++|||.|..|+||-++-|.+...          .|.|+.
T Consensus       524 aVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS----------~fAHdD  593 (888)
T KOG0306|consen  524 AVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS----------FFAHDD  593 (888)
T ss_pred             EEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh----------hhcccC
Confidence            9999999999999888877777788999999999999999999999999999999887743221          245678


Q ss_pred             cEEEEecCCCCccccccCCCCccccCccc--cccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCcc
Q 006424          515 VSVAVQWPGIGTEQKSLCSSSLRDCSQKW--DNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI  588 (645)
Q Consensus       515 ~~~~v~~s~~~~~l~~~~~~~~~~~~~~w--~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~  588 (645)
                      .+..|.|.|....+++++.|+.   ++-|  +.++..+...+|...+.+++.+|+|.+++|++. |..|++|+...
T Consensus       594 Svm~V~F~P~~~~FFt~gKD~k---vKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh-D~sIRlwE~td  665 (888)
T KOG0306|consen  594 SVMSVQFLPKTHLFFTCGKDGK---VKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH-DKSIRLWERTD  665 (888)
T ss_pred             ceeEEEEcccceeEEEecCcce---EEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC-CceeEeeeccC
Confidence            8899999999999998888754   6678  446777788999999999999999999999999 99999998654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=2e-31  Score=257.85  Aligned_cols=293  Identities=23%  Similarity=0.328  Sum_probs=234.8

Q ss_pred             cCCCceeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCC-CeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          276 EESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGC-NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~-~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                      ..+.+..+.||+..|+++.|.| .+ +|++++.|+.|+||++.. +.++++| +|..+|..++|++ ++..|++++.|+.
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRF  281 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeeccee
Confidence            3567889999999999999999 45 889999999999999965 8899998 4999999999999 9999999999999


Q ss_pred             EEEEeCCCCcEEEeeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          352 VRIWGVCEKRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       352 i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      |++||+++|++.........++++.|+|++ +.+++|+.|+.|+.||+++++...+       ...|-+.|..+.|-++|
T Consensus       282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe-------Yd~hLg~i~~i~F~~~g  354 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE-------YDRHLGAILDITFVDEG  354 (503)
T ss_pred             eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH-------HHhhhhheeeeEEccCC
Confidence            999999999999999999999999999998 8999999999999999999885432       22234789999999998


Q ss_pred             CcEEEEEECCCeEEEEECCccee-eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeee
Q 006424          431 SQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  509 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  509 (645)
                       ..+++++.|+.++||+.+.... .+....+.....++..+|++++++.-+.|..|.++.+........+..        
T Consensus       355 -~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~--------  425 (503)
T KOG0282|consen  355 -RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKR--------  425 (503)
T ss_pred             -ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhh--------
Confidence             8999999999999999774332 222223444566888999999999999999999999765421111100        


Q ss_pred             eecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccC
Q 006424          510 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  589 (645)
Q Consensus       510 ~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~  589 (645)
                      |  .|..                                      ..++...+.|||||.+|+|++. +|++.+||..+-
T Consensus       426 f--eGh~--------------------------------------vaGys~~v~fSpDG~~l~SGds-dG~v~~wdwkt~  464 (503)
T KOG0282|consen  426 F--EGHS--------------------------------------VAGYSCQVDFSPDGRTLCSGDS-DGKVNFWDWKTT  464 (503)
T ss_pred             h--ccee--------------------------------------ccCceeeEEEcCCCCeEEeecC-CccEEEeechhh
Confidence            0  0100                                      1234566789999999999998 999999998876


Q ss_pred             CCCCcCChhhhHhhhh--hccCCCCCccCCCCcceEEEEecCCCeEeEEE
Q 006424          590 SDGYCQDPQQQRLQQQ--CLNNVDDVRAISATWGLVIVTAGCDGMIKTFH  637 (645)
Q Consensus       590 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~  637 (645)
                                 ++...  .+...+..+.+.|-....++|+|+||.|++|+
T Consensus       465 -----------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  465 -----------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             -----------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence                       22222  23334444566665677899999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4.1e-29  Score=263.68  Aligned_cols=250  Identities=25%  Similarity=0.417  Sum_probs=211.6

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ..+++.+|...|.+++|+|+|+++++|+.|++|+|||+..                                        
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~----------------------------------------  234 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD----------------------------------------  234 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC----------------------------------------
Confidence            5566789999999999999999999999999999999944                                        


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                          ....++++.+|...|++++|+|++ .+++|+.|++|++||+++++++..+. |.+.|++++|++ ++++|++++.|
T Consensus       235 ----~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d  309 (456)
T KOG0266|consen  235 ----DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYD  309 (456)
T ss_pred             ----CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCC
Confidence                246678999999999999999998 99999999999999999999999996 899999999999 99999999999


Q ss_pred             CcEEEEeCCCCcE--E-EeeccCC--CeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424          350 GKVRIWGVCEKRV--V-DWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       350 g~i~vwd~~~~~~--~-~~~~~~~--~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                      +.|++||+.++..  . .+..+..  .+++++|+|++.++++++.|+.+++||+..........   .+... ...+.+.
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~---~~~~~-~~~~~~~  385 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT---GHSNL-VRCIFSP  385 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec---ccCCc-ceeEecc
Confidence            9999999999983  2 3444444  59999999999999999999999999999776644322   21111 0234455


Q ss_pred             EEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCC-CCCeEEEEEecCCCEEEEEe--CCccEEEEeCC
Q 006424          425 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK-SGSQMSASFTTTGKHIISIG--DDCRVYVWNYD  491 (645)
Q Consensus       425 ~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-~~~i~~v~~sp~~~~l~t~s--~dg~I~iwd~~  491 (645)
                      ..++.+ .++++|+.|+.|++||............| ...+..+.++|..+++++++  .|+.+++|..+
T Consensus       386 ~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  386 TLSTGG-KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cccCCC-CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            557776 89999999999999998865444444446 88899999999999999998  78999999865

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-28  Score=245.21  Aligned_cols=248  Identities=15%  Similarity=0.325  Sum_probs=216.3

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ..+++..|+..|.++.|+|...+++++-.+|.|.|||.++                                        
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyet----------------------------------------   44 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYET----------------------------------------   44 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEeccc----------------------------------------
Confidence            4456777999999999999999999999999999999987                                        


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                           ...++.+.-..-+|.+..|-.. +.+++|+.|..|+||+..+++.+..|. |.+.|+|++.+| ...+++++|.|
T Consensus        45 -----qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDD  118 (794)
T KOG0276|consen   45 -----QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDD  118 (794)
T ss_pred             -----ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCc
Confidence                 4456777777889999999865 599999999999999999999999996 999999999999 88899999999


Q ss_pred             CcEEEEeCCCCc--EEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424          350 GKVRIWGVCEKR--VVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       350 g~i~vwd~~~~~--~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                      -+|++||.+.+=  ...+.+|...|.+++|+| |.+.+++++-|++|++|.+........   +.+    |...|+|+.|
T Consensus       119 m~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT---l~g----HekGVN~Vdy  191 (794)
T KOG0276|consen  119 MTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT---LEG----HEKGVNCVDY  191 (794)
T ss_pred             cEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee---eec----cccCcceEEe
Confidence            999999998753  445889999999999999 667999999999999999987654322   333    4578999999


Q ss_pred             cCCC-CcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          427 SRDE-SQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       427 s~~g-~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      -+.| ..+|++|+.|.+|+|||..  ++++++.+  |...|..+.|+|.-..++|||+||+++||+-.+-.
T Consensus       192 y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG--Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~  260 (794)
T KOG0276|consen  192 YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG--HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK  260 (794)
T ss_pred             ccCCCcceEEecCCCceEEEeecchHHHHHHhhc--ccccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence            8864 3589999999999999977  45666666  78899999999999999999999999999987654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=3e-30  Score=239.26  Aligned_cols=244  Identities=24%  Similarity=0.451  Sum_probs=205.2

Q ss_pred             cccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424          186 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  265 (645)
Q Consensus       186 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (645)
                      ..+..+..+.|.||+|.|.|+.|  +.+.+++||.|.+|+|||+++                                  
T Consensus       223 D~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~t----------------------------------  266 (499)
T KOG0281|consen  223 DKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNT----------------------------------  266 (499)
T ss_pred             ccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccC----------------------------------
Confidence            34556688889999999999999  566999999999999999998                                  


Q ss_pred             eecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEE----ecCCCcEEEEEEeeCCCC
Q 006424          266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV----FDHHNYVTCVQFNPIDDN  341 (645)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~----~~~~~~v~~l~~~p~~~~  341 (645)
                                 ++++.++.+|...|..+.|+ +|+++++|.|.++.+||+.+...+..    .+|...|+.+.|   +.+
T Consensus       267 -----------ge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---d~k  331 (499)
T KOG0281|consen  267 -----------GEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDK  331 (499)
T ss_pred             -----------CchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc---ccc
Confidence                       67788999999999999997 48999999999999999987653322    258999999999   567


Q ss_pred             EEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          342 YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      ++++++.|.+|++|++.+.+.+. +.+|+..|-|+.+  .|+++++|+.|.+|++||+..+.....   +.    +|..-
T Consensus       332 yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRv---Le----GHEeL  402 (499)
T KOG0281|consen  332 YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV---LE----GHEEL  402 (499)
T ss_pred             eEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHH---Hh----chHHh
Confidence            99999999999999999999876 6789999988876  589999999999999999998875322   22    34578


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECCccee---------eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIH---------KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~---------~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      |.|+.|..   ..+++|+.||+|++||+.....         ......|.+.|..+.|  |...+++++.|.+|.|||+.
T Consensus       403 vRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  403 VRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             hhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcC
Confidence            99999975   4799999999999999763221         2223458889999999  56789999999999999998


Q ss_pred             CCC
Q 006424          492 ELC  494 (645)
Q Consensus       492 ~~~  494 (645)
                      ++.
T Consensus       478 ~~~  480 (499)
T KOG0281|consen  478 NGP  480 (499)
T ss_pred             CCC
Confidence            773

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=232.86  Aligned_cols=286  Identities=21%  Similarity=0.381  Sum_probs=231.1

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      +....+-|..|||||+||++|+.||-|-+||..++....                                     ++..
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK-------------------------------------DLkY  253 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK-------------------------------------DLKY  253 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhh-------------------------------------hhhh
Confidence            456678999999999999999999999999998754311                                     0011


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      +....+--|...|.|++|+.|. .+++|+.||.|++|.+++|+|++.|.  |...|+|+.|+. |+..+++++.|.++++
T Consensus       254 QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRi  332 (508)
T KOG0275|consen  254 QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRI  332 (508)
T ss_pred             hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEE
Confidence            2223445588999999999886 89999999999999999999999996  999999999999 9999999999999999


Q ss_pred             EeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424          355 WGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  433 (645)
Q Consensus       355 wd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~  433 (645)
                      .-+.+++++. +.+|.+.|+...|+++|.++++++.||+|++|+.++..+....-...     ...+|.++..-|.++..
T Consensus       333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~-----~d~~vnsv~~~PKnpeh  407 (508)
T KOG0275|consen  333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG-----TDYPVNSVILLPKNPEH  407 (508)
T ss_pred             eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC-----CcccceeEEEcCCCCce
Confidence            9999988765 88999999999999999999999999999999999877643321111     24789999999988899


Q ss_pred             EEEEECCCeEEEEECC-cceeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee
Q 006424          434 IMITSEDSKLRILDGV-DVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF  511 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~-~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  511 (645)
                      ++++...++|+|.++. +..+.+.. ....+...+.+.||.|.++.+.++|+.++.|.+.++......          .-
T Consensus       408 ~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl----------~V  477 (508)
T KOG0275|consen  408 FIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL----------PV  477 (508)
T ss_pred             EEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee----------ec
Confidence            9999999999999976 34444443 334556778889999999999999999999999988533221          11


Q ss_pred             cCCcEEEEecCCCCccccccCCCCc
Q 006424          512 SEGVSVAVQWPGIGTEQKSLCSSSL  536 (645)
Q Consensus       512 ~~g~~~~v~~s~~~~~l~~~~~~~~  536 (645)
                      ++..+..++.+|....|++.+.|++
T Consensus       478 hEkdvIGl~HHPHqNllAsYsEDgl  502 (508)
T KOG0275|consen  478 HEKDVIGLTHHPHQNLLASYSEDGL  502 (508)
T ss_pred             ccccccccccCcccchhhhhcccch
Confidence            2333556777777777776666644

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.5e-29  Score=256.72  Aligned_cols=283  Identities=15%  Similarity=0.243  Sum_probs=230.8

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      |...+..|..++|+|...+++++-..|.|++||.+-                                            
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM--------------------------------------------   40 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--------------------------------------------   40 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhh--------------------------------------------
Confidence            455677899999999999999999999999999875                                            


Q ss_pred             cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVR  353 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~  353 (645)
                       +..+..|..|.++|..++|+|++ .++||+.|-.|+||+..+.+++.++ +|-+.|+.+.|++ .--.++++|.|.+|+
T Consensus        41 -~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIr  118 (1202)
T KOG0292|consen   41 -GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIR  118 (1202)
T ss_pred             -hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEE
Confidence             56678899999999999999987 9999999999999999999998877 6999999999999 888999999999999


Q ss_pred             EEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE----------------------ee
Q 006424          354 IWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV----------------------DF  410 (645)
Q Consensus       354 vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~----------------------~~  410 (645)
                      ||+..+++++. +.+|...|.|..|+|....+++++-|.+|++||+.+-+......                      -.
T Consensus       119 IWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV  198 (1202)
T KOG0292|consen  119 IWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV  198 (1202)
T ss_pred             EEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence            99999988776 78999999999999999999999999999999997433211100                      00


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEE
Q 006424          411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW  488 (645)
Q Consensus       411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iw  488 (645)
                      .....+|...|+-++|+|.- .++++|+.|..|++|......  ..-...+|...|.++-|+|..+++++.|+|++|+||
T Consensus       199 K~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw  277 (1202)
T KOG0292|consen  199 KHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW  277 (1202)
T ss_pred             eeeecccccccceEEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence            11123467789999999986 699999999999999976422  122234589999999999999999999999999999


Q ss_pred             eCCCCCcCCCcccCCcceeeeee-cCCcEEEEecCCCCccccccCCCCc
Q 006424          489 NYDELCFPSSKQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSSSL  536 (645)
Q Consensus       489 d~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~v~~s~~~~~l~~~~~~~~  536 (645)
                      |+.......           .|. .++....++-+|....++...+.++
T Consensus       278 Dm~kRt~v~-----------tfrrendRFW~laahP~lNLfAAgHDsGm  315 (1202)
T KOG0292|consen  278 DMTKRTSVQ-----------TFRRENDRFWILAAHPELNLFAAGHDSGM  315 (1202)
T ss_pred             eccccccee-----------eeeccCCeEEEEEecCCcceeeeecCCce
Confidence            998763222           221 2445566666776666665554443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=5e-28  Score=241.18  Aligned_cols=242  Identities=26%  Similarity=0.490  Sum_probs=204.0

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      ..+.+|...+.++.|+|++++|++++.||.|++|++.+                                          
T Consensus        45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~------------------------------------------   82 (289)
T cd00200          45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET------------------------------------------   82 (289)
T ss_pred             EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc------------------------------------------
Confidence            44668999999999999999999999999999999986                                          


Q ss_pred             eccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                         .+....+.+|...|.++.|++++ .+++++.|+.|.+||+.+++....+. |...+.+++|+| ++.++++++.|+.
T Consensus        83 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~  158 (289)
T cd00200          83 ---GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGT  158 (289)
T ss_pred             ---ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCc
Confidence               34456677899999999999986 66677779999999999888887776 888999999999 7888888888999


Q ss_pred             EEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          352 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       352 i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      |++||+++++... +..+...+.+++|+|+++.+++++.+|.+++||++....... +  .    .+...+.++.|+|++
T Consensus       159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~--~----~~~~~i~~~~~~~~~  231 (289)
T cd00200         159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT-L--R----GHENGVNSVAFSPDG  231 (289)
T ss_pred             EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc-h--h----hcCCceEEEEEcCCC
Confidence            9999998766544 556777999999999999999999999999999987543221 1  1    234689999999995


Q ss_pred             CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          431 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                       .++++++.|+.|++||............|...+.+++|+|++++|++++.||.|++|+
T Consensus       232 -~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         232 -YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             -cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence             7888888899999999875444444445778999999999999999999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=4.7e-29  Score=232.39  Aligned_cols=293  Identities=18%  Similarity=0.280  Sum_probs=243.8

Q ss_pred             ccccchhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCC
Q 006424           90 SEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEK  169 (645)
Q Consensus        90 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (645)
                      .-.-.|..-+.+|..+|..+++.|+..- +++-+.            |++++.|                          
T Consensus       138 HapwKl~rVi~gHlgWVr~vavdP~n~w-f~tgs~------------DrtikIw--------------------------  178 (460)
T KOG0285|consen  138 HAPWKLYRVISGHLGWVRSVAVDPGNEW-FATGSA------------DRTIKIW--------------------------  178 (460)
T ss_pred             cCcceehhhhhhccceEEEEeeCCCcee-EEecCC------------CceeEEE--------------------------
Confidence            4445677789999999999999999554 777776            6655555                          


Q ss_pred             CccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCC
Q 006424          170 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA  249 (645)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  249 (645)
                                      ....-.+..+|.||...|..+++|+-..||++++.|+.|+.||++.                  
T Consensus       179 ----------------Dlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~------------------  224 (460)
T KOG0285|consen  179 ----------------DLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY------------------  224 (460)
T ss_pred             ----------------EcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh------------------
Confidence                            2222336677899999999999999999999999999999999986                  


Q ss_pred             CCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEec-CC
Q 006424          250 KEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HH  327 (645)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~  327 (645)
                                                 .+.++.+.||-..|.|++.+|. ..|++|+.|.++++||+++...+..+. |.
T Consensus       225 ---------------------------nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~  277 (460)
T KOG0285|consen  225 ---------------------------NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT  277 (460)
T ss_pred             ---------------------------hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC
Confidence                                       6778999999999999999997 499999999999999999999998885 99


Q ss_pred             CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424          328 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  406 (645)
Q Consensus       328 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~  406 (645)
                      .+|..+.+.| .+..+++|+.|++|++||++.++.. ....|+..+.+++.+|....+|+++.| .|+-|++..+.....
T Consensus       278 ~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n  355 (460)
T KOG0285|consen  278 NPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN  355 (460)
T ss_pred             CcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhc
Confidence            9999999999 5667999999999999999987754 578899999999999999999998877 678898876664322


Q ss_pred             EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--eeE---ee---cCCCCCeEEEEEecCCCEEEE
Q 006424          407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKF---KG---LPKSGSQMSASFTTTGKHIIS  478 (645)
Q Consensus       407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~~~---~~---~~~~~~i~~v~~sp~~~~l~t  478 (645)
                             ...|...|.+++.+.||  ++++|+..|.+.+||.+...  +..   ..   ......|.+.+|+..|..|+|
T Consensus       356 -------lsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit  426 (460)
T KOG0285|consen  356 -------LSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT  426 (460)
T ss_pred             -------cccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe
Confidence                   33345789999999996  89999999999999976321  111   11   224567899999999999999


Q ss_pred             EeCCccEEEEeCCCC
Q 006424          479 IGDDCRVYVWNYDEL  493 (645)
Q Consensus       479 ~s~dg~I~iwd~~~~  493 (645)
                      |..|.+|++|.-+..
T Consensus       427 ~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  427 GEADKTIKMYKEDEH  441 (460)
T ss_pred             ccCCcceEEEecccc
Confidence            999999999986654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.2e-29  Score=221.66  Aligned_cols=242  Identities=19%  Similarity=0.335  Sum_probs=207.0

Q ss_pred             ccCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          199 HKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       199 H~~~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      -.+.+..++|+++. +.+++++.||++++||+..                                            ..
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------------------------------~s   94 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------------------------------PS   94 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------------------------------CC
Confidence            46789999999964 5889999999999999654                                            25


Q ss_pred             CCceeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      .+++.++.|..+|.++.|++- + .++++|.|++|++|+...++.+.+|. |...|...+|+|..++.++++|.|+++++
T Consensus        95 ~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l  174 (311)
T KOG0277|consen   95 KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRL  174 (311)
T ss_pred             cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence            788999999999999999975 3 68888999999999999999999884 99999999999999999999999999999


Q ss_pred             EeCCC-CcEEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424          355 WGVCE-KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       355 wd~~~-~~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                      ||++. ++...+..|...+.++.|+. +.+.+++|+.|+.|+.||++..+.+...+.      .|+-.|..+.|||....
T Consensus       175 wdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~------gh~~AVRkvk~Sph~~~  248 (311)
T KOG0277|consen  175 WDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN------GHGLAVRKVKFSPHHAS  248 (311)
T ss_pred             EEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeec------CCceEEEEEecCcchhh
Confidence            99986 66666888999999999998 667899999999999999998887655443      34578999999998778


Q ss_pred             EEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeC
Q 006424          433 RIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       433 ~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~  490 (645)
                      +|++++.|-+++|||... ....-....|..-+..+.||+ +..++|+++.|+.++||+-
T Consensus       249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            999999999999999662 111222234888899999988 5679999999999999984

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=7e-28  Score=216.43  Aligned_cols=287  Identities=19%  Similarity=0.235  Sum_probs=226.2

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      |+||..+++.+.|+.+|.+|.+++.|.+..+|-..+                                            
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n--------------------------------------------   41 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN--------------------------------------------   41 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecC--------------------------------------------
Confidence            789999999999999999999999999999997765                                            


Q ss_pred             cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-----C
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-----D  349 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~-----d  349 (645)
                       +..+.++.||.+.|+|+..+.+. .+++|+.|.++++||+++|+++..+..+.+|..+.|++ ++++++.+..     .
T Consensus        42 -GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~  119 (327)
T KOG0643|consen   42 -GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF-GGNLILASTDKQMGYT  119 (327)
T ss_pred             -CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc-CCcEEEEEehhhcCcc
Confidence             56688999999999999998765 89999999999999999999999999999999999999 8888777654     3


Q ss_pred             CcEEEEeCCC-------Cc-EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424          350 GKVRIWGVCE-------KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  421 (645)
Q Consensus       350 g~i~vwd~~~-------~~-~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  421 (645)
                      +.|.++|++.       .+ ...+..+.+.++.+-|.|-+++|++|..||.|..||++++.........      |...|
T Consensus       120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~------h~~~I  193 (327)
T KOG0643|consen  120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE------HSSKI  193 (327)
T ss_pred             eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh------hcccc
Confidence            5799999983       33 5556777899999999999999999999999999999988765443333      34789


Q ss_pred             EEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEE--EeCCCCCcCCCc
Q 006424          422 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV--WNYDELCFPSSK  499 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~i--wd~~~~~~~~~~  499 (645)
                      +.++++++. .++++++.|.+-++||..+.... +......+|++.+++|...+++.|+.....-|  =+.+.++....-
T Consensus       194 nd~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~-Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF  271 (327)
T KOG0643|consen  194 NDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVL-KTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF  271 (327)
T ss_pred             ccccccCCc-ceEEecccCccceeeeccceeeE-EEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhH
Confidence            999999997 89999999999999998754332 22235779999999998888888764322222  122222211110


Q ss_pred             ccCCcceeee----eecCCcEEEEecCCCCccccccCCCCccc
Q 006424          500 QKNSVRSCEH----FFSEGVSVAVQWPGIGTEQKSLCSSSLRD  538 (645)
Q Consensus       500 ~~~~~~~~~~----~~~~g~~~~v~~s~~~~~l~~~~~~~~~~  538 (645)
                        -....+..    -.|-|++.+++++|+|..-++.+.|+..+
T Consensus       272 --yh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR  312 (327)
T KOG0643|consen  272 --YHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR  312 (327)
T ss_pred             --HHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence              00001111    12567899999999999877776665433

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=3.4e-29  Score=232.25  Aligned_cols=244  Identities=23%  Similarity=0.381  Sum_probs=200.1

Q ss_pred             cccccccccccc---cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCC
Q 006424          186 EFTALYTSQEIQ---AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  262 (645)
Q Consensus       186 ~~~~~~~~~~l~---~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (645)
                      |.-+-+..+++.   .....|.|+.+  |...+++|..|.+|+|||..+                               
T Consensus       180 Wr~Gr~~~~rinc~Se~skgVYClQY--DD~kiVSGlrDnTikiWD~n~-------------------------------  226 (499)
T KOG0281|consen  180 WRCGRHLLQRINCRSENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNS-------------------------------  226 (499)
T ss_pred             hhccceeeeeecCCcccCCceEEEEe--cchhhhcccccCceEEecccc-------------------------------
Confidence            334444444443   24578999999  455899999999999999986                               


Q ss_pred             cceeecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCC
Q 006424          263 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN  341 (645)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~  341 (645)
                                    ......+.||++.|.|+.|.. ..+++||.|.+|++||+++++++.++ .|...|..+.|+   ++
T Consensus       227 --------------~~c~~~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~---ng  288 (499)
T KOG0281|consen  227 --------------LECLKILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NG  288 (499)
T ss_pred             --------------HHHHHhhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe---CC
Confidence                          455778899999999999963 48999999999999999999999887 588899999995   57


Q ss_pred             EEEEEeCCCcEEEEeCCCCcEEE----eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424          342 YFISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  417 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  417 (645)
                      ++++++.|.++.+||+....-..    +.+|...|+.+.|+  .+++++++.|.+|++|++.+......   ++    +|
T Consensus       289 ~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRt---l~----gH  359 (499)
T KOG0281|consen  289 YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRT---LN----GH  359 (499)
T ss_pred             EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehh---hh----cc
Confidence            99999999999999998765332    57899999999985  56999999999999999998765321   22    23


Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424          418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  495 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~  495 (645)
                      ...|.|+++.  | +++++|+.|.+|++||+..  +...+.+  |..-|.++.|  |.+.+++|+.||+|+|||+..+.-
T Consensus       360 kRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~cLRvLeG--HEeLvRciRF--d~krIVSGaYDGkikvWdl~aald  432 (499)
T KOG0281|consen  360 KRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACLRVLEG--HEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALD  432 (499)
T ss_pred             cccceehhcc--C-eEEEecCCCceEEEEeccccHHHHHHhc--hHHhhhheee--cCceeeeccccceEEEEecccccC
Confidence            4678888774  3 7999999999999999874  4445555  8889999999  678999999999999999998754


Q ss_pred             C
Q 006424          496 P  496 (645)
Q Consensus       496 ~  496 (645)
                      +
T Consensus       433 p  433 (499)
T KOG0281|consen  433 P  433 (499)
T ss_pred             C
Confidence            3

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.4e-26  Score=213.96  Aligned_cols=284  Identities=24%  Similarity=0.376  Sum_probs=221.6

Q ss_pred             cccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       190 ~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      +...+.|..-.+.|+++.|+++|.+|++++.|-++++||..+                                      
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~--------------------------------------   45 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS--------------------------------------   45 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC--------------------------------------
Confidence            345566777788999999999999999999999999999987                                      


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCC-CeEEEEeC--CCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEE
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSM--DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~l~s~s~--dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s  345 (645)
                             ++.++++..++..|..++|... ..++.++.  |.+|+..++.+++.++.|. |...|+.++.+| -++.+++
T Consensus        46 -------g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS  117 (311)
T KOG1446|consen   46 -------GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLS  117 (311)
T ss_pred             -------CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEe
Confidence                   5556777778888888888644 46666665  8899999999999999995 999999999999 7799999


Q ss_pred             EeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC-ceeeeEEeeccccccCCCCeEEE
Q 006424          346 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                      ++.|++|++||++..++.-+...... ..++|+|.|-++|++...+.|++||++.. .-+...+.+..   ......+.+
T Consensus       118 ~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---~~~~ew~~l  193 (311)
T KOG1446|consen  118 SSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---NDEAEWTDL  193 (311)
T ss_pred             cccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC---CCccceeee
Confidence            99999999999998777665444332 34689999999999998889999999876 33334443332   124678999


Q ss_pred             EEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCC-eEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCccc
Q 006424          425 QFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGS-QMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK  501 (645)
Q Consensus       425 ~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~-i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~  501 (645)
                      .|+|+| ++++.++..+.+++.|.-  .....+..+...+. -...+|+||++++++|++||+|.+|+++++........
T Consensus       194 ~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  194 EFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             EEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence            999998 789999999999999955  44555666544442 25778999999999999999999999988854333222


Q ss_pred             CCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424          502 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS  533 (645)
Q Consensus       502 ~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~  533 (645)
                      .         ..+.+..+.|+|....+++.++
T Consensus       273 ~---------~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  273 P---------NGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             C---------CCCCccccccCCceeeeeecCc
Confidence            1         1234455557777666665554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=6.7e-27  Score=265.45  Aligned_cols=296  Identities=16%  Similarity=0.212  Sum_probs=225.8

Q ss_pred             hhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchhHhh
Q 006424           99 LEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVK  178 (645)
Q Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (645)
                      +..|...|..++|.+++.. +++++.            |+.++.|-..          .      ....  .        
T Consensus       479 ~~~~~~~V~~i~fs~dg~~-latgg~------------D~~I~iwd~~----------~------~~~~--~--------  519 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEF-FATAGV------------NKKIKIFECE----------S------IIKD--G--------  519 (793)
T ss_pred             ccCCCCcEEEEEECCCCCE-EEEEeC------------CCEEEEEECC----------c------cccc--c--------
Confidence            4457888999999999876 777777            7777766100          0      0000  0        


Q ss_pred             hcccccccccccccccccccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEec
Q 006424          179 QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG  257 (645)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (645)
                          ..    .......+. +...|.+++|+|. +.+|++|+.||+|++||+.+                          
T Consensus       520 ----~~----~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~--------------------------  564 (793)
T PLN00181        520 ----RD----IHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR--------------------------  564 (793)
T ss_pred             ----cc----cccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC--------------------------
Confidence                00    000111222 3457999999874 78999999999999999986                          


Q ss_pred             ccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEE
Q 006424          258 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF  335 (645)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~  335 (645)
                                         .+.+..+.+|.+.|++++|+| ++ +|++|+.|++|++||++++..+..+.+...+.++.|
T Consensus       565 -------------------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~  625 (793)
T PLN00181        565 -------------------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQF  625 (793)
T ss_pred             -------------------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEE
Confidence                               344677889999999999996 55 899999999999999999999888877778999999


Q ss_pred             eeCCCCEEEEEeCCCcEEEEeCCCCc--EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424          336 NPIDDNYFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  413 (645)
Q Consensus       336 ~p~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  413 (645)
                      ++.++.+|++|+.||.|++||++...  ...+.+|...|.++.|. ++.++++++.|+.|++||++......... ....
T Consensus       626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~-~l~~  703 (793)
T PLN00181        626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINET-PLHS  703 (793)
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCc-ceEE
Confidence            76579999999999999999998764  34567899999999997 78899999999999999997532110000 0001


Q ss_pred             cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee--eEe-----------ecCCCCCeEEEEEecCCCEEEEEe
Q 006424          414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--KFK-----------GLPKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       414 ~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~--~~~-----------~~~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      ...|...+.++.|+|++ .+|++|+.|+.|++|+......  .+.           ...+...|.+++|+|++..|++|+
T Consensus       704 ~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~  782 (793)
T PLN00181        704 FMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN  782 (793)
T ss_pred             EcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence            12345778999999997 7999999999999999653221  111           122445699999999999999999


Q ss_pred             CCccEEEEeC
Q 006424          481 DDCRVYVWNY  490 (645)
Q Consensus       481 ~dg~I~iwd~  490 (645)
                      .||.|+||++
T Consensus       783 ~dG~I~i~~~  792 (793)
T PLN00181        783 STGNIKILEM  792 (793)
T ss_pred             CCCcEEEEec
Confidence            9999999996

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4e-27  Score=215.25  Aligned_cols=275  Identities=20%  Similarity=0.303  Sum_probs=216.3

Q ss_pred             cccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          198 AHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       198 ~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      .-.+.|.+++||| ...+++.||.||+||+|+++....                                          
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~------------------------------------------   62 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ------------------------------------------   62 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCc------------------------------------------
Confidence            3567899999999 455777999999999999986210                                          


Q ss_pred             CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCC--EEEEEeCCCcEE
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN--YFISGSIDGKVR  353 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~--~l~s~s~dg~i~  353 (645)
                      .. -+....|.++|.+++|+.+| .+++|+.|+.+++||+.+++....-.|..+|.++.|-+ ...  .|++||.|.+|+
T Consensus        63 ~~-~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlK  140 (347)
T KOG0647|consen   63 LV-PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLK  140 (347)
T ss_pred             cc-chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-CCCcceeEeccccccee
Confidence            01 13445799999999999998 89999999999999999998887778999999999987 555  799999999999


Q ss_pred             EEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424          354 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  433 (645)
Q Consensus       354 vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~  433 (645)
                      .||.+....+......+.++++..-  ...++++..+..|.+|++++.........-+     ..-.+.|++..++. ..
T Consensus       141 fWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~Sp-----Lk~Q~R~va~f~d~-~~  212 (347)
T KOG0647|consen  141 FWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESP-----LKWQTRCVACFQDK-DG  212 (347)
T ss_pred             ecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCc-----ccceeeEEEEEecC-Cc
Confidence            9999999999888889999888753  4578889999999999998776544432222     12568899988886 56


Q ss_pred             EEEEECCCeEEEEECCcc--e--eeEeecCC-------CCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCC-ccc
Q 006424          434 IMITSEDSKLRILDGVDV--I--HKFKGLPK-------SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-KQK  501 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~~~--~--~~~~~~~~-------~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~-~~~  501 (645)
                      .+.|+-+|.+.|..+...  .  ..|+.|..       -..|++++|+|.-..|+|+|.||+..+||-+....... ...
T Consensus       213 ~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~  292 (347)
T KOG0647|consen  213 FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH  292 (347)
T ss_pred             eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence            699999999999886643  2  33444332       12578899999999999999999999999876543322 344


Q ss_pred             CCcceeeeeecCCcEEEEecCCC
Q 006424          502 NSVRSCEHFFSEGVSVAVQWPGI  524 (645)
Q Consensus       502 ~~~~~~~~~~~~g~~~~v~~s~~  524 (645)
                      ....+|..|+.+|.+.+.+.+-|
T Consensus       293 ~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  293 PQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             CCccceeEecCCCCEEEEEeecc
Confidence            45667778888888877664433

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=2e-27  Score=222.49  Aligned_cols=243  Identities=21%  Similarity=0.337  Sum_probs=198.4

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      .-++.+|++.|+|+.||.||.+||||+.+|.|+||+..++.                                       
T Consensus        99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~---------------------------------------  139 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG---------------------------------------  139 (399)
T ss_pred             eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc---------------------------------------
Confidence            44578999999999999999999999999999999998742                                       


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                            ....+...-..+.-+.|+|.+ .|++|+.||.+.+|.+.++...+.+ +|+.++++=.|.| +|+.++++..||
T Consensus       140 ------~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dg  212 (399)
T KOG0296|consen  140 ------EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDG  212 (399)
T ss_pred             ------eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEecCc
Confidence                  233343445677888999987 8999999999999999986555555 6999999999999 999999999999


Q ss_pred             cEEEEeCCCCcEEEeec----------------------------------------------------cCCCeEEEEE-
Q 006424          351 KVRIWGVCEKRVVDWAD----------------------------------------------------VRDVISAICY-  377 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~~~----------------------------------------------------~~~~v~~l~~-  377 (645)
                      +|++|+..++.......                                                    +...+.++.+ 
T Consensus       213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~  292 (399)
T KOG0296|consen  213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI  292 (399)
T ss_pred             eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence            99999998876442211                                                    0111222333 


Q ss_pred             --ccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeE
Q 006424          378 --IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF  455 (645)
Q Consensus       378 --sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~  455 (645)
                        +..-.+.|+|+-||+|.|||+.....+.        ...|...|+.+.|-++  .+|++++.+|.|+.||.+.....+
T Consensus       293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~--------~c~he~~V~~l~w~~t--~~l~t~c~~g~v~~wDaRtG~l~~  362 (399)
T KOG0296|consen  293 PSSSKLPLAACGSVDGTIAIYDLAASTLRH--------ICEHEDGVTKLKWLNT--DYLLTACANGKVRQWDARTGQLKF  362 (399)
T ss_pred             ccccccchhhcccccceEEEEecccchhhe--------eccCCCceEEEEEcCc--chheeeccCceEEeeeccccceEE
Confidence              2334578899999999999998765432        2334578999999994  699999999999999999887777


Q ss_pred             eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          456 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       456 ~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      ....|...|.+++++|+.++++|+|.|++.+||++.
T Consensus       363 ~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  363 TYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            777799999999999999999999999999999864

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=7.4e-29  Score=220.42  Aligned_cols=287  Identities=21%  Similarity=0.331  Sum_probs=236.5

Q ss_pred             ccccccccCcEEEEEECC---CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          193 SQEIQAHKGCIWTLKFSP---DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fsp---dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      -.+..||+.+|..++|||   +|-+|++++.||.=.+-+=++                                      
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t--------------------------------------   48 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT--------------------------------------   48 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC--------------------------------------
Confidence            345789999999999996   788999999999876655444                                      


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~  348 (645)
                             +.-+.++.||.+.|+..+.+.+. +.++++.|-+-++||.-+|..+..|.|..-|.+++|+. +.++|++|+.
T Consensus        49 -------gdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~-ds~~lltgg~  120 (334)
T KOG0278|consen   49 -------GDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQ-DSNYLLTGGQ  120 (334)
T ss_pred             -------CCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecc-cchhhhccch
Confidence                   44578999999999999988775 77899999999999999999999999999999999999 9999999999


Q ss_pred             CCcEEEEeCCCC--cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424          349 DGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       349 dg~i~vwd~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                      +..+++||++..  ....+.+|.+.|..+.|....+.+++++.|++|++||.+++.... .+.+.       .+|+++.+
T Consensus       121 ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~-sL~~~-------s~VtSlEv  192 (334)
T KOG0278|consen  121 EKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQ-SLEFN-------SPVTSLEV  192 (334)
T ss_pred             HHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEE-EEecC-------CCCcceee
Confidence            999999999864  456788999999999999999999999999999999999887533 33332       67999999


Q ss_pred             cCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcce
Q 006424          427 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRS  506 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~  506 (645)
                      +++|  .+++....+.|.+||..... .++...-...|.+...+|+...+++|++|+.++.||+.++.....        
T Consensus       193 s~dG--~ilTia~gssV~Fwdaksf~-~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~--------  261 (334)
T KOG0278|consen  193 SQDG--RILTIAYGSSVKFWDAKSFG-LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS--------  261 (334)
T ss_pred             ccCC--CEEEEecCceeEEecccccc-ceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee--------
Confidence            9997  57777788899999976432 233333456789999999999999999999999999998832111        


Q ss_pred             eeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCC
Q 006424          507 CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV  586 (645)
Q Consensus       507 ~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~  586 (645)
                         +                                         ..+|.+.+.++.|||||..-++++. ||+|++|..
T Consensus       262 ---~-----------------------------------------nkgh~gpVhcVrFSPdGE~yAsGSE-DGTirlWQt  296 (334)
T KOG0278|consen  262 ---Y-----------------------------------------NKGHFGPVHCVRFSPDGELYASGSE-DGTIRLWQT  296 (334)
T ss_pred             ---c-----------------------------------------ccCCCCceEEEEECCCCceeeccCC-CceEEEEEe
Confidence               0                                         1234455666677777777778887 899999987


Q ss_pred             ccC
Q 006424          587 TID  589 (645)
Q Consensus       587 ~~~  589 (645)
                      ..+
T Consensus       297 ~~~  299 (334)
T KOG0278|consen  297 TPG  299 (334)
T ss_pred             cCC
Confidence            665

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.8e-27  Score=234.31  Aligned_cols=247  Identities=19%  Similarity=0.274  Sum_probs=210.7

Q ss_pred             cccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424          188 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  267 (645)
Q Consensus       188 ~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (645)
                      ....+++.++-..-+|.+..|-+-.+++++|++|..|+||+..+                                    
T Consensus        43 etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt------------------------------------   86 (794)
T KOG0276|consen   43 ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT------------------------------------   86 (794)
T ss_pred             ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc------------------------------------
Confidence            34446677777788999999999999999999999999999988                                    


Q ss_pred             cCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC-eEEEEe-cCCCcEEEEEEeeCCCCEEE
Q 006424          268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~-~~~~~~-~~~~~v~~l~~~p~~~~~l~  344 (645)
                               ...++.+..|.+.|.+++.+|.. +++|+|.|-+|++||.+.+ .+.++| +|...|.+++|+|.|.+.++
T Consensus        87 ---------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa  157 (794)
T KOG0276|consen   87 ---------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA  157 (794)
T ss_pred             ---------ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee
Confidence                     56688999999999999999986 9999999999999999865 456677 49999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCcE-EEeeccCCCeEEEEEccCC--CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424          345 SGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  421 (645)
Q Consensus       345 s~s~dg~i~vwd~~~~~~-~~~~~~~~~v~~l~~sp~g--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  421 (645)
                      +++.|++|++|.+.+..+ .++.+|...|+|++|-+.|  .+|++|+.|.++++||..+..+...       ..+|...|
T Consensus       158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T-------LeGHt~Nv  230 (794)
T KOG0276|consen  158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT-------LEGHTNNV  230 (794)
T ss_pred             eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH-------hhcccccc
Confidence            999999999999987554 5678999999999998855  5999999999999999998876432       23346789


Q ss_pred             EEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEE
Q 006424          422 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV  487 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~i  487 (645)
                      ..+.|+|.- .++++|++||+++||+..+....-...-....+.+++-.+.++.++.|.++|.|.+
T Consensus       231 s~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  231 SFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             eEEEecCCC-cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            999999996 79999999999999997644333333335678999999999999999988887765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=6.9e-28  Score=220.53  Aligned_cols=311  Identities=18%  Similarity=0.312  Sum_probs=237.0

Q ss_pred             ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      ..+....+..|++++.+.+|||||.++||||.|..|+|.|++..-.....             ..+.-            
T Consensus       101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~-------------~em~~------------  155 (430)
T KOG0640|consen  101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP-------------KEMIS------------  155 (430)
T ss_pred             cccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch-------------hhhcc------------
Confidence            34455567889999999999999999999999999999998742110000             00000            


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE---EEEecCCCcEEEEEEeeCCCCEEE
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~v~~l~~~p~~~~~l~  344 (645)
                        .--+.....++++..|..+|+++.|+|.. .|++|+.|++|+++|+.....   .+.+....+|.++.|+| .|.+++
T Consensus       156 --~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefll  232 (430)
T KOG0640|consen  156 --GDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLL  232 (430)
T ss_pred             --CCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEE
Confidence              00000124578889999999999999976 899999999999999975433   34455777999999999 999999


Q ss_pred             EEeCCCcEEEEeCCCCcEEE----eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          345 SGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       345 s~s~dg~i~vwd~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      +|..-.++++||+.+-++..    -.+|.+.|+++.+++.|+..++|+.||.|++||--.+++....-..++     +..
T Consensus       233 vgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-----gse  307 (430)
T KOG0640|consen  233 VGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-----GSE  307 (430)
T ss_pred             EecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC-----Cce
Confidence            99999999999999987764    356889999999999999999999999999999877666433333333     478


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCC---CeEEEEEecCCCEEEEEeC-CccEEEEeCCCCC
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSG---SQMSASFTTTGKHIISIGD-DCRVYVWNYDELC  494 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~---~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~  494 (645)
                      |.+..|..+| +++++++.|..+++|.+.  ..+..+.+.+..+   .-+...|.....|++.-.+ .+.+.-||-++..
T Consensus       308 vcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad  386 (430)
T KOG0640|consen  308 VCSAVFTKNG-KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD  386 (430)
T ss_pred             eeeEEEccCC-eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh
Confidence            9999999998 899999999999999976  4556666643222   2355678888888887654 5789999998874


Q ss_pred             cCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424          495 FPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  545 (645)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~  545 (645)
                      ...         .....++|.+..+.-+|.+..+.+++.|..   .++|..
T Consensus       387 r~~---------l~slgHn~a~R~i~HSP~~p~FmTcsdD~r---aRFWyr  425 (430)
T KOG0640|consen  387 RVA---------LLSLGHNGAVRWIVHSPVEPAFMTCSDDFR---ARFWYR  425 (430)
T ss_pred             hhh---------hcccCCCCCceEEEeCCCCCceeeecccce---eeeeee
Confidence            322         224456788888888999988887777643   445644

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=9.9e-28  Score=227.83  Aligned_cols=245  Identities=19%  Similarity=0.266  Sum_probs=211.8

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ...+|.|-.+.|+++.|.++++++++++.|+.+++|++..                                        
T Consensus       211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~----------------------------------------  250 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS----------------------------------------  250 (459)
T ss_pred             hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc----------------------------------------
Confidence            4567888999999999999999999999999999999986                                        


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                           .+...++.||++.|+++.|.... .+++|+.|.+|++||+....|.++.-..+.+..+..+   ...+++|..|+
T Consensus       251 -----~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~Dk  322 (459)
T KOG0288|consen  251 -----LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDK  322 (459)
T ss_pred             -----hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec---ceeeeeccccc
Confidence                 56678999999999999998765 5999999999999999999999888777777887774   46789999999


Q ss_pred             cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          351 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      +|++||.++..+.......+.|+++..+++|..+++.+.|.++.+.|+++...... +...+...  ....+.+.|||++
T Consensus       323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~-~sA~g~k~--asDwtrvvfSpd~  399 (459)
T KOG0288|consen  323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT-FSAEGFKC--ASDWTRVVFSPDG  399 (459)
T ss_pred             ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEE-eecccccc--ccccceeEECCCC
Confidence            99999999999988888888999999999999999999999999999998876433 22222222  2448899999998


Q ss_pred             CcEEEEEECCCeEEEEECCcceeeEeecCCCC--CeEEEEEecCCCEEEEEeCCccEEEE
Q 006424          431 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSG--SQMSASFTTTGKHIISIGDDCRVYVW  488 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~--~i~~v~~sp~~~~l~t~s~dg~I~iw  488 (645)
                       .|+++|+.||.|+||++........+.....  .|++++|+|.|..|++++.++.+.+|
T Consensus       400 -~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  400 -SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             -ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence             8999999999999999886555555433333  59999999999999999999999999

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=4.5e-27  Score=241.33  Aligned_cols=382  Identities=16%  Similarity=0.190  Sum_probs=281.3

Q ss_pred             ccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424          187 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  266 (645)
Q Consensus       187 ~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (645)
                      +.....+.+++++...|+++.=+|--..+|.|..+|+|.+++++.                                   
T Consensus       189 vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~-----------------------------------  233 (910)
T KOG1539|consen  189 VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF-----------------------------------  233 (910)
T ss_pred             eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc-----------------------------------
Confidence            344557788999999999999999888999999999999999987                                   


Q ss_pred             ecCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCE
Q 006424          267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNY  342 (645)
Q Consensus       267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~  342 (645)
                                .+.+.+++...+.|+.++|..||  .+++|+..|.+.+||++..+.+....  |.+.|..+.|.| ....
T Consensus       234 ----------dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epV  302 (910)
T KOG1539|consen  234 ----------DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPV  302 (910)
T ss_pred             ----------CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCce
Confidence                      45567777445999999999887  78899999999999999888777664  888999999999 8889


Q ss_pred             EEEEeCCCcEEEEeCCC--C--cEE-EeeccCCCeEEEEEc-cCCCEEEEEecCCeEEEEEec-----------------
Q 006424          343 FISGSIDGKVRIWGVCE--K--RVV-DWADVRDVISAICYI-PDGKGFIVGSITGTCHFYKAS-----------------  399 (645)
Q Consensus       343 l~s~s~dg~i~vwd~~~--~--~~~-~~~~~~~~v~~l~~s-p~g~~l~~g~~dg~i~iwd~~-----------------  399 (645)
                      +++++.|..+++|=..+  +  +.+ ...+|..+..++.|. .+|..+.+++.|++.+.+++.                 
T Consensus       303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~  382 (910)
T KOG1539|consen  303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA  382 (910)
T ss_pred             EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence            99999999999885543  2  233 356788888888887 577778888887766665542                 


Q ss_pred             ------------------------------------------------CCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424          400 ------------------------------------------------GNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       400 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                                                                      +...-...+. +.........+++++.++.| 
T Consensus       383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~-~~~~~~~~~~~~av~vs~CG-  460 (910)
T KOG1539|consen  383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD-PKRFKKDDINATAVCVSFCG-  460 (910)
T ss_pred             ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec-CccccccCcceEEEEEeccC-
Confidence                                                            1111000000 00011123578899999998 


Q ss_pred             cEEEEEECCCeEEEEECCcceeeEee---cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceee
Q 006424          432 QRIMITSEDSKLRILDGVDVIHKFKG---LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  508 (645)
Q Consensus       432 ~~l~~~s~dg~I~iwd~~~~~~~~~~---~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  508 (645)
                      ++.+.|+..|.|-+|++...+..-..   ..|.++|++++.+.-++.+++++.+|.+++||+................++
T Consensus       461 NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~i  540 (910)
T KOG1539|consen  461 NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGI  540 (910)
T ss_pred             ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCccee
Confidence            89999999999999999876655444   568999999999999999999999999999999887533333333333333


Q ss_pred             eeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCcc
Q 006424          509 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI  588 (645)
Q Consensus       509 ~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~  588 (645)
                      ..+....+++++-..-...++....-            .-.+.+.+|+..++.++|||||+++++|+. |++|++||+++
T Consensus       541 v~hr~s~l~a~~~ddf~I~vvD~~t~------------kvvR~f~gh~nritd~~FS~DgrWlisasm-D~tIr~wDlpt  607 (910)
T KOG1539|consen  541 VYHRVSDLLAIALDDFSIRVVDVVTR------------KVVREFWGHGNRITDMTFSPDGRWLISASM-DSTIRTWDLPT  607 (910)
T ss_pred             eeeehhhhhhhhcCceeEEEEEchhh------------hhhHHhhccccceeeeEeCCCCcEEEEeec-CCcEEEEeccC
Confidence            33333333333322222222211111            112246788999999999999999999999 99999999999


Q ss_pred             CCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCC-CeEeEEEecC
Q 006424          589 DSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCD-GMIKTFHNYG  640 (645)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~D-g~Iriw~~~g  640 (645)
                      +.          ++.-..-...+..+.++|+ |++|+|+..| .-|.+|-+.-
T Consensus       608 ~~----------lID~~~vd~~~~sls~SPn-gD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  608 GT----------LIDGLLVDSPCTSLSFSPN-GDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             cc----------eeeeEecCCcceeeEECCC-CCEEEEEEecCceEEEEEchh
Confidence            92          2222333455555677774 9999999999 6799998653

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.1e-27  Score=219.23  Aligned_cols=295  Identities=20%  Similarity=0.309  Sum_probs=217.4

Q ss_pred             ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC------------C------eEEEEe-cCCCcEEEEEEeeCC
Q 006424          280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------------N------QCLNVF-DHHNYVTCVQFNPID  339 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~------------~------~~~~~~-~~~~~v~~l~~~p~~  339 (645)
                      ...+..|++++.+.+|++|| ++++|+.|..|+|.|++.            +      -.++++ .|.+.|+++.|+| .
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r  183 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R  183 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence            35567899999999999999 889999999999999862            1      123333 6999999999999 8


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcE---EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424          340 DNYFISGSIDGKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  416 (645)
Q Consensus       340 ~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  416 (645)
                      ..+|++|+.|++|++||+.....   ........+|.++.|+|.|.++++|..-..+++||+.+.+.-....    ....
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan----Pd~q  259 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN----PDDQ  259 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC----cccc
Confidence            99999999999999999976443   3355567789999999999999999999999999999877643322    3345


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      |...|+++.+++.| ++.++++.||.|++||.-  .++.++........|++..|..+|+|+++.+.|..+++|.+.++.
T Consensus       260 ht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  260 HTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR  338 (430)
T ss_pred             cccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence            67899999999998 899999999999999954  455666655566789999999999999999999999999998873


Q ss_pred             cCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCC
Q 006424          495 FPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSA  574 (645)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~  574 (645)
                      ....                      +...|..      +                    .+..-+.-.|.....++...
T Consensus       339 ~l~~----------------------YtGAg~t------g--------------------rq~~rtqAvFNhtEdyVl~p  370 (430)
T KOG0640|consen  339 MLKE----------------------YTGAGTT------G--------------------RQKHRTQAVFNHTEDYVLFP  370 (430)
T ss_pred             eEEE----------------------EecCCcc------c--------------------chhhhhhhhhcCccceEEcc
Confidence            2111                      1111000      0                    00001111233333333333


Q ss_pred             CCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCC-CCcceEEEEecCCCeEeEEEe
Q 006424          575 TWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAIS-ATWGLVIVTAGCDGMIKTFHN  638 (645)
Q Consensus       575 s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~ivt~s~Dg~Iriw~~  638 (645)
                      +...+.+..||..++.          +......+|.+...-+. ++.+-.++|+|.|-++|+|-.
T Consensus       371 DEas~slcsWdaRtad----------r~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  371 DEASNSLCSWDARTAD----------RVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             ccccCceeeccccchh----------hhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            3334567889988873          33333445555444332 335778999999999999974

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1e-26  Score=213.59  Aligned_cols=270  Identities=19%  Similarity=0.248  Sum_probs=211.2

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      -.+.|.++.|+|.++.|+.++.||++++||+...                                             .
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---------------------------------------------~   46 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---------------------------------------------S   46 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch---------------------------------------------h
Confidence            3567999999999999999999999999999762                                             1


Q ss_pred             CceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424          279 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  358 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  358 (645)
                       +...-.|..++.+++|.++..+++|+.||.|+.+|+.++.......|...|.|+.+++ ..+.+++|+.|++|++||.+
T Consensus        47 -l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   47 -LKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             -hhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecc
Confidence             2222348999999999998899999999999999999998888888999999999999 78899999999999999999


Q ss_pred             CCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424          359 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  438 (645)
Q Consensus       359 ~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s  438 (645)
                      .............|.++..  .|+.|++|+.+..+.+||+++.......     ....-...+.|+++.|++ .=+++++
T Consensus       125 ~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~-----reS~lkyqtR~v~~~pn~-eGy~~sS  196 (323)
T KOG1036|consen  125 NKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR-----RESSLKYQTRCVALVPNG-EGYVVSS  196 (323)
T ss_pred             ccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhh-----ccccceeEEEEEEEecCC-CceEEEe
Confidence            8666666666668888876  4778999999999999999987765421     111123568999999975 6788999


Q ss_pred             CCCeEEEEECCcc------eeeEeecCC-------CCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcc
Q 006424          439 EDSKLRILDGVDV------IHKFKGLPK-------SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR  505 (645)
Q Consensus       439 ~dg~I~iwd~~~~------~~~~~~~~~-------~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~  505 (645)
                      -||+|.+=.....      .-.|+.|..       -.+|++++|+|-.+.+|||+.||.|.+||+.+.+.....+.-   
T Consensus       197 ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~---  273 (323)
T KOG1036|consen  197 IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY---  273 (323)
T ss_pred             ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC---
Confidence            9999988554321      222333211       137899999999999999999999999999877433222211   


Q ss_pred             eeeeeecCCcEEEEecCCCCccccccCC
Q 006424          506 SCEHFFSEGVSVAVQWPGIGTEQKSLCS  533 (645)
Q Consensus       506 ~~~~~~~~g~~~~v~~s~~~~~l~~~~~  533 (645)
                             ++.+..++|+.+|..||..++
T Consensus       274 -------~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  274 -------ETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             -------CCceEEEEeccCCCeEEEEec
Confidence                   234566777777777775554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.5e-27  Score=242.90  Aligned_cols=245  Identities=22%  Similarity=0.431  Sum_probs=207.9

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      +...|..|.|+|..++|+|++.+++|||+|-.|++|+.++                                        
T Consensus        43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~----------------------------------------   82 (1202)
T KOG0292|consen   43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT----------------------------------------   82 (1202)
T ss_pred             HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc----------------------------------------
Confidence            5667889999999999999999999999999999999987                                        


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                           .+++.++.||-+.|..+.|++.- .++|+|.|.+|+||+..+++++..+ +|...|.|..|+| ....++++|.|
T Consensus        83 -----rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLD  156 (1202)
T KOG0292|consen   83 -----RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLD  156 (1202)
T ss_pred             -----ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEeccc
Confidence                 56678899999999999999875 9999999999999999999999988 5999999999999 89999999999


Q ss_pred             CcEEEEeCCCCc----------------------------EE--EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEec
Q 006424          350 GKVRIWGVCEKR----------------------------VV--DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  399 (645)
Q Consensus       350 g~i~vwd~~~~~----------------------------~~--~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~  399 (645)
                      .+|+|||+..-+                            ++  .+.+|...|+-++|+|.-..+++|+.|..|++|.+.
T Consensus       157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn  236 (1202)
T KOG0292|consen  157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN  236 (1202)
T ss_pred             ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEec
Confidence            999999985411                            11  146788999999999999999999999999999997


Q ss_pred             CCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEE
Q 006424          400 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHII  477 (645)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~  477 (645)
                      ..+. .+    ....++|.+.|+++-|+|.. .++++.++|+.|+|||+.  +..++++.  ..+....++-+|..++++
T Consensus       237 etKa-WE----vDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~v~tfrr--endRFW~laahP~lNLfA  308 (1202)
T KOG0292|consen  237 ETKA-WE----VDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTSVQTFRR--ENDRFWILAAHPELNLFA  308 (1202)
T ss_pred             cccc-ee----ehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccccceeeeec--cCCeEEEEEecCCcceee
Confidence            5432 11    12234457899999999985 799999999999999987  45555554  567788899999999888


Q ss_pred             EEeCCccEEEEeCC
Q 006424          478 SIGDDCRVYVWNYD  491 (645)
Q Consensus       478 t~s~dg~I~iwd~~  491 (645)
                      +|-+ +-+.+|.++
T Consensus       309 AgHD-sGm~VFkle  321 (1202)
T KOG0292|consen  309 AGHD-SGMIVFKLE  321 (1202)
T ss_pred             eecC-CceEEEEEc
Confidence            7754 445555554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=3.6e-28  Score=230.79  Aligned_cols=280  Identities=20%  Similarity=0.370  Sum_probs=229.3

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ....+..|.+.|..+.|-++...|++|+.|..|++|++....                                      
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--------------------------------------  208 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--------------------------------------  208 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch--------------------------------------
Confidence            345578899999999999998899999999999999987632                                      


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                           ...+.++.|-.+.|+.+.|.+++ .+++++.|+.+++|++...+...++ +|.+.|+++.|.. ....+++|+.|
T Consensus       209 -----~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~D  282 (459)
T KOG0288|consen  209 -----SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSAD  282 (459)
T ss_pred             -----hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeecccc
Confidence                 23467788888999999999887 8999999999999999999988888 4999999999987 55559999999


Q ss_pred             CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      .+|++||+....+....-....+..|+.+  ...+++|..|++|++||.++...... +..       ++.|+++..+++
T Consensus       283 RtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s-v~~-------gg~vtSl~ls~~  352 (459)
T KOG0288|consen  283 RTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS-VPL-------GGRVTSLDLSMD  352 (459)
T ss_pred             chhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeE-eec-------CcceeeEeeccC
Confidence            99999999998887766666777777776  56788999999999999998775432 222       268999999999


Q ss_pred             CCcEEEEEECCCeEEEEECCc--ceeeEee--cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcc
Q 006424          430 ESQRIMITSEDSKLRILDGVD--VIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR  505 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~--~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~  505 (645)
                      | ..+++++.|.++.+.|++.  ....+..  .......+.+.|||++.|+++||.||.|+||++.+++........   
T Consensus       353 g-~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s---  428 (459)
T KOG0288|consen  353 G-LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS---  428 (459)
T ss_pred             C-eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC---
Confidence            8 7888889999999999874  3344433  223445889999999999999999999999999998644332211   


Q ss_pred             eeeeeecCCcEEEEecCCCCccccccCCC
Q 006424          506 SCEHFFSEGVSVAVQWPGIGTEQKSLCSS  534 (645)
Q Consensus       506 ~~~~~~~~g~~~~v~~s~~~~~l~~~~~~  534 (645)
                           +.+..+++++|+|.|..|++++.+
T Consensus       429 -----~s~~aI~s~~W~~sG~~Llsadk~  452 (459)
T KOG0288|consen  429 -----TSNAAITSLSWNPSGSGLLSADKQ  452 (459)
T ss_pred             -----CCCcceEEEEEcCCCchhhcccCC
Confidence                 112368999999999999987764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=5.6e-27  Score=210.64  Aligned_cols=285  Identities=15%  Similarity=0.171  Sum_probs=222.4

Q ss_pred             eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424          282 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  359 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  359 (645)
                      .++||+.+++.+.|+.+| +|++|+.|.+..+|-..+|+.+.++. |.+.|+|+..+- +...+++|+.|.++++||+.+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence            467899999999999988 99999999999999998999999984 999999999998 899999999999999999999


Q ss_pred             CcEEEeeccCCCeEEEEEccCCCEEEEEec-----CCeEEEEEecCCce------eeeEEeeccccccCCCCeEEEEEcC
Q 006424          360 KRVVDWADVRDVISAICYIPDGKGFIVGSI-----TGTCHFYKASGNDL------KLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       360 ~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-----dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      ++++.....+.+|..+.|+++|++++..+.     .+.|.++|++....      +...+..      +...++.+.|.|
T Consensus        84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t------~~skit~a~Wg~  157 (327)
T KOG0643|consen   84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT------PDSKITSALWGP  157 (327)
T ss_pred             CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC------Cccceeeeeecc
Confidence            999999999999999999999998887754     46799999984432      1222222      247899999999


Q ss_pred             CCCcEEEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCccee
Q 006424          429 DESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC  507 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  507 (645)
                      -+ .+|++|..||.|.+||.++...... ...|...|+.+.+++|..+++|+|.|.+-++||+.+.........      
T Consensus       158 l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t------  230 (327)
T KOG0643|consen  158 LG-ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT------  230 (327)
T ss_pred             cC-CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee------
Confidence            97 8999999999999999987544433 355888999999999999999999999999999998754333322      


Q ss_pred             eeeecCCcEEEEecCCCCcccc-----------ccCCCCccccCccccc--cccCCccCCCCccccCccccCCCCCCcCC
Q 006424          508 EHFFSEGVSVAVQWPGIGTEQK-----------SLCSSSLRDCSQKWDN--LETAPWIRDSERFSLGSWFSNDGPCRGSA  574 (645)
Q Consensus       508 ~~~~~~g~~~~v~~s~~~~~l~-----------~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~fs~dg~~l~s~  574 (645)
                           +.++.+++.+|-...+.           +..........++.+.  .+......+|-+.+.+++|+|||+.-+|+
T Consensus       231 -----e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSG  305 (327)
T KOG0643|consen  231 -----ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSG  305 (327)
T ss_pred             -----cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccC
Confidence                 33444445554333222           1111111111111121  22333677888899999999999999998


Q ss_pred             CCCCCcCCCCCC
Q 006424          575 TWPAEKLPLWDV  586 (645)
Q Consensus       575 s~~d~~i~iWd~  586 (645)
                      .. ||.+++.-.
T Consensus       306 GE-DG~VR~h~F  316 (327)
T KOG0643|consen  306 GE-DGYVRLHHF  316 (327)
T ss_pred             CC-CceEEEEEe
Confidence            88 898887643

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.3e-27  Score=207.54  Aligned_cols=285  Identities=18%  Similarity=0.241  Sum_probs=226.9

Q ss_pred             chhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccc
Q 006424           94 CMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKAN  173 (645)
Q Consensus        94 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (645)
                      .-++.|..+|..|..+-+..++++ -.++..            |++++.|                              
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY-~ltcGs------------drtvrLW------------------------------   44 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNY-CLTCGS------------DRTVRLW------------------------------   44 (307)
T ss_pred             hhceeecccccceEEEEEccCCCE-EEEcCC------------CceEEee------------------------------
Confidence            345577888889999999999887 444555            5655555                              


Q ss_pred             hhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCce
Q 006424          174 KMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK  253 (645)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (645)
                           +..       +-.+++++.+|...|..++.+.|...+++|+.|+.+.+||+.+                      
T Consensus        45 -----Np~-------rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T----------------------   90 (307)
T KOG0316|consen   45 -----NPL-------RGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT----------------------   90 (307)
T ss_pred             -----ccc-------ccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc----------------------
Confidence                 111       1226788999999999999999999999999999999999998                      


Q ss_pred             EEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC--eEEEEec-CCCc
Q 006424          254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVFD-HHNY  329 (645)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~--~~~~~~~-~~~~  329 (645)
                                             ++.++.+.+|.+.|+.+.|+.+. .+++|+.|.++++||.++.  ++++.+. ..+.
T Consensus        91 -----------------------Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~  147 (307)
T KOG0316|consen   91 -----------------------GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG  147 (307)
T ss_pred             -----------------------CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc
Confidence                                   67789999999999999999875 8999999999999999754  5677775 6778


Q ss_pred             EEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424          330 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD  409 (645)
Q Consensus       330 v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~  409 (645)
                      |.++..   .+..++.|+.||+++.||++.+.... .....+|++++|+++++..++++.|+++++.|-.+++.....  
T Consensus       148 V~Si~v---~~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY--  221 (307)
T KOG0316|consen  148 VSSIDV---AEHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY--  221 (307)
T ss_pred             eeEEEe---cccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh--
Confidence            999988   46889999999999999999988654 334568999999999999999999999999999988765432  


Q ss_pred             eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCC-eEEEEEecCCCEEEEEeCCccEEEE
Q 006424          410 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS-QMSASFTTTGKHIISIGDDCRVYVW  488 (645)
Q Consensus       410 ~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~-i~~v~~sp~~~~l~t~s~dg~I~iw  488 (645)
                       .++..  ...-...+++... .++++|++||.|++||+.+.....+...+... +.+++++|....++++. ++.+..|
T Consensus       222 -kGhkn--~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~  296 (307)
T KOG0316|consen  222 -KGHKN--MEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFW  296 (307)
T ss_pred             -ccccc--ceeeeeeeecccc-eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceece
Confidence             22111  1122344566554 79999999999999998876666665556666 89999999988888876 4556666


Q ss_pred             e
Q 006424          489 N  489 (645)
Q Consensus       489 d  489 (645)
                      -
T Consensus       297 ~  297 (307)
T KOG0316|consen  297 Y  297 (307)
T ss_pred             e
Confidence            4

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=3.2e-27  Score=229.92  Aligned_cols=290  Identities=19%  Similarity=0.294  Sum_probs=218.1

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      -.|++|+..|.++++.|.|..|+|||.|-+|++||+.........                                   
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-----------------------------------  205 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-----------------------------------  205 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-----------------------------------
Confidence            348899999999999999999999999999999999874332211                                   


Q ss_pred             eccCCCceee-ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE-------------ecCCCcEEEEEEeeC
Q 006424          274 QIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-------------FDHHNYVTCVQFNPI  338 (645)
Q Consensus       274 ~~~~~~~~~l-~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~-------------~~~~~~v~~l~~~p~  338 (645)
                            .+.+ ......|.++.|++.+ .|+..+.....+|+|-...+.+..             -+|...++|.+|+|.
T Consensus       206 ------fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~  279 (641)
T KOG0772|consen  206 ------FRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD  279 (641)
T ss_pred             ------hhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccC
Confidence                  1122 2344579999999986 777777778999999764443322             148889999999998


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCc-EEEe------eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeec
Q 006424          339 DDNYFISGSIDGKVRIWGVCEKR-VVDW------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH  411 (645)
Q Consensus       339 ~~~~l~s~s~dg~i~vwd~~~~~-~~~~------~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  411 (645)
                      +.+.+++++.||++++||+...+ ....      .+.+-.+++++|+|+|+.||+|+.||.|.+|+.......... .+ 
T Consensus       280 ~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~-~v-  357 (641)
T KOG0772|consen  280 NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM-KV-  357 (641)
T ss_pred             cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccce-Ee-
Confidence            88899999999999999997633 2221      233457899999999999999999999999998655433221 11 


Q ss_pred             cccccC--CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc---eeeEeecCCCCCeEEEEEecCCCEEEEEeC-----
Q 006424          412 DRKKTS--GNKITGIQFSRDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGD-----  481 (645)
Q Consensus       412 ~~~~~~--~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~-----  481 (645)
                        ...|  +..|+|+.||++| ++|++-+.|+++++||+++.   +....+.....+-+.++|||+.++|+||+.     
T Consensus       358 --k~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~  434 (641)
T KOG0772|consen  358 --KDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM  434 (641)
T ss_pred             --eeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC
Confidence              1122  3489999999998 89999999999999998854   444455555667789999999999999874     


Q ss_pred             -CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCcccc
Q 006424          482 -DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDC  539 (645)
Q Consensus       482 -dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~  539 (645)
                       .|.+++||..+.......          +-+...+..+.|+|--..+...++++..+.
T Consensus       435 ~~g~L~f~d~~t~d~v~ki----------~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v  483 (641)
T KOG0772|consen  435 TAGTLFFFDRMTLDTVYKI----------DISTASVVRCLWHPKLNQIFAGSGDGTAHV  483 (641)
T ss_pred             CCceEEEEeccceeeEEEe----------cCCCceEEEEeecchhhheeeecCCCceEE
Confidence             478999997765322211          122455778899998777776666655443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5.4e-27  Score=209.30  Aligned_cols=201  Identities=18%  Similarity=0.324  Sum_probs=167.9

Q ss_pred             CccCeEEEEEcCC--CeEEEEeCCCcEEEEecCC-CeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-
Q 006424          286 HKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGC-NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-  360 (645)
Q Consensus       286 h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~-~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~-  360 (645)
                      -.+.+..++|+++  +.+++++.||++++||... ..++..++ |...|.++.|++.....++++|.|++|++|+...+ 
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            4578999999976  4899999999999999642 34566664 99999999999988888999999999999997654 


Q ss_pred             cEEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424          361 RVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  439 (645)
Q Consensus       361 ~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~  439 (645)
                      .+.++.+|...|....|+| ..+.+++++.||.+++||++....... +..+      ...|.|+.|+.-+.+.+++|+.
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah------~~Eil~cdw~ky~~~vl~Tg~v  211 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAH------NSEILCCDWSKYNHNVLATGGV  211 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEec------cceeEeecccccCCcEEEecCC
Confidence            4666889999999999999 577999999999999999987654333 3333      3689999999987789999999


Q ss_pred             CCeEEEEECCcce-eeEeecCCCCCeEEEEEecC-CCEEEEEeCCccEEEEeCCCC
Q 006424          440 DSKLRILDGVDVI-HKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       440 dg~I~iwd~~~~~-~~~~~~~~~~~i~~v~~sp~-~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      |+.|+.||++... ..+....|.-.|..+.|||. ...||+++.|-+++|||...+
T Consensus       212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             CceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence            9999999987432 23344558889999999996 468999999999999998755

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=1.2e-26  Score=218.42  Aligned_cols=252  Identities=18%  Similarity=0.270  Sum_probs=211.6

Q ss_pred             cccccccccCcEEEEEECCCC---CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          192 TSQEIQAHKGCIWTLKFSPDG---RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg---~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      ..+++.||.++|.+++|.-..   ..++++|.|.++++|.++.+...                                 
T Consensus       136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~---------------------------------  182 (423)
T KOG0313|consen  136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK---------------------------------  182 (423)
T ss_pred             eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh---------------------------------
Confidence            567789999999988885433   36999999999999998764321                                 


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC-------------------------CeEEE
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------------------------NQCLN  322 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~-------------------------~~~~~  322 (645)
                              .+.+....||...|-+++..+++ .+++||.|.+|++|+..+                         +.++.
T Consensus       183 --------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  183 --------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             --------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence                    12233445999999999999887 999999999999999321                         11223


Q ss_pred             Ee-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC
Q 006424          323 VF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  401 (645)
Q Consensus       323 ~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~  401 (645)
                      ++ +|..+|.++.|++  ...+++++.|.+|+.||+.++...........++++.++|..++|++|+.|..+++||.+++
T Consensus       255 tl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             EecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence            33 5999999999986  77899999999999999999999888888899999999999999999999999999999988


Q ss_pred             ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce-eeEeecCCCCCeEEEEEecCCCEEEEEe
Q 006424          402 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      .-......+.+    |.+.|.++.|+|.+...|++++.|+++++||.+... ..+....|...|.++.|. ++.+|++||
T Consensus       333 ~gs~v~~s~~g----H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGG  407 (423)
T KOG0313|consen  333 DGSVVSQSLIG----HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGG  407 (423)
T ss_pred             CCceeEEeeec----chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEecc
Confidence            76665555555    468999999999988899999999999999999665 566677799999999996 577999999


Q ss_pred             CCccEEEEeCC
Q 006424          481 DDCRVYVWNYD  491 (645)
Q Consensus       481 ~dg~I~iwd~~  491 (645)
                      .|.+|+|+...
T Consensus       408 aD~~l~i~~~~  418 (423)
T KOG0313|consen  408 ADNKLRIFKGS  418 (423)
T ss_pred             CcceEEEeccc
Confidence            99999999754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.5e-26  Score=211.28  Aligned_cols=243  Identities=21%  Similarity=0.338  Sum_probs=204.9

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ..-.+.+|.++|++++.  +|.|+||||.|-+|+|||+..                                        
T Consensus        35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k----------------------------------------   72 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK----------------------------------------   72 (362)
T ss_pred             ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccc----------------------------------------
Confidence            34457899999999999  588999999999999999987                                        


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC---eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS  347 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s  347 (645)
                           ...+..+-.|.+.|+++.|.+.-   .|++|+.||.|.+|+...-.++..+. |...|+.++.+| .+++.++.+
T Consensus        73 -----~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg  146 (362)
T KOG0294|consen   73 -----RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVG  146 (362)
T ss_pred             -----hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEc
Confidence                 45567777899999999999763   89999999999999999999999986 888999999999 999999999


Q ss_pred             CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424          348 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  427 (645)
Q Consensus       348 ~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s  427 (645)
                      .|+.+++||+-.++.-.........+.+.|+|.|.+++++..+ .|-+|.+.+...... +..       ...+.|+.|.
T Consensus       147 ~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~-i~~-------~~r~l~~~~l  217 (362)
T KOG0294|consen  147 GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFRE-IEN-------PKRILCATFL  217 (362)
T ss_pred             CCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhh-hhc-------cccceeeeec
Confidence            9999999999988877766666677779999999999988765 678888876554221 111       1457788887


Q ss_pred             CCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEE--ecCCCEEEEEeCCccEEEEeCCCC
Q 006424          428 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF--TTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       428 ~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~--sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ..  ..+++|..|+.|.+||............|...|.++.+  .|++.+|+|+|+||.|+|||++..
T Consensus       218 ~~--~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  218 DG--SELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             CC--ceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            65  58999999999999998765555555668999999884  567889999999999999999876

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=1.3e-27  Score=212.61  Aligned_cols=245  Identities=18%  Similarity=0.287  Sum_probs=208.7

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      +-+|.||++.|++...+.+...-|+++.|-+-++||.-+                                         
T Consensus        52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t-----------------------------------------   90 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT-----------------------------------------   90 (334)
T ss_pred             EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh-----------------------------------------
Confidence            346889999999999999998999999999999999877                                         


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE-EEEe-cCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC-LNVF-DHHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~-~~~~-~~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                          +..+..+. |..-|.+++|+.|. +|++|+.+..++|+|++..+. ...+ +|++.|..+.|.. ..+.+++++.|
T Consensus        91 ----gdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd  164 (334)
T KOG0278|consen   91 ----GDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADD  164 (334)
T ss_pred             ----hhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccC
Confidence                34456665 88999999999875 999999999999999976543 3334 5999999999998 78888888999


Q ss_pred             CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      ++||+||.+++..+.....+.+|+++.++++|+++.++ ..+.|.+||..+..... ...+       ...|.+.+++|+
T Consensus       165 ~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lK-s~k~-------P~nV~SASL~P~  235 (334)
T KOG0278|consen  165 KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLK-SYKM-------PCNVESASLHPK  235 (334)
T ss_pred             CceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEecccccccee-eccC-------ccccccccccCC
Confidence            99999999999999999999999999999999877665 46789999998776532 2222       257899999999


Q ss_pred             CCcEEEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          430 ESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      . ..+++|++|..++.||..+....-. ...|.++|.++.|+|+|...++||+||+|++|.+..++
T Consensus       236 k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  236 K-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             C-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            6 8999999999999999775444333 35689999999999999999999999999999987764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=7.2e-28  Score=225.06  Aligned_cols=248  Identities=19%  Similarity=0.311  Sum_probs=193.4

Q ss_pred             ccccccccCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          193 SQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ...|.||.+.|.|++=+|.. ..+|||+.||.|+|||+...                                       
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---------------------------------------   99 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---------------------------------------   99 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---------------------------------------
Confidence            34579999999999999987 78999999999999999873                                       


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEE--------------------------------------
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW--------------------------------------  313 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iw--------------------------------------  313 (645)
                            .....+..|.+.|..|++.. +.+++++.|.+|+.|                                      
T Consensus       100 ------~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IW  172 (433)
T KOG0268|consen  100 ------ECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIW  172 (433)
T ss_pred             ------hhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeec
Confidence                  33445555555555555543 345555555555555                                      


Q ss_pred             ecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCe
Q 006424          314 QVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGT  392 (645)
Q Consensus       314 d~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~  392 (645)
                      |.....++..+. ....|.++.|+|....+|++|+.|+.|.+||++++..+.-.-....-+.++|+|.+-.+++|++|..
T Consensus       173 D~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~n  252 (433)
T KOG0268|consen  173 DEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHN  252 (433)
T ss_pred             ccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeecccccc
Confidence            444444444444 3456899999998888999999999999999999998887777777889999998889999999999


Q ss_pred             EEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEee-cCCCCCeEEEEEec
Q 006424          393 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTT  471 (645)
Q Consensus       393 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp  471 (645)
                      ++.||++....+..      ....|.+.|.++.|+|.| +-+++||.|.+|+||..+.....-.. ......|.++.||.
T Consensus       253 lY~~DmR~l~~p~~------v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~  325 (433)
T KOG0268|consen  253 LYTYDMRNLSRPLN------VHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM  325 (433)
T ss_pred             ceehhhhhhcccch------hhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec
Confidence            99999997766543      223456899999999998 89999999999999997643221111 11345799999999


Q ss_pred             CCCEEEEEeCCccEEEEeCCCC
Q 006424          472 TGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       472 ~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      |.+|+++||+|+.|++|.-...
T Consensus       326 Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  326 DSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             cccEEEecCCCcceeeeecchh
Confidence            9999999999999999987654

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.8e-25  Score=234.82  Aligned_cols=257  Identities=17%  Similarity=0.195  Sum_probs=190.7

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      |-..|+...+++|+..+++++.+.....|+...+.... .....+.                               ...
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~-~~~~~G~-------------------------------~~~   66 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVL-KHTDYGK-------------------------------LAS   66 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEe-ecccccc-------------------------------CCC
Confidence            44557777788898888999999989999876532110 0000000                               011


Q ss_pred             CceeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCCe-------EEEEe-cCCCcEEEEEEeeCCCCEEEEEeC
Q 006424          279 PLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQ-------CLNVF-DHHNYVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~-------~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~  348 (645)
                      ....+.+|.+.|++++|+| ++ +|++|+.|++|++||+.++.       ++..+ +|...|.+++|+|..+++|++|+.
T Consensus        67 ~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~  146 (493)
T PTZ00421         67 NPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA  146 (493)
T ss_pred             CCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence            1235779999999999998 55 89999999999999997652       33444 588999999999944579999999


Q ss_pred             CCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424          349 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  427 (645)
Q Consensus       349 dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s  427 (645)
                      |++|++||+++++... +..|...|.+++|+|+|.+|++++.||.|++||+++..... .+..+.     ......+.|.
T Consensus       147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~-tl~~H~-----~~~~~~~~w~  220 (493)
T PTZ00421        147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS-SVEAHA-----SAKSQRCLWA  220 (493)
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE-EEecCC-----CCcceEEEEc
Confidence            9999999999887654 56788999999999999999999999999999999876432 222221     1334567888


Q ss_pred             CCCCcEEEEEE----CCCeEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCC
Q 006424          428 RDESQRIMITS----EDSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELC  494 (645)
Q Consensus       428 ~~g~~~l~~~s----~dg~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~  494 (645)
                      +++ ..+++++    .|+.|++||+++....+..  ......+....|++++++|++++ .||.|++||+.++.
T Consensus       221 ~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        221 KRK-DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             CCC-CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence            886 4555543    4799999998754333322  12334566678999999999887 59999999998764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.9e-26  Score=221.80  Aligned_cols=247  Identities=21%  Similarity=0.358  Sum_probs=207.4

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      +++....+.|.++.|-.||++||+|...|.|+|+|..+                                          
T Consensus        62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~------------------------------------------   99 (487)
T KOG0310|consen   62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS------------------------------------------   99 (487)
T ss_pred             hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc------------------------------------------
Confidence            33445667899999999999999999999999999654                                          


Q ss_pred             eccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                         ...++.+.+|+.+|..+.|+|++  .+++|+.|+.+++||+.+......+ +|++.|.|.+|+|.++.++++||.||
T Consensus       100 ---r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg  176 (487)
T KOG0310|consen  100 ---RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDG  176 (487)
T ss_pred             ---HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCc
Confidence               33467889999999999999874  7889999999999999988864344 59999999999998888999999999


Q ss_pred             cEEEEeCCCC-cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          351 KVRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       351 ~i~vwd~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      .|++||++.. ..+....|..+|..+.+-|.|..+++++ ...+++||+.++......      ...|...|+|+.+..+
T Consensus       177 ~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~------~~~H~KtVTcL~l~s~  249 (487)
T KOG0310|consen  177 KVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTS------MFNHNKTVTCLRLASD  249 (487)
T ss_pred             eEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhh------hhcccceEEEEEeecC
Confidence            9999999987 6667789999999999999999998876 568999999866543321      1124578999999999


Q ss_pred             CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      + ..|++++-|+.|++||..+....... ...++|.+++.+|+++.++.|-.||.+.+=+....+
T Consensus       250 ~-~rLlS~sLD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  250 S-TRLLSGSLDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             C-ceEeecccccceEEEEccceEEEEee-ecccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence            7 89999999999999996654443333 367899999999999999999999998887555443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=4.4e-26  Score=214.51  Aligned_cols=265  Identities=20%  Similarity=0.320  Sum_probs=215.2

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      -|.+.|.++...  +++++||+.||.+++||..                                              +
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~----------------------------------------------G  134 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK----------------------------------------------G  134 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecC----------------------------------------------C
Confidence            489999999887  7799999999999999986                                              5


Q ss_pred             CCceeeccCccCeEEEEEcC-C---CeEEEEeCCCcEEEEecCCCeEEEE-----ecCCCcEEEEEEeeCCCCEEEEEeC
Q 006424          278 SPLQELHGHKGDVLDLAWSN-S---NYLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~-~---~~l~s~s~dg~I~iwd~~~~~~~~~-----~~~~~~v~~l~~~p~~~~~l~s~s~  348 (645)
                      +....+.||.++|.+++|.. +   ..+++++.|.++++|.++.+.....     -+|...|.++...+ ++..+++|+.
T Consensus       135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~  213 (423)
T KOG0313|consen  135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSW  213 (423)
T ss_pred             ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecc
Confidence            66788899999999999863 2   2699999999999999887654322     26999999999999 9999999999


Q ss_pred             CCcEEEEeCCCC--------------------------cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCc
Q 006424          349 DGKVRIWGVCEK--------------------------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  402 (645)
Q Consensus       349 dg~i~vwd~~~~--------------------------~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~  402 (645)
                      |.+|.+|+..+.                          .++.+.+|..+|.++.|++ ...+++++.|.+|+.||+.+..
T Consensus       214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG  292 (423)
T ss_pred             cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence            999999993210                          1445789999999999987 6689999999999999999887


Q ss_pred             eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc---ceeeEeecCCCCCeEEEEEecCCC-EEEE
Q 006424          403 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGK-HIIS  478 (645)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~i~~v~~sp~~~-~l~t  478 (645)
                      ......   .     ...++|+.++|.. .+|++|+.|..+++||.+.   .........|...|.++.|+|... .|++
T Consensus       293 ~~~~~~---~-----~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S  363 (423)
T KOG0313|consen  293 LKSTLT---T-----NKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS  363 (423)
T ss_pred             ceeeee---c-----CcceeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence            654322   2     2679999999985 8999999999999999773   233444455888999999999654 6788


Q ss_pred             EeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccc
Q 006424          479 IGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS  530 (645)
Q Consensus       479 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~  530 (645)
                      |+.|+++++||+++...++..         ...++..++++.|+..+..+..
T Consensus       364 ~S~D~t~klWDvRS~k~plyd---------I~~h~DKvl~vdW~~~~~IvSG  406 (423)
T KOG0313|consen  364 GSYDNTVKLWDVRSTKAPLYD---------IAGHNDKVLSVDWNEGGLIVSG  406 (423)
T ss_pred             EecCCeEEEEEeccCCCccee---------eccCCceEEEEeccCCceEEec
Confidence            999999999999987533332         1224778999999987655443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=8.8e-26  Score=207.62  Aligned_cols=303  Identities=18%  Similarity=0.262  Sum_probs=207.1

Q ss_pred             chhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCce---------------eee
Q 006424          173 NKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA---------------SCK  237 (645)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~---------------~~~  237 (645)
                      +..+..+.+.+...|.+.....+|++|.+.|++++|+.||++|||++.|++|++|+++....               ...
T Consensus        59 ~hqr~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V  138 (420)
T KOG2096|consen   59 KHQRNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRV  138 (420)
T ss_pred             cccchhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEE
Confidence            33444555666667888888999999999999999999999999999999999999886322               122


Q ss_pred             EecCCCCcccCCCCceEEecccCCCcceeecCCCcee----ccC---CCceeeccCccCeEEEEEcCCC-eEEEEeCCCc
Q 006424          238 SFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ----IEE---SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT  309 (645)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~  309 (645)
                      .|.++..        .+.++...+....+....+.-+    ...   ....--+.|.-.|..+-...++ ++++++.|..
T Consensus       139 ~FapDc~--------s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~  210 (420)
T KOG2096|consen  139 VFAPDCK--------SVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK  210 (420)
T ss_pred             EECCCcc--------eEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc
Confidence            2222222        2222222222222211110000    000   0011112355566666655555 8999999999


Q ss_pred             EEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC---CC------cEEEeeccCCCeEEEEEcc
Q 006424          310 VRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC---EK------RVVDWADVRDVISAICYIP  379 (645)
Q Consensus       310 I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~---~~------~~~~~~~~~~~v~~l~~sp  379 (645)
                      |.+|+++ |+.+..+. ....-+..+.+| +|+++++++...-|++|.+-   .|      +...+.+|...|..++|++
T Consensus       211 i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn  288 (420)
T KOG2096|consen  211 ICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN  288 (420)
T ss_pred             EEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence            9999999 88888886 334566778999 99999999999999999863   22      3456889999999999999


Q ss_pred             CCCEEEEEecCCeEEEEEecCCceeee---EEe-eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--e
Q 006424          380 DGKGFIVGSITGTCHFYKASGNDLKLE---KVD-FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--H  453 (645)
Q Consensus       380 ~g~~l~~g~~dg~i~iwd~~~~~~~~~---~~~-~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~  453 (645)
                      +...+++.+.||++++||..-......   .+. ........++.-..+.++|+| . +++.+....++++..++..  .
T Consensus       289 ~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~-~lA~s~gs~l~~~~se~g~~~~  366 (420)
T KOG2096|consen  289 SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-D-SLAVSFGSDLKVFASEDGKDYP  366 (420)
T ss_pred             CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-c-EEEeecCCceEEEEcccCccch
Confidence            999999999999999999863221100   000 001111223445589999998 4 4445556789999866422  2


Q ss_pred             eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          454 KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       454 ~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                      .+. ..|...|.+++|+++|++++|++ |..+++..
T Consensus       367 ~~e-~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  367 ELE-DIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             hHH-HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            222 34889999999999999999997 67777765

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.4e-26  Score=207.43  Aligned_cols=204  Identities=23%  Similarity=0.370  Sum_probs=174.5

Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  356 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd  356 (645)
                      +.+.+|...|.+++|+-+| .|++|+.|+++.+|+++..+.....   +|.+.|-.++|+|...+.+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5677899999999999988 9999999999999999877555443   48889999999998899999999999999999


Q ss_pred             CCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          357 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       357 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      ++.+++.........-.-+.|+|+|.+++++..|..|.+.|.++.+.... ..+       ...+.-++|+.++ .+++.
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~-~~~-------~~e~ne~~w~~~n-d~Ffl  164 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE-EQF-------KFEVNEISWNNSN-DLFFL  164 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh-hcc-------cceeeeeeecCCC-CEEEE
Confidence            99999988777777777789999999999999999999999997765332 111       2457778888776 67777


Q ss_pred             EECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          437 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       437 ~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ...-|+|.|..............|.....++.|+|+|+|+|+|+.|..+.+||++..
T Consensus       165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL  221 (313)
T KOG1407|consen  165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL  221 (313)
T ss_pred             ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh
Confidence            777899999987766666666668899999999999999999999999999999865

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=3.2e-25  Score=232.98  Aligned_cols=234  Identities=18%  Similarity=0.251  Sum_probs=181.8

Q ss_pred             ccccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          195 EIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       195 ~l~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      .+.+|.+.|++++|+| ++++|++|+.||+|++||+.+.....                                     
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-------------------------------------  112 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-------------------------------------  112 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-------------------------------------
Confidence            3779999999999999 88999999999999999997531100                                     


Q ss_pred             eccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                       ....++..+.+|...|.+++|+|++  .|++|+.|++|++||+++++.+..+. |...|.+++|+| ++++|++++.|+
T Consensus       113 -~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg  190 (493)
T PTZ00421        113 -NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDK  190 (493)
T ss_pred             -ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCC
Confidence             0124567888999999999999863  89999999999999999999888875 888999999999 999999999999


Q ss_pred             cEEEEeCCCCcEEE-eeccCCC-eEEEEEccCCCEEEEEe----cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424          351 KVRIWGVCEKRVVD-WADVRDV-ISAICYIPDGKGFIVGS----ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       351 ~i~vwd~~~~~~~~-~~~~~~~-v~~l~~sp~g~~l~~g~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                      +|++||+++++.+. +..|.+. +..+.|.+++..+++++    .|+.|++||++....+........     ...+...
T Consensus       191 ~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-----~~~~~~~  265 (493)
T PTZ00421        191 KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-----SSALFIP  265 (493)
T ss_pred             EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC-----CCceEEE
Confidence            99999999887654 5556544 45678888887777654    478999999987654433322222     2456667


Q ss_pred             EEcCCCCcEEEEEE-CCCeEEEEECCcceeeEee-cCCCCCeEEEEEecCC
Q 006424          425 QFSRDESQRIMITS-EDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTG  473 (645)
Q Consensus       425 ~~s~~g~~~l~~~s-~dg~I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp~~  473 (645)
                      .|++++ .++++++ .|+.|++||+.+....+.. ..+..++.+++|.|..
T Consensus       266 ~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        266 FFDEDT-NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             EEcCCC-CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            789997 6777766 5999999998754333222 2245567888888853

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.1e-25  Score=217.03  Aligned_cols=294  Identities=18%  Similarity=0.265  Sum_probs=230.4

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      .+.+..|.-+|+||+++|++++.++++.||+|.=|++.++......+..+..                            
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev----------------------------  186 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV----------------------------  186 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh----------------------------
Confidence            4556789999999999999999999999999999999886543111111100                            


Q ss_pred             eeccCCCceee-ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          273 FQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       273 ~~~~~~~~~~l-~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                      ....+.+...- .+|...+.+++.++|+ +|++|+.|..|.||+.++.+.++.+ +|.+.|.+++|-. ..+.+++++.|
T Consensus       187 ~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~D  265 (479)
T KOG0299|consen  187 LKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASAD  265 (479)
T ss_pred             hhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecC
Confidence            00001112222 4899999999999998 9999999999999999999999997 4999999999998 77889999999


Q ss_pred             CcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          350 GKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       350 g~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      ++|++|++.....+ .+.+|++.|.++.....++.+.+|+.|+++++|++......+    +.+    +.+.+-|++|-.
T Consensus       266 rsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli----frg----~~~sidcv~~In  337 (479)
T KOG0299|consen  266 RSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI----FRG----GEGSIDCVAFIN  337 (479)
T ss_pred             CceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceee----eeC----CCCCeeeEEEec
Confidence            99999999886655 488999999999999889999999999999999995443322    222    247899999998


Q ss_pred             CCCcEEEEEECCCeEEEEECCcceeeEee--c----------CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424          429 DESQRIMITSEDSKLRILDGVDVIHKFKG--L----------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  496 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~--~----------~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~  496 (645)
                      +  ..+++|+.+|.|.+|++.+....+..  .          .+..+|++++..|...++++|+.+|.|++|-+.++...
T Consensus       338 ~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~  415 (479)
T KOG0299|consen  338 D--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA  415 (479)
T ss_pred             c--cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence            8  58999999999999997643333322  1          11238999999999999999999999999999887321


Q ss_pred             CCcccCCcceeeeeecCCcEEEEecCCCCccccccC
Q 006424          497 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLC  532 (645)
Q Consensus       497 ~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~  532 (645)
                      .       .....++-.|.+++++|+++|..++...
T Consensus       416 i-------~~l~~ls~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  416 I-------NLLYSLSLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             c-------ceeeecccccEEEEEEEccCCCEEEEec
Confidence            1       1222334578899999999999666443

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.2e-24  Score=229.36  Aligned_cols=231  Identities=16%  Similarity=0.207  Sum_probs=170.1

Q ss_pred             CCceeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCe--------EEEEe-cCCCcEEEEEEeeCCCC-EEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQ--------CLNVF-DHHNYVTCVQFNPIDDN-YFIS  345 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~--------~~~~~-~~~~~v~~l~~~p~~~~-~l~s  345 (645)
                      .++..+.+|.+.|.+++|+|+ + +|++|+.|++|++||+.++.        ++..+ +|...|.+++|+| ++. ++++
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaS  143 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCS  143 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEE
Confidence            446788899999999999986 4 89999999999999997542        22233 5889999999999 665 5679


Q ss_pred             EeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe----
Q 006424          346 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI----  421 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i----  421 (645)
                      ++.|++|++||+++++......+...|.+++|+|+|.+|++++.|+.|++||+++...... +  .++    .+.+    
T Consensus       144 gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t-l--~gH----~g~~~s~~  216 (568)
T PTZ00420        144 SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS-F--HIH----DGGKNTKN  216 (568)
T ss_pred             EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE-E--ecc----cCCceeEE
Confidence            9999999999999987665555778899999999999999999999999999998765432 2  222    2222    


Q ss_pred             -EEEEEcCCCCcEEEEEECCC----eEEEEECCc---ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          422 -TGIQFSRDESQRIMITSEDS----KLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       422 -~~i~~s~~g~~~l~~~s~dg----~I~iwd~~~---~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                       ....|++++ .++++++.|+    .|+|||++.   .+.......+.+.+......+++.++++|+.|+.|++|++..+
T Consensus       217 v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        217 IWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence             223456786 6788877664    799999874   3334444334444444445566899999999999999999765


Q ss_pred             CcCCCcccCCcceeeeeecCCcEEEEecCCCCc
Q 006424          494 CFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT  526 (645)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~  526 (645)
                      ..         ..+..+.+..+..+++|.|...
T Consensus       296 ~~---------~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        296 SI---------RKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             cE---------EeecccccCCCccceEEccccc
Confidence            21         1112333445556677777653

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=6.2e-25  Score=231.55  Aligned_cols=240  Identities=16%  Similarity=0.222  Sum_probs=181.9

Q ss_pred             cccccccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      ....+.+|.+.|++++|+|+ +.+||||+.||+|+|||+.+......                                 
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~---------------------------------  112 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK---------------------------------  112 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc---------------------------------
Confidence            45568899999999999997 78999999999999999975311000                                 


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~  348 (645)
                          ....++..+.+|...|.+++|+|++  .+++++.|++|++||+++++.+..+.+...|.+++|+| ++.+|++++.
T Consensus       113 ----~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~  187 (568)
T PTZ00420        113 ----EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCV  187 (568)
T ss_pred             ----ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEec
Confidence                0012345678999999999999986  46799999999999999998887777888999999999 9999999999


Q ss_pred             CCcEEEEeCCCCcEEE-eeccCCCeEE-----EEEccCCCEEEEEecCC----eEEEEEecCCceeeeEEeeccccccCC
Q 006424          349 DGKVRIWGVCEKRVVD-WADVRDVISA-----ICYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKKTSG  418 (645)
Q Consensus       349 dg~i~vwd~~~~~~~~-~~~~~~~v~~-----l~~sp~g~~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~  418 (645)
                      |+.|++||+++++... +..|.+.+.+     ..|++++.++++++.++    .|++||++....+.........    .
T Consensus       188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~----~  263 (568)
T PTZ00420        188 GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA----S  263 (568)
T ss_pred             CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC----c
Confidence            9999999999987654 5667665433     33568889999887764    7999999965444443333321    1


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-eeeEeecCCCCCeEEEEEecCCC
Q 006424          419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGK  474 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~  474 (645)
                      +.+...-..++| .++++|+.|+.|++|++... ...+....+..++.+++|.|...
T Consensus       264 ~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        264 APLIPHYDESTG-LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             cceEEeeeCCCC-CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence            233333334445 88999999999999998643 33333344667888999999653

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=1.3e-24  Score=211.31  Aligned_cols=317  Identities=12%  Similarity=0.090  Sum_probs=228.3

Q ss_pred             cCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-----
Q 006424          288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-----  361 (645)
Q Consensus       288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~-----  361 (645)
                      ..|.|++|.++|.+++|..+|.|.||+..+.+..+.. .|.+.|.+++... +| .|++|+.|+.|..||-.-.+     
T Consensus       247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr-~G-tllSGgKDRki~~Wd~~y~k~r~~e  324 (626)
T KOG2106|consen  247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR-DG-TLLSGGKDRKIILWDDNYRKLRETE  324 (626)
T ss_pred             eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec-Cc-cEeecCccceEEecccccccccccc
Confidence            6799999999999999999999999999877765544 6999999999987 66 45669999999999832111     


Q ss_pred             ------------------------------------EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceee
Q 006424          362 ------------------------------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  405 (645)
Q Consensus       362 ------------------------------------~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~  405 (645)
                                                          .....+|.+....++.+|+...+++++.|+.+++|+  ..+...
T Consensus       325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w  402 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW  402 (626)
T ss_pred             CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE
Confidence                                                112355667788899999999999999999999999  333222


Q ss_pred             eEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccE
Q 006424          406 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRV  485 (645)
Q Consensus       406 ~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I  485 (645)
                      . ..+       ..++.|+.|+|.|  .++.|+..|...+.|..+ ......+....+++.+.|+|+|.+||.|+.|+.|
T Consensus       403 t-~~~-------~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~-~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~i  471 (626)
T KOG2106|consen  403 T-KII-------EDPAECADFHPSG--VVAVGTATGRWFVLDTET-QDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHI  471 (626)
T ss_pred             E-EEe-------cCceeEeeccCcc--eEEEeeccceEEEEeccc-ceeEEEEecCCceEEEEEcCCCCEEEEecCCCeE
Confidence            2 112       2678999999997  899999999999999876 3444454468899999999999999999999999


Q ss_pred             EEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCc--------------
Q 006424          486 YVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPW--------------  551 (645)
Q Consensus       486 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~--------------  551 (645)
                      +||.++......        ......+...++.+.|++|+.++.+-+.|   +.+..|........              
T Consensus       472 yiy~Vs~~g~~y--------~r~~k~~gs~ithLDwS~Ds~~~~~~S~d---~eiLyW~~~~~~~~ts~kDvkW~t~~c~  540 (626)
T KOG2106|consen  472 YIYRVSANGRKY--------SRVGKCSGSPITHLDWSSDSQFLVSNSGD---YEILYWKPSECKQITSVKDVKWATYTCT  540 (626)
T ss_pred             EEEEECCCCcEE--------EEeeeecCceeEEeeecCCCceEEeccCc---eEEEEEccccCcccceecceeeeeeEEE
Confidence            999998653211        11111223668899999999988865544   44445533211111              


Q ss_pred             ------cCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEE
Q 006424          552 ------IRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIV  625 (645)
Q Consensus       552 ------~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iv  625 (645)
                            -..++..+..++-|.+.+++++++. .|+|+++.-+-..      ...+-.+...|......++|...|..+|.
T Consensus       541 lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd-~g~v~lf~yPc~s------~rA~~he~~ghs~~vt~V~Fl~~d~~li~  613 (626)
T KOG2106|consen  541 LGFEVFGGSDGTDINAVARSHCEKLLASGDD-FGKVHLFSYPCSS------PRAPSHEYGGHSSHVTNVAFLCKDSHLIS  613 (626)
T ss_pred             EEEEEecccCCchHHHhhhhhhhhhhhcccc-CceEEEEccccCC------CcccceeeccccceeEEEEEeeCCceEEe
Confidence                  1122334555677788889999988 8999999876541      01112222333333334667676666555


Q ss_pred             EecCCCeEeEEEe
Q 006424          626 TAGCDGMIKTFHN  638 (645)
Q Consensus       626 t~s~Dg~Iriw~~  638 (645)
                      || .|..|..|++
T Consensus       614 tg-~D~Si~qW~l  625 (626)
T KOG2106|consen  614 TG-KDTSIMQWRL  625 (626)
T ss_pred             cC-CCceEEEEEe
Confidence            55 9999999985

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=9.3e-26  Score=217.50  Aligned_cols=308  Identities=22%  Similarity=0.317  Sum_probs=229.4

Q ss_pred             hhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchh
Q 006424           96 VDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKM  175 (645)
Q Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (645)
                      +..+..|+..+..++++++..+ .-++++            ++++.+|--..-+..+..++.              + .+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~-~fsask------------~g~i~kw~v~tgk~~~~i~~~--------------~-ev  186 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKR-VFSASK------------DGTILKWDVLTGKKDRYIIER--------------D-EV  186 (479)
T ss_pred             ceeeccccCcceEEEeeccccc-eeecCC------------CcceeeeehhcCccccccccc--------------c-hh
Confidence            4456678888899999999877 666776            666666622111111111000              0 00


Q ss_pred             HhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEE
Q 006424          176 EVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK  255 (645)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (645)
                        ...     .+..+...+  ++|...|.+++.|+||+|||+|+.|..|.||+..+                        
T Consensus       187 --~k~-----~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t------------------------  233 (479)
T KOG0299|consen  187 --LKS-----HGNPLKESR--KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT------------------------  233 (479)
T ss_pred             --hhh-----ccCCCCccc--ccccceeEEEEEcCCCcEEEecCCCceEEEecCcc------------------------
Confidence              000     011111111  38999999999999999999999999999999997                        


Q ss_pred             ecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEE
Q 006424          256 FGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCV  333 (645)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l  333 (645)
                                           ...++.+.+|.+.|.+++|-.. +.+++++.|++|++|+++....+.++ +|.+.|..+
T Consensus       234 ---------------------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  234 ---------------------LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             ---------------------cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence                                 5667889999999999999865 48999999999999999887776654 799999999


Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424          334 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  413 (645)
Q Consensus       334 ~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  413 (645)
                      .... -++.+-+|+.|+++++|++.....+.+.++.+.+-|++|-. ...+++|+.+|.|.+|++...+.....-..|+.
T Consensus       293 daL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv  370 (479)
T KOG0299|consen  293 DALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV  370 (479)
T ss_pred             chhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccc
Confidence            8876 66677777799999999998888888889999999999974 568999999999999999877655443333332


Q ss_pred             ccc-----CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc---eeeEeecCCCCCeEEEEEecCCCEEEEE-eCCcc
Q 006424          414 KKT-----SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCR  484 (645)
Q Consensus       414 ~~~-----~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp~~~~l~t~-s~dg~  484 (645)
                      ...     +...|++++..|.. .++++|+.+|.|++|-+.+.   +..+....-.+.|++++|+++|+.+++| +....
T Consensus       371 ~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhR  449 (479)
T KOG0299|consen  371 IPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHR  449 (479)
T ss_pred             cCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccc
Confidence            211     12489999999985 89999999999999997754   3444444467889999999999976665 34444


Q ss_pred             EEEE
Q 006424          485 VYVW  488 (645)
Q Consensus       485 I~iw  488 (645)
                      +=-|
T Consensus       450 lGRW  453 (479)
T KOG0299|consen  450 LGRW  453 (479)
T ss_pred             ccee
Confidence            4344

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=4.8e-25  Score=210.78  Aligned_cols=272  Identities=18%  Similarity=0.279  Sum_probs=222.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      ..|+++...|..+.++||+.|..+.++|...                                             ++.+
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s---------------------------------------------~q~l  254 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPS---------------------------------------------NQIL  254 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecch---------------------------------------------hhhh
Confidence            4688999988878999999999999999886                                             6678


Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  358 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  358 (645)
                      ..+.||...|+.+.|+++. .+++++.|..|+||........... .|..+|+.+..+| .+.||++++.|++..+.|++
T Consensus       255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~  333 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDIS  333 (506)
T ss_pred             hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CCcEEEEecCCceEEEEEcc
Confidence            8999999999999999986 8899999999999998766554444 4999999999999 99999999999999999999


Q ss_pred             CCcEEEeeccC---CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          359 EKRVVDWADVR---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       359 ~~~~~~~~~~~---~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      ++..+....+.   -.+++..|+|||..|.+|+.||.+++||+.......       ....|.++|..++|+.+| ++|+
T Consensus       334 ~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a-------~Fpght~~vk~i~FsENG-Y~La  405 (506)
T KOG0289|consen  334 SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA-------KFPGHTGPVKAISFSENG-YWLA  405 (506)
T ss_pred             CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc-------cCCCCCCceeEEEeccCc-eEEE
Confidence            99988765553   358999999999999999999999999999776322       223357999999999998 9999


Q ss_pred             EEECCCeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee-c
Q 006424          436 ITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF-S  512 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~  512 (645)
                      +++.|+.|++||++..  ..++... ....+.+++|++.|.+|+.++.|=.|++++-.+..  +..       ...++ +
T Consensus       406 t~add~~V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~--W~~-------~~~~~~~  475 (506)
T KOG0289|consen  406 TAADDGSVKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS--WTE-------IKELADH  475 (506)
T ss_pred             EEecCCeEEEEEehhhcccceeecc-ccccceeEEEcCCCCeEEeecceeEEEEEeccccc--cee-------eehhhhc
Confidence            9999999999999854  3444443 23379999999999999999888777777644331  111       11111 2


Q ss_pred             CCcEEEEecCCCCccccccCCCCc
Q 006424          513 EGVSVAVQWPGIGTEQKSLCSSSL  536 (645)
Q Consensus       513 ~g~~~~v~~s~~~~~l~~~~~~~~  536 (645)
                      .|....+.|.....++++.+.|..
T Consensus       476 sg~st~v~Fg~~aq~l~s~smd~~  499 (506)
T KOG0289|consen  476 SGLSTGVRFGEHAQYLASTSMDAI  499 (506)
T ss_pred             ccccceeeecccceEEeeccchhh
Confidence            367788888888888887776644

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=2.5e-25  Score=224.26  Aligned_cols=433  Identities=17%  Similarity=0.209  Sum_probs=291.3

Q ss_pred             cccccccccCcEEEEEECCCCC---EEEEEeCCCcEEEEEcCCCceeeeEecCC-----------CCc-ccCCCCceEEe
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDD-----------GGF-GSNAKEGKIKF  256 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~---~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~  256 (645)
                      ...++.||.++|+|+.|-|+.+   ++++|+.||.|++|.++.....+......           ... ...+..+.+..
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~v  125 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSV  125 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEE
Confidence            5567899999999999999877   89999999999999998322211111110           000 00012222222


Q ss_pred             cccCCCc------------------------------------ceeecCCCceeccCCCceeeccCccCeEEEEEcCC--
Q 006424          257 GKKKSSH------------------------------------VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--  298 (645)
Q Consensus       257 ~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--  298 (645)
                      +...+..                                    ..+...... .-....+..+.||.+.|.+++|...  
T Consensus       126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~  204 (764)
T KOG1063|consen  126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGG  204 (764)
T ss_pred             eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCC
Confidence            2221111                                    000000000 0012456788999999999999742  


Q ss_pred             -C-eEEEEeCCCcEEEEecCCCe---------------------EE---E--------EecCCCcEEEEEEeeCCCCEEE
Q 006424          299 -N-YLLSCSMDKTVRMWQVGCNQ---------------------CL---N--------VFDHHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       299 -~-~l~s~s~dg~I~iwd~~~~~---------------------~~---~--------~~~~~~~v~~l~~~p~~~~~l~  344 (645)
                       . +|+|+|.|..|+||.+.-+.                     ..   .        ..+|.++|+++.|+| .+..|+
T Consensus       205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LL  283 (764)
T KOG1063|consen  205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLL  283 (764)
T ss_pred             CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhhe
Confidence             3 79999999999999863221                     11   1        015999999999999 888899


Q ss_pred             EEeCCCcEEEEeCCCCc-----EEE---eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424          345 SGSIDGKVRIWGVCEKR-----VVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  416 (645)
Q Consensus       345 s~s~dg~i~vwd~~~~~-----~~~---~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  416 (645)
                      +++.|.++.+|...+..     .++   ..+.........|+|+++.+++-+..|..++|......    .........+
T Consensus       284 SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~----~w~~~~~iSG  359 (764)
T KOG1063|consen  284 SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT----FWTQEPVISG  359 (764)
T ss_pred             ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc----ceeecccccc
Confidence            99999999999876542     112   22334558889999999999999999999999833222    1222333445


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC----cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~----~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      |...|.++.|+|.| .+|++.+.|-+-|++-..    +....-+...|...+++++|-+..-.+++|.+...+++|+...
T Consensus       360 H~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk  438 (764)
T KOG1063|consen  360 HVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK  438 (764)
T ss_pred             ccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence            67899999999998 799999999999998643    1112222344777899999988667788888899999998532


Q ss_pred             C-----------C------------cC--------CC----c---c----cC---Ccce---------------------
Q 006424          493 L-----------C------------FP--------SS----K---Q----KN---SVRS---------------------  506 (645)
Q Consensus       493 ~-----------~------------~~--------~~----~---~----~~---~~~~---------------------  506 (645)
                      .           +            .+        ..    .   .    ..   ....                     
T Consensus       439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv  518 (764)
T KOG1063|consen  439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV  518 (764)
T ss_pred             HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence            0           0            00        00    0   0    00   0000                     


Q ss_pred             eeeeecCCcEEEEecCCCCccccccCCCCcccc--Ccccccccc--CCccCCCCccccCccccCCCCCCcCCCCCCCcCC
Q 006424          507 CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDC--SQKWDNLET--APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP  582 (645)
Q Consensus       507 ~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~--~~~w~~~~~--~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~  582 (645)
                      ...+.|...+.+++-+|++..+++++.......  +.+|....-  ...+.+|+--++.++|||||++|++++. |++..
T Consensus       519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR-DRt~s  597 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR-DRTVS  597 (764)
T ss_pred             HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec-CceEE
Confidence            011334556889999999999998888766544  455655222  2257888889999999999999999999 99999


Q ss_pred             CCCCccCCCCCcCChhhhHhhhhhccCCCCC---ccCC-CCcceEEEEecCCCeEeEEEecCcc
Q 006424          583 LWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV---RAIS-ATWGLVIVTAGCDGMIKTFHNYGLP  642 (645)
Q Consensus       583 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~d~~~ivt~s~Dg~Iriw~~~g~~  642 (645)
                      +|+......          ....+.....|.   .+++ .+|+..+||||+|.+|++|.....|
T Consensus       598 l~~~~~~~~----------~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~  651 (764)
T KOG1063|consen  598 LYEVQEDIK----------DEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR  651 (764)
T ss_pred             eeeeecccc----------hhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence            999876631          222233333443   3332 4478889999999999999977654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=2.9e-25  Score=235.60  Aligned_cols=295  Identities=20%  Similarity=0.250  Sum_probs=224.8

Q ss_pred             cccCcEEEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          198 AHKGCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      .+...|.++..+|||..+|||+  .||.++||+.+......                                  ..++.
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~----------------------------------~~~~~   56 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK----------------------------------EEKNE   56 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchh----------------------------------hhhhc
Confidence            4556799999999999999999  89999999976521000                                  00000


Q ss_pred             -cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC------------------CeEEEEe-cCCCcEEEEE
Q 006424          276 -EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------------------NQCLNVF-DHHNYVTCVQ  334 (645)
Q Consensus       276 -~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~------------------~~~~~~~-~~~~~v~~l~  334 (645)
                       -.+.+.....|.+.|+|+.|++|| +||+||.|+.|.||....                  .+++..+ +|...|..++
T Consensus        57 ~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~  136 (942)
T KOG0973|consen   57 NLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN  136 (942)
T ss_pred             ccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceec
Confidence             145567778899999999999998 999999999999998762                  1233344 5999999999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424          335 FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  413 (645)
Q Consensus       335 ~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  413 (645)
                      |+| ++.++++++.|++|.+|+.++.+... +.+|.+.|..+.|.|-|++||+-+.|++|++|.+.+...... +.-+-.
T Consensus       137 Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~-It~pf~  214 (942)
T KOG0973|consen  137 WSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS-ITKPFE  214 (942)
T ss_pred             cCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEe-eccchh
Confidence            999 99999999999999999999876554 789999999999999999999999999999999776443322 222222


Q ss_pred             cccCCCCeEEEEEcCCCCcEEEEEEC----CCeEEEEECCcceeeEeecCCCCCeEEEEEecC-----CC----------
Q 006424          414 KKTSGNKITGIQFSRDESQRIMITSE----DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-----GK----------  474 (645)
Q Consensus       414 ~~~~~~~i~~i~~s~~g~~~l~~~s~----dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~-----~~----------  474 (645)
                      .......+..+.|+||| .+|++...    -.++.|.+-.+........+|.+++.++.|+|.     .+          
T Consensus       215 ~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  215 ESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             hCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence            22234668899999998 78887633    357888886655545555668999999999882     11          


Q ss_pred             --EEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccc
Q 006424          475 --HIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRD  538 (645)
Q Consensus       475 --~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~  538 (645)
                        .+|+||.|++|.||...........+.-         .+..++.++|+|||..|+.++-|+...
T Consensus       294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l---------f~~SI~DmsWspdG~~LfacS~DGtV~  350 (942)
T KOG0973|consen  294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNL---------FNKSIVDMSWSPDGFSLFACSLDGTVA  350 (942)
T ss_pred             eEEEEEecCCccEEEEecCCCCchhhhhhh---------hcCceeeeeEcCCCCeEEEEecCCeEE
Confidence              6789999999999998655332222111         234578999999999999887776533

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.3e-25  Score=204.55  Aligned_cols=278  Identities=17%  Similarity=0.288  Sum_probs=224.3

Q ss_pred             ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      .+.+.+.|.||.+.|+.++-......+.+++.|.+.+||.+++                                     
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-------------------------------------  179 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-------------------------------------  179 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-------------------------------------
Confidence            4567788999999999999988788999999999999999998                                     


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEec------CC------------------------
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV------GC------------------------  317 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~------~~------------------------  317 (645)
                              +.++..+.||.+.|+++.|++.+ ++++++.|++..||..      ..                        
T Consensus       180 --------g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d  251 (481)
T KOG0300|consen  180 --------GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD  251 (481)
T ss_pred             --------ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence                    56678899999999999999988 7889999999999961      10                        


Q ss_pred             ------C----eEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEE
Q 006424          318 ------N----QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFI  385 (645)
Q Consensus       318 ------~----~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~  385 (645)
                            +    .++..+ +|...|.+..|.. .++.+++++.|.+..+||+++++++. +.+|....+.++-+|..++++
T Consensus       252 ~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVv  330 (481)
T KOG0300|consen  252 SSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVV  330 (481)
T ss_pred             cccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEE
Confidence                  0    112222 4888899999998 89999999999999999999999887 678999999999999999999


Q ss_pred             EEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeE
Q 006424          386 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM  465 (645)
Q Consensus       386 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~  465 (645)
                      +++.|.+.++||++..-.....  ++    +|...|+++.|..+  ..+++|+.|.+|++||+++....+.......+++
T Consensus       331 TsSrDtTFRLWDFReaI~sV~V--FQ----GHtdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N  402 (481)
T KOG0300|consen  331 TSSRDTTFRLWDFREAIQSVAV--FQ----GHTDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN  402 (481)
T ss_pred             EeccCceeEeccchhhcceeee--ec----ccccceeEEEEecC--CceeecCCCceEEEeeeccccCcceeeecCCccc
Confidence            9999999999999944332222  23    34689999999998  4899999999999999886655554444677899


Q ss_pred             EEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc
Q 006424          466 SASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT  526 (645)
Q Consensus       466 ~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~  526 (645)
                      .++.+..++.|+.--++..|++||++...........      .-.+...+...+|..+..
T Consensus       403 Rvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrts------RqgHrRMV~c~AW~eehp  457 (481)
T KOG0300|consen  403 RVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTS------RQGHRRMVTCCAWLEEHP  457 (481)
T ss_pred             eeEeecCCceEEeccCCceEEEEecCCCccccCCccc------ccccceeeeeeeccccCc
Confidence            9999988889999999999999999876432221110      111234466778876544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=224.07  Aligned_cols=247  Identities=20%  Similarity=0.399  Sum_probs=202.5

Q ss_pred             ccCcEE---EEEEC-CCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          199 HKGCIW---TLKFS-PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       199 H~~~V~---~l~fs-pdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      |...|.   .+..+ |.++||.|||.||.|++|++.......                                      
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~--------------------------------------   61 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP--------------------------------------   61 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc--------------------------------------
Confidence            444454   44554 467799999999999999987521000                                      


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC--eEEEEec-CCCcEEEEEE-eeCCCCEEEEEeCC
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVFD-HHNYVTCVQF-NPIDDNYFISGSID  349 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~--~~~~~~~-~~~~v~~l~~-~p~~~~~l~s~s~d  349 (645)
                       .......++.|...|+++....++ .|+++|.|-+|++|+...+  -+..+++ |.+.|.|+++ .+ +...+|+|+.|
T Consensus        62 -s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD  139 (735)
T KOG0308|consen   62 -STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLD  139 (735)
T ss_pred             -ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCC
Confidence             012356788899999999988777 8999999999999999876  4566665 9999999999 55 88899999999


Q ss_pred             CcEEEEeCCCCcE--E---------Eee-ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424          350 GKVRIWGVCEKRV--V---------DWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  417 (645)
Q Consensus       350 g~i~vwd~~~~~~--~---------~~~-~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  417 (645)
                      +.|.+||+.++..  +         .+. ++...|++++.++.|..++.|+..+.+++||.++......   +.    +|
T Consensus       140 ~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk---Lr----GH  212 (735)
T KOG0308|consen  140 RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK---LR----GH  212 (735)
T ss_pred             ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee---ee----cc
Confidence            9999999997622  1         122 6788999999999999999999999999999998775433   23    34


Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ...|..+..++|| ..+++++.||+|++||++..........|...|.++..+|+-.++++|+.||.|+.=|+.+.
T Consensus       213 TdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  213 TDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ccceEEEEEcCCC-CeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            6889999999998 89999999999999999866555556668888999999999999999999999999999875

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=4.9e-25  Score=210.68  Aligned_cols=251  Identities=18%  Similarity=0.284  Sum_probs=213.1

Q ss_pred             ccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424          187 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  266 (645)
Q Consensus       187 ~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (645)
                      .+......+|+||...|+.+.|+|+...+++++.|..|+||....                                   
T Consensus       248 ~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-----------------------------------  292 (506)
T KOG0289|consen  248 KPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-----------------------------------  292 (506)
T ss_pred             cchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-----------------------------------
Confidence            345567888999999999999999999999999999999999875                                   


Q ss_pred             ecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCC---CcEEEEEEeeCCCCE
Q 006424          267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPIDDNY  342 (645)
Q Consensus       267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~---~~v~~l~~~p~~~~~  342 (645)
                                .........|.++|+.+..+|.| ||++++.|++..+.|++++..+....+.   -.+++.+|+| ||.+
T Consensus       293 ----------~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLi  361 (506)
T KOG0289|consen  293 ----------SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLI  361 (506)
T ss_pred             ----------ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceE
Confidence                      23345667899999999999998 9999999999999999999998877654   3589999999 9999


Q ss_pred             EEEEeCCCcEEEEeCCCCcE-EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424          343 FISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  421 (645)
Q Consensus       343 l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  421 (645)
                      |.+|..||.|++||+.++.. -.+.+|.++|.+++|+.+|.+|++++.|+.|++||++.... ...+.....     ..+
T Consensus       362 fgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-~kt~~l~~~-----~~v  435 (506)
T KOG0289|consen  362 FGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-FKTIQLDEK-----KEV  435 (506)
T ss_pred             EeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-cceeecccc-----ccc
Confidence            99999999999999988664 45889999999999999999999999999999999997653 334444332     479


Q ss_pred             EEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          422 TGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      .++.|.+.| .+|+.++.|=+|++++-.  +.........|.+..+++.|....++++++|.|..++++.+
T Consensus       436 ~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  436 NSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            999999998 899999888888888732  33333444557788999999999999999999999888764

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.4e-24  Score=214.51  Aligned_cols=250  Identities=15%  Similarity=0.256  Sum_probs=202.8

Q ss_pred             ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      .--..+|++|+|+.+.+.||.+-.||.|-||++...                                            
T Consensus        22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--------------------------------------------   57 (691)
T KOG2048|consen   22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--------------------------------------------   57 (691)
T ss_pred             eeeccceEEEEEeccCCceeeeccCCcEEEEccCCC--------------------------------------------
Confidence            334578999999999999999999999999999872                                            


Q ss_pred             CCCceeeccC-ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          277 ESPLQELHGH-KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       277 ~~~~~~l~~h-~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      .-....+.|+ ...|-+++|++.++|++.+.+|.|.-||+.+++....+. ..+.|++++.+| .+..++.|+.||.++.
T Consensus        58 w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~  136 (691)
T KOG2048|consen   58 WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYD  136 (691)
T ss_pred             ceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEE
Confidence            2234455555 468999999988899999999999999999999988886 667999999999 8899999999998888


Q ss_pred             EeCCCCcEEE---eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-EEeeccccccCCCCeEEEEEcCCC
Q 006424          355 WGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       355 wd~~~~~~~~---~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      ++...+.+..   +....+.+.+++|+|++..++.|+.||.|++||......... ...+.........-|.++.|-.++
T Consensus       137 ~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~  216 (691)
T KOG2048|consen  137 FSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS  216 (691)
T ss_pred             EecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC
Confidence            8887777654   344568899999999999999999999999999987765431 111222222233557788888775


Q ss_pred             CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          431 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                        .+++|...|.|.+||.......-....|...|.+++.++++.+++++|.|+.|.-|...+.
T Consensus       217 --tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  217 --TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             --cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence              8999999999999997643333333348889999999999999999999999998887765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=2.1e-25  Score=236.70  Aligned_cols=267  Identities=23%  Similarity=0.391  Sum_probs=204.1

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      +.-++..|.+.|+|+.|+|||+|||+||+|+.|.||..... .....+.      ........                 
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~-~~~~~fg------s~g~~~~v-----------------  116 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI-GSGTVFG------STGGAKNV-----------------  116 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc-CCccccc------cccccccc-----------------
Confidence            34556789999999999999999999999999999998741 0000000      00000000                 


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                         -..+.+..+.+|...|.+++|+|++ +|++++.|++|.+||..+.+.+..+. |.+.|..+.|.| -|++|++-+.|
T Consensus       117 ---E~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdD  192 (942)
T KOG0973|consen  117 ---ESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDD  192 (942)
T ss_pred             ---ceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCC
Confidence               0135677889999999999999987 99999999999999999998888885 999999999999 99999999999


Q ss_pred             CcEEEEeCCCCcEEE-e------eccCCCeEEEEEccCCCEEEEEec----CCeEEEEEecCCceeeeEEeeccccccCC
Q 006424          350 GKVRIWGVCEKRVVD-W------ADVRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSG  418 (645)
Q Consensus       350 g~i~vwd~~~~~~~~-~------~~~~~~v~~l~~sp~g~~l~~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  418 (645)
                      ++|++|++.+-.+.. +      ......+..+.|+|||++|++...    ...+.|.+-.+......   +.+    |.
T Consensus       193 rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~---LvG----H~  265 (942)
T KOG0973|consen  193 RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKD---LVG----HS  265 (942)
T ss_pred             ceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeee---eec----CC
Confidence            999999976633322 1      123446888999999999998642    23566776655443322   233    45


Q ss_pred             CCeEEEEEcCC--------CC--------cEEEEEECCCeEEEEECCcceeeEeec-CCCCCeEEEEEecCCCEEEEEeC
Q 006424          419 NKITGIQFSRD--------ES--------QRIMITSEDSKLRILDGVDVIHKFKGL-PKSGSQMSASFTTTGKHIISIGD  481 (645)
Q Consensus       419 ~~i~~i~~s~~--------g~--------~~l~~~s~dg~I~iwd~~~~~~~~~~~-~~~~~i~~v~~sp~~~~l~t~s~  481 (645)
                      .++.++.|+|.        |.        ..+|+|+.|++|-||........+..+ -....|..++|+|||..|+.+|.
T Consensus       266 ~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~  345 (942)
T KOG0973|consen  266 APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSL  345 (942)
T ss_pred             CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEec
Confidence            79999999983        11        168899999999999976544444332 24668999999999999999999


Q ss_pred             CccEEEEeCCCC
Q 006424          482 DCRVYVWNYDEL  493 (645)
Q Consensus       482 dg~I~iwd~~~~  493 (645)
                      ||+|.+..++..
T Consensus       346 DGtV~~i~Fee~  357 (942)
T KOG0973|consen  346 DGTVALIHFEEK  357 (942)
T ss_pred             CCeEEEEEcchH
Confidence            999999998764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=2.1e-25  Score=215.29  Aligned_cols=255  Identities=20%  Similarity=0.334  Sum_probs=204.8

Q ss_pred             cccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          198 AHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      -|.+.|+.+.+-|... .+|+++..+.|.|||............                                   +
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-----------------------------------~  166 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-----------------------------------E  166 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-----------------------------------c
Confidence            4999999999999654 778888999999999876321110000                                   1


Q ss_pred             CCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeE-------EEEe-cCCCcEEEEEEeeCCCCEEEEE
Q 006424          277 ESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC-------LNVF-DHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~-------~~~~-~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                      ..+-..+.||...-++++|++.  +.|++++.|++|++||+.....       ...+ +|...|..++|+|.+.++|+++
T Consensus       167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv  246 (422)
T KOG0264|consen  167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV  246 (422)
T ss_pred             CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee
Confidence            3455688899998999999975  5999999999999999964322       2223 4999999999999889999999


Q ss_pred             eCCCcEEEEeCCCC--cE-EEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424          347 SIDGKVRIWGVCEK--RV-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       347 s~dg~i~vwd~~~~--~~-~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      +.|+.+.|||+|++  +. .....|...++|++|+| ++..||+|+.|++|.+||+++...+...+.      .|...|.
T Consensus       247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e------~H~dev~  320 (422)
T KOG0264|consen  247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE------GHEDEVF  320 (422)
T ss_pred             cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc------CCCcceE
Confidence            99999999999953  22 33677899999999999 566889999999999999998876544332      3458999


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEECCcce--------------eeEeecCCCCCeEEEEEecCCCE-EEEEeCCccEEE
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILDGVDVI--------------HKFKGLPKSGSQMSASFTTTGKH-IISIGDDCRVYV  487 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--------------~~~~~~~~~~~i~~v~~sp~~~~-l~t~s~dg~I~i  487 (645)
                      ++.|+|.....|++++.|+.+.|||+...-              ..|...+|...|..+.|+|+..+ |++.++|+.+.|
T Consensus       321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI  400 (422)
T KOG0264|consen  321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI  400 (422)
T ss_pred             EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence            999999988899999999999999965321              22555668999999999998765 667889999999


Q ss_pred             EeCCCC
Q 006424          488 WNYDEL  493 (645)
Q Consensus       488 wd~~~~  493 (645)
                      |.+...
T Consensus       401 W~~s~~  406 (422)
T KOG0264|consen  401 WQMAEN  406 (422)
T ss_pred             eecccc
Confidence            998754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4e-25  Score=223.47  Aligned_cols=240  Identities=22%  Similarity=0.363  Sum_probs=202.6

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      +...|+++.|+++|.+||.|..+|.|.|||..+                                             .+
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~---------------------------------------------~k  250 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE---------------------------------------------QK  250 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhh---------------------------------------------cc
Confidence            478999999999999999999999999999986                                             45


Q ss_pred             Cceeecc-CccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEE-e-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          279 PLQELHG-HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       279 ~~~~l~~-h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~-~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      .+..+.+ |...|-+++|. ...+.+|+.|+.|..+|++..+.... + .|...|..++|++ +++++|+|+.|+.+.||
T Consensus       251 ~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iw  328 (484)
T KOG0305|consen  251 KTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIW  328 (484)
T ss_pred             ccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEec
Confidence            5667777 99999999998 45889999999999999987766544 4 4899999999999 99999999999999999


Q ss_pred             eCCC-CcEEEeeccCCCeEEEEEcc-CCCEEEEE--ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424          356 GVCE-KRVVDWADVRDVISAICYIP-DGKGFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       356 d~~~-~~~~~~~~~~~~v~~l~~sp-~g~~l~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                      |... .....+..|...|.+++|+| ....||+|  +.|+.|++||..++..... +  .     .+..|.++.|++...
T Consensus       329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~-v--d-----tgsQVcsL~Wsk~~k  400 (484)
T KOG0305|consen  329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS-V--D-----TGSQVCSLIWSKKYK  400 (484)
T ss_pred             cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc-c--c-----cCCceeeEEEcCCCC
Confidence            9965 44567899999999999999 55678875  5699999999997765322 1  1     147899999999974


Q ss_pred             cEEEE-EECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          432 QRIMI-TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       432 ~~l~~-~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .++.+ |..++.|.||+............|...|..++++|||..+++|+.|.++++|++-+.
T Consensus       401 Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  401 ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            44444 344689999998766555555669999999999999999999999999999998764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.4e-25  Score=205.93  Aligned_cols=282  Identities=17%  Similarity=0.300  Sum_probs=212.1

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccC---CCCceEEecc--cCCCccee
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN---AKEGKIKFGK--KKSSHVPV  266 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~  266 (645)
                      +..++.||.+.|+|+.|++.+.++++++.|++..||...-.-.......+.+.....   ..+....+..  .....-. 
T Consensus       182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t-  260 (481)
T KOG0300|consen  182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT-  260 (481)
T ss_pred             ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce-
Confidence            455688999999999999999999999999999999732111000000000000000   0000000000  0000000 


Q ss_pred             ecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEE
Q 006424          267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~  344 (645)
                               -..++..+.||.+.|.+..|-..+ .+++++.|.+..+||++++.++..+ +|....+.++-+| ..++++
T Consensus       261 ---------iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVv  330 (481)
T KOG0300|consen  261 ---------IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVV  330 (481)
T ss_pred             ---------eeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEE
Confidence                     034678899999999999998776 8999999999999999999999988 5889999999999 889999


Q ss_pred             EEeCCCcEEEEeCCCC--cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424          345 SGSIDGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       345 s~s~dg~i~vwd~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      +++.|.+.++||++..  .+-.+.+|.+.|++..|.-+ ..+++|+.|.+|++||+++...++..+...       .+++
T Consensus       331 TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtd-------S~~N  402 (481)
T KOG0300|consen  331 TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTD-------SPAN  402 (481)
T ss_pred             EeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecC-------Cccc
Confidence            9999999999999853  23458899999999999865 468899999999999999998887766544       6788


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEECCc-ceeeE---eecCCCCCeEEEEEecCC--CEEEEEeCCccEEEEeCCCC
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILDGVD-VIHKF---KGLPKSGSQMSASFTTTG--KHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~---~~~~~~~~i~~v~~sp~~--~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .++.+..+ ..++.--.+..|++||+.. .+..+   ....|..-|++++|..+-  .-|++++-|..+.=|+++..
T Consensus       403 Rvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  403 RVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             eeEeecCC-ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            99999876 6888888889999999762 22222   234578889999997543  45889999999999998764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7.5e-25  Score=212.93  Aligned_cols=272  Identities=15%  Similarity=0.212  Sum_probs=213.8

Q ss_pred             ccCcEEEEEECCCCCE-EEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          199 HKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       199 H~~~V~~l~fspdg~~-L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      ..+.|.+++|||...+ +|+++ .-.+.||+..+                                             .
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~---------------------------------------------~   58 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVT---------------------------------------------R   58 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecch---------------------------------------------h
Confidence            4467999999996553 33333 33599998876                                             3


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      .....+......|.+++|..|| +|++|+..|.|+|+|+.+...+..+ .|..++..+.|+|.++..+++|++|+.+++|
T Consensus        59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~  138 (487)
T KOG0310|consen   59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYW  138 (487)
T ss_pred             hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEE
Confidence            4455666778899999999998 7778888999999997765566666 4999999999999888889999999999999


Q ss_pred             eCCCCcEE-EeeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424          356 GVCEKRVV-DWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  433 (645)
Q Consensus       356 d~~~~~~~-~~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~  433 (645)
                      |+.+.... .+.+|.+.|.|.+|+|. +..+++|+.||.|++||++........+.       |+.+|-++.+-|.| ..
T Consensus       139 d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-------hg~pVe~vl~lpsg-s~  210 (487)
T KOG0310|consen  139 DLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-------HGCPVESVLALPSG-SL  210 (487)
T ss_pred             EcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-------CCCceeeEEEcCCC-CE
Confidence            99998764 58899999999999995 45889999999999999998753333222       35899999999997 56


Q ss_pred             EEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeec
Q 006424          434 IMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFS  512 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  512 (645)
                      +++++ ...|+|||+....+... ...|...|+|+.+..++..|++||-|+.|++||+.+-+.           ...+.-
T Consensus       211 iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv-----------v~s~~~  278 (487)
T KOG0310|consen  211 IASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV-----------VHSWKY  278 (487)
T ss_pred             EEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE-----------EEeeec
Confidence            66665 56899999874433333 344899999999999999999999999999999766521           112334


Q ss_pred             CCcEEEEecCCCCccccccCCCCc
Q 006424          513 EGVSVAVQWPGIGTEQKSLCSSSL  536 (645)
Q Consensus       513 ~g~~~~v~~s~~~~~l~~~~~~~~  536 (645)
                      .++++.++-+|++..++..-++++
T Consensus       279 ~~pvLsiavs~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  279 PGPVLSIAVSPDDQTVVIGMSNGL  302 (487)
T ss_pred             ccceeeEEecCCCceEEEecccce
Confidence            577888888888887776555544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=9e-25  Score=229.67  Aligned_cols=246  Identities=22%  Similarity=0.390  Sum_probs=204.0

Q ss_pred             ccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424          187 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  266 (645)
Q Consensus       187 ~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (645)
                      .+...+...|.||.+.|++++|..-+.+|++|+.|+++++||..+                                   
T Consensus       236 ~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-----------------------------------  280 (537)
T KOG0274|consen  236 NNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-----------------------------------  280 (537)
T ss_pred             ccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-----------------------------------
Confidence            344545555999999999999987788999999999999999887                                   


Q ss_pred             ecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEE
Q 006424          267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s  345 (645)
                                +.....+.||.+.|.++...+ ..+++|+.|.+|++|++.++.++..+. |..+|+++..   ++.++++
T Consensus       281 ----------g~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~---~~~~lvs  346 (537)
T KOG0274|consen  281 ----------GECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL---DEPLLVS  346 (537)
T ss_pred             ----------CcEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe---cCCEEEE
Confidence                      566789999999999998653 478889999999999999999999998 9999999999   5789999


Q ss_pred             EeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC-ceeeeEEeeccccccCCCCeEE
Q 006424          346 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDRKKTSGNKITG  423 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~i~~  423 (645)
                      |+.|++|++||+.+++++. +.+|...|.++.+.+. ..+++|+.|+.|++||+++. +...       ....|...+.+
T Consensus       347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~-------tl~~h~~~v~~  418 (537)
T KOG0274|consen  347 GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH-------TLQGHTSLVSS  418 (537)
T ss_pred             EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh-------hhcCCcccccc
Confidence            9999999999999988776 7889999999988765 89999999999999999988 3321       12223455555


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecC-CCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          424 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~-~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      +.+.  + ++|++++.|++|++||..+......... +.+.|..+++.  ...+++++.||.+++||++++.
T Consensus       419 l~~~--~-~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  419 LLLR--D-NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             cccc--c-ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence            5543  3 6899999999999999775443333333 56788888775  5788899999999999999884

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.1e-25  Score=198.16  Aligned_cols=249  Identities=21%  Similarity=0.338  Sum_probs=200.4

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      -..|.+.|..+...--|+.|||++.|++|+|+.+.+...                                         
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-----------------------------------------   45 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-----------------------------------------   45 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----------------------------------------
Confidence            357999999999888899999999999999999987311                                         


Q ss_pred             cCCCceeeccCccCeEEEEEcC-C-C-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCC-CCEEEEEeC
Q 006424          276 EESPLQELHGHKGDVLDLAWSN-S-N-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPID-DNYFISGSI  348 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~-~-~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~-~~~l~s~s~  348 (645)
                       .+.+.+|.||.++|+.++|.. . | .|++|++||.|.||.-+.++-.+..   .|...|++++|.|.+ +-.|++++.
T Consensus        46 -s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS  124 (299)
T KOG1332|consen   46 -SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS  124 (299)
T ss_pred             -ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeC
Confidence             256789999999999999974 3 4 8999999999999999888654444   388999999999943 346899999


Q ss_pred             CCcEEEEeCCCC-c---EEEeeccCCCeEEEEEccC---C-----------CEEEEEecCCeEEEEEecCCceeeeEEee
Q 006424          349 DGKVRIWGVCEK-R---VVDWADVRDVISAICYIPD---G-----------KGFIVGSITGTCHFYKASGNDLKLEKVDF  410 (645)
Q Consensus       349 dg~i~vwd~~~~-~---~~~~~~~~~~v~~l~~sp~---g-----------~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  410 (645)
                      ||.|.|.+.+.. .   ......|.-.|++++|.|.   |           +.|++|+.|..|+||+........+    
T Consensus       125 DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e----  200 (299)
T KOG1332|consen  125 DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE----  200 (299)
T ss_pred             CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh----
Confidence            999999998764 2   2225678889999999995   4           6799999999999999988754332    


Q ss_pred             ccccccCCCCeEEEEEcCCC---CcEEEEEECCCeEEEEECCcceeeE---eecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424          411 HDRKKTSGNKITGIQFSRDE---SQRIMITSEDSKLRILDGVDVIHKF---KGLPKSGSQMSASFTTTGKHIISIGDDCR  484 (645)
Q Consensus       411 ~~~~~~~~~~i~~i~~s~~g---~~~l~~~s~dg~I~iwd~~~~~~~~---~~~~~~~~i~~v~~sp~~~~l~t~s~dg~  484 (645)
                       .....|.+.|+.++|.|.-   ...++++++||+|.||..+......   ..+.....+..+.||+.|+.|+.++.|..
T Consensus       201 -~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk  279 (299)
T KOG1332|consen  201 -RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK  279 (299)
T ss_pred             -hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcE
Confidence             2244567899999999963   3689999999999999865221111   12235668999999999999999999999


Q ss_pred             EEEEeCC
Q 006424          485 VYVWNYD  491 (645)
Q Consensus       485 I~iwd~~  491 (645)
                      |.+|.-+
T Consensus       280 vtlwke~  286 (299)
T KOG1332|consen  280 VTLWKEN  286 (299)
T ss_pred             EEEEEeC
Confidence            9999744

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=4.3e-26  Score=209.81  Aligned_cols=242  Identities=23%  Similarity=0.383  Sum_probs=203.8

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      |--|.++|.|+.||.|...||+|+.||.|++|.+.+                                            
T Consensus       259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t--------------------------------------------  294 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET--------------------------------------------  294 (508)
T ss_pred             eeecccceEEEeecccHHHhhccCcCCcEEEEEEec--------------------------------------------
Confidence            445889999999999999999999999999999998                                            


Q ss_pred             cCCCceeec-cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424          276 EESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV  352 (645)
Q Consensus       276 ~~~~~~~l~-~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i  352 (645)
                       +.+++.+. .|+..|+|+.|+.|+ .+++++.|.++++.-+.+|++++.|. |.+.|+...|.+ +|+.+++++.||+|
T Consensus       295 -G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtv  372 (508)
T KOG0275|consen  295 -GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTV  372 (508)
T ss_pred             -chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccE
Confidence             44566665 899999999999887 89999999999999999999999985 999999999999 99999999999999


Q ss_pred             EEEeCCCCcEEEe---eccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          353 RIWGVCEKRVVDW---ADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       353 ~vwd~~~~~~~~~---~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      ++|+..+.++...   .+...+|+++..-|. -..++++...+++++.++.+.-...    +.... ..++...+...+|
T Consensus       373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs----fsSGk-REgGdFi~~~lSp  447 (508)
T KOG0275|consen  373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS----FSSGK-REGGDFINAILSP  447 (508)
T ss_pred             EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee----eccCC-ccCCceEEEEecC
Confidence            9999999887753   345567888888784 4588999999999999987653322    11111 1245667778999


Q ss_pred             CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          429 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                      .| .++++.++|+.++.+........-....|...+.+++-+|..+.||+-++||.+++|.
T Consensus       448 kG-ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  448 KG-EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CC-cEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            98 8999999999999999764433333344888899999999999999999999999994

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.1e-23  Score=184.82  Aligned_cols=248  Identities=21%  Similarity=0.367  Sum_probs=199.7

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      +.-+.|.+.|.|.+|||+|++||+|+.|++|++.......+..                                     
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~-------------------------------------  125 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA-------------------------------------  125 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccc-------------------------------------
Confidence            3456799999999999999999999999999998766522111                                     


Q ss_pred             eccCCCceeeccCccCeEEEEEcCC----C-eEEEEe-CCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEE
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNS----N-YLLSCS-MDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~----~-~l~s~s-~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                         ...-..+.-|.+.|..++|..+    + .|++++ .|..|++-|...|+....+ +|.+.|.++- +- ++-++++|
T Consensus       126 ---~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-sw-n~~m~~sg  200 (350)
T KOG0641|consen  126 ---TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SW-NGAMFASG  200 (350)
T ss_pred             ---cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Ee-cCcEEEcc
Confidence               1223466779999999999632    3 566554 4677888899999988887 4888888763 22 68899999


Q ss_pred             eCCCcEEEEeCCCCcEEEeecc--------CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424          347 SIDGKVRIWGVCEKRVVDWADV--------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  418 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~~~~~--------~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  418 (645)
                      +.|.+|++||++-..++...+.        .+.|.+++..|.|++|++|-.|..+.+||++++.....   ++    .|.
T Consensus       201 sqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~---f~----phs  273 (350)
T KOG0641|consen  201 SQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR---FH----PHS  273 (350)
T ss_pred             CCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee---eC----CCc
Confidence            9999999999998887764321        25799999999999999999999999999999876433   22    245


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCeEEEEECC----cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          419 NKITGIQFSRDESQRIMITSEDSKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~----~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      ..|.|+.|+|.. .++++++.|..|++-|+.    ..........|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus       274 adir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  274 ADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             cceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            889999999986 899999999999999976    233344445688899999999999999999999999999875

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=7.2e-24  Score=222.89  Aligned_cols=240  Identities=19%  Similarity=0.346  Sum_probs=202.2

Q ss_pred             cccc-ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          195 EIQA-HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       195 ~l~~-H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      .+.+ |...|.+..|+  +.++++++.|++|++||..+                                          
T Consensus       202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~------------------------------------------  237 (537)
T KOG0274|consen  202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN------------------------------------------  237 (537)
T ss_pred             eecccCcchhhhheee--cCeEEecCCCceeEEeeccc------------------------------------------
Confidence            3443 66789999998  55899999999999999987                                          


Q ss_pred             eccCCCcee-eccCccCeEEEEEcC-CCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          274 QIEESPLQE-LHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       274 ~~~~~~~~~-l~~h~~~V~~l~~s~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                         +..+.. +.||.+.|+++++.. +++|++|+.|.++++||..+|++...+. |.+.|.++..   .+..+++|+.|.
T Consensus       238 ---~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~---~~~~~~sgs~D~  311 (537)
T KOG0274|consen  238 ---GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI---DPFLLVSGSRDN  311 (537)
T ss_pred             ---ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc---cCceEeeccCCc
Confidence               333444 899999999999976 4599999999999999999999999996 9999999988   457889999999


Q ss_pred             cEEEEeCCCCcEEEeec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          351 KVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      +|++|++.++..+.+.. |..+|+++..+  +.++++|+.||+|.+||+.+.+....       ...|...|.++.+.+.
T Consensus       312 tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s-------l~gH~~~V~sl~~~~~  382 (537)
T KOG0274|consen  312 TVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS-------LSGHTGRVYSLIVDSE  382 (537)
T ss_pred             eEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee-------ecCCcceEEEEEecCc
Confidence            99999999999988776 99999999987  88999999999999999996665322       2235689999988875


Q ss_pred             CCcEEEEEECCCeEEEEECCcc-eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424          430 ESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  497 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~  497 (645)
                        ..+++|+.|+.|++||++.. ........|...+..+.+  .+++|++++.|++|++||..+++...
T Consensus       383 --~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~  447 (537)
T KOG0274|consen  383 --NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLR  447 (537)
T ss_pred             --ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceee
Confidence              58999999999999998866 444555557777766554  68899999999999999999886443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.2e-24  Score=219.92  Aligned_cols=276  Identities=19%  Similarity=0.297  Sum_probs=214.8

Q ss_pred             eEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecC-CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eec
Q 006424          290 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD  367 (645)
Q Consensus       290 V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~  367 (645)
                      ..-+.|+..+.|+.|. ...|++|+..++........ ...|+++.|++ +|.+|++|..+|.|.|||....+... +..
T Consensus       180 ~nlldWss~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~  257 (484)
T KOG0305|consen  180 LNLLDWSSANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRG  257 (484)
T ss_pred             hhHhhcccCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccC
Confidence            3446777666555554 46899999999987766653 88999999999 99999999999999999987755444 555


Q ss_pred             -cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424          368 -VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  446 (645)
Q Consensus       368 -~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw  446 (645)
                       |...|.+++|+  +..+.+|+.+|.|..+|++........      ...|...|..+.|++++ .++++|+.|+.+.||
T Consensus       258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~------~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iw  328 (484)
T KOG0305|consen  258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST------LQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIW  328 (484)
T ss_pred             CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh------hhcccceeeeeEECCCC-CeeccCCCccceEec
Confidence             89999999998  678999999999999999977654331      33356889999999998 899999999999999


Q ss_pred             ECCcceeeEeecCCCCCeEEEEEecC-CCEEEEEe--CCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCC
Q 006424          447 DGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG  523 (645)
Q Consensus       447 d~~~~~~~~~~~~~~~~i~~v~~sp~-~~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~  523 (645)
                      |.......+....|...|..++|+|- ...||+|+  .|++|++||..++.....           ....+.+..+.|++
T Consensus       329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~-----------vdtgsQVcsL~Wsk  397 (484)
T KOG0305|consen  329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS-----------VDTGSQVCSLIWSK  397 (484)
T ss_pred             cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc-----------cccCCceeeEEEcC
Confidence            98766666777779999999999994 67888875  699999999997743222           12245678888988


Q ss_pred             CCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhh
Q 006424          524 IGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQ  603 (645)
Q Consensus       524 ~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~  603 (645)
                      ....+++..+                                          .++..|.+|+.++.           ...
T Consensus       398 ~~kEi~sthG------------------------------------------~s~n~i~lw~~ps~-----------~~~  424 (484)
T KOG0305|consen  398 KYKELLSTHG------------------------------------------YSENQITLWKYPSM-----------KLV  424 (484)
T ss_pred             CCCEEEEecC------------------------------------------CCCCcEEEEecccc-----------cee
Confidence            8866664333                                          11446888988776           223


Q ss_pred             hhhccCCCCC--ccCCCCcceEEEEecCCCeEeEEEecCc
Q 006424          604 QQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYGL  641 (645)
Q Consensus       604 ~~~~~~~~~~--~~~~~~d~~~ivt~s~Dg~Iriw~~~g~  641 (645)
                      .....|...+  .+.+| ||..||||+.|.++|+|+.|+.
T Consensus       425 ~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  425 AELLGHTSRVLYLALSP-DGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eeecCCcceeEEEEECC-CCCEEEEecccCcEEeccccCC
Confidence            3344444444  34445 8999999999999999999983

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.6e-25  Score=209.35  Aligned_cols=285  Identities=15%  Similarity=0.205  Sum_probs=209.9

Q ss_pred             CceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          279 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      .+..+.||.+.|.|++=+|..  .++||+.||.|++||+.+..+...+. |.+.|..+++.   ...+++++.|.+|+.|
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~---~~~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVT---QTSFFTVGDDKTVKQW  134 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEec---ccceEEecCCcceeee
Confidence            356778999999999999975  79999999999999999999999986 88899999996   3678899999999999


Q ss_pred             eCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          356 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       356 d~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      .+... ..........+..+.-+..+..+++++.  .|.|||..-... .......      ...|.++.|+|-....|+
T Consensus       135 k~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~P-v~smswG------~Dti~svkfNpvETsILa  204 (433)
T KOG0268|consen  135 KIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNP-VSSMSWG------ADSISSVKFNPVETSILA  204 (433)
T ss_pred             eccCC-cceeeeccccccccccccccccccccCc--eeeecccccCCc-cceeecC------CCceeEEecCCCcchhee
Confidence            98775 4444445566777777667777877764  589999975543 3333332      267999999999878889


Q ss_pred             EEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCc
Q 006424          436 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV  515 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~  515 (645)
                      ++..|+.|.+||+++....-+.. -...-+.++|+|.+--+++|++|..++.||+.....+...+..             
T Consensus       205 s~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d-------------  270 (433)
T KOG0268|consen  205 SCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD-------------  270 (433)
T ss_pred             eeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcc-------------
Confidence            99999999999988533222211 2345578999998888899999999999999877444333222             


Q ss_pred             EEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcC
Q 006424          516 SVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQ  595 (645)
Q Consensus       516 ~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~  595 (645)
                                                             |.+-+.++.|||-|+-++|++. |.+|+|+....+.+.   
T Consensus       271 ---------------------------------------hvsAV~dVdfsptG~Efvsgsy-DksIRIf~~~~~~SR---  307 (433)
T KOG0268|consen  271 ---------------------------------------HVSAVMDVDFSPTGQEFVSGSY-DKSIRIFPVNHGHSR---  307 (433)
T ss_pred             ---------------------------------------cceeEEEeccCCCcchhccccc-cceEEEeecCCCcch---
Confidence                                                   2223344456666666777888 899999988776311   


Q ss_pred             ChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424          596 DPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       596 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                           .....-.-.....+.++. |.++|++||+||.||+|+.+
T Consensus       308 -----diYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  308 -----DIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             -----hhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecc
Confidence                 111111112222234444 89999999999999999965

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.8e-25  Score=228.37  Aligned_cols=287  Identities=18%  Similarity=0.270  Sum_probs=208.4

Q ss_pred             chhhhhh-cccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHH-----hhcc---cchhhccccCC
Q 006424           94 CMVDELE-QDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIIS-----MKKR---NVETCMSEKRK  164 (645)
Q Consensus        94 ~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~  164 (645)
                      .+.+.+. .|...||...|++++.+ ++++.+            |+-++.|-  +++     +...   .++..+.....
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGKy-LAsaGe------------D~virVWk--Vie~e~~~~~~~~~~~~~~~~~~~s~  321 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGKY-LASAGE------------DGVIRVWK--VIESERMRVAEGDSSCMYFEYNANSQ  321 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCce-eeecCC------------CceEEEEE--Eeccchhcccccccchhhhhhhhccc
Confidence            3566777 89999999999999999 999998            88888882  221     1111   01111111111


Q ss_pred             CCCCCCcc-----chhHhhhccccc-------ccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 006424          165 PNSEKPKA-----NKMEVKQNKKKC-------MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV  232 (645)
Q Consensus       165 ~~~~~~~~-----~~~~~~~~~~~~-------~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~  232 (645)
                      ........     ............       .-.....+.+.|.||.+.|..+.||.++ +|+++|.|++|++|++.. 
T Consensus       322 ~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-  399 (712)
T KOG0283|consen  322 IEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-  399 (712)
T ss_pred             cCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-
Confidence            00000000     000000000000       0012234567899999999999999765 999999999999999986 


Q ss_pred             ceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcE
Q 006424          233 AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTV  310 (645)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I  310 (645)
                                                                  ..++..|. |...|+|++|+|-  +++++|+-||.|
T Consensus       400 --------------------------------------------~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~Kv  434 (712)
T KOG0283|consen  400 --------------------------------------------KECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKV  434 (712)
T ss_pred             --------------------------------------------cceeeEEe-cCCeeEEEEecccCCCcEeecccccce
Confidence                                                        34456665 9999999999984  499999999999


Q ss_pred             EEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe---ecc------CCCeEEEEEccCC
Q 006424          311 RMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW---ADV------RDVISAICYIPDG  381 (645)
Q Consensus       311 ~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~------~~~v~~l~~sp~g  381 (645)
                      +||++...+.+.-.....-|++++|.| +|+..++|+.+|.+++|+....++..-   ..+      ...|+.+.|.|..
T Consensus       435 RiWsI~d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~  513 (712)
T KOG0283|consen  435 RLWSISDKKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGD  513 (712)
T ss_pred             EEeecCcCeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCC
Confidence            999999999998888889999999999 999999999999999999988776541   111      2279999999843


Q ss_pred             -CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424          382 -KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV  449 (645)
Q Consensus       382 -~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~  449 (645)
                       ..+++.+.|..|+|||.+...+....-.++.     ...-....|+.|| ++|+++++|..|++|+..
T Consensus       514 ~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-----~~SQ~~Asfs~Dg-k~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  514 PDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-----TSSQISASFSSDG-KHIVSASEDSWVYIWKND  576 (712)
T ss_pred             CCeEEEecCCCceEEEeccchhhhhhhccccc-----CCcceeeeEccCC-CEEEEeecCceEEEEeCC
Confidence             4688899999999999977665443222222     1334567899998 899999999999999975

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=7.2e-24  Score=213.78  Aligned_cols=375  Identities=15%  Similarity=0.163  Sum_probs=254.4

Q ss_pred             ccccccCcEEEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          195 EIQAHKGCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspdg~~L~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      .+..|..+++|++||++|+|+|+|-  ....+++|++..                                         
T Consensus        73 lvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~-----------------------------------------  111 (1080)
T KOG1408|consen   73 LVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAF-----------------------------------------  111 (1080)
T ss_pred             eecccCcceeEEEEcCCCcEEEecccCCCccceeeeecc-----------------------------------------
Confidence            3556888999999999999999985  667899999986                                         


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeC--CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                          ...+..|..|+..|+|++|+|.+ ++++.+.  |-.|.+||.+.+.....-.....|..++|+. ++.|+++++ +
T Consensus       112 ----h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsE-dgSYfvT~g-n  185 (1080)
T KOG1408|consen  112 ----HGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSE-DGSYFVTSG-N  185 (1080)
T ss_pred             ----ccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEcc-CCceeeeee-e
Confidence                33467788899999999999987 7887765  4568889887665555555667788888887 777777776 4


Q ss_pred             CcEEEEeCCCCcEE--------------------------------------EeeccC----------------------
Q 006424          350 GKVRIWGVCEKRVV--------------------------------------DWADVR----------------------  369 (645)
Q Consensus       350 g~i~vwd~~~~~~~--------------------------------------~~~~~~----------------------  369 (645)
                      ..|++|.+..++..                                      ...+|-                      
T Consensus       186 rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnC  265 (1080)
T KOG1408|consen  186 RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANC  265 (1080)
T ss_pred             eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccce
Confidence            67788866432200                                      000000                      


Q ss_pred             -----------------------------------------------------------CCeEEEEEccCCC--------
Q 006424          370 -----------------------------------------------------------DVISAICYIPDGK--------  382 (645)
Q Consensus       370 -----------------------------------------------------------~~v~~l~~sp~g~--------  382 (645)
                                                                                 ...-++.|++...        
T Consensus       266 IcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYnd  345 (1080)
T KOG1408|consen  266 ICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYND  345 (1080)
T ss_pred             eeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcC
Confidence                                                                       0011233333322        


Q ss_pred             ------------------------------------------------EEEEEecCCeEEEEEecCCce--eee------
Q 006424          383 ------------------------------------------------GFIVGSITGTCHFYKASGNDL--KLE------  406 (645)
Q Consensus       383 ------------------------------------------------~l~~g~~dg~i~iwd~~~~~~--~~~------  406 (645)
                                                                      .+.+++.||+|++||+.....  ...      
T Consensus       346 hSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~  425 (1080)
T KOG1408|consen  346 HSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSA  425 (1080)
T ss_pred             ceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchh
Confidence                                                            245566666666666643100  000      


Q ss_pred             ---EEeecc-------------------ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCe
Q 006424          407 ---KVDFHD-------------------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQ  464 (645)
Q Consensus       407 ---~~~~~~-------------------~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i  464 (645)
                         .+.+..                   ........+.+++.+|+| ++|++|...|.++||++.+.........|...|
T Consensus       426 ~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEi  504 (1080)
T KOG1408|consen  426 NLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTCFMEAHESEI  504 (1080)
T ss_pred             hhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceEEEEehhhhhhhheeccccee
Confidence               000000                   001123468899999998 899999999999999998777666777799999


Q ss_pred             EEEEEec---CCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCC--ccccccCCCCcccc
Q 006424          465 MSASFTT---TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG--TEQKSLCSSSLRDC  539 (645)
Q Consensus       465 ~~v~~sp---~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~--~~l~~~~~~~~~~~  539 (645)
                      .++.||.   ..++||+++.|.-|+|||+.....+...-..         +...++++.|...|  ..+.+++.|...+.
T Consensus       505 lcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~---------HSssITsvKFa~~gln~~MiscGADksimF  575 (1080)
T KOG1408|consen  505 LCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG---------HSSSITSVKFACNGLNRKMISCGADKSIMF  575 (1080)
T ss_pred             EEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc---------cccceeEEEEeecCCceEEEeccCchhhhe
Confidence            9999985   3578999999999999999876433332111         23446677776555  56666666655443


Q ss_pred             CccccccccCCccCCC----CccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCC--
Q 006424          540 SQKWDNLETAPWIRDS----ERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--  613 (645)
Q Consensus       540 ~~~w~~~~~~~~~~~~----~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  613 (645)
                      ........+..+.+.+    ...++.++.-|..++++++.. |..|+|++++++           +....+....++.  
T Consensus       576 r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ-Drnirif~i~sg-----------Kq~k~FKgs~~~eG~  643 (1080)
T KOG1408|consen  576 RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ-DRNIRIFDIESG-----------KQVKSFKGSRDHEGD  643 (1080)
T ss_pred             ehhccccCceeccccccccccceEEEeeeCCCcceEEEEec-ccceEEEecccc-----------ceeeeecccccCCCc
Confidence            3322222233333333    235677889999999999998 999999999999           4445555555553  


Q ss_pred             ---ccCCCCcceEEEEecCCCeEeEEEec
Q 006424          614 ---RAISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       614 ---~~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                         +...| -|-+|+|.-.|.++.++|++
T Consensus       644 lIKv~lDP-SgiY~atScsdktl~~~Df~  671 (1080)
T KOG1408|consen  644 LIKVILDP-SGIYLATSCSDKTLCFVDFV  671 (1080)
T ss_pred             eEEEEECC-CccEEEEeecCCceEEEEec
Confidence               22335 48999999999999999976

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=1.8e-24  Score=210.85  Aligned_cols=244  Identities=16%  Similarity=0.196  Sum_probs=181.5

Q ss_pred             CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE----EEEec--CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC----LNVFD--HHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~----~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                      ......+.+|+..|.++++.|.| +|++||.|-+|++||+.....    .+.+.  ....|++++|++ .++.|++.+..
T Consensus       157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~  235 (641)
T KOG0772|consen  157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGS  235 (641)
T ss_pred             ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecC
Confidence            33445778899999999999998 999999999999999864322    22222  455799999999 88888888888


Q ss_pred             CcEEEEeCCCCcEEE-------------eeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccc
Q 006424          350 GKVRIWGVCEKRVVD-------------WADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  415 (645)
Q Consensus       350 g~i~vwd~~~~~~~~-------------~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  415 (645)
                      ...+|+|-...+...             ..+|...++|.+|+|+. ..+++++.||++++||+.........+.... ..
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~-~~  314 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP-AG  314 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc-CC
Confidence            999999987765543             35677889999999965 4789999999999999987765554443222 22


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc----e-eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          416 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV----I-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       416 ~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~----~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      ...-+++.++|+++| .++|+|+.||.|.+|+....    . ..-..|.....|+++.||+||++|++-|.|+++++||+
T Consensus       315 g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL  393 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL  393 (641)
T ss_pred             CcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence            334678999999998 78999999999999996521    1 12222333448999999999999999999999999999


Q ss_pred             CCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccc
Q 006424          491 DELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS  530 (645)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~  530 (645)
                      +..+.++.........       -....++|+|+...+++
T Consensus       394 rq~kkpL~~~tgL~t~-------~~~tdc~FSPd~kli~T  426 (641)
T KOG0772|consen  394 RQFKKPLNVRTGLPTP-------FPGTDCCFSPDDKLILT  426 (641)
T ss_pred             cccccchhhhcCCCcc-------CCCCccccCCCceEEEe
Confidence            9876544432221111       11234556666665554

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=3.7e-24  Score=215.80  Aligned_cols=335  Identities=16%  Similarity=0.163  Sum_probs=246.0

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424          203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  282 (645)
Q Consensus       203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (645)
                      ..++.|++....|.+...|..++|||++.......                                          ...
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk------------------------------------------~~s  364 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK------------------------------------------CSS  364 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccc------------------------------------------eee
Confidence            35788999999999999999999999987432211                                          112


Q ss_pred             eccCccCeEEEEE------------cCCCeEEEEeCCCcEEEEecCCC---eEEEE------------------------
Q 006424          283 LHGHKGDVLDLAW------------SNSNYLLSCSMDKTVRMWQVGCN---QCLNV------------------------  323 (645)
Q Consensus       283 l~~h~~~V~~l~~------------s~~~~l~s~s~dg~I~iwd~~~~---~~~~~------------------------  323 (645)
                      +--|...|+.+.-            -|.+.+++|+.|++|++||++.+   +..+.                        
T Consensus       365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~  444 (1080)
T KOG1408|consen  365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDAS  444 (1080)
T ss_pred             eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhcc
Confidence            2224444444332            24467999999999999998752   11110                        


Q ss_pred             -----------ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE-EEeeccCCCeEEEEEcc---CCCEEEEEe
Q 006424          324 -----------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIP---DGKGFIVGS  388 (645)
Q Consensus       324 -----------~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~v~~l~~sp---~g~~l~~g~  388 (645)
                                 ++....+++++.+| ++++|++|..-|+++|||+..-+. .....|...|.|+.|+.   ..++||+++
T Consensus       445 ~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas  523 (1080)
T KOG1408|consen  445 AGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS  523 (1080)
T ss_pred             CCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc
Confidence                       11234689999999 999999999999999999987554 45778999999999986   357899999


Q ss_pred             cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC-CcEEEEEECCCeEEEEECC--cceeeEeecC---CCC
Q 006424          389 ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE-SQRIMITSEDSKLRILDGV--DVIHKFKGLP---KSG  462 (645)
Q Consensus       389 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g-~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~---~~~  462 (645)
                      .|..|++||...+...      .+....|...|+++.|...| ...+++++.|..|.+--.+  .....+..+.   ...
T Consensus       524 rdRlIHV~Dv~rny~l------~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt  597 (1080)
T KOG1408|consen  524 RDRLIHVYDVKRNYDL------VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT  597 (1080)
T ss_pred             CCceEEEEecccccch------hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc
Confidence            9999999999866543      33344556899999998765 3567888888776543322  1122222221   345


Q ss_pred             CeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCcc
Q 006424          463 SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQK  542 (645)
Q Consensus       463 ~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~  542 (645)
                      .+..|+..|..+++++++.|..|+|||+.+++.......       .-.++|...-+...|.|.++++.++|.-... .-
T Consensus       598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg-------s~~~eG~lIKv~lDPSgiY~atScsdktl~~-~D  669 (1080)
T KOG1408|consen  598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG-------SRDHEGDLIKVILDPSGIYLATSCSDKTLCF-VD  669 (1080)
T ss_pred             eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc-------cccCCCceEEEEECCCccEEEEeecCCceEE-EE
Confidence            688999999999999999999999999999853221110       1124678888999999999998888754332 22


Q ss_pred             ccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcC
Q 006424          543 WDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQ  595 (645)
Q Consensus       543 w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~  595 (645)
                      ....+....+.+|+..++++-|++|-++|.|++. ||.|.||.++......|+
T Consensus       670 f~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsg-DgCIFvW~lp~~mii~m~  721 (1080)
T KOG1408|consen  670 FVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSG-DGCIFVWKLPLTMIIRMV  721 (1080)
T ss_pred             eccchhhhhhcCcchheeeeeecccchhheeecC-CceEEEEECchhHhHHHH
Confidence            2335666789999999999999999999999998 999999998765433343

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=1.5e-23  Score=211.50  Aligned_cols=411  Identities=18%  Similarity=0.207  Sum_probs=280.0

Q ss_pred             ccccccccccccCcEEEEEECCCCC---EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424          189 ALYTSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  265 (645)
Q Consensus       189 ~~~~~~~l~~H~~~V~~l~fspdg~---~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (645)
                      .+.....|.||.+.|.+++|...+.   +|||+|.|..||||.+.-+..... ............  ...+...      
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~-~~~e~~~t~~~~--~~~f~~l------  250 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDS-NEREDSLTTLSN--LPVFMIL------  250 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccc-cccccccccccC--Cceeeee------
Confidence            3456678999999999999987544   899999999999999865331110 000000000000  0000000      


Q ss_pred             eecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC--eEEEE--ec----CCCcEEEEEEe
Q 006424          266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNV--FD----HHNYVTCVQFN  336 (645)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~--~~~~~--~~----~~~~v~~l~~~  336 (645)
                           .-....-..-..+.||++.|+++.|+|.+ .|+++|.|.++.+|...+.  --+..  ++    .........|+
T Consensus       251 -----~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~  325 (764)
T KOG1063|consen  251 -----EEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS  325 (764)
T ss_pred             -----eeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc
Confidence                 00000001113455999999999999998 8999999999999987654  22222  22    23457889999


Q ss_pred             eCCCCEEEEEeCCCcEEEEeCCCCc----EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecc
Q 006424          337 PIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  412 (645)
Q Consensus       337 p~~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  412 (645)
                      | +++.+++-+..|..++|......    .....+|-+.|..++|+|.|.++++.+.|.+-++|-.-+.+..   +.-..
T Consensus       326 ~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~---wHEia  401 (764)
T KOG1063|consen  326 P-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE---WHEIA  401 (764)
T ss_pred             C-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc---eeeec
Confidence            9 89999999999999999844322    2236789999999999999999999999999999877644433   33344


Q ss_pred             ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--------------------------------ceeeE-----
Q 006424          413 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--------------------------------VIHKF-----  455 (645)
Q Consensus       413 ~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--------------------------------~~~~~-----  455 (645)
                      +++.|+..++|++|-+.. ..+++|.....+|+|+...                                ....+     
T Consensus       402 RPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~  480 (764)
T KOG1063|consen  402 RPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETN  480 (764)
T ss_pred             ccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccc
Confidence            556678899999999853 6889999999999995110                                00000     


Q ss_pred             ---------------------------------------eecCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCC
Q 006424          456 ---------------------------------------KGLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYD  491 (645)
Q Consensus       456 ---------------------------------------~~~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~  491 (645)
                                                             +..+|...|.+++.+|+++++|+++..     ..|++|+..
T Consensus       481 ~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~  560 (764)
T KOG1063|consen  481 TGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA  560 (764)
T ss_pred             cccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc
Confidence                                                   112367789999999999999998753     469999987


Q ss_pred             CCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCC------ccCCCCccccCcccc
Q 006424          492 ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP------WIRDSERFSLGSWFS  565 (645)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~------~~~~~~~~~~~~~fs  565 (645)
                      +-....         . ...|.-.++.++|+||+.+|.+.+.|..   ..+|..-+...      ....|.+.+-+..|+
T Consensus       561 ~W~~~~---------~-L~~HsLTVT~l~FSpdg~~LLsvsRDRt---~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~  627 (764)
T KOG1063|consen  561 NWLQVQ---------E-LEGHSLTVTRLAFSPDGRYLLSVSRDRT---VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWS  627 (764)
T ss_pred             chhhhh---------e-ecccceEEEEEEECCCCcEEEEeecCce---EEeeeeecccchhhhhccccccceEEEEcccC
Confidence            652211         1 1123345778999999999999998844   34444422211      256688888899999


Q ss_pred             CCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCC--ccCCCCc----ceEEEEecCCCeEeEEEec
Q 006424          566 NDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATW----GLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       566 ~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d----~~~ivt~s~Dg~Iriw~~~  639 (645)
                      ||+.+.++++. |+++++|..+...      .++ ........+...+  +++.+-+    +.+++.|=.-|.|.+|+.+
T Consensus       628 pde~~FaTaSR-DK~VkVW~~~~~~------d~~-i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  628 PDEKYFATASR-DKKVKVWEEPDLR------DKY-ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             cccceeEEecC-CceEEEEeccCch------hhh-hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            99999999999 9999999988762      111 1111222333332  2222222    3488889999999999976

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=8.7e-23  Score=188.91  Aligned_cols=251  Identities=13%  Similarity=0.225  Sum_probs=194.8

Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC--CCcEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI--DGKVR  353 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~--dg~i~  353 (645)
                      ++.+.+....+.|+++.|+++| .+++++.|.++++||..+++.++++. +.-.+..++|.. ..+.++.++.  |.+|+
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceE
Confidence            3345555567899999999998 88899999999999999999999886 445788888887 6666766666  88999


Q ss_pred             EEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424          354 IWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       354 vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                      ..++.+.+.++ +.+|...|++++.+|-+..+++++.|++|++||++..+.+.. +..        ..-..++|.|.| -
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-l~~--------~~~pi~AfDp~G-L  153 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-LNL--------SGRPIAAFDPEG-L  153 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-Eec--------CCCcceeECCCC-c
Confidence            99999988776 789999999999999999999999999999999997665432 111        223457899998 7


Q ss_pred             EEEEEECCCeEEEEECCc----ceeeEeec-CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCccee
Q 006424          433 RIMITSEDSKLRILDGVD----VIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC  507 (645)
Q Consensus       433 ~l~~~s~dg~I~iwd~~~----~~~~~~~~-~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  507 (645)
                      ++|++.....|++||++.    +..++... ......+.+.|||||++|+.++..+.+++.|.-+|....          
T Consensus       154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~----------  223 (311)
T KOG1446|consen  154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS----------  223 (311)
T ss_pred             EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee----------
Confidence            788888777999999873    44555543 346678999999999999999999999999987762100          


Q ss_pred             eeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCc
Q 006424          508 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT  587 (645)
Q Consensus       508 ~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~  587 (645)
                                .+...+...                              ..-.+..|+|||+.+.+++. ||+|.+|++.
T Consensus       224 ----------tfs~~~~~~------------------------------~~~~~a~ftPds~Fvl~gs~-dg~i~vw~~~  262 (311)
T KOG1446|consen  224 ----------TFSGYPNAG------------------------------NLPLSATFTPDSKFVLSGSD-DGTIHVWNLE  262 (311)
T ss_pred             ----------eEeeccCCC------------------------------CcceeEEECCCCcEEEEecC-CCcEEEEEcC
Confidence                      111111110                              01123458889998888887 8999999999


Q ss_pred             cCC
Q 006424          588 IDS  590 (645)
Q Consensus       588 ~~~  590 (645)
                      ++.
T Consensus       263 tg~  265 (311)
T KOG1446|consen  263 TGK  265 (311)
T ss_pred             CCc
Confidence            883

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.1e-23  Score=191.79  Aligned_cols=294  Identities=18%  Similarity=0.256  Sum_probs=219.6

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424          203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  282 (645)
Q Consensus       203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (645)
                      -.|+.|++.|.+||+|+.||.|.|||+.+                                             ...-+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T---------------------------------------------~~iar~   60 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDT---------------------------------------------FRIARM   60 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccc---------------------------------------------cchhhh
Confidence            78999999999999999999999999987                                             344577


Q ss_pred             eccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc
Q 006424          283 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  361 (645)
Q Consensus       283 l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~  361 (645)
                      +.+|..+|.+++||++| .|+|+|.|..|.+||+..|.+++.+...++|+.+.|+|.+.+.+++.-.+..-.+-++..+.
T Consensus        61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~  140 (405)
T KOG1273|consen   61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK  140 (405)
T ss_pred             hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence            88999999999999998 89999999999999999999999999999999999999777777776666666666666533


Q ss_pred             EEEeec-----cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          362 VVDWAD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       362 ~~~~~~-----~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      ...+..     ......+..|.+.|+++++|...|.+.+||..+.+.... .....     ...|..+.++..| .+++.
T Consensus       141 h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas-~rits-----~~~IK~I~~s~~g-~~lii  213 (405)
T KOG1273|consen  141 HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS-FRITS-----VQAIKQIIVSRKG-RFLII  213 (405)
T ss_pred             eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee-eeech-----heeeeEEEEeccC-cEEEE
Confidence            222211     111223346889999999999999999999998765432 11111     2568889999997 89999


Q ss_pred             EECCCeEEEEECCcceee-----------EeecCCCCCeEEEEEecCCCEEEEEeC-CccEEEEeCCCCCcCCCcccCCc
Q 006424          437 TSEDSKLRILDGVDVIHK-----------FKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSV  504 (645)
Q Consensus       437 ~s~dg~I~iwd~~~~~~~-----------~~~~~~~~~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~~~~~~~~~~~  504 (645)
                      .+.|..|+.|++.+....           +....+...-.+++||.+|.|++.|+. ...++||.-..|......+..  
T Consensus       214 NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~--  291 (405)
T KOG1273|consen  214 NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT--  291 (405)
T ss_pred             ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC--
Confidence            999999999997632221           111223344568899999999988874 468999998877432222111  


Q ss_pred             ceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCC
Q 006424          505 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCR  571 (645)
Q Consensus       505 ~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l  571 (645)
                             .....+.+.|.|-...+++..++    .+.+|....-..+          .+|+||-+.+
T Consensus       292 -------kgE~l~DV~whp~rp~i~si~sg----~v~iw~~~~~enw----------safAPdFqel  337 (405)
T KOG1273|consen  292 -------KGEELLDVNWHPVRPIIASIASG----VVYIWAVVQVENW----------SAFAPDFQEL  337 (405)
T ss_pred             -------chhheeecccccceeeeeeccCC----ceEEEEeecccch----------hhcCchHHHH
Confidence                   12346789999999999988654    3456665432222          2577777644

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=7.6e-22  Score=173.25  Aligned_cols=305  Identities=16%  Similarity=0.178  Sum_probs=214.0

Q ss_pred             cccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       190 ~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      +..+.+|. -+..|.+++|+|.|.+.|.|+..++.+|...........     ++ .....+                  
T Consensus        23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~-----~h-ea~~~p------------------   77 (350)
T KOG0641|consen   23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH-----AH-EAAKQP------------------   77 (350)
T ss_pred             eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCccc-----cc-ccccCC------------------
Confidence            33444443 566799999999999999999999999875432100000     00 000000                  


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE------EEEecCCCcEEEEEEee---CC
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC------LNVFDHHNYVTCVQFNP---ID  339 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~------~~~~~~~~~v~~l~~~p---~~  339 (645)
                            .....+.-+.|.+.|.|.+|+|+| .+++|+.|++|++...+...+      +...-|.+.|..++|..   ..
T Consensus        78 ------p~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~  151 (350)
T KOG0641|consen   78 ------PSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESG  151 (350)
T ss_pred             ------CeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcC
Confidence                  001122334689999999999998 899999999999987654333      22223889999999964   12


Q ss_pred             CCEEEEEeC-CCcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE-Eeecccccc
Q 006424          340 DNYFISGSI-DGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-VDFHDRKKT  416 (645)
Q Consensus       340 ~~~l~s~s~-dg~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~  416 (645)
                      +.+|++++. |..|++-|-..++.. .+.+|.+.|.++ ++-+|-.+++|+.|.+|++||++-....... ..+++. ..
T Consensus       152 ~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~-gl  229 (350)
T KOG0641|consen  152 GAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG-GL  229 (350)
T ss_pred             ceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC-Cc
Confidence            446777664 566777787766644 478888888876 3456889999999999999999866543221 111111 11


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424          417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  496 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~  496 (645)
                      ....|.+++..|.| ++|++|-.|....+||++........+.|...|.++.|+|...|+++++.|..|++=|+......
T Consensus       230 essavaav~vdpsg-rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~  308 (350)
T KOG0641|consen  230 ESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH  308 (350)
T ss_pred             ccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh
Confidence            23679999999998 89999999999999999977666777779999999999999999999999999999999865211


Q ss_pred             CCcccCCcceeeeeecCCcEEEEecCCCCccccccCCC
Q 006424          497 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS  534 (645)
Q Consensus       497 ~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~  534 (645)
                          .  ......-.+........|.|....+.+.+.|
T Consensus       309 ----e--l~~~vv~ehkdk~i~~rwh~~d~sfisssad  340 (350)
T KOG0641|consen  309 ----E--LPIMVVAEHKDKAIQCRWHPQDFSFISSSAD  340 (350)
T ss_pred             ----c--CceEEEEeccCceEEEEecCccceeeeccCc
Confidence                0  1111222345556788899887666654443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=1.7e-22  Score=208.01  Aligned_cols=363  Identities=13%  Similarity=0.164  Sum_probs=271.0

Q ss_pred             EEEEEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          203 IWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       203 V~~l~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      |+++. +|.  -+.++.|+.+|.+.+|++++                                             ++.+
T Consensus       162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt---------------------------------------------~K~v  195 (910)
T KOG1539|consen  162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRT---------------------------------------------GKVV  195 (910)
T ss_pred             eeeEe-cchhheeeEEEeecCCcEEEEEecc---------------------------------------------CcEE
Confidence            77776 564  35789999999999999998                                             6778


Q ss_pred             eeeccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEecCC-CcEEEEEEeeCCCC-EEEEEeCCCcEEEEeC
Q 006424          281 QELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDN-YFISGSIDGKVRIWGV  357 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-~~v~~l~~~p~~~~-~l~s~s~dg~i~vwd~  357 (645)
                      .+++++...|+++.-+|- +.++.|..+|+|.+++++.++.+.+|.|. +.|+.++|.. ||+ ++++|+..|.+-+||+
T Consensus       196 ~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt-DG~p~las~~~~G~m~~wDL  274 (910)
T KOG1539|consen  196 YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT-DGNPLLASGRSNGDMAFWDL  274 (910)
T ss_pred             EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEecc-CCCeeEEeccCCceEEEEEc
Confidence            999999999999998886 58999999999999999999999999986 8999999998 665 5777777899999999


Q ss_pred             CCCcEEE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          358 CEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       358 ~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      +..++..  ...|.+.+....|-|....+++++.|+.+++|-..++.........   ..+|..+..|+.|.-.....+.
T Consensus       275 e~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~---R~GHs~Pp~~irfy~~~g~~il  351 (910)
T KOG1539|consen  275 EKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRS---RGGHSAPPSCIRFYGSQGHFIL  351 (910)
T ss_pred             CCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheee---ccCCCCCchheeeeccCcEEEE
Confidence            9988765  3457789999999999999999999999998877654443332222   2345677888888744347788


Q ss_pred             EEECCCeEEEEEC-----------------------------------------------------------------Cc
Q 006424          436 ITSEDSKLRILDG-----------------------------------------------------------------VD  450 (645)
Q Consensus       436 ~~s~dg~I~iwd~-----------------------------------------------------------------~~  450 (645)
                      +++.|++.+.+++                                                                 ++
T Consensus       352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n  431 (910)
T KOG1539|consen  352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN  431 (910)
T ss_pred             ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence            8888877666542                                                                 10


Q ss_pred             ce-eeEeec-----CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCC
Q 006424          451 VI-HKFKGL-----PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI  524 (645)
Q Consensus       451 ~~-~~~~~~-----~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~  524 (645)
                      .. ..+...     .....+++++.++.|++.+.|++.|.|-+|++.++-......       -...+++.+++++-..-
T Consensus       432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~-------~~~ah~~~V~gla~D~~  504 (910)
T KOG1539|consen  432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG-------DSPAHKGEVTGLAVDGT  504 (910)
T ss_pred             cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc-------cCccccCceeEEEecCC
Confidence            00 000000     022568899999999999999999999999999883211110       01246788999998888


Q ss_pred             CccccccCCCCccccCccccccccCC-ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhh
Q 006424          525 GTEQKSLCSSSLRDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQ  603 (645)
Q Consensus       525 ~~~l~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~  603 (645)
                      +..+.+++.+++   ..+|+-..... ..-..+..++++.+......++.+-. +-.|++.|..+.           +..
T Consensus       505 n~~~vsa~~~Gi---lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d-df~I~vvD~~t~-----------kvv  569 (910)
T KOG1539|consen  505 NRLLVSAGADGI---LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD-DFSIRVVDVVTR-----------KVV  569 (910)
T ss_pred             CceEEEccCcce---EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC-ceeEEEEEchhh-----------hhh
Confidence            888888887755   45676644332 11112345566667777776666655 789999999987           444


Q ss_pred             hhhccCCCCC--ccCCCCcceEEEEecCCCeEeEEEe
Q 006424          604 QQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHN  638 (645)
Q Consensus       604 ~~~~~~~~~~--~~~~~~d~~~ivt~s~Dg~Iriw~~  638 (645)
                      +.+.+|.+..  .+|++ ||++|++++.|++||+||+
T Consensus       570 R~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  570 REFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             HHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEec
Confidence            5555555544  55666 8999999999999999995

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.5e-22  Score=210.67  Aligned_cols=269  Identities=17%  Similarity=0.237  Sum_probs=208.5

Q ss_pred             ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      .+|++.-+.++|.|+|++|++++.||.|++|+..+..                                           
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-------------------------------------------   46 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-------------------------------------------   46 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-------------------------------------------
Confidence            3799999999999999999999999999999876521                                           


Q ss_pred             CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                       ..-..+.-+...|.+++.. .++|++|+.+++|.+|.+.+++.-..+ ...-++++++|+. +|++++.||.|-.|++.
T Consensus        47 -e~P~ti~~~g~~v~~ia~~-s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~  123 (933)
T KOG1274|consen   47 -EEPETIDISGELVSSIACY-SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLL  123 (933)
T ss_pred             -cCCchhhccCceeEEEeec-ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEE
Confidence             1112222267778888754 348999999999999999888765444 3667899999998 99999999999999999


Q ss_pred             eCCCC-cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC-CCCeEEEEEcCCCCcE
Q 006424          356 GVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNKITGIQFSRDESQR  433 (645)
Q Consensus       356 d~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~s~~g~~~  433 (645)
                      ++... ....+.+|..+|.++.|+|++++||+.+.||.|++||+.+.......-......... ...+..++|+|+| ..
T Consensus       124 ~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~  202 (933)
T KOG1274|consen  124 NLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-GT  202 (933)
T ss_pred             eccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-Ce
Confidence            98764 455688999999999999999999999999999999999776543321111111111 3557789999997 57


Q ss_pred             EEEEECCCeEEEEECCcceeeE--eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee
Q 006424          434 IMITSEDSKLRILDGVDVIHKF--KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF  511 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~~~~~~~--~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  511 (645)
                      ++....|+.|++|+.......+  ....+...+..+.|+|+|+|||+++.||.|.|||.++...   ......+.|+.+.
T Consensus       203 la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~  279 (933)
T KOG1274|consen  203 LAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWK  279 (933)
T ss_pred             EEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEecC
Confidence            8888889999999977544444  3444555699999999999999999999999999997322   2233445555666


Q ss_pred             cCCc
Q 006424          512 SEGV  515 (645)
Q Consensus       512 ~~g~  515 (645)
                      +++.
T Consensus       280 p~~n  283 (933)
T KOG1274|consen  280 PNAN  283 (933)
T ss_pred             CCCC
Confidence            5543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=1.6e-22  Score=196.92  Aligned_cols=324  Identities=17%  Similarity=0.234  Sum_probs=233.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      .-|.|++|.++|. ++||..+|.|.||+..+.                                             +..
T Consensus       247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~---------------------------------------------~~~  280 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTN---------------------------------------------RIS  280 (626)
T ss_pred             eEEEEEEEcCCCC-EEeecCCceEEEEeCCCc---------------------------------------------eEE
Confidence            5799999999985 789999999999998652                                             223


Q ss_pred             eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCC-----------------------------------------Ce
Q 006424          281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-----------------------------------------NQ  319 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~-----------------------------------------~~  319 (645)
                      +....|.+.|.+++...+|.|+||+.|..|..||-.-                                         +-
T Consensus       281 k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f  360 (626)
T KOG2106|consen  281 KQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF  360 (626)
T ss_pred             eEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence            3444899999999999999999999999999998210                                         01


Q ss_pred             EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEec
Q 006424          320 CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  399 (645)
Q Consensus       320 ~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~  399 (645)
                      .+..++|....+.++.+| +.+.+++++.|+.+++|+  ..++.-.....++..|+.|+|.| .+|+|+..|...+.|..
T Consensus       361 ~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e  436 (626)
T KOG2106|consen  361 TLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTE  436 (626)
T ss_pred             eEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecc
Confidence            112235777889999999 889999999999999999  55666566677889999999999 99999999999999998


Q ss_pred             CCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEe--ecCCCCCeEEEEEecCCCEEE
Q 006424          400 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK--GLPKSGSQMSASFTTTGKHII  477 (645)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~--~~~~~~~i~~v~~sp~~~~l~  477 (645)
                      +........  .      ..+++++.|+|+| .+||.|+.|+.|+||-+......+.  +..+..+|+.+.||+|+++|.
T Consensus       437 ~~~lv~~~~--d------~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~  507 (626)
T KOG2106|consen  437 TQDLVTIHT--D------NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLV  507 (626)
T ss_pred             cceeEEEEe--c------CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEE
Confidence            855433211  1      3789999999998 8999999999999998764333332  222448999999999999999


Q ss_pred             EEeCCccEEEEeCCCCCcCCCcccCCc----cee-eeee----cC-CcEEEEecCCCCccccccCCCCccccCc--cccc
Q 006424          478 SIGDDCRVYVWNYDELCFPSSKQKNSV----RSC-EHFF----SE-GVSVAVQWPGIGTEQKSLCSSSLRDCSQ--KWDN  545 (645)
Q Consensus       478 t~s~dg~I~iwd~~~~~~~~~~~~~~~----~~~-~~~~----~~-g~~~~v~~s~~~~~l~~~~~~~~~~~~~--~w~~  545 (645)
                      +-+.|-.|..| ..+....... .+.+    ..| +-|.    .+ ..+.+++-+-....+++....+..+.+.  .-..
T Consensus       508 ~~S~d~eiLyW-~~~~~~~~ts-~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~  585 (626)
T KOG2106|consen  508 SNSGDYEILYW-KPSECKQITS-VKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSP  585 (626)
T ss_pred             eccCceEEEEE-ccccCcccce-ecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCC
Confidence            99999999999 3333222111 2211    111 1121    11 2233444455555555544443322221  1112


Q ss_pred             cccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCC
Q 006424          546 LETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV  586 (645)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~  586 (645)
                      -...+...+|++.++.++|+-+..++.+... |..|..|++
T Consensus       586 rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~-D~Si~qW~l  625 (626)
T KOG2106|consen  586 RAPSHEYGGHSSHVTNVAFLCKDSHLISTGK-DTSIMQWRL  625 (626)
T ss_pred             cccceeeccccceeEEEEEeeCCceEEecCC-CceEEEEEe
Confidence            2223355667889999999998887776664 888888875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.9e-24  Score=219.20  Aligned_cols=244  Identities=16%  Similarity=0.266  Sum_probs=199.9

Q ss_pred             EEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          203 IWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       203 V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      +..+.|+. +.++|||++..|.|.+||+...                                          ...+.+.
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~------------------------------------------~rnk~l~  127 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS------------------------------------------IRNKLLT  127 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCcc------------------------------------------ccchhhh
Confidence            45566764 4679999999999999999751                                          0245567


Q ss_pred             eeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424          282 ELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  358 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  358 (645)
                      .|..|+..++++.|++.  ++|++||.||+|++||++..+...++. ....|+.+.|+|..+++|+++.+.|.+.+||+|
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR  207 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR  207 (839)
T ss_pred             HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence            88899999999999975  489999999999999999888877774 667899999999889999999999999999999


Q ss_pred             CCcE--EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          359 EKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       359 ~~~~--~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      ....  ..+..|.++|.++.|+|++.+||+|+.|+.|+|||+.+...... ...+.     ..++.++.|-|..+.+|++
T Consensus       208 qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~-~tInT-----iapv~rVkWRP~~~~hLAt  281 (839)
T KOG0269|consen  208 QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK-HTINT-----IAPVGRVKWRPARSYHLAT  281 (839)
T ss_pred             CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce-eEEee-----cceeeeeeeccCccchhhh
Confidence            8553  45788999999999999999999999999999999986554322 22222     3789999999998778888


Q ss_pred             EEC--CCeEEEEECCcceeeEe-ecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCCC
Q 006424          437 TSE--DSKLRILDGVDVIHKFK-GLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       437 ~s~--dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      ++.  |-.|+|||++.+...+. ...|...++.++|.. |...+.+++.||+|..-.+++..
T Consensus       282 csmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  282 CSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             hhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            764  78999999986544333 345888999999955 55678999999999877776653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=7.7e-23  Score=206.55  Aligned_cols=277  Identities=25%  Similarity=0.430  Sum_probs=206.4

Q ss_pred             ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeE-ec-CCCCccc-C----CCCceEEecccCC
Q 006424          189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS-FT-DDGGFGS-N----AKEGKIKFGKKKS  261 (645)
Q Consensus       189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~-~~-~~~~~~~-~----~~~~~~~~~~~~~  261 (645)
                      ...+.+++.||...|..+++.++. .++++|.||++++|+-......... +. +.+.... .    ...+.+.+.....
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT   81 (745)
T ss_pred             cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence            345678899999999999987554 8999999999999998665443321 11 1111111 0    1111122222111


Q ss_pred             CcceeecCCCceec-cCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCC
Q 006424          262 SHVPVVIPDEVFQI-EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPID  339 (645)
Q Consensus       262 ~~~~~~~~~~~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~  339 (645)
                      .. .      ++.. ...++..+.||...|.+++...++.++|||.|.++++|...  ++...+ +|+..|++++..| +
T Consensus        82 ~i-~------v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~-e  151 (745)
T KOG0301|consen   82 TI-I------VFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLP-E  151 (745)
T ss_pred             eE-E------EEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch--hhhcccCCcchheeeeeecC-C
Confidence            11 1      1221 35788999999999999998777789999999999999874  444444 5999999999998 4


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424          340 DNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  419 (645)
Q Consensus       340 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  419 (645)
                      + .+++|+.|.+|++|.- ......+.+|.+.|+.+++-+++ .|++++.||.|++|++.+... .+   +++    |..
T Consensus       152 ~-~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l-~~---~~g----htn  220 (745)
T KOG0301|consen  152 N-TYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVL-LE---MHG----HTN  220 (745)
T ss_pred             C-cEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCcee-ee---eec----cce
Confidence            4 8999999999999986 44455688999999999998765 688899999999999954433 22   333    357


Q ss_pred             CeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          420 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       420 ~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      .+.+++...++ ..++++++|++++||+...+.+.+..  ....|.++.+-++|. |++|++||.||||..+
T Consensus       221 ~vYsis~~~~~-~~Ivs~gEDrtlriW~~~e~~q~I~l--PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  221 FVYSISMALSD-GLIVSTGEDRTLRIWKKDECVQVITL--PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEEEEEecCCC-CeEEEecCCceEEEeecCceEEEEec--CccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            89999966665 69999999999999998877777765  455889999888876 6677889999999876

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=196.05  Aligned_cols=287  Identities=14%  Similarity=0.173  Sum_probs=218.5

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      -.+.|+++.|+|....|++|+.||+++||.+....                                           ..
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~-------------------------------------------N~  248 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-------------------------------------------NP  248 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCcc-------------------------------------------Ch
Confidence            45789999999999999999999999999987521                                           33


Q ss_pred             CceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe---cC-CCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424          279 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF---DH-HNYVTCVQFNPIDDNYFISGSIDGKV  352 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~---~~-~~~v~~l~~~p~~~~~l~s~s~dg~i  352 (645)
                      .++.+.--..+|.+++|.|+|  .+++++.....+.||+.+.+..+.-   ++ ...+.....+| ++++|+..+..|.|
T Consensus       249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I  327 (514)
T KOG2055|consen  249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHI  327 (514)
T ss_pred             hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceE
Confidence            456666667899999999987  6889999999999999988765433   22 34677888899 99999999999999


Q ss_pred             EEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424          353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                      .+....+++.+......+.|..++|+.+|+.|++.+.+|.|.+||++....... +.-.+.     -.-++++.+++| .
T Consensus       328 ~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r-f~D~G~-----v~gts~~~S~ng-~  400 (514)
T KOG2055|consen  328 HLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR-FVDDGS-----VHGTSLCISLNG-S  400 (514)
T ss_pred             EeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE-EeecCc-----cceeeeeecCCC-c
Confidence            999999999999888999999999999999999999999999999998855332 222221     234677888887 7


Q ss_pred             EEEEEECCCeEEEEECCcc------eeeEeecCCCCCeEEEEEecCCCEEEEEeC--CccEEEEeCCCCCcCCCcccCCc
Q 006424          433 RIMITSEDSKLRILDGVDV------IHKFKGLPKSGSQMSASFTTTGKHIISIGD--DCRVYVWNYDELCFPSSKQKNSV  504 (645)
Q Consensus       433 ~l~~~s~dg~I~iwd~~~~------~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~--dg~I~iwd~~~~~~~~~~~~~~~  504 (645)
                      ++|+|+..|.|.|||....      ........-...|+++.|+||++.||.+|.  +..+++-.+.+.           
T Consensus       401 ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~-----------  469 (514)
T KOG2055|consen  401 YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC-----------  469 (514)
T ss_pred             eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce-----------
Confidence            9999999999999996532      222222234567999999999999998874  345555444322           


Q ss_pred             ceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCC
Q 006424          505 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLW  584 (645)
Q Consensus       505 ~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iW  584 (645)
                         ..|                              ..|..      ....-+++++++|||.|-+++.+.. .|++.+|
T Consensus       470 ---TVF------------------------------sNfP~------~n~~vg~vtc~aFSP~sG~lAvGNe-~grv~l~  509 (514)
T KOG2055|consen  470 ---TVF------------------------------SNFPT------SNTKVGHVTCMAFSPNSGYLAVGNE-AGRVHLF  509 (514)
T ss_pred             ---eee------------------------------ccCCC------CCCcccceEEEEecCCCceEEeecC-CCceeeE
Confidence               001                              11111      1122345677788888888877777 7888888


Q ss_pred             CCc
Q 006424          585 DVT  587 (645)
Q Consensus       585 d~~  587 (645)
                      .+.
T Consensus       510 kL~  512 (514)
T KOG2055|consen  510 KLH  512 (514)
T ss_pred             eec
Confidence            653

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=4.3e-22  Score=182.51  Aligned_cols=237  Identities=16%  Similarity=0.261  Sum_probs=193.1

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      -+....|.++|.+++|+.||..+++|+.|+.+++||+.++                                        
T Consensus        65 ~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~----------------------------------------  104 (347)
T KOG0647|consen   65 PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG----------------------------------------  104 (347)
T ss_pred             chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC----------------------------------------
Confidence            3556789999999999999999999999999999999873                                        


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCC-C--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNS-N--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~-~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                            .+..+..|.++|.++.|-+. +  .|+|||.|++|+.||.+...++.++...+.++++..-   ..+++++..+
T Consensus       105 ------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~---~pm~vVata~  175 (347)
T KOG0647|consen  105 ------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL---YPMAVVATAE  175 (347)
T ss_pred             ------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc---CceeEEEecC
Confidence                  35667789999999999764 2  7999999999999999999999999999999998873   4688889999


Q ss_pred             CcEEEEeCCCCcEEE---eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc--c---CCCCe
Q 006424          350 GKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK--T---SGNKI  421 (645)
Q Consensus       350 g~i~vwd~~~~~~~~---~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~---~~~~i  421 (645)
                      +.|.+|+++.+....   ....+-.++|++..++....+.|+-+|.+.+..+..... ...+.+.-|+.  .   .-..|
T Consensus       176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaV  254 (347)
T KOG0647|consen  176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAV  254 (347)
T ss_pred             CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEe
Confidence            999999997754322   233556789999999999899999999999999887533 22222322221  1   12467


Q ss_pred             EEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe
Q 006424          422 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      ++|+|+|.. ..|++++.||++.+||-....+......+..+|++.+|+.+|.++|-+.
T Consensus       255 Nsi~FhP~h-gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  255 NSIAFHPVH-GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             cceEeeccc-ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            889999985 7999999999999999665555555566899999999999999887664

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=4.4e-22  Score=181.50  Aligned_cols=311  Identities=18%  Similarity=0.247  Sum_probs=211.3

Q ss_pred             ccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          197 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       197 ~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      ..|.+.|+++...+ .|+|+++|+.||.|.+||+++......    . .+.+.                      ...  
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~----s-~li~k----------------------~~c--   90 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA----S-GLIAK----------------------HKC--   90 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh----c-cceeh----------------------eee--
Confidence            35999999999998 689999999999999999987321000    0 00000                      000  


Q ss_pred             cCCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCC--CEEEEEeCCCc
Q 006424          276 EESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD--NYFISGSIDGK  351 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~--~~l~s~s~dg~  351 (645)
                       .-....-.+|...|..+.|-|-  |.+.+++.|.+++|||..+-+....|..++.|+.-+++|...  -++|+|..|-.
T Consensus        91 -~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~  169 (397)
T KOG4283|consen   91 -IVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQ  169 (397)
T ss_pred             -eccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCc
Confidence             0011233478999999999873  699999999999999999999999999999999999998432  36788888899


Q ss_pred             EEEEeCCCCcEEE-eeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          352 VRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       352 i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      |++-|+.+|.... +.+|.+.|.++.|+|... .|++|+.||.|++||++...--......+.                 
T Consensus       170 VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn-----------------  232 (397)
T KOG4283|consen  170 VRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN-----------------  232 (397)
T ss_pred             EEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc-----------------
Confidence            9999999988755 789999999999999777 567899999999999984321111111110                 


Q ss_pred             CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC---Ccce
Q 006424          430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN---SVRS  506 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~---~~~~  506 (645)
                                  +.     +.+... ....|.+.+.+++|+.++.++++++.|.++++|+..++...+....+   ....
T Consensus       233 ------------~k-----~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~  294 (397)
T KOG4283|consen  233 ------------TK-----RPPILK-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT  294 (397)
T ss_pred             ------------Cc-----cCcccc-ccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc
Confidence                        00     001111 12347888999999999999999999999999998887533322111   0011


Q ss_pred             eeeee----cCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCC
Q 006424          507 CEHFF----SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP  582 (645)
Q Consensus       507 ~~~~~----~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~  582 (645)
                      ...++    ..+..+.+... ++..|..+.+...   ++.|+         .+...+.+.+|-|+-+-..+++. |+.|.
T Consensus       295 ~~~~~~~~~~s~vfv~~p~~-~~lall~~~sgs~---ir~l~---------~h~k~i~c~~~~~~fq~~~tg~~-d~ni~  360 (397)
T KOG4283|consen  295 SFAVHIQSMDSDVFVLFPND-GSLALLNLLEGSF---VRRLS---------THLKRINCAAYRPDFEQCFTGDM-NGNIY  360 (397)
T ss_pred             cceEEEeecccceEEEEecC-CeEEEEEccCceE---EEeee---------cccceeeEEeecCchhhhhcccc-CCccc
Confidence            11111    12222222222 4445555444322   22332         24455667778888888888888 89999


Q ss_pred             CCCC
Q 006424          583 LWDV  586 (645)
Q Consensus       583 iWd~  586 (645)
                      .|-.
T Consensus       361 ~w~p  364 (397)
T KOG4283|consen  361 MWSP  364 (397)
T ss_pred             cccc
Confidence            9965

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=9.3e-23  Score=197.11  Aligned_cols=222  Identities=19%  Similarity=0.326  Sum_probs=177.6

Q ss_pred             ccccccccccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          191 YTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      ...-+|.||++.=+.++|++... +|++|+.|++|.+||+........                                
T Consensus       168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~--------------------------------  215 (422)
T KOG0264|consen  168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK--------------------------------  215 (422)
T ss_pred             CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc--------------------------------
Confidence            34457899999889999999654 899999999999999986321100                                


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCC--eEEEEe-cCCCcEEEEEEeeCCCCEEE
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN--QCLNVF-DHHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~--~~~~~~-~~~~~v~~l~~~p~~~~~l~  344 (645)
                            ...+...+.+|+..|..++|++-  ..+++++.|+.+.|||++++  ++.... .|...|+|++|+|.++.+||
T Consensus       216 ------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilA  289 (422)
T KOG0264|consen  216 ------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILA  289 (422)
T ss_pred             ------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEE
Confidence                  13456788899999999999975  48999999999999999953  333333 48999999999999999999


Q ss_pred             EEeCCCcEEEEeCCC--CcEEEeeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeee-------EEeecccc
Q 006424          345 SGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLE-------KVDFHDRK  414 (645)
Q Consensus       345 s~s~dg~i~vwd~~~--~~~~~~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~-------~~~~~~~~  414 (645)
                      +||.|++|.+||+|.  ..+..+.+|...|.++.|+|. ...||+++.|+.+.+||+..-.....       ...+.-..
T Consensus       290 T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~H  369 (422)
T KOG0264|consen  290 TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH  369 (422)
T ss_pred             eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEe
Confidence            999999999999997  446678999999999999995 45888899999999999964322210       00000112


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424          415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  450 (645)
Q Consensus       415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~  450 (645)
                      .+|...|..+.|+|..+..+++.+.|+.+.||....
T Consensus       370 gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  370 GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            346788999999999989999999999999999653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=6.1e-23  Score=205.72  Aligned_cols=250  Identities=14%  Similarity=0.254  Sum_probs=205.0

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ....++.|.+.|+.+....+|+.|+++|.|-+|++|+...+.                                      
T Consensus        65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--------------------------------------  106 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN--------------------------------------  106 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--------------------------------------
Confidence            355688999999999999999999999999999999987631                                      


Q ss_pred             ceeccCCCceeeccCccCeEEEEE-cCCC-eEEEEeCCCcEEEEecCCC--eEEEEe----------cCCCcEEEEEEee
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAW-SNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF----------DHHNYVTCVQFNP  337 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~-s~~~-~l~s~s~dg~I~iwd~~~~--~~~~~~----------~~~~~v~~l~~~p  337 (645)
                           .-...++..|.+.|.|+++ .+++ .++|||.|+.|.+||++++  +.+..+          ++...|++++.++
T Consensus       107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~  181 (735)
T KOG0308|consen  107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ  181 (735)
T ss_pred             -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence                 1345678889999999999 5555 8999999999999999987  233332          3667899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCc-EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424          338 IDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  416 (645)
Q Consensus       338 ~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  416 (645)
                       .+..+++|+..+.+++||.++++ +..+.+|...|.++..++||..+++++.||+|++||+........ +..+     
T Consensus       182 -t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T-~~vH-----  254 (735)
T KOG0308|consen  182 -TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT-YIVH-----  254 (735)
T ss_pred             -cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee-EEec-----
Confidence             88899999999999999999854 566889999999999999999999999999999999998776543 3333     


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                       ...+.++..+|+- ..+++|++||.|..=|+++............+|..+..+...+-+-+++.|+.|+-|.....
T Consensus       255 -~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  255 -KEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             -cCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence             3569999999985 89999999999999998864333333335667777777765555577788999999987643

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.2e-22  Score=184.31  Aligned_cols=283  Identities=18%  Similarity=0.209  Sum_probs=194.0

Q ss_pred             ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe-----EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424          280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-----CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR  353 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~-----~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~  353 (645)
                      +..++||.+.|++++|+.+| +|++++.|++|++|+++...     +++..-.-+..+.+.|.|....+++++-...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            56788999999999999998 99999999999999987532     2222112235678899994344555566667899


Q ss_pred             EEeCCCCc----E---EE------eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          354 IWGVCEKR----V---VD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       354 vwd~~~~~----~---~~------~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      +|.+...+    .   +.      ...|.-.+..+-...++.++++++.|..|.+|++++..+.  .+..      ....
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~--~idt------nq~~  230 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQ--SIDT------NQSS  230 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceee--eecc------cccc
Confidence            99764322    1   11      1234445666666778899999999999999999954322  2221      1245


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEEC--------CcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDG--------VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~--------~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      -+..+.+|+| +++++++.--.|++|..        .+..+.+...+|...|..++|+++...++|.|.||+++|||.+-
T Consensus       231 n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  231 NYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             ccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            5678899998 89999999999999983        24456667777999999999999999999999999999999863


Q ss_pred             CCc----CC--Cc------ccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCcccc
Q 006424          493 LCF----PS--SK------QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSL  560 (645)
Q Consensus       493 ~~~----~~--~~------~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  560 (645)
                      ...    +.  ..      ........+..+|+|.++++++..+-..+.+-...            .-.....-|+..+.
T Consensus       310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~------------~~~~~e~~h~~~Is  377 (420)
T KOG2096|consen  310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK------------DYPELEDIHSTTIS  377 (420)
T ss_pred             eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc------------cchhHHHhhcCcee
Confidence            211    00  00      01111123345566666666554443333321111            01112344677899


Q ss_pred             CccccCCCCCCcCCCCCCCcCCCCC
Q 006424          561 GSWFSNDGPCRGSATWPAEKLPLWD  585 (645)
Q Consensus       561 ~~~fs~dg~~l~s~s~~d~~i~iWd  585 (645)
                      +++|++||+++++..  |..+++.-
T Consensus       378 ~is~~~~g~~~atcG--dr~vrv~~  400 (420)
T KOG2096|consen  378 SISYSSDGKYIATCG--DRYVRVIR  400 (420)
T ss_pred             eEEecCCCcEEeeec--ceeeeeec
Confidence            999999999998876  56777664

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=6e-22  Score=186.57  Aligned_cols=252  Identities=23%  Similarity=0.324  Sum_probs=195.3

Q ss_pred             ccccCcEEEEEECCCCC--EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          197 QAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       197 ~~H~~~V~~l~fspdg~--~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      -+|.+.|+.+.-++-|+  +.|+=+..|.|.||++...-..   +...+                    .      .+..
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~---l~~~~--------------------~------~~~~  198 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNA---LSEPG--------------------L------EVKD  198 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhh---hcCcc--------------------c------cccc
Confidence            36889999998888664  6666788999999998752100   00000                    0      0001


Q ss_pred             ccCCCceeeccCccCeEEEEEcC--CCeEEEEeCCCcEEEEecCCCeEEE----EecCCCcEEEEEEeeCCCCEEEEEeC
Q 006424          275 IEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLN----VFDHHNYVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~--~~~l~s~s~dg~I~iwd~~~~~~~~----~~~~~~~v~~l~~~p~~~~~l~s~s~  348 (645)
                      ...+++.++.+|...=+.|+|||  .|.|+||..-+.|++|...++.-..    ..+|+..|..++|+|.....|++||.
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence            13678899999999999999998  4689999999999999998875432    23599999999999988889999999


Q ss_pred             CCcEEEEeCCCC---cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee--eeEEeeccccccCCCCeEE
Q 006424          349 DGKVRIWGVCEK---RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK--LEKVDFHDRKKTSGNKITG  423 (645)
Q Consensus       349 dg~i~vwd~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~i~~  423 (645)
                      ||+|+|||+|.+   .++....|.+.|+.++|+.+-.+||+|+.||+++|||++..+..  +..+..      |..+|++
T Consensus       279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~------Hk~pIts  352 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY------HKAPITS  352 (440)
T ss_pred             CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe------ccCCeeE
Confidence            999999999987   56677899999999999998889999999999999999976543  223333      3589999


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEEECCc------------------ceeeEeecCCCCCeEEEEEecCC-CEEEEEeCCc
Q 006424          424 IQFSRDESQRIMITSEDSKLRILDGVD------------------VIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDC  483 (645)
Q Consensus       424 i~~s~~g~~~l~~~s~dg~I~iwd~~~------------------~~~~~~~~~~~~~i~~v~~sp~~-~~l~t~s~dg  483 (645)
                      +.|+|.....+++++.|.+|.+||+.-                  +-+.+..+.....+..+.|++.- .+|++.+.||
T Consensus       353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence            999998778999999999999999541                  01123334445677888998864 4777777777

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=6e-21  Score=175.41  Aligned_cols=250  Identities=23%  Similarity=0.364  Sum_probs=186.1

Q ss_pred             ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      .+|.+-|+|+.|.+.|+.+|||+.|++|+|||..+...                                         .
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------------------------~   48 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----------------------------------------T   48 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------------------------c
Confidence            47999999999999999999999999999999754211                                         1


Q ss_pred             CCCceeeccCccCeEEEEEcC-C-C-eEEEEeCCCcEEEEecCC------C-eE--EEEe-cCCCcEEEEEEeeCC-CCE
Q 006424          277 ESPLQELHGHKGDVLDLAWSN-S-N-YLLSCSMDKTVRMWQVGC------N-QC--LNVF-DHHNYVTCVQFNPID-DNY  342 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~-~-~-~l~s~s~dg~I~iwd~~~------~-~~--~~~~-~~~~~v~~l~~~p~~-~~~  342 (645)
                      .......+.|.+.|..+.|.+ . | .+++|+.|+++.||.=..      + +-  ..++ ...+.|+.+.|.|.. |-.
T Consensus        49 W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk  128 (361)
T KOG2445|consen   49 WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK  128 (361)
T ss_pred             eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceE
Confidence            233466788999999999975 3 4 799999999999996421      1 11  1122 466789999999832 446


Q ss_pred             EEEEeCCCcEEEEeCCCCcEE-E-------------eeccCCCeEEEEEccC---CCEEEEEecC-----CeEEEEEecC
Q 006424          343 FISGSIDGKVRIWGVCEKRVV-D-------------WADVRDVISAICYIPD---GKGFIVGSIT-----GTCHFYKASG  400 (645)
Q Consensus       343 l~s~s~dg~i~vwd~~~~~~~-~-------------~~~~~~~v~~l~~sp~---g~~l~~g~~d-----g~i~iwd~~~  400 (645)
                      |++++.||.+|||+.-...-+ .             ...+.....|+.|+|.   ..+||+|+.+     +.++||....
T Consensus       129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e  208 (361)
T KOG2445|consen  129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE  208 (361)
T ss_pred             EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence            899999999999987542211 1             1134556788999983   4688888876     5788998765


Q ss_pred             CceeeeEEeeccccccCCCCeEEEEEcCCC---CcEEEEEECCCeEEEEECCcc-------------------eeeE-ee
Q 006424          401 NDLKLEKVDFHDRKKTSGNKITGIQFSRDE---SQRIMITSEDSKLRILDGVDV-------------------IHKF-KG  457 (645)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g---~~~l~~~s~dg~I~iwd~~~~-------------------~~~~-~~  457 (645)
                      .......+   .....+..+|+.++|.|+-   ..+|++++.|| |+||.+...                   +... ..
T Consensus       209 ~~rKw~kv---a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~  284 (361)
T KOG2445|consen  209 NGRKWLKV---AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL  284 (361)
T ss_pred             Ccceeeee---hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence            54332211   1223567999999999972   25789999999 999986521                   1111 23


Q ss_pred             cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          458 LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       458 ~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      ..|.+.|..+.|.-.|..|++.|+||+|++|...
T Consensus       285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            4588999999999999999999999999999754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.3e-21  Score=178.54  Aligned_cols=233  Identities=19%  Similarity=0.286  Sum_probs=188.6

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .|..++.+++|.+ ...+++|+.||.|+.+|+.++                                             
T Consensus        52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~---------------------------------------------   85 (323)
T KOG1036|consen   52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG---------------------------------------------   85 (323)
T ss_pred             ecCCceeeeeccC-CceEEEeccCceEEEEEecCC---------------------------------------------
Confidence            4999999999997 457999999999999999863                                             


Q ss_pred             CCceeeccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424          278 SPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  356 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd  356 (645)
                       ....+..|...|.|+.+++. +.+++||.|++|++||.+.......+.....|.|+..   .++.|++|+.|..+.+||
T Consensus        86 -~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyD  161 (323)
T KOG1036|consen   86 -NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYD  161 (323)
T ss_pred             -cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec---cCCEEEEeecCceEEEEE
Confidence             23456679999999999975 6999999999999999998777778887889999988   578999999999999999


Q ss_pred             CCCCcEEE---eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce-eeeEEeecccccc-----CCCCeEEEEEc
Q 006424          357 VCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-KLEKVDFHDRKKT-----SGNKITGIQFS  427 (645)
Q Consensus       357 ~~~~~~~~---~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~-----~~~~i~~i~~s  427 (645)
                      ++......   ....+..+.|+++.|++.-+++++-||.|.+=.+..... ......+..|...     ...+|++++|+
T Consensus       162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh  241 (323)
T KOG1036|consen  162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH  241 (323)
T ss_pred             cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence            99865433   445567899999999999999999999988766654411 1112222222111     13478999999


Q ss_pred             CCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC
Q 006424          428 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD  481 (645)
Q Consensus       428 ~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~  481 (645)
                      |-. ..+++|+.||.|.+||+....+....+.....|.+++|+.+|..||++++
T Consensus       242 p~~-~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  242 PIH-GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ccc-ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            984 79999999999999998866665666556778999999999999999974

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.1e-20  Score=188.88  Aligned_cols=376  Identities=16%  Similarity=0.194  Sum_probs=253.0

Q ss_pred             ccccccccccc-CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          190 LYTSQEIQAHK-GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       190 ~~~~~~l~~H~-~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      .+...++.++. +.|-+++|+ ++..|.+.+.+|.|.-||+.+                                     
T Consensus        58 w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~-------------------------------------   99 (691)
T KOG2048|consen   58 WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT-------------------------------------   99 (691)
T ss_pred             ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc-------------------------------------
Confidence            34555666765 489999999 555788999999999999987                                     


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEE
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~  344 (645)
                              .++...+....+.|++++.+|.+ .++.|+.||.+...+...+......   ...+.|.+++|+| ++..++
T Consensus       100 --------lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~  170 (691)
T KOG2048|consen  100 --------LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIA  170 (691)
T ss_pred             --------CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEE
Confidence                    45566777788999999999987 8889999998888888877765443   2568999999999 899999


Q ss_pred             EEeCCCcEEEEeCCCCcEEE-----eecc----CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc
Q 006424          345 SGSIDGKVRIWGVCEKRVVD-----WADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  415 (645)
Q Consensus       345 s~s~dg~i~vwd~~~~~~~~-----~~~~----~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  415 (645)
                      .|+.||.|++||...+....     +...    ..-|.++.|-.++ .+++|...|+|.+||.....+...       ..
T Consensus       171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS-------~~  242 (691)
T KOG2048|consen  171 GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQS-------HS  242 (691)
T ss_pred             ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhh-------hh
Confidence            99999999999999877655     2222    2346777777544 799999999999999987765322       22


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce----eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          416 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       416 ~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      .|...|.+++..+++ ..+++++.|+.|.-|......    .......|...+.+++..++  .+++|+.|+.+.+-...
T Consensus       243 ~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  243 CHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR  319 (691)
T ss_pred             hhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence            345789999999997 799999999999888754321    22223446667788777655  67777777666554332


Q ss_pred             C------------------------------------------CC----------cCCCcccCCcceeeeeecCCcEEEE
Q 006424          492 E------------------------------------------LC----------FPSSKQKNSVRSCEHFFSEGVSVAV  519 (645)
Q Consensus       492 ~------------------------------------------~~----------~~~~~~~~~~~~~~~~~~~g~~~~v  519 (645)
                      .                                          .-          ...........+|...+|+|...++
T Consensus       320 ~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~  399 (691)
T KOG2048|consen  320 EFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAI  399 (691)
T ss_pred             ccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEE
Confidence            2                                          10          0000111223334444555554444


Q ss_pred             ec---------CC--------------------------CCccccccCCCCccccCcccccc--cc-----CC--ccCCC
Q 006424          520 QW---------PG--------------------------IGTEQKSLCSSSLRDCSQKWDNL--ET-----AP--WIRDS  555 (645)
Q Consensus       520 ~~---------s~--------------------------~~~~l~~~~~~~~~~~~~~w~~~--~~-----~~--~~~~~  555 (645)
                      .-         .|                          |+..++....     ...-|..+  +.     ..  .....
T Consensus       400 st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~-----~~~~le~~el~~ps~kel~~~~~~~~  474 (691)
T KOG2048|consen  400 STVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSK-----NIFSLEEFELETPSFKELKSIQSQAK  474 (691)
T ss_pred             eeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEec-----ccceeEEEEecCcchhhhhccccccC
Confidence            32         11                          1111110000     00111110  00     00  11122


Q ss_pred             CccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeE
Q 006424          556 ERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKT  635 (645)
Q Consensus       556 ~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iri  635 (645)
                      ...+..++.|+||++++.++- .+.|.+|++.+.+..        .+ ...........++.|.+-..||-+..|+.+.=
T Consensus       475 ~~~I~~l~~SsdG~yiaa~~t-~g~I~v~nl~~~~~~--------~l-~~rln~~vTa~~~~~~~~~~lvvats~nQv~e  544 (691)
T KOG2048|consen  475 CPSISRLVVSSDGNYIAAIST-RGQIFVYNLETLESH--------LL-KVRLNIDVTAAAFSPFVRNRLVVATSNNQVFE  544 (691)
T ss_pred             CCcceeEEEcCCCCEEEEEec-cceEEEEEcccceee--------cc-hhccCcceeeeeccccccCcEEEEecCCeEEE
Confidence            345777899999999999886 899999999988311        11 11222444456677766778888999999999


Q ss_pred             EEe
Q 006424          636 FHN  638 (645)
Q Consensus       636 w~~  638 (645)
                      |++
T Consensus       545 fdi  547 (691)
T KOG2048|consen  545 FDI  547 (691)
T ss_pred             Eec
Confidence            988

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=9e-22  Score=197.04  Aligned_cols=295  Identities=18%  Similarity=0.298  Sum_probs=205.2

Q ss_pred             EEEECCC---CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          205 TLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       205 ~l~fspd---g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      +..|++-   ...|+.+.+||.|.++|....                                       .+..+...+.
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~---------------------------------------~fr~ee~~lk   94 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSI---------------------------------------VFRLEERQLK   94 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhh---------------------------------------hcchhhhhhc
Confidence            3667653   348999999999999998762                                       1222344566


Q ss_pred             eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE---ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424          282 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  357 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~  357 (645)
                      ....|...|.++.|-|.. .|++++.|.++++||+++.++...   ++|...|.+++|.|.+...|++|+.||.|.|||+
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            777899999999999954 899999999999999999888765   4799999999999988899999999999999999


Q ss_pred             CCCcEE----------------------------EeeccCCCeEE---EEEccCCCEEEEEec-CCeEEEEEecCCceee
Q 006424          358 CEKRVV----------------------------DWADVRDVISA---ICYIPDGKGFIVGSI-TGTCHFYKASGNDLKL  405 (645)
Q Consensus       358 ~~~~~~----------------------------~~~~~~~~v~~---l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~  405 (645)
                      +....-                            ....+...|.+   +.+..|...||+++. |+.|+|||++......
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence            753310                            01112223444   445578888888877 9999999999776544


Q ss_pred             eEEeeccc-c---ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc----ceeeEeecCCCCCeEEEEEecCCCEEE
Q 006424          406 EKVDFHDR-K---KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHII  477 (645)
Q Consensus       406 ~~~~~~~~-~---~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~i~~v~~sp~~~~l~  477 (645)
                      ........ .   ......++++.....| .+|++.+.|+.|++|++..    +...+.+......-..-..+|++.+++
T Consensus       255 r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~  333 (720)
T KOG0321|consen  255 RQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL  333 (720)
T ss_pred             ccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence            32111110 0   1113457788888887 6677777799999999763    333444433333333445689999999


Q ss_pred             EEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc-cccccCCCCccccCccccccccCCc
Q 006424          478 SIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT-EQKSLCSSSLRDCSQKWDNLETAPW  551 (645)
Q Consensus       478 t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~-~l~~~~~~~~~~~~~~w~~~~~~~~  551 (645)
                      +|+.|...++|.+...+.+....         ..+.-.+..|.|.|... .++++..|   ..+.+|+.......
T Consensus       334 SgSsd~~ayiw~vs~~e~~~~~l---------~Ght~eVt~V~w~pS~~t~v~TcSdD---~~~kiW~l~~~l~e  396 (720)
T KOG0321|consen  334 SGSSDEQAYIWVVSSPEAPPALL---------LGHTREVTTVRWLPSATTPVATCSDD---FRVKIWRLSNGLEE  396 (720)
T ss_pred             ccCCCcceeeeeecCccCChhhh---------hCcceEEEEEeeccccCCCceeeccC---cceEEEeccCchhh
Confidence            99999999999999875433221         22333467888876543 23333443   33566766444433

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=2.8e-20  Score=187.78  Aligned_cols=252  Identities=15%  Similarity=0.148  Sum_probs=179.3

Q ss_pred             ccccccccCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      .+.+.+|. .+.+++|+|+|+.+ ++++.++.|++||..++.                                      
T Consensus        24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~--------------------------------------   64 (300)
T TIGR03866        24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE--------------------------------------   64 (300)
T ss_pred             EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCc--------------------------------------
Confidence            34455444 36789999999976 567789999999988632                                      


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEE-EEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~-s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                             ....+..+.. +..++|+|++ .++ +++.|+.|++||+.+++.+..+.+...+.+++|+| +++++++++.+
T Consensus        65 -------~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~  135 (300)
T TIGR03866        65 -------VIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSET  135 (300)
T ss_pred             -------EEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecC
Confidence                   2233333322 4578899987 454 55678999999999988888777666678999999 99999988876


Q ss_pred             C-cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeecccc-ccCCCCeEEEEE
Q 006424          350 G-KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRK-KTSGNKITGIQF  426 (645)
Q Consensus       350 g-~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~  426 (645)
                      + .+.+||..+++..........+.+++|+|+|+++++++ .++.+++||+.+..... .+...... .........+.|
T Consensus       136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~  214 (300)
T TIGR03866       136 TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK-KITFEIPGVHPEAVQPVGIKL  214 (300)
T ss_pred             CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee-eeeecccccccccCCccceEE
Confidence            5 46778998877765444445678899999999886554 68999999998765422 22221100 001123456889


Q ss_pred             cCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEE-eCCccEEEEeCCCCC
Q 006424          427 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELC  494 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~-s~dg~I~iwd~~~~~  494 (645)
                      +|++...+++.+.++.+.+||..+....... .+...+.+++|+|+|++|+++ +.+|.|++||+.+++
T Consensus       215 s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       215 TKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            9998433455566778999998754332221 234578899999999999886 468999999999874

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.9e-22  Score=203.84  Aligned_cols=234  Identities=18%  Similarity=0.329  Sum_probs=180.4

Q ss_pred             CeEEEEEcC--CCeEEEEeCCCcEEEEecCC---CeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE
Q 006424          289 DVLDLAWSN--SNYLLSCSMDKTVRMWQVGC---NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  362 (645)
Q Consensus       289 ~V~~l~~s~--~~~l~s~s~dg~I~iwd~~~---~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~  362 (645)
                      .+..+.|..  +++|++++..|.|.+||+..   .+.+..| .|...++++.|++...++|++|+.||+|++||++....
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            455677873  35899999999999999976   4444455 49999999999998999999999999999999998665


Q ss_pred             EE-eeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424          363 VD-WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  440 (645)
Q Consensus       363 ~~-~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d  440 (645)
                      .. +.+....|..+.|+| .+..|+++...|.+++||++.......      ....|.++|.|+.|+|++ .+||+|++|
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~------k~~AH~GpV~c~nwhPnr-~~lATGGRD  241 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK------KLTAHNGPVLCLNWHPNR-EWLATGGRD  241 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH------HhhcccCceEEEeecCCC-ceeeecCCC
Confidence            44 566778899999999 577999999999999999997765332      234456999999999986 899999999


Q ss_pred             CeEEEEECCcc-eeeEeecCCCCCeEEEEEecCCCE-EEEEe--CCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcE
Q 006424          441 SKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKH-IISIG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS  516 (645)
Q Consensus       441 g~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~~-l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~  516 (645)
                      +.|+|||.... ...........++..+.|-|...+ ||+++  .|-.|+|||+..+..+...         ...+...+
T Consensus       242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t---------~~eH~~~v  312 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT---------FLEHTDSV  312 (839)
T ss_pred             ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccccee---------eeccCccc
Confidence            99999997632 222222235678999999998764 66665  4889999999877443322         22345566


Q ss_pred             EEEecC-CCCccccccCCCCccc
Q 006424          517 VAVQWP-GIGTEQKSLCSSSLRD  538 (645)
Q Consensus       517 ~~v~~s-~~~~~l~~~~~~~~~~  538 (645)
                      ..++|. .|...+|+++.|+...
T Consensus       313 t~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  313 TGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             cceeccCCCceeeEeecCccHHH
Confidence            777885 4666777777776543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=1.2e-21  Score=195.43  Aligned_cols=155  Identities=15%  Similarity=0.240  Sum_probs=119.1

Q ss_pred             eEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424          372 ISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  450 (645)
Q Consensus       372 v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~  450 (645)
                      |+.+.|+| |...|++++.||.|++|.+..+...-...........|...|+++.|+|-....|++++.|.+|++||+..
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            66778888 66789999999999999998766544333333334456789999999997667999999999999999987


Q ss_pred             ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccc
Q 006424          451 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS  530 (645)
Q Consensus       451 ~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~  530 (645)
                      .....+...|.+.|.+++|||+|+.+|+.+.||+|++|+-.+.+.+.......+-        +.---+.|.-+|.++..
T Consensus       710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg--------tRgARi~wacdgr~viv  781 (1012)
T KOG1445|consen  710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVG--------TRGARILWACDGRIVIV  781 (1012)
T ss_pred             hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCcc--------CcceeEEEEecCcEEEE
Confidence            6666666669999999999999999999999999999999887655554333221        11223556667777665


Q ss_pred             cCCC
Q 006424          531 LCSS  534 (645)
Q Consensus       531 ~~~~  534 (645)
                      .+-|
T Consensus       782 ~Gfd  785 (1012)
T KOG1445|consen  782 VGFD  785 (1012)
T ss_pred             eccc
Confidence            5554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=2.1e-21  Score=192.83  Aligned_cols=289  Identities=17%  Similarity=0.338  Sum_probs=210.6

Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee----------eeEecCCCCc--ccCCCCceEEecc
Q 006424          191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS----------CKSFTDDGGF--GSNAKEGKIKFGK  258 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~~  258 (645)
                      .+...++||++.|.|+...|.|.+|++|+.||+|+||.+.++.+.          +..|.+....  ++.+....+.+..
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            355668999999999999999999999999999999999998774          3445555433  2222222222221


Q ss_pred             cCCC-cc-------eeecC---------CCceecc-----CCCceeeccCccCeEEEEEcCCC-eEEEEeCC---CcEEE
Q 006424          259 KKSS-HV-------PVVIP---------DEVFQIE-----ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRM  312 (645)
Q Consensus       259 ~~~~-~~-------~~~~~---------~~~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~d---g~I~i  312 (645)
                      ..-+ ..       .....         ...|.-.     ...++..-.|...|..+.|+..| +|++...+   ..|.|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence            1111 00       00000         0122211     12234555689999999999887 88876553   57999


Q ss_pred             EecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecC
Q 006424          313 WQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSIT  390 (645)
Q Consensus       313 wd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~d  390 (645)
                      +++.......-|. ..+.|.++.|+| ...+|++++. ..|++||+....++. +......|..++.+|.|..|++|+.|
T Consensus       551 HQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d  628 (733)
T KOG0650|consen  551 HQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD  628 (733)
T ss_pred             EecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence            9998777766664 667899999999 7777777764 689999998766544 55566789999999999999999999


Q ss_pred             CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC-------c----ceeeEeecC
Q 006424          391 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-------D----VIHKFKGLP  459 (645)
Q Consensus       391 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-------~----~~~~~~~~~  459 (645)
                      +.+..||+.-...+......|      ...+++++|++.- .++++|+.||++.|+...       +    ++..+.++.
T Consensus       629 ~k~~WfDldlsskPyk~lr~H------~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~  701 (733)
T KOG0650|consen  629 KKMCWFDLDLSSKPYKTLRLH------EKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE  701 (733)
T ss_pred             CeeEEEEcccCcchhHHhhhh------hhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence            999999998776666555444      4789999999985 799999999999998632       1    223333322


Q ss_pred             --CCCCeEEEEEecCCCEEEEEeCCccEEEE
Q 006424          460 --KSGSQMSASFTTTGKHIISIGDDCRVYVW  488 (645)
Q Consensus       460 --~~~~i~~v~~sp~~~~l~t~s~dg~I~iw  488 (645)
                        ....|..+.|+|...+|++++.||+|++|
T Consensus       702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eecccceEeecccCCCceEEecCCCceEEee
Confidence              23458899999999999999999999998

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.88  E-value=9.4e-22  Score=198.77  Aligned_cols=201  Identities=17%  Similarity=0.340  Sum_probs=169.2

Q ss_pred             CCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEE-EEEeeCCCCEEEEEeCCCcEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTC-VQFNPIDDNYFISGSIDGKVR  353 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~-l~~~p~~~~~l~s~s~dg~i~  353 (645)
                      +..+.+.||...|..++..+...++++|+||++++|+-..++.+...   +|.+.|.+ +++.+.++..+++|+.|.++.
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~   84 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII   84 (745)
T ss_pred             eeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence            44578899999999999887779999999999999998777666532   46776766 888764666799999999999


Q ss_pred             EEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424          354 IWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       354 vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                      +|...+.... .+.+|...|++++...++. +++|+-|.++++|-.......         ..+|...|..+..-|++  
T Consensus        85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~---------l~gH~asVWAv~~l~e~--  152 (745)
T KOG0301|consen   85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS---------LQGHTASVWAVASLPEN--  152 (745)
T ss_pred             EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc---------cCCcchheeeeeecCCC--
Confidence            9999887655 4789999999999888887 999999999999987643221         33457899999999985  


Q ss_pred             EEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          433 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       433 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .+++|+.|.+|++|...+...++.+  |...|.++++-+++ .+++++.||.|+.|++...
T Consensus       153 ~~vTgsaDKtIklWk~~~~l~tf~g--HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge  210 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKGGTLLKTFSG--HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE  210 (745)
T ss_pred             cEEeccCcceeeeccCCchhhhhcc--chhheeeeEEecCC-CeEeecCCceEEEEeccCc
Confidence            8999999999999999888999988  89999999998764 5778999999999999544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.8e-21  Score=187.38  Aligned_cols=252  Identities=21%  Similarity=0.301  Sum_probs=187.1

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeE
Q 006424          212 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL  291 (645)
Q Consensus       212 g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  291 (645)
                      |+|+|.|+.|..|.|||+.-.......+...               ...+         +.....++.-..-.+|+..|.
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LG---------------s~~s---------k~~~k~~k~~~~~~gHTdavl  247 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLG---------------SKAS---------KKKKKKGKRSNSASGHTDAVL  247 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeec---------------hhhh---------hhhhhhcccccccccchHHHH
Confidence            6799999999999999986432221111100               0000         000000111223457999999


Q ss_pred             EEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-EEEeec
Q 006424          292 DLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWAD  367 (645)
Q Consensus       292 ~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~  367 (645)
                      +++|+..  +.|+|||.|.+|++||+.++++...+. |.+.|.++.|+|..+.+|++|+.|++|.+.|.|... .-..-.
T Consensus       248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk  327 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK  327 (463)
T ss_pred             HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence            9999864  589999999999999999999999997 888999999999889999999999999999998522 222334


Q ss_pred             cCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424          368 VRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  446 (645)
Q Consensus       368 ~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw  446 (645)
                      ..+.|-.+.|+|.. ..+++++.||+++-+|++....+...+..|      ...|.++++++.-+.++++++.|+.|++|
T Consensus       328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH------d~~ISgl~~n~~~p~~l~t~s~d~~Vklw  401 (463)
T KOG0270|consen  328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH------DDEISGLSVNIQTPGLLSTASTDKVVKLW  401 (463)
T ss_pred             eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec------cCCcceEEecCCCCcceeeccccceEEEE
Confidence            56778899999955 477888999999999999887666555544      47999999999888899999999999999


Q ss_pred             ECCc--ceeeEeecCCCCCeEEEEEecCCC-EEEEEeCCccEEEEeCCCC
Q 006424          447 DGVD--VIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       447 d~~~--~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s~dg~I~iwd~~~~  493 (645)
                      ++..  ..........-+...|+++.|+-. +++.|+..+.++|||+.+.
T Consensus       402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             eecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            9652  211111111233466777777654 5777888889999999876

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=7.5e-23  Score=207.38  Aligned_cols=235  Identities=24%  Similarity=0.414  Sum_probs=203.7

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      +.+-.|...|.|+..-..++.+++|+.|..+.+|.+..                                          
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k------------------------------------------   59 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK------------------------------------------   59 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccC------------------------------------------
Confidence            45668999999999977889999999999999998875                                          


Q ss_pred             eccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                         ...+..+.+|+.+|.++.|+++. .|++|+.+|+|++||++.++.++++ +|...+..+.|+| -+.++++|+.|+.
T Consensus        60 ---p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd  135 (825)
T KOG0267|consen   60 ---PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTD  135 (825)
T ss_pred             ---CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEecccccccc
Confidence               33355688999999999999875 8889999999999999999888876 5999999999999 8999999999999


Q ss_pred             EEEEeCC-CCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          352 VRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       352 i~vwd~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      +++||.+ .|....+.+|...+..+.|+|+|++++.|+.|..+++||+..++....       ...|...+.++.|+|..
T Consensus       136 ~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e-------f~~~e~~v~sle~hp~e  208 (825)
T KOG0267|consen  136 LKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE-------FKSHEGKVQSLEFHPLE  208 (825)
T ss_pred             ceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc-------cccccccccccccCchh
Confidence            9999999 566666778999999999999999999999999999999987775332       22345788999999996


Q ss_pred             CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 006424          431 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD  482 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d  482 (645)
                       .+++.|+.|++|++||+++....-.+......|.+..|+|+++.+++|...
T Consensus       209 -~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  209 -VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             -hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence             889999999999999998766666666668899999999999999988654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=6.1e-20  Score=185.29  Aligned_cols=226  Identities=14%  Similarity=0.168  Sum_probs=163.0

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeE
Q 006424          212 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL  291 (645)
Q Consensus       212 g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  291 (645)
                      +..+++++.|+.|++||+.++                                             +.+..+.+|. .+.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~---------------------------------------------~~~~~~~~~~-~~~   34 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATL---------------------------------------------EVTRTFPVGQ-RPR   34 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCC---------------------------------------------ceEEEEECCC-CCC
Confidence            357889999999999999763                                             3345555443 367


Q ss_pred             EEEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEE-EeCCCcEEEEeCCCCcEEEeecc
Q 006424          292 DLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGKVRIWGVCEKRVVDWADV  368 (645)
Q Consensus       292 ~l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s-~s~dg~i~vwd~~~~~~~~~~~~  368 (645)
                      +++|+|++ .+ ++++.++.|++||..+++....+.....+..++|+| +++.+++ ++.++.+++||+++.+.+.....
T Consensus        35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~  113 (300)
T TIGR03866        35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPV  113 (300)
T ss_pred             ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence            89999987 44 567788999999999998877765444567889999 7776655 45689999999998877665555


Q ss_pred             CCCeEEEEEccCCCEEEEEecCC-eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE-EEEECCCeEEEE
Q 006424          369 RDVISAICYIPDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI-MITSEDSKLRIL  446 (645)
Q Consensus       369 ~~~v~~l~~sp~g~~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l-~~~s~dg~I~iw  446 (645)
                      ...+.+++|+|+|++++++..++ .+.+||..+...... .. .      .....++.|+|+| .++ +++..++.|++|
T Consensus       114 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~-~~-~------~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~  184 (300)
T TIGR03866       114 GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN-VL-V------DQRPRFAEFTADG-KELWVSSEIGGTVSVI  184 (300)
T ss_pred             CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE-EE-c------CCCccEEEECCCC-CEEEEEcCCCCEEEEE
Confidence            55678999999999999988775 467788876543221 11 1      1345779999998 555 555569999999


Q ss_pred             ECCcce--eeEeecC-----CCCCeEEEEEecCCCEEEE-EeCCccEEEEeCCCC
Q 006424          447 DGVDVI--HKFKGLP-----KSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDEL  493 (645)
Q Consensus       447 d~~~~~--~~~~~~~-----~~~~i~~v~~sp~~~~l~t-~s~dg~I~iwd~~~~  493 (645)
                      |.....  ..+....     .......++|+|++++++. .+.++.|.+||+.++
T Consensus       185 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       185 DVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY  239 (300)
T ss_pred             EcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            987542  2222111     1112356889999998655 455778999998765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.88  E-value=2.9e-21  Score=187.84  Aligned_cols=261  Identities=17%  Similarity=0.289  Sum_probs=208.4

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .|..-|.++..|...+++.||+. |.|+|||+....                                          +.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg------------------------------------------~k  453 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG------------------------------------------NK  453 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCC------------------------------------------CC
Confidence            58888999999999999999987 459999997521                                          12


Q ss_pred             CCceeecc--CccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          278 SPLQELHG--HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       278 ~~~~~l~~--h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                      .++..+..  ....|.++...||+ .|++|+.-.++.|||+....+.-..+   ..-.+++++.+| |.+..+++..||.
T Consensus       454 ~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGn  532 (705)
T KOG0639|consen  454 SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGN  532 (705)
T ss_pred             CccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCc
Confidence            23333332  45678999999998 89999999999999997655433222   233678899999 9999999999999


Q ss_pred             EEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          352 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       352 i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      |.|||++...++. +.+|.+.+.||.+++||..|.+|+-|++|+-||++....... ..+       ...|.++.++|.+
T Consensus       533 I~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq-hdF-------~SQIfSLg~cP~~  604 (705)
T KOG0639|consen  533 IAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-HDF-------SSQIFSLGYCPTG  604 (705)
T ss_pred             EEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh-hhh-------hhhheecccCCCc
Confidence            9999999877665 889999999999999999999999999999999998765432 111       2679999999998


Q ss_pred             CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeee
Q 006424          431 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF  510 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  510 (645)
                       .++++|-..+.+.|...... ..+..+.|...|.++.|++.|+++++.+.|.-+..|...-+....+......+.++.+
T Consensus       605 -dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDI  682 (705)
T KOG0639|consen  605 -DWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI  682 (705)
T ss_pred             -cceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeee
Confidence             89999999999999986543 4566667999999999999999999999999999999987754444433333333333


Q ss_pred             ec
Q 006424          511 FS  512 (645)
Q Consensus       511 ~~  512 (645)
                      +.
T Consensus       683 S~  684 (705)
T KOG0639|consen  683 SF  684 (705)
T ss_pred             cc
Confidence            33

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.3e-21  Score=182.01  Aligned_cols=263  Identities=19%  Similarity=0.275  Sum_probs=196.0

Q ss_pred             ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      +.+..+.+.+|.++|+++.||.++++|++|+.|..+++|++...-.                                  
T Consensus        45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~----------------------------------   90 (609)
T KOG4227|consen   45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV----------------------------------   90 (609)
T ss_pred             cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh----------------------------------
Confidence            3445667889999999999999999999999999999999875210                                  


Q ss_pred             CCCceeccCCCceeec-cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCC---cEEEEEEeeCCCCEE
Q 006424          269 PDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN---YVTCVQFNPIDDNYF  343 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~---~v~~l~~~p~~~~~l  343 (645)
                           ....+++.... .|...|.|++|...+ .+++|+.+++|...|+++.+.+..+.|..   .|+.+..+| ..+.|
T Consensus        91 -----~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~  164 (609)
T KOG4227|consen   91 -----RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTL  164 (609)
T ss_pred             -----hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceE
Confidence                 00134555444 456899999998766 89999999999999999999999998665   999999999 68999


Q ss_pred             EEEeCCCcEEEEeCCCCc----EEEeeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424          344 ISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  418 (645)
Q Consensus       344 ~s~s~dg~i~vwd~~~~~----~~~~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  418 (645)
                      ++.+.++.|.+||.+...    ++..........++.|+|.. .+|++.+..+-+-+||.+....+..............
T Consensus       165 ~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~  244 (609)
T KOG4227|consen  165 IVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQEN  244 (609)
T ss_pred             EEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccc
Confidence            999999999999998644    44455667788999999955 5788889999999999987665543222111111112


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-ceeeEeec------CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          419 NKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGL------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~------~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      ..-.++.|+|+| ..+++--....-.+||+-. ....++..      -+...+.+++|.-| ..+++|+++-.|++|.+.
T Consensus       245 ~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP  322 (609)
T KOG4227|consen  245 TEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLP  322 (609)
T ss_pred             hhhhheeeCCCC-CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecC
Confidence            334678899998 5566655555556677543 33333332      12335677888655 449999999999999986


Q ss_pred             CC
Q 006424          492 EL  493 (645)
Q Consensus       492 ~~  493 (645)
                      ..
T Consensus       323 ~~  324 (609)
T KOG4227|consen  323 RA  324 (609)
T ss_pred             CC
Confidence            54

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.7e-21  Score=185.63  Aligned_cols=232  Identities=18%  Similarity=0.205  Sum_probs=184.6

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      -.++|.|++-+|+|.+|+.|+..|.+++|.+.+                                             +.
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss---------------------------------------------G~  114 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSS---------------------------------------------GI  114 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEecc---------------------------------------------cc
Confidence            457899999999999999999999999999998                                             56


Q ss_pred             CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC---------CCeEEEEec-CCCcEEEEEEeeC-CCCEEEEE
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---------CNQCLNVFD-HHNYVTCVQFNPI-DDNYFISG  346 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~---------~~~~~~~~~-~~~~v~~l~~~p~-~~~~l~s~  346 (645)
                      .+..+.+|-..|+|+.|+.|+ +++|||.||.|.+|++.         +-++...+. |.-+|+.+...+. ...+++++
T Consensus       115 LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta  194 (476)
T KOG0646|consen  115 LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA  194 (476)
T ss_pred             HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe
Confidence            677888999999999999988 99999999999999862         234556664 8889999988762 34589999


Q ss_pred             eCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-----EEeec----cccccC
Q 006424          347 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-----KVDFH----DRKKTS  417 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-----~~~~~----~~~~~~  417 (645)
                      |.|.++++||+..+.++.....+..+++++.+|.++.+++|+.+|.|.+.++........     .....    ....+|
T Consensus       195 S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh  274 (476)
T KOG0646|consen  195 SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH  274 (476)
T ss_pred             cCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence            999999999999999999888899999999999999999999999999988764431110     00000    001223


Q ss_pred             C--CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEE
Q 006424          418 G--NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI  476 (645)
Q Consensus       418 ~--~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l  476 (645)
                      .  ..|+|++.+-|| .+|++|+.||.|+|||.......-......++|+.+.+.|-.+-.
T Consensus       275 ~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~  334 (476)
T KOG0646|consen  275 ENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGI  334 (476)
T ss_pred             cCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccce
Confidence            3  499999999998 899999999999999976432222222257789999886654333

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=1.6e-21  Score=189.65  Aligned_cols=238  Identities=22%  Similarity=0.367  Sum_probs=200.4

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      -...|.++...|||+.|++|+.-.++.|||+.....                                           .
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp-------------------------------------------r  500 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP-------------------------------------------R  500 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCc-------------------------------------------c
Confidence            346799999999999999999999999999986321                                           1


Q ss_pred             CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  356 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd  356 (645)
                      ....+..-.-...+++.+||. ..++|..||.|.|||+.+...++.|. |.+.+.||..++ +|..|-+|+.|.+|+.||
T Consensus       501 ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWD  579 (705)
T KOG0639|consen  501 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWD  579 (705)
T ss_pred             hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehh
Confidence            112233334457788889986 78899999999999999999999885 999999999999 999999999999999999


Q ss_pred             CCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          357 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       357 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      +++++........+.|.++.++|.+.++++|-.++.+.+........  ..  ++.    |..-|.++.|.+.| +++++
T Consensus       580 lregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k--yq--lhl----heScVLSlKFa~cG-kwfvS  650 (705)
T KOG0639|consen  580 LREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK--YQ--LHL----HESCVLSLKFAYCG-KWFVS  650 (705)
T ss_pred             hhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc--ee--ecc----cccEEEEEEecccC-ceeee
Confidence            99999888778888999999999999999999999988877665432  12  222    24789999999998 89999


Q ss_pred             EECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          437 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       437 ~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      .+.|+.+..|..--....|... ....|.++.+|.|.++|+||+.|....+|.+
T Consensus       651 tGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  651 TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9999999999876555566654 5678999999999999999999998888865

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=5e-21  Score=170.41  Aligned_cols=210  Identities=20%  Similarity=0.315  Sum_probs=168.4

Q ss_pred             ccccccccccCcEEEEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          191 YTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fsp--dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      .+..+|.||+++|+.++|-.  .|.+||+++.||.|.||.-.+++                                   
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~-----------------------------------   91 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR-----------------------------------   91 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc-----------------------------------
Confidence            46778999999999999975  79999999999999999987742                                   


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCC---eEEEEeCCCcEEEEecCCC-e-EEE--EecCCCcEEEEEEeeCC--
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCN-Q-CLN--VFDHHNYVTCVQFNPID--  339 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~l~s~s~dg~I~iwd~~~~-~-~~~--~~~~~~~v~~l~~~p~~--  339 (645)
                              .........|...|++++|.|.+   .|++++.||.|.|.+.+.. . ...  .+.|.-.|++++|.|..  
T Consensus        92 --------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   92 --------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             --------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence                    23455677899999999999874   6889999999999998654 1 222  22488899999999831  


Q ss_pred             C-----------CEEEEEeCCCcEEEEeCCCCc---EEEeeccCCCeEEEEEccCC----CEEEEEecCCeEEEEEecCC
Q 006424          340 D-----------NYFISGSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIPDG----KGFIVGSITGTCHFYKASGN  401 (645)
Q Consensus       340 ~-----------~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~v~~l~~sp~g----~~l~~g~~dg~i~iwd~~~~  401 (645)
                      +           +.|++|+.|..|+||+...++   -..+.+|.+.|+.++|.|.-    .+|+++++||++.||..+..
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e  243 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE  243 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence            2           469999999999999998853   23378899999999999953    48999999999999998744


Q ss_pred             ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC
Q 006424          402 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  448 (645)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~  448 (645)
                      ..+.+...++.    ....+..++|+..| +.|++++.|+.|.+|--
T Consensus       244 ~e~wk~tll~~----f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  244 YEPWKKTLLEE----FPDVVWRVSWSLSG-NILAVSGGDNKVTLWKE  285 (299)
T ss_pred             cCccccccccc----CCcceEEEEEeccc-cEEEEecCCcEEEEEEe
Confidence            33222111121    23679999999998 89999999999999973

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.86  E-value=2.6e-20  Score=179.94  Aligned_cols=262  Identities=15%  Similarity=0.202  Sum_probs=197.4

Q ss_pred             cccccccccccCcEEEEEECCCC--CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424          190 LYTSQEIQAHKGCIWTLKFSPDG--RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  267 (645)
Q Consensus       190 ~~~~~~l~~H~~~V~~l~fspdg--~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (645)
                      .......+-|.+.|++++|+|..  +++|+|..-|.|-+||+.+...                                 
T Consensus       176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~---------------------------------  222 (498)
T KOG4328|consen  176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK---------------------------------  222 (498)
T ss_pred             ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC---------------------------------
Confidence            34455667899999999999964  5899999999999999963211                                 


Q ss_pred             cCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCE
Q 006424          268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNY  342 (645)
Q Consensus       268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~  342 (645)
                              +...+..+..|..+|.++.|+|.+  .+++.|+||+|++-|++.+..-..+.   .......+.|+. +...
T Consensus       223 --------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~  293 (498)
T KOG4328|consen  223 --------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRS  293 (498)
T ss_pred             --------ccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCcc
Confidence                    133456778899999999999875  89999999999999998765443332   344677888887 6666


Q ss_pred             EEEEeCCCcEEEEeCCCCcE--EEeeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeee-EEeeccccccCC
Q 006424          343 FISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSG  418 (645)
Q Consensus       343 l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~  418 (645)
                      ++.+..=|...+||++++..  ..+.-|...|++++++|-. .+|++++.|++.+|||++....... .+.    ...|.
T Consensus       294 vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls----t~~Hr  369 (498)
T KOG4328|consen  294 VLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS----TLPHR  369 (498)
T ss_pred             EEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee----ccccc
Confidence            66677667999999998654  3456677799999999955 5789999999999999986544332 111    22345


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCeEEEEECC------cceeeEeecC-C--CCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          419 NKITGIQFSRDESQRIMITSEDSKLRILDGV------DVIHKFKGLP-K--SGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~------~~~~~~~~~~-~--~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                      ..|.++.|||.+.. |++.+.|..|+|||..      .+..++.... +  .-......|.|+..++++|-.-..|-|+|
T Consensus       370 rsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  370 RSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             ceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence            78999999999854 9999999999999973      1222222110 1  11344568999999999999999999999


Q ss_pred             CCCCCcCCC
Q 006424          490 YDELCFPSS  498 (645)
Q Consensus       490 ~~~~~~~~~  498 (645)
                      -..++....
T Consensus       449 ~~~~q~v~e  457 (498)
T KOG4328|consen  449 GNGGQMVCE  457 (498)
T ss_pred             CCCCEEeee
Confidence            888864443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=9.8e-20  Score=176.54  Aligned_cols=202  Identities=24%  Similarity=0.358  Sum_probs=167.0

Q ss_pred             CccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC----
Q 006424          286 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----  359 (645)
Q Consensus       286 h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~----  359 (645)
                      -.++|.+++-+|+| +|+.|+-.|.+++|.+.+|..+..+. |-..|+|+.|+- |+.+|++|+.||.|.+|++..    
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeeccc
Confidence            46789999999999 55566699999999999999988885 888999999999 999999999999999998632    


Q ss_pred             ------CcEEEeeccCCCeEEEEEccCC--CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424          360 ------KRVVDWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       360 ------~~~~~~~~~~~~v~~l~~sp~g--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                            .....+..|.-+|+.+...+.|  .++++++.|.++++||+..+..... +.++       ..+.+++.+|.+ 
T Consensus       159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt-i~fp-------~si~av~lDpae-  229 (476)
T KOG0646|consen  159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT-ITFP-------SSIKAVALDPAE-  229 (476)
T ss_pred             ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE-EecC-------CcceeEEEcccc-
Confidence                  2244578899999999987753  5899999999999999998876433 3333       679999999997 


Q ss_pred             cEEEEEECCCeEEEEECCc------------------ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          432 QRIMITSEDSKLRILDGVD------------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       432 ~~l~~~s~dg~I~iwd~~~------------------~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ..+++|+.+|.|.+.++..                  ....+.++.....|++++++-||.+|++|+.||.|+|||+.+.
T Consensus       230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence            8999999999999987432                  1223344333459999999999999999999999999999887


Q ss_pred             CcCC
Q 006424          494 CFPS  497 (645)
Q Consensus       494 ~~~~  497 (645)
                      +...
T Consensus       310 Q~iR  313 (476)
T KOG0646|consen  310 QCIR  313 (476)
T ss_pred             HHHH
Confidence            6433

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=2.7e-20  Score=171.70  Aligned_cols=264  Identities=17%  Similarity=0.126  Sum_probs=175.2

Q ss_pred             EEEEEeCCCcEEEEeCCCCc-------------EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE
Q 006424          342 YFISGSIDGKVRIWGVCEKR-------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV  408 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~~~~~-------------~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~  408 (645)
                      .|++|+....|.-+++.-..             ...+..|.+.+++++.  ++.++++|+.|-+|++||++.........
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence            36677777777777654221             2335678899999997  48999999999999999998766433222


Q ss_pred             eeccccccCCCCeEEEEEcCCC-CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEE
Q 006424          409 DFHDRKKTSGNKITGIQFSRDE-SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV  487 (645)
Q Consensus       409 ~~~~~~~~~~~~i~~i~~s~~g-~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~i  487 (645)
                             .|.+.|+++.|.+.- ...|++|+.||.|.+|+.......-....|.+.|+.++.+|.+++-++.+.|+.++.
T Consensus        81 -------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~  153 (362)
T KOG0294|consen   81 -------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRT  153 (362)
T ss_pred             -------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeee
Confidence                   235899999999873 138999999999999998865444444457888999999999999999999999999


Q ss_pred             EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCC--ccccCcccc
Q 006424          488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSE--RFSLGSWFS  565 (645)
Q Consensus       488 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~fs  565 (645)
                      ||+-.+............           ..+.|+|.|.+.+....+.+    -+|.... ...+....  -...+.-|-
T Consensus       154 WNLV~Gr~a~v~~L~~~a-----------t~v~w~~~Gd~F~v~~~~~i----~i~q~d~-A~v~~~i~~~~r~l~~~~l  217 (362)
T KOG0294|consen  154 WNLVRGRVAFVLNLKNKA-----------TLVSWSPQGDHFVVSGRNKI----DIYQLDN-ASVFREIENPKRILCATFL  217 (362)
T ss_pred             ehhhcCccceeeccCCcc-----------eeeEEcCCCCEEEEEeccEE----EEEeccc-HhHhhhhhccccceeeeec
Confidence            999888533322222221           23667777775554444322    1222211 11111111  113333344


Q ss_pred             CCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCcc-CCCCcceEEEEecCCCeEeEEEecCc
Q 006424          566 NDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRA-ISATWGLVIVTAGCDGMIKTFHNYGL  641 (645)
Q Consensus       566 ~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~ivt~s~Dg~Iriw~~~g~  641 (645)
                      ..+ .++++.. ++.|..||.....         +......|....-... +..+++.+|+|+|.||.|+||++...
T Consensus       218 ~~~-~L~vG~d-~~~i~~~D~ds~~---------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  218 DGS-ELLVGGD-NEWISLKDTDSDT---------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             CCc-eEEEecC-CceEEEeccCCCc---------cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            444 4444444 7899999988761         1223334444333333 33557899999999999999998765

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=4.4e-20  Score=185.06  Aligned_cols=249  Identities=18%  Similarity=0.282  Sum_probs=181.9

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      ...|.+.|..+.|-|....|++++.|.++++||++.....                                        
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~----------------------------------------  135 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV----------------------------------------  135 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceee----------------------------------------
Confidence            4579999999999996669999999999999999874321                                        


Q ss_pred             cCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeE--------------------EEEe--------c
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC--------------------LNVF--------D  325 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~--------------------~~~~--------~  325 (645)
                         -...+.||.+.|.+++|.+.+  .+++|+.||.|.|||++....                    ....        .
T Consensus       136 ---G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  136 ---GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             ---cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence               123477999999999999875  899999999999999864320                    0000        1


Q ss_pred             CCC----cEEEEEEeeCCCCEEEEEeC-CCcEEEEeCCCCcEEE---------eecc---CCCeEEEEEccCCCEEEEEe
Q 006424          326 HHN----YVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVVD---------WADV---RDVISAICYIPDGKGFIVGS  388 (645)
Q Consensus       326 ~~~----~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~~~~~---------~~~~---~~~v~~l~~sp~g~~l~~g~  388 (645)
                      +..    .|+.+.|-  |+..||+++. |+.|+|||++......         +..+   ...+.++.....|.++++.+
T Consensus       213 ~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC  290 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC  290 (720)
T ss_pred             ccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence            222    34455554  8889999988 9999999998754322         1222   33577888888899999999


Q ss_pred             cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeE-eecCCCCCeEEE
Q 006424          389 ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSA  467 (645)
Q Consensus       389 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~i~~v  467 (645)
                      .|+.|++|++.......... +.+..  ....-..-..+|++ .++++|+.|...++|.+..+.... ....|...|+++
T Consensus       291 tD~sIy~ynm~s~s~sP~~~-~sg~~--~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V  366 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISPVAE-FSGKL--NSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTV  366 (720)
T ss_pred             cCCcEEEEeccccCcCchhh-ccCcc--cceeeeeeecCCCC-ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEE
Confidence            99999999998765533211 11110  01122234578887 899999999999999987543322 223488899999


Q ss_pred             EEecCC-CEEEEEeCCccEEEEeCCCC
Q 006424          468 SFTTTG-KHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       468 ~~sp~~-~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +|.|.. .-++|+++|.+++||++.++
T Consensus       367 ~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  367 RWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eeccccCCCceeeccCcceEEEeccCc
Confidence            998743 45777799999999999765

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.85  E-value=8.8e-20  Score=176.27  Aligned_cols=207  Identities=18%  Similarity=0.276  Sum_probs=171.6

Q ss_pred             CceeeccCccCeEEEEEcCC---CeEEEEeCCCcEEEEecCCCeE----EEEe-cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          279 PLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQC----LNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~---~~l~s~s~dg~I~iwd~~~~~~----~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                      ......-|.+.|++++|+|.   ..+++|+.-|+|-+||+.+.+.    +..+ .|..+|.++.|+|.+...+++.|.||
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            34556678999999999985   3788999999999999953221    2333 58899999999998889999999999


Q ss_pred             cEEEEeCCCCcEEE---eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424          351 KVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  427 (645)
Q Consensus       351 ~i~vwd~~~~~~~~---~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s  427 (645)
                      +|++-|+++.....   .......+.++.|+.+...++.+..=|...+||++........+.++.      ..|++++++
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~------kKI~sv~~N  331 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK------KKITSVALN  331 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh------cccceeecC
Confidence            99999998865433   333456788899999888888898888999999998887666555554      589999999


Q ss_pred             CCCCcEEEEEECCCeEEEEECCccee----eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          428 RDESQRIMITSEDSKLRILDGVDVIH----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       428 ~~g~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      |..+.++++++.|++.+|||+++...    .+....|...|.++.|||.+..|+|.+.|..|+|||..
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            99889999999999999999884322    35556799999999999999889999999999999984

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=6e-20  Score=170.33  Aligned_cols=292  Identities=18%  Similarity=0.273  Sum_probs=210.7

Q ss_pred             ccccccccCcEEEEEECC-----CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424          193 SQEIQAHKGCIWTLKFSP-----DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  267 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fsp-----dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (645)
                      .+....|..+|..++|++     +...+|++|.+ .+.+|.......                                 
T Consensus        31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~---------------------------------   76 (385)
T KOG1034|consen   31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGG---------------------------------   76 (385)
T ss_pred             eehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccc---------------------------------
Confidence            344568999999999985     23467777665 588888764210                                 


Q ss_pred             cCCCceeccCCCceeec--cCccCeEEEEEcC---C-C-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCC
Q 006424          268 IPDEVFQIEESPLQELH--GHKGDVLDLAWSN---S-N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPID  339 (645)
Q Consensus       268 ~~~~~~~~~~~~~~~l~--~h~~~V~~l~~s~---~-~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~  339 (645)
                               ...++.+.  .|......++|+-   + + +++.|+.-|.|+|.|+.++++...+ +|...|+.+.++|..
T Consensus        77 ---------ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~  147 (385)
T KOG1034|consen   77 ---------IRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR  147 (385)
T ss_pred             ---------eeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC
Confidence                     01122221  3677788888873   2 3 8999999999999999999998877 599999999999988


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcEEE----eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee---------
Q 006424          340 DNYFISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE---------  406 (645)
Q Consensus       340 ~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~---------  406 (645)
                      .++++++|.|..|++|++++..++.    ..+|.+.|.++.|+++|.++++++.|.++++|++...+....         
T Consensus       148 ~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~  227 (385)
T KOG1034|consen  148 PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSP  227 (385)
T ss_pred             CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence            8999999999999999999999887    457899999999999999999999999999999984332111         


Q ss_pred             ----------EEeecc--ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc----------------eeeEeec
Q 006424          407 ----------KVDFHD--RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV----------------IHKFKGL  458 (645)
Q Consensus       407 ----------~~~~~~--~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~----------------~~~~~~~  458 (645)
                                ...+..  ....|...|-|+.|--   .++++-+-++.|..|...+.                ...+...
T Consensus       228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~  304 (385)
T KOG1034|consen  228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP  304 (385)
T ss_pred             CCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC
Confidence                      011111  2233556666777764   48899899999999975211                1112221


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCc
Q 006424          459 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL  536 (645)
Q Consensus       459 ~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~  536 (645)
                      ...-.-...+|+|-++.||.|...|.|++||++....+...      ...+--....+...+|+.|+..|...++++.
T Consensus       305 ~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t------tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~  376 (385)
T KOG1034|consen  305 MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT------TLTHSKSGSTVRQTSFSRDGSILVLVCDDGT  376 (385)
T ss_pred             ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc------eEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence            11222334566778999999999999999999987543211      1111112345778899999999998888754

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=6.4e-21  Score=193.53  Aligned_cols=235  Identities=17%  Similarity=0.259  Sum_probs=186.4

Q ss_pred             eccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424          283 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  360 (645)
Q Consensus       283 l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~  360 (645)
                      +..|...|.++..-..+ .+++|+.|..+-+|.+.....+..+ .|..+|.++.|++ ...+|+.|+.+|+|++||+...
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhh
Confidence            44588888888874444 7889999999999999877777664 6999999999999 8999999999999999999987


Q ss_pred             cEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424          361 RVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  439 (645)
Q Consensus       361 ~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~  439 (645)
                      +.+ .+.+|...+.++.|+|-+.+++.|+.|+.+.+||.+...+...   +.    .|...+.++.|+|+| .+++.++.
T Consensus       103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~---~~----s~~~vv~~l~lsP~G-r~v~~g~e  174 (825)
T KOG0267|consen  103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT---YK----SHTRVVDVLRLSPDG-RWVASGGE  174 (825)
T ss_pred             hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee---ec----CCcceeEEEeecCCC-ceeeccCC
Confidence            755 4789999999999999999999999999999999996555322   11    245778999999998 89999999


Q ss_pred             CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEE
Q 006424          440 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV  519 (645)
Q Consensus       440 dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v  519 (645)
                      |..++|||+......-....|.+.+..+.|+|..-++++||.|+++++||+++-+........          -..+.+.
T Consensus       175 d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~----------~~~v~~~  244 (825)
T KOG0267|consen  175 DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE----------TDGVRSL  244 (825)
T ss_pred             cceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc----------cCCceee
Confidence            999999998644333333348899999999999999999999999999999865432222111          1234567


Q ss_pred             ecCCCCccccccCCCCc
Q 006424          520 QWPGIGTEQKSLCSSSL  536 (645)
Q Consensus       520 ~~s~~~~~l~~~~~~~~  536 (645)
                      +|+|++..+.+.....+
T Consensus       245 ~fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  245 AFNPDGKIVLSGEQISL  261 (825)
T ss_pred             eecCCceeeecCchhhh
Confidence            77777776665444433

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.4e-18  Score=159.93  Aligned_cols=257  Identities=18%  Similarity=0.250  Sum_probs=185.2

Q ss_pred             ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe----EEEEe-cCCCcEEEEEEee-CCCCEEEEEeCCCcEEEEe
Q 006424          284 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVF-DHHNYVTCVQFNP-IDDNYFISGSIDGKVRIWG  356 (645)
Q Consensus       284 ~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~----~~~~~-~~~~~v~~l~~~p-~~~~~l~s~s~dg~i~vwd  356 (645)
                      .+|.+-|.++.|...| ++++|+.|++|+|||.+...    +.... .|.+.|..+.|.+ .-|+.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            3789999999999887 89999999999999975432    33333 3899999999954 4578999999999999997


Q ss_pred             CCC----------CcEEEeeccCCCeEEEEEcc--CCCEEEEEecCCeEEEEEecCCceeeeEEee-------ccccccC
Q 006424          357 VCE----------KRVVDWADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDF-------HDRKKTS  417 (645)
Q Consensus       357 ~~~----------~~~~~~~~~~~~v~~l~~sp--~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~  417 (645)
                      -..          .+...+...+..|+.++|.|  -|-.+|+++.||.++||+.....- .....+       ......+
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccchhhhhhhhccCCcccc
Confidence            521          12334667788999999999  467899999999999998754321 111111       1122234


Q ss_pred             CCCeEEEEEcCC--CCcEEEEEECC-----CeEEEEECCc----ceeeEeecCCCCCeEEEEEecCC----CEEEEEeCC
Q 006424          418 GNKITGIQFSRD--ESQRIMITSED-----SKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTG----KHIISIGDD  482 (645)
Q Consensus       418 ~~~i~~i~~s~~--g~~~l~~~s~d-----g~I~iwd~~~----~~~~~~~~~~~~~i~~v~~sp~~----~~l~t~s~d  482 (645)
                      ..+..|+.|+|.  ...+|++|+.+     +.++||...+    ....-....+..+|+.++|.|+-    ..||+++.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence            567889999975  23577887776     5889997543    23333345689999999999963    579999999


Q ss_pred             ccEEEEeCCCCCcCC---------CcccCCcceeeeee-cCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424          483 CRVYVWNYDELCFPS---------SKQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  545 (645)
Q Consensus       483 g~I~iwd~~~~~~~~---------~~~~~~~~~~~~~~-~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~  545 (645)
                      | |+||.+.......         ....-.+..+..+. |++.+..+.|+-.|..|.+.++|+.   ++.|..
T Consensus       249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~---VRLWka  317 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC---VRLWKA  317 (361)
T ss_pred             c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce---eeehhh
Confidence            9 9999998533111         11111222222233 7789999999999999999988855   556665

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.83  E-value=3e-19  Score=162.79  Aligned_cols=297  Identities=14%  Similarity=0.167  Sum_probs=211.2

Q ss_pred             cccccceecccccccccccchhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhccc
Q 006424           75 NRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRN  154 (645)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (645)
                      .--.+|.++..|...++...+-+.|.-+..|||.++-+|...++++++..-+.     ..+                   
T Consensus        35 slK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s-----~s~-------------------   90 (370)
T KOG1007|consen   35 SLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTS-----DSG-------------------   90 (370)
T ss_pred             ccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccC-----CCc-------------------
Confidence            33455888999988888889999999999999999999998887777655000     000                   


Q ss_pred             chhhccccCCCCCCCCccchhHhhhcccccccccccccccccc-cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 006424          155 VETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA  233 (645)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~  233 (645)
                                    .-....++..++.........+..+..|. .|-+.|.|+.|.|++..||+-. |..|.+|++....
T Consensus        91 --------------vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess  155 (370)
T KOG1007|consen   91 --------------VLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESS  155 (370)
T ss_pred             --------------ceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCc
Confidence                          00001111111111122333344445554 5777999999999999998876 7789999998743


Q ss_pred             eeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcC--CCeEEEEeCCCcEE
Q 006424          234 ASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVR  311 (645)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~~~l~s~s~dg~I~  311 (645)
                      ......                                       +...-.+|....++-+|+|  ++.-+....|+++.
T Consensus       156 ~~vaev---------------------------------------~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~  196 (370)
T KOG1007|consen  156 KIVAEV---------------------------------------LSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQ  196 (370)
T ss_pred             chheee---------------------------------------cccccccccceecccccCCCCccceEEEeCCCcEE
Confidence            311000                                       0011112566778889997  45556666789999


Q ss_pred             EEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc--EEEeeccCCCeEEEEEccC-CCEEEE
Q 006424          312 MWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPD-GKGFIV  386 (645)
Q Consensus       312 iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~v~~l~~sp~-g~~l~~  386 (645)
                      .||+++..+...+.  |...|..+.|+|+...+|++|+.||.|++||.+..+  +..+.+|...|.++.|+|. .+++++
T Consensus       197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs  276 (370)
T KOG1007|consen  197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS  276 (370)
T ss_pred             EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence            99999988887775  888999999999667789999999999999998744  5568899999999999995 568889


Q ss_pred             EecCCeEEEEEecCCceeee-----------------E-Eeec----cccccCCCCeEEEEEcCCCCcEEEEEECCCeEE
Q 006424          387 GSITGTCHFYKASGNDLKLE-----------------K-VDFH----DRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  444 (645)
Q Consensus       387 g~~dg~i~iwd~~~~~~~~~-----------------~-~~~~----~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~  444 (645)
                      |+.|..|.+|....-.....                 + -.+.    .....|...|.+++|+.-.+..+++-+.||++.
T Consensus       277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence            99999999997643221100                 0 0011    123446789999999988788999999999998


Q ss_pred             EEECC
Q 006424          445 ILDGV  449 (645)
Q Consensus       445 iwd~~  449 (645)
                      |=.+.
T Consensus       357 Is~V~  361 (370)
T KOG1007|consen  357 ISSVP  361 (370)
T ss_pred             eecCC
Confidence            87654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=2.2e-19  Score=173.05  Aligned_cols=205  Identities=21%  Similarity=0.280  Sum_probs=168.5

Q ss_pred             cccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          196 IQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       196 l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      -.+|++.|.++.|+.. .+.|||||.|.+|++||+.+                                           
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~-------------------------------------------  275 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT-------------------------------------------  275 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCC-------------------------------------------
Confidence            4579999999999986 45999999999999999998                                           


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                        +++..++..|.+.|.++.|+|..  .|++|++|++|.+.|.+.. ..-......+.|..++|.|...+.++++..||+
T Consensus       276 --g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~  353 (463)
T KOG0270|consen  276 --GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT  353 (463)
T ss_pred             --CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce
Confidence              56677888899999999999874  8999999999999999842 233345677889999999988889999999999


Q ss_pred             EEEEeCCCC-c-EEEeeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          352 VRIWGVCEK-R-VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       352 i~vwd~~~~-~-~~~~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      |+-+|+|.. + +.....|.+.|.++++++.- .++++++.|+.+++|++.............     .-+...|.++.|
T Consensus       354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~-----~~~rl~c~~~~~  428 (463)
T KOG0270|consen  354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF-----KLGRLHCFALDP  428 (463)
T ss_pred             EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc-----cccceeecccCC
Confidence            999999974 3 45578899999999999854 478889999999999998665433211111     114467888888


Q ss_pred             CCCcEEEEEECCCeEEEEECCc
Q 006424          429 DESQRIMITSEDSKLRILDGVD  450 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~~  450 (645)
                      +-..+++.|+..+.++|||+..
T Consensus       429 ~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  429 DVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             CcceEEEecCccceEEEeeccc
Confidence            8767899999999999999764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.82  E-value=1e-18  Score=159.76  Aligned_cols=245  Identities=16%  Similarity=0.259  Sum_probs=181.6

Q ss_pred             ccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          197 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       197 ~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      .+|+-.|.++.|-| |.-.+.+++-|.++++||..+.+                                          
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ------------------------------------------  135 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ------------------------------------------  135 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccce------------------------------------------
Confidence            47999999999999 55688999999999999998732                                          


Q ss_pred             cCCCceeeccCccCeEEEEEcCC---C-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          276 EESPLQELHGHKGDVLDLAWSNS---N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~---~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                         ....|. .++.|+.-+++|-   . ++++|..|-.|++.|+.+|.+.+.+. |.+.|.++.|+|..+-.|++|+.||
T Consensus       136 ---~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg  211 (397)
T KOG4283|consen  136 ---EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG  211 (397)
T ss_pred             ---eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCc
Confidence               122222 4566777777762   3 67888889999999999999999884 9999999999996677799999999


Q ss_pred             cEEEEeCCCC--cEEE--------------eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccc
Q 006424          351 KVRIWGVCEK--RVVD--------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  414 (645)
Q Consensus       351 ~i~vwd~~~~--~~~~--------------~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  414 (645)
                      .|++||++..  ....              -..|.+.++.++|+.+|.++++.+.|..+++|+...+...........+.
T Consensus       212 ~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n  291 (397)
T KOG4283|consen  212 AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHN  291 (397)
T ss_pred             eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccc
Confidence            9999999753  2211              24566789999999999999999999999999998776544322211111


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      ....-.+. +. +-+. ..++.--.++.+.++++.+....-....|...+.+..+-|+-+...+|..|+.|+.|-.
T Consensus       292 ~~~~~~~~-~~-~~~s-~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  292 QTTSFAVH-IQ-SMDS-DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ccccceEE-Ee-eccc-ceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            11111222 22 2221 23444445578888886644433333346778999999999999999999999999986

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=6.1e-19  Score=170.63  Aligned_cols=251  Identities=16%  Similarity=0.273  Sum_probs=191.5

Q ss_pred             ccccccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          195 EIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      .+.--..+|.+++|.|+|. .+++++....+..||+.+.+.                                       
T Consensus       252 S~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~---------------------------------------  292 (514)
T KOG2055|consen  252 SIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV---------------------------------------  292 (514)
T ss_pred             eeeeccCccceeeecCCCceEEEecccceEEEEeecccccc---------------------------------------
Confidence            3434467899999999999 999999999999999987432                                       


Q ss_pred             eccCCCceeeccCc-cCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          274 QIEESPLQELHGHK-GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       274 ~~~~~~~~~l~~h~-~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                          ..+..+.|+. ..+.....++++ +|+..+..|.|.+....+++.+..+...+.|..++|+. +++.|++++.+|.
T Consensus       293 ----~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS-dsk~l~~~~~~Ge  367 (514)
T KOG2055|consen  293 ----TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS-DSKELLASGGTGE  367 (514)
T ss_pred             ----ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-CCcEEEEEcCCce
Confidence                1223333443 345566677876 89999999999999999999999999999999999998 8899999889999


Q ss_pred             EEEEeCCCCcEEEeeccCCCe--EEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          352 VRIWGVCEKRVVDWADVRDVI--SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       352 i~vwd~~~~~~~~~~~~~~~v--~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      |.+||++...++......+.|  +++|.+++|.+||+|+..|.|.|||..+.......-... ....-...|++++|+++
T Consensus       368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik-~~dNLtt~Itsl~Fn~d  446 (514)
T KOG2055|consen  368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK-TVDNLTTAITSLQFNHD  446 (514)
T ss_pred             EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh-hhhhhheeeeeeeeCcc
Confidence            999999999888765555554  467778999999999999999999965432211100000 01112367999999999


Q ss_pred             CCcEEEEEEC--CCeEEEEECCccee--eEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          430 ESQRIMITSE--DSKLRILDGVDVIH--KFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       430 g~~~l~~~s~--dg~I~iwd~~~~~~--~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      . ++|+.+|.  +..+++-.+..+..  -+. ....-+.|+|++|||.+.++|.|..+|++.+|.+.
T Consensus       447 ~-qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  447 A-QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             h-hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            7 88888775  57788887653221  111 12244679999999999999999999999999874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=2.9e-19  Score=168.66  Aligned_cols=208  Identities=20%  Similarity=0.375  Sum_probs=162.6

Q ss_pred             cccccccccccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424          188 TALYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  266 (645)
Q Consensus       188 ~~~~~~~~l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (645)
                      .....+.++.+|.+.=+.++|||- ...|+||.--+.|++|...++.                                 
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~---------------------------------  245 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS---------------------------------  245 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc---------------------------------
Confidence            445567788999999999999993 2368888888889999987732                                 


Q ss_pred             ecCCCceeccCCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCC---eEEEEecCCCcEEEEEEeeCCCC
Q 006424          267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDN  341 (645)
Q Consensus       267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~---~~~~~~~~~~~v~~l~~~p~~~~  341 (645)
                            |.++.   ..+.+|+..|-.|+|||.  +.|+|||.||+|+|||++.+   .++..-.|.+.|+.+.|+. ...
T Consensus       246 ------W~vd~---~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~  315 (440)
T KOG0302|consen  246 ------WKVDQ---RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REP  315 (440)
T ss_pred             ------eeecC---ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-Ccc
Confidence                  22222   345679999999999985  59999999999999999988   4555556999999999998 666


Q ss_pred             EEEEEeCCCcEEEEeCCCCc----EEEeeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCce-------------
Q 006424          342 YFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDL-------------  403 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~-------------  403 (645)
                      +|++|+.||+++|||++.-+    +..+..|..+|+++.|+|. ...|++++.|..|.+||+....-             
T Consensus       316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~  395 (440)
T KOG0302|consen  316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQ  395 (440)
T ss_pred             eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchh
Confidence            99999999999999998744    3368889999999999994 55888899999999999963321             


Q ss_pred             --eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCe
Q 006424          404 --KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK  442 (645)
Q Consensus       404 --~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~  442 (645)
                        +...+-.|..    ...+..+.|++.-+-++++.+.||-
T Consensus       396 dlPpQLLFVHqG----Qke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  396 DLPPQLLFVHQG----QKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             cCCceeEEEecc----hhHhhhheeccCCCCeEEEecccce
Confidence              1111111211    2567788999987778888888873

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=5.5e-20  Score=196.63  Aligned_cols=249  Identities=16%  Similarity=0.238  Sum_probs=197.2

Q ss_pred             CcEEEEEECCCCCE----EEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          201 GCIWTLKFSPDGRY----LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       201 ~~V~~l~fspdg~~----L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      ...+.++|.+.|..    ||.|..||.|.+||......                                       ...
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---------------------------------------~~~  105 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---------------------------------------NAS  105 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhcc---------------------------------------Ccc
Confidence            35678999987765    89999999999999875100                                       002


Q ss_pred             CCCceeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          277 ESPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                      ...+..+..|++.|..+.|++. + .|++|+.||.|.|||+..-+.-..+   ...+.|.+++|+....++|++++.+|.
T Consensus       106 ~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~  185 (1049)
T KOG0307|consen  106 EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR  185 (1049)
T ss_pred             hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence            3456677789999999999985 3 8999999999999999875544444   256789999999867788999999999


Q ss_pred             EEEEeCCCCcEE-Eeecc--CCCeEEEEEccCCC-EEEEEecCC---eEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424          352 VRIWGVCEKRVV-DWADV--RDVISAICYIPDGK-GFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       352 i~vwd~~~~~~~-~~~~~--~~~v~~l~~sp~g~-~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                      +.|||++..+.+ .+..+  +..+..+.|+|+.. .+++++.|.   .|.+||++....+......      |...|.++
T Consensus       186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~------H~~Gilsl  259 (1049)
T KOG0307|consen  186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG------HQRGILSL  259 (1049)
T ss_pred             ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc------cccceeee
Confidence            999999987543 34333  34578999999764 666666553   6999999987776554433      34789999


Q ss_pred             EEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-EEEEEeCCccEEEEeCCCCC
Q 006424          425 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       425 ~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s~dg~I~iwd~~~~~  494 (645)
                      .|++.+..++++++.|++|.+|+.++............++..+.|+|... .++.++-||.|-|+.+.+..
T Consensus       260 sWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  260 SWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            99998878999999999999999887555555555778999999999776 78888899999999998765

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=7.9e-19  Score=161.91  Aligned_cols=289  Identities=11%  Similarity=0.131  Sum_probs=195.1

Q ss_pred             eEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec
Q 006424          290 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD  367 (645)
Q Consensus       290 V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  367 (645)
                      ..|+.|++.| +|+.|+.||.|.|||+.+...-+.+. |-.+|++++|++ +|+.|+++|.|..|.+||+..+.+.....
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            7899999988 89999999999999999988777775 999999999999 99999999999999999999999999889


Q ss_pred             cCCCeEEEEEccCCCE-EEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424          368 VRDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  446 (645)
Q Consensus       368 ~~~~v~~l~~sp~g~~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw  446 (645)
                      ...+|....|+|..+. +++.-.+..-.+.++........  . ............+..|.+.| .++++|...|.+.++
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~L--p-~d~d~dln~sas~~~fdr~g-~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVL--P-KDDDGDLNSSASHGVFDRRG-KYIITGTSKGKLLVY  180 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeec--c-CCCccccccccccccccCCC-CEEEEecCcceEEEE
Confidence            9999999999995543 33333344455555554322211  1 11111111223344688887 899999999999999


Q ss_pred             ECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcc-cCCcceeeeeecCCcEEEEecCC
Q 006424          447 DGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSCEHFFSEGVSVAVQWPG  523 (645)
Q Consensus       447 d~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~s~  523 (645)
                      |..+.  ...++.. ....|..+.++..|++|++-+.|..|+.|++..-....... ..........-..-....++|+.
T Consensus       181 ~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~  259 (405)
T KOG1273|consen  181 DAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG  259 (405)
T ss_pred             ecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence            97743  3344432 23678899999999999999999999999987432110000 00000000000111223455566


Q ss_pred             CCccccccCCCCccccCccccccccCC--ccCCCC-ccccCccccCCCCCCcCCCCCCCcCCCCCCcc
Q 006424          524 IGTEQKSLCSSSLRDCSQKWDNLETAP--WIRDSE-RFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI  588 (645)
Q Consensus       524 ~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~~~-~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~  588 (645)
                      +|.++...+  .......+|....+..  .+.+.. .....+.+.|-...++|..  .|.+++|....
T Consensus       260 dgeYv~a~s--~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~--sg~v~iw~~~~  323 (405)
T KOG1273|consen  260 DGEYVCAGS--ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA--SGVVYIWAVVQ  323 (405)
T ss_pred             CccEEEecc--ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc--CCceEEEEeec
Confidence            666655443  3334455666543333  223333 3456677778777787764  57899997543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.82  E-value=6.1e-19  Score=163.68  Aligned_cols=244  Identities=21%  Similarity=0.364  Sum_probs=183.8

Q ss_pred             ccCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          199 HKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       199 H~~~V~~l~fspd----g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      |...-..++|+-|    ..+||.||.-|.|+|.|+.+                                           
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-------------------------------------------  124 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-------------------------------------------  124 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-------------------------------------------
Confidence            5566677777653    34899999999999999987                                           


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeC
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~----~~~~v~~l~~~p~~~~~l~s~s~  348 (645)
                        ++....+.+|...|+.+.++|..  ++++||.|.+|++|++++..++..|+    |.+.|.++.|++ ++.++++++.
T Consensus       125 --~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGm  201 (385)
T KOG1034|consen  125 --GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGM  201 (385)
T ss_pred             --hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCC
Confidence              45567888999999999999986  89999999999999999999999995    999999999999 9999999999


Q ss_pred             CCcEEEEeCCCCcEE-----------------------------EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEec
Q 006424          349 DGKVRIWGVCEKRVV-----------------------------DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  399 (645)
Q Consensus       349 dg~i~vwd~~~~~~~-----------------------------~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~  399 (645)
                      |.++++|++...+..                             ...-|...|-|+.|-  |+++++-+.++.|..|...
T Consensus       202 Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pg  279 (385)
T KOG1034|consen  202 DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPG  279 (385)
T ss_pred             cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecc
Confidence            999999999843311                             112244445555553  5788998899999999873


Q ss_pred             CCceeeeE-------EeeccccccCCCCeEEE--EEcCCCCcEEEEEECCCeEEEEECCcc----eeeEeecCCCCCeEE
Q 006424          400 GNDLKLEK-------VDFHDRKKTSGNKITGI--QFSRDESQRIMITSEDSKLRILDGVDV----IHKFKGLPKSGSQMS  466 (645)
Q Consensus       400 ~~~~~~~~-------~~~~~~~~~~~~~i~~i--~~s~~g~~~l~~~s~dg~I~iwd~~~~----~~~~~~~~~~~~i~~  466 (645)
                      ........       .....+..-....|.-+  +|.|-+ ..|+.|...|.|++||++..    ..++........|..
T Consensus       280 kl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ  358 (385)
T KOG1034|consen  280 KLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQ  358 (385)
T ss_pred             hhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeee
Confidence            11111000       00111111112344444  455665 78999999999999998732    223333445668999


Q ss_pred             EEEecCCCEEEEEeCCccEEEEeCC
Q 006424          467 ASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       467 v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      .+||.|+..|+...+|++|.-||.-
T Consensus       359 ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  359 TSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             eeecccCcEEEEEeCCCcEEEEEee
Confidence            9999999999999999999999864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=1.5e-18  Score=169.01  Aligned_cols=191  Identities=19%  Similarity=0.277  Sum_probs=155.6

Q ss_pred             CeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeecc--CCCeEEE
Q 006424          299 NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV--RDVISAI  375 (645)
Q Consensus       299 ~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~v~~l  375 (645)
                      -++++|+..+.|+|||++...+.+.+ +|.+.|+++.++- ...+||+++..|.|.+..+.++.......+  ...|.-+
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll  170 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL  170 (673)
T ss_pred             eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEe
Confidence            48999999999999999966666666 4999999999998 788999999999999999998876654444  3456789


Q ss_pred             EEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceee
Q 006424          376 CYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK  454 (645)
Q Consensus       376 ~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~  454 (645)
                      .|+|..+ +|.+++.+|.|.+||+.+......      -...|..+...|+|+|.+..+|++.+.|..|.+||.+.... 
T Consensus       171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~------~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-  243 (673)
T KOG4378|consen  171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH------ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-  243 (673)
T ss_pred             ecccccceeeEeeccCCeEEEEeccCCCcccc------hhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-
Confidence            9999777 456688999999999987765322      23345688999999999888999999999999999873222 


Q ss_pred             EeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424          455 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  497 (645)
Q Consensus       455 ~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~  497 (645)
                      ........+...++|+++|.+|+.|+..|.|+.||++..+.+.
T Consensus       244 ~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv  286 (673)
T KOG4378|consen  244 TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV  286 (673)
T ss_pred             cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence            1122246688999999999999999999999999999875443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=4.5e-18  Score=171.01  Aligned_cols=233  Identities=19%  Similarity=0.319  Sum_probs=180.8

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      .|..++|-|||..|+.+..| .+.+||...                                             +..++
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~nd---------------------------------------------G~llq   47 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSD---------------------------------------------GTLLQ   47 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCC---------------------------------------------ccccc
Confidence            79999999999987776655 599999986                                             66789


Q ss_pred             eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCc-------------------------------
Q 006424          282 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-------------------------------  329 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~-------------------------------  329 (645)
                      ++++|.+.|+|++|+.+| .++||+.|+.|.+|+-.-. -+..+.|++.                               
T Consensus        48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V  126 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV  126 (1081)
T ss_pred             ccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhH
Confidence            999999999999999998 8999999999999985421 1222334444                               


Q ss_pred             --------EEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe---eccCCCeEEEEEccCC-----CEEEEEecCCeE
Q 006424          330 --------VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW---ADVRDVISAICYIPDG-----KGFIVGSITGTC  393 (645)
Q Consensus       330 --------v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~v~~l~~sp~g-----~~l~~g~~dg~i  393 (645)
                              +.+++|.. ||.+++.|-.||+|.+-+-...+...+   -+..++|.+++|+|..     ..+++..-..++
T Consensus       127 ~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL  205 (1081)
T KOG1538|consen  127 SKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL  205 (1081)
T ss_pred             HhhhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence                    44555555 899999999999999987665554443   3467899999999953     478888888889


Q ss_pred             EEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC
Q 006424          394 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG  473 (645)
Q Consensus       394 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~  473 (645)
                      .+|.+.+.....        .+.-+....|+++.++| .+++.|+.|+.+.+|... .+..-........|..++..|++
T Consensus       206 SFy~LsG~~Igk--------~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNs  275 (1081)
T KOG1538|consen  206 SFYQLSGKQIGK--------DRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNS  275 (1081)
T ss_pred             EEEEecceeecc--------cccCCCCchhheeccCC-cEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCC
Confidence            999887654321        11122456789999998 899999999999999743 33333333367799999999999


Q ss_pred             CEEEEEeCCccEEEEeCCC
Q 006424          474 KHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       474 ~~l~t~s~dg~I~iwd~~~  492 (645)
                      ++++.|+.||+|-.|++..
T Consensus       276 Q~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  276 QYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             ceEEEEEccCeeehhhhHH
Confidence            9999999999999999743

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=1.7e-18  Score=164.44  Aligned_cols=234  Identities=22%  Similarity=0.354  Sum_probs=182.7

Q ss_pred             cccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          196 IQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       196 l~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      +.||+++|..++|+| +...+||||.|.+|.||.+.......                                      
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~--------------------------------------  118 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR--------------------------------------  118 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc--------------------------------------
Confidence            679999999999999 56799999999999999987532110                                      


Q ss_pred             ccCCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  352 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i  352 (645)
                      .-..++..+.||...|.-++|+|.  +.|+|++.|.+|.+||+.+|+.+-.+.|.+.|+++.|+. +|.+|++++.|..|
T Consensus       119 ~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkv  197 (472)
T KOG0303|consen  119 DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKV  197 (472)
T ss_pred             CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeeccccee
Confidence            013678899999999999999986  589999999999999999999999999999999999999 99999999999999


Q ss_pred             EEEeCCCCcEEEee-ccCC-CeEEEEEccCCCEEEEEe---cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424          353 RIWGVCEKRVVDWA-DVRD-VISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  427 (645)
Q Consensus       353 ~vwd~~~~~~~~~~-~~~~-~v~~l~~sp~g~~l~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s  427 (645)
                      +|||.++++++... .|.+ .-..+.|-.+|..+.+|.   .+..+-+||..+...+.....+..     .+.|.---|.
T Consensus       198 Rv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-----SnGvl~PFyD  272 (472)
T KOG0303|consen  198 RVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-----SNGVLLPFYD  272 (472)
T ss_pred             EEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-----CCceEEeeec
Confidence            99999999988743 4433 345566778888665553   467899999887776654444443     2556666678


Q ss_pred             CCCCcEEEEEECCCeEEEEECCcc---eeeEeecCCCCCeEEEEEecCC
Q 006424          428 RDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTG  473 (645)
Q Consensus       428 ~~g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp~~  473 (645)
                      ++.+-..++|-.|+.|+.|.+...   .+-+.......+-.++.|-|..
T Consensus       273 ~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  273 PDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR  321 (472)
T ss_pred             CCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence            886555667778999999997632   3333333345566677776654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1.4e-19  Score=179.43  Aligned_cols=258  Identities=19%  Similarity=0.305  Sum_probs=187.7

Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      ++..|.+.|+.++|+|....|++|+.||++++|+++.....                                     -.
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-------------------------------------~~  331 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-------------------------------------AE  331 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-------------------------------------cc
Confidence            78889999999999999999999999999999999541100                                     00


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC------e---EE--EEecCCCcEEEEEEeeCCCCE
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN------Q---CL--NVFDHHNYVTCVQFNPIDDNY  342 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~------~---~~--~~~~~~~~v~~l~~~p~~~~~  342 (645)
                      ..-.++.+|.+|.++|.|+++.+++ .+++|+.||+|+.|++...      .   .+  ...+|.+.|+.+++++ ..+.
T Consensus       332 ~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~  410 (577)
T KOG0642|consen  332 KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDR  410 (577)
T ss_pred             cceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccc
Confidence            1246788999999999999999887 8999999999999965321      1   11  1236999999999999 7888


Q ss_pred             EEEEeCCCcEEEEeCCCCcEEEeec--cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc---cccC
Q 006424          343 FISGSIDGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---KKTS  417 (645)
Q Consensus       343 l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~  417 (645)
                      |++++.||++++|+........+..  ..+...++.+....  .+....+.....+++...........+...   ....
T Consensus       411 Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~  488 (577)
T KOG0642|consen  411 LLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRR  488 (577)
T ss_pred             eeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch--hHhhhhhcccccccchhhhhhhheeeccccCCCcccc
Confidence            9999999999999987766633322  23344555554322  222222333333333332221111111111   0111


Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ...+..+.++|.+ .+.+++..|+.|+++|............|...++++++.|+|.+|++++.||.+++|.++..
T Consensus       489 ~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  489 YPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             cCccceEEecCCC-CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence            2457788899987 79999999999999998766666666668899999999999999999999999999998765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=4.9e-18  Score=177.46  Aligned_cols=276  Identities=14%  Similarity=0.149  Sum_probs=207.9

Q ss_pred             ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC-eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424          284 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  360 (645)
Q Consensus       284 ~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~-~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~  360 (645)
                      .+|...-+.++|.|+| .|++|+.||.|++|+.... +.-..+. +...|.+++.   ..++|++|+.+++|.+|.+..+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee---cccceEEeeccceEEEeeCCCC
Confidence            3688889999999998 8999999999999988655 4344444 7788888887   5669999999999999999887


Q ss_pred             cEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424          361 RVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  439 (645)
Q Consensus       361 ~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~  439 (645)
                      .... +....-++++++|+.+|+++|.|+.|-.|++.++.+......       ...|..+|.++.|+|.+ .+||+.+-
T Consensus        87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~-------lrgh~apVl~l~~~p~~-~fLAvss~  158 (933)
T KOG1274|consen   87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV-------LRGHDAPVLQLSYDPKG-NFLAVSSC  158 (933)
T ss_pred             CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee-------ecccCCceeeeeEcCCC-CEEEEEec
Confidence            6553 445567899999999999999999999999999987765432       22346899999999998 89999999


Q ss_pred             CCeEEEEECCccee--eEee------cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee
Q 006424          440 DSKLRILDGVDVIH--KFKG------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF  511 (645)
Q Consensus       440 dg~I~iwd~~~~~~--~~~~------~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  511 (645)
                      ||.|++||+.+...  .+.+      ......+..++|+|+|..++..+.|+.|++|+..+.........+.       +
T Consensus       159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~-------~  231 (933)
T KOG1274|consen  159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL-------S  231 (933)
T ss_pred             CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc-------c
Confidence            99999999874322  2221      1124456789999998888888999999999998875443332221       1


Q ss_pred             cCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCC
Q 006424          512 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLW  584 (645)
Q Consensus       512 ~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iW  584 (645)
                       ...+..+.|+|.|.+||+..-+   ..+.+|+...  ........-+.+.+|-|+...+-..++ .|...+|
T Consensus       232 -ss~~~~~~wsPnG~YiAAs~~~---g~I~vWnv~t--~~~~~~~~~Vc~~aw~p~~n~it~~~~-~g~~~~~  297 (933)
T KOG1274|consen  232 -SSKFSDLQWSPNGKYIAASTLD---GQILVWNVDT--HERHEFKRAVCCEAWKPNANAITLITA-LGTLGVS  297 (933)
T ss_pred             -ccceEEEEEcCCCcEEeeeccC---CcEEEEeccc--chhccccceeEEEecCCCCCeeEEEee-ccccccC
Confidence             1226788999999999976655   4466787754  112344567888999999886544333 3444444

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=3.7e-18  Score=170.00  Aligned_cols=291  Identities=18%  Similarity=0.167  Sum_probs=200.1

Q ss_pred             CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCC-EEEEEeCCCcEEE
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN-YFISGSIDGKVRI  354 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~-~l~s~s~dg~i~v  354 (645)
                      ......+.||++.|.+++..|.| .|++|+.||+|+||.+.+|.|+.++...+.|.|++|+| .++ -++.+..+..+.+
T Consensus       390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P-~~~~~vLAvA~~~~~~i  468 (733)
T KOG0650|consen  390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNP-LSDLCVLAVAVGECVLI  468 (733)
T ss_pred             ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecC-CCCceeEEEEecCceEE
Confidence            34456788999999999999988 99999999999999999999999999999999999999 443 3333333333444


Q ss_pred             EeCCCC--------------------------------------cEEEeeccCCCeEEEEEccCCCEEEEEecC---CeE
Q 006424          355 WGVCEK--------------------------------------RVVDWADVRDVISAICYIPDGKGFIVGSIT---GTC  393 (645)
Q Consensus       355 wd~~~~--------------------------------------~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d---g~i  393 (645)
                      .+..-|                                      -+.....|...|..+.|+..|.||++...+   ..|
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence            432111                                      012345677889999999999999997664   468


Q ss_pred             EEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC
Q 006424          394 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG  473 (645)
Q Consensus       394 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~  473 (645)
                      .|+++.......   .+.    ...+.+.++.|+|.. .+|++++. ..|+|||+......-+.......|..++.+|.|
T Consensus       549 liHQLSK~~sQ~---PF~----kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  549 LIHQLSKRKSQS---PFR----KSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG  619 (733)
T ss_pred             EEEecccccccC---chh----hcCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence            888887554321   121    123779999999996 45555553 579999987544333444467789999999999


Q ss_pred             CEEEEEeCCccEEEEeCCCCCcCCCc--ccCCcceeeeeecCCcEEEEecCCCCccccc---cCCCCccccCcccccccc
Q 006424          474 KHIISIGDDCRVYVWNYDELCFPSSK--QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS---LCSSSLRDCSQKWDNLET  548 (645)
Q Consensus       474 ~~l~t~s~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~---~~~~~~~~~~~~w~~~~~  548 (645)
                      .-|+.|+.|+.+..+|++-...+.+.  +.......+.||+.-+..+.+ ++||..++.   ...|-+..-.     +-.
T Consensus       620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~-sdDgtv~Vfhg~VY~Dl~qnpl-----iVP  693 (733)
T KOG0650|consen  620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASG-SDDGTVIVFHGMVYNDLLQNPL-----IVP  693 (733)
T ss_pred             CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeee-cCCCcEEEEeeeeehhhhcCCc-----eEe
Confidence            99999999999999999876433322  222333334555555554444 333333221   1122111100     112


Q ss_pred             CCccCCCCcc----ccCccccCCCCCCcCCCCCCCcCCCC
Q 006424          549 APWIRDSERF----SLGSWFSNDGPCRGSATWPAEKLPLW  584 (645)
Q Consensus       549 ~~~~~~~~~~----~~~~~fs~dg~~l~s~s~~d~~i~iW  584 (645)
                      ...+++|...    +....|.|.-.++.||.. ++.|++|
T Consensus       694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA-d~tirlf  732 (733)
T KOG0650|consen  694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA-DGTIRLF  732 (733)
T ss_pred             eeeccCceeecccceEeecccCCCceEEecCC-CceEEee
Confidence            2345555544    777889999999999988 8999998

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=1.3e-16  Score=168.52  Aligned_cols=371  Identities=23%  Similarity=0.332  Sum_probs=244.5

Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      .+..|...|.++.|.+.+..++.++.|+.+.+|+.....                                         
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----------------------------------------   98 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-----------------------------------------   98 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-----------------------------------------
Confidence            466899999999999999999999999999999988632                                         


Q ss_pred             ccCCCceeeccCc-cCeEEEEE-cCCC--eEEEEeC-CCcEEEEecCC-CeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe
Q 006424          275 IEESPLQELHGHK-GDVLDLAW-SNSN--YLLSCSM-DKTVRMWQVGC-NQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  347 (645)
Q Consensus       275 ~~~~~~~~l~~h~-~~V~~l~~-s~~~--~l~s~s~-dg~I~iwd~~~-~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s  347 (645)
                         .....+.++. ..+..+.+ ++++  .++..+. |+.+.+||... ......+ .|...|.+++|+| ++..+++++
T Consensus        99 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~  174 (466)
T COG2319          99 ---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGS  174 (466)
T ss_pred             ---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecC
Confidence               1233444433 36666666 6554  3444444 99999999997 5554444 5889999999999 888888888


Q ss_pred             C-CCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424          348 I-DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       348 ~-dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                      . |+.+++|++..+.... +..|...+.+++|+|++. .+++++.|+.+++||..........  ...    |.... ..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~--~~~----~~~~~-~~  247 (466)
T COG2319         175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST--LSG----HSDSV-VS  247 (466)
T ss_pred             CCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeee--cCC----CCcce-eE
Confidence            5 9999999999755544 556899999999999998 5555589999999987744332211  121    22332 22


Q ss_pred             EEcCCCCcEEEEEECCCeEEEEECCccee-eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCC
Q 006424          425 QFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS  503 (645)
Q Consensus       425 ~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~  503 (645)
                      .|++++ .++++++.|+.+++|+...... ......|...+.++.|+|++..+++++.|+.+.+|+...........   
T Consensus       248 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---  323 (466)
T COG2319         248 SFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT---  323 (466)
T ss_pred             eECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee---
Confidence            899997 7888999999999999874332 22224578899999999999999999999999999887664222211   


Q ss_pred             cceeeeeecCCcEEEEecCCCCcccccc-CCCCccccCccccccccCC-ccCCCCccccCccccCCCCCCcCCCCCCCcC
Q 006424          504 VRSCEHFFSEGVSVAVQWPGIGTEQKSL-CSSSLRDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGPCRGSATWPAEKL  581 (645)
Q Consensus       504 ~~~~~~~~~~g~~~~v~~s~~~~~l~~~-~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i  581 (645)
                           ...+.+.+..+.|.+++..+... ..+   ..+..|....... ........+..+.+++ .....+....++.+
T Consensus       324 -----~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  394 (466)
T COG2319         324 -----LKGHEGPVSSLSFSPDGSLLVSGGSDD---GTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTV  394 (466)
T ss_pred             -----ecccCCceEEEEECCCCCEEEEeecCC---CcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCce
Confidence                 11223345555553222333333 222   2233344433331 1111111166777877 53333312237789


Q ss_pred             CCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEecC
Q 006424          582 PLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYG  640 (645)
Q Consensus       582 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~g  640 (645)
                      .+|+.......          .................++..+++++.++++++|+...
T Consensus       395 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         395 RLWDLSTGSLL----------RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EEEecccCeee----------eeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            99998877211          11111101111122234688899999999999999764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.80  E-value=1e-18  Score=170.08  Aligned_cols=215  Identities=16%  Similarity=0.264  Sum_probs=174.1

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      +|.|..+   ..|+++|+..+.|+|||++.                                             ....+
T Consensus        84 Cv~~~s~---S~y~~sgG~~~~Vkiwdl~~---------------------------------------------kl~hr  115 (673)
T KOG4378|consen   84 CVACASQ---SLYEISGGQSGCVKIWDLRA---------------------------------------------KLIHR  115 (673)
T ss_pred             HHhhhhc---ceeeeccCcCceeeehhhHH---------------------------------------------HHHhh
Confidence            3444444   48999999999999999985                                             34457


Q ss_pred             eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCC--CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424          282 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  358 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  358 (645)
                      .+++|...|+++.|+... +|++++..|.|.|..+.++.....|.+.  ..|+-+.|+|....+|.+++.+|.|.+||+.
T Consensus       116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~  195 (673)
T KOG4378|consen  116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ  195 (673)
T ss_pred             hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence            788999999999998654 9999999999999999999988888754  4677999999666678899999999999998


Q ss_pred             CCcEEE--eeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          359 EKRVVD--WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       359 ~~~~~~--~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      +.....  ...|..+...+||+|. ..+|++.+.|..|.+||.+.... ...+.+       ..+.+.++|+++| .+|+
T Consensus       196 g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-~~~l~y-------~~Plstvaf~~~G-~~L~  266 (673)
T KOG4378|consen  196 GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-TDRLTY-------SHPLSTVAFSECG-TYLC  266 (673)
T ss_pred             CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-cceeee-------cCCcceeeecCCc-eEEE
Confidence            866554  5678889999999995 45788889999999999986543 222322       2678999999998 8999


Q ss_pred             EEECCCeEEEEECCccee-eEeecCCCCCeEEEEEecCC
Q 006424          436 ITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTG  473 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp~~  473 (645)
                      +|+..|.|..||++.... ....+.|...|++++|-|.-
T Consensus       267 aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  267 AGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             eecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            999999999999884322 22234478889999997754

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=2.1e-17  Score=153.19  Aligned_cols=280  Identities=20%  Similarity=0.275  Sum_probs=190.1

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424          203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  282 (645)
Q Consensus       203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (645)
                      ...+.|||||.-|++-+.|..+++|++.........            .+..                   .........
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~------------~~~~-------------------~~~~~~~~r  100 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA------------DGPL-------------------NFSKHLSYR  100 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCC------------CCcc-------------------ccccceeEE
Confidence            346889999999999999999999998642111000            0000                   000111111


Q ss_pred             eccCccCeEEEEEc-------CC-CeEEEEeCCCcEEEEecCCCeEEEEec---CCC---cEEEEEEeeCCCCEEEEEeC
Q 006424          283 LHGHKGDVLDLAWS-------NS-NYLLSCSMDKTVRMWQVGCNQCLNVFD---HHN---YVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       283 l~~h~~~V~~l~~s-------~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~---~v~~l~~~p~~~~~l~s~s~  348 (645)
                      + .....|...+|-       |+ +++++.+.+.-|++||.-+|+....+.   |..   ...+++|+| ||..|++|. 
T Consensus       101 ~-~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-  177 (406)
T KOG2919|consen  101 Y-QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-  177 (406)
T ss_pred             e-ccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-
Confidence            1 134567777774       44 388899999999999999999877764   444   456899999 999988765 


Q ss_pred             CCcEEEEeC-CCCcEEE--------eeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424          349 DGKVRIWGV-CEKRVVD--------WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  418 (645)
Q Consensus       349 dg~i~vwd~-~~~~~~~--------~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  418 (645)
                      ...|++||+ +.++-..        ..+..+-+.+++|+| +.+.+++|+....+-||.-........   +.    .|.
T Consensus       178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l---lg----gh~  250 (406)
T KOG2919|consen  178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL---LG----GHG  250 (406)
T ss_pred             cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee---ec----ccC
Confidence            689999999 5554221        233467799999999 455899999999988888766554322   12    346


Q ss_pred             CCeEEEEEcCCCCcEEEEEEC-CCeEEEEECCcceeeE-eecCCC---CCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          419 NKITGIQFSRDESQRIMITSE-DSKLRILDGVDVIHKF-KGLPKS---GSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~-dg~I~iwd~~~~~~~~-~~~~~~---~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +.|+.++|.++| +.|++|++ |..|-.||++.....+ ....|.   ..-.-....|++++|++|+.||.|++||+++.
T Consensus       251 gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  251 GGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL  329 (406)
T ss_pred             CCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence            899999999998 67777765 7899999988433222 222122   23334556789999999999999999999874


Q ss_pred             CcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424          494 CFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS  533 (645)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~  533 (645)
                      -...        .. .-..+..+.+|+++|--..+++++.
T Consensus       330 gn~~--------sv-~~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  330 GNEV--------SV-TGNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             CCcc--------cc-cccccccccceecCcccceeeeccC
Confidence            2111        11 1112345678888888666665444

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=2.1e-18  Score=155.46  Aligned_cols=248  Identities=15%  Similarity=0.239  Sum_probs=178.3

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      ...|++|.+.|+|+.|..+++ |.+|..-|.|++|++.+.                                        
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~----------------------------------------   45 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE----------------------------------------   45 (323)
T ss_pred             eeEeccccchheehhhccchh-hhcccccceEEEEEeecC----------------------------------------
Confidence            345679999999999987774 999999999999999873                                        


Q ss_pred             eeccCCCceeec-cCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEE----------------------------
Q 006424          273 FQIEESPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV----------------------------  323 (645)
Q Consensus       273 ~~~~~~~~~~l~-~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~----------------------------  323 (645)
                           .....+. .|...|+.+.--|++.+.+-+.|+.+.+|++.-+..+..                            
T Consensus        46 -----r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~y  120 (323)
T KOG0322|consen   46 -----RDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEY  120 (323)
T ss_pred             -----ccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheec
Confidence                 3334444 355667777766767777777888888887654211100                            


Q ss_pred             ---------------------e-----cCCCcEEEEEEeeCCCC--EEEEEeCCCcEEEEeCCCCc-----------EEE
Q 006424          324 ---------------------F-----DHHNYVTCVQFNPIDDN--YFISGSIDGKVRIWGVCEKR-----------VVD  364 (645)
Q Consensus       324 ---------------------~-----~~~~~v~~l~~~p~~~~--~l~s~s~dg~i~vwd~~~~~-----------~~~  364 (645)
                                           .     ...+.+.|..+...++.  +++.|-++|.+.+||+.++.           +..
T Consensus       121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~  200 (323)
T KOG0322|consen  121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP  200 (323)
T ss_pred             CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence                                 0     01233555554332333  46778889999999998862           223


Q ss_pred             eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEE
Q 006424          365 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  444 (645)
Q Consensus       365 ~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~  444 (645)
                      ...|..+|.++.|.+....=++|+.+..+..|++........   ...........+..+..-||+ +.+++++.|++||
T Consensus       201 ~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq---~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiR  276 (323)
T KOG0322|consen  201 NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ---IRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIR  276 (323)
T ss_pred             hhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc---ccceEEecCCCccceEEccCC-cEEeecccCCcEE
Confidence            456888999999998766667788888899998864422111   111111112568889999998 8999999999999


Q ss_pred             EEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          445 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       445 iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      ||+-++.........|...|++++|+|+...+|++|.|++|.+|++
T Consensus       277 Vyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  277 VYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9997754333333348899999999999999999999999999986

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.1e-17  Score=172.48  Aligned_cols=425  Identities=15%  Similarity=0.185  Sum_probs=259.8

Q ss_pred             ccccccccccCcEEEEEECCCC---CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCccc-----CCCCceEEecccC-C
Q 006424          191 YTSQEIQAHKGCIWTLKFSPDG---RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS-----NAKEGKIKFGKKK-S  261 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fspdg---~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~  261 (645)
                      ...+.|.+|..+++.+.+.|..   .++++++.||.|++||...+......-..-.....     ........+.... .
T Consensus        48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~  127 (792)
T KOG1963|consen   48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDY  127 (792)
T ss_pred             hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccc
Confidence            3556799999999999998854   47889999999999999876543322211111000     0000011100000 0


Q ss_pred             CcceeecCC---Cc--ee---ccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEE-E----ecCCC
Q 006424          262 SHVPVVIPD---EV--FQ---IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN-V----FDHHN  328 (645)
Q Consensus       262 ~~~~~~~~~---~~--~~---~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~-~----~~~~~  328 (645)
                      .........   ..  +.   ........+..|.. -.++.+++.+.+.....+..+.+|+..++.... .    ..|..
T Consensus       128 ~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf  206 (792)
T KOG1963|consen  128 SILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTF  206 (792)
T ss_pred             eeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcc
Confidence            000000000   00  00   00111112223322 356777777877777778889999998755111 1    13677


Q ss_pred             cEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-----CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce
Q 006424          329 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  403 (645)
Q Consensus       329 ~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-----~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~  403 (645)
                      .++|.+++| +++++++|..||.|.+|.--.     ..+..+.-|...|+++.|+++|.+|++|+..|.+.+|.+.++..
T Consensus       207 ~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k  285 (792)
T KOG1963|consen  207 NITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK  285 (792)
T ss_pred             cceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc
Confidence            799999999 999999999999999995322     33555778999999999999999999999999999999998873


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--eeEee---------cCCCCCeEEEEEecC
Q 006424          404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKG---------LPKSGSQMSASFTTT  472 (645)
Q Consensus       404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~---------~~~~~~i~~v~~sp~  472 (645)
                      ...    +    .-+++|..+.++||+ .+.+....|+.|.+....+..  ....+         ....+-.+.++++|.
T Consensus       286 qfL----P----RLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr  356 (792)
T KOG1963|consen  286 QFL----P----RLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR  356 (792)
T ss_pred             ccc----c----ccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC
Confidence            221    1    124899999999997 788888899999998753211  11111         112445678899997


Q ss_pred             CCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCC------cEEEEecCCCCccccccCCC-------Ccccc
Q 006424          473 GKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG------VSVAVQWPGIGTEQKSLCSS-------SLRDC  539 (645)
Q Consensus       473 ~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~v~~s~~~~~l~~~~~~-------~~~~~  539 (645)
                      -+.++-.+..|.|.+||+-+.......+.     +..-..+|      .+++++.+-.|..+++...-       .....
T Consensus       357 ~~~~vln~~~g~vQ~ydl~td~~i~~~~v-----~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~  431 (792)
T KOG1963|consen  357 TNSLVLNGHPGHVQFYDLYTDSTIYKLQV-----CDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS  431 (792)
T ss_pred             CCceeecCCCceEEEEeccccceeeeEEE-----EeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence            78888889999999999976542211110     00011111      24566666667777654321       11334


Q ss_pred             CccccccccCC-------ccCCCCccccCccccC-CCC-CCcCCCCCCCcCCCCCCccCC------CCCcCChhhhHhhh
Q 006424          540 SQKWDNLETAP-------WIRDSERFSLGSWFSN-DGP-CRGSATWPAEKLPLWDVTIDS------DGYCQDPQQQRLQQ  604 (645)
Q Consensus       540 ~~~w~~~~~~~-------~~~~~~~~~~~~~fs~-dg~-~l~s~s~~d~~i~iWd~~~~~------~~~~~~~~~~~~~~  604 (645)
                      +++|.......       ....|+.......|.+ ... ..++++. ++.+++|-.+..+      ....|     +...
T Consensus       432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~-dg~~KiW~~~~~~n~~k~~s~W~c-----~~i~  505 (792)
T KOG1963|consen  432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASV-DGDFKIWVFTDDSNIYKKSSNWTC-----KAIG  505 (792)
T ss_pred             EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEecc-CCeEEEEEEecccccCcCccceEE-----eeee
Confidence            67787744433       2233443333334443 333 6677777 8999999874432      22222     1111


Q ss_pred             hhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424          605 QCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       605 ~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                      .++........| +.|| .++++|.|++|.+|+-.
T Consensus       506 sy~k~~i~a~~f-s~dG-slla~s~~~~Itiwd~~  538 (792)
T KOG1963|consen  506 SYHKTPITALCF-SQDG-SLLAVSFDDTITIWDYD  538 (792)
T ss_pred             ccccCcccchhh-cCCC-cEEEEecCCEEEEecCC
Confidence            122222222233 4477 58889999999999843

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.79  E-value=6.2e-18  Score=161.39  Aligned_cols=294  Identities=19%  Similarity=0.310  Sum_probs=195.5

Q ss_pred             CCCCCCccchhHhhhcccccccc--cccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCC
Q 006424          165 PNSEKPKANKMEVKQNKKKCMEF--TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD  242 (645)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~  242 (645)
                      ...+...+..++.|.-......-  ........|..|..+|+++.|+|+|..||||+++|.|.+|........     ..
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-----~~  102 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-----DA  102 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-----cc
Confidence            33444444555555443332222  233445678899999999999999999999999999999987641110     00


Q ss_pred             CCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEE
Q 006424          243 GGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL  321 (645)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~  321 (645)
                      ..-.                        ............+.+|...|..++|+|++ ++++++.|.++++||+..|+..
T Consensus       103 d~e~------------------------~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~  158 (434)
T KOG1009|consen  103 DTEA------------------------DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL  158 (434)
T ss_pred             cchh------------------------hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE
Confidence            0000                        00000123356778899999999999997 8999999999999999999999


Q ss_pred             EEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec------------------------cCCCeEEEE
Q 006424          322 NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD------------------------VRDVISAIC  376 (645)
Q Consensus       322 ~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~------------------------~~~~v~~l~  376 (645)
                      ..+. |...+..++|.| -++++++-+.|...+.+.+...+.....+                        ...-...++
T Consensus       159 ~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls  237 (434)
T KOG1009|consen  159 AILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS  237 (434)
T ss_pred             eeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence            8885 999999999999 88999999999888887775543222111                        112255678


Q ss_pred             EccCCCEEEEEec----CC-----eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC--------C--------C
Q 006424          377 YIPDGKGFIVGSI----TG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD--------E--------S  431 (645)
Q Consensus       377 ~sp~g~~l~~g~~----dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~--------g--------~  431 (645)
                      |+|+|.++++.+.    ++     ..++|+-.....+...+...      ..+...+.|+|-        .        .
T Consensus       238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~------~k~~lavr~~pVy~elrp~~~~~~~~~lpy  311 (434)
T KOG1009|consen  238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP------KKPALAVRFSPVYYELRPLSSEKFLFVLPY  311 (434)
T ss_pred             cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC------CcceEEEEeeeeEEEecccccccccccccc
Confidence            9999999988542    22     23455444333332222111      123333443331        0        0


Q ss_pred             cEEEEEECCCeEEEEECCcceeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          432 QRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       432 ~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      +++++....+.|++||.......+.. .-|-..++.++|++||.+|+..|.||...+--++..+
T Consensus       312 rlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  312 RLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             ceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence            23444444568999998763332221 2378899999999999999999999988877776654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=8.6e-19  Score=187.56  Aligned_cols=201  Identities=17%  Similarity=0.290  Sum_probs=157.5

Q ss_pred             ccCeEEEEEcCC-----CeEEEEeCCCcEEEEecCC---CeEE---EEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          287 KGDVLDLAWSNS-----NYLLSCSMDKTVRMWQVGC---NQCL---NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       287 ~~~V~~l~~s~~-----~~l~s~s~dg~I~iwd~~~---~~~~---~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      ....+.++|.+.     |.|+.|..||.|.+||...   +...   ..+ .|++.|..+.|++..++.||+|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            456778899753     4689999999999999865   2222   222 399999999999977889999999999999


Q ss_pred             EeCCCCcEEE---eeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          355 WGVCEKRVVD---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       355 wd~~~~~~~~---~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      ||+...+.-.   .....+.|.+++|+.. ...|++++.+|.+.|||++..+..+. +.....    ...+..+.|+|++
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~-ls~~~~----~~~~S~l~WhP~~  218 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK-LSDTPG----RMHCSVLAWHPDH  218 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc-cccCCC----ccceeeeeeCCCC
Confidence            9998744322   2234678999999884 45788889999999999998865443 222211    1457899999998


Q ss_pred             CcEEEEEECCC---eEEEEECC---cceeeEeecCCCCCeEEEEEecCC-CEEEEEeCCccEEEEeCCCCC
Q 006424          431 SQRIMITSEDS---KLRILDGV---DVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       431 ~~~l~~~s~dg---~I~iwd~~---~~~~~~~~~~~~~~i~~v~~sp~~-~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      ...+++++.|.   .|.+||++   ...+++.+  |...|.++.|++.+ .+|++++.|++|.+|+.++++
T Consensus       219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE  287 (1049)
T KOG0307|consen  219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE  287 (1049)
T ss_pred             ceeeeeecCCCCCceeEeecccccCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence            88888888774   79999987   35555544  88999999999976 899999999999999999874

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.78  E-value=2.4e-19  Score=167.37  Aligned_cols=366  Identities=16%  Similarity=0.180  Sum_probs=252.1

Q ss_pred             ccchhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCc
Q 006424           92 ANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPK  171 (645)
Q Consensus        92 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (645)
                      .-.|++.++||++.++.....|.+.+ +.+++.            |.++|.|+|+...++++++++.+..+....++..+
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~g-v~~~s~------------drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e   79 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEG-VISVSE------------DRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE   79 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCC-eEEccc------------cceeeeEEeccccccCchhhhhCCCCceEeeeecc
Confidence            34588899999999999999999999 999999            99999999999999999999999999999999888


Q ss_pred             cchhHhhhcccccccc------cccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCc
Q 006424          172 ANKMEVKQNKKKCMEF------TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF  245 (645)
Q Consensus       172 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~  245 (645)
                      ...+-+.+......++      +.+...+....|.+.|..+-|+-...++++.+.|..+..--.+.+.....+.......
T Consensus        80 ~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t  159 (404)
T KOG1409|consen   80 SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPAS  159 (404)
T ss_pred             ceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCC
Confidence            8888888777765554      6677778888999999999999999999999999987665555544433222111111


Q ss_pred             ccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC--CCeEEE
Q 006424          246 GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLN  322 (645)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~--~~~~~~  322 (645)
                      ....... ..|..+........   ++....-.++..+.+|.+.+.+++|.+.+ .|++|..|..|.+||+.  ++....
T Consensus       160 ~~~~d~~-~~fvGd~~gqvt~l---r~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e  235 (404)
T KOG1409|consen  160 ALQFDAL-YAFVGDHSGQITML---KLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE  235 (404)
T ss_pred             CCceeeE-EEEecccccceEEE---EEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee
Confidence            1011111 33444333333221   11222346678899999999999999865 89999999999999995  455566


Q ss_pred             EecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCc
Q 006424          323 VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  402 (645)
Q Consensus       323 ~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~  402 (645)
                      .++|.+.|..+...+ ....+++++.||.|.+||++..+.....-..+.-..              .=..-.+|+++..-
T Consensus       236 l~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ--------------~c~qpffwn~~~m~  300 (404)
T KOG1409|consen  236 LQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQ--------------KCNQPFFWNFRQMW  300 (404)
T ss_pred             eccchhhhhhhhhhh-hheeeeeccCCCeEEEEeccceeecCccccccchhh--------------hhCchHHHHHHHHH
Confidence            678999999998887 778899999999999999977655432111110000              00112344443211


Q ss_pred             eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC---------cceeeEeecCCCCCeEEEEEecCC
Q 006424          403 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV---------DVIHKFKGLPKSGSQMSASFTTTG  473 (645)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~---------~~~~~~~~~~~~~~i~~v~~sp~~  473 (645)
                      . ...+....+...+.+...+...+.+. ....+.+..-.+|+.|.-         .+...  .+.-...|+.+.+..+-
T Consensus       301 ~-~k~~glr~h~crkcg~avc~~c~s~~-~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~--phei~tgItamhlqetl  376 (404)
T KOG1409|consen  301 D-RKQLGLRQHHCRKCGKAVCGKCSSNR-SSYPTMGFEFSVRVCDSCYPTIKDEERTPLAI--PHEIKTGITAMHLQETL  376 (404)
T ss_pred             h-hhhhhhhhhhhhhhhhhcCcccccCc-cccccccceeEEEEecccchhhhcCCCCcccc--ccccccceeEEEhhhhc
Confidence            1 11122223333333333333333332 345555666667776621         11222  23345679999999999


Q ss_pred             CEEEEEeCCccEEEEeCCCC
Q 006424          474 KHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       474 ~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .+|+|+|.|..|+|||+.+-
T Consensus       377 glLvTsG~~Rvi~iwd~~~v  396 (404)
T KOG1409|consen  377 GLLVTSGTDRVIKIWDVRSV  396 (404)
T ss_pred             cceeecCCceEEEEEechhh
Confidence            99999999999999998754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.1e-18  Score=166.84  Aligned_cols=288  Identities=20%  Similarity=0.277  Sum_probs=213.0

Q ss_pred             cccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424          188 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  267 (645)
Q Consensus       188 ~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (645)
                      .++.+...|.+|.|.|+.+.|+..|..|++||.|..|.+||+..+.                                  
T Consensus       130 qr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~----------------------------------  175 (559)
T KOG1334|consen  130 QRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS----------------------------------  175 (559)
T ss_pred             HHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC----------------------------------
Confidence            4555677799999999999999999999999999999999998731                                  


Q ss_pred             cCCCceeccCCCceeeccCccCeEEEEEcCC---CeEEEEeCCCcEEEEecC-CCeEE---EEecCCCcEEEEEEeeCCC
Q 006424          268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVG-CNQCL---NVFDHHNYVTCVQFNPIDD  340 (645)
Q Consensus       268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~---~~l~s~s~dg~I~iwd~~-~~~~~---~~~~~~~~v~~l~~~p~~~  340 (645)
                                ..+.-..||...|....|-|.   ..+++++.||.|++=.+. ++.+.   ....|.++|..++.-|.+.
T Consensus       176 ----------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp  245 (559)
T KOG1334|consen  176 ----------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP  245 (559)
T ss_pred             ----------cccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCC
Confidence                      223334578888888888874   379999999999998774 34333   2235999999999999888


Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEEE----eeccCC---CeEEEEEccCCC-EEEEEecCCeEEEEEecCCcee-----eeE
Q 006424          341 NYFISGSIDGKVRIWGVCEKRVVD----WADVRD---VISAICYIPDGK-GFIVGSITGTCHFYKASGNDLK-----LEK  407 (645)
Q Consensus       341 ~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~---~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~-----~~~  407 (645)
                      .-|.+++.|+.+.-+|++.+....    ...+..   ..++++.+|... .+++|+.|-.+++||.+.-...     ...
T Consensus       246 ~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~  325 (559)
T KOG1334|consen  246 KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDK  325 (559)
T ss_pred             CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhh
Confidence            889999999999999998755322    222222   577889999554 8999999999999998754332     111


Q ss_pred             EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--------------cce-eeEeecCCCCCeEEEEE-ec
Q 006424          408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--------------DVI-HKFKGLPKSGSQMSASF-TT  471 (645)
Q Consensus       408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--------------~~~-~~~~~~~~~~~i~~v~~-sp  471 (645)
                      +..+.........|++++|+.++ .-++++..|-.|+++.-.              ... +.++++.+...|.++-| .|
T Consensus       326 f~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP  404 (559)
T KOG1334|consen  326 FCPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP  404 (559)
T ss_pred             cCCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC
Confidence            11111111334679999999887 567777778889999621              112 23677777777888875 78


Q ss_pred             CCCEEEEEeCCccEEEEeCCCCCcCC-CcccCCcceeeeeecCCcEEEEe
Q 006424          472 TGKHIISIGDDCRVYVWNYDELCFPS-SKQKNSVRSCEHFFSEGVSVAVQ  520 (645)
Q Consensus       472 ~~~~l~t~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~v~  520 (645)
                      ...|+++||+-|.|.||+-.+++... ......++.|+..||.-+++|.+
T Consensus       405 rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS  454 (559)
T KOG1334|consen  405 RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS  454 (559)
T ss_pred             ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence            89999999999999999998886332 23334477777777766665443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.77  E-value=8.7e-17  Score=147.03  Aligned_cols=230  Identities=17%  Similarity=0.306  Sum_probs=172.7

Q ss_pred             cCccCeEEEEEcCCC------eEEEEeCCCcEEEEecCC--CeEE--EEe------cCCCcEEEEEEeeCCCCEEEEEeC
Q 006424          285 GHKGDVLDLAWSNSN------YLLSCSMDKTVRMWQVGC--NQCL--NVF------DHHNYVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~------~l~s~s~dg~I~iwd~~~--~~~~--~~~------~~~~~v~~l~~~p~~~~~l~s~s~  348 (645)
                      .|..+++.+.|.|+.      +|+|++  ..+++|.+..  .+..  ..+      .+..++++..|+..+.+++.+++-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            589999999999863      344443  4799999863  2211  111      266789999999989999999999


Q ss_pred             CCcEEEEeCCCCc----EEEeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424          349 DGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  423 (645)
Q Consensus       349 dg~i~vwd~~~~~----~~~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (645)
                      |-+..|||+.++.    ..++..|...|..++|...+. .||+.+.||.+++||++..........-..    ...+...
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~----~~~pLlR  247 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS----PSTPLLR  247 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC----CCCccee
Confidence            9999999999873    334789999999999998654 788999999999999997765433222221    1367889


Q ss_pred             EEEcCCCCcEEEEEECC-CeEEEEECCc-ceeeEeecCCCCCeEEEEEecC-CCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424          424 IQFSRDESQRIMITSED-SKLRILDGVD-VIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSSKQ  500 (645)
Q Consensus       424 i~~s~~g~~~l~~~s~d-g~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~-~~~l~t~s~dg~I~iwd~~~~~~~~~~~  500 (645)
                      ++|++...+++++-..| ..|.|.|++. .........|.+.|++++|.|. ..+|.|+|+|..+.|||+...-...   
T Consensus       248 LswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~---  324 (364)
T KOG0290|consen  248 LSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN---  324 (364)
T ss_pred             eccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC---
Confidence            99999888899987776 5899999883 2333344559999999999996 5689999999999999998653211   


Q ss_pred             cCCcceeeeeecCCcEEEEecCCCC
Q 006424          501 KNSVRSCEHFFSEGVSVAVQWPGIG  525 (645)
Q Consensus       501 ~~~~~~~~~~~~~g~~~~v~~s~~~  525 (645)
                        .......+...+.+..+.|++..
T Consensus       325 --~~dPilay~a~~EVNqi~Ws~~~  347 (364)
T KOG0290|consen  325 --GEDPILAYTAGGEVNQIQWSSSQ  347 (364)
T ss_pred             --CCCchhhhhccceeeeeeecccC
Confidence              11122334456778889998543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.3e-17  Score=154.24  Aligned_cols=191  Identities=14%  Similarity=0.227  Sum_probs=150.3

Q ss_pred             CeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEeCCCCcEE---EeeccC-CCe
Q 006424          299 NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI-DDNYFISGSIDGKVRIWGVCEKRVV---DWADVR-DVI  372 (645)
Q Consensus       299 ~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~-~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~-~~v  372 (645)
                      ..++++-..|.|++||..+++.+..|. ++..++.+.|... .++.+.+|+.||+|++||+|.....   .+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            468888889999999999999999986 7777888888753 4678999999999999999975433   233333 567


Q ss_pred             EEEEEccCCCEEEEEec----CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC
Q 006424          373 SAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  448 (645)
Q Consensus       373 ~~l~~sp~g~~l~~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~  448 (645)
                      .+++.+..++.+++|+.    +-.+.+||++..+....     .-...|...|++++|+|..+++|++||.||.|.+||+
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~-----~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLR-----QLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhh-----hhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            77777778888988864    67899999998876432     2233456899999999999999999999999999998


Q ss_pred             Ccc---eeeEeecCCCCCeEEEEEecCC-CEEEEEeCCccEEEEeCCCCC
Q 006424          449 VDV---IHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       449 ~~~---~~~~~~~~~~~~i~~v~~sp~~-~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      ...   -.......+...|..+.|..++ +.|.+-+..++..+|+++.+.
T Consensus       196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            732   1222233466779999998876 568888899999999999885

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=5.2e-17  Score=154.38  Aligned_cols=206  Identities=19%  Similarity=0.271  Sum_probs=161.5

Q ss_pred             ceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeE-------E-EEecCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          280 LQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC-------L-NVFDHHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~-------~-~~~~~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                      .-.+.||+++|..++|+|-  ..++|||.|.+|.||++..+..       + ...+|...|.-++|+|.-.+.|++++.|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            4456799999999999974  4899999999999999865432       2 3336999999999999888999999999


Q ss_pred             CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      .+|.+|++.+++.+-...|.+.|.+++|+.||.++++.+.|..|++||.+.+....+.....      +..-..+.|-.+
T Consensus       154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he------G~k~~Raifl~~  227 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE------GAKPARAIFLAS  227 (472)
T ss_pred             ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc------CCCcceeEEecc
Confidence            99999999999877767799999999999999999999999999999999988754432222      345566778888


Q ss_pred             CCcEEEEEE---CCCeEEEEECC---cceeeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCC
Q 006424          430 ESQRIMITS---EDSKLRILDGV---DVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  493 (645)
Q Consensus       430 g~~~l~~~s---~dg~I~iwd~~---~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~  493 (645)
                      | .++.+|-   .+..+-+||..   ++...... .....|.---|++|.+.++.+| .|+.|+-|.+.+.
T Consensus       228 g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  228 G-KIFTTGFSRMSERQIALWDPNNLEEPIALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             C-ceeeeccccccccceeccCcccccCcceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence            7 4444442   36789999955   33322222 2445566566788988877665 6999999999765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=4.3e-17  Score=154.41  Aligned_cols=208  Identities=19%  Similarity=0.307  Sum_probs=165.5

Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC------CCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG------CNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~------~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                      +.+.+|.+.|+++.|+.++ +|++|+.|..+++|+++      +.+++...+  |.+.|.|++|.- ....+++|..+++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcce
Confidence            4567899999999999877 89999999999999984      346666665  567899999998 7788999999999


Q ss_pred             EEEEeCCCCcEEEeeccCC---CeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          352 VRIWGVCEKRVVDWADVRD---VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       352 i~vwd~~~~~~~~~~~~~~---~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      |...|+.+.+.+....+..   .|+.+..+|-.+.|++.+.+|.|.+||.+....+...+....    .+.....+.|+|
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN----~~~~F~t~~F~P  204 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN----SGKNFYTAEFHP  204 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC----CCccceeeeecC
Confidence            9999999999888776655   899999999999999999999999999997765444333222    246678899999


Q ss_pred             CCCcEEEEEECCCeEEEEECCcceeeE------eecCC-CCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          429 DESQRIMITSEDSKLRILDGVDVIHKF------KGLPK-SGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~------~~~~~-~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ..+.+|++.+..+.+.+||.+.....+      .+... ...-.++.|+|+|..+.+--....-.+||+.+.
T Consensus       205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~  276 (609)
T KOG4227|consen  205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ  276 (609)
T ss_pred             CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc
Confidence            988999999999999999987432221      11111 223367889999999888766666677777664

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.4e-17  Score=154.10  Aligned_cols=187  Identities=19%  Similarity=0.336  Sum_probs=146.4

Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEE
Q 006424          213 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  292 (645)
Q Consensus       213 ~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  292 (645)
                      ..+|++...|.|++||..+                                             ++.+..+++|...++.
T Consensus        41 ~~vav~lSngsv~lyd~~t---------------------------------------------g~~l~~fk~~~~~~N~   75 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT---------------------------------------------GQLLEEFKGPPATTNG   75 (376)
T ss_pred             eeEEEEecCCeEEEEeccc---------------------------------------------hhhhheecCCCCcccc
Confidence            5788999999999999987                                             5668889999999999


Q ss_pred             EEEcCC---CeEEEEeCCCcEEEEecCCCeEEEEec---CC-CcEEEEEEeeCCCCEEEEEeC----CCcEEEEeCCCCc
Q 006424          293 LAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFD---HH-NYVTCVQFNPIDDNYFISGSI----DGKVRIWGVCEKR  361 (645)
Q Consensus       293 l~~s~~---~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~-~~v~~l~~~p~~~~~l~s~s~----dg~i~vwd~~~~~  361 (645)
                      +.|..+   ..+.+|+.||+|++||++.......+.   ++ .+..|++.+- .++++++|..    +-.|.+||+|..+
T Consensus        76 vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q  154 (376)
T KOG1188|consen   76 VRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQ  154 (376)
T ss_pred             eEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEecccc
Confidence            999763   278999999999999998876655442   33 4677777765 6777877754    5679999999866


Q ss_pred             E-EE--eeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006424          362 V-VD--WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  437 (645)
Q Consensus       362 ~-~~--~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~  437 (645)
                      . +.  ...|.+.|++++|+| +-+.|++|+.||.+.+||+......-.    .-+...+...|.++.|..++...+.+-
T Consensus       155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa----L~~viN~~sSI~~igw~~~~ykrI~cl  230 (376)
T KOG1188|consen  155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA----LLHVINHGSSIHLIGWLSKKYKRIMCL  230 (376)
T ss_pred             chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh----HHHhhcccceeeeeeeecCCcceEEEE
Confidence            5 33  567999999999999 456999999999999999986532111    111223456799999998876678899


Q ss_pred             ECCCeEEEEECC
Q 006424          438 SEDSKLRILDGV  449 (645)
Q Consensus       438 s~dg~I~iwd~~  449 (645)
                      +...+..+|++.
T Consensus       231 TH~Etf~~~ele  242 (376)
T KOG1188|consen  231 THMETFAIYELE  242 (376)
T ss_pred             EccCceeEEEcc
Confidence            999999999754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=2e-18  Score=177.88  Aligned_cols=240  Identities=25%  Similarity=0.424  Sum_probs=186.8

Q ss_pred             cccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       190 ~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      +...+.|.+|..+|.|+.|...|.++++|+.|..++||..++                                      
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et--------------------------------------  221 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET--------------------------------------  221 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccc--------------------------------------
Confidence            345566889999999999999999999999999999999887                                      


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  347 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s  347 (645)
                             ...+....||.+.|+.++.+.++ .++++|.|..|++|.+.++.++..+ +|++.|++++|+| -    .+.+
T Consensus       222 -------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP-~----~sss  289 (1113)
T KOG0644|consen  222 -------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP-R----ASSS  289 (1113)
T ss_pred             -------hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc-c----ccCC
Confidence                   45677889999999999998777 8899999999999999999998877 5999999999999 2    3778


Q ss_pred             CCCcEEEEeCCCCcEEEe-----eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424          348 IDGKVRIWGVCEKRVVDW-----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       348 ~dg~i~vwd~~~~~~~~~-----~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      .||++++||.+-......     ......+.++.|...+..+++|+.|+.-..|.+......-             ..+.
T Consensus       290 ~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-------------~~li  356 (1113)
T KOG0644|consen  290 DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS-------------NLLI  356 (1113)
T ss_pred             CCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc-------------cceE
Confidence            899999999982222211     2234567788888889999999999988887665332211             1111


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCE-EEEEeCCccEEEEeCCCCC
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKH-IISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~-l~t~s~dg~I~iwd~~~~~  494 (645)
                      -+.++.+-..+.+++-.+-.+.+|++.+.  .+...+  |...+..+.++|-... ..+++.||.+.|||+-.+-
T Consensus       357 f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~  429 (1113)
T KOG0644|consen  357 FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI  429 (1113)
T ss_pred             EEeccccccccceeeeeeeEeeeeecccchhhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence            22222232256777778889999997755  444444  7778888999996554 5678899999999998773

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.75  E-value=3.4e-16  Score=149.63  Aligned_cols=291  Identities=17%  Similarity=0.263  Sum_probs=196.1

Q ss_pred             cCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          200 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       200 ~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      ..+|.++.|.++.. .||||+.|..|++|.+........             ...                       -.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------------~~~-----------------------V~   56 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------------DMK-----------------------VE   56 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------------cee-----------------------EE
Confidence            35799999999876 999999999999999876321100             000                       12


Q ss_pred             CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC--------C-----C---eEEEEe-cCCCcEEEEEEeeCCC
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--------C-----N---QCLNVF-DHHNYVTCVQFNPIDD  340 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~--------~-----~---~~~~~~-~~~~~v~~l~~~p~~~  340 (645)
                      .+..+..|...|+++.|+|+| .|+||+.+|.|.+|-..        +     .   ...+.. .|...|..++|+| ++
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~  135 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DS  135 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CC
Confidence            245677899999999999998 99999999999999765        2     1   111222 4889999999999 99


Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE--eeccc-c--
Q 006424          341 NYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV--DFHDR-K--  414 (645)
Q Consensus       341 ~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~-~--  414 (645)
                      +++++++.|..+++||+..+.+.. ...|...+..++|.|-++++++-+.|...+.+.+.........-  ..... .  
T Consensus       136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~  215 (434)
T KOG1009|consen  136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE  215 (434)
T ss_pred             ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence            999999999999999999999877 66789999999999999999999999877777765443322110  01100 0  


Q ss_pred             -----------ccCCCCeEEEEEcCCCCcEEEEEEC----C-----CeEEEEECCccee-eEeecCCCCCeEEEEEec--
Q 006424          415 -----------KTSGNKITGIQFSRDESQRIMITSE----D-----SKLRILDGVDVIH-KFKGLPKSGSQMSASFTT--  471 (645)
Q Consensus       415 -----------~~~~~~i~~i~~s~~g~~~l~~~s~----d-----g~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp--  471 (645)
                                 ..-......++|+|+| .++++.+.    +     +..++++.....+ .........+...+.|+|  
T Consensus       216 ~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy  294 (434)
T KOG1009|consen  216 REGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVY  294 (434)
T ss_pred             CCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeE
Confidence                       0011234567899998 67776543    2     2345665332111 111111333444444443  


Q ss_pred             ----------------CCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCC
Q 006424          472 ----------------TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS  535 (645)
Q Consensus       472 ----------------~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~  535 (645)
                                      .+-.+|.++ ...|+|||.+......      .+.-+++   ..++.++|++||..|+..+.|+
T Consensus       295 ~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~------~v~nihy---~~iTDiaws~dg~~l~vSS~DG  364 (434)
T KOG1009|consen  295 YELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLA------VVDNIHY---SAITDIAWSDDGSVLLVSSTDG  364 (434)
T ss_pred             EEeccccccccccccccceEEEEee-cceEEEeccccccceE------EEeeeee---eeecceeecCCCcEEEEeccCC
Confidence                            223344444 5689999987652111      1111233   3478899999999999877776


Q ss_pred             ccc
Q 006424          536 LRD  538 (645)
Q Consensus       536 ~~~  538 (645)
                      ...
T Consensus       365 yCS  367 (434)
T KOG1009|consen  365 FCS  367 (434)
T ss_pred             ceE
Confidence            543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.75  E-value=9.7e-17  Score=146.54  Aligned_cols=257  Identities=16%  Similarity=0.244  Sum_probs=184.3

Q ss_pred             cccccccccCcEEEEEECCC-CCEEEEEeCC-------CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCc
Q 006424          192 TSQEIQAHKGCIWTLKFSPD-GRYLASGGED-------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  263 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspd-g~~L~sgs~D-------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (645)
                      ..+.|..|.+.|+.++-+|- .+.|+|+..|       -.+.||.+.........                         
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-------------------------  109 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-------------------------  109 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc-------------------------
Confidence            44567789999999999995 5577776542       23678877652111000                         


Q ss_pred             ceeecCCCceeccCCCceeec-cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE-EEEe------cCCCcEEEEE
Q 006424          264 VPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC-LNVF------DHHNYVTCVQ  334 (645)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~-~~~~------~~~~~v~~l~  334 (645)
                                 .....+..+. .+-+.|.|+.|.|++ .+++-. |..|.+|++..+.. +..+      ++....++-+
T Consensus       110 -----------~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~  177 (370)
T KOG1007|consen  110 -----------STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGA  177 (370)
T ss_pred             -----------chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccc
Confidence                       0012223333 355689999999987 666555 88999999987655 3332      2556778889


Q ss_pred             Eee-CCCCEEEEEeCCCcEEEEeCCCCcEEE--eeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEee
Q 006424          335 FNP-IDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDF  410 (645)
Q Consensus       335 ~~p-~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~  410 (645)
                      |+| .+++.+++.+ |+++..||+++.....  -..|...|..+.|+|+.+ +|++++.||.|++||.+..+.+.....-
T Consensus       178 WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~  256 (370)
T KOG1007|consen  178 WSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG  256 (370)
T ss_pred             cCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC
Confidence            999 5677777665 8999999999866543  345778899999999876 6778899999999999988776554333


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-----------------------cee------eEeecCCC
Q 006424          411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-----------------------VIH------KFKGLPKS  461 (645)
Q Consensus       411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-----------------------~~~------~~~~~~~~  461 (645)
                            |...+.++.|+|...+++++++.|..|.+|....                       ...      .-....|.
T Consensus       257 ------HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE  330 (370)
T KOG1007|consen  257 ------HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE  330 (370)
T ss_pred             ------CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence                  4579999999998778999999999999995210                       000      01123478


Q ss_pred             CCeEEEEEecCCCE-EEEEeCCccEEEEeCCC
Q 006424          462 GSQMSASFTTTGKH-IISIGDDCRVYVWNYDE  492 (645)
Q Consensus       462 ~~i~~v~~sp~~~~-l~t~s~dg~I~iwd~~~  492 (645)
                      ..|.+++||.-..+ +|+-|.||++.|=++..
T Consensus       331 DSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  331 DSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            89999999886665 56778999999876653

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.75  E-value=1.1e-15  Score=164.19  Aligned_cols=265  Identities=11%  Similarity=0.165  Sum_probs=178.5

Q ss_pred             cccccccccccccccCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcc
Q 006424          186 EFTALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV  264 (645)
Q Consensus       186 ~~~~~~~~~~l~~H~~~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (645)
                      |..+-.++..|..|+..|..++.+++. .+++|||.||+|++|+.........                           
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~--------------------------- 1086 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG--------------------------- 1086 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc---------------------------
Confidence            445555777889999999999998765 8999999999999999876321100                           


Q ss_pred             eeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE-------EEEec--CCC-cEEEE
Q 006424          265 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC-------LNVFD--HHN-YVTCV  333 (645)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~-------~~~~~--~~~-~v~~l  333 (645)
                                 ..+...++..-...+.++...+.+ .++.++.||.|++.+++....       .....  ..+ .|..-
T Consensus      1087 -----------s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~ 1155 (1431)
T KOG1240|consen 1087 -----------SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMH 1155 (1431)
T ss_pred             -----------eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEee
Confidence                       011223333346678888887766 899999999999999875211       11111  222 33344


Q ss_pred             EEeeCCCC-EEEEEeCCCcEEEEeCCCCcEE---EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424          334 QFNPIDDN-YFISGSIDGKVRIWGVCEKRVV---DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD  409 (645)
Q Consensus       334 ~~~p~~~~-~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~  409 (645)
                      +|...... .++.+..-+.|..||+++....   +.....+.|++++.+|.++++++|+..|.+.+||++=... ...+.
T Consensus      1156 a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~-i~sw~ 1234 (1431)
T KOG1240|consen 1156 AFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP-ILSWE 1234 (1431)
T ss_pred             cccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce-eeccc
Confidence            45443344 6888888899999999886543   3344567899999999999999999999999999985443 33333


Q ss_pred             eccccccCCCCeEEEEEcCCCC--cE-EEEEE-CCCeEEEEECCcceeeEeec-------------------CCCCCeEE
Q 006424          410 FHDRKKTSGNKITGIQFSRDES--QR-IMITS-EDSKLRILDGVDVIHKFKGL-------------------PKSGSQMS  466 (645)
Q Consensus       410 ~~~~~~~~~~~i~~i~~s~~g~--~~-l~~~s-~dg~I~iwd~~~~~~~~~~~-------------------~~~~~i~~  466 (645)
                      +..     ..++..+..+|--+  .. +.+++ ..+.|.+|++.........-                   .+.-....
T Consensus      1235 ~P~-----~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~ 1309 (1431)
T KOG1240|consen 1235 HPA-----RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGIS 1309 (1431)
T ss_pred             Ccc-----cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCccccee
Confidence            333     26677777665422  34 44444 57899999976433222211                   11112223


Q ss_pred             EEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          467 ASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       467 v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      ..+..-+.++.+|+.|+.|+.||....+
T Consensus      1310 ~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1310 CGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             eecccCCceeeecCCccceeeccCCCcc
Confidence            3444456789999999999999988763

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.74  E-value=2.4e-16  Score=164.80  Aligned_cols=250  Identities=18%  Similarity=0.178  Sum_probs=182.8

Q ss_pred             ccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          199 HKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       199 H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      -...|+|+.|+| +..+||.|+.+|.|.+||+..+.....                                       .
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~---------------------------------------s  281 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP---------------------------------------S  281 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC---------------------------------------c
Confidence            456899999999 466888999999999999987432100                                       0


Q ss_pred             CCceeeccCccCeEEEEEcCC---CeEEEEeCCCcEEEEecCCCeE------EEEe-------cCCCcEEEEEEeeCCCC
Q 006424          278 SPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQC------LNVF-------DHHNYVTCVQFNPIDDN  341 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~---~~l~s~s~dg~I~iwd~~~~~~------~~~~-------~~~~~v~~l~~~p~~~~  341 (645)
                      ..-.....|..+|+.+.|..+   .-+++++.||.|..|+++.-..      ....       .....+++++|.+.+.+
T Consensus       282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~  361 (555)
T KOG1587|consen  282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN  361 (555)
T ss_pred             ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc
Confidence            111223469999999999754   2599999999999998763221      1111       12346899999998899


Q ss_pred             EEEEEeCCCcEEEEeC---CCCc------EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecc
Q 006424          342 YFISGSIDGKVRIWGV---CEKR------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  412 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~---~~~~------~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  412 (645)
                      .|++|+.+|.|.-=+.   +...      ......|.+.|+++.++|-+..++..+.|.++++|.......+....... 
T Consensus       362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~-  440 (555)
T KOG1587|consen  362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS-  440 (555)
T ss_pred             eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc-
Confidence            9999999999887333   2222      22456788999999999987766666669999999987444333222211 


Q ss_pred             ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          413 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       413 ~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                           ...+++++|||..+..++++..||.+.+||+...  ........+....+.+.|+++|+.|++|...|.+++|++
T Consensus       441 -----~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  441 -----PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             -----cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence                 3569999999998889999999999999997621  112222223556677888999999999999999999999


Q ss_pred             CCC
Q 006424          491 DEL  493 (645)
Q Consensus       491 ~~~  493 (645)
                      ...
T Consensus       516 ~~~  518 (555)
T KOG1587|consen  516 SES  518 (555)
T ss_pred             Cch
Confidence            754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.5e-15  Score=158.78  Aligned_cols=340  Identities=16%  Similarity=0.233  Sum_probs=231.3

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .|+-.++|.++||+++++|+|..||.|.+|.--...                                         -+.
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-----------------------------------------~~~  241 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-----------------------------------------DDS  241 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccc-----------------------------------------ccc
Confidence            477779999999999999999999999999633200                                         012


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  356 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd  356 (645)
                      ...+.++=|..+|.+++|+++| +|+||+..|.+.+|.+++++....-+-.++|..+.++| ++++.+....|..|.+..
T Consensus       242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~  320 (792)
T KOG1963|consen  242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIK  320 (792)
T ss_pred             ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEe
Confidence            3356677799999999999998 99999999999999999998444446888999999999 999999889999999998


Q ss_pred             CCCCcEEEe------------eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc-----cCCC
Q 006424          357 VCEKRVVDW------------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-----TSGN  419 (645)
Q Consensus       357 ~~~~~~~~~------------~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~  419 (645)
                      ..+......            ....+-.+.++++|.-+.++..+..|.|.+||+-+.....+ +.......     .+.-
T Consensus       321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~-~~v~~~n~~~~~~n~~v  399 (792)
T KOG1963|consen  321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYK-LQVCDENYSDGDVNIQV  399 (792)
T ss_pred             ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeee-EEEEeecccCCcceeEE
Confidence            765443321            11244567889999888888899999999999987766533 22111111     1234


Q ss_pred             CeEEEEEcCCCCcEEEEEEC--------C--CeEEEEECCcceeeEe-----ecCCCCCeEEEEEec-CC-CEEEEEeCC
Q 006424          420 KITGIQFSRDESQRIMITSE--------D--SKLRILDGVDVIHKFK-----GLPKSGSQMSASFTT-TG-KHIISIGDD  482 (645)
Q Consensus       420 ~i~~i~~s~~g~~~l~~~s~--------d--g~I~iwd~~~~~~~~~-----~~~~~~~i~~v~~sp-~~-~~l~t~s~d  482 (645)
                      .++.+..+..| .+++|.-.        |  -.+++|......+.+.     ...|...+...++.+ .. ...++++.|
T Consensus       400 ~itav~~~~~g-s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d  478 (792)
T KOG1963|consen  400 GITAVARSRFG-SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD  478 (792)
T ss_pred             eeeeehhhccc-eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccC
Confidence            57778888886 78887632        3  3578897543322222     244666665555544 33 379999999


Q ss_pred             ccEEEEeCCCCCcCCCcccCCcceeeeee--cCCcEEEEecCCCCccccccCCCCccccCcccccccc-CCcc--CCCCc
Q 006424          483 CRVYVWNYDELCFPSSKQKNSVRSCEHFF--SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET-APWI--RDSER  557 (645)
Q Consensus       483 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~-~~~~--~~~~~  557 (645)
                      |.++||-+.+.+.......  ...|...+  +..++.+.+|+.||..|+...++.    +.+|+.... ....  ....-
T Consensus       479 g~~KiW~~~~~~n~~k~~s--~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~----Itiwd~~~~~~l~~~~~~~~~  552 (792)
T KOG1963|consen  479 GDFKIWVFTDDSNIYKKSS--NWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDT----ITIWDYDTKNELLCTEGSRNW  552 (792)
T ss_pred             CeEEEEEEecccccCcCcc--ceEEeeeeccccCcccchhhcCCCcEEEEecCCE----EEEecCCChhhhhcccccccc
Confidence            9999999966543333322  23333222  567788999999999988766653    456777552 1111  11112


Q ss_pred             cccCccccCCCC---CCcCCCCCCCcCCCCCCccC
Q 006424          558 FSLGSWFSNDGP---CRGSATWPAEKLPLWDVTID  589 (645)
Q Consensus       558 ~~~~~~fs~dg~---~l~s~s~~d~~i~iWd~~~~  589 (645)
                      ...++.|.....   .+..++  .+++-+|++-+.
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~--~~~l~~WNll~~  585 (792)
T KOG1963|consen  553 PIAELLFTAQTQNDGALVHAT--QQRLSVWNLLSM  585 (792)
T ss_pred             chHhHhhhcccccccceeecc--CceEehHhhhhh
Confidence            233333433222   222333  458889998766

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=4.3e-17  Score=160.82  Aligned_cols=243  Identities=18%  Similarity=0.314  Sum_probs=168.8

Q ss_pred             cccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424          186 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  265 (645)
Q Consensus       186 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (645)
                      +..++.+.++|.||+|.|+|+.|+.+|.+|++||.|-.+.|||.-.                                  
T Consensus        36 ~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~----------------------------------   81 (758)
T KOG1310|consen   36 WLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE----------------------------------   81 (758)
T ss_pred             HHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchh----------------------------------
Confidence            4556667788999999999999999999999999999999999864                                  


Q ss_pred             eecCCCceeccCCCceee-ccCccCeEEEEEcCC---CeEEEEeCCCcEEEEecCCC----------eEEEEec-CCCcE
Q 006424          266 VVIPDEVFQIEESPLQEL-HGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCN----------QCLNVFD-HHNYV  330 (645)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~---~~l~s~s~dg~I~iwd~~~~----------~~~~~~~-~~~~v  330 (645)
                                 .++++.+ .||...|.++.|-|.   ..+++|+.|..|+++|+...          .....+. |...|
T Consensus        82 -----------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rV  150 (758)
T KOG1310|consen   82 -----------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRV  150 (758)
T ss_pred             -----------cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhh
Confidence                       3445544 489999999999874   38999999999999999742          1222233 88889


Q ss_pred             EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-----------eeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEe
Q 006424          331 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-----------WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKA  398 (645)
Q Consensus       331 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-----------~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~  398 (645)
                      ..++..|...+.+.+++.||+|+-||++......           +...--...++.++|. ..+|++|+.|-..++||.
T Consensus       151 Kria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  151 KRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             hheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            9999999555999999999999999998743211           1222234678899995 458999999999999996


Q ss_pred             cCCceeeeEEeeccccccCCCCeEEEE-EcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEE
Q 006424          399 SGNDLKLEKVDFHDRKKTSGNKITGIQ-FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII  477 (645)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~i~~i~-~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~  477 (645)
                      +........-.....  .......|+. |+|.+   +  ...+|.+..              ....++-+.|+|+|.-|+
T Consensus       231 Rr~lks~~s~~~~~~--~pp~~~~cv~yf~p~h---l--kn~~gn~~~--------------~~~~~t~vtfnpNGtElL  289 (758)
T KOG1310|consen  231 RRVLKSFRSDGTMNT--CPPKDCRCVRYFSPGH---L--KNSQGNLDR--------------YITCCTYVTFNPNGTELL  289 (758)
T ss_pred             hhhccCCCCCccccC--CCCcccchhheecCcc---c--cCccccccc--------------ceeeeEEEEECCCCcEEE
Confidence            533222110000000  0011222332 34432   1  111111100              111356788999998777


Q ss_pred             EEeCCccEEEEeCCCCC
Q 006424          478 SIGDDCRVYVWNYDELC  494 (645)
Q Consensus       478 t~s~dg~I~iwd~~~~~  494 (645)
                      ..-..-.|+++|+..++
T Consensus       290 vs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  290 VSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             EeeCCeEEEEEeecCCC
Confidence            66666789999998765

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=5.4e-17  Score=146.47  Aligned_cols=296  Identities=14%  Similarity=0.135  Sum_probs=197.7

Q ss_pred             CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      ..+...+++|.+.|+++.|..+++|++|...|.|++|++.+.+.+..++  +...|+.+.--| + ..+.+-+.|+.+.+
T Consensus         4 PdP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLIL   81 (323)
T ss_pred             CCCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEE
Confidence            3456677899999999999988899999999999999999988887776  667899999888 4 67888899999999


Q ss_pred             EeCCCCcEEEeeccCCCeEEEEEcc-----CCC----EEEEEecCC-eEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424          355 WGVCEKRVVDWADVRDVISAICYIP-----DGK----GFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       355 wd~~~~~~~~~~~~~~~v~~l~~sp-----~g~----~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                      |++..+..+....  -.++++.|.+     .++    .++.-++.. .+++-|.....   .............+.+.|.
T Consensus        82 w~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t---qv~i~dd~~~~Klgsvmc~  156 (323)
T KOG0322|consen   82 WTIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT---QVQIADDSERSKLGSVMCQ  156 (323)
T ss_pred             EEccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhccCccc---eeEccCchhccccCceeee
Confidence            9998866554322  3344444433     221    111111100 01112211111   1111112222334667777


Q ss_pred             EEcCC-CC-cEEEEEECCCeEEEEECCcce----------eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          425 QFSRD-ES-QRIMITSEDSKLRILDGVDVI----------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       425 ~~s~~-g~-~~l~~~s~dg~I~iwd~~~~~----------~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      .+... ++ -++++|.++|.|.+||+....          .......|..+|.++.+.+.-..=++|+.+..+..|+++.
T Consensus       157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~  236 (323)
T KOG0322|consen  157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH  236 (323)
T ss_pred             eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence            65432 22 356677889999999987542          2223345788999999987766667788888888888865


Q ss_pred             CCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCc
Q 006424          493 LCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRG  572 (645)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~  572 (645)
                      .....+....             . .                                   -...-+.++..-||++.++
T Consensus       237 s~gslq~~~e-------------~-~-----------------------------------lknpGv~gvrIRpD~KIlA  267 (323)
T KOG0322|consen  237 STGSLQIRKE-------------I-T-----------------------------------LKNPGVSGVRIRPDGKILA  267 (323)
T ss_pred             ccCcccccce-------------E-E-----------------------------------ecCCCccceEEccCCcEEe
Confidence            4111111000             0 0                                   0011133445668999999


Q ss_pred             CCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424          573 SATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       573 s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                      +|.| |++|||+.-.+.         .|......|...+..++|++ |..++++||.|++|-+|+.|
T Consensus       268 TAGW-D~RiRVyswrtl---------~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkLY  323 (323)
T KOG0322|consen  268 TAGW-DHRIRVYSWRTL---------NPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKLY  323 (323)
T ss_pred             eccc-CCcEEEEEeccC---------CchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeecC
Confidence            9999 999999998887         24556667777777788888 57899999999999999987

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.72  E-value=1.7e-14  Score=152.22  Aligned_cols=320  Identities=24%  Similarity=0.392  Sum_probs=224.4

Q ss_pred             CcEEEEEE-CCCCC-EEEEEeC-CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          201 GCIWTLKF-SPDGR-YLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       201 ~~V~~l~f-spdg~-~L~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      ..+..+.+ ++++. +++..+. |+.+.+|+...                                            ..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--------------------------------------------~~  145 (466)
T COG2319         110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST--------------------------------------------PG  145 (466)
T ss_pred             CceeeEEEECCCcceEEeccCCCCccEEEEEecC--------------------------------------------CC
Confidence            36777777 88887 5555455 99999999875                                            02


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeC-CCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCC-EEEEEeCCCcEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDN-YFISGSIDGKVR  353 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~-dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~-~l~s~s~dg~i~  353 (645)
                      .....+.+|...|..++|+|++ .+++++. |+.+++|++..+..+..+. |...|.+++|+| ++. .+++++.|+.|+
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~  224 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIR  224 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC-CcceEEEEecCCCcEE
Confidence            3456778899999999999998 7778875 9999999999877777775 789999999998 776 556658999999


Q ss_pred             EEeCCCCcEEE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424          354 IWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       354 vwd~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                      +||...+....  +..|.... ...|+|++..+++++.|+.+++|+...........      ..|...+.++.|.|++ 
T Consensus       225 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~-  296 (466)
T COG2319         225 LWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL------SGHSSSVLSVAFSPDG-  296 (466)
T ss_pred             EEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE------ecCCccEEEEEECCCC-
Confidence            99988776665  56666664 33899999899999999999999998766522222      2235789999999976 


Q ss_pred             cEEEEEECCCeEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEE-eCCccEEEEeCCCCCcCCCcccCCcceee
Q 006424          432 QRIMITSEDSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFPSSKQKNSVRSCE  508 (645)
Q Consensus       432 ~~l~~~s~dg~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  508 (645)
                      ..+++++.|+.+.+||..........  ..|...+..+.|.+++..++.+ ..|+.+.+|++.... ...          
T Consensus       297 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~----------  365 (466)
T COG2319         297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLK----------  365 (466)
T ss_pred             CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeE----------
Confidence            56666888899999987744333322  2466678999994333566665 678999999998773 000          


Q ss_pred             eeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCC--ccccCccccCCCCCCcCCCCCCCcCCCCCC
Q 006424          509 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSE--RFSLGSWFSNDGPCRGSATWPAEKLPLWDV  586 (645)
Q Consensus       509 ~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~  586 (645)
                      .......+..+.+.+ ......  .......+.+|+............  ..+....+++++..++++.. ++.+++|+.
T Consensus       366 ~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  441 (466)
T COG2319         366 TLEGHSNVLSVSFSP-DGRVVS--SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS-DNTIRLWDL  441 (466)
T ss_pred             EecCCceEEEEEECC-CCCEEE--EecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecC-CCcEEEEec
Confidence            011111145666666 422222  111223344455433333222222  56777888999998877555 788999987


Q ss_pred             cc
Q 006424          587 TI  588 (645)
Q Consensus       587 ~~  588 (645)
                      .+
T Consensus       442 ~~  443 (466)
T COG2319         442 KT  443 (466)
T ss_pred             cC
Confidence            76

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.71  E-value=1.8e-15  Score=140.45  Aligned_cols=275  Identities=15%  Similarity=0.177  Sum_probs=191.5

Q ss_pred             eEEEEEcCCC-eEEEEeCCCcEEEEecCCC--------------eEEEEecCCCcEEEEEEe-------eCCCCEEEEEe
Q 006424          290 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--------------QCLNVFDHHNYVTCVQFN-------PIDDNYFISGS  347 (645)
Q Consensus       290 V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~--------------~~~~~~~~~~~v~~l~~~-------p~~~~~l~s~s  347 (645)
                      ...+.|+||| .|++-+.|..+.+|++...              .....+.....|...+|-       | +.+++++.+
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~ss  130 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVSS  130 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeecc
Confidence            4457899998 8999999999999987321              111222355678888876       5 678999999


Q ss_pred             CCCcEEEEeCCCCcEEEe---eccCC---CeEEEEEccCCCEEEEEecCCeEEEEEec-CCce-eeeEEeeccccccCCC
Q 006424          348 IDGKVRIWGVCEKRVVDW---ADVRD---VISAICYIPDGKGFIVGSITGTCHFYKAS-GNDL-KLEKVDFHDRKKTSGN  419 (645)
Q Consensus       348 ~dg~i~vwd~~~~~~~~~---~~~~~---~v~~l~~sp~g~~l~~g~~dg~i~iwd~~-~~~~-~~~~~~~~~~~~~~~~  419 (645)
                      .+.-|++||.-+++....   ..|.+   ...+++|+|||.+|++|. ...|++||+. .+.. +......++ +....+
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~-k~gq~g  208 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKG-KFGQKG  208 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcc-cccccc
Confidence            999999999999887652   23333   456899999999998875 6799999993 3221 111111111 222346


Q ss_pred             CeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC-CccEEEEeCCCCCcCCC
Q 006424          420 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSS  498 (645)
Q Consensus       420 ~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~~~~~  498 (645)
                      -+.+++|+|..+..++.++....+-||.-......+....|.+.|+.+.|.++|+.|++|.. |-.|..||++....+..
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~  288 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY  288 (406)
T ss_pred             eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence            78999999988779999999988888764433333334459999999999999999999984 78999999987643222


Q ss_pred             cccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccc---cCCccCCCCccccCccccCCCCCCcCCC
Q 006424          499 KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE---TAPWIRDSERFSLGSWFSNDGPCRGSAT  575 (645)
Q Consensus       499 ~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~~~~~fs~dg~~l~s~s  575 (645)
                      .-...+      .....-+-....|++..|++.+.++   .+.+|+...   .......+...+.++++.|-...+++++
T Consensus       289 ~L~rhv------~~TNQRI~FDld~~~~~LasG~tdG---~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  289 ALERHV------GDTNQRILFDLDPKGEILASGDTDG---SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             hhhhhc------cCccceEEEecCCCCceeeccCCCc---cEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence            211111      0112223444568888888765554   466787744   2334555667789999999988888877


Q ss_pred             C
Q 006424          576 W  576 (645)
Q Consensus       576 ~  576 (645)
                      .
T Consensus       360 G  360 (406)
T KOG2919|consen  360 G  360 (406)
T ss_pred             C
Confidence            5

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=2.3e-15  Score=159.41  Aligned_cols=285  Identities=15%  Similarity=0.154  Sum_probs=187.7

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      +.+..+.-..+.|+|-...++++...-.|+|||.+.+...                                        
T Consensus      1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l---------------------------------------- 1099 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL---------------------------------------- 1099 (1387)
T ss_pred             HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCcee----------------------------------------
Confidence            3444456677889998889999987788999999874432                                        


Q ss_pred             cCCCceeec---cCccCeEEEEEcCC---CeEEEEeCCCcEEEEecC-----CCeEEEEec--------CCCcEEEEEEe
Q 006424          276 EESPLQELH---GHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVG-----CNQCLNVFD--------HHNYVTCVQFN  336 (645)
Q Consensus       276 ~~~~~~~l~---~h~~~V~~l~~s~~---~~l~s~s~dg~I~iwd~~-----~~~~~~~~~--------~~~~v~~l~~~  336 (645)
                           ..|.   .....|+.+.+-++   ..+++|+.||.|+||+--     ..+.+....        ..+.-.-+.|.
T Consensus      1100 -----~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq 1174 (1387)
T KOG1517|consen 1100 -----NGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ 1174 (1387)
T ss_pred             -----ccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehh
Confidence                 2222   13456888888653   289999999999999642     223332221        11111345777


Q ss_pred             eCCCCEEEEEeCCCcEEEEeCCCCcEEEe--eccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424          337 PIDDNYFISGSIDGKVRIWGVCEKRVVDW--ADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  413 (645)
Q Consensus       337 p~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  413 (645)
                      . ...+|++++.-..|+|||.....++.-  .+....++++.-+- .|+.+++|..||.+++||.+............  
T Consensus      1175 Q-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-- 1251 (1387)
T KOG1517|consen 1175 Q-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-- 1251 (1387)
T ss_pred             h-hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec--
Confidence            7 444555556578999999988777663  33455677766443 57999999999999999998665432211111  


Q ss_pred             cccCCCC--eEEEEEcCCCCcEEEEEECCCeEEEEECCc-ceeeEe-ecCCC--C-CeEEEEEecCCCEEEEEeCCccEE
Q 006424          414 KKTSGNK--ITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFK-GLPKS--G-SQMSASFTTTGKHIISIGDDCRVY  486 (645)
Q Consensus       414 ~~~~~~~--i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~-~~~~~--~-~i~~v~~sp~~~~l~t~s~dg~I~  486 (645)
                        .|...  |..+.+.+.|-..|++|+.||.|++||++. ....+. ...|.  + ..+++..+++...+|+|+. +.|+
T Consensus      1252 --~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1252 --EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred             --ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEE
Confidence              22333  999999998766799999999999999885 222222 21122  3 5899999999999999998 9999


Q ss_pred             EEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCC
Q 006424          487 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS  535 (645)
Q Consensus       487 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~  535 (645)
                      ||++...+........   .. .-...|....++|+|-...|+....|.
T Consensus      1329 Iy~~~G~~l~~~k~n~---~F-~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1329 IYSLSGEQLNIIKYNP---GF-MGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred             EEecChhhhcccccCc---cc-ccCcCCCcceeeecchhHhhhhccCCc
Confidence            9999876533222111   00 001233445566666666666554443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.5e-15  Score=135.49  Aligned_cols=246  Identities=14%  Similarity=0.221  Sum_probs=175.1

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      ..|.+-+++|.+++|+.|+.+|.|.+..+.+.......                                   .....++
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~-----------------------------------~~gk~~i   55 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE-----------------------------------PPGKLKI   55 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC-----------------------------------CCCCcce
Confidence            34667789999999999999999999998763221110                                   0013445


Q ss_pred             eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeE----EEEe-----c-----CCCcEEEEEEeeCCCCEEEEE
Q 006424          281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC----LNVF-----D-----HHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~----~~~~-----~-----~~~~v~~l~~~p~~~~~l~s~  346 (645)
                      ...++|.++|+.++|+ +.+|++|+. |.|+-|..+....    ....     .     .-..|+++...| ..+-++.+
T Consensus        56 v~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~A  132 (325)
T KOG0649|consen   56 VPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFA  132 (325)
T ss_pred             eeccccCCCeeeeeee-hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEe
Confidence            5668999999999998 456777765 9999997643221    1111     0     123688999999 66666666


Q ss_pred             eCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc--ccc-CCCCeE
Q 006424          347 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR--KKT-SGNKIT  422 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~-~~~~i~  422 (645)
                      +.|+.++.||++++++.. +.+|.+.+.++.--.....+++|++||++++||.++.+...........  .+. .+..|.
T Consensus       133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig  212 (325)
T KOG0649|consen  133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG  212 (325)
T ss_pred             cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE
Confidence            689999999999999876 7899999999998666668999999999999999988764432222111  111 245567


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +++.+.+   ++++|+ ...+.+|+++  +....+..   ..++..+.|.  .+.+++++..+.|.-|.+..-
T Consensus       213 ala~~ed---WlvCGg-Gp~lslwhLrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  213 ALAVNED---WLVCGG-GPKLSLWHLRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             EEeccCc---eEEecC-CCceeEEeccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeeccE
Confidence            7776554   555554 5679999988  44555554   4567778884  557888888889999988643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.70  E-value=2.8e-15  Score=156.90  Aligned_cols=272  Identities=15%  Similarity=0.230  Sum_probs=192.5

Q ss_pred             CcEEEEecCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE-------EEeeccCCCeEEEEEcc
Q 006424          308 KTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-------VDWADVRDVISAICYIP  379 (645)
Q Consensus       308 g~I~iwd~~~~-~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~-------~~~~~~~~~v~~l~~sp  379 (645)
                      +.+.+|+++.. .+...+.....|+|++|+|.+.++++.|..+|.|.+||++.+..       .....|..++..+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            37999999766 66667778899999999999999999999999999999987554       22456888999999977


Q ss_pred             CCC--EEEEEecCCeEEEEEecCCceeeeEEeecccc-----ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--
Q 006424          380 DGK--GFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-----KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--  450 (645)
Q Consensus       380 ~g~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--  450 (645)
                      +..  -+++++.||.|..|+++.-..+..........     ......++++.|.+.....+++|+.+|.|.--+...  
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            544  49999999999999988766544422222111     122457899999998889999999999998854221  


Q ss_pred             -ce-eeE----eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCC
Q 006424          451 -VI-HKF----KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI  524 (645)
Q Consensus       451 -~~-~~~----~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~  524 (645)
                       .. ..+    ....|.++|..+.++|=+..++..+.|.+++||.......+....         ......+++++|||.
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~---------~~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL---------DSSPDYVTDVAWSPT  452 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh---------hhccceeeeeEEcCc
Confidence             11 111    223478899999999988766666669999999977332222111         112233788999999


Q ss_pred             CccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhh
Q 006424          525 GTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQ  604 (645)
Q Consensus       525 ~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~  604 (645)
                      ...++.+.++                                           +|.|.+||+.........       .+
T Consensus       453 rpavF~~~d~-------------------------------------------~G~l~iWDLl~~~~~Pv~-------s~  482 (555)
T KOG1587|consen  453 RPAVFATVDG-------------------------------------------DGNLDIWDLLQDDEEPVL-------SQ  482 (555)
T ss_pred             CceEEEEEcC-------------------------------------------CCceehhhhhccccCCcc-------cc
Confidence            8877644432                                           788999998766322222       11


Q ss_pred             hhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424          605 QCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       605 ~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                      ... .......+.+..|+.|+.|+.-|+|.+|++-
T Consensus       483 ~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  483 KVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             ccc-ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            111 1111222334359999999999999999873

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.69  E-value=2.1e-15  Score=138.07  Aligned_cols=240  Identities=14%  Similarity=0.208  Sum_probs=173.1

Q ss_pred             cccCcEEEEEECCCCC-----EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          198 AHKGCIWTLKFSPDGR-----YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~-----~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      .|.-+++.+.|.|+..     +|||.+.  .+|+|.+...+......                               .+
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~-------------------------------~~  140 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQ-------------------------------SV  140 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehh-------------------------------hh
Confidence            5888999999999863     6666554  59999987421100000                               00


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeE----EEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC----LNVFDHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~----~~~~~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                           -....-..+..++++..|+.-  +++.++|-|.+..|||++++..    .+.+.|...|..++|.....+.|++.
T Consensus       141 -----L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv  215 (364)
T KOG0290|consen  141 -----LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASV  215 (364)
T ss_pred             -----hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEe
Confidence                 000111235678999999853  4899999999999999998733    34457999999999998556789999


Q ss_pred             eCCCcEEEEeCCCCcEEE---eecc-CCCeEEEEEccC-CCEEEEEecC-CeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          347 SIDGKVRIWGVCEKRVVD---WADV-RDVISAICYIPD-GKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~---~~~~-~~~v~~l~~sp~-g~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      +.||.||+||++..+--+   -... ..+...++|++. -+++|+-..| ..|.+.|++....+...+.      .|.+.
T Consensus       216 gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~------~H~a~  289 (364)
T KOG0290|consen  216 GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR------NHQAS  289 (364)
T ss_pred             cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh------cCccc
Confidence            999999999999755322   2222 567888999884 4677775544 5799999998776654333      34689


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECCccee-----eEeecCCCCCeEEEEEec-CCCEEEEEeC
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----KFKGLPKSGSQMSASFTT-TGKHIISIGD  481 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-----~~~~~~~~~~i~~v~~sp-~~~~l~t~s~  481 (645)
                      |+.++|.|..+..+++++.|..+-+||+.+...     ........+.|+.+.|++ ....++.+..
T Consensus       290 VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  290 VNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             ccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence            999999998889999999999999999874333     111223567899999996 4667777653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.69  E-value=1.1e-14  Score=148.93  Aligned_cols=283  Identities=12%  Similarity=0.156  Sum_probs=172.8

Q ss_pred             EEEEeCCCcEEEEecCC-Ce--EEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEeCCC-CcEE--EeeccCCCeE
Q 006424          301 LLSCSMDKTVRMWQVGC-NQ--CLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCE-KRVV--DWADVRDVIS  373 (645)
Q Consensus       301 l~s~s~dg~I~iwd~~~-~~--~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~-~~~~--~~~~~~~~v~  373 (645)
                      +++...++.|.+||+.+ ++  .+..+.+.+....++++| ++++|++++ .++.|.+|++.. +.+.  ..........
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            44557789999999964 33  455565666788899999 888887664 578899999873 4432  2223344678


Q ss_pred             EEEEccCCCEEEEEec-CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce
Q 006424          374 AICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI  452 (645)
Q Consensus       374 ~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~  452 (645)
                      .+.|+|+++++++++. ++.|.+|++..............    ......+++++|+|...+++...++.|.+||+....
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~----~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE----GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc----CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence            8999999998888764 88999999974332211111110    113456788999984444566677999999986421


Q ss_pred             e-------eEeecCCCCCeEEEEEecCCCEEEEEeC-CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCC
Q 006424          453 H-------KFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI  524 (645)
Q Consensus       453 ~-------~~~~~~~~~~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~  524 (645)
                      .       ..... .......+.|+|+|++++++.. ++.|.+|+++......        ..        +..+...|.
T Consensus       160 ~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~--------~~--------~~~~~~~p~  222 (330)
T PRK11028        160 HLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI--------EC--------VQTLDMMPA  222 (330)
T ss_pred             cccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE--------EE--------EEEEecCCC
Confidence            1       11111 2334678999999999988876 8999999997431000        00        000000010


Q ss_pred             CccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhh
Q 006424          525 GTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQ  604 (645)
Q Consensus       525 ~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~  604 (645)
                      .                           ....++..++.|+|||+++.++...++.|.+|++...... ..     ....
T Consensus       223 ~---------------------------~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~-----~~~~  269 (330)
T PRK11028        223 D---------------------------FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LS-----FEGH  269 (330)
T ss_pred             c---------------------------CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EE-----EeEE
Confidence            0                           0011223356688888877766555678999988543100 00     0000


Q ss_pred             hhccCCCCCccCCCCcceEEEEec-CCCeEeEEEec
Q 006424          605 QCLNNVDDVRAISATWGLVIVTAG-CDGMIKTFHNY  639 (645)
Q Consensus       605 ~~~~~~~~~~~~~~~d~~~ivt~s-~Dg~Iriw~~~  639 (645)
                      ...........+++ ||++|+++. .+++|.+|++.
T Consensus       270 ~~~~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        270 QPTETQPRGFNIDH-SGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EeccccCCceEECC-CCCEEEEEEccCCcEEEEEEc
Confidence            00111222345555 677666555 59999999874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.69  E-value=3.2e-14  Score=145.39  Aligned_cols=249  Identities=13%  Similarity=0.204  Sum_probs=160.7

Q ss_pred             ccCcEEEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          199 HKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      +.+....++++|++++|++++ .++.|.+|++......                                          
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l------------------------------------------   70 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL------------------------------------------   70 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce------------------------------------------
Confidence            345677899999999887664 5788999998631000                                          


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEe-CCCcEEEEecCC-C---eEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCC
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGC-N---QCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDG  350 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s-~dg~I~iwd~~~-~---~~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~dg  350 (645)
                      ....... ..+....++++|++ ++++++ .++.|.+|++++ +   +.+..+.+.....+++++| +++++++++ .++
T Consensus        71 ~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~~  148 (330)
T PRK11028         71 TFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKED  148 (330)
T ss_pred             EEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCCC
Confidence            0011111 22345679999987 566655 488999999964 2   2233333444577889999 888775554 568


Q ss_pred             cEEEEeCCCC-cEEE------eeccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCC--ceee-eEEeeccccccCCC
Q 006424          351 KVRIWGVCEK-RVVD------WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGN--DLKL-EKVDFHDRKKTSGN  419 (645)
Q Consensus       351 ~i~vwd~~~~-~~~~------~~~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~--~~~~-~~~~~~~~~~~~~~  419 (645)
                      .|.+||+.+. .+..      ..........+.|+|+|++++++.. ++.|.+|++...  .... ..+...........
T Consensus       149 ~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~  228 (330)
T PRK11028        149 RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR  228 (330)
T ss_pred             EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc
Confidence            9999999763 2211      1122445678999999999988876 899999999742  2211 11111111001112


Q ss_pred             CeEEEEEcCCCCcEEEEEE-CCCeEEEEECCcce--eeEeec-CCCCCeEEEEEecCCCEEEEEeC-CccEEEEeCCC
Q 006424          420 KITGIQFSRDESQRIMITS-EDSKLRILDGVDVI--HKFKGL-PKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDE  492 (645)
Q Consensus       420 ~i~~i~~s~~g~~~l~~~s-~dg~I~iwd~~~~~--~~~~~~-~~~~~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~  492 (645)
                      ....+.++|+| ++++++. .++.|.+|++....  ..+... .-......+.++|+|++|+++.. +++|.+|+++.
T Consensus       229 ~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        229 WAADIHITPDG-RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             cceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            33468899998 6676665 47899999975321  112221 11224567899999999998775 89999998863

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.69  E-value=1.9e-15  Score=148.98  Aligned_cols=261  Identities=14%  Similarity=0.282  Sum_probs=175.6

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEe-----cCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF-----TDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      .|...|.|+.|+.+...+.+++++..+..||+.+........     .++.++....     .-.........+...++-
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs-----~~~g~~~d~~~i~s~DGk   86 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRS-----SGGGKGSDTLLICSNDGR   86 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccc-----cCCCCCcceEEEEcCCce
Confidence            366677899999888777777666666666665433221111     1111110000     000000011111111111


Q ss_pred             e---eccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe
Q 006424          273 F---QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  347 (645)
Q Consensus       273 ~---~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s  347 (645)
                      +   +-.++.......|.+.|.+-.|+|+| -|++++.||.|++|.-. |-.-.++ +...+|+|++|.|+..+.+++.+
T Consensus        87 f~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g  165 (737)
T KOG1524|consen   87 FVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQG  165 (737)
T ss_pred             EEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence            1   11245556778899999999999998 79999999999999853 3332233 46778999999995555565544


Q ss_pred             CCCcEEEEeCCC-CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424          348 IDGKVRIWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       348 ~dg~i~vwd~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                        +.+.+=-+.. .+++++..|.+-|.++.|++..+.+++|++|-..++||..+...-.        ...|..+|++++|
T Consensus       166 --~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~--------S~~~ey~ITSva~  235 (737)
T KOG1524|consen  166 --GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT--------SAAEEYAITSVAF  235 (737)
T ss_pred             --CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc--------CChhccceeeeee
Confidence              5666666553 5678899999999999999999999999999999999987655421        2234589999999


Q ss_pred             cCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEE
Q 006424          427 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW  488 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iw  488 (645)
                      .|+  ..++.++.. +++          +. ....+.|..++||+||..++.|+..|.+.+=
T Consensus       236 npd--~~~~v~S~n-t~R----------~~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  236 NPE--KDYLLWSYN-TAR----------FS-SPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ccc--cceeeeeee-eee----------ec-CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            999  466666542 222          22 2367899999999999999999988877653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.4e-15  Score=146.55  Aligned_cols=192  Identities=26%  Similarity=0.380  Sum_probs=148.2

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceee
Q 006424          204 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  283 (645)
Q Consensus       204 ~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  283 (645)
                      .+++|+++|..|++|+.||++|||++.+                                             ...+...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps---------------------------------------------~~t~l~e  182 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPS---------------------------------------------MLTILEE  182 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCc---------------------------------------------chhhhhh
Confidence            7899999999999999999999999765                                             3344556


Q ss_pred             ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCC---CE--EEEEeCCCcEEE
Q 006424          284 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDD---NY--FISGSIDGKVRI  354 (645)
Q Consensus       284 ~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~---~~--l~s~s~dg~i~v  354 (645)
                      ..|...|.++.|+||+ .|++.+.| ..+||+.+++.++....   .......+.|+. ++   .+  ++....-+.|+.
T Consensus       183 ~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~  260 (398)
T KOG0771|consen  183 IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRL  260 (398)
T ss_pred             HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeE
Confidence            6799999999999999 89999999 99999999997766553   333566777876 55   22  333334566777


Q ss_pred             EeCCC--C----cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          355 WGVCE--K----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       355 wd~~~--~----~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      ||+..  +    +..+.......|++++.+++|++++.|+.||.|.+++....+....      .+..|...|+.+.|+|
T Consensus       261 ~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~------vk~aH~~~VT~ltF~P  334 (398)
T KOG0771|consen  261 CDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY------VKEAHLGFVTGLTFSP  334 (398)
T ss_pred             EEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe------ehhhheeeeeeEEEcC
Confidence            77642  1    2222333456799999999999999999999999999986654322      2344568999999999


Q ss_pred             CCCcEEEEEECCCeEEEEECC
Q 006424          429 DESQRIMITSEDSKLRILDGV  449 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~  449 (645)
                      +. +++++.+.|.+..+..+.
T Consensus       335 ds-r~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  335 DS-RYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             Cc-CcccccccCCceeEEEEe
Confidence            95 889999999888887644

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.66  E-value=1.3e-14  Score=134.79  Aligned_cols=244  Identities=19%  Similarity=0.323  Sum_probs=182.0

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      +.--..+|+|.+|++|+..+|.+.....|.||...+.+.                                         
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----------------------------------------   44 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----------------------------------------   44 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------------------------------------
Confidence            333457899999999999999999999999998876321                                         


Q ss_pred             cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEec-CCCeE---EEEecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV-GCNQC---LNVFDHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~-~~~~~---~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                       .++.+++..|...|++++|+|.. .|++|+.|..-++|.. ..++-   +..++++...+++.|+| .++.|++|+.-.
T Consensus        45 -w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar  122 (361)
T KOG1523|consen   45 -WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGAR  122 (361)
T ss_pred             -ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCcc
Confidence             45678899999999999999975 9999999999999998 44433   33446899999999999 999999999999


Q ss_pred             cEEEEeCCCCcEE-----EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee--------EEeec---ccc
Q 006424          351 KVRIWGVCEKRVV-----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--------KVDFH---DRK  414 (645)
Q Consensus       351 ~i~vwd~~~~~~~-----~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~--------~~~~~---~~~  414 (645)
                      .|.||-++...--     .-..+++.|++++|+|++-++++|+.|+.+++|..--.....+        .+.+.   ...
T Consensus       123 ~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~  202 (361)
T KOG1523|consen  123 LISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA  202 (361)
T ss_pred             EEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence            9999988765532     2345677899999999999999999999999997531111000        11111   011


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee-eEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424          415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCR  484 (645)
Q Consensus       415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~  484 (645)
                      ...++.+..+.|+|+| ..|+-.+.|+.+.+-|.....+ ........-+..++.|-.+. .++.++.|..
T Consensus       203 ~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~c~  271 (361)
T KOG1523|consen  203 SSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYDCG  271 (361)
T ss_pred             ccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCCCCC
Confidence            1345789999999998 8999999999999999664432 11112233677777775543 4455555533

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.6e-14  Score=152.31  Aligned_cols=198  Identities=16%  Similarity=0.144  Sum_probs=138.5

Q ss_pred             ceeeccCccCeEEEEEcCCC-eEEEEeCC---CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCcEE-
Q 006424          280 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVR-  353 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~dg~i~-  353 (645)
                      .+.+..|...+.+.+|+|+| .|+.++.+   ..|++||+.+++.............++|+| +++.|+.++ .+|.+. 
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~I  274 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNI  274 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEE
Confidence            35566788889999999998 77776654   369999998876543333333445789999 998887764 577654 


Q ss_pred             -EEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424          354 -IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       354 -vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                       +||+.++....+..+...+.+..|+|||+.++.++ .+|...+|++.........+   ..    ..  .+..|+|+| 
T Consensus       275 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~----~~--~~~~~SpDG-  344 (429)
T PRK01742        275 YVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GG----RG--YSAQISADG-  344 (429)
T ss_pred             EEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cC----CC--CCccCCCCC-
Confidence             55777788777777777888999999999877655 57888999876443222221   11    12  357899998 


Q ss_pred             cEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          432 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       432 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      ..++.++.++ +.+||+.+.........  .....+.|+|||++|+.++.+|.+.+|.+.
T Consensus       345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        345 KTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             CEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            6777776655 55689764432221111  123567899999999999999988888764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.65  E-value=7.6e-14  Score=129.84  Aligned_cols=206  Identities=15%  Similarity=0.228  Sum_probs=163.3

Q ss_pred             eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe---EEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424          282 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  356 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~---~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd  356 (645)
                      .+.-...+|+|.+|++++ .++.+.....|.||.....+   ...++ .|...|++++|+| ..+.|++|+.|..-++|.
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~   83 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT   83 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence            344456799999999997 78888888999999987665   34444 3889999999999 889999999999999999


Q ss_pred             CCC-Cc---EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424          357 VCE-KR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       357 ~~~-~~---~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                      ... ++   .+.+..++...+++.|+|.++.|++|+....|.+|-++...--..   .......+...|+++.|+|++ -
T Consensus        84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV---sKhikkPirStv~sldWhpnn-V  159 (361)
T KOG1523|consen   84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV---SKHIKKPIRSTVTSLDWHPNN-V  159 (361)
T ss_pred             cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh---hhhhCCccccceeeeeccCCc-c
Confidence            844 33   445778899999999999999999999999999998875432110   011122234789999999997 8


Q ss_pred             EEEEEECCCeEEEEECC-----c---------------ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          433 RIMITSEDSKLRILDGV-----D---------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       433 ~l~~~s~dg~I~iwd~~-----~---------------~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      ++++|+.|+..+|+..-     +               ....+  ....+.+..+.|+|+|..|+-.+.|..+.+=|...
T Consensus       160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~--~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA--SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh--ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            99999999999998621     0               01111  13567899999999999999999999999999877


Q ss_pred             CC
Q 006424          493 LC  494 (645)
Q Consensus       493 ~~  494 (645)
                      +.
T Consensus       238 p~  239 (361)
T KOG1523|consen  238 PS  239 (361)
T ss_pred             Cc
Confidence            63

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=4.6e-13  Score=124.71  Aligned_cols=280  Identities=12%  Similarity=0.240  Sum_probs=185.8

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424          203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  282 (645)
Q Consensus       203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (645)
                      ..+++|+.|..-++.|.++| .+||+++.......                                           ..
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~-------------------------------------------r~   43 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS-------------------------------------------RQ   43 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhh-------------------------------------------hc
Confidence            45599999999999998888 89999875211100                                           00


Q ss_pred             eccCccCeEEEEEcCCCeEE-EEeCC------CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          283 LHGHKGDVLDLAWSNSNYLL-SCSMD------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       283 l~~h~~~V~~l~~s~~~~l~-s~s~d------g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      +..-.-.+.-+-| ..++|+ .|+.+      ..|.|||=...+++..+....+|.++.+.+   +.+++.- .+.|+||
T Consensus        44 ~~~~G~~~veMLf-R~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvvl-~~~I~Vy  118 (346)
T KOG2111|consen   44 FIDGGFKIVEMLF-RSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVVL-ENKIYVY  118 (346)
T ss_pred             cccCchhhhhHhh-hhceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEEe-cCeEEEE
Confidence            0000011111111 123332 34333      479999988888999999999999999965   4555554 6789999


Q ss_pred             eCCC-CcEEE---eeccCCCeEEEEEccCCCEEEE-EecCCeEEEEEecCCcee-eeEEeeccccccCCCCeEEEEEcCC
Q 006424          356 GVCE-KRVVD---WADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       356 d~~~-~~~~~---~~~~~~~v~~l~~sp~g~~l~~-g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      .... .+...   ....+....+++-+.+..+||. |..-|.|++-|+...... ...+.      .|.+.|.|++++.+
T Consensus       119 tF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~------AH~s~Iacv~Ln~~  192 (346)
T KOG2111|consen  119 TFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN------AHDSDIACVALNLQ  192 (346)
T ss_pred             EcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE------cccCceeEEEEcCC
Confidence            9874 33332   2222334544443334444544 456799999999866542 22232      34589999999999


Q ss_pred             CCcEEEEEECCCe-EEEEECCc--ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCC--------
Q 006424          430 ESQRIMITSEDSK-LRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS--------  498 (645)
Q Consensus       430 g~~~l~~~s~dg~-I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~--------  498 (645)
                      | .++|++|..|+ |||||..+  .+..++.-.....|.+++|||++.+||++|+.|+++|+.+........        
T Consensus       193 G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~  271 (346)
T KOG2111|consen  193 G-TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFK  271 (346)
T ss_pred             c-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccccccccc
Confidence            8 89999999986 79999774  455555555677899999999999999999999999999976432222        


Q ss_pred             -----cccCCcceeeeee-cCCcEEEEecCCCCccccccCCCCccc
Q 006424          499 -----KQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSSSLRD  538 (645)
Q Consensus       499 -----~~~~~~~~~~~~~-~~g~~~~v~~s~~~~~l~~~~~~~~~~  538 (645)
                           +...+..+...|+ +.|....++|..+...++..+.|+..+
T Consensus       272 ~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~  317 (346)
T KOG2111|consen  272 RLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYY  317 (346)
T ss_pred             ccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEE
Confidence                 1222334444555 667777888988855555556655433

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.64  E-value=4.4e-15  Score=146.41  Aligned_cols=257  Identities=16%  Similarity=0.181  Sum_probs=173.3

Q ss_pred             cCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcE-EEEEEee------CCCCEEEEEeCCCcEEEEe
Q 006424          285 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYV-TCVQFNP------IDDNYFISGSIDGKVRIWG  356 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v-~~l~~~p------~~~~~l~s~s~dg~i~vwd  356 (645)
                      .|...|.|+.|+...-++..+.|..+.+|.--+........ ....+ +.+..-+      .....|+.++.||.+.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            46677779999877666666777777776543332222221 11111 1111111      1235688899999999987


Q ss_pred             CCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          357 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       357 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      -...-......|.+.+.+-.|+|+|.-|+++++||.|++|.-.+.-....   .+     ...+|.|++|.|+....+++
T Consensus        92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl---~Q-----~~~~v~c~~W~p~S~~vl~c  163 (737)
T KOG1524|consen   92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTV---VQ-----NEESIRCARWAPNSNSIVFC  163 (737)
T ss_pred             ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHH---hh-----cCceeEEEEECCCCCceEEe
Confidence            65544455778999999999999999999999999999998765432111   11     23789999999997555555


Q ss_pred             EECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcE
Q 006424          437 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS  516 (645)
Q Consensus       437 ~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~  516 (645)
                      .+  +.+.|=.+......++-..|.+-|.++.|++..+.+++|++|-+.+|||-.......           .-.++.++
T Consensus       164 ~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~-----------S~~~ey~I  230 (737)
T KOG1524|consen  164 QG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT-----------SAAEEYAI  230 (737)
T ss_pred             cC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc-----------CChhccce
Confidence            44  455555555555566666799999999999999999999999999999976542111           11245678


Q ss_pred             EEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCC
Q 006424          517 VAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATW  576 (645)
Q Consensus       517 ~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~  576 (645)
                      +.++|+|+..++.. +....+             +....-+.+..++||+||.-++.++.
T Consensus       231 TSva~npd~~~~v~-S~nt~R-------------~~~p~~GSifnlsWS~DGTQ~a~gt~  276 (737)
T KOG1524|consen  231 TSVAFNPEKDYLLW-SYNTAR-------------FSSPRVGSIFNLSWSADGTQATCGTS  276 (737)
T ss_pred             eeeeeccccceeee-eeeeee-------------ecCCCccceEEEEEcCCCceeecccc
Confidence            89999999443331 111111             12334466788899999998877665

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.64  E-value=4.4e-14  Score=131.60  Aligned_cols=297  Identities=15%  Similarity=0.187  Sum_probs=194.3

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec
Q 006424          205 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  284 (645)
Q Consensus       205 ~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  284 (645)
                      -++|||+|+|+|+++.- .+.|-|..+.+                                             ..+.+ 
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq---------------------------------------------~~qlf-   45 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQ---------------------------------------------LHQLF-   45 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhh---------------------------------------------HHHHH-
Confidence            47899999999999876 67777776521                                             11111 


Q ss_pred             cCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCC-CEEEEEeCCCcEEEEeCCCC
Q 006424          285 GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDD-NYFISGSIDGKVRIWGVCEK  360 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~-~~l~s~s~dg~i~vwd~~~~  360 (645)
                      .--..|..+.|..+.  .|.....|+.|.+|++...+-...++ ....+..++|+| +| .+|.+...|-.|.+|.+.+.
T Consensus        46 ~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~  124 (447)
T KOG4497|consen   46 LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQ  124 (447)
T ss_pred             HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEeccc
Confidence            124567778888776  46667888999999999888877775 667899999999 77 55667777999999999998


Q ss_pred             cEEEeeccCCCeEEEEEccCCCEEEEEecCC------------------------------------eEEEEEecCCcee
Q 006424          361 RVVDWADVRDVISAICYIPDGKGFIVGSITG------------------------------------TCHFYKASGNDLK  404 (645)
Q Consensus       361 ~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg------------------------------------~i~iwd~~~~~~~  404 (645)
                      +...+...+..+..++|+|||++.+..+...                                    .+.+||.--... 
T Consensus       125 ~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-  203 (447)
T KOG4497|consen  125 KGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-  203 (447)
T ss_pred             eeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-
Confidence            8887777777788999999999988876422                                    233333221111 


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC---------------cce-----------------
Q 006424          405 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV---------------DVI-----------------  452 (645)
Q Consensus       405 ~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~---------------~~~-----------------  452 (645)
                        ...++.     +-.+..+.|+|.+ +++++|+.|+.+||.+--               .+.                 
T Consensus       204 --v~aYe~-----~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~  275 (447)
T KOG4497|consen  204 --VYAYER-----GLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHH  275 (447)
T ss_pred             --eeeeee-----ccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccc
Confidence              111111     2568889999987 899999999999885400               000                 


Q ss_pred             ------------------------------eeEe----ecCCCCCeEEEEEecCCCEEEEEeCC--ccEEEEeCCCCCcC
Q 006424          453 ------------------------------HKFK----GLPKSGSQMSASFTTTGKHIISIGDD--CRVYVWNYDELCFP  496 (645)
Q Consensus       453 ------------------------------~~~~----~~~~~~~i~~v~~sp~~~~l~t~s~d--g~I~iwd~~~~~~~  496 (645)
                                                    +.++    .......+.-++|++|..+++|-.+.  ..+.+||++..+..
T Consensus       276 cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~  355 (447)
T KOG4497|consen  276 CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH  355 (447)
T ss_pred             ccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh
Confidence                                          0000    00112345678999999999997653  68999999877532


Q ss_pred             CCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCC-ccCCCCccccCccccCCCCCCc
Q 006424          497 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGPCRG  572 (645)
Q Consensus       497 ~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~fs~dg~~l~  572 (645)
                      .....           ..++.+..|.|....|+.+.+...   ...|....... ..+..+-.+..+.+..+|..++
T Consensus       356 avLiQ-----------k~piraf~WdP~~prL~vctg~sr---LY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~  418 (447)
T KOG4497|consen  356 AVLIQ-----------KHPIRAFEWDPGRPRLVVCTGKSR---LYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIV  418 (447)
T ss_pred             hhhhh-----------ccceeEEEeCCCCceEEEEcCCce---EEEEcCCCceEEecCCCCceeeeEEecCCCcEEE
Confidence            22211           234677778888777775554322   34555533222 1122222345555666666444

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=2.2e-13  Score=129.21  Aligned_cols=236  Identities=11%  Similarity=0.188  Sum_probs=173.4

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424          200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  279 (645)
Q Consensus       200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (645)
                      ...+..+.|+.+...|..|+.|| .++|+......                                             
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k---------------------------------------------   38 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK---------------------------------------------   38 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHH---------------------------------------------
Confidence            34577888999999999999999 68887765211                                             


Q ss_pred             ceeeccCccCeEEEEEcCCCeEEEEeCC--CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424          280 LQELHGHKGDVLDLAWSNSNYLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  357 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~~l~s~s~d--g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~  357 (645)
                      ..........|.-+-|+. .+++..+.+  ..+++.+.+.+..+..+.....|.++.++   .+.|+++-.+ .|+|||+
T Consensus        39 ~~~~~~~~~~IvEmLFSS-SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN---r~RLvV~Lee-~IyIydI  113 (391)
T KOG2110|consen   39 CFSKDTEGVSIVEMLFSS-SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMN---RKRLVVCLEE-SIYIYDI  113 (391)
T ss_pred             hhcccCCCeEEEEeeccc-ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEc---cceEEEEEcc-cEEEEec
Confidence            000111122344455553 344444444  45999999999999999889999999996   4566666554 4999999


Q ss_pred             CCCcEEEe----eccCCCeEEEEEccCCCEEEEE--ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424          358 CEKRVVDW----ADVRDVISAICYIPDGKGFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       358 ~~~~~~~~----~~~~~~v~~l~~sp~g~~l~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                      ++.+++..    ..+...+.++++++.+.+++.-  ...|.|.+||..+-.. ...+..      |.+.+.+++|+++| 
T Consensus       114 ~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~-v~~I~a------H~~~lAalafs~~G-  185 (391)
T KOG2110|consen  114 KDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP-VNTINA------HKGPLAALAFSPDG-  185 (391)
T ss_pred             ccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee-eeEEEe------cCCceeEEEECCCC-
Confidence            99887763    2455567778887777788874  3468999999987654 333333      45899999999998 


Q ss_pred             cEEEEEECCCe-EEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          432 QRIMITSEDSK-LRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       432 ~~l~~~s~dg~-I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      .+||+++..|+ |||+.+.+....+..  -.....|.+++|+|++++|++.|+.++|+||.++...
T Consensus       186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            89999999986 689998755444443  2234568899999999999999999999999998654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=3.9e-14  Score=135.17  Aligned_cols=263  Identities=14%  Similarity=0.108  Sum_probs=193.6

Q ss_pred             ccCcEEEEEECCCCC--EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          199 HKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       199 H~~~V~~l~fspdg~--~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      -...|+.++|.-+++  .|...+.|..+..+.+........                                       
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~---------------------------------------   94 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS---------------------------------------   94 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc---------------------------------------
Confidence            445688888876654  555555666677666654322110                                       


Q ss_pred             CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCe----EEEEecCCCcEEEEEEeeCCCCEEEEEeCC--C
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDNYFISGSID--G  350 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~----~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d--g  350 (645)
                      ...+........+|..++.. ++.|++|-.+|.+.+|..+.+.    .+..+.....+..+.-++....++++|+..  .
T Consensus        95 ~~~~~~~~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n  173 (412)
T KOG3881|consen   95 LDDAKTVSLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENIN  173 (412)
T ss_pred             cccccccccccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhccc
Confidence            01122334456677777654 5789999999999999987543    233344456677787788677888889988  8


Q ss_pred             cEEEEeCCCCcEEEe----------eccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424          351 KVRIWGVCEKRVVDW----------ADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  418 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~----------~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  418 (645)
                      .+.+||+...+.+..          ...+-+++++.|-+.  ...|++++.-+.+++||.+....+...+.+..      
T Consensus       174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E------  247 (412)
T KOG3881|consen  174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE------  247 (412)
T ss_pred             ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc------
Confidence            899999988743321          112345778899887  78999999999999999999988888887775      


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424          419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  497 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~  497 (645)
                      .+++++...|+| +++++|..-+.+..+|++....... .....+.|.++..+|.+++++++|-|..++|+|+++.+...
T Consensus       248 ~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  248 NPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             CcceeeeecCCC-cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence            789999999998 8999999999999999986544333 33468899999999999999999999999999999865544


Q ss_pred             CcccCCcceee
Q 006424          498 SKQKNSVRSCE  508 (645)
Q Consensus       498 ~~~~~~~~~~~  508 (645)
                      ....+....++
T Consensus       327 kvYvKs~lt~i  337 (412)
T KOG3881|consen  327 KVYVKSRLTFI  337 (412)
T ss_pred             hhhhhccccEE
Confidence            44444433333

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=5.5e-14  Score=140.08  Aligned_cols=290  Identities=16%  Similarity=0.216  Sum_probs=189.9

Q ss_pred             ccccccccccccccCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424          187 FTALYTSQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  265 (645)
Q Consensus       187 ~~~~~~~~~l~~H~~~V~~l~fspdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (645)
                      +.+..+++.| +|...-+.|..+|||+|+ |||..--.|++||+.+.............      .....+..+.+ ...
T Consensus        39 ~~rieLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~------V~feiLsDD~S-K~v  110 (703)
T KOG2321|consen   39 RQRIELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEV------VDFEILSDDYS-KSV  110 (703)
T ss_pred             HHHHHHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccc------eeEEEeccchh-hhe
Confidence            3344455556 488889999999999975 56667789999999874332111110000      00011111111 111


Q ss_pred             eecCCCceeccCC--CceeeccCccCeEEEEEc-CCCeEEEEeCCCcEEEEecCCCeEEEEecC-CCcEEEEEEeeCCCC
Q 006424          266 VVIPDEVFQIEES--PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDN  341 (645)
Q Consensus       266 ~~~~~~~~~~~~~--~~~~l~~h~~~V~~l~~s-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~~p~~~~  341 (645)
                      ..-.+.......+  ....+ .-...-.+++++ ++.-|+.++....|+=.+++.|+.+..+.. ...++++..++ ...
T Consensus       111 ~L~~DR~IefHak~G~hy~~-RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hg  188 (703)
T KOG2321|consen  111 FLQNDRTIEFHAKYGRHYRT-RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHG  188 (703)
T ss_pred             EeecCceeeehhhcCeeeee-ecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccc
Confidence            1111111000000  00000 011233455665 333566666667899999999999999974 47899999999 788


Q ss_pred             EEEEEeCCCcEEEEeCCCCcEEEee-------ccCC-----CeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424          342 YFISGSIDGKVRIWGVCEKRVVDWA-------DVRD-----VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD  409 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~-----~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~  409 (645)
                      +|++|+.+|.|..||.+....+...       .+.+     .|+++.|+.+|-.+++|+.+|.+.|||+++.......- 
T Consensus       189 Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-  267 (703)
T KOG2321|consen  189 LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-  267 (703)
T ss_pred             eEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-
Confidence            9999999999999999987654422       2222     39999999999999999999999999999877543221 


Q ss_pred             eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          410 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       410 ~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                       |.    ...+|..+.|.+.+.+--+.+.....++|||-..... +........+..+|+-|++.+++++-+++.+..|=
T Consensus       268 -h~----~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~-~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yy  341 (703)
T KOG2321|consen  268 -HG----YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP-MASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYY  341 (703)
T ss_pred             -cC----CccceeeecccccCCCceEEecchHHhhhcccccCCc-eeeccccCCcCceeeecCCceEEEecCCCcceeEE
Confidence             11    2478999999887544455555667899999654433 33333566799999999999999999998888877


Q ss_pred             CCCC
Q 006424          490 YDEL  493 (645)
Q Consensus       490 ~~~~  493 (645)
                      +...
T Consensus       342 iP~L  345 (703)
T KOG2321|consen  342 IPSL  345 (703)
T ss_pred             cccc
Confidence            6553

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.62  E-value=6.3e-15  Score=147.86  Aligned_cols=207  Identities=18%  Similarity=0.294  Sum_probs=154.4

Q ss_pred             ccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          199 HKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       199 H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      ....|+.+.|.| |...||.++.||.|++|.+..+....                                      ...
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e--------------------------------------~~~  667 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE--------------------------------------NEM  667 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc--------------------------------------ccC
Confidence            345799999999 67799999999999999998643211                                      124


Q ss_pred             CCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      .+...+.+|...|+++.|+|-  +.|+++++|-+|++||+.+++....+ +|.+.|..++|+| +|+.+++.+.||+|++
T Consensus       668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rV  746 (1012)
T KOG1445|consen  668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRV  746 (1012)
T ss_pred             CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEE
Confidence            566788899999999999985  58999999999999999998876666 6999999999999 9999999999999999


Q ss_pred             EeCCCCcEEEeec---cCCCeEEEEEccCCCEEEEEecCC----eEEEEEecCCcee-eeEEeeccccccCCCCeEEEEE
Q 006424          355 WGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       355 wd~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~~g~~dg----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                      |..++++.-...+   ....--.+.|--+|+++++.+.|.    .|.+||..+-... .....+...     ..+.--.+
T Consensus       747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva-----ps~LvP~Y  821 (1012)
T KOG1445|consen  747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA-----PSPLVPHY  821 (1012)
T ss_pred             eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc-----Cccccccc
Confidence            9998765432211   122334567888999988877654    6888887754421 111111110     11122235


Q ss_pred             cCCCCcEEEEEECCCeEEEEECC
Q 006424          427 SRDESQRIMITSEDSKLRILDGV  449 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~  449 (645)
                      .+|...++++|-.|..|++|.+-
T Consensus       822 D~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  822 DYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             cCCCceEEEecCCCceEEEEEec
Confidence            56655788889999999999864

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.62  E-value=3.7e-14  Score=140.25  Aligned_cols=167  Identities=17%  Similarity=0.212  Sum_probs=131.2

Q ss_pred             CCC-eEEEEeCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC----------
Q 006424          297 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----------  360 (645)
Q Consensus       297 ~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~----------  360 (645)
                      +.+ -++.|-.-|.|.+.|....+..+.+.     ....|+|+.|-|.+...++++-.+|.+++||..-.          
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            345 57788888899999876543333332     45789999999988888999999999999976310          


Q ss_pred             ----c---------------EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424          361 ----R---------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  421 (645)
Q Consensus       361 ----~---------------~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  421 (645)
                          .               +..+.-..+.|+.++|+|||++||+.+.||.++|||..+..+.-.       ....-+..
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~-------mkSYFGGL  335 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV-------MKSYFGGL  335 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH-------HHhhccce
Confidence                0               111222345788999999999999999999999999987664321       11123678


Q ss_pred             EEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEec
Q 006424          422 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT  471 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp  471 (645)
                      .|++|+||| +++++|++|..|.||...+......++.|..+|..++|+|
T Consensus       336 LCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  336 LCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            999999998 8999999999999999998888889999999999999983

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=4.5e-14  Score=149.76  Aligned_cols=254  Identities=20%  Similarity=0.288  Sum_probs=176.1

Q ss_pred             CcEEEEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          201 GCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       201 ~~V~~l~fsp--dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      ..|+.+.+-.  |..+|++|+.||.|+||+-.....               ...++...                   ..
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~---------------~~~eLVTa-------------------w~ 1155 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW---------------KKPELVTA-------------------WS 1155 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEeccccccc---------------CCceeEEe-------------------ec
Confidence            4688888865  455999999999999997432110               00000000                   00


Q ss_pred             Ccee-eccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          279 PLQE-LHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       279 ~~~~-l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      .+.. +.+-.+.=.-+.|... |+|+++|.-..|+|||.+..+++..+.  ....|+++.-+-..++.+++|..||.|++
T Consensus      1156 ~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRv 1235 (1387)
T KOG1517|consen 1156 SLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRV 1235 (1387)
T ss_pred             cccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEE
Confidence            0110 1111111133566643 688888878999999999888887764  55678887766556899999999999999


Q ss_pred             EeCCCCc----EEEeeccCCC--eEEEEEccCCC-EEEEEecCCeEEEEEecCCcee-eeEEeeccccccCCCCeEEEEE
Q 006424          355 WGVCEKR----VVDWADVRDV--ISAICYIPDGK-GFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       355 wd~~~~~----~~~~~~~~~~--v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                      ||.+...    +.....|...  |..+.+.+.|- .+++|+.+|.|++||++..... ...+..+.   ..++..+++..
T Consensus      1236 yD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~---~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1236 YDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW---EYGSALTALTV 1312 (1387)
T ss_pred             eecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc---ccCccceeeee
Confidence            9998643    3345667666  99999998775 4999999999999999985221 11222211   11346899999


Q ss_pred             cCCCCcEEEEEECCCeEEEEECC-cceeeEee-----cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          427 SRDESQRIMITSEDSKLRILDGV-DVIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~-----~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ++.. ..+++|+. +.|+||++. +....++.     ....+.+.+++|+|..-++|+|+.|.+|.||.....
T Consensus      1313 H~ha-piiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1313 HEHA-PIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             ccCC-CeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            9986 68888888 999999965 22222221     124567899999999999999999999999987655

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.61  E-value=1.4e-14  Score=146.12  Aligned_cols=272  Identities=12%  Similarity=0.169  Sum_probs=195.9

Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEee
Q 006424          289 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA  366 (645)
Q Consensus       289 ~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  366 (645)
                      .|..++|-||| .|+.+. +..+.+||...|..+.++. |.+.|+|++|+. +|+.+++|+.|..|.+|.-.-.-.+. .
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~Lk-Y   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILK-Y   90 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccceee-e
Confidence            89999999998 444433 3579999999999999885 999999999999 99999999999999999865443333 4


Q ss_pred             ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424          367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  446 (645)
Q Consensus       367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw  446 (645)
                      .|.+.|.|+.|+|-...+++++-. ..-+|..........    .     ...++.+.+|..|| ++++.|-.+|+|.+-
T Consensus        91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~----k-----ss~R~~~CsWtnDG-qylalG~~nGTIsiR  159 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH----K-----SSSRIICCSWTNDG-QYLALGMFNGTISIR  159 (1081)
T ss_pred             ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh----h-----hheeEEEeeecCCC-cEEEEeccCceEEee
Confidence            688999999999988888887643 456777665443221    1     13678999999998 899999999999998


Q ss_pred             ECC-cce-eeEeecCCCCCeEEEEEecCC-----CEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEE
Q 006424          447 DGV-DVI-HKFKGLPKSGSQMSASFTTTG-----KHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV  519 (645)
Q Consensus       447 d~~-~~~-~~~~~~~~~~~i~~v~~sp~~-----~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v  519 (645)
                      +.. +.. ..-+..+...+|.+++|+|..     ..++......++.++.+................|+.+.++|....+
T Consensus       160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li  239 (1081)
T KOG1538|consen  160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL  239 (1081)
T ss_pred             cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE
Confidence            743 222 222223467799999999964     5788888899999999876544333334444455556666665555


Q ss_pred             ecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCcc
Q 006424          520 QWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI  588 (645)
Q Consensus       520 ~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~  588 (645)
                      .-+..+..+++-  +++..           ......+.++-.++.-|+++..+-+-. ||+|-.+++..
T Consensus       240 GGsdk~L~~fTR--~GvrL-----------GTvg~~D~WIWtV~~~PNsQ~v~~GCq-DGTiACyNl~f  294 (1081)
T KOG1538|consen  240 GGSDKQLSLFTR--DGVRL-----------GTVGEQDSWIWTVQAKPNSQYVVVGCQ-DGTIACYNLIF  294 (1081)
T ss_pred             ccCCCceEEEee--cCeEE-----------eeccccceeEEEEEEccCCceEEEEEc-cCeeehhhhHH
Confidence            544444333321  11110           112234567778888999998877777 89999998753

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=7.2e-15  Score=146.34  Aligned_cols=222  Identities=20%  Similarity=0.248  Sum_probs=154.9

Q ss_pred             cccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       190 ~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      .....+|.+|.++|.|+++++++.++.+|+.||+|+.|++....-      +.                           
T Consensus       334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d------p~---------------------------  380 (577)
T KOG0642|consen  334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD------PD---------------------------  380 (577)
T ss_pred             eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC------cc---------------------------
Confidence            345677999999999999999999999999999999998763100      00                           


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEE
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s  345 (645)
                       ..++ .......+.||.+.|+.+++|... +|++|+.||+++.|+.....+ .+|+   ..+....+.+-.....+.++
T Consensus       381 -ds~d-p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~  457 (577)
T KOG0642|consen  381 -DSYD-PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLA  457 (577)
T ss_pred             -cccC-cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhh
Confidence             0000 012346788999999999999765 899999999999999876666 4443   23344555554311122333


Q ss_pred             EeCCCcEEEEeCCCCcEEEeec--------cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424          346 GSIDGKVRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  417 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  417 (645)
                      ...-+.--+++........+..        ....+.-+.++|.+...+++..|+.|+++|..+........       .|
T Consensus       458 s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~-------a~  530 (577)
T KOG0642|consen  458 SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV-------AH  530 (577)
T ss_pred             hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee-------ec
Confidence            2222333333333333222211        12457778889999999999999999999999887644322       23


Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeE
Q 006424          418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF  455 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~  455 (645)
                      ...++++++.|+| -+|++++.|+.+++|.+.......
T Consensus       531 ~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  531 KDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             cceecceeecCCC-ceEEeecCCceeehhhccchheee
Confidence            4789999999998 799999999999999976444333

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=3.2e-13  Score=127.54  Aligned_cols=272  Identities=16%  Similarity=0.179  Sum_probs=183.0

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424          200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  279 (645)
Q Consensus       200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (645)
                      .-.+..++|++.-.-+|++..|-.|++|+-..                                              ..
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss----------------------------------------------t~  131 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS----------------------------------------------TC  131 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC----------------------------------------------CC
Confidence            34578899999777889999999999998664                                              11


Q ss_pred             ceeec-cCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCC----e--------EEEEec--CCCcEEEEEEeeCCCCE
Q 006424          280 LQELH-GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCN----Q--------CLNVFD--HHNYVTCVQFNPIDDNY  342 (645)
Q Consensus       280 ~~~l~-~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~----~--------~~~~~~--~~~~v~~l~~~p~~~~~  342 (645)
                      ...++ .....|+|++|-|.+  .|+.|+. +-|.+|.....    .        ....+.  .+.+|++++|++ |+..
T Consensus       132 pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~  209 (445)
T KOG2139|consen  132 PTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTI  209 (445)
T ss_pred             CceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcC-CCCE
Confidence            12222 234679999999875  5666666 55999976421    1        111222  336899999999 9999


Q ss_pred             EEEEeC-CCcEEEEeCCCCcEEEee-ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          343 FISGSI-DGKVRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       343 l~s~s~-dg~i~vwd~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      +++++. |..|.+||..++....+. ...+.++-+.|+|||.+|++++-|+..++|+....-. .+.....      .+.
T Consensus       210 l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt-~erw~lg------sgr  282 (445)
T KOG2139|consen  210 LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT-KERWILG------SGR  282 (445)
T ss_pred             EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccce-ecceecc------CCc
Confidence            999886 567999999998887765 4566788999999999999999999999996543322 1222222      258


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECCc--ce--------eeE--------eec----CCCCCeEEEEEecCCCEEEE
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGVD--VI--------HKF--------KGL----PKSGSQMSASFTTTGKHIIS  478 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--~~--------~~~--------~~~----~~~~~i~~v~~sp~~~~l~t  478 (645)
                      |...+|+|+|+.+|++.+....++-.....  ..        ...        ...    -..+.+.+++|+|.|.+||+
T Consensus       283 vqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav  362 (445)
T KOG2139|consen  283 VQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV  362 (445)
T ss_pred             eeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence            999999999977777777766665443110  00        000        001    12467889999999999998


Q ss_pred             EeCC--------ccEEEEeCCCCCcCCC----cccCCcceeeeee---cCCcEEEEecCCCCc
Q 006424          479 IGDD--------CRVYVWNYDELCFPSS----KQKNSVRSCEHFF---SEGVSVAVQWPGIGT  526 (645)
Q Consensus       479 ~s~d--------g~I~iwd~~~~~~~~~----~~~~~~~~~~~~~---~~g~~~~v~~s~~~~  526 (645)
                      .-..        +.|.+||.........    .........+.|+   .++..+.++|+.+..
T Consensus       363 ~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGri  425 (445)
T KOG2139|consen  363 IFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRI  425 (445)
T ss_pred             EEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCce
Confidence            6543        3467777654421111    0111123344454   467888888887654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=4.4e-14  Score=149.01  Aligned_cols=234  Identities=14%  Similarity=0.087  Sum_probs=144.5

Q ss_pred             CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCE
Q 006424          307 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG  383 (645)
Q Consensus       307 dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~  383 (645)
                      +..|.+||.+.........+...+...+|+| +++.|+.++.+   ..|++||+.+++...+....+....++|+|||+.
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence            4689999987655444445777899999999 99998887654   3699999998875554444445567899999998


Q ss_pred             EEEEe-cCCeEEEE--EecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeec
Q 006424          384 FIVGS-ITGTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGL  458 (645)
Q Consensus       384 l~~g~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~  458 (645)
                      |+.+. .+|.+.+|  |+.+...  ..+.  .    +...+....|+|+|..+++++..++...||++.  .......  
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~~--~~lt--~----~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--  331 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGTP--SQLT--S----GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--  331 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCCe--Eeec--c----CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--
Confidence            88765 68876666  4444332  2221  1    124577899999985445555567888888753  2211111  


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccc
Q 006424          459 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRD  538 (645)
Q Consensus       459 ~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~  538 (645)
                      .+..  ....|+|||++|+.++.++ +.+||+.++.........            ....++|+|+|..++..+.++...
T Consensus       332 ~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~------------~~~~~~~sPdG~~i~~~s~~g~~~  396 (429)
T PRK01742        332 GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF------------LDESPSISPNGIMIIYSSTQGLGK  396 (429)
T ss_pred             cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC------------CCCCceECCCCCEEEEEEcCCCce
Confidence            1222  3578999999999887765 566999877422111000            012355778877777655543322


Q ss_pred             cCcccccccc-CCccCCCCccccCccccC
Q 006424          539 CSQKWDNLET-APWIRDSERFSLGSWFSN  566 (645)
Q Consensus       539 ~~~~w~~~~~-~~~~~~~~~~~~~~~fs~  566 (645)
                      ....++.... ...+..++..+...+|||
T Consensus       397 ~l~~~~~~G~~~~~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        397 VLQLVSADGRFKARLPGSDGQVKFPAWSP  425 (429)
T ss_pred             EEEEEECCCCceEEccCCCCCCCCcccCC
Confidence            2222211111 112334445555566665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1.4e-14  Score=139.82  Aligned_cols=197  Identities=17%  Similarity=0.199  Sum_probs=150.5

Q ss_pred             EEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-
Q 006424          291 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-  367 (645)
Q Consensus       291 ~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-  367 (645)
                      .+++|+.+| .+++++.||++|+|+..+...+... .|...|.++.|+| |+++|++-+.| ..+||+.+++..+.... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            788999886 9999999999999997766655444 5999999999999 99999999999 89999999986555332 


Q ss_pred             --cCCCeEEEEEccCC-----CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424          368 --VRDVISAICYIPDG-----KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  440 (645)
Q Consensus       368 --~~~~v~~l~~sp~g-----~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d  440 (645)
                        .+.....+.|+.++     ..++.....+.|..||+...... ....... .......|++++.+++| ++++.|+.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~-~~~~~~siSsl~VS~dG-kf~AlGT~d  302 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRK-KIKRFKSISSLAVSDDG-KFLALGTMD  302 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhh-hhhccCcceeEEEcCCC-cEEEEeccC
Confidence              34456677888776     33333445667888777644431 1111111 11112579999999998 899999999


Q ss_pred             CeEEEEECCcceeeE-eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          441 SKLRILDGVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       441 g~I~iwd~~~~~~~~-~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      |.|-|++..++...+ ..+.|...|+.+.|+||.+++++.+.|..+.+..+.-
T Consensus       303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999987654433 3356888999999999999999999999998887754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=2.6e-14  Score=141.43  Aligned_cols=246  Identities=19%  Similarity=0.238  Sum_probs=170.1

Q ss_pred             ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe--cCCCcEEEEEEeeCCC-CEEEEEeCCCcEEEE
Q 006424          280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDD-NYFISGSIDGKVRIW  355 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~~~p~~~-~~l~s~s~dg~i~vw  355 (645)
                      ...+.||++.|+|+.|+.+| +|++||.|-.+.|||.-..+.+..+  +|...|.++.|-|..+ .++++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            46788999999999999998 9999999999999999988888877  4999999999999544 468889999999999


Q ss_pred             eCCCCc-----------EEEeeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccc---cccCCCC
Q 006424          356 GVCEKR-----------VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---KKTSGNK  420 (645)
Q Consensus       356 d~~~~~-----------~~~~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~  420 (645)
                      |+...+           ...+..|...|..++-.|++ ..+.++++||+++-||++....-......+..   ....--.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            997421           12256678889999999988 78999999999999999863321110000000   0001134


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCC--
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS--  498 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~--  498 (645)
                      ..|+..+|..+.+|++|+.|--.++||.+.....+......      .++|-       -.++.|+-|--...+....  
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~------~~~pp-------~~~~cv~yf~p~hlkn~~gn~  269 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM------NTCPP-------KDCRCVRYFSPGHLKNSQGNL  269 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc------cCCCC-------cccchhheecCccccCccccc
Confidence            67899999988999999999999999976544444331110      01110       0122222221111100000  


Q ss_pred             cccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccc
Q 006424          499 KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRD  538 (645)
Q Consensus       499 ~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~  538 (645)
                      .+.........|+|+|.-+.|.|+....+|+.+..+....
T Consensus       270 ~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  270 DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence            0111123456788999889999999999999887775543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=2.8e-12  Score=135.03  Aligned_cols=200  Identities=14%  Similarity=0.182  Sum_probs=136.5

Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEe---CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE-eCCC--cEE
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCS---MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDG--KVR  353 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s---~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~-s~dg--~i~  353 (645)
                      +.+..+...+.+.+|+|+| .|+..+   .+..|.+||+.+++..........+..+.|+| +++.|+.. +.+|  .|+
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEE
Confidence            4445567789999999998 666543   24579999998887655444444556789999 88877754 4444  599


Q ss_pred             EEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC-CeEEEE--EecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          354 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       354 vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d-g~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      +||+.+++...+..+...+....|+|||+.|+..+.+ |...+|  |+.+...  ..+...      ........|+|+|
T Consensus       271 ~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~~lt~~------~~~~~~~~~SpDG  342 (429)
T PRK03629        271 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--QRITWE------GSQNQDADVSSDG  342 (429)
T ss_pred             EEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--EEeecC------CCCccCEEECCCC
Confidence            9999998888877776778899999999988777654 444555  5554432  222222      1345578899998


Q ss_pred             CcEEEEEEC-C--CeEEEEECCcce-eeEeecCCCCCeEEEEEecCCCEEEEEeCCcc---EEEEeCCCC
Q 006424          431 SQRIMITSE-D--SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCR---VYVWNYDEL  493 (645)
Q Consensus       431 ~~~l~~~s~-d--g~I~iwd~~~~~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~---I~iwd~~~~  493 (645)
                       .+++..+. +  ..|.+||+.... ..+..   ........|+|||++|+.++.++.   +++++++..
T Consensus       343 -~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~  408 (429)
T PRK03629        343 -KFMVMVSSNGGQQHIAKQDLATGGVQVLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR  408 (429)
T ss_pred             -CEEEEEEccCCCceEEEEECCCCCeEEeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence             55655443 3  358888976432 22221   122346789999999999987764   777787654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.54  E-value=9.1e-15  Score=151.25  Aligned_cols=282  Identities=18%  Similarity=0.273  Sum_probs=194.6

Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      +.++.+.||...|+|+.|...| ++++|+.|..|+||..+++.++... +|.+.++.++.+. +.-++++++.|..|++|
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEE
Confidence            4456778999999999999887 8999999999999999999998888 5999999999987 77789999999999999


Q ss_pred             eCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424          356 GVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  434 (645)
Q Consensus       356 d~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l  434 (645)
                      .+..+..+. +.+|.+.|++++|+|-.    +.+.||++++||.+-.....   ............+.++.|...+ ..+
T Consensus       260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y---~prp~~~~~~~~~~s~~~~~~~-~~f  331 (1113)
T KOG0644|consen  260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIY---VPRPLKFTEKDLVDSILFENNG-DRF  331 (1113)
T ss_pred             ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccccccc---CCCCCCcccccceeeeeccccc-ccc
Confidence            999998876 68999999999999954    67889999999998211111   1111111223567788888887 789


Q ss_pred             EEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecC-CCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecC
Q 006424          435 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE  513 (645)
Q Consensus       435 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~-~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  513 (645)
                      ++++.|+.-..|.......      +...+.-+.++.+ ..+.+++-.+-.+++|++.++...-..          ..+.
T Consensus       332 ~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l----------~ghs  395 (1113)
T KOG0644|consen  332 LTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL----------MGHS  395 (1113)
T ss_pred             ccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh----------cccc
Confidence            9999999999887542211      1111111222222 256677778899999999888422111          0111


Q ss_pred             CcEEEEecCCCCcccc-ccCCCCccccCccccccccCC---ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccC
Q 006424          514 GVSVAVQWPGIGTEQK-SLCSSSLRDCSQKWDNLETAP---WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  589 (645)
Q Consensus       514 g~~~~v~~s~~~~~l~-~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~  589 (645)
                      ..+.++.++|-...++ +.+.|   +...+|+..++.+   ...+ ...+....||+||+.++-.+. -|.+.|.....+
T Consensus       396 d~~yvLd~Hpfn~ri~msag~d---gst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~-hgql~i~g~gqs  470 (1113)
T KOG0644|consen  396 DEVYVLDVHPFNPRIAMSAGYD---GSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDD-HGQLYILGTGQS  470 (1113)
T ss_pred             cceeeeeecCCCcHhhhhccCC---CceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCC-CCceEEeccCCC
Confidence            2233444555444443 22222   3345566655544   1122 344667799999997766555 677877765444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=4.2e-12  Score=134.50  Aligned_cols=203  Identities=15%  Similarity=0.189  Sum_probs=142.0

Q ss_pred             CceeeccCccCeEEEEEcCCC-eEEEEeC---CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEE-EEeCCCc--
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLLSCSM---DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGK--  351 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~-s~s~dg~--  351 (645)
                      ..+.+..|...+.+.+|+|+| .|+..+.   +..|.+||+.+++......+...+.+.+|+| +++.|+ +.+.++.  
T Consensus       193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~  271 (435)
T PRK05137        193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTD  271 (435)
T ss_pred             CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCce
Confidence            345666788899999999998 6666553   4689999999887755555666778899999 887765 5555554  


Q ss_pred             EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          352 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       352 i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      |++||+.++....+..+........|+|||+.++..+. +|  .|+++|+.+....  .+...      ...+....|+|
T Consensus       272 Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~--~lt~~------~~~~~~~~~Sp  343 (435)
T PRK05137        272 IYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR--RISFG------GGRYSTPVWSP  343 (435)
T ss_pred             EEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE--EeecC------CCcccCeEECC
Confidence            88889999888887777777788999999998887764 33  5777787655432  22211      13456688999


Q ss_pred             CCCcEEEEEECC---CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC------ccEEEEeCCCC
Q 006424          429 DESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD------CRVYVWNYDEL  493 (645)
Q Consensus       429 ~g~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d------g~I~iwd~~~~  493 (645)
                      +| ..++..+.+   ..|.+||..........  ....+....|+|||+.|+..+.+      ..++++|++++
T Consensus       344 dG-~~ia~~~~~~~~~~i~~~d~~~~~~~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        344 RG-DLIAFTKQGGGQFSIGVMKPDGSGERILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             CC-CEEEEEEcCCCceEEEEEECCCCceEecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            98 566655443   36888886532221111  22346778999999998776543      25777787654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=4.2e-12  Score=133.84  Aligned_cols=202  Identities=17%  Similarity=0.199  Sum_probs=133.4

Q ss_pred             ceeeccCccCeEEEEEcCCC-eEEEEeCC---CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEE-EEeCCCcEEE
Q 006424          280 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRI  354 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~-s~s~dg~i~v  354 (645)
                      .+.+..+...+.+.+|+|++ .|+..+.+   ..|.+||+.+++..........+.+..|+| +++.|+ +.+.++...+
T Consensus       188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~I  266 (427)
T PRK02889        188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVALSRDGNSQI  266 (427)
T ss_pred             ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCCceE
Confidence            34455677889999999998 67666543   359999999887655544555667899999 888776 5566776555


Q ss_pred             E--eCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424          355 W--GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       355 w--d~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                      |  |+.++....+..+........|+|||+.++..+. +|...+|.+.........+...+      .......|+|+| 
T Consensus       267 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g------~~~~~~~~SpDG-  339 (427)
T PRK02889        267 YTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG------SYNTSPRISPDG-  339 (427)
T ss_pred             EEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC------CCcCceEECCCC-
Confidence            5  5666666666666666677899999998876654 56667776643222222222222      223457899998 


Q ss_pred             cEEEEEECCC---eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCc---cEEEEeCC
Q 006424          432 QRIMITSEDS---KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYD  491 (645)
Q Consensus       432 ~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg---~I~iwd~~  491 (645)
                      ++++..+.++   .|.+||+.........  .........|+|||++|+.++.++   .+++.+.+
T Consensus       340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt--~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~  403 (427)
T PRK02889        340 KLLAYISRVGGAFKLYVQDLATGQVTALT--DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD  403 (427)
T ss_pred             CEEEEEEccCCcEEEEEEECCCCCeEEcc--CCCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence            6676665543   6999997643222211  222346789999999998887543   34454553

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.53  E-value=5.3e-12  Score=117.91  Aligned_cols=277  Identities=13%  Similarity=0.140  Sum_probs=182.8

Q ss_pred             CcEEEEEECCCCCEEEE-EeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424          201 GCIWTLKFSPDGRYLAS-GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  279 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (645)
                      +.|..+.|..|..++++ ...|+.|.+|++...+.                                             
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew---------------------------------------------   83 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW---------------------------------------------   83 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeeccee---------------------------------------------
Confidence            45778899988876554 57789999999976322                                             


Q ss_pred             ceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC--------
Q 006424          280 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID--------  349 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d--------  349 (645)
                      ...+.....++.+++|+|+|  .|.+...|-.|.+|.+.+.+....--....+..++|+| ++++.+.++.-        
T Consensus        84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i  162 (447)
T KOG4497|consen   84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQI  162 (447)
T ss_pred             EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHH
Confidence            33445567789999999998  67788899999999998877765544445668889999 88887766531        


Q ss_pred             ----------------------------CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC
Q 006424          350 ----------------------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  401 (645)
Q Consensus       350 ----------------------------g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~  401 (645)
                                                  ..+.+||---.-.+......-.+..+.|+|.++++++|+.|+.+++.+--+.
T Consensus       163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW  242 (447)
T KOG4497|consen  163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW  242 (447)
T ss_pred             HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeee
Confidence                                        2233444221111122233356888999999999999999998876432110


Q ss_pred             ceee--------------------------------------------------e----EEeec-----cccccCCCCeE
Q 006424          402 DLKL--------------------------------------------------E----KVDFH-----DRKKTSGNKIT  422 (645)
Q Consensus       402 ~~~~--------------------------------------------------~----~~~~~-----~~~~~~~~~i~  422 (645)
                      +...                                                  +    ...++     .........+.
T Consensus       243 k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g  322 (447)
T KOG4497|consen  243 KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAG  322 (447)
T ss_pred             eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccc
Confidence            0000                                                  0    00000     00111224566


Q ss_pred             EEEEcCCCCcEEEEEECC--CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424          423 GIQFSRDESQRIMITSED--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ  500 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~d--g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~  500 (645)
                      -++|++|. .++++-...  +.+.+||++... .........+|....|+|....|+.+....++++|..........  
T Consensus       323 ~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~-l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v--  398 (447)
T KOG4497|consen  323 KLAFSCDS-TYAATRNDKYPNALWLWDLQNLK-LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV--  398 (447)
T ss_pred             eeeecCCc-eEEeeecCCCCceEEEEechhhh-hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec--
Confidence            78999995 666665443  689999987432 222223567899999999999999988888999998765311111  


Q ss_pred             cCCcceeeeeecCCcEEEEecCCCCccccccCCCCc
Q 006424          501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL  536 (645)
Q Consensus       501 ~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~  536 (645)
                               ..+.-.+..+.|.-+|..++.++.|..
T Consensus       399 ---------P~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  399 ---------PKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             ---------CCCCceeeeEEecCCCcEEEEEcCCce
Confidence                     111224667889888888887766644

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=3.1e-12  Score=135.36  Aligned_cols=202  Identities=18%  Similarity=0.220  Sum_probs=137.8

Q ss_pred             ceeeccCccCeEEEEEcCCC-eEEEEeCC---CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEE-EEeCCC--cE
Q 006424          280 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDG--KV  352 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~-s~s~dg--~i  352 (645)
                      .+.+..|...+.+.+|+|++ .|+.++.+   ..|.+||+.+++............+..|+| +++.++ +.+.+|  .|
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~~I  274 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSRDGNPEI  274 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeCCCCceE
Confidence            34555677789999999998 67766643   469999998887655444455566889999 887665 455555  59


Q ss_pred             EEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CCe--EEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGT--CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      ++||+.+++...+..+.......+|+|||+.++.++. +|.  |+++|+.+...  ..+...+      ......+|+|+
T Consensus       275 y~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~--~~lt~~g------~~~~~~~~SpD  346 (433)
T PRK04922        275 YVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA--ERLTFQG------NYNARASVSPD  346 (433)
T ss_pred             EEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEeecCC------CCccCEEECCC
Confidence            9999999988777766666678999999998887764 454  55556555432  2222222      23446899999


Q ss_pred             CCcEEEEEECC-C--eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC---ccEEEEeCCCC
Q 006424          430 ESQRIMITSED-S--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDEL  493 (645)
Q Consensus       430 g~~~l~~~s~d-g--~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d---g~I~iwd~~~~  493 (645)
                      | +.++..+.+ +  .|.+||..........  +........|+|||++|+..+.+   +.|++++++..
T Consensus       347 G-~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        347 G-KKIAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             C-CEEEEEECCCCceeEEEEECCCCCeEECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            8 566655433 2  6899997643222111  22234567899999998877653   46788887644

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=7.6e-12  Score=118.41  Aligned_cols=256  Identities=13%  Similarity=0.270  Sum_probs=164.6

Q ss_pred             cCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          200 KGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       200 ~~~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      +..|+|++|-|.+ +-|+.|+..| |.+|......-......                               .......
T Consensus       140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~-------------------------------~~s~~~~  187 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIR-------------------------------MMSTHHL  187 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccc-------------------------------cccccch
Confidence            4579999999964 5788888777 89998764111000000                               0000011


Q ss_pred             CceeeccCccCeEEEEEcCCC-eEEEEeC-CCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~-dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      .+....|| .+|+++.|.+|| .+++++. |..|.|||.+++..+... ...+.++-+.|+| ++++|+.++.|+..++|
T Consensus       188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw  265 (445)
T KOG2139|consen  188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLW  265 (445)
T ss_pred             hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeee
Confidence            22334456 789999999998 7887776 578999999998877666 3556788999999 99999999999999999


Q ss_pred             eCC-CCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce--eee------E----Eee-----ccccccC
Q 006424          356 GVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL--KLE------K----VDF-----HDRKKTS  417 (645)
Q Consensus       356 d~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~--~~~------~----~~~-----~~~~~~~  417 (645)
                      +.. +-......-..+.|...+|+|+|++|+.++.. .-.+|.+.-...  ...      .    ..+     ......-
T Consensus       266 ~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~  344 (445)
T KOG2139|consen  266 QENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLC  344 (445)
T ss_pred             hhcccceecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccc
Confidence            544 44444455556699999999999987765532 334444421110  000      0    000     0111122


Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCC--------eEEEEECCc-ceeeEe--ecCCCCCeEEEEEec---CCCEEEEEeCCc
Q 006424          418 GNKITGIQFSRDESQRIMITSEDS--------KLRILDGVD-VIHKFK--GLPKSGSQMSASFTT---TGKHIISIGDDC  483 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~dg--------~I~iwd~~~-~~~~~~--~~~~~~~i~~v~~sp---~~~~l~t~s~dg  483 (645)
                      ++.+.+++|.|.| .+|++.-..+        .|.+||.+. ....+.  +........-++|+|   ++.+|..+=+.|
T Consensus       345 cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTG  423 (445)
T KOG2139|consen  345 CGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTG  423 (445)
T ss_pred             cCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccC
Confidence            5778899999998 7888876553        366788663 222222  222223345667766   566777776778


Q ss_pred             cEEEEeCC
Q 006424          484 RVYVWNYD  491 (645)
Q Consensus       484 ~I~iwd~~  491 (645)
                      .+.-|++.
T Consensus       424 riq~ypl~  431 (445)
T KOG2139|consen  424 RIQRYPLT  431 (445)
T ss_pred             ceEeeeeE
Confidence            88877764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.52  E-value=9.2e-12  Score=118.39  Aligned_cols=233  Identities=9%  Similarity=0.023  Sum_probs=156.6

Q ss_pred             ccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEE-EecCCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCcE
Q 006424          287 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRV  362 (645)
Q Consensus       287 ~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~  362 (645)
                      ...+..+.|+.+. .|..|+.|| .+++..+...... .......|..+-|+   ..++|..+.+.  .+++++++.+..
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKTT   80 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc---cceeEEEecCCCceEEEEEcccCce
Confidence            3456666788776 455566665 6777765433311 11233456666674   46666666554  499999988887


Q ss_pred             EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE-E-CC
Q 006424          363 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-S-ED  440 (645)
Q Consensus       363 ~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~-s-~d  440 (645)
                      +.-......|.++.++.  +.|++.-.+ .|+|||+++.+.........    .+...+..+++++.+ .+++.- + ..
T Consensus        81 ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~----~n~~gl~AlS~n~~n-~ylAyp~s~t~  152 (391)
T KOG2110|consen   81 ICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTP----PNPKGLCALSPNNAN-CYLAYPGSTTS  152 (391)
T ss_pred             EEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccC----CCccceEeeccCCCC-ceEEecCCCCC
Confidence            77667778899998865  355555544 49999999887643321111    123456666666665 455543 3 34


Q ss_pred             CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc-EEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEE
Q 006424          441 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR-VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV  519 (645)
Q Consensus       441 g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v  519 (645)
                      |.|.+||..+.........|.+.+.+++|+++|.+|||+|+.|+ |+|+.+.+++....-+....  +      -.+..+
T Consensus       153 GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--~------~~IySL  224 (391)
T KOG2110|consen  153 GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--P------VSIYSL  224 (391)
T ss_pred             ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--e------eEEEEE
Confidence            89999999877777777779999999999999999999999886 79999998864443332211  1      226778


Q ss_pred             ecCCCCccccccCCCCcccc
Q 006424          520 QWPGIGTEQKSLCSSSLRDC  539 (645)
Q Consensus       520 ~~s~~~~~l~~~~~~~~~~~  539 (645)
                      +|+|++.+|.+.++......
T Consensus       225 ~Fs~ds~~L~~sS~TeTVHi  244 (391)
T KOG2110|consen  225 SFSPDSQFLAASSNTETVHI  244 (391)
T ss_pred             EECCCCCeEEEecCCCeEEE
Confidence            88888888887666544443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=4.3e-12  Score=133.58  Aligned_cols=219  Identities=13%  Similarity=0.061  Sum_probs=147.1

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      +.+..+...+.+.+|||||+.|+..+.   +..+.+|++.++..                                    
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~------------------------------------  235 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------------------------------------  235 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe------------------------------------
Confidence            335557778999999999998887643   34688898876321                                    


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCC-eEEE-EeCCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLS-CSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s-~s~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                             ..+..+.   +.+....|+|+| .|+. .+.+|  .|.+||+.+++......+...+....|+| +++.|+.+
T Consensus       236 -------~~l~~~~---~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~  304 (429)
T PRK03629        236 -------RQVASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYT  304 (429)
T ss_pred             -------EEccCCC---CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEE
Confidence                   1112222   334467999998 5554 34455  58899999887766665656778899999 99988777


Q ss_pred             eCC-C--cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC---CeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          347 SID-G--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       347 s~d-g--~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      +.+ +  .|+++|+.++....+...........|+|||++++..+.+   ..|.+||+.+.....  +  ...     ..
T Consensus       305 s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~--L--t~~-----~~  375 (429)
T PRK03629        305 SDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV--L--TDT-----FL  375 (429)
T ss_pred             eCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE--e--CCC-----CC
Confidence            654 3  4555677777766665555556778999999998876543   357888987765321  1  111     12


Q ss_pred             eEEEEEcCCCCcEEEEEECCCe---EEEEECCc-ceeeEeecCCCCCeEEEEEec
Q 006424          421 ITGIQFSRDESQRIMITSEDSK---LRILDGVD-VIHKFKGLPKSGSQMSASFTT  471 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~---I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp  471 (645)
                      .....|+||| ..++.++.++.   +.++++.. ....+..  +.+.+...+|+|
T Consensus       376 ~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~--~~~~~~~p~Wsp  427 (429)
T PRK03629        376 DETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRFKARLPA--TDGQVKFPAWSP  427 (429)
T ss_pred             CCCceECCCC-CEEEEEEcCCCceEEEEEECCCCCeEECcc--CCCCcCCcccCC
Confidence            3357899998 67777776653   66777642 2333333  566778888887

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.50  E-value=1.1e-13  Score=134.79  Aligned_cols=230  Identities=16%  Similarity=0.241  Sum_probs=181.1

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      -.-..+.|+.+|++|+.|+.-|.|-.+|+.+...                                             .
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L---------------------------------------------~  164 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL---------------------------------------------H  164 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeeccccee---------------------------------------------e
Confidence            3456889999999999999999999999987432                                             2


Q ss_pred             eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424          281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  360 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~  360 (645)
                      ..+. -...|.++.|-.+..+++......++|||-. |..+..+.....|..+.|.| ..-+|++++..|.++.-|+.+|
T Consensus       165 ~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~G  241 (545)
T KOG1272|consen  165 FEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTG  241 (545)
T ss_pred             eeee-hhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCchhhhcccc-hhheeeecccCCceEEEeechh
Confidence            2222 3456888888877666667777899999964 77777777677899999999 7788999999999999999999


Q ss_pred             cEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424          361 RVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  439 (645)
Q Consensus       361 ~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~  439 (645)
                      +++. +....+.+..++-+|-...+-+|...|+|.+|............       .|.++|.++++.++| ++++|++.
T Consensus       242 klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL-------cH~g~V~siAv~~~G-~YMaTtG~  313 (545)
T KOG1272|consen  242 KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL-------CHRGPVSSIAVDRGG-RYMATTGL  313 (545)
T ss_pred             hhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-------hcCCCcceEEECCCC-cEEeeccc
Confidence            9876 44556778889999988899999999999999988766543322       234899999999998 89999999


Q ss_pred             CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          440 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       440 dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                      |..++|||++...+...... ..+...+++|..|  +++.|....|.||.
T Consensus       314 Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  314 DRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             ccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence            99999999987654444432 4567788887655  33444566899994

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=3.1e-12  Score=114.58  Aligned_cols=187  Identities=16%  Similarity=0.290  Sum_probs=143.7

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      .|++|-..|..+-+++++.|+.+.-||+++                                             ++..+
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~---------------------------------------------G~i~r  150 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLED---------------------------------------------GRIQR  150 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecC---------------------------------------------CEEEE
Confidence            589999999888788888999999999998                                             45568


Q ss_pred             eeccCccCeEEEEEc-CCCeEEEEeCCCcEEEEecCCCeEEEEec-----------CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          282 ELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----------HHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-----------~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                      +++||++.|.++.-- .++.+++|+.||++++||.++++++..++           ...+|.+++.   +...+++|+ .
T Consensus       151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-G  226 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-G  226 (325)
T ss_pred             EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-C
Confidence            899999999999984 45699999999999999999999988773           2345677776   456777765 5


Q ss_pred             CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      ..+.+|+++..+.......+..+..+.|..  +.+++++..+.+.-|.+.+.-..  .+...      ....++..|+..
T Consensus       227 p~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gvl~a--~ip~~------s~~c~s~s~~~~  296 (325)
T KOG0649|consen  227 PKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNHVQSYTLNGVLQA--NIPVE------STACYSASWQTS  296 (325)
T ss_pred             CceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccceeeeeeccEEEE--eccCC------ccceeeecccCC
Confidence            679999999999999999999999999864  46888888889999988753221  11111      134555556544


Q ss_pred             CCcEEEEEECCCeEEEEE
Q 006424          430 ESQRIMITSEDSKLRILD  447 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd  447 (645)
                      --+++-.++....+.|+.
T Consensus       297 p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  297 PIKFISIAGFSNKLHILK  314 (325)
T ss_pred             ceEEEEecccceeeeeee
Confidence            335666667777777664

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=3.3e-12  Score=134.60  Aligned_cols=205  Identities=14%  Similarity=0.133  Sum_probs=130.2

Q ss_pred             CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEE
Q 006424          308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF  384 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l  384 (645)
                      ..|.++|...........+...+.+.+|+| +++.|+..+.+   ..|++||+.+++...+....+...+..|+|||+.+
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            467777775444444446777899999999 99988877643   35999999998877666566677789999999988


Q ss_pred             EE-EecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC--Ccc-eeeEeecCC
Q 006424          385 IV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG--VDV-IHKFKGLPK  460 (645)
Q Consensus       385 ~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~--~~~-~~~~~~~~~  460 (645)
                      +. .+.+|...+|.+.........+  ..    +........|+|||..+++++..++...+|..  ... ...+..  .
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~~~~l--t~----~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~  326 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSGLRRL--TQ----SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF--T  326 (427)
T ss_pred             EEEEccCCCceEEEEECCCCCcEEC--CC----CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec--C
Confidence            75 5678877777654322112211  11    12345667899998444444444566666653  321 222222  2


Q ss_pred             CCCeEEEEEecCCCEEEEEeCCc---cEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424          461 SGSQMSASFTTTGKHIISIGDDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS  533 (645)
Q Consensus       461 ~~~i~~v~~sp~~~~l~t~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~  533 (645)
                      ........|||||++|+..+.++   .|++||+.++........            +......|+|||..|+....
T Consensus       327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~------------~~~~~p~~spdg~~l~~~~~  390 (427)
T PRK02889        327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT------------TRDESPSFAPNGRYILYATQ  390 (427)
T ss_pred             CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC------------CCccCceECCCCCEEEEEEe
Confidence            23344678999999998877654   699999987743221111            11134567777776665444

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.6e-13  Score=134.38  Aligned_cols=251  Identities=19%  Similarity=0.246  Sum_probs=184.2

Q ss_pred             cccccCcEEEEEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          196 IQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       196 l~~H~~~V~~l~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      ..||...|....|-|.  .+.+++++.||.+++=.+.....                                       
T Consensus       181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~---------------------------------------  221 (559)
T KOG1334|consen  181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY---------------------------------------  221 (559)
T ss_pred             ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccc---------------------------------------
Confidence            4578888988889884  46899999999999866543111                                       


Q ss_pred             eccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe----cCCC---cEEEEEEeeCCCCEEE
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF----DHHN---YVTCVQFNPIDDNYFI  344 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~----~~~~---~v~~l~~~p~~~~~l~  344 (645)
                         ......+..|.++|.-++.-|+.  .|++++.|+.+.-.|++.+.+...+    .+..   ....++.+|.+.+.++
T Consensus       222 ---~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa  298 (559)
T KOG1334|consen  222 ---VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA  298 (559)
T ss_pred             ---eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence               11234556799999999998875  7999999999999999887665444    2333   5778999997778999


Q ss_pred             EEeCCCcEEEEeCCCCcEE-------Ee------eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce--------
Q 006424          345 SGSIDGKVRIWGVCEKRVV-------DW------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL--------  403 (645)
Q Consensus       345 s~s~dg~i~vwd~~~~~~~-------~~------~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~--------  403 (645)
                      +++.|..+++||.+.-...       .+      ....-.|+++.|+.++.-++++..|-.|+++.-.-+..        
T Consensus       299 VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~  378 (559)
T KOG1334|consen  299 VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSP  378 (559)
T ss_pred             cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcc
Confidence            9999999999998752211       11      12344699999999998888999999999995432221        


Q ss_pred             --eeeEEeeccccccCCCCeEEEEEc-CCCCcEEEEEECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEecCCCEEEE
Q 006424          404 --KLEKVDFHDRKKTSGNKITGIQFS-RDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIIS  478 (645)
Q Consensus       404 --~~~~~~~~~~~~~~~~~i~~i~~s-~~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp~~~~l~t  478 (645)
                        ......+.++..  ...|.++-|- |. ..++++|+..|.|.||+-..  .++.+.+  ....|+|+.-+|--..||+
T Consensus       379 ~~~~~k~vYKGHrN--~~TVKgVNFfGPr-sEyVvSGSDCGhIFiW~K~t~eii~~Meg--Dr~VVNCLEpHP~~PvLAs  453 (559)
T KOG1334|consen  379 REQYVKRVYKGHRN--SRTVKGVNFFGPR-SEYVVSGSDCGHIFIWDKKTGEIIRFMEG--DRHVVNCLEPHPHLPVLAS  453 (559)
T ss_pred             hhhccchhhccccc--ccccceeeeccCc-cceEEecCccceEEEEecchhHHHHHhhc--ccceEeccCCCCCCchhhc
Confidence              111111233322  2347777765 44 47999999999999999653  3444444  3448999999999999999


Q ss_pred             EeCCccEEEEeCCCC
Q 006424          479 IGDDCRVYVWNYDEL  493 (645)
Q Consensus       479 ~s~dg~I~iwd~~~~  493 (645)
                      +|-|.-|+||--.+.
T Consensus       454 SGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  454 SGIDHDVKIWTPLTA  468 (559)
T ss_pred             cCCccceeeecCCcc
Confidence            999999999987444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.48  E-value=3.9e-12  Score=137.50  Aligned_cols=181  Identities=12%  Similarity=0.208  Sum_probs=129.4

Q ss_pred             EecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc--------EEEeeccCCCeEEEEEccCCCE
Q 006424          313 WQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR--------VVDWADVRDVISAICYIPDGKG  383 (645)
Q Consensus       313 wd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~--------~~~~~~~~~~v~~l~~sp~g~~  383 (645)
                      |+.+ |..+..+ .|...+..++.++.++.+|++||.||+|++||.+.-.        ..++......+.++...+.+..
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            6665 4555444 6888898999988566999999999999999987521        2234446778999999999999


Q ss_pred             EEEEecCCeEEEEEecCCceeeeEEee-ccccccCCCCeEE-EEEcCCCCc-EEEEEECCCeEEEEECCcc--eeeEeec
Q 006424          384 FIVGSITGTCHFYKASGNDLKLEKVDF-HDRKKTSGNKITG-IQFSRDESQ-RIMITSEDSKLRILDGVDV--IHKFKGL  458 (645)
Q Consensus       384 l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~i~~-i~~s~~g~~-~l~~~s~dg~I~iwd~~~~--~~~~~~~  458 (645)
                      +|+++.||.|++.++............ ........+.+.+ -+|...... .++.+..-+.|..||.+..  ....+..
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            999999999999998763222111110 0001111233333 344433223 7888888899999998743  2333444


Q ss_pred             CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          459 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       459 ~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      ...+.|++++.+|.+.++++|+..|.+.+||++-+.
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCc
Confidence            467899999999999999999999999999998663

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=7.9e-12  Score=132.41  Aligned_cols=219  Identities=13%  Similarity=0.137  Sum_probs=148.6

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      +.+..|.+.+.+.+|+|||+.|+..+.   +..|.+||+.++.                                     
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-------------------------------------  237 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-------------------------------------  237 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-------------------------------------
Confidence            456678889999999999999888764   4679999997632                                     


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCC-eE-EEEeCCCc--EEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l-~s~s~dg~--I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                               ...+..+.+.+...+|+|+| .| ++.+.++.  |.+||+.++.......+........|+| +++.++..
T Consensus       238 ---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~  307 (435)
T PRK05137        238 ---------RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFE  307 (435)
T ss_pred             ---------EEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEE
Confidence                     12334456667788999998 44 46666665  7777988887665555666677889999 89888777


Q ss_pred             eC-CC--cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC---CeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          347 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       347 s~-dg--~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      +. +|  .|+++|+.++....+......+....|+|+|+.++....+   ..|.+||+.+.....  +  ..     ...
T Consensus       308 s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~--l--t~-----~~~  378 (435)
T PRK05137        308 SDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI--L--TS-----GFL  378 (435)
T ss_pred             ECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe--c--cC-----CCC
Confidence            64 33  6888898888777666556667788999999999887653   357788875543221  1  11     123


Q ss_pred             eEEEEEcCCCCcEEEE-EECC-----CeEEEEECCcceeeEeecCCCCCeEEEEEec
Q 006424          421 ITGIQFSRDESQRIMI-TSED-----SKLRILDGVDVIHKFKGLPKSGSQMSASFTT  471 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~-~s~d-----g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp  471 (645)
                      +....|+||| +.|+. +...     ..++++|+...... ... ..+.+...+|+|
T Consensus       379 ~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        379 VEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRNER-EVP-TPGDASDPAWSP  432 (435)
T ss_pred             CCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCceE-Ecc-CCCCccCcccCC
Confidence            5678999998 45544 4333     25777776532221 111 233455666665

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.48  E-value=1.4e-13  Score=133.98  Aligned_cols=226  Identities=12%  Similarity=0.137  Sum_probs=177.1

Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec
Q 006424          289 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD  367 (645)
Q Consensus       289 ~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  367 (645)
                      .-..+.|+.+| .++.|+..|.|-.+|..+++....+.....|..+.|.. +.+++|++- ...++|||-.+-++..+. 
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AVAQ-K~y~yvYD~~GtElHClk-  207 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-NEQFFAVAQ-KKYVYVYDNNGTELHCLK-  207 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhc-chHHHHhhh-hceEEEecCCCcEEeehh-
Confidence            34567888887 89999999999999999999999999888999999998 777877765 678999997666655544 


Q ss_pred             cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424          368 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  447 (645)
Q Consensus       368 ~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd  447 (645)
                      ....|..+.|-|..-+|++++..|.++.-|+..+..... +      ....+.+..++-+|-+ ..+-+|...|+|.+|.
T Consensus       208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~-~------~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWS  279 (545)
T KOG1272|consen  208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS-I------RTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWS  279 (545)
T ss_pred             hcCchhhhcccchhheeeecccCCceEEEeechhhhhHH-H------HccCCccchhhcCCcc-ceEEEcCCCceEEecC
Confidence            345788999999998999999999999999998876432 1      1123677888889986 6888999999999999


Q ss_pred             CCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc
Q 006424          448 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT  526 (645)
Q Consensus       448 ~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~  526 (645)
                      ........+...|.++|.++++.++|+|+||+|.|..++|||+++-..+.............++..|. +|+++.+.-.
T Consensus       280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA~~~G~~v~  357 (545)
T KOG1272|consen  280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LALSYGDHVQ  357 (545)
T ss_pred             CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccc-eeeecCCeee
Confidence            76544444555599999999999999999999999999999999876444444444444445555444 4666554433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=3.5e-11  Score=120.45  Aligned_cols=320  Identities=17%  Similarity=0.200  Sum_probs=201.1

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      ..++..++|++|+++|.+. +..++|++..+..                                             .+
T Consensus        35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~---------------------------------------------~~   68 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK---------------------------------------------VV   68 (566)
T ss_pred             CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCc---------------------------------------------EE
Confidence            3478889999998888765 4569999887631                                             11


Q ss_pred             eeeccCccCeEEEEEcCCC-eEEE-----EeCC-----CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEe
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLS-----CSMD-----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGS  347 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s-----~s~d-----g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s  347 (645)
                      ....  ...++++.|+|-+ +|.+     ...+     -.+.+|+++++.....+.  .... ++..|++ |+.+.+- -
T Consensus        69 lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~-dEsl~ar-l  143 (566)
T KOG2315|consen   69 LCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSI-DESLAAR-L  143 (566)
T ss_pred             EEec--cceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-ccccccc-chhhhhh-h
Confidence            1111  1267788888866 4443     1222     347799999865555553  2222 6889998 6554332 2


Q ss_pred             CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC--EEEE-----EecCCeEEEEEecCCc--eeeeEEeeccccccCC
Q 006424          348 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK--GFIV-----GSITGTCHFYKASGND--LKLEKVDFHDRKKTSG  418 (645)
Q Consensus       348 ~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~--~l~~-----g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~  418 (645)
                      ..+.+++|++.+.+.....-+...++.+.++|.+.  .+|+     ++.-+.+++|......  .....-.+-      .
T Consensus       144 v~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF------k  217 (566)
T KOG2315|consen  144 VSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF------K  217 (566)
T ss_pred             hcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc------c
Confidence            35779999998866666556678899999999643  4443     3445689999876221  111111111      1


Q ss_pred             CCeEEEEEcCCCCcEEEEEECC-----------CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEE--eCCccE
Q 006424          419 NKITGIQFSRDESQRIMITSED-----------SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI--GDDCRV  485 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~d-----------g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~--s~dg~I  485 (645)
                      ..-..+.|++.|..+|+.++.|           .+++++++......... ...++|.++.|+|+++-++++  -.-.++
T Consensus       218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkv  296 (566)
T KOG2315|consen  218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKV  296 (566)
T ss_pred             cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceE
Confidence            2234578888876666655443           36777777633344443 258899999999999776654  356789


Q ss_pred             EEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCcccc
Q 006424          486 YVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFS  565 (645)
Q Consensus       486 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs  565 (645)
                      .|||++..             .+.-.+.|+...+-|+|.|.+++.++-+.+                             
T Consensus       297 tifnlr~~-------------~v~df~egpRN~~~fnp~g~ii~lAGFGNL-----------------------------  334 (566)
T KOG2315|consen  297 TIFNLRGK-------------PVFDFPEGPRNTAFFNPHGNIILLAGFGNL-----------------------------  334 (566)
T ss_pred             EEEcCCCC-------------EeEeCCCCCccceEECCCCCEEEEeecCCC-----------------------------
Confidence            99998754             112235677778888888888776665544                             


Q ss_pred             CCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecC------CCeEeEEEec
Q 006424          566 NDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGC------DGMIKTFHNY  639 (645)
Q Consensus       566 ~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~------Dg~Iriw~~~  639 (645)
                                  .|.|.+||..+.+           +.............++| ||++|+||..      |+-|+||+.+
T Consensus       335 ------------~G~mEvwDv~n~K-----------~i~~~~a~~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  335 ------------PGDMEVWDVPNRK-----------LIAKFKAANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             ------------CCceEEEeccchh-----------hccccccCCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEec
Confidence                        3456677766651           11111111111123334 7888877764      6889999999


Q ss_pred             Ccccc
Q 006424          640 GLPIR  644 (645)
Q Consensus       640 g~~~~  644 (645)
                      |-+++
T Consensus       391 G~~l~  395 (566)
T KOG2315|consen  391 GSLLH  395 (566)
T ss_pred             Cceee
Confidence            98775

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.45  E-value=8.9e-12  Score=115.58  Aligned_cols=113  Identities=19%  Similarity=0.428  Sum_probs=91.4

Q ss_pred             CccCeEEEEEcCCC-eE--EEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEeCCC
Q 006424          286 HKGDVLDLAWSNSN-YL--LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE  359 (645)
Q Consensus       286 h~~~V~~l~~s~~~-~l--~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d---g~i~vwd~~~  359 (645)
                      ..++|.+++|+|++ .+  ++|..++.|.+||++ ++.+..+. ...+..+.|+| +|+++++++.+   |.|.+||.++
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~  134 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK  134 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence            34579999999987 54  345567899999997 66666665 45678999999 99999998754   6699999998


Q ss_pred             CcEEEeeccCCCeEEEEEccCCCEEEEEec------CCeEEEEEecCCc
Q 006424          360 KRVVDWADVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGND  402 (645)
Q Consensus       360 ~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~------dg~i~iwd~~~~~  402 (645)
                      .+.+....+.. ++.++|+|+|++++++..      |+.++||+..+..
T Consensus       135 ~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~  182 (194)
T PF08662_consen  135 KKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL  182 (194)
T ss_pred             CEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence            88877666654 789999999999999874      6888999987654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=1.2e-11  Score=130.84  Aligned_cols=220  Identities=15%  Similarity=0.158  Sum_probs=145.4

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      +.+..|...+.+.+|+|||+.|+.++.+   ..|.+||+.++..                                    
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~------------------------------------  240 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR------------------------------------  240 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE------------------------------------
Confidence            4466677889999999999999988743   4699999876321                                    


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCC-eE-EEEeCCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l-~s~s~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                                ..+..+.+...+..|+|+| .+ ++.+.+|  .|++||+.+++......+.......+|+| +++.|+.+
T Consensus       241 ----------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~  309 (433)
T PRK04922        241 ----------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFT  309 (433)
T ss_pred             ----------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEE
Confidence                      2222333445578999998 44 4556665  59999999887655545555567789999 89888777


Q ss_pred             eC-CCc--EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC---eEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          347 SI-DGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       347 s~-dg~--i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      +. +|.  |+++|+.+++...+..........+|+|+|++++..+.++   .|.+||+.+.....  +. ..      ..
T Consensus       310 sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~--Lt-~~------~~  380 (433)
T PRK04922        310 SDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT--LT-PG------SL  380 (433)
T ss_pred             ECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE--CC-CC------CC
Confidence            64 444  7777887777665544444556789999999998876543   68999987765431  11 11      12


Q ss_pred             eEEEEEcCCCCcEEEEEEC-C--CeEEEEECCcceeeEeecCCCCCeEEEEEec
Q 006424          421 ITGIQFSRDESQRIMITSE-D--SKLRILDGVDVIHKFKGLPKSGSQMSASFTT  471 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~-d--g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp  471 (645)
                      .....|+|+| ++++..+. .  +.|.+++..... ......+.+.+...+|+|
T Consensus       381 ~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~~-~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        381 DESPSFAPNG-SMVLYATREGGRGVLAAVSTDGRV-RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCCceECCCC-CEEEEEEecCCceEEEEEECCCCc-eEEcccCCCCCCCCccCC
Confidence            3456899998 55554444 2  457777765322 111222345566677766

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.44  E-value=1.8e-11  Score=115.11  Aligned_cols=264  Identities=17%  Similarity=0.296  Sum_probs=170.1

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      ..+-|.++.|...|.+||||..+|.|.++.-......                 ...+...-++          ...+..
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-----------------ey~~~t~fqs----------hepEFD   76 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-----------------EYNFQTEFQS----------HEPEFD   76 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeeccccccc-----------------ceeeeeeeec----------cCcccc
Confidence            3456899999999999999999999999975542110                 0000000000          000001


Q ss_pred             CceeeccCccCeEEEEEcCCC---eEEEEeCCCcEEEEecCCCe-----------------------------------E
Q 006424          279 PLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQ-----------------------------------C  320 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~---~l~s~s~dg~I~iwd~~~~~-----------------------------------~  320 (645)
                      -+..+. -...|..+.|.+++   .++..+.|.+|++|.+....                                   +
T Consensus        77 YLkSle-ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~p  155 (433)
T KOG1354|consen   77 YLKSLE-IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASP  155 (433)
T ss_pred             hhhhhh-hhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeee
Confidence            111111 34578889998763   67788899999999874321                                   1


Q ss_pred             EEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-Cc---EEEee-----ccCCCeEEEEEcc-CCCEEEEEe
Q 006424          321 LNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KR---VVDWA-----DVRDVISAICYIP-DGKGFIVGS  388 (645)
Q Consensus       321 ~~~~--~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~---~~~~~-----~~~~~v~~l~~sp-~g~~l~~g~  388 (645)
                      .+.+  .|.-.|+++.++. |...++++. |=.|.+|++.- .+   ++-+.     ....-|++..|+| ..+.++-.+
T Consensus       156 rRv~aNaHtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  156 RRVYANAHTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             eeeccccceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence            1112  2777899999998 787787764 78899999863 22   22222     2335688999999 456888889


Q ss_pred             cCCeEEEEEecCCceeeeE---Eeeccc------cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC---cceeeEe
Q 006424          389 ITGTCHFYKASGNDLKLEK---VDFHDR------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV---DVIHKFK  456 (645)
Q Consensus       389 ~dg~i~iwd~~~~~~~~~~---~~~~~~------~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~---~~~~~~~  456 (645)
                      ..|+|++-|++...+--..   +.....      ....-..|..+.|+++| +++++-.. -+|++||+.   .+..++.
T Consensus       234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~~pv~t~~  311 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEAKPVETYP  311 (433)
T ss_pred             CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccccCCcceEEe
Confidence            9999999999843321110   000000      00112568889999998 67765433 689999975   3455554


Q ss_pred             ecCC----------CCC---eEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          457 GLPK----------SGS---QMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       457 ~~~~----------~~~---i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      .+..          ...   -..++|+-++.+++||+.....++++...+.
T Consensus       312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  312 VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence            4321          112   2457899999999999999999999977663

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.40  E-value=3.1e-11  Score=111.99  Aligned_cols=149  Identities=14%  Similarity=0.289  Sum_probs=102.6

Q ss_pred             EEEEEeeCCCCEEEEEeC----------CCcEEEEeC--CCCcEEEe-eccCCCeEEEEEccCCCEEEEE--ecCCeEEE
Q 006424          331 TCVQFNPIDDNYFISGSI----------DGKVRIWGV--CEKRVVDW-ADVRDVISAICYIPDGKGFIVG--SITGTCHF  395 (645)
Q Consensus       331 ~~l~~~p~~~~~l~s~s~----------dg~i~vwd~--~~~~~~~~-~~~~~~v~~l~~sp~g~~l~~g--~~dg~i~i  395 (645)
                      ..+.|+| +|++|++-..          -+...+|.+  .......+ ....++|.+++|+|+|+.|++.  ..++.+.+
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            3567888 7766554332          123445544  33333333 2234569999999999987664  45779999


Q ss_pred             EEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC---CeEEEEECCcceeeEeecCCCCCeEEEEEecC
Q 006424          396 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTT  472 (645)
Q Consensus       396 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~  472 (645)
                      ||++....    ..+.      ...+..+.|+|+| +++++++.+   |.|.+||.++.......  ....++.++|+||
T Consensus        88 yd~~~~~i----~~~~------~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~~~t~~~WsPd  154 (194)
T PF08662_consen   88 YDVKGKKI----FSFG------TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHSDATDVEWSPD  154 (194)
T ss_pred             EcCcccEe----Eeec------CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeecc--ccCcEEEEEEcCC
Confidence            99972221    1122      2567889999998 788877643   67999999865554443  3345789999999


Q ss_pred             CCEEEEEeC------CccEEEEeCCCC
Q 006424          473 GKHIISIGD------DCRVYVWNYDEL  493 (645)
Q Consensus       473 ~~~l~t~s~------dg~I~iwd~~~~  493 (645)
                      |++|++++.      |..++||++...
T Consensus       155 Gr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  155 GRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CCEEEEEEeccceeccccEEEEEecCe
Confidence            999999874      788999999754

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.40  E-value=2.9e-11  Score=115.85  Aligned_cols=223  Identities=17%  Similarity=0.180  Sum_probs=160.8

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      ....+++|..++.. || .|++|-.+|.+.+|..+.+...                                        
T Consensus       101 ~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h----------------------------------------  138 (412)
T KOG3881|consen  101 VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH----------------------------------------  138 (412)
T ss_pred             cccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccc----------------------------------------
Confidence            44566777777765 33 7888899999999999864321                                        


Q ss_pred             cCCCceeeccCccCeEEEEEcCC--CeEEEEeCC--CcEEEEecCCCeEEEEe----------cCCCcEEEEEEeeCC--
Q 006424          276 EESPLQELHGHKGDVLDLAWSNS--NYLLSCSMD--KTVRMWQVGCNQCLNVF----------DHHNYVTCVQFNPID--  339 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~d--g~I~iwd~~~~~~~~~~----------~~~~~v~~l~~~p~~--  339 (645)
                       ..++..+..+ ..+..+.-++.  +.+++|+..  ..+.+||++..+.+..-          ..+-+++.+.|-+ .  
T Consensus       139 -ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~  215 (412)
T KOG3881|consen  139 -SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSP  215 (412)
T ss_pred             -cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC-CCC
Confidence             1223333323 33444544543  367779998  88999999887555432          1344678899988 5  


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCc--EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424          340 DNYFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  417 (645)
Q Consensus       340 ~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  417 (645)
                      ...|++++.-+.+++||.+.++  +..+.-...+++++...|+|+.+++|..-|.+..||++........+      ...
T Consensus       216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~------kg~  289 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL------KGI  289 (412)
T ss_pred             CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc------CCc
Confidence            6789999999999999998754  34566668899999999999999999999999999999887643322      223


Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEec
Q 006424          418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT  471 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp  471 (645)
                      .+.|+++..+|.+ .++++++-|..|||+|+.+........ -...++++-+.+
T Consensus       290 tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~  341 (412)
T KOG3881|consen  290 TGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD  341 (412)
T ss_pred             cCCcceEEEcCCC-ceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence            4789999999997 799999999999999987632222221 233455555544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.38  E-value=2.1e-10  Score=117.30  Aligned_cols=292  Identities=14%  Similarity=0.077  Sum_probs=161.4

Q ss_pred             CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCcEEE
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRI  354 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~dg~i~v  354 (645)
                      .+.+..+......-..+.|+||+ +++.++.||.|.++|+.+++.+..+.......++++++ ++++++++. ..+.+.+
T Consensus        26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~-DG~~~~v~n~~~~~v~v  104 (369)
T PF02239_consen   26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP-DGKYVYVANYEPGTVSV  104 (369)
T ss_dssp             -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE---TTTEEEEEEEETTEEEE
T ss_pred             CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC-CCCEEEEEecCCCceeE
Confidence            34455665443333457789987 78888999999999999999999998888889999999 999888765 5899999


Q ss_pred             EeCCCCcEEEeec--------cCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          355 WGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       355 wd~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      +|.++.+.+....        ....+.++..+|....+++.-. .+.|-+.|........... ...     ........
T Consensus       105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-i~~-----g~~~~D~~  178 (369)
T PF02239_consen  105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-IKV-----GRFPHDGG  178 (369)
T ss_dssp             EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE-EE-------TTEEEEE
T ss_pred             eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee-ecc-----cccccccc
Confidence            9999988766332        2346778888888886666655 4788888876653322111 111     24567889


Q ss_pred             EcCCCCcEEEEEECCCeEEEEECCcceeeEee----cCCCCCeEEEEEecCC-CEEEEEeC---------CccEEEEeCC
Q 006424          426 FSRDESQRIMITSEDSKLRILDGVDVIHKFKG----LPKSGSQMSASFTTTG-KHIISIGD---------DCRVYVWNYD  491 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~----~~~~~~i~~v~~sp~~-~~l~t~s~---------dg~I~iwd~~  491 (645)
                      |+|++..++++...++.|-++|..+.......    ..|..++..+ .+|.. ...++++.         ...+.+||..
T Consensus       179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~  257 (369)
T PF02239_consen  179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY  257 (369)
T ss_dssp             E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred             cCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhh
Confidence            99998445555666789999998754433322    2233344443 23432 22222221         1223333333


Q ss_pred             CCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcccccc---CCCCccccCccccccccC--CccC-CCCccccCcccc
Q 006424          492 ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL---CSSSLRDCSQKWDNLETA--PWIR-DSERFSLGSWFS  565 (645)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~---~~~~~~~~~~~w~~~~~~--~~~~-~~~~~~~~~~fs  565 (645)
                      +.+.         ..  ...-.|.-+.+..+|++.++|.-   ..+  ...+.+.+.....  ..+. .....+..+.|+
T Consensus       258 ~wkv---------v~--~I~~~G~glFi~thP~s~~vwvd~~~~~~--~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~  324 (369)
T PF02239_consen  258 AWKV---------VK--TIPTQGGGLFIKTHPDSRYVWVDTFLNPD--ADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN  324 (369)
T ss_dssp             BTSE---------EE--EEE-SSSS--EE--TT-SEEEEE-TT-SS--HT-EEEEECCGTEEEE-HHHHHT--EEEEEE-
T ss_pred             cCeE---------EE--EEECCCCcceeecCCCCccEEeeccCCCC--CceEEEEECcCcceeEEEeccCCCcEeccEEC
Confidence            3221         11  11112222566667777777744   222  2233333332211  1111 111237788999


Q ss_pred             CCCCCCcCCCCCCC-cCCCCCCccC
Q 006424          566 NDGPCRGSATWPAE-KLPLWDVTID  589 (645)
Q Consensus       566 ~dg~~l~s~s~~d~-~i~iWd~~~~  589 (645)
                      +||+.+-.+.|..+ .|.++|..+.
T Consensus       325 ~dG~~v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  325 PDGKEVWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred             CCCCEEEEEEecCCCEEEEEECCCc
Confidence            99996655666444 7999998887

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=4.4e-11  Score=122.30  Aligned_cols=249  Identities=17%  Similarity=0.261  Sum_probs=176.1

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424          200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  279 (645)
Q Consensus       200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (645)
                      .....|+.|+.+..|+|+|+.||.+++-.+.+...       +......+...                       .-..
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~-------d~~~~glaa~s-----------------------nLsm   63 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTT-------DLNKSGLAAAS-----------------------NLSM   63 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCC-------ccccccccccc-----------------------ccch
Confidence            34578999999999999999999999998876321       11000000000                       1233


Q ss_pred             ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      -+++.||.+.|.-+.|+.+. .|-|...+|.|.+|-+-.|.-....   ...+.|.+++|+. +|..+...-.||.|.+=
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVG  142 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVG  142 (1189)
T ss_pred             hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEE
Confidence            47889999999999999765 7889999999999998777654433   3567899999999 99999999999999988


Q ss_pred             eCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee----EEeeccccccCCCCeEEEEEc----
Q 006424          356 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFS----  427 (645)
Q Consensus       356 d~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~i~~i~~s----  427 (645)
                      .+.+.++....-.......+.|++|.+.++.+-..|.+++||..+.-....    .+...+.....+..|..+.|.    
T Consensus       143 svdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~  222 (1189)
T KOG2041|consen  143 SVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY  222 (1189)
T ss_pred             eeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence            887776654322233355788999999999999999999999875432111    122222222223446666664    


Q ss_pred             ----CCCCcEEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 006424          428 ----RDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDD  482 (645)
Q Consensus       428 ----~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d  482 (645)
                          |+. ..++++...|.+.|..-.+ .......  ....+.++.|+++|..||.+|.|
T Consensus       223 ~~v~pdr-P~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  223 QPVPPDR-PRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             ccCCCCC-CEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCc
Confidence                343 5789999999998876432 2222222  23578899999999999999865

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.37  E-value=3.2e-10  Score=120.13  Aligned_cols=200  Identities=19%  Similarity=0.261  Sum_probs=136.1

Q ss_pred             ceeeccCccCeEEEEEcCCC-eEEEEeCC---CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEE-EeCCC--cE
Q 006424          280 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDG--KV  352 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s-~s~dg--~i  352 (645)
                      .+.+..+...+...+|+|++ +|+.++.+   ..|++||+.+++......+...+.+++|+| +++.|+. .+.++  .|
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i  260 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDI  260 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccE
Confidence            34455566778899999998 66665543   479999999887655555666677899999 8876654 44444  59


Q ss_pred             EEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      ++||+.++....+..+........|+|+|+.|+..+. ++  .|+++|+.+....  .+...      ........|+|+
T Consensus       261 ~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~--~l~~~------~~~~~~~~~spd  332 (417)
T TIGR02800       261 YVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR--RLTFR------GGYNASPSWSPD  332 (417)
T ss_pred             EEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecC------CCCccCeEECCC
Confidence            9999998887777666655667899999998877654 33  5777777655432  22222      245667899999


Q ss_pred             CCcEEEEEECCC---eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCc---cEEEEeCC
Q 006424          430 ESQRIMITSEDS---KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYD  491 (645)
Q Consensus       430 g~~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg---~I~iwd~~  491 (645)
                      | .+++.++.++   .|.+||+.........  .........|+|+|++|+..+.++   .+++.+..
T Consensus       333 g-~~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       333 G-DLIAFVHREGGGFNIAVMDLDGGGERVLT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             C-CEEEEEEccCCceEEEEEeCCCCCeEEcc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            8 6777777665   7888887643222211  122334568999999988877654   45555544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.37  E-value=3.2e-10  Score=115.90  Aligned_cols=322  Identities=14%  Similarity=0.080  Sum_probs=179.5

Q ss_pred             EEEEeCCCcEEEEecCCCeEEEEecCCCcE-EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc
Q 006424          301 LLSCSMDKTVRMWQVGCNQCLNVFDHHNYV-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP  379 (645)
Q Consensus       301 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v-~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp  379 (645)
                      +++-..++.|.+.|..+.+.+..+.....+ ..+.|+| +++++++++.||.|.++|+.+.+.+..........++++++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~   87 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP   87 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence            456667899999999999999999754444 4567899 99999999999999999999999988777778889999999


Q ss_pred             CCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccc-cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee-eEe
Q 006424          380 DGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDR-KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFK  456 (645)
Q Consensus       380 ~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-~~~  456 (645)
                      ||+++++++ ..+.+.++|.++.+.... +..... ......++..+..+|....++++.-+.+.|.+.|...... ...
T Consensus        88 DG~~~~v~n~~~~~v~v~D~~tle~v~~-I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~  166 (369)
T PF02239_consen   88 DGKYVYVANYEPGTVSVIDAETLEPVKT-IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT  166 (369)
T ss_dssp             TTTEEEEEEEETTEEEEEETTT--EEEE-EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred             CCCEEEEEecCCCceeEeccccccceee-cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence            999999875 689999999988765432 222211 1113457788888888644455555558999988664311 112


Q ss_pred             ecCCCCCeEEEEEecCCCEEEEE-eCCccEEEEeCCCCCcCCCcc---cCCcce-eeeeecCC-cEEEEecCCCCccc-c
Q 006424          457 GLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFPSSKQ---KNSVRS-CEHFFSEG-VSVAVQWPGIGTEQ-K  529 (645)
Q Consensus       457 ~~~~~~~i~~v~~sp~~~~l~t~-s~dg~I~iwd~~~~~~~~~~~---~~~~~~-~~~~~~~g-~~~~v~~s~~~~~l-~  529 (645)
                      ............|+|+++|++.+ ..+..|-++|..+.+......   ...... ....|+.. .+.+..  ..+... .
T Consensus       167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~--~~~~~~~~  244 (369)
T PF02239_consen  167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS--GLGYFAIP  244 (369)
T ss_dssp             EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE--BSSSSEEE
T ss_pred             eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec--cccceecc
Confidence            22234567789999999988765 456789999988775322211   111111 11234432 333332  222222 2


Q ss_pred             ccCCCCcc-ccCccccccccCCccCCCCccccCccccCCCCCCcCC---CCCCCcCCCCCCccCCCCCcCChhhhHhhhh
Q 006424          530 SLCSSSLR-DCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSA---TWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQ  605 (645)
Q Consensus       530 ~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~---s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~  605 (645)
                      ..+.+... .....|......+.   .+.. ..+.-+||++++...   ......|.++|..+.+.. .      . ...
T Consensus       245 ~ig~~~v~v~d~~~wkvv~~I~~---~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~-~------~-i~~  312 (369)
T PF02239_consen  245 LIGTDPVSVHDDYAWKVVKTIPT---QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV-K------T-ITP  312 (369)
T ss_dssp             EEE--TTT-STTTBTSEEEEEE----SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE-E--------HHH
T ss_pred             cccCCccccchhhcCeEEEEEEC---CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCccee-E------E-Eec
Confidence            33443332 22344544433322   2222 455668999977554   332568999998886200 0      0 001


Q ss_pred             hccCCCCCccCCCCcce-EEEEecCCC-eEeEEEec
Q 006424          606 CLNNVDDVRAISATWGL-VIVTAGCDG-MIKTFHNY  639 (645)
Q Consensus       606 ~~~~~~~~~~~~~~d~~-~ivt~s~Dg-~Iriw~~~  639 (645)
                      .......-..|+. ||. +.+|.-.++ .|.+||..
T Consensus       313 ~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~  347 (369)
T PF02239_consen  313 GPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAK  347 (369)
T ss_dssp             HHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETT
T ss_pred             cCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECC
Confidence            1111111134555 565 445555555 89999854

...

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.36  E-value=1.9e-11  Score=121.40  Aligned_cols=163  Identities=20%  Similarity=0.405  Sum_probs=115.7

Q ss_pred             ccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          199 HKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       199 H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .+..|+|+.|-|.+. .++.+-.+|.+.+||......   ...+.  .......+...+....            .....
T Consensus       218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~---~t~p~--~~~~k~~~~f~i~t~k------------sk~~r  280 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG---ATAPS--YQALKDGDQFAILTSK------------SKKTR  280 (636)
T ss_pred             cccceEEEEEEeCCCceEEEEEecCceEEeecccccc---CCCCc--ccccCCCCeeEEeeee------------ccccC
Confidence            347899999999654 566667899999998742100   00000  0000000000000000            00012


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      .++..+.--.+.|...+|+||| +|++.+.||.++|+|..+.+.+..+. --+...|++|+| |++++++|++|..|.||
T Consensus       281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVw  359 (636)
T KOG2394|consen  281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVW  359 (636)
T ss_pred             CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEE
Confidence            4445555456689999999998 99999999999999999887776664 445789999999 99999999999999999


Q ss_pred             eCCCCcEEEe-eccCCCeEEEEEcc
Q 006424          356 GVCEKRVVDW-ADVRDVISAICYIP  379 (645)
Q Consensus       356 d~~~~~~~~~-~~~~~~v~~l~~sp  379 (645)
                      .+..++++.. .+|+++|+.++|.|
T Consensus       360 Sf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  360 SFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EeccceEEEeccccccceeeEeecc
Confidence            9999998874 78999999999998

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=3.6e-10  Score=119.56  Aligned_cols=202  Identities=17%  Similarity=0.182  Sum_probs=127.3

Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeC-CC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEE-EeCCCc--EE
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSM-DK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGK--VR  353 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~-dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s-~s~dg~--i~  353 (645)
                      +.+..+...+.+..|+|+| .|+..+. ++  .|.+||+.+++...............|+| +++.|+. .+.++.  |+
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEE
Confidence            3445567788899999998 6665543 33  58888998877544333334445789999 8887664 555664  88


Q ss_pred             EEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          354 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       354 vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      ++|+.+++...+..+.......+|+|||+.++..+. +|  .|+++|+.+...  ..+....      .......|+|+|
T Consensus       290 ~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~Lt~~g------~~~~~~~~SpDG  361 (448)
T PRK04792        290 VVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--SRLTFEG------EQNLGGSITPDG  361 (448)
T ss_pred             EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEEecCC------CCCcCeeECCCC
Confidence            889998888777766666788999999998877654 44  455566655543  2222222      223456899998


Q ss_pred             CcEEEEEECCC--eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC-c--cEEEEeCCCC
Q 006424          431 SQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-C--RVYVWNYDEL  493 (645)
Q Consensus       431 ~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d-g--~I~iwd~~~~  493 (645)
                      ..++++...++  .|.++|+.........  .........|+|||++|+..+.+ |  .+++++.+..
T Consensus       362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~lt--~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~  427 (448)
T PRK04792        362 RSMIMVNRTNGKFNIARQDLETGAMQVLT--STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR  427 (448)
T ss_pred             CEEEEEEecCCceEEEEEECCCCCeEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            44444444445  4555676543222111  11122345799999988776643 3  3677776543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=9.1e-11  Score=117.51  Aligned_cols=207  Identities=9%  Similarity=0.087  Sum_probs=146.8

Q ss_pred             cCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe--------------------------------------
Q 006424          285 GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF--------------------------------------  324 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~--------------------------------------  324 (645)
                      .|...-+.+..+|||  .+++|.+.-.|++||+..-.....-                                      
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            477888999999998  5778889999999998643211100                                      


Q ss_pred             --cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC
Q 006424          325 --DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  401 (645)
Q Consensus       325 --~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~  401 (645)
                        ..+..-..++++.....++ +++....|+-+++..|+.+.... ..+.++++..++-..+|++|+.+|.|.+||.+..
T Consensus       129 ~~RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eeecCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence              0011123344443233444 44445678889999999877444 4488999999999999999999999999999876


Q ss_pred             ceeeeEEeeccccccCC-----CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeE-eecCCCCCeEEEEEecC--C
Q 006424          402 DLKLEKVDFHDRKKTSG-----NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFTTT--G  473 (645)
Q Consensus       402 ~~~~~~~~~~~~~~~~~-----~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~i~~v~~sp~--~  473 (645)
                      ... ..+........+.     ..|+++.|+.+| -.+++|+.+|.|.|||++.....+ ..+....+|..+.|-+.  +
T Consensus       208 srv-~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q  285 (703)
T KOG2321|consen  208 SRV-GTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ  285 (703)
T ss_pred             hhh-eeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence            543 2222222222222     349999999997 899999999999999998544433 34556778999999765  4


Q ss_pred             CEEEEEeCCccEEEEeCCCCCc
Q 006424          474 KHIISIGDDCRVYVWNYDELCF  495 (645)
Q Consensus       474 ~~l~t~s~dg~I~iwd~~~~~~  495 (645)
                      +.+++. +...++|||-.+++.
T Consensus       286 ~~v~S~-Dk~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  286 NKVVSM-DKRILKIWDECTGKP  306 (703)
T ss_pred             ceEEec-chHHhhhcccccCCc
Confidence            556554 567899999988853

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.34  E-value=1.6e-10  Score=122.35  Aligned_cols=198  Identities=16%  Similarity=0.152  Sum_probs=135.6

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      +.+..+...+.+..|+|||++|+.++.+   ..|++||+.++.                                     
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-------------------------------------  225 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-------------------------------------  225 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-------------------------------------
Confidence            4455677789999999999999987654   479999987632                                     


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCC-eEE-EEeCCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~-s~s~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                               ...+..+.+.+.+++|+|++ .|+ +.+.++  .|++||+.++.......+........|+| +++.|+.+
T Consensus       226 ---------~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~  295 (417)
T TIGR02800       226 ---------REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFT  295 (417)
T ss_pred             ---------EEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEE
Confidence                     12223344556678999997 454 555444  58889998876655545555556778999 88887766


Q ss_pred             eCC-C--cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC---eEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          347 SID-G--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       347 s~d-g--~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      +.. +  .|+++|+.+++...+..+........|+|+|++++.++.++   .|.+||+.+.....  +  ...     ..
T Consensus       296 s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~--l--~~~-----~~  366 (417)
T TIGR02800       296 SDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV--L--TDT-----GL  366 (417)
T ss_pred             ECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE--c--cCC-----CC
Confidence            543 3  58888988887776666666778899999999999988776   78888887644321  1  111     12


Q ss_pred             eEEEEEcCCCCcEEEEEECCC---eEEEEEC
Q 006424          421 ITGIQFSRDESQRIMITSEDS---KLRILDG  448 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg---~I~iwd~  448 (645)
                      .....|+|+| ..|+..+.++   .+++.+.
T Consensus       367 ~~~p~~spdg-~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       367 DESPSFAPNG-RMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             CCCceECCCC-CEEEEEEeCCCcEEEEEEEC
Confidence            3446899998 5555554443   3455553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=4.2e-10  Score=119.46  Aligned_cols=206  Identities=13%  Similarity=0.165  Sum_probs=136.3

Q ss_pred             cCCCceeeccCccCeEEEEEcCCC-eEEEEeCC---CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEE-EEeCCC
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDG  350 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~-s~s~dg  350 (645)
                      ++...+.+..+...+....|+|+| .|+..+.+   ..|.+||+.+++..........+....|+| +++.|+ +.+.+|
T Consensus       187 ~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g  265 (430)
T PRK00178        187 DGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDG  265 (430)
T ss_pred             CCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCC
Confidence            344456666677889999999998 67665543   368999999887655444445566789999 888776 444454


Q ss_pred             --cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          351 --KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       351 --~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                        .|++||+.++....+..+........|+|||+.++..+. +|  .|+++++.+....  .+....      .......
T Consensus       266 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~--~lt~~~------~~~~~~~  337 (430)
T PRK00178        266 NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE--RVTFVG------NYNARPR  337 (430)
T ss_pred             CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecCC------CCccceE
Confidence              588889999888777666666778899999998876654 33  5666777655432  222221      2234578


Q ss_pred             EcCCCCcEEEEEEC-CC--eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC---ccEEEEeCCCC
Q 006424          426 FSRDESQRIMITSE-DS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDEL  493 (645)
Q Consensus       426 ~s~~g~~~l~~~s~-dg--~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d---g~I~iwd~~~~  493 (645)
                      |+|+| ..++..+. ++  .|.++|+.........  .........|+|||++++..+.+   ..|++++++..
T Consensus       338 ~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        338 LSADG-KTLVMVHRQDGNFHVAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             ECCCC-CEEEEEEccCCceEEEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            99998 55555543 33  5788887643222211  11222356899999999877653   35677777543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.32  E-value=1.9e-08  Score=102.98  Aligned_cols=250  Identities=16%  Similarity=0.174  Sum_probs=157.8

Q ss_pred             CcEEEEEECCCCCEEEEEeC----CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          201 GCIWTLKFSPDGRYLASGGE----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      ..-..++++|++++|.++..    +|.|..|++......                                         
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~-----------------------------------------   75 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT-----------------------------------------   75 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE-----------------------------------------
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce-----------------------------------------
Confidence            34567889999999988876    568888887652000                                         


Q ss_pred             CCCceeeccCccCeEEEEEcCCC-eEEEEe-CCCcEEEEecCC-CeEEEE---ec-----------CCCcEEEEEEeeCC
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGC-NQCLNV---FD-----------HHNYVTCVQFNPID  339 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s-~dg~I~iwd~~~-~~~~~~---~~-----------~~~~v~~l~~~p~~  339 (645)
                      -..+............++++|++ +|+++. .+|.|.++++.. +.....   +.           ......++.|+| +
T Consensus        76 L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-d  154 (345)
T PF10282_consen   76 LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-D  154 (345)
T ss_dssp             EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-T
T ss_pred             eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-C
Confidence            01122222233445578888887 666665 489999999976 443322   21           234578999999 8


Q ss_pred             CCEEEEEeC-CCcEEEEeCCCCc--EEE----eeccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCCceeeeE---E
Q 006424          340 DNYFISGSI-DGKVRIWGVCEKR--VVD----WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEK---V  408 (645)
Q Consensus       340 ~~~l~s~s~-dg~i~vwd~~~~~--~~~----~~~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~~---~  408 (645)
                      ++++++... ...|.+|++....  +..    ........+.+.|+|+++++++..+ ++.|.+|++.........   +
T Consensus       155 g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~  234 (345)
T PF10282_consen  155 GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI  234 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence            888877654 3579999987654  322    2345667899999999998877654 678999999832222221   1


Q ss_pred             eeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc---ceeeEee-cCCCCCeEEEEEecCCCEEEEEe-CCc
Q 006424          409 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKG-LPKSGSQMSASFTTTGKHIISIG-DDC  483 (645)
Q Consensus       409 ~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s-~dg  483 (645)
                      ...............+.++|+|..++++....+.|.+|++..   ....... .........+.++|+|++|+++. .++
T Consensus       235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~  314 (345)
T PF10282_consen  235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN  314 (345)
T ss_dssp             ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred             eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence            111111111236788999999844444445678999999731   1222221 21344579999999999999887 567


Q ss_pred             cEEEEeCCC
Q 006424          484 RVYVWNYDE  492 (645)
Q Consensus       484 ~I~iwd~~~  492 (645)
                      .|.+|+++.
T Consensus       315 ~v~vf~~d~  323 (345)
T PF10282_consen  315 TVSVFDIDP  323 (345)
T ss_dssp             EEEEEEEET
T ss_pred             eEEEEEEeC
Confidence            999998753

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=5.4e-10  Score=118.24  Aligned_cols=219  Identities=14%  Similarity=0.128  Sum_probs=134.9

Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          195 EIQAHKGCIWTLKFSPDGRYLASGGE-DG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspdg~~L~sgs~-Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      .+..+...+.+..|||||++|+..+. ++  .|.+||+.++..                                     
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-------------------------------------  254 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-------------------------------------  254 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-------------------------------------
Confidence            34456678889999999998887654 33  477888766321                                     


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEE-EEeCCCc--EEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  347 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~-s~s~dg~--I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s  347 (645)
                               ..+....+......|+|+| .|+ +.+.+|.  |.++|+.+++......+.......+|+| +++.++..+
T Consensus       255 ---------~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~s  324 (448)
T PRK04792        255 ---------EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFTS  324 (448)
T ss_pred             ---------EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEE
Confidence                     1111112233467899997 454 5566665  7778888877655545555667889999 888776655


Q ss_pred             C-CC--cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424          348 I-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKI  421 (645)
Q Consensus       348 ~-dg--~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  421 (645)
                      . ++  .|+++|+.+++...+..........+|+|||++++..+. ++  .|.++|+.+.....  +  ...     ...
T Consensus       325 ~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~--l--t~~-----~~d  395 (448)
T PRK04792        325 ERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV--L--TST-----RLD  395 (448)
T ss_pred             CCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE--c--cCC-----CCC
Confidence            4 33  477778888776655433333456789999998887655 34  45556766654321  1  111     111


Q ss_pred             EEEEEcCCCCcEEEEEECCCe--EEEEECCcc-eeeEeecCCCCCeEEEEEec
Q 006424          422 TGIQFSRDESQRIMITSEDSK--LRILDGVDV-IHKFKGLPKSGSQMSASFTT  471 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~dg~--I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp  471 (645)
                      ....|+|+|..++++...++.  +++++.... ...+.  .+.+.+...+|+|
T Consensus       396 ~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~--~~~g~~~~p~Wsp  446 (448)
T PRK04792        396 ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP--AGQGEVKSPAWSP  446 (448)
T ss_pred             CCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc--CCCCCcCCCccCC
Confidence            234799998555555555543  666675422 22222  2344566677776

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.29  E-value=3.6e-09  Score=99.11  Aligned_cols=163  Identities=15%  Similarity=0.218  Sum_probs=119.5

Q ss_pred             CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecC-CCeEEEEec---CCCcEEEEEEeeCCC-CEEEE-EeCCC
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVFD---HHNYVTCVQFNPIDD-NYFIS-GSIDG  350 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~---~~~~v~~l~~~p~~~-~~l~s-~s~dg  350 (645)
                      .+++.++. ...+|.++.+.++..++.  ..+.|+||... ..+.+..+.   .+..+.+  ..|..+ .+||. |-.-|
T Consensus        85 ~~~i~el~-f~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~--~~~~~~k~~LafPg~k~G  159 (346)
T KOG2111|consen   85 ERCIIELS-FNSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCS--LCPTSNKSLLAFPGFKTG  159 (346)
T ss_pred             CcEEEEEE-eccceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEe--ecCCCCceEEEcCCCccc
Confidence            34455554 678899999987653332  35789999886 445555553   3344433  344233 33443 33458


Q ss_pred             cEEEEeCCCCcE---EEeeccCCCeEEEEEccCCCEEEEEecCCe-EEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424          351 KVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       351 ~i~vwd~~~~~~---~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                      .|.|-|+...+.   ..+..|...|.|++.+-+|..+|+++..|+ |+|||..++....+...-.     ....|.+++|
T Consensus       160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-----d~A~iy~iaF  234 (346)
T KOG2111|consen  160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-----DRADIYCIAF  234 (346)
T ss_pred             eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-----chheEEEEEe
Confidence            999999987655   778899999999999999999999999996 7899999988765522222     2378999999


Q ss_pred             cCCCCcEEEEEECCCeEEEEECCc
Q 006424          427 SRDESQRIMITSEDSKLRILDGVD  450 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~~  450 (645)
                      +|+. .+|+++|..|++.|+.++.
T Consensus       235 Sp~~-s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  235 SPNS-SWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CCCc-cEEEEEcCCCeEEEEEeec
Confidence            9997 8999999999999998763

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=8.3e-10  Score=117.20  Aligned_cols=220  Identities=15%  Similarity=0.136  Sum_probs=138.8

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      +.+..|...+....|||||+.|+..+.+   ..|.+||+.++..                                    
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~------------------------------------  235 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR------------------------------------  235 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE------------------------------------
Confidence            4455677889999999999999877643   3588888876321                                    


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCC-eEE-EEeCCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~-s~s~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                                ..+....+.+....|+|+| .|+ +.+.+|  .|.+||+.+++......+........|+| +++.++..
T Consensus       236 ----------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~  304 (430)
T PRK00178        236 ----------EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFT  304 (430)
T ss_pred             ----------EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEE
Confidence                      1222223344568999997 554 555555  58888998887655445555566789999 88877666


Q ss_pred             eC-CC--cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC-C--eEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          347 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       347 s~-dg--~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      +. ++  .|+++|+.+++...+...........|+|+|+.++..+.+ +  .|.+||+.+.....  +. ..      ..
T Consensus       305 s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt-~~------~~  375 (430)
T PRK00178        305 SDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI--LT-DT------SL  375 (430)
T ss_pred             ECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE--cc-CC------CC
Confidence            54 33  5888888887765544333344567899999999887653 3  57788887765322  11 11      11


Q ss_pred             eEEEEEcCCCCcEEEEEECCC--eEEEEECCccee-eEeecCCCCCeEEEEEec
Q 006424          421 ITGIQFSRDESQRIMITSEDS--KLRILDGVDVIH-KFKGLPKSGSQMSASFTT  471 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg--~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp  471 (645)
                      .....|+|+|..++++...++  .+.+++...... .+.  .+.+.+...+|+|
T Consensus       376 ~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~--~~~g~~~~p~ws~  427 (430)
T PRK00178        376 DESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP--TAQGEVREPSWSP  427 (430)
T ss_pred             CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc--CCCCCcCCCccCC
Confidence            224589999854444444443  466666542222 222  2344556666765

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=2.7e-09  Score=107.23  Aligned_cols=263  Identities=14%  Similarity=0.209  Sum_probs=164.1

Q ss_pred             cEEEEEECCCCCEEEEE-----eCC-----CcEEEEEcCCCceeee-----------EecCCCCcccCCCCceEEecccC
Q 006424          202 CIWTLKFSPDGRYLASG-----GED-----GVVRIWHVTSVAASCK-----------SFTDDGGFGSNAKEGKIKFGKKK  260 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sg-----s~D-----g~I~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~  260 (645)
                      .++++.|||-|.||.|=     ..+     -.+.+|+++++.....           .|+.+..+.+......+.|....
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~  154 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLG  154 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecC
Confidence            58899999999998773     122     3477999988322111           11122222222222222222111


Q ss_pred             CCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC---eEEE-----EeCCCcEEEEecCCCeEEEEec----CCC
Q 006424          261 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLS-----CSMDKTVRMWQVGCNQCLNVFD----HHN  328 (645)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~l~s-----~s~dg~I~iwd~~~~~~~~~~~----~~~  328 (645)
                                      ......-.-|...|+.+.++|.+   .+++     .|.-..|+||.......-....    ...
T Consensus       155 ----------------~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka  218 (566)
T KOG2315|consen  155 ----------------SFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA  218 (566)
T ss_pred             ----------------CccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc
Confidence                            11111122357789999999863   3442     4556789999876322211111    122


Q ss_pred             cEEEEEEeeCCCCEEEEEeC--C---------CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEE--EecCCeEEE
Q 006424          329 YVTCVQFNPIDDNYFISGSI--D---------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV--GSITGTCHF  395 (645)
Q Consensus       329 ~v~~l~~~p~~~~~l~s~s~--d---------g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~--g~~dg~i~i  395 (645)
                      .-..+.|++....+|+.++.  |         .+++++++.+..+..-....++|+++.|+|+|+.+++  |.+-..+.|
T Consensus       219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti  298 (566)
T KOG2315|consen  219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTI  298 (566)
T ss_pred             ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence            22356787733334444432  2         4688888886566555666899999999999987766  566789999


Q ss_pred             EEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC---CeEEEEECCcceeeEeecCCCCCeEEEEEecC
Q 006424          396 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTT  472 (645)
Q Consensus       396 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~  472 (645)
                      ||++..-.    ..+.      .++-+++-|+|.| ++++.++.+   |.+-|||..+.......  .-..-+-+.|+||
T Consensus       299 fnlr~~~v----~df~------egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i~~~--~a~~tt~~eW~Pd  365 (566)
T KOG2315|consen  299 FNLRGKPV----FDFP------EGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLIAKF--KAANTTVFEWSPD  365 (566)
T ss_pred             EcCCCCEe----EeCC------CCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhhcccc--ccCCceEEEEcCC
Confidence            99986543    1122      2667889999998 677777665   89999998763333222  2334466799999


Q ss_pred             CCEEEEEeC------CccEEEEeCCCC
Q 006424          473 GKHIISIGD------DCRVYVWNYDEL  493 (645)
Q Consensus       473 ~~~l~t~s~------dg~I~iwd~~~~  493 (645)
                      |++++|++.      |+.++||++...
T Consensus       366 Ge~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  366 GEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             CcEEEEEeccccEEecCCeEEEEecCc
Confidence            999999874      788999999765

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.25  E-value=1.4e-09  Score=107.89  Aligned_cols=319  Identities=16%  Similarity=0.177  Sum_probs=201.5

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      -.-++..++|||.|.+|++....| |.+|.-....                                             
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~---------------------------------------------   64 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKA---------------------------------------------   64 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchh---------------------------------------------
Confidence            444788999999999999987776 8899866532                                             


Q ss_pred             CceeeccCccCeEEEEEcCCC-eEEEEeCC---------------CcEEEEecCCCeEEEEecCC-Cc--EE-EEEEeeC
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMD---------------KTVRMWQVGCNQCLNVFDHH-NY--VT-CVQFNPI  338 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~d---------------g~I~iwd~~~~~~~~~~~~~-~~--v~-~l~~~p~  338 (645)
                      .+..+.  ...|..+.|+|.+ +|.+=+..               ..+.+||+.+|..+..+... .+  .+ -+.|+- 
T Consensus        65 ~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-  141 (561)
T COG5354          65 KLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-  141 (561)
T ss_pred             heeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-
Confidence            122222  2457777778776 66654332               35999999999999988522 22  34 678887 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEE--eecc-CCCeEEEEEccCCC--EEEE-----EecCCeEEEEEecCCceeeeEE
Q 006424          339 DDNYFISGSIDGKVRIWGVCEKRVVD--WADV-RDVISAICYIPDGK--GFIV-----GSITGTCHFYKASGNDLKLEKV  408 (645)
Q Consensus       339 ~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~-~~~v~~l~~sp~g~--~l~~-----g~~dg~i~iwd~~~~~~~~~~~  408 (645)
                      +++++|-. ....++++++ ++....  +... ...+....|+|.|+  .|+.     ....+.+++|.+..+......-
T Consensus       142 ~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~  219 (561)
T COG5354         142 DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN  219 (561)
T ss_pred             cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee
Confidence            77776554 3457999997 443332  2222 35688888999643  3443     4567889999988554432221


Q ss_pred             eeccccccCCCCeEEEEEcCCCCcEEEEEE----------CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEE
Q 006424          409 DFHDRKKTSGNKITGIQFSRDESQRIMITS----------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS  478 (645)
Q Consensus       409 ~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s----------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t  478 (645)
                      -+.       ..-..+.|.+.|..+++-.-          ....++++++.+....... .-.++|...+|.|.++.+++
T Consensus       220 lfk-------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~v  291 (561)
T COG5354         220 LFK-------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAV  291 (561)
T ss_pred             eEe-------ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeE
Confidence            111       12245778888743332221          1256788887643222221 35789999999999888776


Q ss_pred             Ee--CCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCC
Q 006424          479 IG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSE  556 (645)
Q Consensus       479 ~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~  556 (645)
                      .+  .+..+.++|++..             .....|++.-....|+|.+.++...+-+.+...+.+|+............
T Consensus       292 i~g~~pa~~s~~~lr~N-------------l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~  358 (561)
T COG5354         292 ISGYMPASVSVFDLRGN-------------LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN  358 (561)
T ss_pred             Eecccccceeecccccc-------------eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee
Confidence            55  6788999998765             22233455555666777777777766666666677777655444331222


Q ss_pred             cc-ccCccccCCCCCCcCCC-----CCCCcCCCCCCccC
Q 006424          557 RF-SLGSWFSNDGPCRGSAT-----WPAEKLPLWDVTID  589 (645)
Q Consensus       557 ~~-~~~~~fs~dg~~l~s~s-----~~d~~i~iWd~~~~  589 (645)
                      .. ..-..|||||+++-.+.     ..|..|.+|++...
T Consensus       359 ~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         359 GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            22 22236899999554432     33568999998765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.24  E-value=1.4e-09  Score=111.29  Aligned_cols=282  Identities=15%  Similarity=0.150  Sum_probs=169.3

Q ss_pred             EEEEeCC----CcEEEEec--CCCeEE--EEecCCCcEEEEEEeeCCCCEEEEEeC----CCcEEEEeCCCC--cEEE--
Q 006424          301 LLSCSMD----KTVRMWQV--GCNQCL--NVFDHHNYVTCVQFNPIDDNYFISGSI----DGKVRIWGVCEK--RVVD--  364 (645)
Q Consensus       301 l~s~s~d----g~I~iwd~--~~~~~~--~~~~~~~~v~~l~~~p~~~~~l~s~s~----dg~i~vwd~~~~--~~~~--  364 (645)
                      ++.|+..    +.|.+|++  ++++..  ...........++++| ++++|+++..    ++.|..|++...  .+..  
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            4566666    68888888  455443  2333455677889999 8899988877    468999987653  4332  


Q ss_pred             -eeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEe---ecc----ccccCCCCeEEEEEcCCCCcEEE
Q 006424          365 -WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVD---FHD----RKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       365 -~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~---~~~----~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                       ..........++++|++++++++. .+|.+.++++...........   ..+    ..+.......++.++|+|..+++
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence             222456678899999999999887 589999999987533333211   111    11223456789999999844444


Q ss_pred             EEECCCeEEEEECCcce------eeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCCcCCCcccCCccee-
Q 006424          436 ITSEDSKLRILDGVDVI------HKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQKNSVRSC-  507 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~~~------~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~-  507 (645)
                      +.-....|.+|+.....      ..+. .........+.|+|++++++... .++.|.++++............ .... 
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~-~~~~~  238 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIK-VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT-ISTLP  238 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEE-CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-EESCE
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccc-cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE-eeecc
Confidence            44455789999976322      1222 23456678999999999887765 4788999999832211100000 0000 


Q ss_pred             eeeecCCcEEEEecCCCCccccccCCCCccccCccccc------cccCCccCCCCccccCccccCCCCCCcCCCCCCCcC
Q 006424          508 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN------LETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKL  581 (645)
Q Consensus       508 ~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~------~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i  581 (645)
                      ..+........+..+|||.+|+......-  .+.+++.      +.........+..-++++|+|||++++.+...++.|
T Consensus       239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~--sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v  316 (345)
T PF10282_consen  239 EGFTGENAPAEIAISPDGRFLYVSNRGSN--SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTV  316 (345)
T ss_dssp             TTSCSSSSEEEEEE-TTSSEEEEEECTTT--EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             ccccccCCceeEEEecCCCEEEEEeccCC--EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeE
Confidence            01111123557777888888775544321  1111111      111112222334467889999999998887768889


Q ss_pred             CCCCCc
Q 006424          582 PLWDVT  587 (645)
Q Consensus       582 ~iWd~~  587 (645)
                      .+|++.
T Consensus       317 ~vf~~d  322 (345)
T PF10282_consen  317 SVFDID  322 (345)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            988764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.21  E-value=1.7e-10  Score=108.63  Aligned_cols=235  Identities=15%  Similarity=0.318  Sum_probs=151.2

Q ss_pred             CcEEEEEECCCCC--EEEEEeCCCcEEEEEcCCCceeeeE--ecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          201 GCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKS--FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       201 ~~V~~l~fspdg~--~L~sgs~Dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      ..|+.+.|.++++  .++..+.|++|++|.+.........  ....+   .......+.        .++... ....++
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~---~~~~~~~lr--------~p~~~~-~~~~ve  152 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEG---PPGTITSLR--------LPVEGR-HDLEVE  152 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccC---CCCccceee--------ceeecc-ccceee
Confidence            4588899988765  6677788999999998763322100  00000   000000000        000000 001112


Q ss_pred             CCCceeec-cCccCeEEEEEcCCCeEEEEeCCCcEEEEecCC-CeEEEEe--c------CCCcEEEEEEeeCCCCEEEEE
Q 006424          277 ESPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVF--D------HHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       277 ~~~~~~l~-~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~-~~~~~~~--~------~~~~v~~l~~~p~~~~~l~s~  346 (645)
                      ..+.+.+. +|+..|++++++.|+..+..+.|-.|.+|+++- .+.....  .      ...-|++..|+|...+.++..
T Consensus       153 a~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS  232 (433)
T KOG1354|consen  153 ASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS  232 (433)
T ss_pred             eeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe
Confidence            23344443 799999999999888555556778999999863 2222221  1      334689999999888899999


Q ss_pred             eCCCcEEEEeCCCCcEEE-----------------eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424          347 SIDGKVRIWGVCEKRVVD-----------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD  409 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~-----------------~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~  409 (645)
                      +..|+|++-|++...+.-                 +.+.-..|..+.|+++|+++++-+. -+|++||+.....+.....
T Consensus       233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~  311 (433)
T KOG1354|consen  233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYP  311 (433)
T ss_pred             cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEe
Confidence            999999999998543221                 1122345888999999999987542 5899999977777777666


Q ss_pred             eccccccC------CCC---eEEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424          410 FHDRKKTS------GNK---ITGIQFSRDESQRIMITSEDSKLRILDGV  449 (645)
Q Consensus       410 ~~~~~~~~------~~~---i~~i~~s~~g~~~l~~~s~dg~I~iwd~~  449 (645)
                      ++......      ...   -..++|+.++ .++++|+..+.++++++.
T Consensus       312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~  359 (433)
T KOG1354|consen  312 VHEYLRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLA  359 (433)
T ss_pred             ehHhHHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCC
Confidence            65432110      111   2357888887 799999999999999955

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.18  E-value=1e-09  Score=117.81  Aligned_cols=184  Identities=13%  Similarity=0.172  Sum_probs=147.6

Q ss_pred             CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEE-----EEEEeeCCCCEEEEEeCCCcEEEEeCCC-CcEEEeeccCCCe
Q 006424          299 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT-----CVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWADVRDVI  372 (645)
Q Consensus       299 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~-----~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~v  372 (645)
                      ..++.++.+..+.+||...+.......+...+.     -+-+++ +.-++++|+.-+.|.+|+... .....+.+|.+.+
T Consensus       100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i  178 (967)
T KOG0974|consen  100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI  178 (967)
T ss_pred             ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence            478888999999999998887777776554322     223345 566899999999999999864 3344689999999


Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC-cc
Q 006424          373 SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DV  451 (645)
Q Consensus       373 ~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~  451 (645)
                      .++.++.||+++++.++|.++++|++.+.+...      ..--.|..++..++|.|+   .+++++.|-+.++|+.. ..
T Consensus       179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~------~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~  249 (967)
T KOG0974|consen  179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG------CTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQ  249 (967)
T ss_pred             EEEEEccCCcEEEEEecCcceeeeecccccccC------cccccccceeEEEEeccc---eeEEeccceEEEEEecccce
Confidence            999999999999999999999999999877643      223345789999999987   89999999999999754 22


Q ss_pred             eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          452 IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       452 ~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ...+..+ ....+..++.+++...++|++.||.+++|++...
T Consensus       250 l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  250 LEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            3344443 4567899999999999999999999999998653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.18  E-value=1.1e-08  Score=107.38  Aligned_cols=208  Identities=11%  Similarity=0.088  Sum_probs=126.8

Q ss_pred             CCCceeeccCccCeEEEEEcCCC-e--EE-EEeCCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-C
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSN-Y--LL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-D  349 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~-~--l~-s~s~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~-d  349 (645)
                      +...+.+......+..-.|+||| .  ++ +...+|  .|.+.++.+++........+.....+|+| ||+.|+..+. +
T Consensus       174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s~~~  252 (428)
T PRK01029        174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFISDRY  252 (428)
T ss_pred             CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEECCC
Confidence            34444555555667778999996 3  32 343333  57778888877655555555566789999 9988776553 2


Q ss_pred             C----cEEEEeCCC---CcEEEeecc-CCCeEEEEEccCCCEEEEEe-cCCeEEEEEec--CCceeeeEEeeccccccCC
Q 006424          350 G----KVRIWGVCE---KRVVDWADV-RDVISAICYIPDGKGFIVGS-ITGTCHFYKAS--GNDLKLEKVDFHDRKKTSG  418 (645)
Q Consensus       350 g----~i~vwd~~~---~~~~~~~~~-~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~  418 (645)
                      |    .+..|++..   +....+... .......+|+|||+.|+..+ .+|...+|.+.  ........+...      .
T Consensus       253 g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~------~  326 (428)
T PRK01029        253 GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK------Y  326 (428)
T ss_pred             CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC------C
Confidence            2    344467664   333444333 23456789999999887765 46655555443  211111111111      2


Q ss_pred             CCeEEEEEcCCCCcEEEEEEC-C--CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC---CccEEEEeCCC
Q 006424          419 NKITGIQFSRDESQRIMITSE-D--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---DCRVYVWNYDE  492 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~-d--g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~---dg~I~iwd~~~  492 (645)
                      ..+....|+||| +.|+..+. +  ..|.+||+......... .....+....|+|||++|+..+.   ...|++||+.+
T Consensus       327 ~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~  404 (428)
T PRK01029        327 RNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT  404 (428)
T ss_pred             CCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            356678999998 55555443 3  47899997643322211 12335677899999998875443   35788889877


Q ss_pred             C
Q 006424          493 L  493 (645)
Q Consensus       493 ~  493 (645)
                      +
T Consensus       405 g  405 (428)
T PRK01029        405 K  405 (428)
T ss_pred             C
Confidence            6

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.17  E-value=5.5e-09  Score=105.83  Aligned_cols=140  Identities=16%  Similarity=0.224  Sum_probs=114.7

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEE
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAI  375 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l  375 (645)
                      .++-|...|.|.+|++..|+....+.   |.+.|.++.++. +-..|.+++.|+.+..|+...+.... +...+..+.++
T Consensus        72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl  150 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL  150 (541)
T ss_pred             EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence            68888999999999999999888774   889999999987 77899999999999999999988766 55667789999


Q ss_pred             EEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC-----CCcEEEEEECCCeEEEEECC
Q 006424          376 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD-----ESQRIMITSEDSKLRILDGV  449 (645)
Q Consensus       376 ~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~-----g~~~l~~~s~dg~I~iwd~~  449 (645)
                      +++|||..+++++  +.|++||+++.+....   +.    +|.++|.+++|-.+     |..+|.+...+..+.+|-..
T Consensus       151 ~is~D~~~l~~as--~~ik~~~~~~kevv~~---ft----gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  151 CISPDGKILLTAS--RQIKVLDIETKEVVIT---FT----GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             EEcCCCCEEEecc--ceEEEEEccCceEEEE---ec----CCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            9999999998886  6899999998876432   33    34689999999876     53445555566777777543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.17  E-value=8.6e-09  Score=102.41  Aligned_cols=324  Identities=14%  Similarity=0.128  Sum_probs=197.1

Q ss_pred             CccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC---------------
Q 006424          286 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG---------------  350 (645)
Q Consensus       286 h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg---------------  350 (645)
                      ..-++..++|||.|.++....-..|.+|+-..+..+..+.|.. |..+.|+| .+++|.+-+..+               
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~~-V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n  108 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHPD-VKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKN  108 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccchhheeeeecCC-ceecccCc-ccceeeeeccCCccChhhccCCccccC
Confidence            5567889999999955555555679999988877777777765 89999999 999999866433               


Q ss_pred             cEEEEeCCCCcEEEeecc-CCC--eE-EEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424          351 KVRIWGVCEKRVVDWADV-RDV--IS-AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~~~~-~~~--v~-~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                      .+.+||..++.++..... ..+  .. -+.|+.+.+++|-. ....++++++ +......  .+..   .....|....|
T Consensus       109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~--p~~~---lr~~gi~dFsi  181 (561)
T COG5354         109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEH--PFKN---LRPVGILDFSI  181 (561)
T ss_pred             ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccC--chhh---ccccceeeEEe
Confidence            499999999998864332 222  23 57888888776654 4457899997 3332211  1111   11256888899


Q ss_pred             cCCCC-cEEEE-----EECCCeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEe-----------CCccEEE
Q 006424          427 SRDES-QRIMI-----TSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIG-----------DDCRVYV  487 (645)
Q Consensus       427 s~~g~-~~l~~-----~s~dg~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-----------~dg~I~i  487 (645)
                      +|.+. ..|+.     .+.++.+++|.+...  +.....  ....-..+.|.+.|++|..--           ....++|
T Consensus       182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl  259 (561)
T COG5354         182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL  259 (561)
T ss_pred             cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee--EeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence            99731 22332     356788999987622  111111  122234678899998876421           1346778


Q ss_pred             EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCC
Q 006424          488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSND  567 (645)
Q Consensus       488 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~d  567 (645)
                      +++.....+...           .-.+++...+|.|.+...+.+.+-.- ..+.+.+. .+.......+..-..+.|||.
T Consensus       260 ~~~~e~~i~V~~-----------~~~~pVhdf~W~p~S~~F~vi~g~~p-a~~s~~~l-r~Nl~~~~Pe~~rNT~~fsp~  326 (561)
T COG5354         260 LRITERSIPVEK-----------DLKDPVHDFTWEPLSSRFAVISGYMP-ASVSVFDL-RGNLRFYFPEQKRNTIFFSPH  326 (561)
T ss_pred             Eeecccccceec-----------cccccceeeeecccCCceeEEecccc-cceeeccc-ccceEEecCCcccccccccCc
Confidence            887744222221           22466778888888877765442100 00111111 111222233334456789999


Q ss_pred             CCCCcCCCCCC--CcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEec------CCCeEeEEEec
Q 006424          568 GPCRGSATWPA--EKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAG------CDGMIKTFHNY  639 (645)
Q Consensus       568 g~~l~s~s~~d--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s------~Dg~Iriw~~~  639 (645)
                      +++++.+..+.  |.|.+|+....-          +..............+++ |++++.++-      -|..|+||+++
T Consensus       327 ~r~il~agF~nl~gni~i~~~~~rf----------~~~~~~~~~n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         327 ERYILFAGFDNLQGNIEIFDPAGRF----------KVAGAFNGLNTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             ccEEEEecCCccccceEEeccCCce----------EEEEEeecCCceEeeccC-CceEEEecCCCcccccCcceEEEEec
Confidence            99888766532  578889877651          001011111112223444 788876653      48899999999


Q ss_pred             Ccccc
Q 006424          640 GLPIR  644 (645)
Q Consensus       640 g~~~~  644 (645)
                      |.++.
T Consensus       396 g~~~f  400 (561)
T COG5354         396 GAKVF  400 (561)
T ss_pred             Cchhh
Confidence            98864

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.16  E-value=3.8e-08  Score=111.68  Aligned_cols=283  Identities=12%  Similarity=0.219  Sum_probs=172.1

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeE-ecCCC-----CcccCCCCceEEecccCCCcceeecCCCc
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS-FTDDG-----GFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      -.+.|.|++||||+..|+.++.+|++.+.+. +.+..... ..++.     ....+++.....|-+..+..+.....+..
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            3468999999999999999999999988753 33322221 11111     11111111111111111111100000000


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeC------CCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEE
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM------DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~------dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~  344 (645)
                      .  .......+. +...-..++|-.|| +++..+.      -..++||+-+ |....+-+ ..+--.+++|.| .|+++|
T Consensus       198 ~--~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA  272 (928)
T PF04762_consen  198 V--PKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIA  272 (928)
T ss_pred             C--CccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEE
Confidence            0  000112233 55567789999998 6665543      2579999976 65444333 333345789999 999999


Q ss_pred             EEeC---CCcEEEEeCCCCcEEE----eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-EEeecccccc
Q 006424          345 SGSI---DGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKT  416 (645)
Q Consensus       345 s~s~---dg~i~vwd~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~  416 (645)
                      +...   ...|.+|.-++-+--.    +......|..+.|++++..||+...|. |.+|...+...-.+ .+.+..    
T Consensus       273 ~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~----  347 (928)
T PF04762_consen  273 SSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS----  347 (928)
T ss_pred             EEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC----
Confidence            8765   3457777755533322    224466799999999999999987665 99999998776544 222222    


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC-----------------------ccee-eEe-----------ecCCC
Q 006424          417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV-----------------------DVIH-KFK-----------GLPKS  461 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-----------------------~~~~-~~~-----------~~~~~  461 (645)
                       ...+..+.|+|..+..|...+.+|.+..++..                       +... .+.           ...-.
T Consensus       348 -~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~  426 (928)
T PF04762_consen  348 -SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELP  426 (928)
T ss_pred             -CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCC
Confidence             23455599999877778877776766555411                       0000 000           01135


Q ss_pred             CCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          462 GSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       462 ~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .+|..++|++++..+++-..||.|.+|.....
T Consensus       427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             CCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            68999999999988999999999999996554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=6.1e-09  Score=109.39  Aligned_cols=206  Identities=10%  Similarity=0.012  Sum_probs=123.2

Q ss_pred             CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCE--E-EEEeCCC--cEEEEeCCCCcEEEeeccCCCeEEEEEccCCC
Q 006424          308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY--F-ISGSIDG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGK  382 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~--l-~s~s~dg--~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~  382 (645)
                      ..|.+.|.+.+..............-.|+| +++.  + ++...+|  .|++.++.+++...+....+......|+|||+
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence            357777776555544444555667789999 8764  2 2443343  58888999888777766666677889999999


Q ss_pred             EEEEEec-CC----eEEEEEecCCce-eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE--ECCc--c-
Q 006424          383 GFIVGSI-TG----TCHFYKASGNDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVD--V-  451 (645)
Q Consensus       383 ~l~~g~~-dg----~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw--d~~~--~-  451 (645)
                      .|+..+. +|    .+..|++..... ....+. ...    .......+|+|||..++++...+|...+|  ++..  . 
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-~~~----~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~  318 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-NEA----FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS  318 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEee-cCC----CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence            8887653 23    334466554211 111111 110    12345679999984444445456655555  4421  1 


Q ss_pred             eeeEeecCCCCCeEEEEEecCCCEEEEEeCC---ccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccc
Q 006424          452 IHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQ  528 (645)
Q Consensus       452 ~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l  528 (645)
                      ...+..  ....+....|||||++|+..+.+   ..|++||+.+++.......           .+......|+|||..|
T Consensus       319 ~~~lt~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-----------~~~~~~p~wSpDG~~L  385 (428)
T PRK01029        319 PRLLTK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-----------PENKESPSWAIDSLHL  385 (428)
T ss_pred             eEEecc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-----------CCCccceEECCCCCEE
Confidence            222222  33466788999999999876643   4799999987743221111           1223456788888777


Q ss_pred             cccC
Q 006424          529 KSLC  532 (645)
Q Consensus       529 ~~~~  532 (645)
                      +...
T Consensus       386 ~f~~  389 (428)
T PRK01029        386 VYSA  389 (428)
T ss_pred             EEEE
Confidence            6433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.15  E-value=2.6e-09  Score=98.93  Aligned_cols=197  Identities=13%  Similarity=0.125  Sum_probs=136.9

Q ss_pred             eEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEE--Ee-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-EEE
Q 006424          290 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVD  364 (645)
Q Consensus       290 V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~--~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~-~~~  364 (645)
                      ..++.|++.+ .++++-.+|.+.+-+........  .. .|.-+++.+.|+..+.+++++|+.|+.+..||+|... .+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            4577788776 78899999999966655444433  33 3888899999998788999999999999999999433 222


Q ss_pred             --eeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC
Q 006424          365 --WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  441 (645)
Q Consensus       365 --~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg  441 (645)
                        ...|...|.++.-+| .+.++++|+.|-.|++||.++...+......       ++.|..+.++|.-...++.++.-+
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-------~GGVWRi~~~p~~~~~lL~~CMh~  276 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-------GGGVWRIKHHPEIFHRLLAACMHN  276 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-------ccceEEEEecchhhhHHHHHHHhc
Confidence              355778899998877 5779999999999999999977665532222       378999999997534455555555


Q ss_pred             eEEEEECCcceee-----EeecCCCCCeEEEEEecCCCEEEEEe-CCccEE-EEeCCCC
Q 006424          442 KLRILDGVDVIHK-----FKGLPKSGSQMSASFTTTGKHIISIG-DDCRVY-VWNYDEL  493 (645)
Q Consensus       442 ~I~iwd~~~~~~~-----~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~-iwd~~~~  493 (645)
                      ..+|.+.......     .....|.+-...-.|.....+|||++ .|+.++ +|-.-++
T Consensus       277 G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  277 GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             CceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            5677765432221     11123555555556644456788876 466644 6654433

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.15  E-value=1.8e-09  Score=101.98  Aligned_cols=253  Identities=15%  Similarity=0.163  Sum_probs=176.1

Q ss_pred             ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      .+.+.+.++||.+.|+....-|-..-+++.+.|.+++||--.+.                                    
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds------------------------------------   56 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDS------------------------------------   56 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccc------------------------------------
Confidence            34467778999999999999998888999999999999965431                                    


Q ss_pred             CCCceeccCCCc-eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC----CCeEEEEe-cCCCcEEEEEEeeCCCC
Q 006424          269 PDEVFQIEESPL-QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG----CNQCLNVF-DHHNYVTCVQFNPIDDN  341 (645)
Q Consensus       269 ~~~~~~~~~~~~-~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~----~~~~~~~~-~~~~~v~~l~~~p~~~~  341 (645)
                              ++.- ........+++++.+.++. .|+.|-..|++.-+.+.    .....+.+ .|...+..+-|+- ...
T Consensus        57 --------~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e  127 (404)
T KOG1409|consen   57 --------GQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THE  127 (404)
T ss_pred             --------cccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC-Cce
Confidence                    1111 1112245788899998876 78888888999888653    23333333 4889999999987 778


Q ss_pred             EEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424          342 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  421 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  421 (645)
                      .+++.+.|..+.---.+.+..+.-.......+++.+.-.  +..+|...|.+..-.+.......     ..+...|.+.+
T Consensus       128 ~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~-----i~~~~~h~~~~  200 (404)
T KOG1409|consen  128 WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQL-----ITTFNGHTGEV  200 (404)
T ss_pred             eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCce-----EEEEcCcccce
Confidence            888888887654333343332211111111112222111  56667777777766655443322     22234456899


Q ss_pred             EEEEEcCCCCcEEEEEECCCeEEEEECC-cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          422 TGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      ++++|.+.. ..+++|..|..+.+||+. .....+....|...|..+..-+.-+.+++++.||.|-+|+++...
T Consensus       201 ~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  201 TCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             EEEEEcCCC-cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            999999986 899999999999999976 333344455588888888888888999999999999999998653

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=4.8e-09  Score=104.98  Aligned_cols=318  Identities=14%  Similarity=0.212  Sum_probs=193.4

Q ss_pred             eEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-----------CCcEEEEeC
Q 006424          290 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-----------DGKVRIWGV  357 (645)
Q Consensus       290 V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~-----------dg~i~vwd~  357 (645)
                      =+.+.|||.| +|+|--. .-|.+|--.+-..++.|.|++ |.-+.|+| ..+||++-+.           ...++|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEec-cceeeecCccHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEc
Confidence            4568999998 6666554 458999877777777787876 88999999 9999998663           256999999


Q ss_pred             CCCcEEEeecc---CCC-eEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424          358 CEKRVVDWADV---RDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  433 (645)
Q Consensus       358 ~~~~~~~~~~~---~~~-v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~  433 (645)
                      ++|.+......   ... -.-+.||.|++++|.... ..|.||+.....+ ..      ........|....|+|.+ ++
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l-ld------~Kslki~gIr~FswsP~~-~l  360 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML-LD------KKSLKISGIRDFSWSPTS-NL  360 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee-ec------ccccCCccccCcccCCCc-ce
Confidence            99987763322   222 234689999999998765 5788998765332 11      111123568889999985 66


Q ss_pred             EEEEECC-----CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe----------CCccEEEEeCCCCCcCCC
Q 006424          434 IMITSED-----SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG----------DDCRVYVWNYDELCFPSS  498 (645)
Q Consensus       434 l~~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s----------~dg~I~iwd~~~~~~~~~  498 (645)
                      ||-=+..     .++-+..+......-...-+.-.=..+.|-.+|.+|+.--          .-..+-|+.++....+. 
T Consensus       361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv-  439 (698)
T KOG2314|consen  361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV-  439 (698)
T ss_pred             EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc-
Confidence            6543321     2344444332111111111222223566777888887532          11235566665543222 


Q ss_pred             cccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCC---ccC-CCCccccCccccCCCCCCcCC
Q 006424          499 KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP---WIR-DSERFSLGSWFSNDGPCRGSA  574 (645)
Q Consensus       499 ~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~---~~~-~~~~~~~~~~fs~dg~~l~s~  574 (645)
                               ....-...+++.+|-|.|...+.+........+.++.......   .+. -..-+.+.+.|||.|++++.+
T Consensus       440 ---------e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva  510 (698)
T KOG2314|consen  440 ---------EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVA  510 (698)
T ss_pred             ---------eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEE
Confidence                     2222245688999999999998877776655555544432111   111 122467888999999977654


Q ss_pred             CCC--CCcCCCCCCccCCCCCcCChhhhHhhhhhc-cCCC-CCccCCCCcceEEEEecC------CCeEeEEEecCc
Q 006424          575 TWP--AEKLPLWDVTIDSDGYCQDPQQQRLQQQCL-NNVD-DVRAISATWGLVIVTAGC------DGMIKTFHNYGL  641 (645)
Q Consensus       575 s~~--d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~d~~~ivt~s~------Dg~Iriw~~~g~  641 (645)
                      ..-  .|.+..+|+.-.           .++...+ .|.. ..+.+.|. |++++|++.      |.--|||.++|-
T Consensus       511 ~l~s~~g~l~F~D~~~a-----------~~k~~~~~eh~~at~veWDPt-GRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  511 ALVSRRGDLEFYDTDYA-----------DLKDTASPEHFAATEVEWDPT-GRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             EecccccceEEEecchh-----------hhhhccCccccccccceECCC-CCEEEEeeehhhhccccceEEEEeecH
Confidence            432  566777776642           1122222 1211 12334454 999999875      455678888874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.12  E-value=3.9e-07  Score=87.66  Aligned_cols=254  Identities=16%  Similarity=0.234  Sum_probs=169.0

Q ss_pred             ccccCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          197 QAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       197 ~~H~~~V~~l~fspdg~~L~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      -.+.+..+-|+|+|++++|.++-.+   |.|..|.++...                  +.+.+.                
T Consensus        36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~------------------G~Lt~l----------------   81 (346)
T COG2706          36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD------------------GRLTFL----------------   81 (346)
T ss_pred             ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC------------------CeEEEe----------------
Confidence            3577789999999999999888654   677777776410                  000000                


Q ss_pred             eccCCCceeeccCccCeEEEEEcCCC-eEEEEeC-CCcEEEEecCC-CeE---EEEecCCCc----------EEEEEEee
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGC-NQC---LNVFDHHNY----------VTCVQFNP  337 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~-dg~I~iwd~~~-~~~---~~~~~~~~~----------v~~l~~~p  337 (645)
                         .  .....|  .+-..++.++++ +++++.. -|.|.++-+.. |..   +....|.+.          +.+..+.|
T Consensus        82 ---n--~~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP  154 (346)
T COG2706          82 ---N--RQTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP  154 (346)
T ss_pred             ---e--ccccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC
Confidence               0  011112  222778888888 6776655 47899998854 433   233345544          88899999


Q ss_pred             CCCCEEEEEeC-CCcEEEEeCCCCcEEE----eeccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCCceeeeEEeec
Q 006424          338 IDDNYFISGSI-DGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFH  411 (645)
Q Consensus       338 ~~~~~l~s~s~-dg~i~vwd~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~  411 (645)
                       +++++++... --.|.+|++..+.+..    ........+.|.|+|++++.++.++ +++|.+|...........+...
T Consensus       155 -~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i  233 (346)
T COG2706         155 -DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI  233 (346)
T ss_pred             -CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence             9999888764 2469999999877654    2345567889999999999887765 8899999998753333322221


Q ss_pred             cc---cccCCCCeEEEEEcCCCCcEEEEEEC-CCeEEEEECCcc--eeeEee--cCCCCCeEEEEEecCCCEEEEEeCC-
Q 006424          412 DR---KKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVDV--IHKFKG--LPKSGSQMSASFTTTGKHIISIGDD-  482 (645)
Q Consensus       412 ~~---~~~~~~~i~~i~~s~~g~~~l~~~s~-dg~I~iwd~~~~--~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d-  482 (645)
                      ..   ..........|..+++| ++|.++.+ ...|.++.+...  ...+..  ..+........|++.|++|+++..+ 
T Consensus       234 ~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s  312 (346)
T COG2706         234 DTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS  312 (346)
T ss_pred             ccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence            11   11123567789999998 67776654 357888876532  222222  2233446889999999999998864 


Q ss_pred             ccEEEEeCCCC
Q 006424          483 CRVYVWNYDEL  493 (645)
Q Consensus       483 g~I~iwd~~~~  493 (645)
                      ..|.+|..+..
T Consensus       313 d~i~vf~~d~~  323 (346)
T COG2706         313 DNITVFERDKE  323 (346)
T ss_pred             CcEEEEEEcCC
Confidence            57999987654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.12  E-value=4.9e-10  Score=125.64  Aligned_cols=188  Identities=18%  Similarity=0.286  Sum_probs=149.5

Q ss_pred             ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424          284 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  360 (645)
Q Consensus       284 ~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~  360 (645)
                      +.|-..|.++.-+|.. +.+||+.||.|++|....++.+..++  .+..|+.+.|+. .|+.+..+..||.+.+|.+...
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCCc
Confidence            3355677777777765 88999999999999999998888775  447899999999 8999999999999999999977


Q ss_pred             cEEEeeccCCCeEEEEEccCCCEEEEEe---cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006424          361 RVVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  437 (645)
Q Consensus       361 ~~~~~~~~~~~v~~l~~sp~g~~l~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~  437 (645)
                      .......|....+.+.|-.  ..+++++   .++.+.+||..-......   .+   ..|...++++++.|.. +++++|
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~---v~---~~H~~gaT~l~~~P~~-qllisg 2354 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL---VH---TCHDGGATVLAYAPKH-QLLISG 2354 (2439)
T ss_pred             ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce---ee---eecCCCceEEEEcCcc-eEEEec
Confidence            7777888988888888865  5566653   568999999754332211   11   3356889999999996 899999


Q ss_pred             ECCCeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          438 SEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       438 s~dg~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +.+|.|++||++..  .+.+..           ++ ...++++|+..|.|+||++...
T Consensus      2355 gr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             CCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcccc
Confidence            99999999998743  322222           44 6789999999999999999876

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.09  E-value=4.1e-08  Score=94.22  Aligned_cols=279  Identities=13%  Similarity=0.117  Sum_probs=170.5

Q ss_pred             CCcEEEEecCCC----eEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEeCCC--CcEEEe---eccCCCeEE
Q 006424          307 DKTVRMWQVGCN----QCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE--KRVVDW---ADVRDVISA  374 (645)
Q Consensus       307 dg~I~iwd~~~~----~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d---g~i~vwd~~~--~~~~~~---~~~~~~v~~  374 (645)
                      +.-|++|++.+.    ..+........++-++|+| +.+.|+++..+   |.|-.|.+..  |++..+   .....+.+.
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y   93 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY   93 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence            467999999732    2334445777889999999 88888887654   6677776654  555432   222344588


Q ss_pred             EEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEee--cccc----ccCCCCeEEEEEcCCCCcEEEEEE-CCCeEEEE
Q 006424          375 ICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDF--HDRK----KTSGNKITGIQFSRDESQRIMITS-EDSKLRIL  446 (645)
Q Consensus       375 l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~--~~~~----~~~~~~i~~i~~s~~g~~~l~~~s-~dg~I~iw  446 (645)
                      ++++++|++++++. ..|.|.++-++........+..  +...    +.....+-+..+.|++ ++|++.. .-.+|.+|
T Consensus        94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y  172 (346)
T COG2706          94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEE
Confidence            99999999988875 4689999998764333222111  1111    1112237788999998 5666654 34689999


Q ss_pred             ECCcceeeEee---cCCCCCeEEEEEecCCCEEEEEeC-CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecC
Q 006424          447 DGVDVIHKFKG---LPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  522 (645)
Q Consensus       447 d~~~~~~~~~~---~~~~~~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s  522 (645)
                      ++.+.......   .........|.|+|++++....++ +++|-+|.++........-......-..|..+...-++.-+
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis  252 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS  252 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence            97633221111   124556789999999999887775 89999999988521111100000001124444455567778


Q ss_pred             CCCccccccCCCCccccCccccc----cccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCc
Q 006424          523 GIGTEQKSLCSSSLRDCSQKWDN----LETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT  587 (645)
Q Consensus       523 ~~~~~l~~~~~~~~~~~~~~w~~----~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~  587 (645)
                      +||.+|..+....-.-....-+.    +.........+.+-+...|+++|++|+.+......|.++.+.
T Consensus       253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            88888876554321000000011    111222333344467778999999888887766678888654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.07  E-value=1.3e-09  Score=117.01  Aligned_cols=147  Identities=24%  Similarity=0.439  Sum_probs=125.5

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeecc
Q 006424          206 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG  285 (645)
Q Consensus       206 l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  285 (645)
                      +.++++.-++++|+.-+.|.+|+...                                            +..+. .+.|
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~--------------------------------------------dn~p~-~l~G  173 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHE--------------------------------------------DNKPI-RLKG  173 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccc--------------------------------------------cCCcc-eecc
Confidence            44567777999999999999999863                                            12233 6789


Q ss_pred             CccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEE--EecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE
Q 006424          286 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  362 (645)
Q Consensus       286 h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~--~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~  362 (645)
                      |.+.|.++.|+.+| +++++|.|.++++|++++.+...  -|+|+..|+.+.|+| +  .+++++.|-+.++|+.....+
T Consensus       174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~l  250 (967)
T KOG0974|consen  174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQL  250 (967)
T ss_pred             cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEeccccee
Confidence            99999999999887 99999999999999999887765  568999999999998 4  999999999999998877766


Q ss_pred             EEeecc-CCCeEEEEEccCCCEEEEEecCCeEEEEEecC
Q 006424          363 VDWADV-RDVISAICYIPDGKGFIVGSITGTCHFYKASG  400 (645)
Q Consensus       363 ~~~~~~-~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~  400 (645)
                      ..+.+| ...+..+...++....++++.||.+++|++.+
T Consensus       251 ~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  251 EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            666666 45689999999999999999999999999864

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.04  E-value=2.7e-07  Score=106.92  Aligned_cols=205  Identities=13%  Similarity=0.148  Sum_probs=134.7

Q ss_pred             CeEEEEEcCCC-eEEEE-eCCCcEEEEecCCCeEEEEecC-----------------CCcEEEEEEeeCCCCEEEEEeCC
Q 006424          289 DVLDLAWSNSN-YLLSC-SMDKTVRMWQVGCNQCLNVFDH-----------------HNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       289 ~V~~l~~s~~~-~l~s~-s~dg~I~iwd~~~~~~~~~~~~-----------------~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                      ....+++++++ .|+.+ ...+.|+++|..++......+.                 -.....++++|.++.++++.+.+
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            35678888764 55544 4567899999877654322110                 12346789998555666777778


Q ss_pred             CcEEEEeCCCCcEEEeecc---------------CCCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEE-----
Q 006424          350 GKVRIWGVCEKRVVDWADV---------------RDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKV-----  408 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~~---------------~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~-----  408 (645)
                      +.|++||..++....+.+.               -.....++++|+|+.|+++ +.++.|++||+.+........     
T Consensus       705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~  784 (1057)
T PLN02919        705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF  784 (1057)
T ss_pred             CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence            9999999988766543221               1235679999999865554 556899999988654321100     


Q ss_pred             -----eeccc----cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce-eeEeecC------------CCCCeEE
Q 006424          409 -----DFHDR----KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLP------------KSGSQMS  466 (645)
Q Consensus       409 -----~~~~~----~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~------------~~~~i~~  466 (645)
                           .+...    .........+++++++| .++++-+.++.|++||..... ..+.+..            .-....+
T Consensus       785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G  863 (1057)
T PLN02919        785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG  863 (1057)
T ss_pred             CcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence                 00000    00001234688999998 688888889999999976432 2222211            1125678


Q ss_pred             EEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          467 ASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       467 v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      ++++++|+.+++-+.+++|++||+.++.
T Consensus       864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        864 LALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            9999999999998899999999998764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.04  E-value=6.2e-08  Score=88.73  Aligned_cols=228  Identities=11%  Similarity=-0.051  Sum_probs=147.2

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEe-c-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccC-CCeEE
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVF-D-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISA  374 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~-~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~v~~  374 (645)
                      .++|+.|+..|...+|...+.+....+ . +...|+-+.=.-.....+..++.|.++++.++..+......... -.+.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            358999999999999999876654333 2 33333222111102234667788999999988765433321111 33889


Q ss_pred             EEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceee
Q 006424          375 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK  454 (645)
Q Consensus       375 l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~  454 (645)
                      +.++++++++++.+....|.+|.+.........+.....    ...-.+.+|+... ..+|++..||++.|||++.....
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t----~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT----SDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc----CCCceeeeeccCc-ceEEEEecCCcEEEEEecccccc
Confidence            999999999999999999999999876554443222221    2445678899886 79999999999999998743221


Q ss_pred             -----EeecCCCCCeEEEEEecCCC--EEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCc-EEEEecCCCCc
Q 006424          455 -----FKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV-SVAVQWPGIGT  526 (645)
Q Consensus       455 -----~~~~~~~~~i~~v~~sp~~~--~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~v~~s~~~~  526 (645)
                           -....|.+.+..+.|++.|.  +|+..-.-+.+.+-|++++............   .+.|... +....|+.++.
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~---~~~~~tq~ifgt~f~~~n~  315 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV---ERKHNTQHIFGTNFNNENE  315 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc---cccccccccccccccCCCc
Confidence                 12244889999999998663  4555555688999999987422211111111   2233333 56666776666


Q ss_pred             cccccCC
Q 006424          527 EQKSLCS  533 (645)
Q Consensus       527 ~l~~~~~  533 (645)
                      .......
T Consensus       316 s~~v~~e  322 (344)
T KOG4532|consen  316 SNDVKNE  322 (344)
T ss_pred             ccccccc
Confidence            5554333

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.03  E-value=4.8e-08  Score=97.65  Aligned_cols=269  Identities=11%  Similarity=0.023  Sum_probs=154.3

Q ss_pred             CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC----------CCcEEEEeCCCCcEEEeeccCC-------
Q 006424          308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI----------DGKVRIWGVCEKRVVDWADVRD-------  370 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~-------  370 (645)
                      ++|.+.|..+++.+..+........+ ++| +++.++++..          +..|.+||..+.+.........       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            89999999999999988755444555 899 8887776665          7889999999988876444322       


Q ss_pred             -CeEEEEEccCCCEEEEEe-c-CCeEEEEEecCCceeeeEEeecccccc-CCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424          371 -VISAICYIPDGKGFIVGS-I-TGTCHFYKASGNDLKLEKVDFHDRKKT-SGNKITGIQFSRDESQRIMITSEDSKLRIL  446 (645)
Q Consensus       371 -~v~~l~~sp~g~~l~~g~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw  446 (645)
                       ....+.++|||+++++.. . ++.+.+.|+.+.+...+ +...+.... ....-..+..+.||....++...+|....=
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~e-i~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRM-MDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEE-EeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence             234789999999999876 3 68999999998876432 222211000 001111222334443233333333332210


Q ss_pred             ECCcceeeEeec---CCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcc---eeeeeecCCcEEEE
Q 006424          447 DGVDVIHKFKGL---PKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR---SCEHFFSEGVSVAV  519 (645)
Q Consensus       447 d~~~~~~~~~~~---~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~v  519 (645)
                      .    ...+...   ....+    .|++ +|+++....+ |.|++-|+...............   .-..+.|.|.- .+
T Consensus       184 ~----~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q-~i  253 (352)
T TIGR02658       184 P----TEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ-QV  253 (352)
T ss_pred             e----eeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcce-eE
Confidence            0    0111110   00112    4456 8888877766 99999997665322211110000   00023344432 37


Q ss_pred             ecCCCCccccccCCCCc-------cccCccccccccCC-ccCCCCccccCccccCCCC-CCcCCCCCCCcCCCCCCccC
Q 006424          520 QWPGIGTEQKSLCSSSL-------RDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGP-CRGSATWPAEKLPLWDVTID  589 (645)
Q Consensus       520 ~~s~~~~~l~~~~~~~~-------~~~~~~w~~~~~~~-~~~~~~~~~~~~~fs~dg~-~l~s~s~~d~~i~iWd~~~~  589 (645)
                      ++++++..++.+.....       ...+.+.+...... ....-+....+++|||||+ ++..+.+.++.|.+.|..++
T Consensus       254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            78888887776432111       01122222211111 1112345677899999999 77777765788999998887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.02  E-value=6.8e-09  Score=96.17  Aligned_cols=198  Identities=16%  Similarity=0.188  Sum_probs=134.1

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424          203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  282 (645)
Q Consensus       203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (645)
                      -.++.|++.+.-++++-.+|.+.+-+....                                           .-+.++.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-------------------------------------------~le~vq~  160 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEM-------------------------------------------VLEKVQT  160 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEeccee-------------------------------------------eeeeccc
Confidence            457788888888888888888874433221                                           0233567


Q ss_pred             eccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecC-CCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424          283 LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVG-CNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  357 (645)
Q Consensus       283 l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~-~~~~~~~~--~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~  357 (645)
                      +++|..+++.+.|+..  +.+++|+.|+.+..||++ .++.+...  .|...|.++.-+|..+.++++|+.|..|++||.
T Consensus       161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~Dt  240 (339)
T KOG0280|consen  161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDT  240 (339)
T ss_pred             ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeeh
Confidence            8899999999999854  489999999999999998 44444432  388899999999878899999999999999999


Q ss_pred             CC-CcEEEeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          358 CE-KRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       358 ~~-~~~~~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      |. ++.+.-....+.|..+..+|.-. .++.++.-.-.++-+.+....... +.+. ....|.+-+..-.|.... .+++
T Consensus       241 Rnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~-~~~~-s~~~hdSl~YG~DWd~~~-~~lA  317 (339)
T KOG0280|consen  241 RNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQ-IVLP-SDKIHDSLCYGGDWDSKD-SFLA  317 (339)
T ss_pred             hcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchh-eeee-ccccccceeecccccccc-ceee
Confidence            94 77777667778999999999432 333334444456666665443311 1111 112233444444553332 4677


Q ss_pred             EEE-CCCeEE-EE
Q 006424          436 ITS-EDSKLR-IL  446 (645)
Q Consensus       436 ~~s-~dg~I~-iw  446 (645)
                      +++ .|+.++ +|
T Consensus       318 TCsFYDk~~~~~W  330 (339)
T KOG0280|consen  318 TCSFYDKKIRQLW  330 (339)
T ss_pred             eeeccccceeeee
Confidence            754 344433 44

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.01  E-value=1.3e-06  Score=87.53  Aligned_cols=245  Identities=12%  Similarity=0.097  Sum_probs=143.3

Q ss_pred             ECCCCCEEEEEeC----------CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          208 FSPDGRYLASGGE----------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       208 fspdg~~L~sgs~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      +||||+.|..+..          +..|.+||..+.........+..                                  
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~----------------------------------   98 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG----------------------------------   98 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC----------------------------------
Confidence            9999997776655          78899999998544322111100                                  


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEe-C-CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCS-M-DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s-~-dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                       +.  +. ....-..++++|+| +|+... . +..|.+.|+.+++.+..+.-.+...-...++ +. .+ +-+.||....
T Consensus        99 -p~--~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e-~~-~~-~~~~Dg~~~~  171 (352)
T TIGR02658        99 -PR--FL-VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN-DT-FF-MHCRDGSLAK  171 (352)
T ss_pred             -ch--hh-ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC-Cc-cE-EEeecCceEE
Confidence             00  00 11223457889998 555444 3 7899999999999999887655333333332 22 22 2233555444


Q ss_pred             EeCCC-CcEEE----eecc-CCCe-EEEEEcc-CCCEEEEEecCCeEEEEEecCCceeee-EEeecccc----ccCCCCe
Q 006424          355 WGVCE-KRVVD----WADV-RDVI-SAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRK----KTSGNKI  421 (645)
Q Consensus       355 wd~~~-~~~~~----~~~~-~~~v-~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~----~~~~~~i  421 (645)
                      ..+.+ ++...    +... ..++ ..-.|.+ +|+++.+... |.|.+.|+.+...... .+......    .-....+
T Consensus       172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~  250 (352)
T TIGR02658       172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW  250 (352)
T ss_pred             EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence            33322 22111    1111 0000 0003455 8888888777 9999999765433222 11111100    0112334


Q ss_pred             EEEEEcCCCCcEEEEEE---------CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-EEEEEe-CCccEEEEeC
Q 006424          422 TGIQFSRDESQRIMITS---------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVYVWNY  490 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s---------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s-~dg~I~iwd~  490 (645)
                      .-++++++++..++...         ..+.|.++|..+........ -...+.+++++||++ +|++.. .++.|.+.|.
T Consensus       251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence            44999999844444332         22589999987655544443 345889999999999 887666 5788999999


Q ss_pred             CCCCc
Q 006424          491 DELCF  495 (645)
Q Consensus       491 ~~~~~  495 (645)
                      .+++.
T Consensus       330 ~t~k~  334 (352)
T TIGR02658       330 ETGKE  334 (352)
T ss_pred             cCCeE
Confidence            88753

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1.8e-07  Score=93.94  Aligned_cols=271  Identities=12%  Similarity=0.187  Sum_probs=169.5

Q ss_pred             ccCcEEEEEECCCCCEEEEEeC-----------CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424          199 HKGCIWTLKFSPDGRYLASGGE-----------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  267 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~-----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (645)
                      |.+ |.-+.|||..+||+|=+.           ...++|||+.+|...                                
T Consensus       249 Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk--------------------------------  295 (698)
T KOG2314|consen  249 HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK--------------------------------  295 (698)
T ss_pred             CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh--------------------------------
Confidence            444 889999999999999753           256899999985432                                


Q ss_pred             cCCCceeccCCCceeecc---CccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEE
Q 006424          268 IPDEVFQIEESPLQELHG---HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF  343 (645)
Q Consensus       268 ~~~~~~~~~~~~~~~l~~---h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l  343 (645)
                                   +.+..   ....-.-..||.|+.+++.-...+|.||+..+..++..-. ....|....|+| .+++|
T Consensus       296 -------------rsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~ll  361 (698)
T KOG2314|consen  296 -------------RSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLL  361 (698)
T ss_pred             -------------cceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceE
Confidence                         22221   1111223578888744444344689999887644433222 345688999999 77777


Q ss_pred             EEEeCC-----CcEEEEeCCCCcEEEeec-cCCCeEEEEEccCCCEEEEEe----------cCCeEEEEEecCCceeeeE
Q 006424          344 ISGSID-----GKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGS----------ITGTCHFYKASGNDLKLEK  407 (645)
Q Consensus       344 ~s~s~d-----g~i~vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~----------~dg~i~iwd~~~~~~~~~~  407 (645)
                      |.-...     ..+.+-.+.+++.++... +.-.-..+.|-.+|.+|++--          .-.++.|+.++....+...
T Consensus       362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~  441 (698)
T KOG2314|consen  362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV  441 (698)
T ss_pred             EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence            765432     246666666655544322 222223466777888887632          2235678888888887776


Q ss_pred             EeeccccccCCCCeEEEEEcCCCCcEEEEEECC--CeEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEe---
Q 006424          408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSED--SKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIG---  480 (645)
Q Consensus       408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d--g~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s---  480 (645)
                      +.+.       ..|...+|-|.|.++.+..+.+  .++.+|...+.......  .-.....+.+.|+|.|++++.+.   
T Consensus       442 velk-------e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s  514 (698)
T KOG2314|consen  442 VELK-------ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS  514 (698)
T ss_pred             eecc-------hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecc
Confidence            6665       5789999999985544444443  67888876632222211  11234567899999999998764   


Q ss_pred             CCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424          481 DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS  533 (645)
Q Consensus       481 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~  533 (645)
                      ..|.+.++|++-..........          .....-+-|.|.|.++.++.+
T Consensus       515 ~~g~l~F~D~~~a~~k~~~~~e----------h~~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  515 RRGDLEFYDTDYADLKDTASPE----------HFAATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             cccceEEEecchhhhhhccCcc----------ccccccceECCCCCEEEEeee
Confidence            5789999998753211111111          112345779999998886554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.98  E-value=2.8e-09  Score=119.78  Aligned_cols=189  Identities=13%  Similarity=0.230  Sum_probs=144.3

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      ++.|-..|.++.=+|...+-+||+.||.|++|....+.                                          
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~------------------------------------------ 2241 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ------------------------------------------ 2241 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCC------------------------------------------
Confidence            45567789999999999999999999999999987632                                          


Q ss_pred             cCCCceeec-cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe---CC
Q 006424          276 EESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS---ID  349 (645)
Q Consensus       276 ~~~~~~~l~-~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s---~d  349 (645)
                         .+..+. +-...|+.+.|+.+| .+..+..||.+.+|.+. .++.... -|+.......|-.   ..+++++   .+
T Consensus      2242 ---~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~ 2314 (2439)
T KOG1064|consen 2242 ---QVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDN 2314 (2439)
T ss_pred             ---eEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee---hhhhccccCCCC
Confidence               222222 223788889998876 88899999999999988 3333333 3888888888863   5666654   46


Q ss_pred             CcEEEEeCCC--CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424          350 GKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  427 (645)
Q Consensus       350 g~i~vwd~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s  427 (645)
                      +.+.+||..-  +.......|.+.++++++-|..+.|++|+.+|.|++||++..+....            -..    +.
T Consensus      2315 ~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~------------~~~----~~ 2378 (2439)
T KOG1064|consen 2315 RNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHT------------FQA----LD 2378 (2439)
T ss_pred             CcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHH------------hhh----hh
Confidence            8899999643  33333378999999999999999999999999999999997665321            111    33


Q ss_pred             CCCCcEEEEEECCCeEEEEECCcc
Q 006424          428 RDESQRIMITSEDSKLRILDGVDV  451 (645)
Q Consensus       428 ~~g~~~l~~~s~dg~I~iwd~~~~  451 (645)
                       . ..++++|+..|.++||++...
T Consensus      2379 -~-~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2379 -T-REYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             -h-hheeeccCcccceEEEEcccc
Confidence             2 368999999999999997743

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=1.3e-09  Score=108.60  Aligned_cols=246  Identities=12%  Similarity=0.169  Sum_probs=163.9

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      ...+.||+..|..+.--.+.+-+++++.|++|++|.++...-...                                   
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~-----------------------------------  772 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG-----------------------------------  772 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc-----------------------------------
Confidence            456789999999998888888999999999999999876210000                                   


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeC-CCCEEEE-E
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPI-DDNYFIS-G  346 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~-~~~~l~s-~  346 (645)
                         ......++..|+.+|.++.|-.+. +++  +.||.|.+||.--++.+....   ..+.+..+...|. +..+++. +
T Consensus       773 ---tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgc  847 (1034)
T KOG4190|consen  773 ---TSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGC  847 (1034)
T ss_pred             ---cceeeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeec
Confidence               022345778899999999998765 454  457899999987777765442   2222333333331 3344444 4


Q ss_pred             eCCCcEEEEeCCCCcEEE------eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          347 SIDGKVRIWGVCEKRVVD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~------~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      +...+|+++|.+..+...      -.+....+.+++..+.|+.++++-..|.|.+.|.+++..... +...      ...
T Consensus       848 saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs-wrpm------ecd  920 (1034)
T KOG4190|consen  848 SAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS-WRPM------ECD  920 (1034)
T ss_pred             cchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc-CCcc------cch
Confidence            778999999999866432      233456689999999999999999999999999998875322 1100      011


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEE-EECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRI-LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~i-wd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                      ...++ .|.. +.++....|..+.+ |..-.....+.......+..-+  -.-|.-|+++.....+.+|.
T Consensus       921 llqla-apsd-q~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  921 LLQLA-APSD-QALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             hhhhc-Cchh-HHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence            12222 2333 67888888999988 8765555555543222221111  12366788887777788874

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.97  E-value=1.4e-07  Score=86.38  Aligned_cols=189  Identities=12%  Similarity=0.084  Sum_probs=127.3

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEEecCC-CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc--EEE--eeccCCCeEE
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR--VVD--WADVRDVISA  374 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~--~~~--~~~~~~~v~~  374 (645)
                      .+..++.|.++++.+++.+......... -.+.++++++ ++.++++.+....|..|.+....  ...  .....+.-.+
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~  208 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY  208 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence            5778889999999988644332222111 2388999999 99999999999999999886532  222  3334455567


Q ss_pred             EEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc-EEEEEECCCeEEEEECCccee
Q 006424          375 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ-RIMITSEDSKLRILDGVDVIH  453 (645)
Q Consensus       375 l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~-~l~~~s~dg~I~iwd~~~~~~  453 (645)
                      ..|+.....+|++..||++.|||++....+.....  ..+..|.+.+..+.|++.|.. +|+..-.-+.+.+.|+++...
T Consensus       209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s--strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS--STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             eeeccCcceEEEEecCCcEEEEEecccccchhhhc--ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence            88999999999999999999999998776654332  223346789999999987643 444444558899999885432


Q ss_pred             eEee--------cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          454 KFKG--------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       454 ~~~~--------~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      ....        ......|....|+.++..+.+.+++ .+.=|++.+
T Consensus       287 ~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  287 HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             eeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence            2111        1122346777777777666655443 344455543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.94  E-value=2.2e-06  Score=84.79  Aligned_cols=140  Identities=14%  Similarity=0.133  Sum_probs=94.9

Q ss_pred             CCeEEEEEcCCCCcEEEEEECCC-eEEEEECCcce-eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424          419 NKITGIQFSRDESQRIMITSEDS-KLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  496 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg-~I~iwd~~~~~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~  496 (645)
                      ..|.-..+..++ .-++.|..|| .+-|+|.+... ..+..  .-+.|.++..+|+|++++.+.+...|.+.|++++...
T Consensus       360 ~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~  436 (668)
T COG4946         360 GGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR  436 (668)
T ss_pred             CceEEEEEccCC-cceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence            345555555554 4678888887 88889877543 33332  6778999999999999999999999999999998533


Q ss_pred             CCcccCCcceeeeeecCCcEEEEecCCCCccccccCCC-CccccCccccccccCC-ccCCCCccccCccccCCCCCC
Q 006424          497 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS-SLRDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGPCR  571 (645)
Q Consensus       497 ~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~-~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~fs~dg~~l  571 (645)
                      .          +.-+..+.++...|+|++..++-.--+ -....+++.+...... .......+-.+.+|.|||++|
T Consensus       437 ~----------idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         437 L----------IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             E----------ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEE
Confidence            2          223345677888888888887743332 2333344444433222 333444566788999999965

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=1.3e-07  Score=98.46  Aligned_cols=257  Identities=14%  Similarity=0.193  Sum_probs=168.5

Q ss_pred             cccccccccccCcEEEEEECCCC------------CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEec
Q 006424          190 LYTSQEIQAHKGCIWTLKFSPDG------------RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG  257 (645)
Q Consensus       190 ~~~~~~l~~H~~~V~~l~fspdg------------~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (645)
                      .+.++++..|+..|+.+.|.|..            -.||++...|.|.+||...                          
T Consensus        45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~--------------------------   98 (1062)
T KOG1912|consen   45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL--------------------------   98 (1062)
T ss_pred             hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh--------------------------
Confidence            44677788899999999998732            1677888889999999876                          


Q ss_pred             ccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcC---C--CeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEE
Q 006424          258 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN---S--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVT  331 (645)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~---~--~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~  331 (645)
                                         ...+..+..|..++..++|-+   +  ..|++-....++.+|+..+|+....+. ......
T Consensus        99 -------------------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs  159 (1062)
T KOG1912|consen   99 -------------------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS  159 (1062)
T ss_pred             -------------------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee
Confidence                               333556677889999999974   2  257777777899999999999988876 445677


Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEeCCC-------CcEEEe-eccCC------------C-------------eEEEEEc
Q 006424          332 CVQFNPIDDNYFISGSIDGKVRIWGVCE-------KRVVDW-ADVRD------------V-------------ISAICYI  378 (645)
Q Consensus       332 ~l~~~p~~~~~l~s~s~dg~i~vwd~~~-------~~~~~~-~~~~~------------~-------------v~~l~~s  378 (645)
                      |+.+.|.+.+.+..-+..|.+.+-+.-.       ++..++ ..|.+            .             .-.++|+
T Consensus       160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~  239 (1062)
T KOG1912|consen  160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS  239 (1062)
T ss_pred             eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence            8999998888888777788877776532       222221 11111            0             1135678


Q ss_pred             cCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC-cEEEEEECCCeEEEEECCcceeeEee
Q 006424          379 PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES-QRIMITSEDSKLRILDGVDVIHKFKG  457 (645)
Q Consensus       379 p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~-~~l~~~s~dg~I~iwd~~~~~~~~~~  457 (645)
                      |.-+.++.......+.++|++-.... ..+.+..      +.+.-+.+-|++. ..|++...||.+.+|-.+..-..++.
T Consensus       240 p~~rn~lfi~~prellv~dle~~~~l-~vvpier------~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~  312 (1062)
T KOG1912|consen  240 PHWRNILFITFPRELLVFDLEYECCL-AVVPIER------GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK  312 (1062)
T ss_pred             hhhhceEEEEeccceEEEcchhhcee-EEEEecc------CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence            87777777777888999999866543 2333332      3344456666542 57889999999999975432222211


Q ss_pred             c-----------------CCCCCeEEEEEecC-CCEEEEEeCCccEEEEeCCCCCcCCC
Q 006424          458 L-----------------PKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSS  498 (645)
Q Consensus       458 ~-----------------~~~~~i~~v~~sp~-~~~l~t~s~dg~I~iwd~~~~~~~~~  498 (645)
                      .                 .....+......|. ...++.--.+|.+.+|.+.++.....
T Consensus       313 ~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~  371 (1062)
T KOG1912|consen  313 PNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLD  371 (1062)
T ss_pred             cchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcc
Confidence            0                 01111122222343 33344444688899999987754433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=9.1e-08  Score=98.63  Aligned_cols=249  Identities=15%  Similarity=0.233  Sum_probs=168.6

Q ss_pred             ccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424          187 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  266 (645)
Q Consensus       187 ~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (645)
                      .+.+..-++|.||.+.|.-+.|+.+.+.|-|...+|.|.+|-+-++....                              
T Consensus        58 ~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E------------------------------  107 (1189)
T KOG2041|consen   58 ASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE------------------------------  107 (1189)
T ss_pred             ccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHH------------------------------
Confidence            34555778899999999999999999999999999999999887642210                              


Q ss_pred             ecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEE
Q 006424          267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s  345 (645)
                                   ...-....+.|.+++|+.+| .++..-.||.|.+=.++.++....--.......+.|++ |...++.
T Consensus       108 -------------EMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~-D~~~~Lf  173 (1189)
T KOG2041|consen  108 -------------EMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSE-DLEQALF  173 (1189)
T ss_pred             -------------HHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecc-cHHHHHh
Confidence                         01111245678899999887 78888888888877666443322111122345788999 8888888


Q ss_pred             EeCCCcEEEEeCCCCc-------E-EE----eeccCCCeEEEEEc--------cCCCEEEEEecCCeEEEEEecCCceee
Q 006424          346 GSIDGKVRIWGVCEKR-------V-VD----WADVRDVISAICYI--------PDGKGFIVGSITGTCHFYKASGNDLKL  405 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~-------~-~~----~~~~~~~v~~l~~s--------p~g~~l~~g~~dg~i~iwd~~~~~~~~  405 (645)
                      +-.+|.+.+||....-       + +.    +...+..+-.++|.        |+...++++...|.+.+..-.+...+.
T Consensus       174 ~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv  253 (1189)
T KOG2041|consen  174 KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV  253 (1189)
T ss_pred             hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence            8889999999986521       1 11    12223345666663        477899999999999987665554433


Q ss_pred             eEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC---------CeEEEEECC-cceeeEeecCCCCCeEEEEEecCCCE
Q 006424          406 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---------SKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKH  475 (645)
Q Consensus       406 ~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d---------g~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp~~~~  475 (645)
                      .   +..     +..+..+.|+++| ..|++++.+         +.|.+|..- ....+++.  ....|++++|-..|-.
T Consensus       254 v---~dt-----gm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv--pg~~It~lsWEg~gLr  322 (1189)
T KOG2041|consen  254 V---VDT-----GMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV--PGSCITGLSWEGTGLR  322 (1189)
T ss_pred             E---Eec-----ccEeecceecCCC-cEEEEccCcccccCccccceEEEeccchhheEEEec--CCceeeeeEEcCCceE
Confidence            2   111     2678899999998 788887765         356666632 34444544  5667888888766655


Q ss_pred             EEEEeCCccEEEEeCC
Q 006424          476 IISIGDDCRVYVWNYD  491 (645)
Q Consensus       476 l~t~s~dg~I~iwd~~  491 (645)
                      +|.+ -|+.|++=+++
T Consensus       323 iA~A-vdsfiyfanIR  337 (1189)
T KOG2041|consen  323 IAIA-VDSFIYFANIR  337 (1189)
T ss_pred             EEEE-ecceEEEEeec
Confidence            5544 35555554443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.90  E-value=7.3e-06  Score=79.86  Aligned_cols=221  Identities=17%  Similarity=0.190  Sum_probs=145.1

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceee
Q 006424          205 TLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  283 (645)
Q Consensus       205 ~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  283 (645)
                      +..|.+ ++.++++--..+.|..|+..++..                                              ..+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~----------------------------------------------~~~   37 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV----------------------------------------------EVI   37 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE----------------------------------------------EEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE----------------------------------------------EEE
Confidence            567887 677777777788999999876321                                              112


Q ss_pred             ccCccCeEEEEEc-CCCeEEEEeCCCcEEEEecCCCeEEEEec------CCCcEEEEEEeeCCCCEEEEEeCC-------
Q 006424          284 HGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSID-------  349 (645)
Q Consensus       284 ~~h~~~V~~l~~s-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~------~~~~v~~l~~~p~~~~~l~s~s~d-------  349 (645)
                      ... . ...+++. +++.++.+..++ +.++|..+++......      .....+.+++.| ++++.++....       
T Consensus        38 ~~~-~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~  113 (246)
T PF08450_consen   38 DLP-G-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGID  113 (246)
T ss_dssp             ESS-S-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGG
T ss_pred             ecC-C-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCcccccc
Confidence            211 1 6666776 678777777755 4555998886654443      235788999999 89877776643       


Q ss_pred             -CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEE-EecCCeEEEEEecCCceeee-EEeeccccccCCCCeEEEEE
Q 006424          350 -GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       350 -g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~-g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~  426 (645)
                       |.|..++.. ++.......-...+.++|+|+++.|++ -+..+.|..|++........ ...+.. ........-.+++
T Consensus       114 ~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~g~pDG~~v  191 (246)
T PF08450_consen  114 PGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-FPGGPGYPDGLAV  191 (246)
T ss_dssp             SEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE--SSSSCEEEEEEE
T ss_pred             ccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-cCCCCcCCCcceE
Confidence             557888877 666555555667899999999997765 46678899999975443111 111111 0111134778999


Q ss_pred             cCCCCcEEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEEe-cCCCEEEEEe
Q 006424          427 SRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFT-TTGKHIISIG  480 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~s-p~~~~l~t~s  480 (645)
                      ..+| ++.++....+.|.++|... ....+..  ....+++++|. ++.+.|+..+
T Consensus       192 D~~G-~l~va~~~~~~I~~~~p~G~~~~~i~~--p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  192 DSDG-NLWVADWGGGRIVVFDPDGKLLREIEL--PVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             BTTS--EEEEEETTTEEEEEETTSCEEEEEE---SSSSEEEEEEESTTSSEEEEEE
T ss_pred             cCCC-CEEEEEcCCCEEEEECCCccEEEEEcC--CCCCEEEEEEECCCCCEEEEEe
Confidence            9998 7777778899999999763 3333444  33489999994 6766665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.90  E-value=8e-07  Score=92.69  Aligned_cols=186  Identities=10%  Similarity=-0.020  Sum_probs=115.1

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeE----
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS----  373 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~----  373 (645)
                      ++.++.++.++.+..+|..+|+.+........+.+.-..  .++.++.++.++.++.||.++++.+-.........    
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~  182 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG  182 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence            468888899999999999999988777644444332222  24567777889999999999988765433322211    


Q ss_pred             --EEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc-CCCC---e-EEEEEcCCCCcEEEEEECCCeEEEE
Q 006424          374 --AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT-SGNK---I-TGIQFSRDESQRIMITSEDSKLRIL  446 (645)
Q Consensus       374 --~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~---i-~~i~~s~~g~~~l~~~s~dg~I~iw  446 (645)
                        +...  .+..++++..+|.+..+|..++..... ......... ....   + ....+. +  ..+++++.+|.++.+
T Consensus       183 ~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~-~~~~~~~g~~~~~~~~~~~~~p~~~-~--~~vy~~~~~g~l~a~  256 (377)
T TIGR03300       183 SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWE-QRVALPKGRTELERLVDVDGDPVVD-G--GQVYAVSYQGRVAAL  256 (377)
T ss_pred             CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeee-eccccCCCCCchhhhhccCCccEEE-C--CEEEEEEcCCEEEEE
Confidence              1111  234678888899999999987765322 111100000 0000   0 011111 2  478888889999999


Q ss_pred             ECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424          447 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  495 (645)
Q Consensus       447 d~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~  495 (645)
                      |..+.........  ......  ..++..++.++.||.++.+|..+++.
T Consensus       257 d~~tG~~~W~~~~--~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~  301 (377)
T TIGR03300       257 DLRSGRVLWKRDA--SSYQGP--AVDDNRLYVTDADGVVVALDRRSGSE  301 (377)
T ss_pred             ECCCCcEEEeecc--CCccCc--eEeCCEEEEECCCCeEEEEECCCCcE
Confidence            9875544443321  111122  23567888888999999999988743

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.90  E-value=5.3e-07  Score=102.50  Aligned_cols=242  Identities=11%  Similarity=0.198  Sum_probs=157.2

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      ..+.|.++.|-++..-|+.+..+|.|.+.......                                          +..
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~------------------------------------------~~~  111 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDP------------------------------------------DED  111 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC------------------------------------------CCc
Confidence            45789999999999999999999999998332100                                          012


Q ss_pred             CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC---------------CCeEE--------EEe----------
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---------------CNQCL--------NVF----------  324 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~---------------~~~~~--------~~~----------  324 (645)
                      .+.....-...|.+++||||+ .|+..+.++++.+-+-.               ..+.+        ..|          
T Consensus       112 ~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~  191 (928)
T PF04762_consen  112 EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAAR  191 (928)
T ss_pred             eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhh
Confidence            233333456789999999997 77778878888775311               00111        111          


Q ss_pred             ---------------cCCCcEEEEEEeeCCCCEEEEEeC---C---CcEEEEeCCCCcEEEe-eccCCCeEEEEEccCCC
Q 006424          325 ---------------DHHNYVTCVQFNPIDDNYFISGSI---D---GKVRIWGVCEKRVVDW-ADVRDVISAICYIPDGK  382 (645)
Q Consensus       325 ---------------~~~~~v~~l~~~p~~~~~l~s~s~---d---g~i~vwd~~~~~~~~~-~~~~~~v~~l~~sp~g~  382 (645)
                                     ...+.-..++|-. ||.++|+.+.   .   +.++||+-+ |.+... ....+--.+++|.|.|+
T Consensus       192 ~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~  269 (928)
T PF04762_consen  192 QLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN  269 (928)
T ss_pred             hccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC
Confidence                           0112345678988 9999998875   2   579999976 554442 23334456789999999


Q ss_pred             EEEEEec---CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc----eeeE
Q 006424          383 GFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV----IHKF  455 (645)
Q Consensus       383 ~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~----~~~~  455 (645)
                      ++|+...   ...|.+|.-++.+..  .+.+..  ......|..+.|++++ ..|+....|. |.+|-..+.    .+.+
T Consensus       270 lIA~~q~~~~~~~VvFfErNGLrhg--eF~l~~--~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei  343 (928)
T PF04762_consen  270 LIASSQRLPDRHDVVFFERNGLRHG--EFTLRF--DPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEI  343 (928)
T ss_pred             EEEEEEEcCCCcEEEEEecCCcEee--eEecCC--CCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEE
Confidence            9998764   346777776554332  222221  1224678999999997 7888877655 999987642    2333


Q ss_pred             eecCCCCCeEEEEEecCC-CEEEEEeCCccEEEEeCC
Q 006424          456 KGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       456 ~~~~~~~~i~~v~~sp~~-~~l~t~s~dg~I~iwd~~  491 (645)
                      ... ....+..+.|+|.. ..|...+.+|.+..+++.
T Consensus       344 ~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~  379 (928)
T PF04762_consen  344 RFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA  379 (928)
T ss_pred             Ecc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence            322 23345559999964 457777777887766653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.90  E-value=1.1e-08  Score=95.42  Aligned_cols=245  Identities=18%  Similarity=0.258  Sum_probs=154.7

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      ..+.|+++.|...|.||++|...|+|.+|.-.... .+                                       +.+
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~c---------------------------------------eyk   64 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GC---------------------------------------EYK   64 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeeccccc-cc---------------------------------------chh
Confidence            34569999999999999999999999999765422 00                                       011


Q ss_pred             CceeeccC------------ccCeEEEEEcCC-C--eEEEEeCCCcEEEEecCCCeE--EEEecC--------CCcEEEE
Q 006424          279 PLQELHGH------------KGDVLDLAWSNS-N--YLLSCSMDKTVRMWQVGCNQC--LNVFDH--------HNYVTCV  333 (645)
Q Consensus       279 ~~~~l~~h------------~~~V~~l~~s~~-~--~l~s~s~dg~I~iwd~~~~~~--~~~~~~--------~~~v~~l  333 (645)
                      ....+++|            ...|..+.|..+ +  .++..+.|.+|++|.+.....  +..-..        .+++++.
T Consensus        65 f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~  144 (460)
T COG5170          65 FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST  144 (460)
T ss_pred             hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCH
Confidence            12223333            356788888754 3  677888999999999864422  111111        1111110


Q ss_pred             ------EEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424          334 ------QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK  407 (645)
Q Consensus       334 ------~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~  407 (645)
                            ..+.  ...++++            ....+....|...+++++|+.|...++++ .|=.|.+|++.-.......
T Consensus       145 ~~l~lprls~--hd~iiaa------------~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnI  209 (460)
T COG5170         145 KELLLPRLSE--HDEIIAA------------KPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNI  209 (460)
T ss_pred             HHhhcccccc--cceEEEe------------ccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEE
Confidence                  1111  0111111            11112234577789999999888777655 5778999998765554444


Q ss_pred             Eeeccccc-cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc------eeeEee----c------CCCCCeEEEEEe
Q 006424          408 VDFHDRKK-TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV------IHKFKG----L------PKSGSQMSASFT  470 (645)
Q Consensus       408 ~~~~~~~~-~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~------~~~~~~----~------~~~~~i~~v~~s  470 (645)
                      +....+.. .-...|++..|+|.....+.-++..|.|++-|+++.      ...+..    .      .-...|..+.|+
T Consensus       210 VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs  289 (460)
T COG5170         210 VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFS  289 (460)
T ss_pred             EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEc
Confidence            44333211 113468899999987788888999999999998721      111111    0      113467889999


Q ss_pred             cCCCEEEEEeCCccEEEEeCCCCCcCCCc
Q 006424          471 TTGKHIISIGDDCRVYVWNYDELCFPSSK  499 (645)
Q Consensus       471 p~~~~l~t~s~dg~I~iwd~~~~~~~~~~  499 (645)
                      ++|+++++-+ =-+|+|||++..+.+...
T Consensus       290 ~ngryIlsRd-yltvkiwDvnm~k~pikT  317 (460)
T COG5170         290 DNGRYILSRD-YLTVKIWDVNMAKNPIKT  317 (460)
T ss_pred             CCCcEEEEec-cceEEEEecccccCCcee
Confidence            9999998864 468999999987655443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.87  E-value=3.5e-07  Score=93.02  Aligned_cols=183  Identities=16%  Similarity=0.203  Sum_probs=142.3

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEEec----CCCcEEEEEEe------e-------------CCCCEEEEEeCCCcEEEEe
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFN------P-------------IDDNYFISGSIDGKVRIWG  356 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~~~----~~~~v~~l~~~------p-------------~~~~~l~s~s~dg~i~vwd  356 (645)
                      +++..+.||.+++||...++....|.    ..+..++..|.      |             .+...++-|...|.|.+|+
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys   86 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS   86 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence            88999999999999999998887774    34455555553      1             1445788888999999999


Q ss_pred             CCCCcEEEe---eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424          357 VCEKRVVDW---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  433 (645)
Q Consensus       357 ~~~~~~~~~---~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~  433 (645)
                      +..+++...   ..|.+.|.++.++.+-..|.+++.|+.+..|+........ .+...      ...+.+++.+||| ..
T Consensus        87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~-~~~~~------~~~~~sl~is~D~-~~  158 (541)
T KOG4547|consen   87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR-IWKEQ------KPLVSSLCISPDG-KI  158 (541)
T ss_pred             ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee-eeccC------CCccceEEEcCCC-CE
Confidence            999988763   4688999999999999999999999999999998765432 22222      2578899999997 67


Q ss_pred             EEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecC-----CCEEEEE-eCCccEEEEeCCC
Q 006424          434 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-----GKHIISI-GDDCRVYVWNYDE  492 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~-----~~~l~t~-s~dg~I~iwd~~~  492 (645)
                      +++++  +.|++||+.+........+|.++|.++.|..+     |.++.++ ..+.-|.+|-+..
T Consensus       159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            77776  57999998865555555559999999999877     6776654 3466788887665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.86  E-value=2.6e-06  Score=79.74  Aligned_cols=189  Identities=17%  Similarity=0.204  Sum_probs=113.7

Q ss_pred             cCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe--------cCCCcEEEEEEeeCC-----CCEEEEEeCCCcEE
Q 006424          288 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--------DHHNYVTCVQFNPID-----DNYFISGSIDGKVR  353 (645)
Q Consensus       288 ~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~--------~~~~~v~~l~~~p~~-----~~~l~s~s~dg~i~  353 (645)
                      ..=.-++|+||+ .|+.+...|+|+++|+..... ..+        .....|..+.|.+..     ...|++-..+|.++
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            345678999998 888899999999999974332 222        134567777776522     22566777788888


Q ss_pred             EEeCCCC---c---E--EEee-ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424          354 IWGVCEK---R---V--VDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       354 vwd~~~~---~---~--~~~~-~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                      -|-+..+   .   .  ..+. .....|.++.++|..++|++|+....      +...           .......+++-
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-----------s~a~~~GLtaW  185 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-----------SKASSCGLTAW  185 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-----------ccccccCceEE
Confidence            7775322   1   1  1122 24678999999999998888764322      0000           00001233333


Q ss_pred             EEcCCCCcEEEEEEC-CCe------EEEEECCcceeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424          425 QFSRDESQRIMITSE-DSK------LRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  495 (645)
Q Consensus       425 ~~s~~g~~~l~~~s~-dg~------I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~  495 (645)
                      ..-.+.+.+..+.+. |+.      ..+|.+-. ...+.. ......|..|..||||+.||+...+|.|.+|++.+...
T Consensus       186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             EEcCCCCcEEEccccCccccccccccceeeccc-eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence            333332223222222 221      12222221 111111 23567899999999999999999999999999988743

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.85  E-value=1.7e-06  Score=90.33  Aligned_cols=202  Identities=11%  Similarity=0.133  Sum_probs=127.0

Q ss_pred             CCCceeeccCccCeEEEEEcCCC-e-EEEEeCC---CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEE-EeCC-
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSN-Y-LLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSID-  349 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~-~-l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s-~s~d-  349 (645)
                      +...+.+... +......|+|++ . ++..+.+   ..|.++|+.+++........+......|+| |++.++. .+.+ 
T Consensus       178 g~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g  255 (419)
T PRK04043        178 LTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKG  255 (419)
T ss_pred             CCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCC
Confidence            3333434333 377889999997 3 5544443   568999999888766666666677788999 8876654 3333 


Q ss_pred             -CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          350 -GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       350 -g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                       ..|.++|+.++....+..+........|+|||+.|+..+. .|  .|+++|+.++...  .+...+      ..  ...
T Consensus       256 ~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~--rlt~~g------~~--~~~  325 (419)
T PRK04043        256 QPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE--QVVFHG------KN--NSS  325 (419)
T ss_pred             CcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE--eCccCC------Cc--Cce
Confidence             4688889988887776665554456789999998777664 33  5777777665542  121211      11  248


Q ss_pred             EcCCCCcEEEEEECC--------CeEEEEECCcce-eeEeecCCCCCeEEEEEecCCCEEEEEeCC---ccEEEEeCCCC
Q 006424          426 FSRDESQRIMITSED--------SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDEL  493 (645)
Q Consensus       426 ~s~~g~~~l~~~s~d--------g~I~iwd~~~~~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d---g~I~iwd~~~~  493 (645)
                      |+|+|..++++....        ..|.+.|+.... ..+..   ........|+|||+.|+..+.+   ..+.+.+++..
T Consensus       326 ~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        326 VSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA---NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             ECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC---CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            999995444444332        367888865332 22222   1233357899999988776543   24666666554

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.85  E-value=2.1e-08  Score=103.66  Aligned_cols=244  Identities=16%  Similarity=0.238  Sum_probs=162.7

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424          200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  279 (645)
Q Consensus       200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (645)
                      .+.+.++..+|.|+-+|.++.-| +.+-|+...                                            ..+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p--------------------------------------------~~p   58 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDP--------------------------------------------FTP   58 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCC--------------------------------------------CCC
Confidence            45688999999999999998877 556676651                                            222


Q ss_pred             ceeec-cCccCeEEEEEcCC---CeEEEEeCCCcEEEEecCC--CeEEE--EecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          280 LQELH-GHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGC--NQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       280 ~~~l~-~h~~~V~~l~~s~~---~~l~s~s~dg~I~iwd~~~--~~~~~--~~~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                      .+-+. -..-.|-.+.|++.   .+-+.......-.+|++..  .+.+.  ..+|...|+.+.|+|.....+++++.|..
T Consensus        59 pr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~  138 (1081)
T KOG0309|consen   59 PRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTY  138 (1081)
T ss_pred             ceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccccc
Confidence            22222 11234566777754   2333444445566888742  23333  33688999999999988899999999999


Q ss_pred             EEEEeCCCCcE--EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          352 VRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       352 i~vwd~~~~~~--~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      +..||+++...  ..+......-..+.|+.....+.+.+....|.+||++.+..+...+.-      |...|..+.|..-
T Consensus       139 vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~------~vs~vn~~~fnr~  212 (1081)
T KOG0309|consen  139 VHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG------HVSSVNSIDFNRF  212 (1081)
T ss_pred             ceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc------cceeeehHHHhhh
Confidence            99999998543  334555667788999987777777888899999999987766543322      3467888888765


Q ss_pred             CCcEEEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEecCCCEEEE--EeCCccEEEEeCCCCC
Q 006424          430 ESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIIS--IGDDCRVYVWNYDELC  494 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp~~~~l~t--~s~dg~I~iwd~~~~~  494 (645)
                      -...+.+.+.|++|+.||..+...... ......+|..-.+-|-|+-..+  --.+..+.+++.++..
T Consensus       213 ~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d  280 (1081)
T KOG0309|consen  213 KYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD  280 (1081)
T ss_pred             hhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchh
Confidence            446789999999999999664322221 1223456677677775542222  2223356666665543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.84  E-value=1.5e-06  Score=85.89  Aligned_cols=246  Identities=10%  Similarity=0.137  Sum_probs=159.7

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCC-cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDG-VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      +|.+.|.-..+..+++-++.|..|| .+-|+|..++                                            
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--------------------------------------------  392 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--------------------------------------------  392 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------------------------------------------
Confidence            5777788888888888888888888 7888887653                                            


Q ss_pred             CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC----
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG----  350 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg----  350 (645)
                        .+..+.+.-+.|.++..+++| +++.+.....+.+.|++++.....-. ..+-|+.+.|+| +++.+|-+-.+|    
T Consensus       393 --e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq  469 (668)
T COG4946         393 --EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQ  469 (668)
T ss_pred             --eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeee
Confidence              345566677889999999998 67777777899999999987654433 556899999999 999999887665    


Q ss_pred             cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-------CCeEEEEEecCCceeeeEEeeccc----------
Q 006424          351 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-------TGTCHFYKASGNDLKLEKVDFHDR----------  413 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-------dg~i~iwd~~~~~~~~~~~~~~~~----------  413 (645)
                      .|+++|+.+++..........-.+-+|.|++++|.--+.       |..+.-+....-..+.......+.          
T Consensus       470 ~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~  549 (668)
T COG4946         470 SIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDE  549 (668)
T ss_pred             eEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchh
Confidence            699999999999887777766777889999998776542       333322222111111110000000          


Q ss_pred             cccC---------CCCeEEEEEcCCCCcEEEEEECCCeEEEEECC---------------cceeeEee-----cCCCCCe
Q 006424          414 KKTS---------GNKITGIQFSRDESQRIMITSEDSKLRILDGV---------------DVIHKFKG-----LPKSGSQ  464 (645)
Q Consensus       414 ~~~~---------~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~---------------~~~~~~~~-----~~~~~~i  464 (645)
                      ....         ...+.-+-..+ +....+++-.+|.|.++...               ..+..+..     ..-...+
T Consensus       550 ~~~ea~e~dle~ie~r~eP~pVee-~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nv  628 (668)
T COG4946         550 ANSEAGEVDLEGIEDRVEPFPVEE-GDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNV  628 (668)
T ss_pred             cCccccceehhhhcccccccccCc-cceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHHhccc
Confidence            0000         00000011111 12345555666666665421               00111111     1123467


Q ss_pred             EEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          465 MSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       465 ~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      .++..|+|++.+.. -.||.++++|++.
T Consensus       629 ss~rlS~D~s~ilv-k~d~kl~~f~vek  655 (668)
T COG4946         629 SSFRLSSDGSKILV-KLDGKLRLFDVEK  655 (668)
T ss_pred             ceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence            89999999999988 7899999999986

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.80  E-value=1.9e-06  Score=90.10  Aligned_cols=241  Identities=14%  Similarity=0.175  Sum_probs=162.2

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      .-.++.|+|.| ++|-|+.. .|.+-|..+                                             .+.++
T Consensus        17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s---------------------------------------------~q~iq   49 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRS---------------------------------------------LQLIQ   49 (1062)
T ss_pred             cccccccCccc-eEEEecCc-eEEEEehhh---------------------------------------------hhhhh
Confidence            35678899888 67777654 577777765                                             56678


Q ss_pred             eeccCccCeEEEEEcC----------C--C-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeC--CC-CEEE
Q 006424          282 ELHGHKGDVLDLAWSN----------S--N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI--DD-NYFI  344 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~----------~--~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~--~~-~~l~  344 (645)
                      .+.-|...|+.+.|.|          .  . .|+++...|.|.+||...+..+..+. +.+++..++|-|.  +. ..|+
T Consensus        50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll  129 (1062)
T KOG1912|consen   50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL  129 (1062)
T ss_pred             ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence            8888999999999974          1  1 47778888999999999888888776 6678999999772  22 4566


Q ss_pred             EEeCCCcEEEEeCCCCcEEEee-ccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCce---eeeEEeeccccc----
Q 006424          345 SGSIDGKVRIWGVCEKRVVDWA-DVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDL---KLEKVDFHDRKK----  415 (645)
Q Consensus       345 s~s~dg~i~vwd~~~~~~~~~~-~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~~----  415 (645)
                      .-....++.+|+..+|+..--. .......|+.+.| |.+.+..-+..|.+.+-+.-....   +.+.+.......    
T Consensus       130 aIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~  209 (1062)
T KOG1912|consen  130 AIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH  209 (1062)
T ss_pred             EecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh
Confidence            6666789999999988876543 3444566689998 667777777788777766532221   122221111100    


Q ss_pred             ---------cCCC------C---eEEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecC--C
Q 006424          416 ---------TSGN------K---ITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT--G  473 (645)
Q Consensus       416 ---------~~~~------~---i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~--~  473 (645)
                               .+..      -   ...++|+|.- +.++-......+.++|++  ........  ..+.+.-+.+-|+  .
T Consensus       210 lere~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prellv~dle~~~~l~vvpi--er~~akfv~vlP~~~r  286 (1062)
T KOG1912|consen  210 LERETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPRELLVFDLEYECCLAVVPI--ERGGAKFVDVLPDPRR  286 (1062)
T ss_pred             hhhhhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccceEEEcchhhceeEEEEe--ccCCcceeEeccCCCc
Confidence                     0000      0   1134577874 445555667789999976  33333333  3444445555554  5


Q ss_pred             CEEEEEeCCccEEEEeCCC
Q 006424          474 KHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       474 ~~l~t~s~dg~I~iwd~~~  492 (645)
                      ..|++.-.||.+.+|-.+.
T Consensus       287 d~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  287 DALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ceEEEEecCCeEEEEEeec
Confidence            6799999999999998765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.79  E-value=1.8e-06  Score=100.18  Aligned_cols=199  Identities=16%  Similarity=0.123  Sum_probs=129.4

Q ss_pred             EEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEEecC---------------CCcEEEEEEeeCCCCEEEEEe-CCCcE
Q 006424          291 LDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDH---------------HNYVTCVQFNPIDDNYFISGS-IDGKV  352 (645)
Q Consensus       291 ~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~~~~---------------~~~v~~l~~~p~~~~~l~s~s-~dg~i  352 (645)
                      ..+++++. + .+++-+.++.|+++|.. +..+..+..               -.....+++++ +++.|+++. .++.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence            35677753 5 56676778899999986 444433321               12357889998 777666554 45779


Q ss_pred             EEEeCCCCcEEEeecc-----------------CCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccc-
Q 006424          353 RIWGVCEKRVVDWADV-----------------RDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-  413 (645)
Q Consensus       353 ~vwd~~~~~~~~~~~~-----------------~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-  413 (645)
                      +++|+.++.+..+.+.                 -.....++++| ++..+++.+.++.|++||..+.....  +.-.+. 
T Consensus       649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~--~~G~G~~  726 (1057)
T PLN02919        649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV--FSGDGYE  726 (1057)
T ss_pred             EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE--EecCCcc
Confidence            9999988776554221                 12346799999 55556666778899999987654321  110000 


Q ss_pred             --------cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceee-Eee-c-------------------CCCCCe
Q 006424          414 --------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKG-L-------------------PKSGSQ  464 (645)
Q Consensus       414 --------~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~-~~~-~-------------------~~~~~i  464 (645)
                              ..........++++|+|..++++.+.++.|++||....... ..+ .                   ..-...
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence                    00011345679999998556677777899999997643211 110 0                   001134


Q ss_pred             EEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          465 MSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       465 ~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .+++++++|+.+++-+.+++|++||..++
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg  835 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATK  835 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence            68899999999888889999999998765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.78  E-value=2.1e-06  Score=89.73  Aligned_cols=190  Identities=9%  Similarity=0.014  Sum_probs=117.4

Q ss_pred             cEEEEEECCCCCE-EEEEeCC---CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          202 CIWTLKFSPDGRY-LASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       202 ~V~~l~fspdg~~-L~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .+....|||||+. ++..+.+   ..|.++|+.++..                                           
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-------------------------------------------  225 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-------------------------------------------  225 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-------------------------------------------
Confidence            7789999999984 6644443   4578888866321                                           


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eE-EEEeCC--CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC-C--
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YL-LSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-G--  350 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l-~s~s~d--g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d-g--  350 (645)
                         ..+....+......|+||| .+ ++.+.+  ..|.++|+.++.......+........|+| +++.|+..+.. +  
T Consensus       226 ---~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~  301 (419)
T PRK04043        226 ---EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYP  301 (419)
T ss_pred             ---EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCc
Confidence               2222234455667899997 44 444444  467788888777554444443344568999 88877666632 3  


Q ss_pred             cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC---------CeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424          351 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  421 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  421 (645)
                      .|++.|+.+++...+......  ...|+|+|+.++.....         ..|.+.|+.+.....  +...       ...
T Consensus       302 ~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~--LT~~-------~~~  370 (419)
T PRK04043        302 NIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR--LTAN-------GVN  370 (419)
T ss_pred             eEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE--CCCC-------CCc
Confidence            588889988887654433222  24899999988876653         267788877665321  1111       122


Q ss_pred             EEEEEcCCCCcEEEEEECCCe--EEEEECC
Q 006424          422 TGIQFSRDESQRIMITSEDSK--LRILDGV  449 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~dg~--I~iwd~~  449 (645)
                      ....|+|||...+++....+.  +.+.++.
T Consensus       371 ~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        371 QFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             CCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence            357899998544444433333  4455554

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.73  E-value=8.2e-08  Score=99.35  Aligned_cols=205  Identities=16%  Similarity=0.240  Sum_probs=138.2

Q ss_pred             ceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCe-EEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          280 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-CLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~-~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      ...+.||...|+.+.|+++.  .+++++.|..|..||+++.. ++..+. -......++|+..+++.+|+. ....|.+|
T Consensus       107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass-hg~~i~vw  185 (1081)
T KOG0309|consen  107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS-HGNDIFVW  185 (1081)
T ss_pred             EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc-cCCceEEE
Confidence            34678999999999999875  89999999999999998754 344443 334567789998677766654 45779999


Q ss_pred             eCCCCc--EEEeeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424          356 GVCEKR--VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       356 d~~~~~--~~~~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                      |++.+.  +....+|-..|+.+.|+.- ...+.+.+.||+|++||........+..      .....+|..-.+.|-|..
T Consensus       186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~------vtt~~piw~~r~~Pfg~g  259 (1081)
T KOG0309|consen  186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT------VTTNFPIWRGRYLPFGEG  259 (1081)
T ss_pred             eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee------ccccCcceeccccccCce
Confidence            998764  4456678888888888763 3467888999999999987554322211      111255666666665432


Q ss_pred             EEEEEE-CCCeEEE---------E---ECCcceeeEeecCCCCCeEEEEEec--------C--CCEEEEEeCCccEEEEe
Q 006424          433 RIMITS-EDSKLRI---------L---DGVDVIHKFKGLPKSGSQMSASFTT--------T--GKHIISIGDDCRVYVWN  489 (645)
Q Consensus       433 ~l~~~s-~dg~I~i---------w---d~~~~~~~~~~~~~~~~i~~v~~sp--------~--~~~l~t~s~dg~I~iwd  489 (645)
                      +.+.-. .+..+-+         |   |..+.+..|.+  |...|...-|-.        |  .-.|+|-|.|..+++|.
T Consensus       260 ~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G--H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp  337 (1081)
T KOG0309|consen  260 YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG--HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP  337 (1081)
T ss_pred             eEeccccCCeeeeeccccchhhhhccccCCcceeeecC--cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence            222211 1122222         2   23456666766  666666555522        1  23699999999999999


Q ss_pred             CCCC
Q 006424          490 YDEL  493 (645)
Q Consensus       490 ~~~~  493 (645)
                      +.+.
T Consensus       338 I~~~  341 (1081)
T KOG0309|consen  338 IDSQ  341 (1081)
T ss_pred             ccHH
Confidence            8753

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=2.2e-08  Score=99.99  Aligned_cols=263  Identities=14%  Similarity=0.213  Sum_probs=161.7

Q ss_pred             CccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCC
Q 006424          170 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA  249 (645)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  249 (645)
                      ++++.++.|.-+..-.+.......-+++.|+.+|.++.|-.+-++++++  ||-|.+||.--+......           
T Consensus       754 SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~-----------  820 (1034)
T KOG4190|consen  754 SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQM-----------  820 (1034)
T ss_pred             cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhh-----------
Confidence            3344444444444444444444667788999999999999998888865  778999997543221100           


Q ss_pred             CCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCCe-EEEEeCCCcEEEEecCCCeEEEEec---
Q 006424          250 KEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFD---  325 (645)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~---  325 (645)
                                                ..   ..-.+-.+.|.|+.--.... ++-|+...+|+++|.+.+.....+.   
T Consensus       821 --------------------------~d---apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn  871 (1034)
T KOG4190|consen  821 --------------------------ED---APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN  871 (1034)
T ss_pred             --------------------------hc---CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc
Confidence                                      00   00112223344443212233 4445788999999999887766553   


Q ss_pred             ---CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEE-EEecC
Q 006424          326 ---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHF-YKASG  400 (645)
Q Consensus       326 ---~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~i-wd~~~  400 (645)
                         .+..+++++..| .|+.++.+-.+|.|.+.|.++|+++. +.........++ .|..+.++....|.++.+ |-...
T Consensus       872 a~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  872 APGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             CCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence               345789999999 99999999999999999999999765 333332222232 255566666667777777 75544


Q ss_pred             CceeeeEEeeccccccCCCCeEEEEEc-CCCCcEEEEEECCCeEEEEECC------cceeeEeecCCCCCeEEEEEecCC
Q 006424          401 NDLKLEKVDFHDRKKTSGNKITGIQFS-RDESQRIMITSEDSKLRILDGV------DVIHKFKGLPKSGSQMSASFTTTG  473 (645)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~i~~i~~s-~~g~~~l~~~s~dg~I~iwd~~------~~~~~~~~~~~~~~i~~v~~sp~~  473 (645)
                      +....     .....  ..+   ..|- .-| .-+++......+.+|.-.      ..+..++.....+..++++.-|-.
T Consensus       950 gimh~-----q~kpp--pep---ahflqsvg-pSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN 1018 (1034)
T KOG4190|consen  950 GIMHL-----QDKPP--PEP---AHFLQSVG-PSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLN 1018 (1034)
T ss_pred             Ceeee-----ccCCC--Ccc---hhhhhccC-ceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecccc
Confidence            33211     11000  001   1111 123 357777777788888522      222333344456677888888877


Q ss_pred             CEEEEEeCCccEEE
Q 006424          474 KHIISIGDDCRVYV  487 (645)
Q Consensus       474 ~~l~t~s~dg~I~i  487 (645)
                      .-+..|.+.|.|.+
T Consensus      1019 ~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1019 CAFLAGNEHGAIAL 1032 (1034)
T ss_pred             chhhccCCCCceee
Confidence            77888888888765

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.67  E-value=6.2e-08  Score=91.81  Aligned_cols=148  Identities=15%  Similarity=0.258  Sum_probs=114.2

Q ss_pred             EEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424          344 ISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  423 (645)
Q Consensus       344 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (645)
                      ++.+.+..|-+-|+.++-...+. ..+.|.++.|...++++..|+..|.|..+|++....-..   ...+.-.|...|++
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~---~~a~rlyh~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG---WCAQRLYHDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC---cceEEEEcCcchhh
Confidence            56666788999999988776665 677899999999899999999999999999987622110   01111123578999


Q ss_pred             EEEcC-CCCcEEEEEECCCeEEEEECCc--c---eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424          424 IQFSR-DESQRIMITSEDSKLRILDGVD--V---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  496 (645)
Q Consensus       424 i~~s~-~g~~~l~~~s~dg~I~iwd~~~--~---~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~  496 (645)
                      +..-. ++ ++|++.+.+|+|++||.+.  .   +..+.+|.+...-.-+...+....++++++|...+||.++.+...
T Consensus       304 lq~Lq~s~-q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  304 LQILQFSQ-QKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             hhhhcccc-ceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence            88776 44 7999999999999999872  2   567777666655566667788889999999999999999988543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.66  E-value=3e-07  Score=89.27  Aligned_cols=160  Identities=14%  Similarity=0.159  Sum_probs=115.7

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      ....+..+|++++||.+..++...++++......                                         .+...
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~-----------------------------------------~kl~~  102 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKG-----------------------------------------AKLLD  102 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCc-----------------------------------------ceeee
Confidence            3556677889999999988888778777652210                                         01111


Q ss_pred             ee--ccCccCeEEEEEcCCCe-EEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424          282 EL--HGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  358 (645)
Q Consensus       282 ~l--~~h~~~V~~l~~s~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  358 (645)
                      ..  ..-...+..+....... .-.++....+.+|....+.+...++|-+.++.++|+| |+++++++..|..|++-...
T Consensus       103 ~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~yp  181 (390)
T KOG3914|consen  103 VSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYP  181 (390)
T ss_pred             EeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecC
Confidence            11  11223344444333232 2244556677778777788888889999999999999 99999999999999998876


Q ss_pred             CCcEEE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee
Q 006424          359 EKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  404 (645)
Q Consensus       359 ~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~  404 (645)
                      ..-.+.  ..+|...|..++.-+ +..|++|+.|+++++||+.+++..
T Consensus       182 a~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  182 ATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             cccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecccCCcc
Confidence            655443  578999999999876 456999999999999999988764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.64  E-value=3.1e-07  Score=83.94  Aligned_cols=196  Identities=11%  Similarity=0.185  Sum_probs=120.1

Q ss_pred             eEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEee---------CCCCEEEEEeCCCcEEEEeC
Q 006424          290 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNP---------IDDNYFISGSIDGKVRIWGV  357 (645)
Q Consensus       290 V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p---------~~~~~l~s~s~dg~i~vwd~  357 (645)
                      ++.+.+..+-.|+++..++.+......++.+....+   ..++..+++.+.         ..++-++++..||.+.+++.
T Consensus        39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~  118 (319)
T KOG4714|consen   39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST  118 (319)
T ss_pred             EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence            666666666678888888777776655554443322   111222222211         14567899999999999998


Q ss_pred             CCCcEEE--eeccCCCeEEEEEccCCCEEEEEe-----cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          358 CEKRVVD--WADVRDVISAICYIPDGKGFIVGS-----ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       358 ~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      +.-....  .......-.+.++...++.+.++.     .-+..+.|+++.......   ..   . ....|++++-+|..
T Consensus       119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~---~~---~-~~~~v~~l~~hp~q  191 (319)
T KOG4714|consen  119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP---SK---K-ALDAVTALCSHPAQ  191 (319)
T ss_pred             hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccc---cc---c-ccccchhhhCCccc
Confidence            7621111  000111111223333454444432     223455666653332111   00   0 12458999999987


Q ss_pred             CcEEEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCC
Q 006424          431 SQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      ...+++|+.||.+-+||.++...... ...|...+..+.|+| ++..|+++++||.+.-||-.+
T Consensus       192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            78889999999999999885422221 244889999999999 568999999999999999775

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.63  E-value=3.9e-07  Score=83.28  Aligned_cols=92  Identities=16%  Similarity=0.180  Sum_probs=70.6

Q ss_pred             cEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE--EeeccCCCeEEEEEcc-CCCEE
Q 006424          309 TVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV--DWADVRDVISAICYIP-DGKGF  384 (645)
Q Consensus       309 ~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~v~~l~~sp-~g~~l  384 (645)
                      ..+.|+++..+....- .....|.+++-+|...+++++|+.||.+-+||.+.....  .+..|+.++..+-|+| ++..|
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence            4556665533322211 233459999999977788899999999999999886433  2567899999999999 67799


Q ss_pred             EEEecCCeEEEEEecC
Q 006424          385 IVGSITGTCHFYKASG  400 (645)
Q Consensus       385 ~~g~~dg~i~iwd~~~  400 (645)
                      +++++||.+-.||..+
T Consensus       240 ft~sedGslw~wdas~  255 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAST  255 (319)
T ss_pred             eEecCCCcEEEEcCCC
Confidence            9999999999999875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.63  E-value=6.9e-08  Score=63.72  Aligned_cols=37  Identities=38%  Similarity=0.869  Sum_probs=35.0

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEE
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH  228 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd  228 (645)
                      +.+++++|.+.|++|+|+|++++|++|+.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4577999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.60  E-value=3.4e-08  Score=103.97  Aligned_cols=227  Identities=17%  Similarity=0.192  Sum_probs=152.6

Q ss_pred             ccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCC
Q 006424          183 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  262 (645)
Q Consensus       183 ~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (645)
                      +..-|+++...++++.|....+|++|+-+.++|+.|+..|.|+++++.+                               
T Consensus      1084 r~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s------------------------------- 1132 (1516)
T KOG1832|consen 1084 RQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS------------------------------- 1132 (1516)
T ss_pred             chhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-------------------------------
Confidence            3345688889999999999999999999999999999999999999987                               


Q ss_pred             cceeecCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCC-cEEEEecCC-CeEEEEecCCCcEEEEEEeeC
Q 006424          263 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDK-TVRMWQVGC-NQCLNVFDHHNYVTCVQFNPI  338 (645)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg-~I~iwd~~~-~~~~~~~~~~~~v~~l~~~p~  338 (645)
                                    +.......+|...|+-+.-+.+|  .|.+++... -..+|++.+ +...++|.   .-.++.|+. 
T Consensus      1133 --------------G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~---ed~~vkFsn- 1194 (1516)
T KOG1832|consen 1133 --------------GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD---EDKAVKFSN- 1194 (1516)
T ss_pred             --------------ccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc---ccceeehhh-
Confidence                          44456778899999999888777  444444444 578999853 44444443   345778886 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEe-----eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424          339 DDNYFISGSIDGKVRIWGVCEKRVVDW-----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  413 (645)
Q Consensus       339 ~~~~l~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  413 (645)
                      ....-+.|.......+||+.++..+..     ......-++..|+|+..+++-   ||  .+||.+........-.+.  
T Consensus      1195 ~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft-- 1267 (1516)
T KOG1832|consen 1195 SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFT-- 1267 (1516)
T ss_pred             hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhhe--
Confidence            444445555556789999998764431     222333477889998887763   44  589998764322211111  


Q ss_pred             cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424          414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI  479 (645)
Q Consensus       414 ~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~  479 (645)
                            .-..-.|+|.| ..++..+.     |||+++.......  ..-.-+.+.|...|..++..
T Consensus      1268 ------~~~~G~FHP~g-~eVIINSE-----IwD~RTF~lLh~V--P~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1268 ------DYGGGGFHPSG-NEVIINSE-----IWDMRTFKLLHSV--PSLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             ------ecccccccCCC-ceEEeech-----hhhhHHHHHHhcC--ccccceEEEeccCccchhhh
Confidence                  11123589998 66666653     8998743221111  12234677888888766543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.59  E-value=2e-07  Score=87.15  Aligned_cols=234  Identities=13%  Similarity=0.251  Sum_probs=140.9

Q ss_pred             CcEEEEEECCCCC--EEEEEeCCCcEEEEEcCCCceeeeE--------ecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          201 GCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKS--------FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       201 ~~V~~l~fspdg~--~L~sgs~Dg~I~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      ..|..+.|-.++.  .++..+.|++|++|.+.........        ..+.+..+.  ....+...........+    
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~--s~~~l~lprls~hd~ii----  159 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLT--STKELLLPRLSEHDEII----  159 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcC--CHHHhhcccccccceEE----
Confidence            3577888876543  5666678999999998753221110        001010000  00001110000000000    


Q ss_pred             CceeccCCCceee-ccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeE----EEEec-----CCCcEEEEEEeeCCC
Q 006424          271 EVFQIEESPLQEL-HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC----LNVFD-----HHNYVTCVQFNPIDD  340 (645)
Q Consensus       271 ~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~----~~~~~-----~~~~v~~l~~~p~~~  340 (645)
                           ...+.+.+ ..|...|.+++|+.+...+-.+.|-.|.+|+++-..-    +..-.     ...-|++..|+|...
T Consensus       160 -----aa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c  234 (460)
T COG5170         160 -----AAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC  234 (460)
T ss_pred             -----EeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc
Confidence                 12233333 4788999999999887555556778899999863221    11111     234588999999777


Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEEE-----------------eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce
Q 006424          341 NYFISGSIDGKVRIWGVCEKRVVD-----------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  403 (645)
Q Consensus       341 ~~l~s~s~dg~i~vwd~~~~~~~~-----------------~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~  403 (645)
                      +.+...+..|.|++-|++...+.-                 +.+....|..+.|+++|+++++-+ --++++||.+....
T Consensus       235 n~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~  313 (460)
T COG5170         235 NVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKN  313 (460)
T ss_pred             ceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccC
Confidence            888888889999999998533211                 122345688899999999988754 35899999998887


Q ss_pred             eeeEEeecccccc------CCCCe---EEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424          404 KLEKVDFHDRKKT------SGNKI---TGIQFSRDESQRIMITSEDSKLRILD  447 (645)
Q Consensus       404 ~~~~~~~~~~~~~------~~~~i---~~i~~s~~g~~~l~~~s~dg~I~iwd  447 (645)
                      ++..+.++.....      ....|   ..+.|+.+. ..+++|+..+..-+|-
T Consensus       314 pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp  365 (460)
T COG5170         314 PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYP  365 (460)
T ss_pred             CceeechHHHHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeeec
Confidence            7776655432111      01222   246777775 6788888776665554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.58  E-value=3.2e-05  Score=80.65  Aligned_cols=174  Identities=11%  Similarity=0.025  Sum_probs=108.3

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCC-----c------E-EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----Y------V-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  365 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----~------v-~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~  365 (645)
                      ++.++.+..++.+..+|.++|+.+.......     .      + ....+   .++.+++++.+|.++.||..+++....
T Consensus       190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~~~W~  266 (377)
T TIGR03300       190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGRVLWK  266 (377)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence            3577888889999999999998765442110     0      0 11112   345778888899999999999877654


Q ss_pred             eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEE
Q 006424          366 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI  445 (645)
Q Consensus       366 ~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~i  445 (645)
                      ..... .....  ..+..+++++.+|.+..+|..+++..........      ....+...  .+ ..+++++.+|.|++
T Consensus       267 ~~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~------~~~ssp~i--~g-~~l~~~~~~G~l~~  334 (377)
T TIGR03300       267 RDASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKY------RQLTAPAV--VG-GYLVVGDFEGYLHW  334 (377)
T ss_pred             eccCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccC------CccccCEE--EC-CEEEEEeCCCEEEE
Confidence            33222 11222  3567888889999999999987765432111111      11122222  23 48889999999999


Q ss_pred             EECCcceeeEeecCCCCCeE-EEEEecCCCEEEEEeCCccEEEE
Q 006424          446 LDGVDVIHKFKGLPKSGSQM-SASFTTTGKHIISIGDDCRVYVW  488 (645)
Q Consensus       446 wd~~~~~~~~~~~~~~~~i~-~v~~sp~~~~l~t~s~dg~I~iw  488 (645)
                      +|..+.........+...+. +..+ .+ +.|+.++.||.|+.|
T Consensus       335 ~d~~tG~~~~~~~~~~~~~~~sp~~-~~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       335 LSREDGSFVARLKTDGSGIASPPVV-VG-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             EECCCCCEEEEEEcCCCccccCCEE-EC-CEEEEEeCCceEEEe
Confidence            99775544444332332222 2222 23 458888899999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.3e-06  Score=85.85  Aligned_cols=286  Identities=16%  Similarity=0.150  Sum_probs=185.3

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      |.+.|+.+.-+ -.+++.+++.||.++.|.-..-.                                          .-.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is------------------------------------------GvE   44 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS------------------------------------------GVE   44 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCcc------------------------------------------cee
Confidence            88888877654 45699999999999999754310                                          012


Q ss_pred             CceeeccCccCeEEEEEcCCC-eEEEEeC-CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCC---EEE-EEeCCCcE
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN---YFI-SGSIDGKV  352 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~---~l~-s~s~dg~i  352 (645)
                      .+..+..|-+.|.+++.+-++ .+.|.+. |..++++|+++-..+..+........+.|....+.   .++ +.-.++.+
T Consensus        45 fVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i  124 (558)
T KOG0882|consen   45 FVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKI  124 (558)
T ss_pred             ehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCc
Confidence            345667889999999999888 5667677 99999999987766554443333333444331231   233 33457889


Q ss_pred             EEEeCCCCcE---EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC-ceeeeEEeeccc-------cccCCCCe
Q 006424          353 RIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDR-------KKTSGNKI  421 (645)
Q Consensus       353 ~vwd~~~~~~---~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~-------~~~~~~~i  421 (645)
                      .++|-....+   ..-.-|..+|..+.+++.+..+++....|.|.-|..... +.+...+.+.-.       ........
T Consensus       125 ~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p  204 (558)
T KOG0882|consen  125 FVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP  204 (558)
T ss_pred             EEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCc
Confidence            9999776442   234457889999999999999999999999999998741 111111111100       11123567


Q ss_pred             EEEEEcCCCCcEEEEEECCCeEEEEECCcc--eeeE---------------ee----------------cCCCCCeEEEE
Q 006424          422 TGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKF---------------KG----------------LPKSGSQMSAS  468 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~--~~~~---------------~~----------------~~~~~~i~~v~  468 (645)
                      +++.|+|+| ..+.+-+.|..|++++....  .+.+               ..                ......-+.+.
T Consensus       205 ts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~  283 (558)
T KOG0882|consen  205 TSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAV  283 (558)
T ss_pred             cceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeE
Confidence            899999998 78999999999999974311  0000               00                01223446788


Q ss_pred             EecCCCEEEEEeCCccEEEEeCCCCCcCCCc--------------------------ccCCcceeeeeecCCcEEEEecC
Q 006424          469 FTTTGKHIISIGDDCRVYVWNYDELCFPSSK--------------------------QKNSVRSCEHFFSEGVSVAVQWP  522 (645)
Q Consensus       469 ~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~--------------------------~~~~~~~~~~~~~~g~~~~v~~s  522 (645)
                      |+..|++|+-|+-=| |++.++.++......                          ..........+.++..+++.+|-
T Consensus       284 fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~k  362 (558)
T KOG0882|consen  284 FDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFK  362 (558)
T ss_pred             EcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeee
Confidence            999999999887554 677777665321100                          01122223346667777788888


Q ss_pred             CCCcccc
Q 006424          523 GIGTEQK  529 (645)
Q Consensus       523 ~~~~~l~  529 (645)
                      .+..+|+
T Consensus       363 k~rfylf  369 (558)
T KOG0882|consen  363 KNRFYLF  369 (558)
T ss_pred             cceEEEE
Confidence            7777776

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.54  E-value=4.2e-05  Score=74.06  Aligned_cols=190  Identities=16%  Similarity=0.151  Sum_probs=121.1

Q ss_pred             CCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe-eccC----CC
Q 006424          297 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-ADVR----DV  371 (645)
Q Consensus       297 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~----~~  371 (645)
                      .++.+++++.++.+..||..+|+.+..+.....+......  .+..+++++.++.++.+|..+++.... ....    ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            4568888899999999999999998887644433222222  456677777888999999999887664 2211    11


Q ss_pred             eEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc----CCCCeEEEEEcCCCCcEEEEEECCCe-EEEE
Q 006424          372 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT----SGNKITGIQFSRDESQRIMITSEDSK-LRIL  446 (645)
Q Consensus       372 v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~s~~g~~~l~~~s~dg~-I~iw  446 (645)
                      .........+..++++..++.+..+|+++++.... .........    ....+..-....++  .++.++.++. +.+ 
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~-  188 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK-YPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV-  188 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE-EESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE-
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEEEE-eecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE-
Confidence            22233333488899999999999999998876433 222211000    00112222233343  6777777775 555 


Q ss_pred             ECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424          447 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  495 (645)
Q Consensus       447 d~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~  495 (645)
                      |..+........  ...+.. ....++..|+.++.++.|..||+.+++.
T Consensus       189 d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  189 DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence            988766544332  222222 2456788888888999999999999854

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.53  E-value=0.00026  Score=68.90  Aligned_cols=187  Identities=14%  Similarity=0.107  Sum_probs=121.0

Q ss_pred             EEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec--
Q 006424          292 DLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD--  367 (645)
Q Consensus       292 ~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--  367 (645)
                      +..|.+ ++ ++++--..+.|..|+..++.... +.... ...+++...+ ..++.+.. +.+.++|..+++...+..  
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD-GRLYVADS-GGIAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT-SEEEEEET-TCEEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC-CEEEEEEc-CceEEEecCCCcEEEEeecc
Confidence            467887 56 45555568899999998876643 33333 6777787315 55555555 446666999887655433  


Q ss_pred             ----cCCCeEEEEEccCCCEEEEEecC--------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          368 ----VRDVISAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       368 ----~~~~v~~l~~sp~g~~l~~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                          .....+.+++.|+|++.++....        |.+..++.. ......   ...     -...+.++|+|++..+++
T Consensus        80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~---~~~-----~~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV---ADG-----LGFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE---EEE-----ESSEEEEEEETTSSEEEE
T ss_pred             CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE---ecC-----cccccceEECCcchheee
Confidence                23568899999999966665433        456666665 232221   111     145789999999855556


Q ss_pred             EEECCCeEEEEECCc--c----eeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          436 ITSEDSKLRILDGVD--V----IHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~--~----~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      +-+..+.|..++...  .    ...+.. ....+..-.++++.+|++.++.-..+.|.+++.+
T Consensus       151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            777889999998642  1    122222 2122347889999999988888889999999977

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.49  E-value=2.9e-06  Score=82.58  Aligned_cols=150  Identities=14%  Similarity=0.093  Sum_probs=102.2

Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEecCCCe----EEEEecCCCcEEEEEEeeCCCCEEEEEe---CCCcEEEEeCCCCcEEE
Q 006424          293 LAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDNYFISGS---IDGKVRIWGVCEKRVVD  364 (645)
Q Consensus       293 l~~s~~~-~l~s~s~dg~I~iwd~~~~~----~~~~~~~~~~v~~l~~~p~~~~~l~s~s---~dg~i~vwd~~~~~~~~  364 (645)
                      +..++++ +++.+..+....++++....    +...+.....-+++.|.. +......+.   ....+.+|....+....
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~~~~  146 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGRCEP  146 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccccCcch
Confidence            3445666 56666666666676664332    333333344445555554 344444433   34455556555578888


Q ss_pred             eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEE
Q 006424          365 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  444 (645)
Q Consensus       365 ~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~  444 (645)
                      ..+|-+.++.++|+||+++++++..|..|++-....... +.     .-.-+|...|..++.-++  +.|++++.|++|+
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~-Ie-----sfclGH~eFVS~isl~~~--~~LlS~sGD~tlr  218 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV-IE-----SFCLGHKEFVSTISLTDN--YLLLSGSGDKTLR  218 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc-hh-----hhccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence            899999999999999999999999999999877654332 22     222234578999999987  5799999999999


Q ss_pred             EEECCcc
Q 006424          445 ILDGVDV  451 (645)
Q Consensus       445 iwd~~~~  451 (645)
                      +||..+.
T Consensus       219 ~Wd~~sg  225 (390)
T KOG3914|consen  219 LWDITSG  225 (390)
T ss_pred             EEecccC
Confidence            9997743

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.46  E-value=8.9e-05  Score=69.61  Aligned_cols=188  Identities=13%  Similarity=0.170  Sum_probs=104.2

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424          203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  282 (645)
Q Consensus       203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (645)
                      =..++||||+.+||.+...|+|+++|+........  .+..                                      .
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I--~p~~--------------------------------------~   85 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI--PPAM--------------------------------------S   85 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeEEc--Cccc--------------------------------------c
Confidence            35689999999999999999999999875322111  1100                                      0


Q ss_pred             ec-cCccCeEEEEEcC-----C--CeEEEEeCCCcEEEEecCC-----CeEEEEec----CCCcEEEEEEeeCCCCEEEE
Q 006424          283 LH-GHKGDVLDLAWSN-----S--NYLLSCSMDKTVRMWQVGC-----NQCLNVFD----HHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       283 l~-~h~~~V~~l~~s~-----~--~~l~s~s~dg~I~iwd~~~-----~~~~~~~~----~~~~v~~l~~~p~~~~~l~s  345 (645)
                      +. .-...|..+.|.+     +  -.|+.-..+|.++=|-+..     .+....|.    +...|.++.++| ..++|++
T Consensus        86 ~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlV  164 (282)
T PF15492_consen   86 FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLV  164 (282)
T ss_pred             cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEE
Confidence            00 1123444444432     1  1577777888877776532     22333332    567899999999 7788877


Q ss_pred             EeCCCc-----------EEEEeCCCCcEEEeeccCCCeEEEEE-ccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424          346 GSIDGK-----------VRIWGVCEKRVVDWADVRDVISAICY-IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  413 (645)
Q Consensus       346 ~s~dg~-----------i~vwd~~~~~~~~~~~~~~~v~~l~~-sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  413 (645)
                      |+....           +..|.+-.+.          .....+ +.+...-......   .+|.+-+..       +...
T Consensus       165 gG~~~~~~~~s~a~~~GLtaWRiL~~~----------Pyyk~v~~~~~~~~~~~~~~---~~~~~~~~~-------~fs~  224 (282)
T PF15492_consen  165 GGCEQNQDGMSKASSCGLTAWRILSDS----------PYYKQVTSSEDDITASSKRR---GLLRIPSFK-------FFSR  224 (282)
T ss_pred             eccCCCCCccccccccCceEEEEcCCC----------CcEEEccccCcccccccccc---ceeecccee-------eeec
Confidence            765322           2222211111          000000 0011111111111   122221111       1111


Q ss_pred             cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce
Q 006424          414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI  452 (645)
Q Consensus       414 ~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~  452 (645)
                      .......|..|..|||| ..|++...+|.|.+|++-...
T Consensus       225 ~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  225 QGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             cccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcch
Confidence            11224789999999998 899999999999999976443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=1.8e-06  Score=84.87  Aligned_cols=203  Identities=13%  Similarity=0.175  Sum_probs=143.9

Q ss_pred             CccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCe---EEEEe-cCCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEeCCCC
Q 006424          286 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEK  360 (645)
Q Consensus       286 h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~---~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~  360 (645)
                      |...|+.+.-....++++++.||.++.|.-..-.   .+..+ .|...+.+++.+. ++.++.+.+. |..++++|+..-
T Consensus         8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeecc
Confidence            7888888877766799999999999999764312   22222 3777888888888 8889999777 999999999775


Q ss_pred             cEEEeeccCCCeEEEEEcc-CC---CEEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          361 RVVDWADVRDVISAICYIP-DG---KGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       361 ~~~~~~~~~~~v~~l~~sp-~g---~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      ..............++|.. .|   ..++++ ..+|.+.++|-.....+...     ...-|..+|.++.+.+.+ ..++
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~-----fkklH~sPV~~i~y~qa~-Ds~v  160 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY-----FKKLHFSPVKKIRYNQAG-DSAV  160 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce-----ecccccCceEEEEeeccc-ccee
Confidence            5443332222222333322 22   134443 45789999998776644321     122345899999999987 7888


Q ss_pred             EEECCCeEEEEECCcceee---------------EeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424          436 ITSEDSKLRILDGVDVIHK---------------FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  495 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~~~~~---------------~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~  495 (645)
                      +....|.|.-|......+.               +..........++.|+|+|..+.+-+.|..|+++++.+++.
T Consensus       161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence            8888999999986521111               11122456678999999999999999999999999998864

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.43  E-value=0.0004  Score=67.35  Aligned_cols=232  Identities=12%  Similarity=0.112  Sum_probs=143.7

Q ss_pred             EEEEEECC-CCCEEEEEeCCCc-EEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          203 IWTLKFSP-DGRYLASGGEDGV-VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       203 V~~l~fsp-dg~~L~sgs~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      ...++.+| .+..++.+-.-|+ ..+||..++.......                                     ...-
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-------------------------------------a~~g   49 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-------------------------------------APPG   49 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-------------------------------------CCCC
Confidence            34677888 4556777766664 6788888765433222                                     2234


Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEE-----eCCCcEEEEecC-CCeEEEEec-CCCcEEEEEEeeCCCCEEEEEe-----
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSC-----SMDKTVRMWQVG-CNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS-----  347 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~-----s~dg~I~iwd~~-~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s-----  347 (645)
                      +.|.||      -.|+++| +|++.     +..|.|-|||.. +-+.+..+. +.-....+.+.| ++..|+++.     
T Consensus        50 RHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~T  122 (305)
T PF07433_consen   50 RHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIET  122 (305)
T ss_pred             CEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCcc
Confidence            567777      4789998 66665     334889999998 556667774 444566778899 887777653     


Q ss_pred             -------------CCCcEEEEeCCCCcEEEe-----eccCCCeEEEEEccCCCEEEEEecCC-------eEEEEEecCCc
Q 006424          348 -------------IDGKVRIWGVCEKRVVDW-----ADVRDVISAICYIPDGKGFIVGSITG-------TCHFYKASGND  402 (645)
Q Consensus       348 -------------~dg~i~vwd~~~~~~~~~-----~~~~~~v~~l~~sp~g~~l~~g~~dg-------~i~iwd~~~~~  402 (645)
                                   .+..+.+.|..+++++..     ..|.-.+..+++.++|..++..-..|       .+-+++.... 
T Consensus       123 hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-  201 (305)
T PF07433_consen  123 HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-  201 (305)
T ss_pred             CcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-
Confidence                         133566677778877653     33666899999999987665544333       2333332221 


Q ss_pred             eeeeEEeeccc-cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC
Q 006424          403 LKLEKVDFHDR-KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD  481 (645)
Q Consensus       403 ~~~~~~~~~~~-~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~  481 (645)
                        ......... ...-...+-+|++++++....+++-..+.+.+||..+....-..  .-..+..++-.+++ ++++.+ 
T Consensus       202 --~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--~l~D~cGva~~~~~-f~~ssG-  275 (305)
T PF07433_consen  202 --LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--PLPDACGVAPTDDG-FLVSSG-  275 (305)
T ss_pred             --ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--ccCceeeeeecCCc-eEEeCC-
Confidence              111111110 11223678999999998545566677899999997654322222  34456777776666 666554 


Q ss_pred             CccE
Q 006424          482 DCRV  485 (645)
Q Consensus       482 dg~I  485 (645)
                      .|.+
T Consensus       276 ~G~~  279 (305)
T PF07433_consen  276 QGQL  279 (305)
T ss_pred             CccE
Confidence            4443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=1.8e-05  Score=83.65  Aligned_cols=186  Identities=16%  Similarity=0.249  Sum_probs=132.9

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424          200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  279 (645)
Q Consensus       200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (645)
                      .+.+.|++++  +++|+-|+.+|.|++.+...                                              .+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~----------------------------------------------~~   70 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG----------------------------------------------NP   70 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC----------------------------------------------cc
Confidence            4568888886  56999999999999998764                                              22


Q ss_pred             ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCC-----CCEEEEEeCCCcEE
Q 006424          280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID-----DNYFISGSIDGKVR  353 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~-----~~~l~s~s~dg~i~  353 (645)
                       .+...|+..      ..+| +++|||.||+|.|-.+.+.+....+....++.+++++| +     .+.+++|+.-| +.
T Consensus        71 -~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~P-d~~~~~sk~fv~GG~ag-lv  141 (846)
T KOG2066|consen   71 -KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHP-DFSRQQSKQFVSGGMAG-LV  141 (846)
T ss_pred             -ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEecc-chhhhhhhheeecCcce-EE
Confidence             222334433      3346 99999999999999999999988899899999999999 5     46799999888 88


Q ss_pred             EEeCC---CCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          354 IWGVC---EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       354 vwd~~---~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      ++.-+   ....+......++|.+++|.  |+++|-++.+| |++||......... +............-..+.|.++.
T Consensus       142 L~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~-i~~p~~~~R~e~fpphl~W~~~~  217 (846)
T KOG2066|consen  142 LSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN-IPPPSQSVRPELFPPHLHWQDED  217 (846)
T ss_pred             EehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeec-cCCCCCCCCcccCCCceEecCCC
Confidence            87643   23334466778899999995  77888887665 79999987765432 22222111222334568888874


Q ss_pred             CcEEEEEECCCeEEEEECC
Q 006424          431 SQRIMITSEDSKLRILDGV  449 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~~  449 (645)
                        .|+.|= ..+|+|..++
T Consensus       218 --~LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  218 --RLVIGW-GDSVKICSIK  233 (846)
T ss_pred             --eEEEec-CCeEEEEEEe
Confidence              555554 4467777765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.39  E-value=0.00017  Score=75.64  Aligned_cols=191  Identities=12%  Similarity=0.024  Sum_probs=113.2

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEE--
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAI--  375 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l--  375 (645)
                      ++.++.++.++.+..+|.++|+.+-.......+.+--.-  .+..++.+..++.++.+|..+++.+-......+...+  
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            457888889999999999999988877644443322111  2456777788999999999999877543322111000  


Q ss_pred             EEcc--CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC-CCCeEEEEEcC--CCCcEEEEEECCCeEEEEECCc
Q 006424          376 CYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNKITGIQFSR--DESQRIMITSEDSKLRILDGVD  450 (645)
Q Consensus       376 ~~sp--~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~s~--~g~~~l~~~s~dg~I~iwd~~~  450 (645)
                      .-+|  .+..+++++.+|.+..+|..+++.... .......... ......+..+|  .+ ..+++++.+|.+..+|..+
T Consensus       198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~-~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~t  275 (394)
T PRK11138        198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQ-QRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRS  275 (394)
T ss_pred             CCCCEEECCEEEEEcCCCEEEEEEccCChhhhe-eccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCC
Confidence            0112  234577788899999999887765322 1111100000 00001111112  12 3677778899999999876


Q ss_pred             ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424          451 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  496 (645)
Q Consensus       451 ~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~  496 (645)
                      .....+...  .....+.  ..+..|+.++.+|.++.+|..+++..
T Consensus       276 G~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~  317 (394)
T PRK11138        276 GQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVEL  317 (394)
T ss_pred             CCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEE
Confidence            544444321  1111222  24667888888999999999887543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=0.00014  Score=77.73  Aligned_cols=193  Identities=20%  Similarity=0.272  Sum_probs=130.2

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      .|+|  |++.+..++.|+.+|.|.+.+-.                                              .+.++
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s----------------------------------------------~~~~~   58 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSS----------------------------------------------FQLIR   58 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEeccc----------------------------------------------ceeee
Confidence            4555  56788899999999998887643                                              23345


Q ss_pred             eeccCccC-eEEEEEcCC-CeEEEEeCCCc-----EEEEecCC------CeEE---EEec-----CCCcEEEEEEeeCCC
Q 006424          282 ELHGHKGD-VLDLAWSNS-NYLLSCSMDKT-----VRMWQVGC------NQCL---NVFD-----HHNYVTCVQFNPIDD  340 (645)
Q Consensus       282 ~l~~h~~~-V~~l~~s~~-~~l~s~s~dg~-----I~iwd~~~------~~~~---~~~~-----~~~~v~~l~~~p~~~  340 (645)
                      .++.+... |..+....+ ++|++.+.|+.     +++||++.      .+++   ..+.     .+.++.+++.+. +-
T Consensus        59 ~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l  137 (933)
T KOG2114|consen   59 GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DL  137 (933)
T ss_pred             hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cc
Confidence            66666666 444443344 37888777754     89999853      2344   2222     345788999998 78


Q ss_pred             CEEEEEeCCCcEEEEeC---C--CCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc
Q 006424          341 NYFISGSIDGKVRIWGV---C--EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  415 (645)
Q Consensus       341 ~~l~s~s~dg~i~vwd~---~--~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  415 (645)
                      +.+|+|-.+|.|.++.-   +  ..+.......+++|+.+.+..+++.++-......|.+|.+.+..........     
T Consensus       138 ~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~-----  212 (933)
T KOG2114|consen  138 KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDN-----  212 (933)
T ss_pred             cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeecc-----
Confidence            89999999999999942   1  2233334566789999999999987555555678999999866522222222     


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc
Q 006424          416 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV  451 (645)
Q Consensus       416 ~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~  451 (645)
                       ++....|..+++.- ..+++++ +..+.+||....
T Consensus       213 -~G~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  213 -NGISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGR  245 (933)
T ss_pred             -CCccceeeecCCCC-ccEEEec-CceEEEEcCCCc
Confidence             35788999998874 3243333 456899986643

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.38  E-value=8.1e-06  Score=87.18  Aligned_cols=150  Identities=13%  Similarity=0.196  Sum_probs=114.0

Q ss_pred             CeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC---------CCcEEEEeCC
Q 006424          289 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI---------DGKVRIWGVC  358 (645)
Q Consensus       289 ~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~---------dg~i~vwd~~  358 (645)
                      .|+-+..+ +..+++|...|+|.+-|.++.+.++++. |.+.|..+..   .|+.|++++.         |.-|+|||+|
T Consensus       179 ~v~imR~N-nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  179 GVTIMRYN-NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             ceEEEEec-CcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhh
Confidence            45555542 3478899999999999999999999996 9999988777   6899999885         5668999999


Q ss_pred             CCcEEEeeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          359 EKRVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       359 ~~~~~~~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      ..+.+.-........-+.|+|. ...+++.+..|...+-|..+..-+.. ...+..    .+..+..+.+++++ ..++.
T Consensus       255 mmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p----~~s~i~~fDiSsn~-~alaf  329 (1118)
T KOG1275|consen  255 MMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP----NGSGISAFDISSNG-DALAF  329 (1118)
T ss_pred             hhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc----CCCcceeEEecCCC-ceEEE
Confidence            9887765554444566778884 45788899999999999433222211 111111    13559999999997 89999


Q ss_pred             EECCCeEEEEE
Q 006424          437 TSEDSKLRILD  447 (645)
Q Consensus       437 ~s~dg~I~iwd  447 (645)
                      |..+|.|.+|.
T Consensus       330 gd~~g~v~~wa  340 (1118)
T KOG1275|consen  330 GDHEGHVNLWA  340 (1118)
T ss_pred             ecccCcEeeec
Confidence            99999999997

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.34  E-value=5.8e-06  Score=88.24  Aligned_cols=162  Identities=16%  Similarity=0.266  Sum_probs=125.0

Q ss_pred             ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      +....+...-..+.|+-|+.  ++++|.+|...|+|.+-|..+                                     
T Consensus       166 ~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s-------------------------------------  206 (1118)
T KOG1275|consen  166 TEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS-------------------------------------  206 (1118)
T ss_pred             cceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc-------------------------------------
Confidence            33333333333444666665  678999999999999999887                                     


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeC---------CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCC
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSM---------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID  339 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~---------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~  339 (645)
                              .+.++++..|++.|.++... ++.|++||.         |.-|+|||++..+.+.-++......-+.|+|.-
T Consensus       207 --------~~~iht~~aHs~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl  277 (1118)
T KOG1275|consen  207 --------FETIHTFDAHSGSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSL  277 (1118)
T ss_pred             --------Cceeeeeeccccceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccc
Confidence                    56789999999999988764 358888876         456899999988887777655555778899966


Q ss_pred             CCEEEEEeCCCcEEEEe---CCCC--cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEe
Q 006424          340 DNYFISGSIDGKVRIWG---VCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  398 (645)
Q Consensus       340 ~~~l~s~s~dg~i~vwd---~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~  398 (645)
                      ...+++++..|...+-|   +...  ...........+.+++++++|+.++.|..+|.|.+|.-
T Consensus       278 ~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  278 TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            77899999999999999   3333  23334455666999999999999999999999999973

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.33  E-value=1.8e-06  Score=82.15  Aligned_cols=153  Identities=16%  Similarity=0.269  Sum_probs=116.4

Q ss_pred             EEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-----cEEEe
Q 006424          293 LAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-----RVVDW  365 (645)
Q Consensus       293 l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~-----~~~~~  365 (645)
                      ++|+-+  ++-++.+.+..|-+-|+++|.. +.|...+.|.++.|.- .+++++.|..+|.|..+|++.+     .+...
T Consensus       217 CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhhccceeeecccccceeEEEEeecccc-cccccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            366633  4457788888999999987754 4455778899999998 8899999999999999999874     45567


Q ss_pred             eccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEE
Q 006424          366 ADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  444 (645)
Q Consensus       366 ~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~  444 (645)
                      .-|.+.|+++..-. ++++|++.+.+|+|.+||++..+.......+.+|...+.  -.-+...+.+ ..+++++.|...+
T Consensus       295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a--~l~~~v~~ee-g~I~s~GdDcytR  371 (425)
T KOG2695|consen  295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA--YLPAHVKEEE-GSIFSVGDDCYTR  371 (425)
T ss_pred             EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc--cccccccccc-ceEEEccCeeEEE
Confidence            78999999998777 788999999999999999997766444444555432221  1122344554 5888899999999


Q ss_pred             EEECCc
Q 006424          445 ILDGVD  450 (645)
Q Consensus       445 iwd~~~  450 (645)
                      ||.+..
T Consensus       372 iWsl~~  377 (425)
T KOG2695|consen  372 IWSLDS  377 (425)
T ss_pred             EEeccc
Confidence            999874

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.31  E-value=0.00013  Score=80.77  Aligned_cols=197  Identities=13%  Similarity=0.188  Sum_probs=128.9

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      +.|.++.|..++.-++.+..+|.|.+-|..+..                                              +
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~----------------------------------------------~  102 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLE----------------------------------------------L  102 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccc----------------------------------------------e
Confidence            679999999999999999999999998876532                                              2


Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEec----CCCeEE-------------------EEec-----------
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV----GCNQCL-------------------NVFD-----------  325 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~----~~~~~~-------------------~~~~-----------  325 (645)
                      .....-...|.+++|+||. .++..+.++++.+-+-    -..+.+                   ..|.           
T Consensus       103 eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~  182 (1265)
T KOG1920|consen  103 EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQK  182 (1265)
T ss_pred             eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccc
Confidence            2223346789999999997 6777777777766432    111111                   0110           


Q ss_pred             -----------CCCcEEEEEEeeCCCCEEEEEe----CC-CcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEe
Q 006424          326 -----------HHNYVTCVQFNPIDDNYFISGS----ID-GKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGS  388 (645)
Q Consensus       326 -----------~~~~v~~l~~~p~~~~~l~s~s----~d-g~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~  388 (645)
                                 ..+.=+.+.|-- ||.++++..    .+ +.|++||.+ +.+-. -....+.-.+++|-|.|..+++-.
T Consensus       183 ~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq  260 (1265)
T KOG1920|consen  183 IEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQ  260 (1265)
T ss_pred             ccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeee
Confidence                       011123478887 898988833    23 789999987 44332 222334456899999999888753


Q ss_pred             ---cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE---EECCCeEEEEECCc
Q 006424          389 ---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI---TSEDSKLRILDGVD  450 (645)
Q Consensus       389 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~---~s~dg~I~iwd~~~  450 (645)
                         .|+.|.+|.-++-....-.+..+.    ....+..++|+.++ ..|++   ......|++|-..+
T Consensus       261 ~~~sd~~IvffErNGL~hg~f~l~~p~----de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  261 CKTSDSDIVFFERNGLRHGEFVLPFPL----DEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             ecCCCCcEEEEecCCccccccccCCcc----cccchheeeecCCC-CceeeeecccccceEEEEEecC
Confidence               456788988765543221121211    22448999999996 67777   44455699998764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.29  E-value=1.6e-06  Score=57.08  Aligned_cols=36  Identities=33%  Similarity=0.722  Sum_probs=33.6

Q ss_pred             CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQ  314 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd  314 (645)
                      ++..+.+|.+.|++++|+|++ +|++++.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999986 999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=8.5e-05  Score=72.50  Aligned_cols=84  Identities=15%  Similarity=0.205  Sum_probs=73.2

Q ss_pred             CCceeeccCccCeEEEEEcCC--CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~--~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      +..+-+.+|...|.+++|+|.  |.+..++.+.+|+|.|+++..++..+.....+++++|.-++.++++.|..+|.|.+|
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlvy  263 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVY  263 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEE
Confidence            334566788899999999986  478899999999999999999999998779999999998677889999999999999


Q ss_pred             eCCCCc
Q 006424          356 GVCEKR  361 (645)
Q Consensus       356 d~~~~~  361 (645)
                      |++..+
T Consensus       264 D~R~~~  269 (463)
T KOG1645|consen  264 DMRQPE  269 (463)
T ss_pred             EccCCC
Confidence            998643

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=8.8e-06  Score=85.95  Aligned_cols=148  Identities=18%  Similarity=0.183  Sum_probs=109.3

Q ss_pred             CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceee
Q 006424          326 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL  405 (645)
Q Consensus       326 ~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~  405 (645)
                      ....++|++++   +.+|+.|+.+|.|++++..... .....|...      ..+|.++++++.||++.+..+-+.+.. 
T Consensus        38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~-  106 (846)
T KOG2066|consen   38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI-  106 (846)
T ss_pred             hhhHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc-
Confidence            34567788884   6899999999999999987654 333334332      568999999999999999888766542 


Q ss_pred             eEEeeccccccCCCCeEEEEEcCC----CCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424          406 EKVDFHDRKKTSGNKITGIQFSRD----ESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI  479 (645)
Q Consensus       406 ~~~~~~~~~~~~~~~i~~i~~s~~----g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~  479 (645)
                      ....++       .++.+++++|+    .+..+++|+.-| +.++.-+  ........+...++|.++.|  .|+++|=+
T Consensus       107 ~~~df~-------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWa  176 (846)
T KOG2066|consen  107 TQYDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWA  176 (846)
T ss_pred             eeEecC-------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEe
Confidence            233333       57899999998    346799999988 8887633  22223345567899999999  57888887


Q ss_pred             eCCccEEEEeCCCCCc
Q 006424          480 GDDCRVYVWNYDELCF  495 (645)
Q Consensus       480 s~dg~I~iwd~~~~~~  495 (645)
                      +++| |+|||+...+.
T Consensus       177 nd~G-v~vyd~~~~~~  191 (846)
T KOG2066|consen  177 NDDG-VKVYDTPTRQR  191 (846)
T ss_pred             cCCC-cEEEeccccce
Confidence            7665 89999988763

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.23  E-value=0.0022  Score=62.29  Aligned_cols=202  Identities=13%  Similarity=0.143  Sum_probs=129.4

Q ss_pred             EEEEEcCCC--eEEEEeCCCc-EEEEecCCCeEEEEecCCC---cEEEEEEeeCCCCEEEEEeC-----CCcEEEEeCCC
Q 006424          291 LDLAWSNSN--YLLSCSMDKT-VRMWQVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSI-----DGKVRIWGVCE  359 (645)
Q Consensus       291 ~~l~~s~~~--~l~s~s~dg~-I~iwd~~~~~~~~~~~~~~---~v~~l~~~p~~~~~l~s~s~-----dg~i~vwd~~~  359 (645)
                      ..++.+|..  .++.+-.-|+ ..+||..+++....+....   .--.-.|++ ++++|++.-.     .|.|-|||...
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence            355667743  5556666554 6789999998887764211   122457999 9999988654     47899999983


Q ss_pred             --CcEEEeeccCCCeEEEEEccCCCEEEEEec------------------CCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424          360 --KRVVDWADVRDVISAICYIPDGKGFIVGSI------------------TGTCHFYKASGNDLKLEKVDFHDRKKTSGN  419 (645)
Q Consensus       360 --~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  419 (645)
                        .++-++..+.-....+.+.|||+.|+++..                  +.++.+.|..++...- +..+.  ...|..
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~-q~~Lp--~~~~~l  163 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE-QVELP--PDLHQL  163 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee-eeecC--cccccc
Confidence              234457777777888999999988887631                  2244555555555422 22221  012346


Q ss_pred             CeEEEEEcCCCCcEEEEEECCC-------eEEEEECCcceeeEee-----cCCCCCeEEEEEecCCCEEEEEe-CCccEE
Q 006424          420 KITGIQFSRDESQRIMITSEDS-------KLRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIG-DDCRVY  486 (645)
Q Consensus       420 ~i~~i~~s~~g~~~l~~~s~dg-------~I~iwd~~~~~~~~~~-----~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~  486 (645)
                      .|..+++.++| ..++..-..|       .|.+++.......+..     ..-.+.+-+|++++++.++++++ ..+++.
T Consensus       164 SiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~  242 (305)
T PF07433_consen  164 SIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA  242 (305)
T ss_pred             ceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence            78999999997 3333332222       3455554443333332     12356899999999998886665 578999


Q ss_pred             EEeCCCCCcCC
Q 006424          487 VWNYDELCFPS  497 (645)
Q Consensus       487 iwd~~~~~~~~  497 (645)
                      +||..++....
T Consensus       243 ~~d~~tg~~~~  253 (305)
T PF07433_consen  243 VWDAATGRLLG  253 (305)
T ss_pred             EEECCCCCEee
Confidence            99999885433

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.17  E-value=0.00031  Score=72.67  Aligned_cols=115  Identities=16%  Similarity=0.182  Sum_probs=84.9

Q ss_pred             cCCCcEEEEEEeeCCCCEEEEEe----CCCc----EEEEeCCCCcEE----EeeccCCCeEEEEEccCCCEEEEEecCCe
Q 006424          325 DHHNYVTCVQFNPIDDNYFISGS----IDGK----VRIWGVCEKRVV----DWADVRDVISAICYIPDGKGFIVGSITGT  392 (645)
Q Consensus       325 ~~~~~v~~l~~~p~~~~~l~s~s----~dg~----i~vwd~~~~~~~----~~~~~~~~v~~l~~sp~g~~l~~g~~dg~  392 (645)
                      .......++.|+-.+++.+.+..    .+|.    -.+|+...+++.    .....+..+.+++++|+...++.|+.||.
T Consensus       203 rTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS  282 (545)
T PF11768_consen  203 RTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS  282 (545)
T ss_pred             EecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe
Confidence            34445577788875666665543    2343    456776655433    24567889999999999999999999999


Q ss_pred             EEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424          393 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV  449 (645)
Q Consensus       393 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~  449 (645)
                      |.+||...........         .-..+.++|+|+| ..+++|+..|.+.+||..
T Consensus       283 iiLyD~~~~~t~~~ka---------~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  283 IILYDTTRGVTLLAKA---------EFIPTLIAWHPDG-AIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             EEEEEcCCCeeeeeee---------cccceEEEEcCCC-cEEEEEcCCceEEEEEee
Confidence            9999987664332211         1457889999998 899999999999999965

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.16  E-value=1.8e-06  Score=91.41  Aligned_cols=200  Identities=14%  Similarity=0.110  Sum_probs=135.1

Q ss_pred             CCCceeeccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC--cE
Q 006424          277 ESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG--KV  352 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg--~i  352 (645)
                      .+..+.++.|....+|++|+-+ +.|+.|+..|.|+++++.+|....... |.+.|+.+.-+. ++..+++.+.-.  -.
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchH
Confidence            3456778889999999999976 499999999999999999998887775 999999998887 787766655433  46


Q ss_pred             EEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424          353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                      .+|++.+  .......-..-.++.|+.....-++|+......+||+.+.......+.-..   .....-++..|+|+. .
T Consensus      1170 aLW~~~s--~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~---~~~y~~n~a~FsP~D-~ 1243 (1516)
T KOG1832|consen 1170 ALWDASS--TGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV---TSSYSNNLAHFSPCD-T 1243 (1516)
T ss_pred             HHhcccc--ccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch---hhhhhccccccCCCc-c
Confidence            7999865  111111122345778887766677788888899999998765433111110   011223678899986 4


Q ss_pred             EEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          433 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       433 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      +++   .||  .+||.+.............. ..-.|+|.|.-++.-++     |||+++-.
T Consensus      1244 LIl---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1244 LIL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred             eEe---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHH
Confidence            444   233  47997743222211111111 23368999999998775     89998764

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.12  E-value=0.0028  Score=67.39  Aligned_cols=177  Identities=12%  Similarity=0.055  Sum_probs=112.3

Q ss_pred             EEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC----cEEEEeCCCCcEEEeeccCCCeEEEEEc
Q 006424          303 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG----KVRIWGVCEKRVVDWADVRDVISAICYI  378 (645)
Q Consensus       303 s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~v~~l~~s  378 (645)
                      +.-..+.+.+.|.++.+....+........++++| ++.++++.+.+.    ++..-+.............. +  -.+.
T Consensus       210 ~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-i--ea~v  285 (635)
T PRK02888        210 PKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-I--EEAV  285 (635)
T ss_pred             ccceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchHH-H--HHhh
Confidence            34445678888888888877776666667889999 888888776322    23333332211111111100 0  0234


Q ss_pred             cCCCEEEEEecCCeEEEEEecC----CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceee
Q 006424          379 PDGKGFIVGSITGTCHFYKASG----NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK  454 (645)
Q Consensus       379 p~g~~l~~g~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~  454 (645)
                      ++|++..+  .++.|.+.|..+    .......+...       .....+.++|||...++++..+.+|.|.|+.+....
T Consensus       286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-------KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~  356 (635)
T PRK02888        286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-------KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL  356 (635)
T ss_pred             hCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-------CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence            57887776  367899999887    22223333322       456789999999656666667999999998754321


Q ss_pred             E----------ee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          455 F----------KG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       455 ~----------~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      +          .. ..-.......+|+++|+...|---|..|..||+..
T Consensus       357 ~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        357 FDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            1          11 11122345678999998888888899999999976

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.09  E-value=0.0011  Score=68.46  Aligned_cols=265  Identities=17%  Similarity=0.181  Sum_probs=136.1

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee-eEecCC-----CCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-KSFTDD-----GGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      .|+++.|+++..-|+.|...|.|.||.....+... ....+.     ..+......+.+.-......       ..+ ..
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~-------~~~-~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAP-------PSL-KE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG---------TT--SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCC-------ccc-cc
Confidence            48999999999999999999999999887633221 000000     00001111111111111000       000 00


Q ss_pred             cCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec---------CCCcEEEEEEee----CCC--
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---------HHNYVTCVQFNP----IDD--  340 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~---------~~~~v~~l~~~p----~~~--  340 (645)
                      .-.+...+....++|++++.|+=|+++.|..+|.+.|.|++....+..-.         ....++++.|..    .|+  
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             ccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence            12344555666899999999877999999999999999998887776532         234688888863    122  


Q ss_pred             -CEEEEEeCCCcEEEEeCC--C-Cc-EE---Ee-eccCCCeEEEE-EccCC--------------------CEEEEEecC
Q 006424          341 -NYFISGSIDGKVRIWGVC--E-KR-VV---DW-ADVRDVISAIC-YIPDG--------------------KGFIVGSIT  390 (645)
Q Consensus       341 -~~l~s~s~dg~i~vwd~~--~-~~-~~---~~-~~~~~~v~~l~-~sp~g--------------------~~l~~g~~d  390 (645)
                       -.+++|...|.+.+|.+.  . +. ..   .. ..+.+.+..+. ++.+.                    ..+++...+
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe  234 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE  234 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence             368899999999999874  2 21 11   12 24556666555 32211                    235555667


Q ss_pred             CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc----CCCCcEEEEEECCCeEEEEECCcceeeEeecC----CCC
Q 006424          391 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS----RDESQRIMITSEDSKLRILDGVDVIHKFKGLP----KSG  462 (645)
Q Consensus       391 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s----~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~----~~~  462 (645)
                      ..++++...+.+...+.+  ..     ......+.+-    ..+...|++-..+|.|++|.+-.........-    ...
T Consensus       235 ~~irv~~~~~~k~~~K~~--~~-----~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~  307 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSF--DD-----PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR  307 (395)
T ss_dssp             SEEEEE-TT---EEEEE---SS------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred             cceEEEeCCCCcccceee--cc-----ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence            889999887766544333  11     0122333442    12236888899999999999875444333321    112


Q ss_pred             CeEEEEEecCCCEEEEEeC
Q 006424          463 SQMSASFTTTGKHIISIGD  481 (645)
Q Consensus       463 ~i~~v~~sp~~~~l~t~s~  481 (645)
                      .+...+++++|..++-.+.
T Consensus       308 ~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  308 RLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             HHTT-EE-TTS-EEEE-SS
T ss_pred             cccccEECCCCCEEEEeCc
Confidence            3345667888887666543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.08  E-value=0.0023  Score=61.86  Aligned_cols=184  Identities=16%  Similarity=0.061  Sum_probs=111.1

Q ss_pred             CCcEEEEecCCCeEEEEecCCCcEEEEE--EeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEE
Q 006424          307 DKTVRMWQVGCNQCLNVFDHHNYVTCVQ--FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF  384 (645)
Q Consensus       307 dg~I~iwd~~~~~~~~~~~~~~~v~~l~--~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l  384 (645)
                      +|+|..||..+|+.+.............  ..+ +++.+++++.++.|+.||..+++.+-.......+...- ...+..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence            6899999999999988886422122222  222 56778888899999999999998776444443332222 2355677


Q ss_pred             EEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCC-
Q 006424          385 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS-  463 (645)
Q Consensus       385 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~-  463 (645)
                      ++++.++.+..+|..+++........... ...........+.  + ..++++..++.|..+|..+............. 
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSP-PAGVRSSSSPAVD--G-DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSC-TCSTB--SEEEEE--T-TEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             ccccceeeeEecccCCcceeeeecccccc-ccccccccCceEe--c-CEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            77888899999998888765442221110 0000111222222  4 57888888999999998865554443222211 


Q ss_pred             ---------eEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424          464 ---------QMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  497 (645)
Q Consensus       464 ---------i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~  497 (645)
                               +..-....++ .++.++.+|.+.-+|+.+++..+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w  197 (238)
T PF13360_consen  156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW  197 (238)
T ss_dssp             S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE
T ss_pred             CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE
Confidence                     1122222244 77777778864444999886333

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.08  E-value=0.00076  Score=70.45  Aligned_cols=225  Identities=16%  Similarity=0.170  Sum_probs=121.2

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      ...-....+.++|+|++++. +.||...|+.....                                             
T Consensus        30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---------------------------------------------   63 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---------------------------------------------   63 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---------------------------------------------
T ss_pred             CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---------------------------------------------
Confidence            34445789999999999888 55677777763321                                             


Q ss_pred             CCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424          278 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  357 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~  357 (645)
                         +.  ...+.-...+|.+.+.+++-...++|.++.--+......+..+..+..+-.    |.+|+..+. +.|.+||+
T Consensus        64 ---r~--k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw  133 (443)
T PF04053_consen   64 ---RN--KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDW  133 (443)
T ss_dssp             ---EE--EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEET-TEEEEE-T
T ss_pred             ---cc--cccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECC-CCEEEEEh
Confidence               11  113445667898888888888889999963222333234443333444422    677777664 48999999


Q ss_pred             CCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC--------ce--eeeEEeeccccccCCCCeEEEEEc
Q 006424          358 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN--------DL--KLEKVDFHDRKKTSGNKITGIQFS  427 (645)
Q Consensus       358 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~--------~~--~~~~~~~~~~~~~~~~~i~~i~~s  427 (645)
                      .+++.+....... |..+.|+++|.+++..+.+ .+.+++....        ..  ....  .+.    ....|.+..|.
T Consensus       134 ~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~--~~E----~~~~IkSg~W~  205 (443)
T PF04053_consen  134 ETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFEL--IHE----ISERIKSGCWV  205 (443)
T ss_dssp             TT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEE--EEE----E-S--SEEEEE
T ss_pred             hHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEE--EEE----ecceeEEEEEE
Confidence            9999988777654 8999999999999998855 6677665433        00  0111  111    02578888898


Q ss_pred             CCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          428 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       428 ~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .+  -++.+...  .++.+-..+ ...+..  -..++.=+.+.|..+.+.....|+.|..+.++..
T Consensus       206 ~d--~fiYtT~~--~lkYl~~Ge-~~~i~~--ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  206 ED--CFIYTTSN--HLKYLVNGE-TGIIAH--LDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             TT--EEEEE-TT--EEEEEETTE-EEEEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             cC--EEEEEcCC--eEEEEEcCC-cceEEE--cCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence            76  34444443  676644322 222222  2335566667777788888888889988887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.06  E-value=0.00079  Score=70.10  Aligned_cols=196  Identities=16%  Similarity=0.216  Sum_probs=118.2

Q ss_pred             CCCceeeccCccCeEEEEEcCCC-eEEEE--eCC--CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE-eCCC
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSN-YLLSC--SMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDG  350 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~--s~d--g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~-s~dg  350 (645)
                      +...+.+..-...+..-+|+|++ .++..  ...  ..+.++|+++++..........-...+|+| +++.++.+ ..||
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg  260 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDG  260 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCC
Confidence            33344444445567777888886 32222  222  359999999888777666566666778999 77765544 4555


Q ss_pred             c--EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          351 K--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       351 ~--i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      .  |+++|+.++....+....+.-..-.|+|||+.++-.+. .|  .|.+++..+...  ..+.....      .-..-.
T Consensus       261 ~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~------~~~~p~  332 (425)
T COG0823         261 SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGG------GNSNPV  332 (425)
T ss_pred             CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccCC------CCcCcc
Confidence            4  77778888876665555555557789999998877654 44  455566665544  33333321      122678


Q ss_pred             EcCCCCcEEEEEECCCe--EEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 006424          426 FSRDESQRIMITSEDSK--LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD  482 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg~--I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d  482 (645)
                      |+|+|..+++....+|.  |.+.|...... ............-+|.+++..+...+..
T Consensus       333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         333 WSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence            99999544444534455  45555432221 2222233344456778888877765543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.06  E-value=0.00024  Score=78.80  Aligned_cols=244  Identities=12%  Similarity=0.106  Sum_probs=139.4

Q ss_pred             CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424          327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  406 (645)
Q Consensus       327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~  406 (645)
                      ...|.++.|.- +.+.++.+..+|.|.+-|..+............|.+++|+||+..++..+.++++.+.+-. ......
T Consensus        68 d~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~E  145 (1265)
T KOG1920|consen   68 DDEIVSVQFLA-DTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FEPIAE  145 (1265)
T ss_pred             CcceEEEEEec-ccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchhc
Confidence            35799999998 8888899999999999999888887777888899999999999999999988888765432 111110


Q ss_pred             EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe-----C
Q 006424          407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-----D  481 (645)
Q Consensus       407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-----~  481 (645)
                       ..+... ....+....+-|-...  .=+-| ..|...-.+............-...-++++|--||+++|+..     .
T Consensus       146 -~~L~~d-~~~~sk~v~VGwGrke--Tqfrg-s~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~  220 (1265)
T KOG1920|consen  146 -KPLDAD-DERKSKFVNVGWGRKE--TQFRG-SEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG  220 (1265)
T ss_pred             -cccccc-cccccccceecccccc--eeeec-chhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence             001000 0001222233333221  01111 111111111110001011011222335789999999999843     3


Q ss_pred             CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCC-----ccCCCC
Q 006424          482 DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP-----WIRDSE  556 (645)
Q Consensus       482 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~-----~~~~~~  556 (645)
                      ...|+|||-+ +.......          ...+.-.+++|-|.|..+++....+....+.+.....-.+     ..+...
T Consensus       221 ~RkirV~drE-g~Lns~se----------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de  289 (1265)
T KOG1920|consen  221 TRKIRVYDRE-GALNSTSE----------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE  289 (1265)
T ss_pred             ceeEEEeccc-chhhcccC----------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence            3899999987 32211110          1133345677777777777665544444333333322111     122223


Q ss_pred             ccccCccccCCCCCCcC---CCCCCCcCCCCCCccC
Q 006424          557 RFSLGSWFSNDGPCRGS---ATWPAEKLPLWDVTID  589 (645)
Q Consensus       557 ~~~~~~~fs~dg~~l~s---~s~~d~~i~iWd~~~~  589 (645)
                      ..+..++|+.++..|+.   ... ...|.+|-+.+.
T Consensus       290 ~~ve~L~Wns~sdiLAv~~~~~e-~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  290 KEVEELAWNSNSDILAVVTSNLE-NSLVQLWTTGNY  324 (1265)
T ss_pred             cchheeeecCCCCceeeeecccc-cceEEEEEecCe
Confidence            34788999999998876   333 445899976544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.05  E-value=0.00035  Score=74.33  Aligned_cols=235  Identities=14%  Similarity=0.175  Sum_probs=132.0

Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CcEE--
Q 006424          289 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVV--  363 (645)
Q Consensus       289 ~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~--  363 (645)
                      .+++++|+|.. .|+.|-.-|.+.+|...+.+.-... .|+.+|..+.|+| +|+.++++..-|.|.+|.... +++.  
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~~g~~q~~  139 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDVIGEIQTS  139 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeeeccccccc
Confidence            35669999987 6778888899999998766554443 4999999999999 999999999999999997652 1110  


Q ss_pred             ----------------Eee---------------ccCCCeE------------EE--EEccCCCEEEEEecCCeEEEEEe
Q 006424          364 ----------------DWA---------------DVRDVIS------------AI--CYIPDGKGFIVGSITGTCHFYKA  398 (645)
Q Consensus       364 ----------------~~~---------------~~~~~v~------------~l--~~sp~g~~l~~g~~dg~i~iwd~  398 (645)
                                      ++.               +....+-            ++  .=.|+|..++.++.+|+|+..|-
T Consensus       140 ~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq  219 (1416)
T KOG3617|consen  140 NIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQ  219 (1416)
T ss_pred             hhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcC
Confidence                            000               0000000            00  11356778888889999888876


Q ss_pred             cCCceeeeEEeec--cccccCCCCeEEEE-EcCCCCcEEE------------------EEECCCeEEEEECC---cceee
Q 006424          399 SGNDLKLEKVDFH--DRKKTSGNKITGIQ-FSRDESQRIM------------------ITSEDSKLRILDGV---DVIHK  454 (645)
Q Consensus       399 ~~~~~~~~~~~~~--~~~~~~~~~i~~i~-~s~~g~~~l~------------------~~s~dg~I~iwd~~---~~~~~  454 (645)
                      .+....+......  -........|.++. +..+  .++.                  .|+..|.|.+=...   .....
T Consensus       220 ~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~--~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eK  297 (1416)
T KOG3617|consen  220 NGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRD--CLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEK  297 (1416)
T ss_pred             CCcEEEEEEccchHHHHHhcccceEEEEeeecee--eEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcc
Confidence            5544333211100  00000112222221 1111  0000                  11111222111111   00111


Q ss_pred             EeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC-CCCcCCCcccCCcceeee-eecCCcEEEEecCCCCcccc
Q 006424          455 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD-ELCFPSSKQKNSVRSCEH-FFSEGVSVAVQWPGIGTEQK  529 (645)
Q Consensus       455 ~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~-~~~~g~~~~v~~s~~~~~l~  529 (645)
                       .+......+++++++..+..|..|...|.+.+|.-. .+-....  ......... -...|.+..+.|.|-...++
T Consensus       298 -yg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p--~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~a  371 (1416)
T KOG3617|consen  298 -YGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDP--TIDVWTLNGKRESLGKISLIRWGPIKSTAA  371 (1416)
T ss_pred             -hhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCC--CcceEEecCchhhccceEEEEeccccchhh
Confidence             122345679999999999999999999999999533 3211111  111111111 12357788899988666555

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.05  E-value=0.00047  Score=71.31  Aligned_cols=74  Identities=8%  Similarity=0.098  Sum_probs=63.2

Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      ...+.+++++|+. ..++.|+.||.|.+||.......+..  ..-..+.++|+|+|..+++|++.|.+.+||+.-..
T Consensus       259 ~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~~~k--a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  259 PSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTLLAK--AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             CCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeeeeee--ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            3789999999997 89999999999999998765555443  44567899999999999999999999999987543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.04  E-value=0.0024  Score=66.87  Aligned_cols=178  Identities=10%  Similarity=0.055  Sum_probs=107.3

Q ss_pred             CeEEEEeCCCcEEEEecCCCeEEEEecCCCc--------EEEEEEee-CCCCEEEEEeCCCcEEEEeCCCCcEEEeeccC
Q 006424          299 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNP-IDDNYFISGSIDGKVRIWGVCEKRVVDWADVR  369 (645)
Q Consensus       299 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--------v~~l~~~p-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  369 (645)
                      +.++.++.+|.+...|..+|+.+..+....+        ...+.-+| ..++.++.++.+|.+..+|..+++..-.....
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~  285 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG  285 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence            5677788899999999998887655431110        00111111 02456777778999999999998866433322


Q ss_pred             CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424          370 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV  449 (645)
Q Consensus       370 ~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~  449 (645)
                      . ...+.  ..+..+++++.+|.+..+|..++...........      ....+.... +  ..++.++.+|.+...|..
T Consensus       286 ~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~------~~~~sp~v~-~--g~l~v~~~~G~l~~ld~~  353 (394)
T PRK11138        286 S-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH------RLLTAPVLY-N--GYLVVGDSEGYLHWINRE  353 (394)
T ss_pred             C-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC------CcccCCEEE-C--CEEEEEeCCCEEEEEECC
Confidence            2 11122  2566788888999999999987764322111111      111222222 3  478889999999999977


Q ss_pred             cceeeEeecCCCCCeEE-EEEecCCCEEEEEeCCccEEEEeC
Q 006424          450 DVIHKFKGLPKSGSQMS-ASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       450 ~~~~~~~~~~~~~~i~~-v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      +.....+.......+.+ ..+  .+..|+.++.||.++.++.
T Consensus       354 tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        354 DGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            65444333222222222 122  3557888899999998764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=9.2e-05  Score=72.29  Aligned_cols=131  Identities=9%  Similarity=-0.015  Sum_probs=87.4

Q ss_pred             EEEEeCCCCcEE-EeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          352 VRIWGVCEKRVV-DWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       352 i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      +++.+..+-+.. ....+...|..++|+|..+ ++..++.+..|++.|+++.......   ..     ...+.+++|.-+
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy---~a-----~~~~wSC~wDld  246 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY---IA-----YNQIWSCCWDLD  246 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe---ec-----cCCceeeeeccC
Confidence            455544332222 3456677899999999777 6888999999999999987654321   11     267899999999


Q ss_pred             CCcEEEEEECCCeEEEEECCcce---eeEeecCCCCCeEEEEE------ecCCCEEEEEeCCccEEEEeCCC
Q 006424          430 ESQRIMITSEDSKLRILDGVDVI---HKFKGLPKSGSQMSASF------TTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~---~~~~~~~~~~~i~~v~~------sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      ...++++|...|.|.|||++...   ..+.......+|..++.      .+.|.+|+..+.+  ...|++..
T Consensus       247 e~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~  316 (463)
T KOG1645|consen  247 ERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVF  316 (463)
T ss_pred             CcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhc
Confidence            88899999999999999988432   23333223445554432      3345556555543  55666653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.01  E-value=2.7e-06  Score=87.44  Aligned_cols=198  Identities=15%  Similarity=0.207  Sum_probs=131.2

Q ss_pred             ccCeEEEEEcCC--C-eEEEEeCCCcEEEEecCCCeEE---EEecCCCcEEEEEEeeCCCCEEEEEe----CCCcEEEEe
Q 006424          287 KGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCL---NVFDHHNYVTCVQFNPIDDNYFISGS----IDGKVRIWG  356 (645)
Q Consensus       287 ~~~V~~l~~s~~--~-~l~s~s~dg~I~iwd~~~~~~~---~~~~~~~~v~~l~~~p~~~~~l~s~s----~dg~i~vwd  356 (645)
                      ...+.|+++..+  . .++.|..+|.|-+-.++...-.   .+-++...+++++|++.|.+.||.|-    .|..+.+||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            445777777643  2 6888999999999887644322   22357788999999998788888874    356799999


Q ss_pred             CCCCcEE-----Eee-ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          357 VCEKRVV-----DWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       357 ~~~~~~~-----~~~-~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      +.++-..     .+. +......++||..+.+.+.+|.....++++|++........+.        ...+..+...|-.
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--------Tk~vqG~tVdp~~  207 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--------TKYVQGITVDPFS  207 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--------hhhcccceecCCC
Confidence            9876211     122 2445567899998999999999999999999984433222111        1345667777733


Q ss_pred             CcEEEEEECCCeEEEEEC-CcceeeEeecCC-----CCCeEEEEEecCCC-EEEEEe-CCccEEEEeCCCC
Q 006424          431 SQRIMITSEDSKLRILDG-VDVIHKFKGLPK-----SGSQMSASFTTTGK-HIISIG-DDCRVYVWNYDEL  493 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~-~~~~~~~~~~~~-----~~~i~~v~~sp~~~-~l~t~s-~dg~I~iwd~~~~  493 (645)
                      ..++++.. ||.|.+||. ++....+....+     ...+..++|+|... .+++.+ +.++|+++|+..-
T Consensus       208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence            35665555 999999993 322222211111     22488999999643 445554 4589999998643

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.00  E-value=0.0059  Score=62.84  Aligned_cols=231  Identities=13%  Similarity=0.129  Sum_probs=120.6

Q ss_pred             ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-C-----------------CCcEEEEEEeeCCCCEEEEEeC
Q 006424          287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-H-----------------HNYVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~-----------------~~~v~~l~~~p~~~~~l~s~s~  348 (645)
                      ...+....|+|+|..++--.++.|.+++..++...+... .                 -+.-..+-|+| ++++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEE
Confidence            567888999999844444456889999988775543321 1                 11235678999 8888776543


Q ss_pred             C-Cc-----------------------------------EEEEeCCCCcEEEe------eccCCCeEEEEEccCCCEEEE
Q 006424          349 D-GK-----------------------------------VRIWGVCEKRVVDW------ADVRDVISAICYIPDGKGFIV  386 (645)
Q Consensus       349 d-g~-----------------------------------i~vwd~~~~~~~~~------~~~~~~v~~l~~sp~g~~l~~  386 (645)
                      | ..                                   +.|+|+.+++...+      ......+..+.|.++++.+++
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            2 22                                   23334444332111      123345778899999884444


Q ss_pred             Ee--cCC---eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc-CCCCcEEEEEECCCeEEE--EECCcceeeEeec
Q 006424          387 GS--ITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS-RDESQRIMITSEDSKLRI--LDGVDVIHKFKGL  458 (645)
Q Consensus       387 g~--~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s-~~g~~~l~~~s~dg~I~i--wd~~~~~~~~~~~  458 (645)
                      .-  .+.   .+.++|..++............   --..-....|. +++..++.....||.-+|  ++....... ...
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~---Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT  276 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDG---WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLT  276 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSS---SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCc---ceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccc
Confidence            32  222   4667777665544332111111   11222345554 676678888888875444  454433322 222


Q ss_pred             CCCCCeEE-EEEecCCCEEE-EEeCC----ccEEEEeCC-CCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcccccc
Q 006424          459 PKSGSQMS-ASFTTTGKHII-SIGDD----CRVYVWNYD-ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL  531 (645)
Q Consensus       459 ~~~~~i~~-v~~sp~~~~l~-t~s~d----g~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~  531 (645)
                      ...-.|.. +.++++++.|+ ++..+    ..++.-+++ .+.........           +....+.++|++.+++..
T Consensus       277 ~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~-----------~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  277 SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED-----------GDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             -SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS-----------STTEEEEE-TTSSEEEEE
T ss_pred             cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC-----------CCceEEEECCCCCEEEEE
Confidence            23445644 67888877665 44432    245555665 33221111111           111466677777776644


Q ss_pred             CC
Q 006424          532 CS  533 (645)
Q Consensus       532 ~~  533 (645)
                      ++
T Consensus       346 ~s  347 (353)
T PF00930_consen  346 YS  347 (353)
T ss_dssp             EE
T ss_pred             Ec
Confidence            43

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.99  E-value=4.8e-06  Score=85.59  Aligned_cols=202  Identities=15%  Similarity=0.211  Sum_probs=133.7

Q ss_pred             CcEEEEEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          201 GCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       201 ~~V~~l~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      ..+.|++++-+  ...++.|..+|.|-+-.+....                                           ..
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h-------------------------------------------dS   93 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH-------------------------------------------DS   93 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcc-------------------------------------------cc
Confidence            35777776543  3589999999999998776521                                           11


Q ss_pred             CceeeccCccCeEEEEEcCC--CeEEEE----eCCCcEEEEecCCC--eEEEE--e--cCCCcEEEEEEeeCCCCEEEEE
Q 006424          279 PLQELHGHKGDVLDLAWSNS--NYLLSC----SMDKTVRMWQVGCN--QCLNV--F--DHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~--~~l~s~----s~dg~I~iwd~~~~--~~~~~--~--~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                      .-....+|....++++|++-  +.|++|    -.|..+.|||+.++  .+...  |  +.......++|.. +.+++.+|
T Consensus        94 s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaG  172 (783)
T KOG1008|consen   94 SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAG  172 (783)
T ss_pred             cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcc
Confidence            12344578889999999974  366665    23568999999876  22211  1  1334566888886 88899999


Q ss_pred             eCCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEE-ecCCceeeeEEeeccccccCCCCeEEE
Q 006424          347 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYK-ASGNDLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                      .....++++|++........-....+..+...| .+++++.-. ||.|.+|| .+.-+.+...+ .+. .......+..+
T Consensus       173 m~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i-~~~-~N~~~~~l~~~  249 (783)
T KOG1008|consen  173 MTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQII-LRN-ENKKPKQLFAL  249 (783)
T ss_pred             cccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHH-hhC-CCCcccceeeE
Confidence            999999999998543322222233566777888 677777655 99999999 44333222211 111 11122468999


Q ss_pred             EEcCCCCcEEEEEECC-CeEEEEECC
Q 006424          425 QFSRDESQRIMITSED-SKLRILDGV  449 (645)
Q Consensus       425 ~~s~~g~~~l~~~s~d-g~I~iwd~~  449 (645)
                      +|+|.....+++...| ++|+.+|+.
T Consensus       250 aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  250 AYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             EeccCCcchhhhhccCcceEEEeccc
Confidence            9999755577777766 789999854

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.97  E-value=0.015  Score=54.06  Aligned_cols=105  Identities=10%  Similarity=-0.002  Sum_probs=80.5

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCe-EEEEEc
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI-SAICYI  378 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v-~~l~~s  378 (645)
                      +++.|+..+.+.--|..+|..+........+.+-+.-  -+++++.|...|.+++.+..++........-+.| ......
T Consensus        25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d  102 (354)
T KOG4649|consen   25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD  102 (354)
T ss_pred             EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence            7888999999999999999887776666666665554  4778999999999999999999654432222222 234456


Q ss_pred             cCCCEEEEEecCCeEEEEEecCCceeee
Q 006424          379 PDGKGFIVGSITGTCHFYKASGNDLKLE  406 (645)
Q Consensus       379 p~g~~l~~g~~dg~i~iwd~~~~~~~~~  406 (645)
                      +++..+.+|+.|++.+..|.++.....+
T Consensus       103 ~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen  103 FDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             CCCceEEEecCCCcEEEecccccceEEe
Confidence            7899999999999999999988776443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=0.0015  Score=70.09  Aligned_cols=194  Identities=16%  Similarity=0.174  Sum_probs=122.3

Q ss_pred             CeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEEec-CCCc-EEEEEEeeCCCCEEEEEeCCC-----cEEEEeCCCC
Q 006424          289 DVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY-VTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEK  360 (645)
Q Consensus       289 ~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~-v~~l~~~p~~~~~l~s~s~dg-----~i~vwd~~~~  360 (645)
                      .|.|+  +++ +.++.|+.+|.|.+.+-. -+.+..+. +... |..+.... ..++|++.+.|+     .+++||+..-
T Consensus        27 ~isc~--~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   27 AISCC--SSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             ceeEE--cCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEeccccc
Confidence            44443  444 589999999999888743 23334443 3334 44444433 446888877765     4899998542


Q ss_pred             ------cEE---Eeec-----cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee--eeEEeeccccccCCCCeEEE
Q 006424          361 ------RVV---DWAD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK--LEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       361 ------~~~---~~~~-----~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~i~~i  424 (645)
                            .+.   ....     ...++.+++.+.+-+.+|+|-.+|.|..+.-.-.+-.  .......+     ..+|+.+
T Consensus       103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~-----~~pITgL  177 (933)
T KOG2114|consen  103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG-----KEPITGL  177 (933)
T ss_pred             CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC-----CCCceee
Confidence                  233   2222     3567889999999999999999999998854311111  11222222     4899999


Q ss_pred             EEcCCCCcEEEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          425 QFSRDESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       425 ~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .+..++...+++++ -..|.+|.+........ ...+.....|..+++....+++++ +..+.+|+.+..
T Consensus       178 ~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  178 ALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR  245 (933)
T ss_pred             EEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence            99999854333333 34688887663222222 344677888888887666455554 457999998754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.96  E-value=0.00013  Score=77.53  Aligned_cols=69  Identities=22%  Similarity=0.389  Sum_probs=58.2

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424          203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  282 (645)
Q Consensus       203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (645)
                      +++++|+|..-.|+.|-.-|.+.+|...+.                                             +.-..
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~---------------------------------------------e~htv   96 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---------------------------------------------ETHTV   96 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCc---------------------------------------------eeeee
Confidence            567999999989999999999999987752                                             22233


Q ss_pred             eccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC
Q 006424          283 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG  316 (645)
Q Consensus       283 l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~  316 (645)
                      ...|+.+|..+.||++| .++++..-|.|.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            45699999999999998 89999999999999865

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.88  E-value=0.0083  Score=57.46  Aligned_cols=205  Identities=13%  Similarity=0.204  Sum_probs=116.3

Q ss_pred             eeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424          281 QELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  356 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd  356 (645)
                      +.+.+-...+..++|+|+ + .++.....+.|...+. +|+.+..+.  ..+..-.+++.. ++.++++.-.++.+.+++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEE
Confidence            455666777999999997 4 5556666788888886 478887775  335678888875 555555544588999998


Q ss_pred             CCCC--c--E---EE----ee-ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecC--CceeeeEEeeccc--cccCCCC
Q 006424          357 VCEK--R--V---VD----WA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHDR--KKTSGNK  420 (645)
Q Consensus       357 ~~~~--~--~---~~----~~-~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~--~~~~~~~~~~~~~--~~~~~~~  420 (645)
                      +...  .  .   ..    +. .++..+-.++|+|.++.|+++-...-..+|.+..  .............  .......
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            8331  1  1   11    11 2445689999999988888888877777888765  2111111111110  1122345


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECCc-ceeeEeecC-------CCCCeEEEEEecCCCEEEEEeCCccEEEE
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLP-------KSGSQMSASFTTTGKHIISIGDDCRVYVW  488 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~-------~~~~i~~v~~sp~~~~l~t~s~dg~I~iw  488 (645)
                      +.+++++|....+++.+..+..|.++|... ....+....       .-...-+|+|+++|++.++ ++-+..++|
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            788999998667888888889999999552 233333321       1124678999999865555 456655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.88  E-value=0.0063  Score=62.82  Aligned_cols=205  Identities=16%  Similarity=0.205  Sum_probs=116.2

Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEE-------------------------------------------EEe
Q 006424          289 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL-------------------------------------------NVF  324 (645)
Q Consensus       289 ~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~-------------------------------------------~~~  324 (645)
                      .|+.+.|.++. .|+.|...|.|.+|.....+..                                           ..+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47888888874 8999999999999865322111                                           001


Q ss_pred             c-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec---------cCCCeEEEEEcc-----CC---CEEEE
Q 006424          325 D-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---------VRDVISAICYIP-----DG---KGFIV  386 (645)
Q Consensus       325 ~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---------~~~~v~~l~~sp-----~g---~~l~~  386 (645)
                      . ..++|++++.+  +=.+++.|..+|.+.|.|+|+..++....         ....++++.|..     |+   -.+++
T Consensus        83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            1 34678999987  56799999999999999999988776422         233678888863     33   47889


Q ss_pred             EecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE-EcCC-C------------------CcEEEEEECCCeEEEE
Q 006424          387 GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ-FSRD-E------------------SQRIMITSEDSKLRIL  446 (645)
Q Consensus       387 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~-~s~~-g------------------~~~l~~~s~dg~I~iw  446 (645)
                      |+..|.+.+|.+--.........+......+.+++..+. ++.+ |                  -.-++....+..++++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            999999999987521111111111111122335555554 3221 1                  0124555557789999


Q ss_pred             ECCcceeeEeecCCCCCeEEEEE-----ecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424          447 DGVDVIHKFKGLPKSGSQMSASF-----TTTGKHIISIGDDCRVYVWNYDELCF  495 (645)
Q Consensus       447 d~~~~~~~~~~~~~~~~i~~v~~-----sp~~~~l~t~s~dg~I~iwd~~~~~~  495 (645)
                      ...+.....+..........+.+     ...+..|++-..+|.|+++.+...+.
T Consensus       241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke  294 (395)
T PF08596_consen  241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE  294 (395)
T ss_dssp             -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred             eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence            87654444443322222333444     23567788888999999999988753

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.88  E-value=0.0058  Score=62.07  Aligned_cols=171  Identities=13%  Similarity=0.120  Sum_probs=103.9

Q ss_pred             CcEEEEecCCC-----eE--EEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-EEEeeccCCCeEEEEEcc
Q 006424          308 KTVRMWQVGCN-----QC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIP  379 (645)
Q Consensus       308 g~I~iwd~~~~-----~~--~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~v~~l~~sp  379 (645)
                      |.|.++++...     +.  +......++|++++-.  .+. ++++. ++.|++|++...+ +.....+...+...+...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence            88999999874     22  2333578889998876  344 44444 4889999998877 666444444334444445


Q ss_pred             CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc---------
Q 006424          380 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---------  450 (645)
Q Consensus       380 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~---------  450 (645)
                      .++++++|+....+.++..+........+.-..    ....++++.|-+++ ..++++..+|.+.++....         
T Consensus       138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~----~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~  212 (321)
T PF03178_consen  138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDY----QPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGD  212 (321)
T ss_dssp             ETTEEEEEESSSSEEEEEEETTTE-EEEEEEES----S-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTT
T ss_pred             cccEEEEEEcccCEEEEEEEccCCEEEEEEecC----CCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCccccccc
Confidence            577999999999999887765333232222111    13568899998776 5999999999999987431         


Q ss_pred             -ceeeEeecCCCCCeEEE---EEec--CCC------EEEEEeCCccEEE
Q 006424          451 -VIHKFKGLPKSGSQMSA---SFTT--TGK------HIISIGDDCRVYV  487 (645)
Q Consensus       451 -~~~~~~~~~~~~~i~~v---~~sp--~~~------~l~t~s~dg~I~i  487 (645)
                       .............|+++   ++.|  .+.      .++.++.+|.|.+
T Consensus       213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence             12222222234566666   4444  122      3677777887773

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.81  E-value=0.026  Score=57.33  Aligned_cols=200  Identities=15%  Similarity=0.254  Sum_probs=120.8

Q ss_pred             CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCC------CCEEEEEeC----------CCcEEEEeCCCC-----cEE-
Q 006424          308 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID------DNYFISGSI----------DGKVRIWGVCEK-----RVV-  363 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~------~~~l~s~s~----------dg~i~vwd~~~~-----~~~-  363 (645)
                      ..|++.|..+.+.+..+.  ....+.+++.....      ..++++|+.          .|.|.++++...     ++. 
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            358888888887776664  44456655443212      457777653          288999999884     332 


Q ss_pred             -EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCc-eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC
Q 006424          364 -DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND-LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  441 (645)
Q Consensus       364 -~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg  441 (645)
                       .....+++|++++-- ++ +++++ .++.|.+|++.... .... .....     ...++++....   .++++|....
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~-~~~~~-----~~~i~sl~~~~---~~I~vgD~~~  149 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKK-AFYDS-----PFYITSLSVFK---NYILVGDAMK  149 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEE-EEE-B-----SSSEEEEEEET---TEEEEEESSS
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhh-heecc-----eEEEEEEeccc---cEEEEEEccc
Confidence             345568889998865 34 44444 46899999999887 3222 21222     24677776664   4888998888


Q ss_pred             eEEEEECC--c-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEE
Q 006424          442 KLRILDGV--D-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVA  518 (645)
Q Consensus       442 ~I~iwd~~--~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  518 (645)
                      .+.++...  . ....+........++++.|-++++.++.+..+|.+.++.++..................|+-...++.
T Consensus       150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~  229 (321)
T PF03178_consen  150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNS  229 (321)
T ss_dssp             SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEE
T ss_pred             CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccce
Confidence            88877433  2 23333333345678899998777899999999999999987432211111102333445665555655


Q ss_pred             E
Q 006424          519 V  519 (645)
Q Consensus       519 v  519 (645)
                      +
T Consensus       230 ~  230 (321)
T PF03178_consen  230 F  230 (321)
T ss_dssp             E
T ss_pred             E
Confidence            5

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.80  E-value=0.0092  Score=59.96  Aligned_cols=184  Identities=11%  Similarity=0.018  Sum_probs=92.3

Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeC-CCCEEEEEe----------------------
Q 006424          293 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI-DDNYFISGS----------------------  347 (645)
Q Consensus       293 l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~-~~~~l~s~s----------------------  347 (645)
                      ..+++++ .++-...+..|+-.|+++.+....+. ....+-...|... ++..++-.-                      
T Consensus        86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~  165 (386)
T PF14583_consen   86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEAR  165 (386)
T ss_dssp             -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred             eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence            3445554 55555556788888888887666665 3344444556431 344433211                      


Q ss_pred             CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC-----eEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424          348 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       348 ~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      ....|.-.|+.+++...+......+..+.|+|....+++=+..|     .-++|-++........+..+.    ....+.
T Consensus       166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~----~~e~~g  241 (386)
T PF14583_consen  166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM----EGESVG  241 (386)
T ss_dssp             --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-------TTEEEE
T ss_pred             CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC----CCcccc
Confidence            12346667888888888888888999999999665555544433     247787775544333222111    134455


Q ss_pred             EEEEcCCCCcEEEEEE-C---CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 006424          423 GIQFSRDESQRIMITS-E---DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD  482 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s-~---dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d  482 (645)
                      .=-|.|+|..+...+. .   +..|.-+|..+.......  .......+.-++||++++-=+.|
T Consensus       242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EMPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-SEEEEEE-TTSSEEEEEE--
T ss_pred             cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eCCceeeeEEcCCCCEEEecCCC
Confidence            5668999865555443 2   334555666543322211  11134456667899888754443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.75  E-value=0.017  Score=60.43  Aligned_cols=174  Identities=14%  Similarity=0.180  Sum_probs=95.2

Q ss_pred             cEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec---c-----CCCeEEEEEcc
Q 006424          309 TVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---V-----RDVISAICYIP  379 (645)
Q Consensus       309 ~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~-----~~~v~~l~~sp  379 (645)
                      .|.+|+.. |+.+..+. ..+.+.++.|..  ...|++...||.+++||+.+.. ....+   .     ...+....+..
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~  137 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK  137 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence            58889876 55666654 237899999986  4556667789999999997554 11111   1     11122223333


Q ss_pred             CCCEEEEEecCCeEEEEEecCCceeeeEE-eeccccc-cC-CCCeEE-EEEcCCCCcEEEEEECCCeEEEEECCcceeeE
Q 006424          380 DGKGFIVGSITGTCHFYKASGNDLKLEKV-DFHDRKK-TS-GNKITG-IQFSRDESQRIMITSEDSKLRILDGVDVIHKF  455 (645)
Q Consensus       380 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~~-~~-~~~i~~-i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~  455 (645)
                      +|  +++-..++.+.+.+--......... ....... .+ ...... ..++.+. ...+....++.+.+.+......  
T Consensus       138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~--  212 (410)
T PF04841_consen  138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ--  212 (410)
T ss_pred             CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccccc--
Confidence            44  4444555555444322221111110 0111000 00 001111 2344443 4455555566677555332211  


Q ss_pred             eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          456 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       456 ~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                        ....+++..|+.||+|++||.-..+|.+.+.+.+-.
T Consensus       213 --i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  213 --IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             --ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence              123568999999999999999999999999876544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.74  E-value=0.0049  Score=64.99  Aligned_cols=135  Identities=16%  Similarity=0.170  Sum_probs=94.7

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      |...|.--+++..+++++.|+.-|.+.+|+-..+..                                            
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~--------------------------------------------   67 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM--------------------------------------------   67 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhh--------------------------------------------
Confidence            445566666777889999999999999998765321                                            


Q ss_pred             CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEE-----EEe--cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL-----NVF--DHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~-----~~~--~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                      ......+-.+.+..+..+++. +++.|+..|.|.++-+..+.+-     ...  .|...|+|++|++ ++..+++|...|
T Consensus        68 ~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~G  146 (726)
T KOG3621|consen   68 RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQG  146 (726)
T ss_pred             hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCc
Confidence            112222344555666677766 6778888899999987654321     111  2788999999999 999999999999


Q ss_pred             cEEEEeCCCC-----cEEEeeccCCCeEEEEEc
Q 006424          351 KVRIWGVCEK-----RVVDWADVRDVISAICYI  378 (645)
Q Consensus       351 ~i~vwd~~~~-----~~~~~~~~~~~v~~l~~s  378 (645)
                      +|.+-.+...     ....+....+.|-.+.+.
T Consensus       147 kv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  147 KVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             eEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            9999888762     122344556666666654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.74  E-value=0.0019  Score=66.41  Aligned_cols=82  Identities=12%  Similarity=0.178  Sum_probs=59.5

Q ss_pred             CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccC----------------
Q 006424          306 MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR----------------  369 (645)
Q Consensus       306 ~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----------------  369 (645)
                      ..+.+.++|+++++..........+....|+| +++.++... ++.|++++..++...++....                
T Consensus        21 ~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE   98 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE   98 (353)
T ss_dssp             EEEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred             cceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence            34679999999987766665567789999999 899988886 678999998887665543221                


Q ss_pred             --CCeEEEEEccCCCEEEEEec
Q 006424          370 --DVISAICYIPDGKGFIVGSI  389 (645)
Q Consensus       370 --~~v~~l~~sp~g~~l~~g~~  389 (645)
                        +.-.++-|||||++|+....
T Consensus        99 v~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   99 VFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             TSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceEECCCCCEEEEEEE
Confidence              22457889999999887643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.73  E-value=0.003  Score=67.19  Aligned_cols=108  Identities=15%  Similarity=0.079  Sum_probs=76.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCC-----CcEEEeeccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCCceeee-EEe--
Q 006424          339 DDNYFISGSIDGKVRIWGVCE-----KRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLE-KVD--  409 (645)
Q Consensus       339 ~~~~l~s~s~dg~i~vwd~~~-----~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~-~~~--  409 (645)
                      ++++...  .++.|.+.|.++     ...............+.++|||+++++++. ++++.++|+........ .+.  
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~  364 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR  364 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence            5666655  357899999998     567777788888999999999998887665 88999999987542110 000  


Q ss_pred             --eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424          410 --FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  450 (645)
Q Consensus       410 --~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~  450 (645)
                        .... ..-+......+|.++| ..+.+..-|..|..||+..
T Consensus       365 ~~vvae-vevGlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        365 DAVVAE-PELGLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ceEEEe-eccCCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence              0000 0012334567899997 6788888899999999765

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.72  E-value=0.001  Score=69.93  Aligned_cols=141  Identities=9%  Similarity=0.123  Sum_probs=100.5

Q ss_pred             CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec--cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee
Q 006424          327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  404 (645)
Q Consensus       327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~  404 (645)
                      ...|.--+++. .+++++.|+.-|.+++|+-.++.......  ..+.+..++.+++..++|+|+..|.|.++-+.... +
T Consensus        33 ~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~-p  110 (726)
T KOG3621|consen   33 PARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL-P  110 (726)
T ss_pred             cceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC-C
Confidence            33344444555 78999999999999999988877665444  56667778899999999999999999999988733 3


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-ceee---EeecCCCCCeEEEEEe
Q 006424          405 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHK---FKGLPKSGSQMSASFT  470 (645)
Q Consensus       405 ~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~---~~~~~~~~~i~~v~~s  470 (645)
                      .....+......|...|++++|++++ ..+++|...|.|..-.+.. ....   .......+.|..+...
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            33332333333467899999999998 8999999999998877654 1111   1111235567666653

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.53  E-value=0.0024  Score=70.43  Aligned_cols=147  Identities=18%  Similarity=0.179  Sum_probs=97.6

Q ss_pred             CCCEEEEE-eCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccC-------CCEEEEEecCCeEEEEEecCCceeeeEEee
Q 006424          339 DDNYFISG-SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD-------GKGFIVGSITGTCHFYKASGNDLKLEKVDF  410 (645)
Q Consensus       339 ~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~-------g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  410 (645)
                      +.++|+.- .....|+-.|+..|+++.--.....+.-..+.|+       ....++|-.+..+..||.+-......  ..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v--~~  569 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV--DS  569 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee--ec
Confidence            34444443 3457899999999998874333333323344453       33567788899999999986542111  11


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      ..+........+|++-+.+|  +||+|+.+|.||+||--.....-....-..+|.+|+.+.||++|++.+ +..+.+++.
T Consensus       570 ~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  570 QSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             cccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            22222334678899988887  899999999999999432222222233568999999999999988776 567777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.48  E-value=0.082  Score=52.28  Aligned_cols=192  Identities=13%  Similarity=0.165  Sum_probs=104.4

Q ss_pred             CeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEE---------------EecCCCcEEEEE-EeeCCCCEEEEEeCCCc
Q 006424          289 DVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLN---------------VFDHHNYVTCVQ-FNPIDDNYFISGSIDGK  351 (645)
Q Consensus       289 ~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~---------------~~~~~~~v~~l~-~~p~~~~~l~s~s~dg~  351 (645)
                      .|..+...++ +.++.- .|+.+.++++..-....               .+.....+...+ -....+...+.......
T Consensus        37 ~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~  115 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK  115 (275)
T ss_pred             eEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence            3888888876 444443 35999999986544333               222333455444 11213334444444568


Q ss_pred             EEEEeCCCC-----cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc------cccCCCC
Q 006424          352 VRIWGVCEK-----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR------KKTSGNK  420 (645)
Q Consensus       352 i~vwd~~~~-----~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~  420 (645)
                      |.+|.....     +...-....+.+.+++|.  ++.+++|..+ ...+.|+.+..... .......      ......+
T Consensus       116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~-l~~~~~~~~~~~~~~~~~~~  191 (275)
T PF00780_consen  116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSE-LLDPSDSSSSFKSRNSSSKP  191 (275)
T ss_pred             EEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceE-EeCccCCcchhhhcccCCCc
Confidence            999887652     334445567889999998  5678888755 46788888554321 1111110      0111233


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECC-ccee--eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGV-DVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  495 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~~~--~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~  495 (645)
                      +..+....+  .+|++.  |..-.+.|.. ...+  .+..   .....++++  ...||+..+.++ |.||++.+++.
T Consensus       192 ~~~~~~~~~--e~Ll~~--~~~g~fv~~~G~~~r~~~i~W---~~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~l  259 (275)
T PF00780_consen  192 LGIFQLSDN--EFLLCY--DNIGVFVNKNGEPSRKSTIQW---SSAPQSVAY--SSPYLIAFSSNS-IEVRSLETGEL  259 (275)
T ss_pred             eEEEEeCCc--eEEEEe--cceEEEEcCCCCcCcccEEEc---CCchhEEEE--ECCEEEEECCCE-EEEEECcCCcE
Confidence            444444433  455542  3333333422 1111  2222   234556666  356888877654 99999999854

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.45  E-value=0.071  Score=57.47  Aligned_cols=182  Identities=12%  Similarity=0.102  Sum_probs=101.2

Q ss_pred             CCCcEEEEecCCCeEEEEecCC-C--------------------cE-EEEEEeeCCCCEEEEEeCCC-------------
Q 006424          306 MDKTVRMWQVGCNQCLNVFDHH-N--------------------YV-TCVQFNPIDDNYFISGSIDG-------------  350 (645)
Q Consensus       306 ~dg~I~iwd~~~~~~~~~~~~~-~--------------------~v-~~l~~~p~~~~~l~s~s~dg-------------  350 (645)
                      .++.+..+|..+|+.+-.+... .                    .+ ...++.+ .+..++.++.++             
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~  251 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD  251 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence            4678889999999887766421 0                    01 1234444 456777777665             


Q ss_pred             -----cEEEEeCCCCcEEEeeccC-C------CeEEEEEc----cCCC---EEEEEecCCeEEEEEecCCceeeeEEeec
Q 006424          351 -----KVRIWGVCEKRVVDWADVR-D------VISAICYI----PDGK---GFIVGSITGTCHFYKASGNDLKLEKVDFH  411 (645)
Q Consensus       351 -----~i~vwd~~~~~~~~~~~~~-~------~v~~l~~s----p~g~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  411 (645)
                           .|.-+|..+++..-..... .      ......+.    -+|.   .+++++.+|.+..+|..+++....... .
T Consensus       252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~-~  330 (488)
T cd00216         252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE-V  330 (488)
T ss_pred             CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe-e
Confidence                 6999999998877543211 1      00111111    1333   678888999999999998876543211 1


Q ss_pred             cccccCCCCeEEEEEcCCCCcEEEEE------------------ECCCeEEEEECCcceeeEeecCCC--------CCeE
Q 006424          412 DRKKTSGNKITGIQFSRDESQRIMIT------------------SEDSKLRILDGVDVIHKFKGLPKS--------GSQM  465 (645)
Q Consensus       412 ~~~~~~~~~i~~i~~s~~g~~~l~~~------------------s~dg~I~iwd~~~~~~~~~~~~~~--------~~i~  465 (645)
                      .         ..+..+| +  .++.+                  ..+|.+.-.|..+.....+.....        .+..
T Consensus       331 ~---------~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~  398 (488)
T cd00216         331 E---------QPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHW  398 (488)
T ss_pred             c---------cccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCccc
Confidence            0         0112222 1  11111                  134556666655433333321110        1111


Q ss_pred             EEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCccc
Q 006424          466 SASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK  501 (645)
Q Consensus       466 ~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~  501 (645)
                      .-.....+..|+.++.||.|+.+|.++++.......
T Consensus       399 ~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         399 GGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            111112567899999999999999999986665543

The alignment model contains an 8-bladed beta-propeller.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.44  E-value=0.01  Score=48.21  Aligned_cols=102  Identities=24%  Similarity=0.289  Sum_probs=71.1

Q ss_pred             EEEEEECC---CC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          203 IWTLKFSP---DG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       203 V~~l~fsp---dg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      |++|++..   || +.|+.||.|..|++|+-..                                               
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------------------------------   34 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------------------------------------------   34 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------------------------------
Confidence            66777654   43 4899999999999997543                                               


Q ss_pred             CceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCC---CEEEEEeCCCcEEE
Q 006424          279 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD---NYFISGSIDGKVRI  354 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~---~~l~s~s~dg~i~v  354 (645)
                      .+..+. -.+.|++++-...+.++.+-.+|+|-+|+-.  ..+...+....+.++.+...++   ..|++|-.+|.|-+
T Consensus        35 ~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   35 IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            233333 4567888887777899999999999999752  3333444455577777764232   26888888887743

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.43  E-value=0.037  Score=53.02  Aligned_cols=202  Identities=13%  Similarity=0.148  Sum_probs=107.1

Q ss_pred             cccccccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          194 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      +.+.+-...+..++|+|+.+ ++++....+.|...+.+.                                         
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-----------------------------------------   53 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-----------------------------------------   53 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------------------------------------
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-----------------------------------------
Confidence            44666667799999999865 555666677777777542                                         


Q ss_pred             eeccCCCceeecc-CccCeEEEEEcCCCeEEEE-eCCCcEEEEecCCCe------EEEEe--c----CCCcEEEEEEeeC
Q 006424          273 FQIEESPLQELHG-HKGDVLDLAWSNSNYLLSC-SMDKTVRMWQVGCNQ------CLNVF--D----HHNYVTCVQFNPI  338 (645)
Q Consensus       273 ~~~~~~~~~~l~~-h~~~V~~l~~s~~~~l~s~-s~dg~I~iwd~~~~~------~~~~~--~----~~~~v~~l~~~p~  338 (645)
                           +.++.+.- -.+..-.+++..++.++.. -.++.+.+.++....      ....+  +    ++..+-.++|+| 
T Consensus        54 -----~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-  127 (248)
T PF06977_consen   54 -----KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-  127 (248)
T ss_dssp             ------EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-
T ss_pred             -----CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-
Confidence                 22333221 1355677888777754444 458899999883321      11222  1    445789999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCC---CcEEE---e------eccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceee
Q 006424          339 DDNYFISGSIDGKVRIWGVCE---KRVVD---W------ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKL  405 (645)
Q Consensus       339 ~~~~l~s~s~dg~i~vwd~~~---~~~~~---~------~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~  405 (645)
                      .++.|+.+-...-..+|.+..   .....   .      ......+.+++++|.. .+++.+.....+..+|..+...  
T Consensus       128 ~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~--  205 (248)
T PF06977_consen  128 KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVV--  205 (248)
T ss_dssp             TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EE--
T ss_pred             CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEE--
Confidence            666666777666667776653   11111   1      1123457899999964 5666677778888888554422  


Q ss_pred             eEEeeccccc---cCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424          406 EKVDFHDRKK---TSGNKITGIQFSRDESQRIMITSEDSKLRIL  446 (645)
Q Consensus       406 ~~~~~~~~~~---~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw  446 (645)
                      ....+.....   ..-...-.|+|.++|  .|+..++-+..+++
T Consensus       206 ~~~~L~~g~~gl~~~~~QpEGIa~d~~G--~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  206 SSLSLDRGFHGLSKDIPQPEGIAFDPDG--NLYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred             EEEEeCCcccCcccccCCccEEEECCCC--CEEEEcCCceEEEe
Confidence            2222222110   011346789999997  56666677766655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.061  Score=55.88  Aligned_cols=200  Identities=15%  Similarity=0.144  Sum_probs=135.0

Q ss_pred             EEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC---CCcEEEEeCCCCcEEEe
Q 006424          291 LDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI---DGKVRIWGVCEKRVVDW  365 (645)
Q Consensus       291 ~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~---dg~i~vwd~~~~~~~~~  365 (645)
                      ..++.++.+  .+++...++.|.+.|..+.+.............++++| +++.+.++..   ++++.+.|..+.+....
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            355666655  45555567899999988888887776555778899999 7766666555   68899999988887765


Q ss_pred             eccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC--Ce
Q 006424          366 ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--SK  442 (645)
Q Consensus       366 ~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d--g~  442 (645)
                      ......-..++++|+|+.+++.. .++.+.+.|........   ...............+.++|+|....++...+  +.
T Consensus       156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~---~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR---GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---cccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            44433348999999999777765 78899999976654421   01000111123456788999985444444444  58


Q ss_pred             EEEEECCcceeeEeecCCCC-CeEEEEEecCCCEEEEEeC-CccEEEEeCCCCC
Q 006424          443 LRILDGVDVIHKFKGLPKSG-SQMSASFTTTGKHIISIGD-DCRVYVWNYDELC  494 (645)
Q Consensus       443 I~iwd~~~~~~~~~~~~~~~-~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~  494 (645)
                      +...|............-.. ....+..+|+|+.+.+... .+.+.+-|..+..
T Consensus       233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence            88888775433332111111 4567889999999988854 4788888877653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.065  Score=53.32  Aligned_cols=175  Identities=14%  Similarity=0.182  Sum_probs=99.8

Q ss_pred             cCCCeEEEEeCCCcEEEEecCCCeEEEEec------CCCcEEEEEEeeCCCCEEEEEeC-----------CCcEEEEeCC
Q 006424          296 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSI-----------DGKVRIWGVC  358 (645)
Q Consensus       296 s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~------~~~~v~~l~~~p~~~~~l~s~s~-----------dg~i~vwd~~  358 (645)
                      ...+.|+++..  .+.+++.+++..+..+.      .....+.+...| ++.+.++...           -|.|+.+|. 
T Consensus        75 d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-  150 (307)
T COG3386          75 DAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-  150 (307)
T ss_pred             cCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-
Confidence            34456666654  36666766555533321      224566778888 7776665433           133555554 


Q ss_pred             CCcEEE-eeccCCCeEEEEEccCCCEEEEEecC-CeEEEEEecCCceeee----EEeeccccccCCCCeEEEEEcCCCCc
Q 006424          359 EKRVVD-WADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       359 ~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~d-g~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                      .+.... ...+-..-+.++||||++.|+.+... +.|.-|++........    .....    ...+..-.++...+| .
T Consensus       151 ~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~----~~~G~PDG~~vDadG-~  225 (307)
T COG3386         151 DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFD----EEPGLPDGMAVDADG-N  225 (307)
T ss_pred             CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEcc----CCCCCCCceEEeCCC-C
Confidence            344443 44446667889999999988887654 7888887763111111    11111    112445567778887 4


Q ss_pred             EEEEEECCC-eEEEEECC-cceeeEeecCCCCCeEEEEEe-cCCCEEEEEeC
Q 006424          433 RIMITSEDS-KLRILDGV-DVIHKFKGLPKSGSQMSASFT-TTGKHIISIGD  481 (645)
Q Consensus       433 ~l~~~s~dg-~I~iwd~~-~~~~~~~~~~~~~~i~~v~~s-p~~~~l~t~s~  481 (645)
                      +.+++..+| .|.+|+.. .....+..  ....+++++|- |+.+.|+..+.
T Consensus       226 lw~~a~~~g~~v~~~~pdG~l~~~i~l--P~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         226 LWVAAVWGGGRVVRFNPDGKLLGEIKL--PVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EEEecccCCceEEEECCCCcEEEEEEC--CCCCCccceEeCCCcCEEEEEec
Confidence            554444443 89999876 33444444  33677788884 45555555443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.34  E-value=0.29  Score=51.70  Aligned_cols=241  Identities=15%  Similarity=0.184  Sum_probs=126.8

Q ss_pred             cEEEEEECCCCCEEEEE-eCCC----cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          202 CIWTLKFSPDGRYLASG-GEDG----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sg-s~Dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      .+....+||||++||-+ +..|    .+++.|+.++....                                        
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~----------------------------------------  164 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP----------------------------------------  164 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE----------------------------------------
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC----------------------------------------
Confidence            44578899999988865 4444    49999998843211                                        


Q ss_pred             CCCceeeccCccCeEEEEEcCCC-eEEEEeCC-----------CcEEEEecCCCeE--EEEec--CCCc-EEEEEEeeCC
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-----------KTVRMWQVGCNQC--LNVFD--HHNY-VTCVQFNPID  339 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~d-----------g~I~iwd~~~~~~--~~~~~--~~~~-v~~l~~~p~~  339 (645)
                          ..+..  ..-..+.|.+++ .|+....+           ..|+.|.+.+...  ...++  .... ...+..++ +
T Consensus       165 ----d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d  237 (414)
T PF02897_consen  165 ----DGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-D  237 (414)
T ss_dssp             ----EEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-T
T ss_pred             ----Ccccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-c
Confidence                11111  111238999885 44433322           2478888876543  24443  2222 56788888 8


Q ss_pred             CCEEEEEeCC----CcEEEEeCCCC-----cEEEeeccCCCeEEEEEccCCCEEEEEe---cCCeEEEEEecCCceeeeE
Q 006424          340 DNYFISGSID----GKVRIWGVCEK-----RVVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEK  407 (645)
Q Consensus       340 ~~~l~s~s~d----g~i~vwd~~~~-----~~~~~~~~~~~v~~l~~sp~g~~l~~g~---~dg~i~iwd~~~~~~~~~~  407 (645)
                      +++++..+..    ..+++.|+..+     ....+......+....-+..+.+++...   ..+.|.-.++.........
T Consensus       238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~  317 (414)
T PF02897_consen  238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWW  317 (414)
T ss_dssp             SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEE
T ss_pred             ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccce
Confidence            8887654432    34788888774     4444444444443333333443443332   2356666777665531111


Q ss_pred             -EeeccccccCCCCeEEEEEcCCCCcEEEEEECCC--eEEEEECC-cceeeEeecCCCCCeEEEEEecCCCEEEE-Ee-C
Q 006424          408 -VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIIS-IG-D  481 (645)
Q Consensus       408 -~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg--~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l~t-~s-~  481 (645)
                       .-+...   ....+..+....+  .+++....++  .|++++.. ............+.|..+...++++.+.. .+ .
T Consensus       318 ~~l~~~~---~~~~l~~~~~~~~--~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~  392 (414)
T PF02897_consen  318 TVLIPED---EDVSLEDVSLFKD--YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSF  392 (414)
T ss_dssp             EEEE--S---SSEEEEEEEEETT--EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEET
T ss_pred             eEEcCCC---CceeEEEEEEECC--EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCC
Confidence             112211   0124555555443  5666666664  67888987 33332222223445666665566554432 22 2


Q ss_pred             --CccEEEEeCCCCC
Q 006424          482 --DCRVYVWNYDELC  494 (645)
Q Consensus       482 --dg~I~iwd~~~~~  494 (645)
                        -++++.||+.+++
T Consensus       393 ~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  393 TTPPTVYRYDLATGE  407 (414)
T ss_dssp             TEEEEEEEEETTTTC
T ss_pred             CCCCEEEEEECCCCC
Confidence              3688888988874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>smart00320 WD40 WD40 repeats

Probab=97.33  E-value=0.00035  Score=44.71  Aligned_cols=36  Identities=39%  Similarity=0.939  Sum_probs=32.4

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEE
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH  228 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd  228 (645)
                      ...+.+|.+.|+++.|++++.++++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345678999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.32  E-value=0.21  Score=49.53  Aligned_cols=199  Identities=13%  Similarity=0.116  Sum_probs=112.0

Q ss_pred             EEEcCCC-eEE--EEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC-CCcEEE----
Q 006424          293 LAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVD----  364 (645)
Q Consensus       293 l~~s~~~-~l~--s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~-~~~~~~----  364 (645)
                      ++++.++ +++  -.+--.+|.|-|+..++.+..+...+...   .-|..++-|.+-+.||.+.-..+. .|+...    
T Consensus       100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~---iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~  176 (342)
T PF06433_consen  100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWL---IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK  176 (342)
T ss_dssp             EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEE---EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred             eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEE---EEecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence            3556665 333  33445678999999999988887665332   233234567788889999888886 344332    


Q ss_pred             -eeccCCC-eEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-EEeecccccc----CCCCeEEEEEcCCCCcEEEEE
Q 006424          365 -WADVRDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKT----SGNKITGIQFSRDESQRIMIT  437 (645)
Q Consensus       365 -~~~~~~~-v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~----~~~~i~~i~~s~~g~~~l~~~  437 (645)
                       +....++ +..-.+...+..++--+.+|.|+-.|+........ .+........    ..+...-+++++....+++..
T Consensus       177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred             ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence             1112222 22334445555666688899999999987764332 2222110000    012233466665432333332


Q ss_pred             EC-------C--CeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-EEEEEe-CCccEEEEeCCCCCc
Q 006424          438 SE-------D--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVYVWNYDELCF  495 (645)
Q Consensus       438 s~-------d--g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s-~dg~I~iwd~~~~~~  495 (645)
                      ..       |  ..|.++|+.+.....+.. -..++.++..+.+.+ +|++.+ .++.+.+||..+++.
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred             cCCCCCCccCCceEEEEEECCCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence            21       1  257777877554444432 133577899998876 665544 579999999998853

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.27  E-value=0.17  Score=47.37  Aligned_cols=101  Identities=12%  Similarity=0.056  Sum_probs=69.7

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEE-EEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCC-eEEE
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCV-QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAI  375 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l-~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-v~~l  375 (645)
                      .++++.|...|.+++.+..+|.....+..-+.|.+- ...+ ++..+..|+.|++.+..|.++..++......+. ..+-
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP  141 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP  141 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence            457999999999999999999887777644444433 3344 899999999999999999998777664444333 3344


Q ss_pred             EEccCCCEEEEEecCCeEEEEEec
Q 006424          376 CYIPDGKGFIVGSITGTCHFYKAS  399 (645)
Q Consensus       376 ~~sp~g~~l~~g~~dg~i~iwd~~  399 (645)
                      +..|-...|+.+...|.+.--..+
T Consensus       142 ~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  142 VIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             eecCCCceEEEEeccceEEEEccC
Confidence            555633345555555655444433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.19  Score=52.22  Aligned_cols=156  Identities=17%  Similarity=0.216  Sum_probs=107.1

Q ss_pred             CeEEEEEcCCC-eEEEEe---CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEeCCCCcEE
Q 006424          289 DVLDLAWSNSN-YLLSCS---MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVV  363 (645)
Q Consensus       289 ~V~~l~~s~~~-~l~s~s---~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~  363 (645)
                      ....+++++++ .++.+.   .++++.+.|-.+++..........-..+++.| +++.++.+. .++.|.+.|.......
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCccee
Confidence            55678888886 544443   37899999999998888754333338999999 888655554 7889999998877766


Q ss_pred             E-----eeccCCCeEEEEEccCCCEEEEEecC---CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          364 D-----WADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       364 ~-----~~~~~~~v~~l~~sp~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      .     ..........+.++|+|+++.+....   +.+...|..+............     . ....+..+|+| ..+.
T Consensus       196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~-----~-~~~~v~~~p~g-~~~y  268 (381)
T COG3391         196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS-----G-APRGVAVDPAG-KAAY  268 (381)
T ss_pred             ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc-----C-CCCceeECCCC-CEEE
Confidence            4     23334456778999999977776554   4888888877654332111111     1 34568899998 4555


Q ss_pred             EE-ECCCeEEEEECCcce
Q 006424          436 IT-SEDSKLRILDGVDVI  452 (645)
Q Consensus       436 ~~-s~dg~I~iwd~~~~~  452 (645)
                      +. +..+.+.+.|.....
T Consensus       269 v~~~~~~~V~vid~~~~~  286 (381)
T COG3391         269 VANSQGGTVSVIDGATDR  286 (381)
T ss_pred             EEecCCCeEEEEeCCCCc
Confidence            44 556899999976533

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.21  E-value=0.017  Score=46.91  Aligned_cols=103  Identities=20%  Similarity=0.345  Sum_probs=72.1

Q ss_pred             EEEEEEeeCCC---CEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424          330 VTCVQFNPIDD---NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  406 (645)
Q Consensus       330 v~~l~~~p~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~  406 (645)
                      |+++++...++   +.|++|+.|..|++|+-.  .++.-....+.|++++-... ..++.+..+|+|-+|+-......  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWR--   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWR--   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeee--
Confidence            56676665333   689999999999999753  55555556677888887665 57999999999999987544332  


Q ss_pred             EEeeccccccCCCCeEEEEEc---CCCCcEEEEEECCCeEEE
Q 006424          407 KVDFHDRKKTSGNKITGIQFS---RDESQRIMITSEDSKLRI  445 (645)
Q Consensus       407 ~~~~~~~~~~~~~~i~~i~~s---~~g~~~l~~~s~dg~I~i  445 (645)
                         ....     ..++++.+.   .+|...|++|-.+|.|-+
T Consensus        77 ---iKSK-----~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   77 ---IKSK-----NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ---eccC-----CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence               2221     346666654   345567999988888753

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.19  E-value=0.4  Score=50.28  Aligned_cols=194  Identities=11%  Similarity=0.145  Sum_probs=99.8

Q ss_pred             CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec---CCCcE-----EEEEEeeCCCCEEEEEeC
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYV-----TCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v-----~~l~~~p~~~~~l~s~s~  348 (645)
                      ++.+..+.=-.+.|.++.|+.+..|+....||.++++|+. |+....++   ....|     .+..+.. +| .++ -..
T Consensus        70 G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~-~G-ivv-Lt~  145 (410)
T PF04841_consen   70 GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYK-NG-IVV-LTG  145 (410)
T ss_pred             CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCC-CC-EEE-ECC
Confidence            3344443322389999999988788899999999999986 33311111   11122     2222222 33 322 233


Q ss_pred             CCcEEEEeCCCCc-E-EEeeccCCCeE----------EEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424          349 DGKVRIWGVCEKR-V-VDWADVRDVIS----------AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  416 (645)
Q Consensus       349 dg~i~vwd~~~~~-~-~~~~~~~~~v~----------~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  416 (645)
                      ++.+.+..--... . ...........          ...++.+....+....++.+.+.+-.....      ..     
T Consensus       146 ~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------i~-----  214 (410)
T PF04841_consen  146 NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ------ID-----  214 (410)
T ss_pred             CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc------cc-----
Confidence            4555444322211 1 11111111000          022334444444444455555333222110      11     


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                      ..+++..++.||+| ++++.-..+|.+.+....  +....+... .......+.|.-+...++.-  ...+.+..
T Consensus       215 ~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  215 SDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             CCCCeEEEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            12689999999998 799999999999998743  333333332 23456778886554433333  33455544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.19  E-value=0.059  Score=59.86  Aligned_cols=119  Identities=18%  Similarity=0.247  Sum_probs=82.0

Q ss_pred             CCCceeeccCccC-eEEEEEcC------CCeEEEEeCCCcEEEEecCCC--eEEE----EecCCCcEEEEEEeeCCCCEE
Q 006424          277 ESPLQELHGHKGD-VLDLAWSN------SNYLLSCSMDKTVRMWQVGCN--QCLN----VFDHHNYVTCVQFNPIDDNYF  343 (645)
Q Consensus       277 ~~~~~~l~~h~~~-V~~l~~s~------~~~l~s~s~dg~I~iwd~~~~--~~~~----~~~~~~~v~~l~~~p~~~~~l  343 (645)
                      ++.+..+..|... |..++-..      +...+.|-.+..+..||.+-.  +++.    .+.......|++-..  ..+|
T Consensus       514 GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~--~G~i  591 (794)
T PF08553_consen  514 GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE--DGYI  591 (794)
T ss_pred             CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC--CceE
Confidence            4556666666543 55554321      125677888889999998753  2332    223455677877764  5689


Q ss_pred             EEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEe
Q 006424          344 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  398 (645)
Q Consensus       344 ~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~  398 (645)
                      |+|+.+|.||+||--+.+..+ +.+...+|..|+.+.||+++++.+ +..+.+++.
T Consensus       592 avgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  592 AVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             EEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            999999999999954433333 557789999999999999988665 456667665

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.0019  Score=67.14  Aligned_cols=97  Identities=16%  Similarity=0.220  Sum_probs=77.7

Q ss_pred             CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeE-EEEEccCCCEEEEEecCCeEEEEEecCCcee
Q 006424          326 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS-AICYIPDGKGFIVGSITGTCHFYKASGNDLK  404 (645)
Q Consensus       326 ~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~-~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~  404 (645)
                      ....+.-+.|+| .-.++|.+..+|.|.+..+.-.++..+.-++..++ +++|.|||+.+|+|-.||+|++.|...+...
T Consensus        19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            345678899999 88999999999999999998777777775666666 9999999999999999999999999887653


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCC
Q 006424          405 LEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       405 ~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      ...      .......|.++-|++.
T Consensus        98 ~~~------~~s~e~~is~~~w~~~  116 (665)
T KOG4640|consen   98 VSF------LFSVETDISKGIWDRI  116 (665)
T ss_pred             ecc------ccccccchheeecccc
Confidence            321      1112367888888753

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.07  E-value=0.024  Score=59.16  Aligned_cols=156  Identities=13%  Similarity=0.148  Sum_probs=96.1

Q ss_pred             CCcEEEEEEeeCCCCEEEEEe---CC-CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEE-ecCCe--EEEEEec
Q 006424          327 HNYVTCVQFNPIDDNYFISGS---ID-GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGT--CHFYKAS  399 (645)
Q Consensus       327 ~~~v~~l~~~p~~~~~l~s~s---~d-g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~--i~iwd~~  399 (645)
                      ...+..-+|+| ++..++..+   .. ..++++|+.+++........+.-...+|+|||+.++.. ..||.  |+++|+.
T Consensus       192 ~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         192 GSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             CcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            34566678888 666544432   22 35999999988776666666666677899999977765 45665  5566666


Q ss_pred             CCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE--ECCc-ceeeEeecCCCCCeEEEEEecCCCEE
Q 006424          400 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVD-VIHKFKGLPKSGSQMSASFTTTGKHI  476 (645)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw--d~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l  476 (645)
                      +.....  +. ..     .+.-+.-.|+|+|+.++++.+..|.-.||  +... ....+...  .+.-..-.|+|||++|
T Consensus       271 ~~~~~~--Lt-~~-----~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~--~~~~~~p~~SpdG~~i  340 (425)
T COG0823         271 GKNLPR--LT-NG-----FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS--GGGNSNPVWSPDGDKI  340 (425)
T ss_pred             CCccee--cc-cC-----CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc--CCCCcCccCCCCCCEE
Confidence            655322  11 11     12233667999997777787777765555  4332 12222221  1111266789999999


Q ss_pred             EEEeC-Ccc--EEEEeCCCC
Q 006424          477 ISIGD-DCR--VYVWNYDEL  493 (645)
Q Consensus       477 ~t~s~-dg~--I~iwd~~~~  493 (645)
                      +..+. +|.  |.+.|+.++
T Consensus       341 ~~~~~~~g~~~i~~~~~~~~  360 (425)
T COG0823         341 VFESSSGGQWDIDKNDLASG  360 (425)
T ss_pred             EEEeccCCceeeEEeccCCC
Confidence            88774 344  555555544

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.02  E-value=0.018  Score=58.95  Aligned_cols=137  Identities=17%  Similarity=0.261  Sum_probs=91.9

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCC-------EEEEEeCCCcEEEEeCCCCc--EEEe-ec--
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN-------YFISGSIDGKVRIWGVCEKR--VVDW-AD--  367 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~-------~l~s~s~dg~i~vwd~~~~~--~~~~-~~--  367 (645)
                      .|.++.....++-.|++.|+.+........|.-+.+.| +.+       .-+.|-.|..|.-||.|-..  .+.. ..  
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            45577777889999999999999988666687778877 432       23456668889999987422  2222 12  


Q ss_pred             --cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEE
Q 006424          368 --VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI  445 (645)
Q Consensus       368 --~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~i  445 (645)
                        ......|++-..+| ++++|+.+|.|++||--.......   ++    +-+.+|..+..+.+| .++++.+ +..+.+
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTA---lP----gLG~~I~hVdvtadG-Kwil~Tc-~tyLlL  496 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTA---LP----GLGDAIKHVDVTADG-KWILATC-KTYLLL  496 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhc---cc----ccCCceeeEEeeccC-cEEEEec-ccEEEE
Confidence              22345566655555 899999999999999743322111   22    235899999999998 5555544 445555


Q ss_pred             EE
Q 006424          446 LD  447 (645)
Q Consensus       446 wd  447 (645)
                      .+
T Consensus       497 i~  498 (644)
T KOG2395|consen  497 ID  498 (644)
T ss_pred             EE
Confidence            54

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.98  E-value=0.46  Score=51.21  Aligned_cols=192  Identities=11%  Similarity=0.076  Sum_probs=108.7

Q ss_pred             CeEEEEeCCCcEEEEecCCCeEEEEecCCCc------EE-EEEEeeCCCCEEEEEe---------CCCcEEEEeCCCCcE
Q 006424          299 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY------VT-CVQFNPIDDNYFISGS---------IDGKVRIWGVCEKRV  362 (645)
Q Consensus       299 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------v~-~l~~~p~~~~~l~s~s---------~dg~i~vwd~~~~~~  362 (645)
                      +.++.++.++.|..+|.++|+.+-.+.....      +. ...+.   +..++.++         .++.+..+|..+++.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence            6888889999999999999999887763332      11 12222   24455554         367899999999886


Q ss_pred             EEeeccC-C--------------------Ce-EEEEEccCCCEEEEEecCC------------------eEEEEEecCCc
Q 006424          363 VDWADVR-D--------------------VI-SAICYIPDGKGFIVGSITG------------------TCHFYKASGND  402 (645)
Q Consensus       363 ~~~~~~~-~--------------------~v-~~l~~sp~g~~l~~g~~dg------------------~i~iwd~~~~~  402 (645)
                      +-..... .                    .+ .+..+.+.+..+++++.++                  .+.-+|..+++
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            6432221 0                    01 1244555567788887665                  68888888887


Q ss_pred             eeeeEEeecccc----ccCCCCe-EEEEEcCCC--CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCE
Q 006424          403 LKLEKVDFHDRK----KTSGNKI-TGIQFSRDE--SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKH  475 (645)
Q Consensus       403 ~~~~~~~~~~~~----~~~~~~i-~~i~~s~~g--~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~  475 (645)
                      ..-.. ....+.    .....++ ..+. .-+|  ...+++++.+|.+...|..+..........   ...++.+|  ..
T Consensus       268 ~~W~~-~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~  340 (488)
T cd00216         268 VKWFY-QTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GL  340 (488)
T ss_pred             EEEEe-eCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ce
Confidence            65431 111100    0000111 1111 0122  136788889999999998765554443211   11223333  22


Q ss_pred             EEEE------------------eCCccEEEEeCCCCCcCCCcc
Q 006424          476 IISI------------------GDDCRVYVWNYDELCFPSSKQ  500 (645)
Q Consensus       476 l~t~------------------s~dg~I~iwd~~~~~~~~~~~  500 (645)
                      ++.+                  ..+|.+.-.|..+++..+...
T Consensus       341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~  383 (488)
T cd00216         341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR  383 (488)
T ss_pred             EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence            3222                  235778888888777555443

The alignment model contains an 8-bladed beta-propeller.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.015  Score=59.51  Aligned_cols=148  Identities=16%  Similarity=0.169  Sum_probs=98.5

Q ss_pred             CCCE-EEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC-------EEEEEecCCeEEEEEecCCceeeeEEee
Q 006424          339 DDNY-FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-------GFIVGSITGTCHFYKASGNDLKLEKVDF  410 (645)
Q Consensus       339 ~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~-------~l~~g~~dg~i~iwd~~~~~~~~~~~~~  410 (645)
                      +.++ +.++.....++-.|+..|+++.--.....|+-+.+.|+.+       .-++|-.+..|.-||.+-.......+ .
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~-~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV-V  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee-e
Confidence            3444 3445555678888999999887555555588888888653       23557788899999998544311111 1


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      +.+.........|++-..+|  ++++|+.+|.|++||--.....-....-..+|..+..+.+|++|+..+ +..+.+-++
T Consensus       423 q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eccccccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            22222224566777777776  899999999999999532222222333677999999999999988766 455555554

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.0037  Score=65.04  Aligned_cols=92  Identities=18%  Similarity=0.202  Sum_probs=76.0

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424          200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  279 (645)
Q Consensus       200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (645)
                      .-.|.-+.|+|.-.++|.+..+|.|.+..+.-                                              +.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~----------------------------------------------qR   53 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW----------------------------------------------QR   53 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEecc----------------------------------------------ce
Confidence            34588999999999999999999999988752                                              33


Q ss_pred             ceeeccCccCeE-EEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE--ecCCCcEEEEEEee
Q 006424          280 LQELHGHKGDVL-DLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV--FDHHNYVTCVQFNP  337 (645)
Q Consensus       280 ~~~l~~h~~~V~-~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~--~~~~~~v~~l~~~p  337 (645)
                      +.++.-|...++ +++|.||| .|+.|-.||+|++.|++++..+..  +.....|.++.|.+
T Consensus        54 lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   54 LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            455555666666 99999998 888999999999999999988887  45677888888864

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.91  E-value=0.15  Score=55.65  Aligned_cols=185  Identities=11%  Similarity=0.080  Sum_probs=98.7

Q ss_pred             cCeEEEEEcCCC-eEEEEe------CCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---------
Q 006424          288 GDVLDLAWSNSN-YLLSCS------MDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---------  349 (645)
Q Consensus       288 ~~V~~l~~s~~~-~l~s~s------~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d---------  349 (645)
                      ..+...+.+|++ .++...      .|.  .+.+++.. +.. ..+-.....+.-.|+| ++..+++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEecc
Confidence            467788899987 444332      243  45555542 222 2222223477889999 87766665432         


Q ss_pred             ---CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEE---EEecCCceeee-EEeeccccccCCCCeE
Q 006424          350 ---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF---YKASGNDLKLE-KVDFHDRKKTSGNKIT  422 (645)
Q Consensus       350 ---g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~i---wd~~~~~~~~~-~~~~~~~~~~~~~~i~  422 (645)
                         +.+.+.++..+....  .....|..+.|+|||..++... +|.|++   -....+..... ...+.   ......+.
T Consensus       427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~---~~l~~~~~  500 (591)
T PRK13616        427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG---PGLGDTAV  500 (591)
T ss_pred             CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee---cccCCccc
Confidence               233333444443332  3456799999999999888866 477766   33223321111 00111   11123468


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEE--CCcceeeE-eecCCCCCeEEEEEecCCCEEEEEeCCccE
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILD--GVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRV  485 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd--~~~~~~~~-~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I  485 (645)
                      ++.|.+++ . |+++..++...+|.  +....... ........+..++-+++  .++....+|.+
T Consensus       501 ~l~W~~~~-~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~  562 (591)
T PRK13616        501 SLDWRTGD-S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL  562 (591)
T ss_pred             cceEecCC-E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence            89999997 4 44555555555554  33222111 22222456666666653  34444555533

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.68  E-value=0.2  Score=52.62  Aligned_cols=134  Identities=11%  Similarity=0.173  Sum_probs=72.3

Q ss_pred             CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC------------cEEEee
Q 006424          299 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK------------RVVDWA  366 (645)
Q Consensus       299 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~------------~~~~~~  366 (645)
                      |.++....++.|.+||+.+++.+..+.... |..+.|++ ++++++..+. ..+.+++....            ......
T Consensus       117 G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~  193 (443)
T PF04053_consen  117 GNLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIH  193 (443)
T ss_dssp             SSSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE
T ss_pred             CcEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEE
Confidence            634444444589999999999999998765 99999999 8899888875 57888876655            444455


Q ss_pred             ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424          367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  446 (645)
Q Consensus       367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw  446 (645)
                      .....|.+.+|..+  .++-.+.. .++.  +-++....  +..-      ..++.=+.+.+.. ..+.....|+.|..+
T Consensus       194 E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~--i~~l------d~~~yllgy~~~~-~~ly~~Dr~~~v~~~  259 (443)
T PF04053_consen  194 EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGI--IAHL------DKPLYLLGYLPKE-NRLYLIDRDGNVISY  259 (443)
T ss_dssp             EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEE--EEE-------SS--EEEEEETTT-TEEEEE-TT--EEEE
T ss_pred             EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcce--EEEc------CCceEEEEEEccC-CEEEEEECCCCEEEE
Confidence            55778888888765  44444433 5554  33332211  1111      1345555566643 567777777777766


Q ss_pred             ECC
Q 006424          447 DGV  449 (645)
Q Consensus       447 d~~  449 (645)
                      .+.
T Consensus       260 ~ld  262 (443)
T PF04053_consen  260 ELD  262 (443)
T ss_dssp             E--
T ss_pred             EEC
Confidence            543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00320 WD40 WD40 repeats

Probab=96.65  E-value=0.0039  Score=39.54  Aligned_cols=36  Identities=42%  Similarity=0.752  Sum_probs=31.1

Q ss_pred             CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQ  314 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd  314 (645)
                      +...+..|...|.++.|++++ .+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355667899999999999875 899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.60  E-value=0.2  Score=54.77  Aligned_cols=191  Identities=17%  Similarity=0.160  Sum_probs=102.6

Q ss_pred             EEEEEcCCCeEEEEeCC------CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCc-----EEEEeC
Q 006424          291 LDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGK-----VRIWGV  357 (645)
Q Consensus       291 ~~l~~s~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~-----i~vwd~  357 (645)
                      .+++...+...++||.|      .++..||..+++-...-.  ....-.+++..  ++.+.++|+.||.     +..||.
T Consensus       326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp  403 (571)
T KOG4441|consen  326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDP  403 (571)
T ss_pred             ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecC
Confidence            34454444477888888      357788888776443222  11111122222  7889999999864     888888


Q ss_pred             CCCcEEEeeccCCCeEEEEE-ccCCCEEEEEecCC------eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          358 CEKRVVDWADVRDVISAICY-IPDGKGFIVGSITG------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       358 ~~~~~~~~~~~~~~v~~l~~-sp~g~~l~~g~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      .+.+-............... .-+|...++|+.++      .+..||..++......- +....    .. ..++...+ 
T Consensus       404 ~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~-M~~~R----~~-~g~a~~~~-  476 (571)
T KOG4441|consen  404 VTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP-MNTRR----SG-FGVAVLNG-  476 (571)
T ss_pred             CCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCC-ccccc----cc-ceEEEECC-
Confidence            87765544333222222222 23677777887554      56788888776643211 11111    11 12333333 


Q ss_pred             CcEEEEEECCC-----eEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCCc-----cEEEEeCCCC
Q 006424          431 SQRIMITSEDS-----KLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL  493 (645)
Q Consensus       431 ~~~l~~~s~dg-----~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~dg-----~I~iwd~~~~  493 (645)
                       .+++.|+.|+     +|..||.....-....  ......+..+.  -+++..++|+.||     +|-.||..+.
T Consensus       477 -~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  477 -KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             -EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence             6888888776     3667776532222211  11111221122  2567778888775     4666655544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.45  E-value=0.71  Score=44.38  Aligned_cols=165  Identities=9%  Similarity=0.150  Sum_probs=109.3

Q ss_pred             ccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424          284 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  360 (645)
Q Consensus       284 ~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~  360 (645)
                      .|-...|.++.|+|+. .|++......-.||=-.+|+.+.++.  .-.....+.+.. ++++.++--.++.+.++.+...
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence            3445569999999986 78888887888888777899988875  223455677776 6666666666888888877554


Q ss_pred             cE-E-------Ee--ecc-CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE-E-eecc-ccccCCCCeEEEEE
Q 006424          361 RV-V-------DW--ADV-RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-V-DFHD-RKKTSGNKITGIQF  426 (645)
Q Consensus       361 ~~-~-------~~--~~~-~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~-~~~~-~~~~~~~~i~~i~~  426 (645)
                      .. .       .+  ..+ +...-.++|+|....|.++-+..-+.+|........... . ..+. ...-.-..+.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            21 1       11  112 556788999999999998888887888777643321110 0 0000 00001235678889


Q ss_pred             cCCCCcEEEEEECCCeEEEEECC
Q 006424          427 SRDESQRIMITSEDSKLRILDGV  449 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~  449 (645)
                      .+....+++.+.+++.+.-.|..
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecC
Confidence            87655778888888888888865

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.44  E-value=0.005  Score=56.32  Aligned_cols=140  Identities=14%  Similarity=0.089  Sum_probs=75.5

Q ss_pred             EEEEeCCCcEEEEeCCCCcEEE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          343 FISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       343 l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      +...+.||.|+-++++..+...  ..-+...   ...-.-+..+++|+.+|.|.+|...............      ...
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~------~e~  103 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG------EES  103 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcc------ccc
Confidence            3444567888887776533221  1111111   1111245679999999999999887332211111111      123


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECCcceee-EeecCCC-CCeEEEEEecCCCEEEEE--eCCccEEEEeCCC
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKGLPKS-GSQMSASFTTTGKHIISI--GDDCRVYVWNYDE  492 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~-~~~~~~~-~~i~~v~~sp~~~~l~t~--s~dg~I~iwd~~~  492 (645)
                      |.++.-.-+...+..+++.||.|+.|+....... +.++ |. .++.....+..+++++.+  |.|..++.|++..
T Consensus       104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~-h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ-HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeccccccccceeEEeccCCceeeeccccCceeeeecc-ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            3333222222258899999999999997633222 2222 33 444444445555566665  6666666666654

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.34  E-value=1.6  Score=45.29  Aligned_cols=182  Identities=10%  Similarity=0.124  Sum_probs=96.4

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC--------------------
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--------------------  359 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~--------------------  359 (645)
                      .++.-+.||.+.+++-+.......+..---...+.+.+ ..+.|++++.+..+..|....                    
T Consensus       147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~  225 (418)
T PF14727_consen  147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISS  225 (418)
T ss_pred             EEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhccccccccccccccccc
Confidence            78888999999999987655444444323334567888 778899998888999986521                    


Q ss_pred             CcEEE---eeccCCCeEEEEEcc---CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE------c
Q 006424          360 KRVVD---WADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF------S  427 (645)
Q Consensus       360 ~~~~~---~~~~~~~v~~l~~sp---~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~------s  427 (645)
                      ++...   .......+..+..-.   ....+++-+ ..++...+..+ .. .....+..      .+.....|      .
T Consensus       226 ~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~G-~l-~~~krLd~------~p~~~~~Y~~~~~~~  296 (418)
T PF14727_consen  226 GKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDNG-SL-RFQKRLDY------NPSCFCPYRVPWYNE  296 (418)
T ss_pred             cccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCCC-eE-EEEEecCC------ceeeEEEEEeecccC
Confidence            01000   122233344443322   222233222 23444444432 11 11111111      11111111      2


Q ss_pred             CCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCe--EEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          428 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQ--MSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       428 ~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i--~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ++....+++++.++.+.||.-.+..-....  ...+|  .-..|..-...|++-+.+|.+.+-=+.+.
T Consensus       297 ~~~~~~llV~t~t~~LlVy~d~~L~WsA~l--~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd  362 (418)
T PF14727_consen  297 PSTRLNLLVGTHTGTLLVYEDTTLVWSAQL--PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD  362 (418)
T ss_pred             CCCceEEEEEecCCeEEEEeCCeEEEecCC--CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence            222235899999999999985543333222  22222  22223333567788888888887665543

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.29  E-value=0.4  Score=52.51  Aligned_cols=105  Identities=10%  Similarity=0.061  Sum_probs=62.3

Q ss_pred             eEEEEEcCCC-eEEEEeCC------------CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEE--
Q 006424          290 VLDLAWSNSN-YLLSCSMD------------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI--  354 (645)
Q Consensus       290 V~~l~~s~~~-~l~s~s~d------------g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v--  354 (645)
                      .+.-.|+|+| .+++.+..            +.+.+.+++.+....  .....|..+.|+| ||..++... ++.|++  
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~  474 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV  474 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence            6667888884 55555322            233333444433322  3356799999999 999887766 577777  


Q ss_pred             -EeCCCCcEE-----Ee-eccCCCeEEEEEccCCCEEEEEecCCeEEEEEec
Q 006424          355 -WGVCEKRVV-----DW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  399 (645)
Q Consensus       355 -wd~~~~~~~-----~~-~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~  399 (645)
                       -....+...     .+ ......+.++.|..++.+ +++..++.-.+|.+.
T Consensus       475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~  525 (591)
T PRK13616        475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN  525 (591)
T ss_pred             EEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence             443444411     12 223344688999998885 466655555555543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.26  E-value=1.2  Score=42.92  Aligned_cols=160  Identities=12%  Similarity=0.172  Sum_probs=97.5

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      +.|-...|.++.|+|+.+.|++......-.||=...|+.                                         
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-----------------------------------------  119 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-----------------------------------------  119 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCce-----------------------------------------
Confidence            455666699999999999888887776666664443322                                         


Q ss_pred             cCCCceeec--cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEE----------EecC-CCcEEEEEEeeCCCC
Q 006424          276 EESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN----------VFDH-HNYVTCVQFNPIDDN  341 (645)
Q Consensus       276 ~~~~~~~l~--~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~----------~~~~-~~~v~~l~~~p~~~~  341 (645)
                          ++++.  + -..--.+.|..+| +.++--.++.+.++.+.....+.          ...+ +.....++|.| .++
T Consensus       120 ----irtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~  193 (316)
T COG3204         120 ----IRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDH  193 (316)
T ss_pred             ----EEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCc
Confidence                22221  1 1122234555455 44555566777777665442211          1123 55788999999 777


Q ss_pred             EEEEEeCCCcEEEEeCCCCc-EEE---eecc-------CCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCc
Q 006424          342 YFISGSIDGKVRIWGVCEKR-VVD---WADV-------RDVISAICYIP-DGKGFIVGSITGTCHFYKASGND  402 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~~~~~-~~~---~~~~-------~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~  402 (645)
                      .|+.+-+..-+.||.+.... ...   ...+       -..+.++.|++ .+.+++.+.+++.+.-.|.....
T Consensus       194 ~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~  266 (316)
T COG3204         194 RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV  266 (316)
T ss_pred             eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence            77777777778888765432 111   1111       13467788887 45567777778888888877654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.16  E-value=1.9  Score=44.25  Aligned_cols=183  Identities=15%  Similarity=0.193  Sum_probs=84.4

Q ss_pred             CCC-eEEEE--eC----CCcEEEEecCCCeEEEEecC----CCcEEEEEEeeCCCCEEEEEeC-----------------
Q 006424          297 NSN-YLLSC--SM----DKTVRMWQVGCNQCLNVFDH----HNYVTCVQFNPIDDNYFISGSI-----------------  348 (645)
Q Consensus       297 ~~~-~l~s~--s~----dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~~p~~~~~l~s~s~-----------------  348 (645)
                      |+| .++|+  ..    -|-+.+.|-++.+.......    ...-+.+-|.| ..+.++|...                 
T Consensus       139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~  217 (461)
T PF05694_consen  139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEA  217 (461)
T ss_dssp             SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHH
T ss_pred             CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhc
Confidence            566 55554  22    24677888777777666542    23456777888 7788887653                 


Q ss_pred             ---CCcEEEEeCCCCcEEEeeccC---CCeEEEEEcc--CCCEEEEEe-cCCeEEE-EEecCCceeeeE-Eeecccc---
Q 006424          349 ---DGKVRIWGVCEKRVVDWADVR---DVISAICYIP--DGKGFIVGS-ITGTCHF-YKASGNDLKLEK-VDFHDRK---  414 (645)
Q Consensus       349 ---dg~i~vwd~~~~~~~~~~~~~---~~v~~l~~sp--~g~~l~~g~-~dg~i~i-wd~~~~~~~~~~-~~~~~~~---  414 (645)
                         ..++.+||+.+.+.++.....   ..+..+.|..  +..+=++|+ -.++|.. |....+....+. +.+....   
T Consensus       218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence               357999999999988866554   3455677754  444433333 3344444 333445444332 2222110   


Q ss_pred             ----------ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce---eeEee----------------cCCCCCeE
Q 006424          415 ----------KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI---HKFKG----------------LPKSGSQM  465 (645)
Q Consensus       415 ----------~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~---~~~~~----------------~~~~~~i~  465 (645)
                                .....-|+.|..|.|.+.+.+++=.+|.|+.||+..+.   ..-+.                ..-.+...
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq  377 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ  377 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred             ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence                      00124579999999984444455568999999987422   11111                01122345


Q ss_pred             EEEEecCCCEEEEEe
Q 006424          466 SASFTTTGKHIISIG  480 (645)
Q Consensus       466 ~v~~sp~~~~l~t~s  480 (645)
                      -+..|-||+.|...+
T Consensus       378 MvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  378 MVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -EEE-TTSSEEEEE-
T ss_pred             eEEEccCCeEEEEEe
Confidence            677888998887654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.14  E-value=2.2  Score=44.92  Aligned_cols=192  Identities=14%  Similarity=0.152  Sum_probs=101.1

Q ss_pred             eEEEEEcCCC-eEE-EEeCCC----cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC-----------cE
Q 006424          290 VLDLAWSNSN-YLL-SCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG-----------KV  352 (645)
Q Consensus       290 V~~l~~s~~~-~l~-s~s~dg----~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg-----------~i  352 (645)
                      +....++|++ +++ +.+..|    .+++.|+++|+.+...-.......+.|.+ +++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeC-CCCEEEEEEeCcccccccCCCCcEE
Confidence            4457788987 444 445544    49999999998765431111223399999 777766655433           37


Q ss_pred             EEEeCCCCc---EEEeeccC-CC-eEEEEEccCCCEEEEEecC----CeEEEEEecCC---ceeeeEEeeccccccCCCC
Q 006424          353 RIWGVCEKR---VVDWADVR-DV-ISAICYIPDGKGFIVGSIT----GTCHFYKASGN---DLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       353 ~vwd~~~~~---~~~~~~~~-~~-v~~l~~sp~g~~l~~g~~d----g~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~  420 (645)
                      +.|.+.+..   .+-+.... .. ...+..+++++++++....    ..+.+.++...   ......+....     .+.
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-----~~~  279 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-----DGV  279 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-----SS-
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-----Cce
Confidence            888887643   12222222 22 5688899999998875443    34667777654   22222222221     122


Q ss_pred             eEEEEEcCCCCcEEEEEEC---CCeEEEEECCccee---eEeecCCCC--CeEEEEEecCCCEEEEE-eCC--ccEEEEe
Q 006424          421 ITGIQFSRDESQRIMITSE---DSKLRILDGVDVIH---KFKGLPKSG--SQMSASFTTTGKHIISI-GDD--CRVYVWN  489 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~---dg~I~iwd~~~~~~---~~~~~~~~~--~i~~v~~sp~~~~l~t~-s~d--g~I~iwd  489 (645)
                      ...+... .+ .+++....   .+.|.-.++.....   ......+..  .+..+.  ..+.+|+.. ..+  ..|++++
T Consensus       280 ~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~~  355 (414)
T PF02897_consen  280 EYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLRVYD  355 (414)
T ss_dssp             EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEEEEE
Confidence            2333333 32 44444433   35677777664431   112222333  344444  445555544 344  3688888


Q ss_pred             CC
Q 006424          490 YD  491 (645)
Q Consensus       490 ~~  491 (645)
                      +.
T Consensus       356 ~~  357 (414)
T PF02897_consen  356 LD  357 (414)
T ss_dssp             TT
T ss_pred             CC
Confidence            88

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.13  E-value=0.046  Score=61.02  Aligned_cols=155  Identities=10%  Similarity=0.002  Sum_probs=95.7

Q ss_pred             CCeEEEEEccCCCEEEEEec--CCeEEEEEecCCceeee----EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeE
Q 006424          370 DVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL  443 (645)
Q Consensus       370 ~~v~~l~~sp~g~~l~~g~~--dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I  443 (645)
                      ..+..+...+|+...++...  +-.|..||++.-.....    .+..+...........++.|.|.-....++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            34556666778776555443  33788999875433221    1111111111234567888999765677888899999


Q ss_pred             EEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCC
Q 006424          444 RILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG  523 (645)
Q Consensus       444 ~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~  523 (645)
                      ++..+................++++|+|.|+.++.|-..|++.-|...-. .....+..      -+...+.++.+.|-.
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~P------p~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEP------PVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCC------CcCCCcceeEEEEec
Confidence            99886644333333335567899999999999999999999998865422 11111111      122245677777776


Q ss_pred             CCcccccc
Q 006424          524 IGTEQKSL  531 (645)
Q Consensus       524 ~~~~l~~~  531 (645)
                      ...+++..
T Consensus       254 t~eflvvy  261 (1405)
T KOG3630|consen  254 TQEFLVVY  261 (1405)
T ss_pred             ceeEEEEe
Confidence            66666543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.87  E-value=2  Score=42.23  Aligned_cols=138  Identities=13%  Similarity=0.148  Sum_probs=84.7

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-------------
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-------------  364 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-------------  364 (645)
                      +..|+.|+.+| +.++++..............|..+...| +-+.+++-+ |+.++++++..-....             
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            34888998888 9999984333333333444499999998 666666665 5999999987533222             


Q ss_pred             --eeccCCCeEEEE--EccCCCEEEEEecCCeEEEEEecCCce----eeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          365 --WADVRDVISAIC--YIPDGKGFIVGSITGTCHFYKASGNDL----KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       365 --~~~~~~~v~~l~--~sp~g~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                        .......+..++  -...+...++......|.+|.......    ....+.+.       ..+.+++|.++   .++.
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~~~---~i~v  153 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFLGN---KICV  153 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEeCC---EEEE
Confidence              112223344444  122344444445555999998876422    22333333       67889999944   5666


Q ss_pred             EECCCeEEEEECC
Q 006424          437 TSEDSKLRILDGV  449 (645)
Q Consensus       437 ~s~dg~I~iwd~~  449 (645)
                      |..+ ...+.|+.
T Consensus       154 ~~~~-~f~~idl~  165 (275)
T PF00780_consen  154 GTSK-GFYLIDLN  165 (275)
T ss_pred             EeCC-ceEEEecC
Confidence            6644 47777766

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.81  E-value=2.3  Score=42.41  Aligned_cols=186  Identities=13%  Similarity=0.070  Sum_probs=105.5

Q ss_pred             EEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE-EEeec---
Q 006424          294 AWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWAD---  367 (645)
Q Consensus       294 ~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~---  367 (645)
                      .|.++.  .+.+--..+.|.-|+..+++. ..+...+.+.++.... .+..|+++.  ..+.+++...+.. ..+..   
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence            345543  455556677888888876543 3444445555555444 444555543  3467777765554 22211   


Q ss_pred             --cCCCeEEEEEccCCCEEEEEec-----------CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424          368 --VRDVISAICYIPDGKGFIVGSI-----------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  434 (645)
Q Consensus       368 --~~~~v~~l~~sp~g~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l  434 (645)
                        .....+.....|+|.+.+....           -|.++.+|.. ... ....  ..    +-..-+.++||||+..++
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~-~~l~--~~----~~~~~NGla~SpDg~tly  178 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGV-VRLL--DD----DLTIPNGLAFSPDGKTLY  178 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCE-EEee--cC----cEEecCceEECCCCCEEE
Confidence              1245667888899876655333           1334444432 221 1111  11    013346899999985555


Q ss_pred             EEEECCCeEEEEECCc-------ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCc-cEEEEeCC
Q 006424          435 MITSEDSKLRILDGVD-------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC-RVYVWNYD  491 (645)
Q Consensus       435 ~~~s~dg~I~iwd~~~-------~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg-~I~iwd~~  491 (645)
                      ++=+..+.|.-|+...       ....+......+..-.++...+|.+-+++-.+| .|.+|+.+
T Consensus       179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            5556668888887541       111122222456667788888888886555554 99999988

>PHA02713 hypothetical protein; Provisional

Probab=95.80  E-value=0.49  Score=51.82  Aligned_cols=184  Identities=9%  Similarity=0.077  Sum_probs=93.6

Q ss_pred             CeEEEEeCC------CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEeCCCCcEEEe
Q 006424          299 NYLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRVVDW  365 (645)
Q Consensus       299 ~~l~s~s~d------g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~  365 (645)
                      ..++.||.+      ..+..||..++.-...-.  ....-.+++..  ++.+.+.||.++     .+..||..+.+-...
T Consensus       305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            356666653      347788887765432211  11111122222  678888888764     488899887765543


Q ss_pred             eccCCCeEEE-EEccCCCEEEEEecCC-----------------------eEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424          366 ADVRDVISAI-CYIPDGKGFIVGSITG-----------------------TCHFYKASGNDLKLEKVDFHDRKKTSGNKI  421 (645)
Q Consensus       366 ~~~~~~v~~l-~~sp~g~~l~~g~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  421 (645)
                      .....+.... ...-+|+..++|+.++                       .+..||..+....... .+...    ... 
T Consensus       383 ~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~~----r~~-  456 (557)
T PHA02713        383 PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWTG----TIR-  456 (557)
T ss_pred             CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC-CCCcc----ccc-
Confidence            3322221111 1123677777776542                       4677887766553211 11110    011 


Q ss_pred             EEEEEcCCCCcEEEEEECC------CeEEEEECCc-ceee-Ee-ecCCCCCeEEEEEecCCCEEEEEeCCc--cEEEEeC
Q 006424          422 TGIQFSRDESQRIMITSED------SKLRILDGVD-VIHK-FK-GLPKSGSQMSASFTTTGKHIISIGDDC--RVYVWNY  490 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~d------g~I~iwd~~~-~~~~-~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg--~I~iwd~  490 (645)
                      .+++.. +| .+.+.|+.+      ..+..||..+ ..-. .. ..........+.  -+|+..++||.||  .+-.||.
T Consensus       457 ~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~  532 (557)
T PHA02713        457 PGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNV  532 (557)
T ss_pred             CcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcCc
Confidence            122222 33 566777654      2467788664 2211 11 111112222222  2788889999888  6777777


Q ss_pred             CCCC
Q 006424          491 DELC  494 (645)
Q Consensus       491 ~~~~  494 (645)
                      .+.+
T Consensus       533 ~~~~  536 (557)
T PHA02713        533 YTYE  536 (557)
T ss_pred             cccc
Confidence            6653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.66  E-value=1.1  Score=47.24  Aligned_cols=151  Identities=13%  Similarity=0.244  Sum_probs=92.2

Q ss_pred             ccCeEEEEEcCCC-eEEEEe--CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeC---CCCEEEEEeCCCcEEEEeCCC-
Q 006424          287 KGDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGSIDGKVRIWGVCE-  359 (645)
Q Consensus       287 ~~~V~~l~~s~~~-~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~---~~~~l~s~s~dg~i~vwd~~~-  359 (645)
                      -.+|..++|.... .+++.-  .+|.+++=|   ...+..|   ..|..+.|.|.   +.-.+++......|.||.+.- 
T Consensus        19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            3578899998654 344432  233333222   2334444   34889999983   122344445568899998852 


Q ss_pred             ----CcEEE--eecc----CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          360 ----KRVVD--WADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       360 ----~~~~~--~~~~----~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                          ++...  .-..    .--...+.|+|....|++-+....-.+++++......+ .....     .+.|.|.+|.+|
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVk-aDi~~-----~G~IhCACWT~D  166 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVK-ADIKT-----SGLIHCACWTKD  166 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEE-EeccC-----CceEEEEEecCc
Confidence                22211  1111    11234577999999888877776667777775554433 22232     378999999999


Q ss_pred             CCcEEEEEECCCeEEEEECC
Q 006424          430 ESQRIMITSEDSKLRILDGV  449 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~  449 (645)
                      |.+++++.+..=.-++||-.
T Consensus       167 G~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  167 GQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CCEEEEEeCCeEEEEEecCc
Confidence            97666666777778999944

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.62  E-value=0.98  Score=43.13  Aligned_cols=184  Identities=13%  Similarity=0.191  Sum_probs=102.4

Q ss_pred             EECCCCCEEEEEeCC-----CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          207 KFSPDGRYLASGGED-----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       207 ~fspdg~~L~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      .|||||.+|...-.|     |.|-|||...+                                            .+.+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--------------------------------------------fqrvg  155 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--------------------------------------------FQRVG  155 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccc--------------------------------------------cceec
Confidence            589999988876443     77889988752                                            23455


Q ss_pred             eeccCccCeEEEEEcCCCeEEEEeCCC-------------------cEEEEecCCCeEEEEec-----CCCcEEEEEEee
Q 006424          282 ELHGHKGDVLDLAWSNSNYLLSCSMDK-------------------TVRMWQVGCNQCLNVFD-----HHNYVTCVQFNP  337 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~~~l~s~s~dg-------------------~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p  337 (645)
                      .+..|.-.-..+.|.+||.++.....|                   ++.+.|..+|..+....     +.-.|..++..+
T Consensus       156 E~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~  235 (366)
T COG3490         156 EFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR  235 (366)
T ss_pred             ccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC
Confidence            666676666778888888433332211                   23333434444443321     334577777776


Q ss_pred             CCCCEEEEEeCCCc-----EEEEeCCCCcEEEeec--------cCCCeEEEEEccCCCEEEEEecC-CeEEEEEecCCce
Q 006424          338 IDDNYFISGSIDGK-----VRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDL  403 (645)
Q Consensus       338 ~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~~g~~d-g~i~iwd~~~~~~  403 (645)
                       ++..++-+-..|.     -.+=....++.+++..        ....|-+++.+.+..+++..+-. +...+||..++..
T Consensus       236 -dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v  314 (366)
T COG3490         236 -DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV  314 (366)
T ss_pred             -CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence             6655554433221     1111112233222221        23457778887766666655554 4667899998876


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424          404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  447 (645)
Q Consensus       404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd  447 (645)
                      .... .+        .....+.-...   -+++.+.+|.+.++.
T Consensus       315 v~~a-~l--------~daaGva~~~~---gf~vssg~G~~~~~s  346 (366)
T COG3490         315 VSEA-AL--------PDAAGVAAAKG---GFAVSSGQGRIIFYS  346 (366)
T ss_pred             Eecc-cc--------cccccceeccC---ceEEecCCceEEecc
Confidence            4321 11        11223333333   377777888888775

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.60  E-value=1.2  Score=44.33  Aligned_cols=194  Identities=12%  Similarity=0.104  Sum_probs=104.4

Q ss_pred             EEEECCCCCEEEEE--eCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc--
Q 006424          205 TLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL--  280 (645)
Q Consensus       205 ~l~fspdg~~L~sg--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  280 (645)
                      .+++|.||++++..  +---+|.|-|+...+.......+.+..............+..++...+.....     ++..  
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~-----Gk~~~~  173 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDAD-----GKEAQK  173 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETST-----SSEEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCC-----CCEeEe
Confidence            35788888877664  33456888888877665555555444333333222222222222222222110     1111  


Q ss_pred             --eeeccCccCeE-EEEEcC-CCeEEEEeCCCcEEEEecCCCeEE--EEec-----------CCCcEEEEEEeeCCCCEE
Q 006424          281 --QELHGHKGDVL-DLAWSN-SNYLLSCSMDKTVRMWQVGCNQCL--NVFD-----------HHNYVTCVQFNPIDDNYF  343 (645)
Q Consensus       281 --~~l~~h~~~V~-~l~~s~-~~~l~s~s~dg~I~iwd~~~~~~~--~~~~-----------~~~~v~~l~~~p~~~~~l  343 (645)
                        ..+..-..++. .-++.. ++.++--+.+|.|+--|+......  ....           -.+.-.-+++++ ..+.|
T Consensus       174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~-~~~rl  252 (342)
T PF06433_consen  174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA-ASGRL  252 (342)
T ss_dssp             EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET-TTTEE
T ss_pred             eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc-ccCeE
Confidence              11111122221 223333 346666888899888888655422  1111           112234467777 44444


Q ss_pred             EEEeC---C-------CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC-EEEEE-ecCCeEEEEEecCCcee
Q 006424          344 ISGSI---D-------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVG-SITGTCHFYKASGNDLK  404 (645)
Q Consensus       344 ~s~s~---d-------g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~g-~~dg~i~iwd~~~~~~~  404 (645)
                      ++.-.   +       ..|-++|+.+++.+........+.+|..+.+.+ +|++. ..++.+.+||..+++..
T Consensus       253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence            43221   1       148888999999988777777888999999877 55444 45789999999988654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.59  E-value=0.058  Score=36.59  Aligned_cols=32  Identities=19%  Similarity=0.134  Sum_probs=29.0

Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          460 KSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       460 ~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      ....|..++|+|...+||.++.+|.|.+++++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            34578999999999999999999999999994

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.50  E-value=0.048  Score=36.99  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=28.4

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 006424          200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT  230 (645)
Q Consensus       200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~  230 (645)
                      ...|.+++|+|...+||.|+.||.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3469999999999999999999999999984

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.46  E-value=3.4  Score=41.98  Aligned_cols=173  Identities=15%  Similarity=0.144  Sum_probs=82.8

Q ss_pred             CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC---CC-cEEEE--eCCCCcEEEeecc--CCCeEEEEEcc
Q 006424          308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI---DG-KVRIW--GVCEKRVVDWADV--RDVISAICYIP  379 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~---dg-~i~vw--d~~~~~~~~~~~~--~~~v~~l~~sp  379 (645)
                      ..|.--|+.+|+....+.....+..+.|+|.++.+|+.|-+   +. .-+||  +..+.....+..+  ...+..=-|.|
T Consensus       168 ~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~  247 (386)
T PF14583_consen  168 CRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP  247 (386)
T ss_dssp             EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred             ceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence            34666688888888888888899999999988888888764   22 12556  4444444443333  22334445889


Q ss_pred             CCCEEEEEe--c---CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC-------------
Q 006424          380 DGKGFIVGS--I---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS-------------  441 (645)
Q Consensus       380 ~g~~l~~g~--~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg-------------  441 (645)
                      ||..+.--+  .   +..|.-+|+.+.....  + ...      .....+..+++| .+++-=+.|.             
T Consensus       248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~-~~~------p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~~~  317 (386)
T PF14583_consen  248 DGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--L-MEM------PWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYKIE  317 (386)
T ss_dssp             TSS-EEEEEEETTT--EEEEEE-TTT--EEE--E-EEE-------SEEEEEE-TTS-SEEEEEE----------------
T ss_pred             CCCEEEEEeecCCCCceEEEeeCCCCCCceE--E-EeC------CceeeeEEcCCC-CEEEecCCCCCccccccccceec
Confidence            998665422  2   2345556666554321  1 111      234455567787 5554433332             


Q ss_pred             ---eEEEEECCcceee-EeecC-------C--CCCeEEEEEecCCCEEEEEe-CCccEEEEeC
Q 006424          442 ---KLRILDGVDVIHK-FKGLP-------K--SGSQMSASFTTTGKHIISIG-DDCRVYVWNY  490 (645)
Q Consensus       442 ---~I~iwd~~~~~~~-~~~~~-------~--~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~  490 (645)
                         -|++++....... +..+.       +  ...=....|+|||++++-.| ..|...||-+
T Consensus       318 ~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  318 NDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             ---EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             CCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence               4556665532221 11110       0  01124678999999877655 4676666643

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.42  E-value=0.31  Score=54.61  Aligned_cols=98  Identities=16%  Similarity=0.278  Sum_probs=71.5

Q ss_pred             CeEEEEeCCCcEEEEecCCCeE--EEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEE-
Q 006424          299 NYLLSCSMDKTVRMWQVGCNQC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISA-  374 (645)
Q Consensus       299 ~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~-  374 (645)
                      ..++.|+..|.|...|+...-.  ..--....+|++++|+. ++..++.|-.+|.|.+||+..++..+ +..+..+.+. 
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            3688888899999988875422  11123567999999998 99999999999999999999877655 4445544444 


Q ss_pred             --EEEccCCCEEEEEecCCeEEEEEec
Q 006424          375 --ICYIPDGKGFIVGSITGTCHFYKAS  399 (645)
Q Consensus       375 --l~~sp~g~~l~~g~~dg~i~iwd~~  399 (645)
                        +.+..++..++++...|.  +|.+.
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEEEE
Confidence              344456667888888886  66553

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.34  E-value=2.8  Score=40.25  Aligned_cols=187  Identities=14%  Similarity=0.129  Sum_probs=105.4

Q ss_pred             cEEEEEECCCCCEEEEEeCCC--cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424          202 CIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  279 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (645)
                      -...+.|..+|.++-+.+.-|  .|+.+|+.+++......-+...+.                                 
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg---------------------------------   92 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFG---------------------------------   92 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--E---------------------------------
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccc---------------------------------
Confidence            345688877888888888766  688899988654332222111100                                 


Q ss_pred             ceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424          280 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  359 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  359 (645)
                       .-+.-+.+.+..+.|          .++...+||..+-+.+..+.....=+.++.   +++.|+.......++++|..+
T Consensus        93 -EGit~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~  158 (264)
T PF05096_consen   93 -EGITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKRLIMSDGSSRLYFLDPET  158 (264)
T ss_dssp             -EEEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT
T ss_pred             -eeEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEEc---CCCEEEEECCccceEEECCcc
Confidence             001112233444444          457899999999999999987777788874   666777766677899999877


Q ss_pred             CcEEE---eeccC---CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc---------cccCCCCeEEE
Q 006424          360 KRVVD---WADVR---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---------KKTSGNKITGI  424 (645)
Q Consensus       360 ~~~~~---~~~~~---~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~i~~i  424 (645)
                      -+...   .....   ..++.+.|- +|...|=.-....|...|..++..... +.+.+-         ........+.|
T Consensus       159 f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~-iDls~L~~~~~~~~~~~~~~dVLNGI  236 (264)
T PF05096_consen  159 FKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGW-IDLSGLRPEVGRDKSRQPDDDVLNGI  236 (264)
T ss_dssp             -SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEE-EE-HHHHHHHTSTTST--TTS-EEEE
T ss_pred             cceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEE-EEhhHhhhcccccccccccCCeeEeE
Confidence            55433   22222   234556664 555444444555666677766665322 222111         11113568899


Q ss_pred             EEcCCCCcEEEEE
Q 006424          425 QFSRDESQRIMIT  437 (645)
Q Consensus       425 ~~s~~g~~~l~~~  437 (645)
                      ++.|....+++||
T Consensus       237 Ayd~~~~~l~vTG  249 (264)
T PF05096_consen  237 AYDPETDRLFVTG  249 (264)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             eEeCCCCEEEEEe
Confidence            9999875666665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.96  E-value=4.3  Score=40.29  Aligned_cols=230  Identities=13%  Similarity=0.099  Sum_probs=101.9

Q ss_pred             CccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe--cC----CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424          286 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF--DH----HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  359 (645)
Q Consensus       286 h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~--~~----~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  359 (645)
                      -...+.+|.|..++.-...+..+.|.. -.+.|+.-...  ..    .-...++.|..  ...+++| ..+ +.+.-.+.
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~Dg   89 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGAYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTDG   89 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEETTTEEEE-ESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESST
T ss_pred             CCCceEEEEEecCCEEEEEecCCEEEE-ECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecCC
Confidence            355889999986553333344554322 22222221111  11    22466777753  4445554 344 44444444


Q ss_pred             CcEEEee----ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          360 KRVVDWA----DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       360 ~~~~~~~----~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      ++.-...    ..+.....+....++...+ ++..|.|  |.....-..-.......     ...+..+.-+++| .+++
T Consensus        90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW~~~~~~~-----~gs~~~~~r~~dG-~~va  160 (302)
T PF14870_consen   90 GKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTWQAVVSET-----SGSINDITRSSDG-RYVA  160 (302)
T ss_dssp             TSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSEEEEE-S---------EEEEEE-TTS--EEE
T ss_pred             CCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCeeEcccCC-----cceeEeEEECCCC-cEEE
Confidence            4432221    2233444455444443333 3444543  33333322222221111     2678888999998 6777


Q ss_pred             EEECCCeEEEEECCcc-eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCC
Q 006424          436 ITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG  514 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g  514 (645)
                      +++......-||.... -..... .....|..|.|+|++.+.+.+ ..|.|++=+.......+......      ....+
T Consensus       161 vs~~G~~~~s~~~G~~~w~~~~r-~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~------~~~~~  232 (302)
T PF14870_consen  161 VSSRGNFYSSWDPGQTTWQPHNR-NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIP------IKTNG  232 (302)
T ss_dssp             EETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-T------TSS--
T ss_pred             EECcccEEEEecCCCccceEEcc-CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCC------cccCc
Confidence            7766666678885532 333332 256789999999998877755 78888877722221111111100      00122


Q ss_pred             -cEEEEecCCCCccccccCCCCcc
Q 006424          515 -VSVAVQWPGIGTEQKSLCSSSLR  537 (645)
Q Consensus       515 -~~~~v~~s~~~~~l~~~~~~~~~  537 (645)
                       -++.++|.+++...+..+++.+.
T Consensus       233 ~~~ld~a~~~~~~~wa~gg~G~l~  256 (302)
T PF14870_consen  233 YGILDLAYRPPNEIWAVGGSGTLL  256 (302)
T ss_dssp             S-EEEEEESSSS-EEEEESTT-EE
T ss_pred             eeeEEEEecCCCCEEEEeCCccEE
Confidence             25777888776665555554443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.92  E-value=8.6  Score=43.63  Aligned_cols=109  Identities=12%  Similarity=0.121  Sum_probs=72.1

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCCc---------EEEEEEee---------------CCCCEEEEEeCCCcEE
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY---------VTCVQFNP---------------IDDNYFISGSIDGKVR  353 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~---------v~~l~~~p---------------~~~~~l~s~s~dg~i~  353 (645)
                      ++.++.++.++.|.-.|..+|+.+-.+.....         .+.+.+..               ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            56888888899999999999998888753322         22233321               0234788888999999


Q ss_pred             EEeCCCCcEEEeeccCCCeE-------------EEEEcc--CCCEEEEEec----------CCeEEEEEecCCceeee
Q 006424          354 IWGVCEKRVVDWADVRDVIS-------------AICYIP--DGKGFIVGSI----------TGTCHFYKASGNDLKLE  406 (645)
Q Consensus       354 vwd~~~~~~~~~~~~~~~v~-------------~l~~sp--~g~~l~~g~~----------dg~i~iwd~~~~~~~~~  406 (645)
                      -.|.++++.+...+..+.+.             .+.-.|  .+..+++|+.          +|.|+-+|.++++..-.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            99999998876443332221             111122  2345666643          68899999998886543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.90  E-value=0.1  Score=48.00  Aligned_cols=58  Identities=17%  Similarity=0.199  Sum_probs=38.2

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEEec-CC-CcEEEEEEeeCCCCEEEEE--eCCCcEEEEeCC
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNVFD-HH-NYVTCVQFNPIDDNYFISG--SIDGKVRIWGVC  358 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~~~-~~-~~v~~l~~~p~~~~~l~s~--s~dg~i~vwd~~  358 (645)
                      +..+++.||.|+.|++..++.+...+ |+ .++..+..+. .+..++++  |.|..++.|++.
T Consensus       116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence            78899999999999999888877665 44 3344444443 44455555  555556666553

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.79  E-value=0.32  Score=54.72  Aligned_cols=138  Identities=14%  Similarity=0.144  Sum_probs=88.4

Q ss_pred             CeEEEEEcCCC---eEEEEeCCCcEEEEecCCCeE--------EEE----ecCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424          289 DVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQC--------LNV----FDHHNYVTCVQFNPIDDNYFISGSIDGKVR  353 (645)
Q Consensus       289 ~V~~l~~s~~~---~l~s~s~dg~I~iwd~~~~~~--------~~~----~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~  353 (645)
                      ++..+...+|.   .++..+.+-.|..||+++-..        +..    +.......++.|+|.-....+++..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            33444444453   344445556788999864321        111    123345678899985556677788899999


Q ss_pred             EEeCCCCc-EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          354 IWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       354 vwd~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      +..+.... .+.........++++|+|.|+.+++|...|++.-|........  .  .+.........|.+++|-...
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~--~--ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS--E--IPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceee--c--ccCCCcCCCcceeEEEEecce
Confidence            98775432 2333456678999999999999999999999998876533211  1  122111224789999998763

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.62  E-value=0.17  Score=56.46  Aligned_cols=102  Identities=9%  Similarity=0.135  Sum_probs=71.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcE--EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424          339 DDNYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  416 (645)
Q Consensus       339 ~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  416 (645)
                      -+..++.|+..|.+-..|+.+.-.  ..-....++|++++|+.+|..++.|-.+|.|.+||+...+... .+..+++   
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~-~i~e~~a---  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK-VITEHGA---  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee-eeeecCC---
Confidence            445688888889999999877532  3334557899999999999999999999999999998766533 2333322   


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424          417 SGNKITGIQFSRDESQRIMITSEDSKLRILD  447 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd  447 (645)
                      ....+.-+.+..++ ..++++...|.  +|.
T Consensus       174 p~t~vi~v~~t~~n-S~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQN-SKLLTSDTGGS--FWK  201 (1206)
T ss_pred             ccceEEEEEEeCCC-cEEEEccCCCc--eEE
Confidence            12334444455554 46777777776  454

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.48  E-value=1.3  Score=45.77  Aligned_cols=99  Identities=12%  Similarity=0.085  Sum_probs=56.5

Q ss_pred             cCeEEEEEcCCCeEEEEeCCCcEEEEecCCC-----e--E-EEEecC-----CCcEEEEEEeeCCCCEEEEEeCC-----
Q 006424          288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-----Q--C-LNVFDH-----HNYVTCVQFNPIDDNYFISGSID-----  349 (645)
Q Consensus       288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~-----~--~-~~~~~~-----~~~v~~l~~~p~~~~~l~s~s~d-----  349 (645)
                      .....+++.+++ |+.++.....++.|....     +  . +..+..     ......++|.| ++.+.++-+..     
T Consensus        72 ~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~  149 (367)
T TIGR02604        72 SMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKV  149 (367)
T ss_pred             CCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCcee
Confidence            345778888888 555555443344454321     1  1 122221     34477899999 88876655421     


Q ss_pred             --------------CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe
Q 006424          350 --------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS  388 (645)
Q Consensus       350 --------------g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~  388 (645)
                                    |.|.-+|..+++...+...-.....++|+|+|+++++-.
T Consensus       150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                          345555665555444333334456789999888766533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.39  E-value=9.3  Score=41.58  Aligned_cols=96  Identities=9%  Similarity=0.026  Sum_probs=58.9

Q ss_pred             CCcEEEEecCCCeEEEEecC--CC------------------------------cEE-EEEEeeCCCCEEEEEeCC----
Q 006424          307 DKTVRMWQVGCNQCLNVFDH--HN------------------------------YVT-CVQFNPIDDNYFISGSID----  349 (645)
Q Consensus       307 dg~I~iwd~~~~~~~~~~~~--~~------------------------------~v~-~l~~~p~~~~~l~s~s~d----  349 (645)
                      +|.|..+|.++|+.+-.+..  ..                              .++ .+++.| ..++++.+..+    
T Consensus       180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~  258 (527)
T TIGR03075       180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPW  258 (527)
T ss_pred             CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCC
Confidence            67888889888887765531  00                              111 235566 45566555421    


Q ss_pred             -C-----------cEEEEeCCCCcEEEee---ccC-------CCeEEEEEccCCC---EEEEEecCCeEEEEEecCCce
Q 006424          350 -G-----------KVRIWGVCEKRVVDWA---DVR-------DVISAICYIPDGK---GFIVGSITGTCHFYKASGNDL  403 (645)
Q Consensus       350 -g-----------~i~vwd~~~~~~~~~~---~~~-------~~v~~l~~sp~g~---~l~~g~~dg~i~iwd~~~~~~  403 (645)
                       +           .|.-.|++++++.-..   .|.       ....-+.+..+|+   .++.+..+|.+++.|..+++.
T Consensus       259 ~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       259 NSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             CCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence             2           5777788888876422   221       1122233334666   778899999999999988765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.25  E-value=2.9  Score=45.85  Aligned_cols=183  Identities=13%  Similarity=0.117  Sum_probs=99.9

Q ss_pred             eEEEEeCC------CcEEEEecCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCcEEEe
Q 006424          300 YLLSCSMD------KTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDW  365 (645)
Q Consensus       300 ~l~s~s~d------g~I~iwd~~~~~~~~~~--~~~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~~~~~~~  365 (645)
                      .++.|+.+      ..+..+|..+++.....  .....-.+++..  ++.+.++|+.|      .++..||.++++-...
T Consensus       287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            55666666      46888898877544433  233344555555  57888999988      3588899888775443


Q ss_pred             eccCCCeEEEEEc-cCCCEEEEEecCC-----eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424          366 ADVRDVISAICYI-PDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  439 (645)
Q Consensus       366 ~~~~~~v~~l~~s-p~g~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~  439 (645)
                      ......-...... -+|...++|+.||     ++..||..+............     ......+.+  +| .+.++|+.
T Consensus       365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-----r~~~gv~~~--~g-~iYi~GG~  436 (571)
T KOG4441|consen  365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-----RSGHGVAVL--GG-KLYIIGGG  436 (571)
T ss_pred             CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-----eeeeEEEEE--CC-EEEEEcCc
Confidence            3322221222211 2678888899887     467788776665332100000     011111222  33 67778876


Q ss_pred             CC------eEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCCc-----cEEEEeCCCCC
Q 006424          440 DS------KLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDELC  494 (645)
Q Consensus       440 dg------~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~dg-----~I~iwd~~~~~  494 (645)
                      ++      .+..||..+..-....  ....... +++ .-++...+.||.|+     +|..||..+.+
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECCccCCCccceEEEEcCCCCc
Confidence            54      4566775432211111  1111111 122 23677888888776     36777776654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.23  E-value=2.7  Score=40.25  Aligned_cols=114  Identities=11%  Similarity=0.123  Sum_probs=72.6

Q ss_pred             CeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc-EEEEeCCCCcEEE-e--eccCCCeEEEEEccCCCEEEEEec----
Q 006424          318 NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-VRIWGVCEKRVVD-W--ADVRDVISAICYIPDGKGFIVGSI----  389 (645)
Q Consensus       318 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~-i~vwd~~~~~~~~-~--~~~~~~v~~l~~sp~g~~l~~g~~----  389 (645)
                      |+++...........++|+|....-++.+-.-|+ ..++|..+.+... .  .......-.=.|||||.+|+..-.    
T Consensus        58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~  137 (366)
T COG3490          58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP  137 (366)
T ss_pred             CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC
Confidence            5566666556666778888866667777766665 5788887755332 1  111222223479999999987644    


Q ss_pred             -CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424          390 -TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  438 (645)
Q Consensus       390 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s  438 (645)
                       .|.|-+||.+..-...-.+      ..++-....+.|.+|| ..++.+.
T Consensus       138 ~rGViGvYd~r~~fqrvgE~------~t~GiGpHev~lm~DG-rtlvvan  180 (366)
T COG3490         138 NRGVIGVYDAREGFQRVGEF------STHGIGPHEVTLMADG-RTLVVAN  180 (366)
T ss_pred             CCceEEEEecccccceeccc------ccCCcCcceeEEecCC-cEEEEeC
Confidence             3789999998554433222      2334556678999998 5555543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.12  E-value=1.5  Score=46.34  Aligned_cols=155  Identities=9%  Similarity=0.140  Sum_probs=85.6

Q ss_pred             CcEEEEEEeeCCCCEEEEEe---CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccC----CCEEEEEecCCeEEEEEecC
Q 006424          328 NYVTCVQFNPIDDNYFISGS---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPD----GKGFIVGSITGTCHFYKASG  400 (645)
Q Consensus       328 ~~v~~l~~~p~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~----g~~l~~g~~dg~i~iwd~~~  400 (645)
                      .++..++|.  ||+.++-..   .+|.+++=|-      ...+.-..|..++|.|-    ...+++.-....|.+|.+..
T Consensus        20 HPvhGlaWT--DGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT--DGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec--CCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            478889997  566554432   1233322221      12334456899999984    33566666788999999863


Q ss_pred             CceeeeEEeeccc-cccCCCC--eEEEEEcCCCCcEEEEEECCCeEEEEECC-cceeeEeecCCCCCeEEEEEecCCCEE
Q 006424          401 NDLKLEKVDFHDR-KKTSGNK--ITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHI  476 (645)
Q Consensus       401 ~~~~~~~~~~~~~-~~~~~~~--i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l  476 (645)
                      ......+....+. .....-+  -..+.|+|.. ..|++-.....-.+++.+ +..+........+.|.+.+|.+||+.|
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence            2222111111110 0000111  2356799985 555555544443445544 222222223467889999999999987


Q ss_pred             EEEe-CCccEEEEeCC
Q 006424          477 ISIG-DDCRVYVWNYD  491 (645)
Q Consensus       477 ~t~s-~dg~I~iwd~~  491 (645)
                      +.+- +.=.-+|||-.
T Consensus       171 VVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEeCCeEEEEEecCc
Confidence            7653 34456888743

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.08  E-value=1.9  Score=36.50  Aligned_cols=106  Identities=13%  Similarity=0.176  Sum_probs=71.1

Q ss_pred             EEcCCC-eEEEEeCCCcEEEEecCC--------CeEEEEecCCCcEEEEEEeeC----CCCEEEEEeCCCcEEEEeCCCC
Q 006424          294 AWSNSN-YLLSCSMDKTVRMWQVGC--------NQCLNVFDHHNYVTCVQFNPI----DDNYFISGSIDGKVRIWGVCEK  360 (645)
Q Consensus       294 ~~s~~~-~l~s~s~dg~I~iwd~~~--------~~~~~~~~~~~~v~~l~~~p~----~~~~l~s~s~dg~i~vwd~~~~  360 (645)
                      .|.... .|+.++.-|.|.|++...        ...+..+.....|++++--+.    ..+.|+.|+ ...+..||+...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N   83 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN   83 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence            444333 688888889999998753        334566677788888876552    345677776 567999999998


Q ss_pred             cEEEeeccCCCeEEEEEcc----CCCEEEEEecCCeEEEEEecCC
Q 006424          361 RVVDWADVRDVISAICYIP----DGKGFIVGSITGTCHFYKASGN  401 (645)
Q Consensus       361 ~~~~~~~~~~~v~~l~~sp----~g~~l~~g~~dg~i~iwd~~~~  401 (645)
                      .-+......+.++++.+-.    ....+++| .+-.|.-||....
T Consensus        84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~  127 (136)
T PF14781_consen   84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN  127 (136)
T ss_pred             chhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence            8887778888888888743    23344443 3444555554443

>PHA03098 kelch-like protein; Provisional

Probab=94.06  E-value=3.2  Score=45.52  Aligned_cols=182  Identities=12%  Similarity=0.094  Sum_probs=88.3

Q ss_pred             CeEEEEeCCC------cEEEEecCCCeEEEEecC--CCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCcEEEe
Q 006424          299 NYLLSCSMDK------TVRMWQVGCNQCLNVFDH--HNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDW  365 (645)
Q Consensus       299 ~~l~s~s~dg------~I~iwd~~~~~~~~~~~~--~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~  365 (645)
                      ..++.|+.++      .+..||..+++....-..  ...-.+++. - ++.+++.||.+     ..+..||..+++-...
T Consensus       296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV-F-NNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE-E-CCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            3556666542      577888877765432221  111112222 2 67788888865     3477888877664443


Q ss_pred             eccCCC--eEEEEEccCCCEEEEEecC------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006424          366 ADVRDV--ISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  437 (645)
Q Consensus       366 ~~~~~~--v~~l~~sp~g~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~  437 (645)
                      .....+  -.+++ .-+++..+.|+.+      ..+..||..+....... .....    ... .++... ++ .+++.|
T Consensus       374 ~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~----r~~-~~~~~~-~~-~iyv~G  444 (534)
T PHA03098        374 PPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS-PLPIS----HYG-GCAIYH-DG-KIYVIG  444 (534)
T ss_pred             CCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC-CCCcc----ccC-ceEEEE-CC-EEEEEC
Confidence            222111  11222 2356666666632      35788888766543211 01110    011 122222 33 566666


Q ss_pred             ECC--------CeEEEEECCccee-eEeecC-CCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCC
Q 006424          438 SED--------SKLRILDGVDVIH-KFKGLP-KSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  493 (645)
Q Consensus       438 s~d--------g~I~iwd~~~~~~-~~~~~~-~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~  493 (645)
                      +.+        ..+.+||..+..- ...... .......+.  .+++.++.||.+     ..|.+||..+.
T Consensus       445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            543        2378888653211 111100 111111222  267777777654     46777777655

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.03  E-value=6.3  Score=38.26  Aligned_cols=158  Identities=13%  Similarity=0.088  Sum_probs=91.3

Q ss_pred             cEEEEEEeeCCCCEEEEEe---CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEE-ecCCcee
Q 006424          329 YVTCVQFNPIDDNYFISGS---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK-ASGNDLK  404 (645)
Q Consensus       329 ~v~~l~~~p~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd-~~~~~~~  404 (645)
                      .+...++++ +++.++...   ....++++..........  ....+..-.|++++...++...+...+++. .......
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688899999 787766555   334455555433322222  334788889999987777766666666664 2233222


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE--CCCeEEEEECC---cc-e----eeEee-cCCCCCeEEEEEecCC
Q 006424          405 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS--EDSKLRILDGV---DV-I----HKFKG-LPKSGSQMSASFTTTG  473 (645)
Q Consensus       405 ~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s--~dg~I~iwd~~---~~-~----~~~~~-~~~~~~i~~v~~sp~~  473 (645)
                      .........    ...|+.+.+||||.+..+...  .++.|.+--+.   .. .    ..... ......+..+.|.+++
T Consensus       102 ~~~v~~~~~----~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~  177 (253)
T PF10647_consen  102 PVEVDWPGL----RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS  177 (253)
T ss_pred             eEEeccccc----CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence            222222221    127999999999954444442  34667665422   11 0    11111 1234678999999999


Q ss_pred             CEEEEEeCCc-cEEE-EeCCCC
Q 006424          474 KHIISIGDDC-RVYV-WNYDEL  493 (645)
Q Consensus       474 ~~l~t~s~dg-~I~i-wd~~~~  493 (645)
                      .+++.+...+ .+.. .....+
T Consensus       178 ~L~V~~~~~~~~~~~~v~~dG~  199 (253)
T PF10647_consen  178 TLVVLGRSAGGPVVRLVSVDGG  199 (253)
T ss_pred             EEEEEeCCCCCceeEEEEccCC
Confidence            8887776543 3443 444443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.93  E-value=1.8  Score=44.38  Aligned_cols=101  Identities=18%  Similarity=0.249  Sum_probs=55.6

Q ss_pred             CCCcEEEEecCCCeEEEEecCC---CcEEEEEEeeC-CCCE-EEEEeCCCcEEEEeC-CCCc-----EEEeec-------
Q 006424          306 MDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPI-DDNY-FISGSIDGKVRIWGV-CEKR-----VVDWAD-------  367 (645)
Q Consensus       306 ~dg~I~iwd~~~~~~~~~~~~~---~~v~~l~~~p~-~~~~-l~s~s~dg~i~vwd~-~~~~-----~~~~~~-------  367 (645)
                      ...++.+||+.+.+.++++...   ..+..+.|.+. +..+ ++.+...++|..|-- ..++     ++.+..       
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            3468999999999999998743   34567777651 2223 444444556655543 3332     222211       


Q ss_pred             ---c-------CCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeee
Q 006424          368 ---V-------RDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE  406 (645)
Q Consensus       368 ---~-------~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~  406 (645)
                         .       ..-|+.|.+|.|.++|++++ ..|.++.||+.....+..
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl  349 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL  349 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence               1       34578999999999998876 589999999987665544

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.54  E-value=7.7  Score=40.44  Aligned_cols=149  Identities=11%  Similarity=0.099  Sum_probs=91.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCc-----EEEeeccCCCeEEEEEcc----CC-CEEEEEecCCeEEEEEecCCcee----
Q 006424          339 DDNYFISGSIDGKVRIWGVCEKR-----VVDWADVRDVISAICYIP----DG-KGFIVGSITGTCHFYKASGNDLK----  404 (645)
Q Consensus       339 ~~~~l~s~s~dg~i~vwd~~~~~-----~~~~~~~~~~v~~l~~sp----~g-~~l~~g~~dg~i~iwd~~~~~~~----  404 (645)
                      +...+++||..|.++||+...+.     ++--...+.+|..+..-+    .. ..||+ -.-..+.+|.+......    
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            45689999999999999986533     333445667888777543    22 34444 56778888888432211    


Q ss_pred             --ee-EEeeccccccCCCCeEEEEEcC----CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEE
Q 006424          405 --LE-KVDFHDRKKTSGNKITGIQFSR----DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII  477 (645)
Q Consensus       405 --~~-~~~~~~~~~~~~~~i~~i~~s~----~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~  477 (645)
                        .. ...+....   .....+++.-|    .|..++.+-+.||.+.+|+-+...-..... .---...++|.+....++
T Consensus       115 ~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp-~~llPgPl~Y~~~tDsfv  190 (418)
T PF14727_consen  115 NQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP-DFLLPGPLCYCPRTDSFV  190 (418)
T ss_pred             cEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC-CCCCCcCeEEeecCCEEE
Confidence              01 11111111   12233333333    224688899999999999976543222221 122233567888899999


Q ss_pred             EEeCCccEEEEeCCC
Q 006424          478 SIGDDCRVYVWNYDE  492 (645)
Q Consensus       478 t~s~dg~I~iwd~~~  492 (645)
                      +++.+..+..|.+..
T Consensus       191 t~sss~~l~~Yky~~  205 (418)
T PF14727_consen  191 TASSSWTLECYKYQD  205 (418)
T ss_pred             EecCceeEEEecHHH
Confidence            999999999998754

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.50  E-value=9.7  Score=38.67  Aligned_cols=68  Identities=18%  Similarity=0.124  Sum_probs=39.6

Q ss_pred             CCeEEEEEcCCC------CcEEEEEECCCeEEEEECCccee---eEee-cCCCCCeEEEEEecCCCEEEEEeCCccEE
Q 006424          419 NKITGIQFSRDE------SQRIMITSEDSKLRILDGVDVIH---KFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVY  486 (645)
Q Consensus       419 ~~i~~i~~s~~g------~~~l~~~s~dg~I~iwd~~~~~~---~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~  486 (645)
                      ..++.+.|....      ..++++.-..+.|....+.....   .... ......+..+++.|||.+.++.+.+|.|+
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            456667766431      14555555566777776542211   1111 22344799999999999999888888875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA02713 hypothetical protein; Provisional

Probab=93.50  E-value=7.7  Score=42.59  Aligned_cols=93  Identities=14%  Similarity=0.179  Sum_probs=51.0

Q ss_pred             cEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCcEEEeeccCCCeE-EEEEcc
Q 006424          309 TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWADVRDVIS-AICYIP  379 (645)
Q Consensus       309 ~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~v~-~l~~sp  379 (645)
                      .+..||..+++....-.  ....-.+++..  ++.+++.|+.+      ..+..||..++.-........+-. .....-
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence            56778887665433222  11111223332  67777888754      347889988776544332221111 111223


Q ss_pred             CCCEEEEEecCC-----eEEEEEecCCce
Q 006424          380 DGKGFIVGSITG-----TCHFYKASGNDL  403 (645)
Q Consensus       380 ~g~~l~~g~~dg-----~i~iwd~~~~~~  403 (645)
                      +|+..++|+.++     .+..||..+...
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            677778887654     478899887654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.42  E-value=9  Score=38.07  Aligned_cols=190  Identities=9%  Similarity=0.034  Sum_probs=91.0

Q ss_pred             CeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE-E
Q 006424          289 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-V  363 (645)
Q Consensus       289 ~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~----~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~-~  363 (645)
                      ...++.|..+..+++| ..+ +.+...+.|+.-..+.    .+.....+.... ++ ....++..|.|+.-. +.++. .
T Consensus        63 ~l~~I~f~~~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~T~-DgG~tW~  137 (302)
T PF14870_consen   63 HLNSISFDGNEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYRTT-DGGKTWQ  137 (302)
T ss_dssp             EEEEEEEETTEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEEES-STTSSEE
T ss_pred             eEEEEEecCCceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEEeC-CCCCCee
Confidence            3566777654444444 344 3333334444333322    223334444444 33 333344455544322 23332 1


Q ss_pred             -EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCe
Q 006424          364 -DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK  442 (645)
Q Consensus       364 -~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~  442 (645)
                       ........+..+.-+++|++++++.......-||.........       .+....+|.++.|.|++ .+.+ ..+.|.
T Consensus       138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~-------~r~~~~riq~~gf~~~~-~lw~-~~~Gg~  208 (302)
T PF14870_consen  138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH-------NRNSSRRIQSMGFSPDG-NLWM-LARGGQ  208 (302)
T ss_dssp             EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE-------E--SSS-EEEEEE-TTS--EEE-EETTTE
T ss_pred             EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE-------ccCccceehhceecCCC-CEEE-EeCCcE
Confidence             2344557788888999999999887666666777654333221       11123789999999997 4444 448999


Q ss_pred             EEEEECCcceeeEee-----cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          443 LRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       443 I~iwd~~~~~~~~~~-----~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      |+.=+.......+..     ....-.+..++|.+++...++|+. |.+. ...+.++
T Consensus       209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGk  263 (302)
T PF14870_consen  209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGK  263 (302)
T ss_dssp             EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTS
T ss_pred             EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCc
Confidence            998873322222221     123345899999998888877664 4333 3556664

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.20  E-value=9.6  Score=37.75  Aligned_cols=166  Identities=11%  Similarity=0.146  Sum_probs=94.5

Q ss_pred             cEEEEecCCCeEEEEec-------CCCcEEEEEEeeCCC----CEEEEEe-CCCcEEEEeCCCCcEEEeecc--------
Q 006424          309 TVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDD----NYFISGS-IDGKVRIWGVCEKRVVDWADV--------  368 (645)
Q Consensus       309 ~I~iwd~~~~~~~~~~~-------~~~~v~~l~~~p~~~----~~l~s~s-~dg~i~vwd~~~~~~~~~~~~--------  368 (645)
                      .|.+||+.+++.++.+.       ..+.+..+.+...++    .+++.+. ..+.|.|+|+.+++..++..+        
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            68899999999888774       345678888876332    2333333 345799999999876554322        


Q ss_pred             ------------CCCeEEEEEcc---CCCEEEEEecCCeEEEEEecCCcee-----ee-----EEeeccccccCCCCeEE
Q 006424          369 ------------RDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLK-----LE-----KVDFHDRKKTSGNKITG  423 (645)
Q Consensus       369 ------------~~~v~~l~~sp---~g~~l~~g~~dg~i~iwd~~~~~~~-----~~-----~~~~~~~~~~~~~~i~~  423 (645)
                                  .+.+..++.+|   +|+.|+-+...+. ++|.+.+..+.     ..     .+...+.   .......
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---k~~~s~g  190 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD---KGSQSDG  190 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc---cCCCCce
Confidence                        12255556555   5556665544332 23333211110     00     0001111   1135667


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEEECCc-----ceeeEeecCC-CCCeEEEEEec--CCCEEEEE
Q 006424          424 IQFSRDESQRIMITSEDSKLRILDGVD-----VIHKFKGLPK-SGSQMSASFTT--TGKHIISI  479 (645)
Q Consensus       424 i~~s~~g~~~l~~~s~dg~I~iwd~~~-----~~~~~~~~~~-~~~i~~v~~sp--~~~~l~t~  479 (645)
                      ++++++| .++++--..+.|..|+...     ....+..... -..+.++.+.+  +|.+.+.+
T Consensus       191 ~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  191 MAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEEETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             EEECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            8888987 8888888999999999775     3333333222 45778888888  66655554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.11  E-value=8.7  Score=37.00  Aligned_cols=184  Identities=8%  Similarity=0.091  Sum_probs=101.9

Q ss_pred             CeEEEEEcCCC-eEEEEeCCC--cEEEEecCCCeEEEEecCCC--cEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE
Q 006424          289 DVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  363 (645)
Q Consensus       289 ~V~~l~~s~~~-~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~--~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~  363 (645)
                      -...+.|.+++ .+-+.+.-|  .|+.+|+.+++.........  --..++..  ++.+....-.++...+||..+-+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence            34567775666 555666665  79999999999877665332  23344554  4455555667899999999987776


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeE
Q 006424          364 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL  443 (645)
Q Consensus       364 ~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I  443 (645)
                      ........=..++  .+++.|+.+.....++++|..+.... ..+...... ..-..++-+.|. +| ...|=.=....|
T Consensus       124 ~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~-~~i~V~~~g-~pv~~LNELE~i-~G-~IyANVW~td~I  197 (264)
T PF05096_consen  124 GTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV-RTIQVTDNG-RPVSNLNELEYI-NG-KIYANVWQTDRI  197 (264)
T ss_dssp             EEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE-EEEE-EETT-EE---EEEEEEE-TT-EEEEEETTSSEE
T ss_pred             EEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceE-EEEEEEECC-EECCCcEeEEEE-cC-EEEEEeCCCCeE
Confidence            6555555556666  57888888888889999998765543 233322210 011234445554 22 333333333444


Q ss_pred             EEEECC-----------cceeeEee----cCCCCCeEEEEEecCCCEEEEEe
Q 006424          444 RILDGV-----------DVIHKFKG----LPKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       444 ~iwd~~-----------~~~~~~~~----~~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      ...|..           ........    .....-.++++++|..+.+...|
T Consensus       198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            444433           22111111    11245679999998876655544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.06  E-value=9.2  Score=37.12  Aligned_cols=149  Identities=17%  Similarity=0.147  Sum_probs=85.0

Q ss_pred             CeEEEEEcCCC-eEEEEe-CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe-CCCCc--EE
Q 006424          289 DVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG-VCEKR--VV  363 (645)
Q Consensus       289 ~V~~l~~s~~~-~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd-~~~~~--~~  363 (645)
                      .+...+.++++ .++... .++.-.+|-...+...........+..-.|++ ++...+....+...+++. ...+.  ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            68888999987 444433 23333444333333333332334778889999 777777766666667763 33332  22


Q ss_pred             E--eeccCCCeEEEEEccCCCEEEEEe---cCCeEEEEEecCCcee--eeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          364 D--WADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLK--LEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       364 ~--~~~~~~~v~~l~~sp~g~~l~~g~---~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      .  .......|.++.++|||..++...   .++.|.+--+.....-  ................++.+.|.+++ .+++.
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~  182 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVL  182 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEEE
Confidence            2  222223899999999999888766   3467776655321111  11111111111123678999999997 55554


Q ss_pred             EEC
Q 006424          437 TSE  439 (645)
Q Consensus       437 ~s~  439 (645)
                      +..
T Consensus       183 ~~~  185 (253)
T PF10647_consen  183 GRS  185 (253)
T ss_pred             eCC
Confidence            443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.05  E-value=16  Score=39.82  Aligned_cols=194  Identities=15%  Similarity=0.116  Sum_probs=108.0

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCC--cEE----------EEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVT----------CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  365 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~--~v~----------~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~  365 (645)
                      ++.++.++.++.|.-.|..+|+.+-.+....  .+.          .+++   .+..++.++.|+.|..+|.++++.+-.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence            5688888888999999999999887775321  111          1222   235677788899999999999988753


Q ss_pred             eccCCC--eEEEEEcc--CCCEEEEEec------CCeEEEEEecCCceeeeEEeecccc---------------------
Q 006424          366 ADVRDV--ISAICYIP--DGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRK---------------------  414 (645)
Q Consensus       366 ~~~~~~--v~~l~~sp--~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~---------------------  414 (645)
                      ......  -..+.-+|  .+..++++..      +|.|.-+|..+++..-.........                     
T Consensus       146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~  225 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG  225 (527)
T ss_pred             cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence            332110  01111122  1234555543      6889999998877644321111100                     


Q ss_pred             ----ccCCCCeEEEEEcCCCCcEEEEEECC-----C-----------eEEEEECCcceee--EeecCCC-------CCeE
Q 006424          415 ----KTSGNKITGIQFSRDESQRIMITSED-----S-----------KLRILDGVDVIHK--FKGLPKS-------GSQM  465 (645)
Q Consensus       415 ----~~~~~~i~~i~~s~~g~~~l~~~s~d-----g-----------~I~iwd~~~~~~~--~~~~~~~-------~~i~  465 (645)
                          ......-..+++.|.. .+++.+...     +           .|.-.|.++....  ++...|.       ....
T Consensus       226 ~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~  304 (527)
T TIGR03075       226 DAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI  304 (527)
T ss_pred             CccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence                0000111234566653 455555422     2           3444444433222  2222221       1112


Q ss_pred             EEEEecCCC---EEEEEeCCccEEEEeCCCCCc
Q 006424          466 SASFTTTGK---HIISIGDDCRVYVWNYDELCF  495 (645)
Q Consensus       466 ~v~~sp~~~---~l~t~s~dg~I~iwd~~~~~~  495 (645)
                      -+.+..+|+   .++.++.+|.+++.|..+++.
T Consensus       305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             EEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            223334665   788999999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.78  E-value=4.5  Score=44.19  Aligned_cols=110  Identities=15%  Similarity=0.260  Sum_probs=70.9

Q ss_pred             EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEee--ccCCCeEEEEEc--cCCCEEEEEecCCeEEEEEec-----CC
Q 006424          331 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--DVRDVISAICYI--PDGKGFIVGSITGTCHFYKAS-----GN  401 (645)
Q Consensus       331 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~v~~l~~s--p~g~~l~~g~~dg~i~iwd~~-----~~  401 (645)
                      .-+.-+. -++..++-+....+.|||.+.+.+....  ...+.|..+.|.  |+|+.+++.+..+.|.+|.-.     ..
T Consensus        33 ~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   33 SLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             ceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            3333443 3444444444567999999988765433  447889999985  588888888889999888542     11


Q ss_pred             c---eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424          402 D---LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  447 (645)
Q Consensus       402 ~---~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd  447 (645)
                      .   .+...+.....   ...+|.+..|.++|  .+++|+ ++.+.|+|
T Consensus       112 ~p~w~~i~~i~i~~~---T~h~Igds~Wl~~G--~LvV~s-GNqlfv~d  154 (631)
T PF12234_consen  112 GPSWAPIRKIDISSH---TPHPIGDSIWLKDG--TLVVGS-GNQLFVFD  154 (631)
T ss_pred             CcccceeEEEEeecC---CCCCccceeEecCC--eEEEEe-CCEEEEEC
Confidence            1   12233333322   13678999999998  444444 45788887

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.58  E-value=3.1  Score=46.69  Aligned_cols=81  Identities=14%  Similarity=0.155  Sum_probs=53.4

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCeEEEEEecC---------Cce--eeeEEeecc--ccccCCCCeEEEEEcCCC--CcE
Q 006424          369 RDVISAICYIPDGKGFIVGSITGTCHFYKASG---------NDL--KLEKVDFHD--RKKTSGNKITGIQFSRDE--SQR  433 (645)
Q Consensus       369 ~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~---------~~~--~~~~~~~~~--~~~~~~~~i~~i~~s~~g--~~~  433 (645)
                      .-.|..+.++|+|++++..+..|.+.+.=.+.         +..  ....+.+..  ........|..+.|+|.+  ...
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            34588999999999999988876544432221         111  111121111  112334678899999973  378


Q ss_pred             EEEEECCCeEEEEECC
Q 006424          434 IMITSEDSKLRILDGV  449 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~  449 (645)
                      |++-+.|+++|+||+.
T Consensus       164 l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEEecCCEEEEEecC
Confidence            9999999999999976

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.52  E-value=6.6  Score=40.60  Aligned_cols=148  Identities=10%  Similarity=0.112  Sum_probs=75.6

Q ss_pred             CcEEEEEEeeCCCCEEEEEe-----------CCC-cEEEEeCCC--Cc---EEEeeccCCCeEEEEEccCCCEEEEEecC
Q 006424          328 NYVTCVQFNPIDDNYFISGS-----------IDG-KVRIWGVCE--KR---VVDWADVRDVISAICYIPDGKGFIVGSIT  390 (645)
Q Consensus       328 ~~v~~l~~~p~~~~~l~s~s-----------~dg-~i~vwd~~~--~~---~~~~~~~~~~v~~l~~sp~g~~l~~g~~d  390 (645)
                      .....++|.+ +++++++-.           ..+ .|.+++-..  ++   ...+...-...+.+++.++|  +++++..
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence            3467788888 787766642           123 676665432  22   22333334456889999888  5555544


Q ss_pred             CeEEEEEecCCcee---eeEE--eeccccccCCCCeEEEEEcCCCCcEEEEEECC-------------------CeEEEE
Q 006424          391 GTCHFYKASGNDLK---LEKV--DFHDRKKTSGNKITGIQFSRDESQRIMITSED-------------------SKLRIL  446 (645)
Q Consensus       391 g~i~iwd~~~~~~~---~~~~--~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-------------------g~I~iw  446 (645)
                      ...++.|.......   .+.+  .+......+......+.|.|+| .+.++-+..                   +.|.-+
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            43334454332111   1111  1111101113457789999998 444433311                   334444


Q ss_pred             ECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe
Q 006424          447 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       447 d~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      +........... .......++|+|+|+++++-.
T Consensus       170 ~pdg~~~e~~a~-G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       170 NPDGGKLRVVAH-GFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ecCCCeEEEEec-CcCCCccceECCCCCEEEEcc
Confidence            443222222121 223456889999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.21  E-value=2.5  Score=43.80  Aligned_cols=147  Identities=18%  Similarity=0.183  Sum_probs=88.2

Q ss_pred             CCCEEE-EEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC-------EEEEEecCCeEEEEEecCCceeeeEEee
Q 006424          339 DDNYFI-SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-------GFIVGSITGTCHFYKASGNDLKLEKVDF  410 (645)
Q Consensus       339 ~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~-------~l~~g~~dg~i~iwd~~~~~~~~~~~~~  410 (645)
                      +.++++ .|+....++-.|+..|+++..-.....+ -+.|.|..+       .-++|-.+..|.-.|.+.....+.....
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence            445444 3444556777788888887754444445 677777432       2345666666666676544322221111


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      ..-  .......|..-..+|  ++++++..|.|++||.-.....-....-...|..+..+.+|+++++.+ ...+.+-|+
T Consensus       557 KdY--~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~  631 (776)
T COG5167         557 KDY--KTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDV  631 (776)
T ss_pred             hhc--cccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEec
Confidence            110  011334444444454  999999999999999432222222333566889999999999887766 456666676


Q ss_pred             C
Q 006424          491 D  491 (645)
Q Consensus       491 ~  491 (645)
                      .
T Consensus       632 ~  632 (776)
T COG5167         632 P  632 (776)
T ss_pred             c
Confidence            4

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.09  E-value=0.51  Score=31.04  Aligned_cols=31  Identities=35%  Similarity=0.473  Sum_probs=26.6

Q ss_pred             CcEEEEEECCCC---CEEEEEeCCCcEEEEEcCC
Q 006424          201 GCIWTLKFSPDG---RYLASGGEDGVVRIWHVTS  231 (645)
Q Consensus       201 ~~V~~l~fspdg---~~L~sgs~Dg~I~iwd~~~  231 (645)
                      |+|.+|.|||+.   .+|+-+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            579999999854   4888888889999999985

It contains a characteristic DLL sequence motif.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.91  E-value=18  Score=37.72  Aligned_cols=52  Identities=15%  Similarity=0.148  Sum_probs=38.3

Q ss_pred             CcEEEEEEeeC----------CCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc
Q 006424          328 NYVTCVQFNPI----------DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP  379 (645)
Q Consensus       328 ~~v~~l~~~p~----------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp  379 (645)
                      ..|+++.+-|.          +...+++|..+|.|++|......+....-|..+|..+.+..
T Consensus        57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence            57888877663          35678999999999999986655555555677777777643

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=91.74  E-value=28  Score=39.58  Aligned_cols=183  Identities=11%  Similarity=0.036  Sum_probs=105.1

Q ss_pred             eEEEEeCCCcEEEEecCCCeE--EEEecCCCcEEEEEEeeCCCCEEEEEeCC--------------CcEEEEeCCCCcEE
Q 006424          300 YLLSCSMDKTVRMWQVGCNQC--LNVFDHHNYVTCVQFNPIDDNYFISGSID--------------GKVRIWGVCEKRVV  363 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~v~~l~~~p~~~~~l~s~s~d--------------g~i~vwd~~~~~~~  363 (645)
                      .++++.. +.+++--++.-+.  +++.........+++.+ ....+++.+..              ..++++|-.+-+..
T Consensus       686 ~l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl  763 (1096)
T KOG1897|consen  686 SLASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL  763 (1096)
T ss_pred             eEEEecC-CceEEEEecchhhcceeeecCCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence            3444443 4566666543322  23344445566667765 34444433321              23677777776665


Q ss_pred             EeeccC-----CCeEEEEEccC-CCEEEEEec----------CCeEEEEEecC-CceeeeEEeeccccccCCCCeEEEEE
Q 006424          364 DWADVR-----DVISAICYIPD-GKGFIVGSI----------TGTCHFYKASG-NDLKLEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       364 ~~~~~~-----~~v~~l~~sp~-g~~l~~g~~----------dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                      ......     ..+.++.|..| +.++++|+.          .|.|.+|.... +....  ..-..    -.+.+.++..
T Consensus       764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~--v~e~~----v~Gav~aL~~  837 (1096)
T KOG1897|consen  764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL--VAETV----VKGAVYALVE  837 (1096)
T ss_pred             eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee--eeeee----eccceeehhh
Confidence            543322     23455558777 778888863          57888888876 22211  11111    1244555443


Q ss_pred             cCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          427 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      -. | +++|  +-...|++|+..+.........+..++..+...-.|..++.|..=+.+.+-.++..+
T Consensus       838 fn-g-kllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  838 FN-G-KLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE  901 (1096)
T ss_pred             hC-C-eEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence            33 2 3443  445689999876543333333467788889998899999999888888777666543

>PHA02790 Kelch-like protein; Provisional

Probab=91.72  E-value=9.3  Score=41.13  Aligned_cols=103  Identities=8%  Similarity=0.076  Sum_probs=56.4

Q ss_pred             eEEEEeCCC-----cEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC--CcEEEEeCCCCcEEEeeccCC
Q 006424          300 YLLSCSMDK-----TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID--GKVRIWGVCEKRVVDWADVRD  370 (645)
Q Consensus       300 ~l~s~s~dg-----~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~  370 (645)
                      .++.||.++     ++..||..+++....-.  ....-.+++. - ++.+.+.|+.+  ..+..||..+++-........
T Consensus       274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~  351 (480)
T PHA02790        274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK  351 (480)
T ss_pred             EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence            556676543     56778887765443322  1111112222 2 67777888754  358888887765544333322


Q ss_pred             CeEE-EEEccCCCEEEEEecCC---eEEEEEecCCcee
Q 006424          371 VISA-ICYIPDGKGFIVGSITG---TCHFYKASGNDLK  404 (645)
Q Consensus       371 ~v~~-l~~sp~g~~l~~g~~dg---~i~iwd~~~~~~~  404 (645)
                      +... ....-+|+..++|+.++   .+..||..+....
T Consensus       352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~  389 (480)
T PHA02790        352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQ  389 (480)
T ss_pred             CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence            2211 11223677777777553   4677887766543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.70  E-value=11  Score=41.83  Aligned_cols=110  Identities=12%  Similarity=0.149  Sum_probs=74.7

Q ss_pred             cCeEEEEEc---CCCeEEEEeCCCcEEEEecCC-------C-------------eEEEEecCCCcEEEEEEe--eCCCCE
Q 006424          288 GDVLDLAWS---NSNYLLSCSMDKTVRMWQVGC-------N-------------QCLNVFDHHNYVTCVQFN--PIDDNY  342 (645)
Q Consensus       288 ~~V~~l~~s---~~~~l~s~s~dg~I~iwd~~~-------~-------------~~~~~~~~~~~v~~l~~~--p~~~~~  342 (645)
                      ..|+.+...   ....|+.|..||.|.+|.+++       .             ++-..+.....+++++++  . ..++
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rl  179 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRL  179 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceE
Confidence            345555443   234899999999999996521       1             012223456689999998  6 6778


Q ss_pred             EEEEeCCCcEEEEeCCC--CcEEE--eeccCCCeEEEEEccCC---C---EEEEEecCCeEEEEEe
Q 006424          343 FISGSIDGKVRIWGVCE--KRVVD--WADVRDVISAICYIPDG---K---GFIVGSITGTCHFYKA  398 (645)
Q Consensus       343 l~s~s~dg~i~vwd~~~--~~~~~--~~~~~~~v~~l~~sp~g---~---~l~~g~~dg~i~iwd~  398 (645)
                      +|+++....|.||-...  .+...  ...+...|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888888888885543  22111  22466778999997743   2   7778889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.56  E-value=0.062  Score=58.57  Aligned_cols=118  Identities=11%  Similarity=0.075  Sum_probs=65.7

Q ss_pred             eccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCcee---eeEEeeccccccCCCCeEEEEEcC---CCCcEEEEEE
Q 006424          366 ADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLK---LEKVDFHDRKKTSGNKITGIQFSR---DESQRIMITS  438 (645)
Q Consensus       366 ~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~s~---~g~~~l~~~s  438 (645)
                      .+..+.+-.+.|-. +...+.  ..-|.+.+||+.--.-.   ...+.....   .+..+.-+.|+|   +. .++..+-
T Consensus       129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p---~gs~~~~V~wcp~~~~~-~~ic~~~  202 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITP---YGSDPQLVSWCPIAVNK-VYICYGL  202 (1283)
T ss_pred             hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCc---CCCCcceeeeccccccc-ceeeecc
Confidence            34455565666532 111111  33467888887532111   111111111   123445556655   43 5777777


Q ss_pred             CCCeEEEEECCcce-eeEeecCCCCCeEEE-----------EEecCCCEEEEEeCCccEEEEeCC
Q 006424          439 EDSKLRILDGVDVI-HKFKGLPKSGSQMSA-----------SFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       439 ~dg~I~iwd~~~~~-~~~~~~~~~~~i~~v-----------~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      .++.|++.+..+.. ..+..  |...++.+           ..||||..+++++.||.+++|.+.
T Consensus       203 ~~~~i~lL~~~ra~~~l~rs--Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  203 KGGEIRLLNINRALRSLFRS--HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             CCCceeEeeechHHHHHHHh--cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            88899887755322 23333  44444443           368999999999999999988753

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.51  E-value=0.61  Score=30.67  Aligned_cols=32  Identities=22%  Similarity=0.406  Sum_probs=26.8

Q ss_pred             CcEEEEEEeeCCC--CEEEEEeCCCcEEEEeCCC
Q 006424          328 NYVTCVQFNPIDD--NYFISGSIDGKVRIWGVCE  359 (645)
Q Consensus       328 ~~v~~l~~~p~~~--~~l~s~s~dg~i~vwd~~~  359 (645)
                      +.++++.|+|..+  ++|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3689999998455  6888888889999999985

It contains a characteristic DLL sequence motif.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.45  E-value=24  Score=38.77  Aligned_cols=183  Identities=13%  Similarity=0.260  Sum_probs=90.2

Q ss_pred             CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEE--ec---CCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV--FD---HHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~--~~---~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                      +..+..+.-..+.+..+.|+.+..|+....+|++++|++. |..+..  .+   ....|..+.+.. +|=.+.+  .+|.
T Consensus        73 G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~-~GVavlt--~~g~  148 (829)
T KOG2280|consen   73 GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFH-NGVAVLT--VSGQ  148 (829)
T ss_pred             ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEec-CceEEEe--cCCc
Confidence            3444444333448889999988899999999999999985 333333  21   223355555544 4433333  3455


Q ss_pred             EEEE-eCCCCcEEEeecc---CCCeEEEEEccCCC---EEEEEe-cCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424          352 VRIW-GVCEKRVVDWADV---RDVISAICYIPDGK---GFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  423 (645)
Q Consensus       352 i~vw-d~~~~~~~~~~~~---~~~v~~l~~sp~g~---~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (645)
                      +.+- +............   ...-+|-...+++.   .++-.. ..| ..++-..........+..      ....+..
T Consensus       149 v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~------~~~~~~k  221 (829)
T KOG2280|consen  149 VILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSW------PNSSVVK  221 (829)
T ss_pred             EEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCC------CCceEEE
Confidence            4443 3433333332221   11112222222221   111110 000 011111111111110100      1256888


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecC
Q 006424          424 IQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT  472 (645)
Q Consensus       424 i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~  472 (645)
                      +..||+. ++|+.-...|.|.+-+..  +....+....+. +...++|.-+
T Consensus       222 i~VS~n~-~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn  270 (829)
T KOG2280|consen  222 ISVSPNR-RFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN  270 (829)
T ss_pred             EEEcCCc-ceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence            9999996 799999999999988754  444444432222 2235666443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.28  E-value=4  Score=44.50  Aligned_cols=198  Identities=14%  Similarity=0.143  Sum_probs=100.3

Q ss_pred             cCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe-
Q 006424          288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-  365 (645)
Q Consensus       288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~-  365 (645)
                      +...++..+|....=..+.--.|+|+++. |+.+...- ....+..+.|+.  ...|++...+|++++|++........ 
T Consensus        44 gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~s  120 (829)
T KOG2280|consen   44 GGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESNS  120 (829)
T ss_pred             CCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhcccc
Confidence            33445555554311111333468888875 66655543 233788999984  66778888999999999876544331 


Q ss_pred             ---eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC-
Q 006424          366 ---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS-  441 (645)
Q Consensus       366 ---~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg-  441 (645)
                         ......|..+.+..+|  +++-..+|.+.+-+-........   ..... ....+-+|-...+++.+......-+- 
T Consensus       121 vg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~---~~diP-~~~~~~~~Wt~~~~~~~~~~ll~v~~~  194 (829)
T KOG2280|consen  121 VGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRK---MPDIP-YNELPKSCWTVFQPHRQSTILLDVDVA  194 (829)
T ss_pred             cccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhh---CCCCC-CccCCCcceeEecCCCcceeEEeechh
Confidence               2223345555555555  55555566555433222211111   11100 00111122222222111111111110 


Q ss_pred             -eEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          442 -KLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       442 -~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                       ...++.... ..+........+.+..+..||+.++|+--..+|.|.+-+.+..+
T Consensus       195 v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~  249 (829)
T KOG2280|consen  195 VGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ  249 (829)
T ss_pred             hhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence             001111111 11111122234678889999999999999999999998887654

>PRK13684 Ycf48-like protein; Provisional

Probab=91.26  E-value=12  Score=38.05  Aligned_cols=107  Identities=10%  Similarity=0.123  Sum_probs=62.1

Q ss_pred             ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc
Q 006424          287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  361 (645)
Q Consensus       287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~  361 (645)
                      ...++++.+.+++.++..+..|.+++=..+.+..-....     ....+..+.+.| ++..++ ++.+|.+.. ....++
T Consensus       214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~~-S~d~G~  290 (334)
T PRK13684        214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLLV-SKDGGK  290 (334)
T ss_pred             cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEEE-eCCCCC
Confidence            457888899888865666677776543344443322221     123578888988 666555 455676553 344444


Q ss_pred             EEEe----eccCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006424          362 VVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYK  397 (645)
Q Consensus       362 ~~~~----~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd  397 (645)
                      .-..    .......+.+.|..+++.+++ +..|.|.-|+
T Consensus       291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~  329 (334)
T PRK13684        291 TWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV  329 (334)
T ss_pred             CCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence            3222    122345777887766666554 4567766554

>PRK10115 protease 2; Provisional

Probab=91.22  E-value=30  Score=39.07  Aligned_cols=194  Identities=9%  Similarity=0.094  Sum_probs=89.3

Q ss_pred             EEEEEcCCC--eEEEEeCC-----CcEEEEecCCC--eEEEEecC-CCcEEEEEEeeCCCCEEEEEeC---CCcEEEEeC
Q 006424          291 LDLAWSNSN--YLLSCSMD-----KTVRMWQVGCN--QCLNVFDH-HNYVTCVQFNPIDDNYFISGSI---DGKVRIWGV  357 (645)
Q Consensus       291 ~~l~~s~~~--~l~s~s~d-----g~I~iwd~~~~--~~~~~~~~-~~~v~~l~~~p~~~~~l~s~s~---dg~i~vwd~  357 (645)
                      ..++|.+++  .+++.-.+     ..|+.+++.++  +....+.. .....-..+.+.++++++..+.   ++.+.+++.
T Consensus       175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            458998775  34443322     36888888877  33334432 2222222233326666554443   357888884


Q ss_pred             C--CCcEEEeeccC-CCeEEEEEccCCCEEEEEecC--CeEEEE--EecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          358 C--EKRVVDWADVR-DVISAICYIPDGKGFIVGSIT--GTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       358 ~--~~~~~~~~~~~-~~v~~l~~sp~g~~l~~g~~d--g~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      .  .+......... .....+. + .+..+..-+..  ...++.  ++.... ....+ +...   ....+..+.+..+ 
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~~~~~~-~~~~l-~~~~---~~~~i~~~~~~~~-  326 (686)
T PRK10115        255 ELADAEPFVFLPRRKDHEYSLD-H-YQHRFYLRSNRHGKNFGLYRTRVRDEQ-QWEEL-IPPR---ENIMLEGFTLFTD-  326 (686)
T ss_pred             cCCCCCceEEEECCCCCEEEEE-e-CCCEEEEEEcCCCCCceEEEecCCCcc-cCeEE-ECCC---CCCEEEEEEEECC-
Confidence            3  33322222222 2222222 2 23444443332  233333  333211 11111 1110   1246777888744 


Q ss_pred             CcEEEEEECCCeEEEE--ECCc-ceeeEeecCCCCCeEEEEEe--cCCC-EEEEEeC---CccEEEEeCCCCC
Q 006424          431 SQRIMITSEDSKLRIL--DGVD-VIHKFKGLPKSGSQMSASFT--TTGK-HIISIGD---DCRVYVWNYDELC  494 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iw--d~~~-~~~~~~~~~~~~~i~~v~~s--p~~~-~l~t~s~---dg~I~iwd~~~~~  494 (645)
                       .++++...++.-+++  +... ....+.. .....+..+.++  +++. ++++.++   -+.++.+|+.++.
T Consensus       327 -~l~~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        327 -WLVVEERQRGLTSLRQINRKTREVIGIAF-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             -EEEEEEEeCCEEEEEEEcCCCCceEEecC-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence             577777777765555  4321 1222211 112223333344  3433 4444443   4788888887654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=90.99  E-value=6.9  Score=42.80  Aligned_cols=113  Identities=14%  Similarity=0.127  Sum_probs=67.5

Q ss_pred             CeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeec-CCCCCeEEEEEe--cCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424          420 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL-PKSGSQMSASFT--TTGKHIISIGDDCRVYVWNYDELCFP  496 (645)
Q Consensus       420 ~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~-~~~~~i~~v~~s--p~~~~l~t~s~dg~I~iwd~~~~~~~  496 (645)
                      ..+-+.-+.-+ ...++.+....+.|||.+.....+... ...+.|..+.|.  |+|+.+++.|-...|.++--......
T Consensus        31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            34444444443 344444445689999988666555442 357889999984  68999999999999999864321111


Q ss_pred             CCcc-cCCcce--eeeeecCCcEEEEecCCCCccccccCCC
Q 006424          497 SSKQ-KNSVRS--CEHFFSEGVSVAVQWPGIGTEQKSLCSS  534 (645)
Q Consensus       497 ~~~~-~~~~~~--~~~~~~~g~~~~v~~s~~~~~l~~~~~~  534 (645)
                      .... -.....  ...+.+ .++....|.++|..++..+..
T Consensus       110 ~~~p~w~~i~~i~i~~~T~-h~Igds~Wl~~G~LvV~sGNq  149 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTP-HPIGDSIWLKDGTLVVGSGNQ  149 (631)
T ss_pred             cCCcccceeEEEEeecCCC-CCccceeEecCCeEEEEeCCE
Confidence            0000 001111  111111 346688999999988866553

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=90.95  E-value=11  Score=41.25  Aligned_cols=102  Identities=17%  Similarity=0.260  Sum_probs=53.8

Q ss_pred             eEEEEeCC-----CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCcEEEee
Q 006424          300 YLLSCSMD-----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWA  366 (645)
Q Consensus       300 ~l~s~s~d-----g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~  366 (645)
                      .++.||.+     ..+..||..+++-...-.  ....-.+++..  ++.+++.|+.+      ..+..||..+++-....
T Consensus       345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~  422 (534)
T PHA03098        345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS  422 (534)
T ss_pred             EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence            55666654     357778887665432211  11111122222  57777777732      35889998876654432


Q ss_pred             ccCCC--eEEEEEccCCCEEEEEecC--------CeEEEEEecCCcee
Q 006424          367 DVRDV--ISAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLK  404 (645)
Q Consensus       367 ~~~~~--v~~l~~sp~g~~l~~g~~d--------g~i~iwd~~~~~~~  404 (645)
                      ....+  -.++ ...++..++.|+.+        ..+..||..+....
T Consensus       423 ~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~  469 (534)
T PHA03098        423 PLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT  469 (534)
T ss_pred             CCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence            22111  1122 22356666666543        23788888776553

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.73  E-value=33  Score=38.68  Aligned_cols=72  Identities=11%  Similarity=0.178  Sum_probs=47.5

Q ss_pred             ccCeEEEEEcCCC-eEEEEeCCCcEEEEecC----------CCeE--E-EEe---------cCCCcEEEEEEeeC--CCC
Q 006424          287 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG----------CNQC--L-NVF---------DHHNYVTCVQFNPI--DDN  341 (645)
Q Consensus       287 ~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~----------~~~~--~-~~~---------~~~~~v~~l~~~p~--~~~  341 (645)
                      ...|..+..+++| .++-.|..| |.|-.+.          .|+.  . +++         .....|..+.|+|.  ++.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            4578889999998 555555544 4444331          1111  1 111         23457899999994  257


Q ss_pred             EEEEEeCCCcEEEEeCCC
Q 006424          342 YFISGSIDGKVRIWGVCE  359 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~~~  359 (645)
                      .|++-..|+++++||+..
T Consensus       163 ~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             eEEEEecCCEEEEEecCC
Confidence            888888999999999965

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.61  E-value=14  Score=34.23  Aligned_cols=144  Identities=10%  Similarity=0.066  Sum_probs=78.0

Q ss_pred             CEEEEEeCCCcEEEEeCCC--CcEEEeeccCCCeEEEEEccCCCEEEEEecC---C---eEEEEE---ec-CCceeeeEE
Q 006424          341 NYFISGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSIT---G---TCHFYK---AS-GNDLKLEKV  408 (645)
Q Consensus       341 ~~l~s~s~dg~i~vwd~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d---g---~i~iwd---~~-~~~~~~~~~  408 (645)
                      +.|+.+...+.|.+|++.+  .+.......-+.|..+.++..|+++++--.+   .   .+++|-   .. ....+.. .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~-v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR-V  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE-E
Confidence            5555556668899999984  3344455556889999999999999986432   2   556652   21 1111111 1


Q ss_pred             eeccc-----------------cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee-----eEee-------cC
Q 006424          409 DFHDR-----------------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----KFKG-------LP  459 (645)
Q Consensus       409 ~~~~~-----------------~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-----~~~~-------~~  459 (645)
                      ..-++                 ......++.+++..|-.++ |+.|+ ++.+.+|.+.....     .+-.       +.
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~  185 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI  185 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence            11110                 0001246678888886433 44444 45788887542221     0111       11


Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          460 KSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       460 ~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      ..-....+++  -+.|+|..+ +-.+++..+
T Consensus       186 ~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  186 DNFKPTQVAI--CEGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             cCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence            1222445555  366787775 556666654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=90.52  E-value=18  Score=35.36  Aligned_cols=203  Identities=12%  Similarity=0.139  Sum_probs=110.7

Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEecC------CCeE-EEEec------CCCcEEEEEEeeCCCC------------E
Q 006424          289 DVLDLAWSNSN-YLLSCSMDKTVRMWQVG------CNQC-LNVFD------HHNYVTCVQFNPIDDN------------Y  342 (645)
Q Consensus       289 ~V~~l~~s~~~-~l~s~s~dg~I~iwd~~------~~~~-~~~~~------~~~~v~~l~~~p~~~~------------~  342 (645)
                      .-+.|+++|.+ .-++....+...+||..      ..+. +-.+.      .....+.+.|+. ...            .
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence            45788999987 55566667889999986      1222 22221      234677888875 222            3


Q ss_pred             EEEEeCCCcEEEEeCCCC------cEEEeecc-CCCe-EEEEEcc--CCCEEEEE-ecCCeEEEEEecCCceeeeEEeec
Q 006424          343 FISGSIDGKVRIWGVCEK------RVVDWADV-RDVI-SAICYIP--DGKGFIVG-SITGTCHFYKASGNDLKLEKVDFH  411 (645)
Q Consensus       343 l~s~s~dg~i~vwd~~~~------~~~~~~~~-~~~v-~~l~~sp--~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~  411 (645)
                      ++.+++||+|.-|...-.      ..+.+... ...| ..+++..  .+.+|+.+ -..++|.+||-.-...... -.+.
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~  181 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFI  181 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCcc
Confidence            677889999999985322      22222211 2333 3445443  34555554 4578888887653322110 0011


Q ss_pred             cccccCCCCeEEEE------------EcCCCCcEEEEEECCCeEEEEECC-cceeeEeecCCCCCeEEEEEec------C
Q 006424          412 DRKKTSGNKITGIQ------------FSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTT------T  472 (645)
Q Consensus       412 ~~~~~~~~~i~~i~------------~s~~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp------~  472 (645)
                      .........-..|+            -.++. ..=+.+..-|.|.+||.. +.++++.....-...+.|+..|      .
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence            00000001111111            11111 112223334789999976 5555565544455567777755      4


Q ss_pred             CCEEEEEeCCccEEEEeCCCCC
Q 006424          473 GKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       473 ~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      +.+|+--=.||+|..||..++.
T Consensus       261 g~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             CCeEEeecCCceeEEecCCCCc
Confidence            5666665569999999998775

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=90.42  E-value=37  Score=38.66  Aligned_cols=156  Identities=11%  Similarity=0.080  Sum_probs=87.7

Q ss_pred             cEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE
Q 006424          329 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV  408 (645)
Q Consensus       329 ~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~  408 (645)
                      ....+..+-..++.|+-... ..|++++-. +....+... ..++....+.+...+++++.++.+...++........ .
T Consensus       450 ~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~-~  525 (1096)
T KOG1897|consen  450 DEQTIFCSTINGNQLVQVTS-NSIRLVSSA-GLRSEWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREV-S  525 (1096)
T ss_pred             cCceEEEEccCCceEEEEec-ccEEEEcch-hhhhcccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccceeee-e
Confidence            33444444434555444432 457887755 333333333 3334444445556788888778877777765552111 1


Q ss_pred             eeccccccCCCCeEEEEEcCC--CCc---EEEEEECCCeEEEEECC-cc-eee---EeecCCCCCeEEEEEecCCCEEEE
Q 006424          409 DFHDRKKTSGNKITGIQFSRD--ESQ---RIMITSEDSKLRILDGV-DV-IHK---FKGLPKSGSQMSASFTTTGKHIIS  478 (645)
Q Consensus       409 ~~~~~~~~~~~~i~~i~~s~~--g~~---~l~~~s~dg~I~iwd~~-~~-~~~---~~~~~~~~~i~~v~~sp~~~~l~t  478 (645)
                           ...-...|.|+.++|-  +++   +++.|..+..+.+.-.- +. ...   +.+..-...|.-..|-.|..+|.+
T Consensus       526 -----~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlv  600 (1096)
T KOG1897|consen  526 -----HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLV  600 (1096)
T ss_pred             -----eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEE
Confidence                 1111367899999875  333   88889888766655322 11 111   111112234555566667889999


Q ss_pred             EeCCccEEEEeCCCC
Q 006424          479 IGDDCRVYVWNYDEL  493 (645)
Q Consensus       479 ~s~dg~I~iwd~~~~  493 (645)
                      +..||.+.-|.++..
T Consensus       601 algdG~l~~fv~d~~  615 (1096)
T KOG1897|consen  601 ALGDGALLYFVLDIN  615 (1096)
T ss_pred             EcCCceEEEEEEEcc
Confidence            999999887766544

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.12  E-value=11  Score=41.74  Aligned_cols=119  Identities=10%  Similarity=0.110  Sum_probs=72.8

Q ss_pred             CeEEEEEcc--CCCEEEEEecCCeEEEEEecCCce-------eee----EEeecc-ccccCCCCeEEEEEc--CCCCcEE
Q 006424          371 VISAICYIP--DGKGFIVGSITGTCHFYKASGNDL-------KLE----KVDFHD-RKKTSGNKITGIQFS--RDESQRI  434 (645)
Q Consensus       371 ~v~~l~~sp--~g~~l~~g~~dg~i~iwd~~~~~~-------~~~----~~~~~~-~~~~~~~~i~~i~~s--~~g~~~l  434 (645)
                      .|+.|....  +...|+++..||.|.+|.++.-..       ...    ...... -....+..+.+++++  ... +++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEE
Confidence            355555443  445888999999999997631100       000    000000 001123577888887  553 788


Q ss_pred             EEEECCCeEEEEECCc---ceeeEeecCCCCCeEEEEEecCC---C---EEEEEeCCccEEEEeC
Q 006424          435 MITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTG---K---HIISIGDDCRVYVWNY  490 (645)
Q Consensus       435 ~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~i~~v~~sp~~---~---~l~t~s~dg~I~iwd~  490 (645)
                      |+++....|.||-...   .......+.+...|-+++|-++.   .   .|++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888888888886432   11111123366788899996643   2   7888889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.63  E-value=21  Score=34.68  Aligned_cols=194  Identities=12%  Similarity=0.112  Sum_probs=115.0

Q ss_pred             ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEE---ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE
Q 006424          287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  363 (645)
Q Consensus       287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~  363 (645)
                      .+-+..+.++. .+.+.+..+.-++|.|+.+...-..   +...+.-.++..   .|++..++..|.-+.+.|+.+...-
T Consensus        86 ~~l~~Dv~vse-~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          86 RDLFADVRVSE-EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhhheeEecc-cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCc
Confidence            34455556653 4666777778899999976544333   333355566655   6889999887777888998764422


Q ss_pred             E---ee-ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424          364 D---WA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  439 (645)
Q Consensus       364 ~---~~-~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~  439 (645)
                      .   .. .....-..++.  .|++-.++..|+-+.+.|+.+...+...-....     +..+.++..+++-  -+++ -.
T Consensus       162 ~lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~-----g~g~~sv~vsdnr--~y~v-vy  231 (370)
T COG5276         162 QLAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT-----GPGTYSVSVSDNR--AYLV-VY  231 (370)
T ss_pred             eeeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEec-----CCceEEEEecCCe--eEEE-Ec
Confidence            2   21 22222344554  477888889999999999988776554332222     2367777777762  3333 33


Q ss_pred             CCeEEEEECCcce--eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          440 DSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       440 dg~I~iwd~~~~~--~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      +--+.+-|.....  ..+-......++..-.+.-.+++......+.-+-+-|+.+..
T Consensus       232 ~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~  288 (370)
T COG5276         232 DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP  288 (370)
T ss_pred             ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence            3446666655433  222222222222221333356677776667777777877654

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.44  E-value=0.2  Score=54.85  Aligned_cols=116  Identities=17%  Similarity=0.257  Sum_probs=72.3

Q ss_pred             eeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecC--CCeEEEEe-----c-CCCcEEEEEEeeC--CCCEEEEEeCC
Q 006424          282 ELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVG--CNQCLNVF-----D-HHNYVTCVQFNPI--DDNYFISGSID  349 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~--~~~~~~~~-----~-~~~~v~~l~~~p~--~~~~l~s~s~d  349 (645)
                      .++|..+.|-.+.|...+  .+.  -.-|.+.|||++  .|+....+     . ....+.-+.|.|.  +.-++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            355778888888885422  222  333678899875  34332222     1 2334455555541  44566677778


Q ss_pred             CcEEEEeCCCCcEEEeeccCCCeEEE-----------EEccCCCEEEEEecCCeEEEEEec
Q 006424          350 GKVRIWGVCEKRVVDWADVRDVISAI-----------CYIPDGKGFIVGSITGTCHFYKAS  399 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~~~~~v~~l-----------~~sp~g~~l~~g~~dg~i~iwd~~  399 (645)
                      +++++.........-+.+|...+..+           ..+|||..++.++.||.+++|.+.
T Consensus       205 ~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  205 GEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             CceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            88888877654433233354443332           368999999999999999999875

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.06  E-value=4.6  Score=41.88  Aligned_cols=138  Identities=17%  Similarity=0.235  Sum_probs=84.2

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeC-------CCCEEEEEeCCCcEEEEeCCC-CcEEEeeccCCC
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-------DDNYFISGSIDGKVRIWGVCE-KRVVDWADVRDV  371 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~-------~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~  371 (645)
                      .+..|+....++--|++.|+.+........| -+.|.|.       +.+.|+ |-.+..|.-.|.+- +..+........
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY  559 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDY  559 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhc
Confidence            4456777778888899999999988866656 6777771       223344 44455566566553 322222222223


Q ss_pred             eEEEEEcc----CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424          372 ISAICYIP----DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  447 (645)
Q Consensus       372 v~~l~~sp----~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd  447 (645)
                      .+.-.|+.    ...++|+|+..|.|++||--+......   +    +..+..|..+..+.+| .++++.+. ..+-+-|
T Consensus       560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKta---l----P~lG~aIk~idvta~G-k~ilaTCk-~yllL~d  630 (776)
T COG5167         560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTA---L----PGLGDAIKHIDVTANG-KHILATCK-NYLLLTD  630 (776)
T ss_pred             cccccccccccccCceEEEecCCCceeeehhhcchhhhc---C----cccccceeeeEeecCC-cEEEEeec-ceEEEEe
Confidence            33223332    344999999999999999755443222   1    1224678899999998 55555543 3565666


Q ss_pred             C
Q 006424          448 G  448 (645)
Q Consensus       448 ~  448 (645)
                      +
T Consensus       631 ~  631 (776)
T COG5167         631 V  631 (776)
T ss_pred             c
Confidence            4

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.65  E-value=2  Score=40.59  Aligned_cols=71  Identities=13%  Similarity=0.084  Sum_probs=48.3

Q ss_pred             EccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc-------cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424          377 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-------TSGNKITGIQFSRDESQRIMITSEDSKLRILDGV  449 (645)
Q Consensus       377 ~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~  449 (645)
                      +..++.++++-+.+|.+++||+.+.+.......+.....       .....|..+.++.+| .-+++-+ +|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEeccc
Confidence            445788999999999999999998776544322211111       245678888888887 4455444 5778888743

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA02790 Kelch-like protein; Provisional

Probab=88.58  E-value=25  Score=37.81  Aligned_cols=102  Identities=14%  Similarity=0.130  Sum_probs=53.6

Q ss_pred             CC-eEEEEeCC--CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCC---cEEEEeCCCCcEEEeeccC
Q 006424          298 SN-YLLSCSMD--KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVR  369 (645)
Q Consensus       298 ~~-~l~s~s~d--g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~  369 (645)
                      ++ ..+.|+.+  .++..||..+++-...-.  ....-.+++..  ++.+.+.|+.++   .+..||.++.+-.......
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~  395 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY  395 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence            34 45566653  457888876654433222  11111122222  678888887653   4778888776654432221


Q ss_pred             CCeE-EEEEccCCCEEEEEecCCeEEEEEecCCcee
Q 006424          370 DVIS-AICYIPDGKGFIVGSITGTCHFYKASGNDLK  404 (645)
Q Consensus       370 ~~v~-~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~  404 (645)
                      .+.. .....-+|+..+.|   |.+.+||..+....
T Consensus       396 ~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~  428 (480)
T PHA02790        396 YPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWT  428 (480)
T ss_pred             CccccceEEEECCEEEEEC---CceEEecCCCCcEe
Confidence            1111 11122356666665   45778888776553

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.79  E-value=4.6  Score=38.16  Aligned_cols=72  Identities=13%  Similarity=0.196  Sum_probs=49.5

Q ss_pred             CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe-------e--------ccCCCeEEEEEccCCCEEEEEecCC
Q 006424          327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-------A--------DVRDVISAICYIPDGKGFIVGSITG  391 (645)
Q Consensus       327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~--------~~~~~v~~l~~sp~g~~l~~g~~dg  391 (645)
                      ..++..+..   .++++++.+.+|.+++||+.+++....       .        .....|..+.++.+|.-+++- .+|
T Consensus        12 gs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng   87 (219)
T PF07569_consen   12 GSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNG   87 (219)
T ss_pred             CCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCC
Confidence            344444443   678899999999999999998775431       1        344567788888777665544 457


Q ss_pred             eEEEEEecCCc
Q 006424          392 TCHFYKASGND  402 (645)
Q Consensus       392 ~i~iwd~~~~~  402 (645)
                      ..+.|+..-..
T Consensus        88 ~~y~y~~~L~~   98 (219)
T PF07569_consen   88 DSYSYSPDLGC   98 (219)
T ss_pred             CEEEeccccce
Confidence            77888766443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=87.77  E-value=33  Score=36.59  Aligned_cols=149  Identities=13%  Similarity=0.218  Sum_probs=79.2

Q ss_pred             ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE
Q 006424          287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  364 (645)
Q Consensus       287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~  364 (645)
                      ..+|..+.+.-.|.+..|+.|| +..||..+++.++.-.  ....|..+.-+-  ...+.+|+.+| +++.+.++.+...
T Consensus       164 d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~--qg~LWVGTdqG-v~~~e~~G~~~sn  239 (671)
T COG3292         164 DTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADV--QGRLWVGTDQG-VYLQEAEGWRASN  239 (671)
T ss_pred             CccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHh--cCcEEEEeccc-eEEEchhhccccc
Confidence            4678888888788888888887 5667777777766543  224566655543  34567777665 7888877633322


Q ss_pred             ee--ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCe
Q 006424          365 WA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK  442 (645)
Q Consensus       365 ~~--~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~  442 (645)
                      ..  -....|..+.-..+| .+..|+..|..+. ..............+    ...+.|.++....+|  -+-+++.++.
T Consensus       240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~----l~~S~vnsL~~D~dG--sLWv~t~~gi  311 (671)
T COG3292         240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMH----LGVSTVNSLWLDTDG--SLWVGTYGGI  311 (671)
T ss_pred             cCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccC----CccccccceeeccCC--CEeeeccCce
Confidence            11  112233333323333 5666666654432 222121111111111    012455566666665  3556666665


Q ss_pred             EEEEE
Q 006424          443 LRILD  447 (645)
Q Consensus       443 I~iwd  447 (645)
                      +++-+
T Consensus       312 v~~~~  316 (671)
T COG3292         312 VRYLT  316 (671)
T ss_pred             EEEec
Confidence            55543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.67  E-value=13  Score=37.87  Aligned_cols=110  Identities=17%  Similarity=0.264  Sum_probs=57.2

Q ss_pred             CeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC---CCcEEEEEECC------C
Q 006424          371 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD---ESQRIMITSED------S  441 (645)
Q Consensus       371 ~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~---g~~~l~~~s~d------g  441 (645)
                      ..++|+|.|+|+.++ +...|.|.+++ .........................++++|+   +..+.++.+..      .
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            467899999987655 56699999999 3333211111111222223467889999994   21344443321      2


Q ss_pred             --eEEEEECCc-------ceeeEee----cCCCCCeEEEEEecCCCEEEEEeCC
Q 006424          442 --KLRILDGVD-------VIHKFKG----LPKSGSQMSASFTTTGKHIISIGDD  482 (645)
Q Consensus       442 --~I~iwd~~~-------~~~~~~~----~~~~~~i~~v~~sp~~~~l~t~s~d  482 (645)
                        .|.-|....       ....+..    .........+.|.|||.+.++.++.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence              333332211       1111111    1234456779999999877776654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=87.62  E-value=34  Score=34.56  Aligned_cols=104  Identities=9%  Similarity=0.146  Sum_probs=55.2

Q ss_pred             CCeEEEEeCC-----CcEEEEecCCCeE---EEEec---CCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCc
Q 006424          298 SNYLLSCSMD-----KTVRMWQVGCNQC---LNVFD---HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKR  361 (645)
Q Consensus       298 ~~~l~s~s~d-----g~I~iwd~~~~~~---~~~~~---~~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~  361 (645)
                      +..++.|+.+     ..+..+|+.+.+.   .....   ....-.+++..  ++.+++.|+..     ..+..||+.+.+
T Consensus        73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            3455666654     3566777766553   12221   11111222232  56777777642     358889988776


Q ss_pred             EEEeeccC--CCeEEEEEccCCCEEEEEecCC----eEEEEEecCCce
Q 006424          362 VVDWADVR--DVISAICYIPDGKGFIVGSITG----TCHFYKASGNDL  403 (645)
Q Consensus       362 ~~~~~~~~--~~v~~l~~sp~g~~l~~g~~dg----~i~iwd~~~~~~  403 (645)
                      -.......  ......+...+++..+.|+.++    .+..||..+...
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            55443211  1222233334677777777654    346788877654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=86.62  E-value=44  Score=37.07  Aligned_cols=95  Identities=9%  Similarity=0.093  Sum_probs=51.7

Q ss_pred             eEEEEEccCCCEEEEEecCC-----eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424          372 ISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  446 (645)
Q Consensus       372 v~~l~~sp~g~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw  446 (645)
                      -..++|-|+|..+++-..||     .+.++..++-..---...     ......+...+|+-..  .+......+.+++|
T Consensus       249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-----~~~dEk~~~~~wn~~s--~vlav~~~n~~~lw  321 (1243)
T COG5290         249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-----VGCDEKAFLENWNLLS--TVLAVAEGNLLKLW  321 (1243)
T ss_pred             hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-----CCchhhhhhhhhhHHH--HHHHHhhcceEEEE
Confidence            34588999999999876555     355554433221100000     0112345566776652  34455567789999


Q ss_pred             ECCcceeeEeecCCCCCeEEEEEecCC
Q 006424          447 DGVDVIHKFKGLPKSGSQMSASFTTTG  473 (645)
Q Consensus       447 d~~~~~~~~~~~~~~~~i~~v~~sp~~  473 (645)
                      -..+..--++....-..+.-+.|+|..
T Consensus       322 ttkNyhWYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         322 TTKNYHWYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             EccceEEEEEEeecCCCcceeeecccc
Confidence            866533333322233345567777754

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=86.56  E-value=9  Score=39.87  Aligned_cols=46  Identities=22%  Similarity=0.129  Sum_probs=38.5

Q ss_pred             cccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 006424          188 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA  233 (645)
Q Consensus       188 ~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~  233 (645)
                      .++.....|......+.+++.+|++++.|+...=|.|.++|+.++.
T Consensus       295 ~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~  340 (415)
T PF14655_consen  295 APLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI  340 (415)
T ss_pred             cccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence            4455666788888899999999999999988888999999998753

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.49  E-value=16  Score=38.27  Aligned_cols=85  Identities=11%  Similarity=0.167  Sum_probs=53.8

Q ss_pred             CeEEEEEccCCCEEEEEecCCeEEEEEec---------CCceeee--EEeecccccc--CCCCeEEEEEcCCC--CcEEE
Q 006424          371 VISAICYIPDGKGFIVGSITGTCHFYKAS---------GNDLKLE--KVDFHDRKKT--SGNKITGIQFSRDE--SQRIM  435 (645)
Q Consensus       371 ~v~~l~~sp~g~~l~~g~~dg~i~iwd~~---------~~~~~~~--~~~~~~~~~~--~~~~i~~i~~s~~g--~~~l~  435 (645)
                      .|..+..++.|..++..+.+|.+.++=.+         .++..+.  .+........  ..-.+..++|+|+.  ...+.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            47788899999999999999987665421         2211111  1111111100  11345567899974  46888


Q ss_pred             EEECCCeEEEEECCcceeeE
Q 006424          436 ITSEDSKLRILDGVDVIHKF  455 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~~~~~~  455 (645)
                      .-+.|+.|++||.......+
T Consensus       185 iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             EEecCcEEEEEecCCcchhh
Confidence            89999999999987655444

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.48  E-value=18  Score=37.26  Aligned_cols=108  Identities=15%  Similarity=0.170  Sum_probs=67.4

Q ss_pred             ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424          367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  446 (645)
Q Consensus       367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw  446 (645)
                      ..+++|.++.|++|.+.+|+--.+..|.+++....+....   ...........|....|+.+  .-++.-+..| +.+|
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~---~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~y  137 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE---YTQECKTKNANILGFCWTSS--TEIAFITDQG-IEFY  137 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH---HHHHhccCcceeEEEEEecC--eeEEEEecCC-eEEE
Confidence            3456899999999999999999999999999855443322   11111222356889999887  3455544433 5555


Q ss_pred             ECCcceeeEee-cCCCCCeEEEEEecCCCEEEEEe
Q 006424          447 DGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       447 d~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      ........++. ..+...|.-..|.++.+.+.-++
T Consensus       138 ~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  138 QVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             EEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            53322222221 23566777778888777654443

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=85.58  E-value=37  Score=33.05  Aligned_cols=160  Identities=13%  Similarity=0.150  Sum_probs=102.6

Q ss_pred             EEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE---eeccCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006424          321 LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYK  397 (645)
Q Consensus       321 ~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd  397 (645)
                      +......+.+..+.++   +++...+..+.-+++.|+.+...-+   .....+.-.++  .-.|++..++.-+.-+.++|
T Consensus        80 ~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddgfLivd  154 (370)
T COG5276          80 LSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDGFLIVD  154 (370)
T ss_pred             EEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCcEEEEE
Confidence            3334455667778884   5788888888889999998754322   33333334444  44688999998777788899


Q ss_pred             ecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-eeeEeecCCCC-CeEEEEEecCCCE
Q 006424          398 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSG-SQMSASFTTTGKH  475 (645)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~-~i~~v~~sp~~~~  475 (645)
                      +.+...+...-.....    ...-..++.|-   ++-..+..|+-+.+.|+..+ ...+.++-..+ .+.++..+++..+
T Consensus       155 vsdpssP~lagrya~~----~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y  227 (370)
T COG5276         155 VSDPSSPQLAGRYALP----GGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAY  227 (370)
T ss_pred             CCCCCCceeeeeeccC----CCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeE
Confidence            9887766543322221    22234555553   46777888999999998743 33444444444 6778877777666


Q ss_pred             EEEEeCCccEEEEeCCCCC
Q 006424          476 IISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       476 l~t~s~dg~I~iwd~~~~~  494 (645)
                      ++..  +--+.+-|..+..
T Consensus       228 ~vvy--~egvlivd~s~~s  244 (370)
T COG5276         228 LVVY--DEGVLIVDVSGPS  244 (370)
T ss_pred             EEEc--ccceEEEecCCCC
Confidence            6654  3346666776654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.53  E-value=53  Score=34.77  Aligned_cols=53  Identities=15%  Similarity=0.167  Sum_probs=36.4

Q ss_pred             CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe-------e-ccCCCeEEEEEccCC
Q 006424          328 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-------A-DVRDVISAICYIPDG  381 (645)
Q Consensus       328 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~-~~~~~v~~l~~sp~g  381 (645)
                      ...+.|+|.| ++++|++--..|.|++++..++.....       . ........|+++|+-
T Consensus        30 ~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            4578899999 887776655469999998655432211       1 135678899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=85.43  E-value=33  Score=32.25  Aligned_cols=186  Identities=12%  Similarity=0.058  Sum_probs=98.9

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCC---CEEEEEeCCCcEEEEeCCCCc--EEE----e--ecc
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD---NYFISGSIDGKVRIWGVCEKR--VVD----W--ADV  368 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~---~~l~s~s~dg~i~vwd~~~~~--~~~----~--~~~  368 (645)
                      ++..-=..|.|.-||+.+++..+.--...++.++.+ |..+   .+.+.++..-.|.-||.....  +..    .  ...
T Consensus        29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k  107 (310)
T KOG4499|consen   29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK  107 (310)
T ss_pred             EEEEEeccCceehhhhhhhheEEEEEecCcceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence            444444557777799887665443211122223333 2122   233333333335556633221  111    1  112


Q ss_pred             CCCeEEEEEccCCCEEEEEec----------CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424          369 RDVISAICYIPDGKGFIVGSI----------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  438 (645)
Q Consensus       369 ~~~v~~l~~sp~g~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s  438 (645)
                      ....+.-..+|+|+++ .|..          .|.++.|-....-...  ...       -.--+.++|+.+...+.++-+
T Consensus       108 knR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h~v~~i--~~~-------v~IsNgl~Wd~d~K~fY~iDs  177 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGHQVELI--WNC-------VGISNGLAWDSDAKKFYYIDS  177 (310)
T ss_pred             hcccccCccCCCCcee-eeeeccccccccccccEEEEeccCCCceee--ehh-------ccCCccccccccCcEEEEEcc
Confidence            3456666788999984 4432          2344444433221111  000       123356889988767777888


Q ss_pred             CCCeEEEEECC-------cceeeEeecC----CCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424          439 EDSKLRILDGV-------DVIHKFKGLP----KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  496 (645)
Q Consensus       439 ~dg~I~iwd~~-------~~~~~~~~~~----~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~  496 (645)
                      .+-.|.-||..       +....+....    ..-..-.++++.+|++.+++-+.|+|...|..+++..
T Consensus       178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L  246 (310)
T KOG4499|consen  178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKIL  246 (310)
T ss_pred             CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEE
Confidence            88899888822       2222232211    1112235666778888888888999999999998643

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.90  E-value=10  Score=44.31  Aligned_cols=165  Identities=13%  Similarity=0.236  Sum_probs=93.0

Q ss_pred             ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CcEEEeeccCCCeEEEE--------EccCCCEEEEEecCCeEE
Q 006424          324 FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWADVRDVISAIC--------YIPDGKGFIVGSITGTCH  394 (645)
Q Consensus       324 ~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~v~~l~--------~sp~g~~l~~g~~dg~i~  394 (645)
                      +.|...-..+-+.|.=+..-++  .|..+.+|+..+ +....+.+....|..+.        |-|.=+++++-+.--.|.
T Consensus        75 ~~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~  152 (1311)
T KOG1900|consen   75 FSNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIV  152 (1311)
T ss_pred             hcCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEE
Confidence            3333333344444523333333  578899999987 55555666666666554        333445555555555666


Q ss_pred             EEEecCCceeeeEEeecc--ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE--ECC------cc-------------
Q 006424          395 FYKASGNDLKLEKVDFHD--RKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGV------DV-------------  451 (645)
Q Consensus       395 iwd~~~~~~~~~~~~~~~--~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw--d~~------~~-------------  451 (645)
                      ++-+.-.........+..  .....+..|+|+....+|  .++.++.||.|+-.  ...      .+             
T Consensus       153 ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG--RIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~l  230 (1311)
T KOG1900|consen  153 ILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENG--RIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSL  230 (1311)
T ss_pred             EEEEEeccccCcccccccceeeecCCceEEEEEeccCC--cEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHh
Confidence            665432222111000000  011124678999988887  45555666644321  111      00             


Q ss_pred             eee-Eeec-CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          452 IHK-FKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       452 ~~~-~~~~-~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      ... +... .+..+|..+..+...+.+.+-+..|+|.+||+..
T Consensus       231 vPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  231 VPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            000 1111 3567999999999999999999999999999976

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=84.80  E-value=50  Score=33.89  Aligned_cols=140  Identities=14%  Similarity=0.164  Sum_probs=80.5

Q ss_pred             CcEEEEecC--CCeEEEEec--------CCCcEEEEEEe--eCCCC-EEEEEeCCCcEEEEeCC---CC----cEEEeec
Q 006424          308 KTVRMWQVG--CNQCLNVFD--------HHNYVTCVQFN--PIDDN-YFISGSIDGKVRIWGVC---EK----RVVDWAD  367 (645)
Q Consensus       308 g~I~iwd~~--~~~~~~~~~--------~~~~v~~l~~~--p~~~~-~l~s~s~dg~i~vwd~~---~~----~~~~~~~  367 (645)
                      .+|++|.+.  ++.. ..+.        ....++.+|+.  |.++. +.++...+|.+..|.+.   .+    +.++...
T Consensus       127 n~l~~f~id~~~g~L-~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~  205 (381)
T PF02333_consen  127 NSLRLFRIDPDTGEL-TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK  205 (381)
T ss_dssp             -EEEEEEEETTTTEE-EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred             CeEEEEEecCCCCcc-eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence            469999775  3433 2221        11246667764  43444 56667788988888764   23    3455566


Q ss_pred             cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-EEeeccccccCCCCeEEEEEc--CCCCcEEEEEEC-CCeE
Q 006424          368 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFS--RDESQRIMITSE-DSKL  443 (645)
Q Consensus       368 ~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~s--~~g~~~l~~~s~-dg~I  443 (645)
                      ....+..+........|+++-++.-|.-|+......... .+.... .......+-.+++.  .++..+|++++. +++.
T Consensus       206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf  284 (381)
T PF02333_consen  206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF  284 (381)
T ss_dssp             -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred             CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccc-ccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence            677889999998888999999998888888764332211 121111 11123556677764  344345555554 6789


Q ss_pred             EEEECC
Q 006424          444 RILDGV  449 (645)
Q Consensus       444 ~iwd~~  449 (645)
                      .||+..
T Consensus       285 ~Vy~r~  290 (381)
T PF02333_consen  285 AVYDRE  290 (381)
T ss_dssp             EEEESS
T ss_pred             EEEecC
Confidence            999965

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=84.28  E-value=37  Score=31.91  Aligned_cols=169  Identities=14%  Similarity=0.194  Sum_probs=90.7

Q ss_pred             CeEEEEeCCCcEEEEecC--CCeEEEEe------cCCCcEEEEEEeeCCCCEEEEEeCC---------CcEEEEeCCCCc
Q 006424          299 NYLLSCSMDKTVRMWQVG--CNQCLNVF------DHHNYVTCVQFNPIDDNYFISGSID---------GKVRIWGVCEKR  361 (645)
Q Consensus       299 ~~l~s~s~dg~I~iwd~~--~~~~~~~~------~~~~~v~~l~~~p~~~~~l~s~s~d---------g~i~vwd~~~~~  361 (645)
                      .+.+.++..-.|.-||..  .-....++      ......+.-..+| +|++++-.-.|         |.++.|-.. .+
T Consensus        72 ~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~  149 (310)
T KOG4499|consen   72 EFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG-HQ  149 (310)
T ss_pred             eEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCC-CCceeeeeeccccccccccccEEEEeccC-CC
Confidence            455566665566667743  22333332      1234566667788 88874322222         334444332 22


Q ss_pred             EEEeeccCCCeEEEEEccCCCEEEEE-ecCCeEEEEE--ecCCceeee--EEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          362 VVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYK--ASGNDLKLE--KVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       362 ~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd--~~~~~~~~~--~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      +......-.--+.++|+.+.+.+..- +.+-.|.-||  ..++.....  .+.+........-..-.++...+| .+.++
T Consensus       150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va  228 (310)
T KOG4499|consen  150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVA  228 (310)
T ss_pred             ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEE
Confidence            22222223344678888877766554 4556776677  444443222  122221111111112234455566 77888


Q ss_pred             EECCCeEEEEECCcceeeEeecCCCCCeEEEEEe
Q 006424          437 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFT  470 (645)
Q Consensus       437 ~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~s  470 (645)
                      .-..++|...|..+........-....|++++|.
T Consensus       229 ~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  229 TFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             EecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            8888999999977654444444467889999995

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.06  E-value=26  Score=36.11  Aligned_cols=106  Identities=14%  Similarity=0.180  Sum_probs=63.3

Q ss_pred             CCCEEEEEecCCeEEEEEecCCceee-eEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cce--ee
Q 006424          380 DGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVI--HK  454 (645)
Q Consensus       380 ~g~~l~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~--~~  454 (645)
                      |.+..+.+...|.+.=|-.+...... ..+....     .++|.++.|++|+ +.+++--.|..|.+++..  +..  ..
T Consensus        32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d-----~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~  105 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDD-----KGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYT  105 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCCCCCCceeeecC-----CCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHH
Confidence            33334444445555556555433211 1222222     3699999999997 899999999999999853  111  11


Q ss_pred             EeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          455 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       455 ~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .........|.+..|+.+ .-+|..++. -+-+|-+...
T Consensus       106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pe  142 (657)
T KOG2377|consen  106 QECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPE  142 (657)
T ss_pred             HHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchh
Confidence            122224556899999876 455555543 3666766554

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=83.08  E-value=56  Score=33.08  Aligned_cols=147  Identities=17%  Similarity=0.246  Sum_probs=81.4

Q ss_pred             CcEEEEEEeeCCCCEEEEEeCCCc------EEEEeCCC--C---cE-----EEeeccCC--------CeEEEEEccCCCE
Q 006424          328 NYVTCVQFNPIDDNYFISGSIDGK------VRIWGVCE--K---RV-----VDWADVRD--------VISAICYIPDGKG  383 (645)
Q Consensus       328 ~~v~~l~~~p~~~~~l~s~s~dg~------i~vwd~~~--~---~~-----~~~~~~~~--------~v~~l~~sp~g~~  383 (645)
                      +....+.+.| ++..+++.+.+|.      +..+++..  +   .+     ..+....+        ..-+|++.++|.+
T Consensus        20 GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   20 GGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             CcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            4567788876 5556666677777      65555543  1   11     11111111        3347788677777


Q ss_pred             EEEEecC------CeEEEEEecCCceeeeEEeecc---------ccccCCCCeEEEEEcCCCCcEEEEEEC-----CC--
Q 006424          384 FIVGSIT------GTCHFYKASGNDLKLEKVDFHD---------RKKTSGNKITGIQFSRDESQRIMITSE-----DS--  441 (645)
Q Consensus       384 l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~i~~i~~s~~g~~~l~~~s~-----dg--  441 (645)
                      +++.-.+      ..|.-++... .. ...+..+.         ........+-+++++|+| +.|+++.+     |+  
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~G-~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLDG-RV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFAAMESPLKQDGPR  175 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCCC-cc-cceEccccccccccCccccccCCCCeEEEEECCCC-CEEEEEECccccCCCcc
Confidence            7666556      6777777663 22 22221111         122335678899999998 55555433     22  


Q ss_pred             -------eEEEE--ECCc---ceeeEeecC-------CCCCeEEEEEecCCCEEEE
Q 006424          442 -------KLRIL--DGVD---VIHKFKGLP-------KSGSQMSASFTTTGKHIIS  478 (645)
Q Consensus       442 -------~I~iw--d~~~---~~~~~~~~~-------~~~~i~~v~~sp~~~~l~t  478 (645)
                             .++++  |...   ....+....       ....+..+.+-+++++|+.
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                   14554  4332   123333321       3567888999999987765

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.23  E-value=21  Score=42.01  Aligned_cols=35  Identities=23%  Similarity=0.397  Sum_probs=28.5

Q ss_pred             cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCc
Q 006424          368 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGND  402 (645)
Q Consensus       368 ~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~  402 (645)
                      .......++|+|.-..++.|+..|.+++|-...-.
T Consensus        34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCCCCcceeeccccceEEEEEecccEEEecccceE
Confidence            34456778999999999999999999999765443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=81.56  E-value=32  Score=29.29  Aligned_cols=120  Identities=16%  Similarity=0.134  Sum_probs=73.3

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceee
Q 006424          204 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  283 (645)
Q Consensus       204 ~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  283 (645)
                      ..-.|.....-|++++.-|.|.|++..........                                     ....+..+
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-------------------------------------~~~~i~~L   44 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-------------------------------------QDSDISFL   44 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCcccccccc-------------------------------------ccCceeEE
Confidence            44567767778999999999999987652211000                                     01223333


Q ss_pred             ccCccCeEEEEEc---CC--C-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeC---CCCEEEEEeCCCcEEE
Q 006424          284 HGHKGDVLDLAWS---NS--N-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGSIDGKVRI  354 (645)
Q Consensus       284 ~~h~~~V~~l~~s---~~--~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~---~~~~l~s~s~dg~i~v  354 (645)
                      . -...|++++-.   |+  . .|+.|+. ..+..||++.+.-+..-...+.|+++.+-..   ...++++|+ +..|.-
T Consensus        45 N-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~G  121 (136)
T PF14781_consen   45 N-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQG  121 (136)
T ss_pred             E-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEE
Confidence            2 44566666543   22  2 5555554 6899999988877666566677888877431   233444444 677888


Q ss_pred             EeCCCCcEE
Q 006424          355 WGVCEKRVV  363 (645)
Q Consensus       355 wd~~~~~~~  363 (645)
                      ||....+..
T Consensus       122 fd~~G~e~f  130 (136)
T PF14781_consen  122 FDYEGNEIF  130 (136)
T ss_pred             eCCCCcEEE
Confidence            887665543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=81.35  E-value=65  Score=32.62  Aligned_cols=110  Identities=17%  Similarity=0.240  Sum_probs=61.3

Q ss_pred             CCeEEEEEccCCCEEEEEecCCe------EEEEEecCCcee---ee---EEeeccccc----cCCCCeEEEEEcCCCCcE
Q 006424          370 DVISAICYIPDGKGFIVGSITGT------CHFYKASGNDLK---LE---KVDFHDRKK----TSGNKITGIQFSRDESQR  433 (645)
Q Consensus       370 ~~v~~l~~sp~g~~l~~g~~dg~------i~iwd~~~~~~~---~~---~~~~~~~~~----~~~~~i~~i~~s~~g~~~  433 (645)
                      +.+..+.+.+++..+++.+.+|.      +..+++......   ..   ...+.....    ......-+|++.++| .+
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF   98 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence            45778888866666666676776      555555431111   11   111111100    001123367886665 66


Q ss_pred             EEEEECC------CeEEEEECC-cceeeE-------------eecCCCCCeEEEEEecCCCEEEEEe
Q 006424          434 IMITSED------SKLRILDGV-DVIHKF-------------KGLPKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       434 l~~~s~d------g~I~iwd~~-~~~~~~-------------~~~~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      +++.-.+      ..|+.++.. .....+             .........-+++++|+|+.|+++.
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            6666666      788888854 111222             2223456788999999999776654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=81.09  E-value=1.1e+02  Score=35.05  Aligned_cols=66  Identities=14%  Similarity=0.179  Sum_probs=45.4

Q ss_pred             CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEE-------------EEEEee-CCCCEEEEEeC----------CCcEEE
Q 006424          299 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT-------------CVQFNP-IDDNYFISGSI----------DGKVRI  354 (645)
Q Consensus       299 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~-------------~l~~~p-~~~~~l~s~s~----------dg~i~v  354 (645)
                      +.++.++.|+.+.-.|.++|+....+...+.|.             .+.-.| ..++.+++|+.          +|.|+-
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            478889999999999999999988776443331             011111 02345666643          688999


Q ss_pred             EeCCCCcEEE
Q 006424          355 WGVCEKRVVD  364 (645)
Q Consensus       355 wd~~~~~~~~  364 (645)
                      +|.++++++-
T Consensus       341 ~Da~TGkl~W  350 (764)
T TIGR03074       341 FDVNTGALVW  350 (764)
T ss_pred             EECCCCcEee
Confidence            9999998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=80.54  E-value=19  Score=39.27  Aligned_cols=73  Identities=12%  Similarity=0.292  Sum_probs=49.9

Q ss_pred             ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEec
Q 006424          324 FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS  399 (645)
Q Consensus       324 ~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~  399 (645)
                      ......++++.-+| .+..++.++.||.|++|+....+...+-....+-..+.|...|  +++.+.|..+.-|.-.
T Consensus        11 ~k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d   83 (1636)
T KOG3616|consen   11 PKEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKED   83 (1636)
T ss_pred             ccccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeecc
Confidence            33455678888899 8999999999999999998655443333333344455666555  6666667776666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	645
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-21
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-21
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-20
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-20
2h9l_A	329	Wdr5delta23 Length = 329		6e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-20
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-20
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		8e-20
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-19
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-19
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-19
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-14
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-11
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-10
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-09
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-07
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-07
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		6e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-07
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		6e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		7e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-06
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		8e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		8e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		4e-05
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-05
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		1e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-04

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 148/346 (42%), Gaps = 71/346 (20%)
Query: 151 KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP 210
           KK   E   ++   P+S   ++    VK N    ++FT       +  H   + ++KFSP
Sbjct: 8   KKPETEAARAQPT-PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSP 57
Query: 211 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 270
           +G +LAS   D +++IW              DG F                         
Sbjct: 58  NGEWLASSSADKLIKIWGAY-----------DGKFE------------------------ 82
Query: 271 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 328
                     + + GHK  + D+AWS +SN L+S S DKT+++W V   +CL     H N
Sbjct: 83  ----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 132
Query: 329 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVG 387
           YV C  FNP   N  +SGS D  VRIW V   + +       D +SA+ +  DG   +  
Sbjct: 133 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 191
Query: 388 SITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 446
           S  G C  +  ASG  LK    D           ++ ++FS +  + I+  + D+ L++ 
Sbjct: 192 SYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-GKYILAATLDNTLKLW 243
Query: 447 DGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWN 489
           D      +  + G       + A+F+ T GK I+S  +D  VY+WN
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 148/346 (42%), Gaps = 71/346 (20%)
Query: 151 KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP 210
           KK   E   ++   P+S   ++    VK N    ++FT       +  H   + ++KFSP
Sbjct: 6   KKPETEAARAQPT-PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSP 55
Query: 211 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 270
           +G +LAS   D +++IW              DG F                         
Sbjct: 56  NGEWLASSSADKLIKIWGAY-----------DGKFE------------------------ 80
Query: 271 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 328
                     + + GHK  + D+AWS +SN L+S S DKT+++W V   +CL     H N
Sbjct: 81  ----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 130
Query: 329 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVG 387
           YV C  FNP   N  +SGS D  VRIW V   + +       D +SA+ +  DG   +  
Sbjct: 131 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 189
Query: 388 SITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 446
           S  G C  +  ASG  LK    D           ++ ++FS +  + I+  + D+ L++ 
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-GKYILAATLDNTLKLW 241
Query: 447 DGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWN 489
           D      +  + G       + A+F+ T GK I+S  +D  VY+WN
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 67/304 (22%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 369
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G+C K +       
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTL---PAHS 152
Query: 370 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428
           D +SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS 
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSP 205
Query: 429 DESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRV 485
           +  + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  V
Sbjct: 206 N-GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 486 YVWN 489
           Y+WN
Sbjct: 265 YIWN 268

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 67/304 (22%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 369
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW    G+C K +       
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTL---PAHS 152
Query: 370 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 428
           D +SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS 
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSP 205
Query: 429 DESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRV 485
           +  + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  V
Sbjct: 206 N-GKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 486 YVWN 489
           Y+WN
Sbjct: 265 YIWN 268

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 65  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 372
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 373 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 432 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 488
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 489 N 489
           N
Sbjct: 271 N 271

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 58
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 59  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 372
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 94  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 373 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 204
Query: 432 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 488
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 489 N 489
           N
Sbjct: 265 N 265

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 65  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 372
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 373 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 432 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 488
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 489 N 489
           N
Sbjct: 271 N 271

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 75
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 76  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 110
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 372
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 111 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 169
Query: 373 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 170 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 221
Query: 432 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 488
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 222 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Query: 489 N 489
           N
Sbjct: 282 N 282

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 54
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 55  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 89
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 372
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 90  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 148
Query: 373 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 149 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 200
Query: 432 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 488
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 201 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 489 N 489
           N
Sbjct: 261 N 261

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 63
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 64  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 98
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 372
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 99  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 157
Query: 373 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 158 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 209
Query: 432 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 488
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 210 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Query: 489 N 489
           N
Sbjct: 270 N 270

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 58
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 59  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 372
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 94  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 373 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 204
Query: 432 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 488
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 489 N 489
           N
Sbjct: 265 N 265

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 59
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 60  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 94
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 372
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 95  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 153
Query: 373 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 154 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 205
Query: 432 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 488
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 206 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 489 N 489
           N
Sbjct: 266 N 266

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 65  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 372
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 373 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 432 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 488
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 489 N 489
           N
Sbjct: 271 N 271

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 57
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 58  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 92
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 372
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 93  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 151
Query: 373 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 152 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 203
Query: 432 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 488
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 204 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 489 N 489
           N
Sbjct: 264 N 264

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 372
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 373 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 432 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 488
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 489 N 489
           N
Sbjct: 268 N 268

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LAS   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 372
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 373 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 432 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 488
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 489 N 489
           N
Sbjct: 268 N 268

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   + ++KFSP+G +LA+   D +++IW              DG F          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY-----------DGKFE--------- 61
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 314
                                    + + GHK  + D+AWS +SN L+S S DKT+++W 
Sbjct: 62  -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 315 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 372
           V   +CL     H NYV C  FNP   N  +SGS D  VRIW V   + +       D +
Sbjct: 97  VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 373 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           SA+ +  DG   +  S  G C  +  ASG  LK    D           ++ ++FS +  
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 432 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 488
           + I+  + D+ L++ D      +  + G       + A+F+ T GK I+S  +D  VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 489 N 489
           N
Sbjct: 268 N 268

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 125/308 (40%), Gaps = 39/308 (12%)
Query: 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW-----HVTSVAASCKS-----FTDDG 243
           Q +  H   +W + FSPDG+ +AS  +D  V++W     H+ ++     S     F+ DG
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 244 GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLL 302
                            S    V + +   Q+    LQ L GH   V  +A+S +   + 
Sbjct: 357 -----------QTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVRGVAFSPDGQTIA 401
Query: 303 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 362
           S S DKTV++W         +  H + V  V F+P DD    S S D  V++W    + +
Sbjct: 402 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQLL 460
Query: 363 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 422
                    +  + + PDG+     S   T   +  +G    L+ +  H       + + 
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHS------SSVR 512
Query: 423 GIQFSRDESQRIMITSEDSKLRILD-GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 481
           G+ FS D  Q I   S+D  +++ +    ++    G   S S    +F+  G+ I S   
Sbjct: 513 GVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASS 569
Query: 482 DCRVYVWN 489
           D  V +WN
Sbjct: 570 DKTVKLWN 577

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 54/196 (27%)
Query: 203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSS 262
           I ++ FSPDG++LA+G ED ++RIW + +                               
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIEN------------------------------- 154
Query: 263 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQVGCNQCL 321
                   ++  I       L GH+ D+  L +  + + L+S S D+TVR+W +   QC 
Sbjct: 155 -------RKIVMI-------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 200
Query: 322 NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV--------RDVIS 373
                 + VT V  +P D  Y  +GS+D  VR+W      +V+  D         +D + 
Sbjct: 201 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 260
Query: 374 AICYIPDGKGFIVGSI 389
           ++ +  DG+  + GS+
Sbjct: 261 SVVFTRDGQSVVSGSL 276

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 42/268 (15%)
Query: 188 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS------VAASCK---- 237
           T L   + +Q H G +++L ++P+  ++ S  +DG + +W+  +      +   C     
Sbjct: 54  TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVME 113
Query: 238 -SFTDDG------GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDV 290
            +F  +G      G  S               ++PV              + L GHKG  
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVS-------------RVLTGHKGYA 160
Query: 291 LDLAW--SNSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNY 342
               +       L++ S D+T  +W V   Q +++F       H   V  +  N ++ N 
Sbjct: 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220
Query: 343 FISGSIDGKVRIWG--VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA-S 399
           FISGS D  VR+W   +  + V  +      I+++ + PDG+ F  GS  GTC  +   +
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 400 GNDLKLEKVDFHDRKKTSGNKITGIQFS 427
           G+ L++   +  DR       +T + FS
Sbjct: 281 GHQLQVYNRE-PDRNDNELPIVTSVAFS 307

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/435 (22%), Positives = 182/435 (41%), Gaps = 69/435 (15%)
Query: 95  MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKK-----VKKLWKRIIS 149
           ++ + ++D++N  +      SNG+ ++   F+          + K     ++K W  +I 
Sbjct: 2   VLSQRQRDELNRAIADYL-RSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60
Query: 150 MKKR--NVETCMSE-KRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTL 206
           ++K+   +E+ ++E K +  S  P   K + K+   +  E  AL        H+  +  +
Sbjct: 61  LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYAL------SGHRSPVTRV 114
Query: 207 KFSPDGRYLASGGEDGVVRIWHVTS--VAASCKSFTD---DGGFGSNAXXXXXXXXXXXS 261
            F P    + S  ED  +++W   +     + K  TD   D  F  +            S
Sbjct: 115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC-----S 169
Query: 262 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSMDKTVRMWQVGCNQC 320
           + + + + D  FQ  E  ++ +HGH  +V  ++   N ++++S S DKT++MW+V    C
Sbjct: 170 ADMTIKLWD--FQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 321 LNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYI 378
           +  F  H  +V  V+ N  D     S S D  VR+W V  K    +  + R V+  I + 
Sbjct: 227 VKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285
Query: 379 PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 438
           P+     +   TG+                   + KK+       +  SRD++ ++   S
Sbjct: 286 PESSYSSISEATGS-------------------ETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 439 EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY-DELCFPS 497
               L  L G D  +  +G+          F + GK I+S  DD  + VW+Y ++ C   
Sbjct: 327 TGMCLMTLVGHD--NWVRGVL---------FHSGGKFILSCADDKTLRVWDYKNKRCM-- 373
Query: 498 SKQKNSVRSCEHFFS 512
                ++ + EHF +
Sbjct: 374 ----KTLNAHEHFVT 384

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 116/282 (41%), Gaps = 33/282 (11%)
Query: 141 KKLWKRII-------------SMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEF 187
           KK WK  I             S K  N  TC++     NS        E++   K     
Sbjct: 83  KKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALL 142
Query: 188 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFG 246
             L        H+  I ++K++ DG ++ S   + V  +W+V S          + GG  
Sbjct: 143 NVL------NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196
Query: 247 SNAXXXXXXXXXXXSSH----VPVVIPDE-----VFQI-EESPLQELHGHKGDVLDLAWS 296
            NA                     VIP       V+QI E++P  +L GH G +  L ++
Sbjct: 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256
Query: 297 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355
           ++N  LLS S D T+R+W  G     N F  H+  + V  + + D+  IS S+DG VR+W
Sbjct: 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDDKVISCSMDGSVRLW 315
Query: 356 GVCEKRVVDWADVRDV-ISAICYIPDGKGFIVGSITGTCHFY 396
            + +  ++  + V  V I A     DG+ + V  + G  + Y
Sbjct: 316 SLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY 357

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 253
           + ++ H   +  +  S DG++  SG  DG +R+W +T+   + +         S A    
Sbjct: 80  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 254 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRM 312
                  S    + + + +   + +   E H      +  + ++SN  ++SC  DK V++
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199
Query: 313 WQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 371
           W +  C    N   H  Y+  V  +P D +   SG  DG+  +W + E + +   D  D+
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 258
Query: 372 ISAICYIPD 380
           I+A+C+ P+
Sbjct: 259 INALCFSPN 267

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 283 LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC------LNVFDHHNYVTCVQ 334
           L GH G V  +A +    + +LS S DKT+ MW++  ++         +  H ++V+ V 
Sbjct: 34  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 335 FNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 390
            +  D  + +SGS DG +R+W    G   +R V     +DV+S + +  D +  + GS  
Sbjct: 94  ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLS-VAFSSDNRQIVSGSRD 149
Query: 391 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDSKLRILDGV 449
            T   +    N L + K    D   +    ++ ++FS + S  I+++   D  +++ +  
Sbjct: 150 KTIKLW----NTLGVCKYTVQDESHS--EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 203
Query: 450 DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492
           +   K   +  +G   + + +  G    S G D +  +W+ +E
Sbjct: 204 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 253
           + ++ H   +  +  S DG++  SG  DG +R+W +T+   + +         S A    
Sbjct: 57  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 254 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRM 312
                  S    + + + +   + +   E H      +  + ++SN  ++SC  DK V++
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 313 WQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 371
           W +  C    N   H  Y+  V  +P D +   SG  DG+  +W + E + +   D  D+
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 235
Query: 372 ISAICYIPD 380
           I+A+C+ P+
Sbjct: 236 INALCFSPN 244

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 283 LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC------LNVFDHHNYVTCVQ 334
           L GH G V  +A +    + +LS S DKT+ MW++  ++         +  H ++V+ V 
Sbjct: 11  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 335 FNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 390
            +  D  + +SGS DG +R+W    G   +R V     +DV+S + +  D +  + GS  
Sbjct: 71  ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLS-VAFSSDNRQIVSGSRD 126
Query: 391 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDSKLRILDGV 449
            T   +    N L + K    D   +    ++ ++FS + S  I+++   D  +++ +  
Sbjct: 127 KTIKLW----NTLGVCKYTVQDESHS--EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180
Query: 450 DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 492
           +   K   +  +G   + + +  G    S G D +  +W+ +E
Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 280 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI 338
           ++ L+GHK  +  L + +   ++S S D T+R+W + C  CL V + H   V C++F   
Sbjct: 289 VRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--- 344
Query: 339 DDNYFISGSIDGKVRIWGV 357
           D+   +SG+ DGK+++W +
Sbjct: 345 DNKRIVSGAYDGKIKVWDL 363

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 275 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTC- 332
           I +  L +L GH G V  L +++   L+S S D+TVR+W +    C +VF+ HN  V C 
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 333 --VQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSI 389
             V++  I   Y ++GS D  + +W +  E  V D  +  D    + + P+   + VG +
Sbjct: 210 DIVEYKNI--KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFVGVL 266
Query: 390 TG 391
            G
Sbjct: 267 RG 268

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 44/235 (18%)
Query: 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 257
            H   + ++ FSPD R + SGG D  +R+W+V      C      G              
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK---GECMHTLSRGAH------------ 151
Query: 258 XXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC 317
                       D V  +  SP           LD     +  ++S   D  V++W +  
Sbjct: 152 -----------TDWVSCVRFSP----------SLD-----APVIVSGGWDNLVKVWDLAT 185
Query: 318 NQCL-NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC 376
            + + ++  H NYVT V  +P D +   S   DG  R+W + +   +        I+ IC
Sbjct: 186 GRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQIC 244
Query: 377 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           + P+ + ++  +       +     D+ +E    H   K    +   I +S D S
Sbjct: 245 FSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGS 298

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 275 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTC- 332
           I +  L +L GH G V  L +++   L+S S D+TVR+W +    C +VF+ HN  V C 
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 333 --VQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSI 389
             V++  I   Y ++GS D  + +W +  E  V D  +  D    + + P+   + VG +
Sbjct: 210 DIVEYKNI--KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFVGVL 266
Query: 390 TG 391
            G
Sbjct: 267 RG 268

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 118/311 (37%), Gaps = 50/311 (16%)
Query: 159 MSEKRKPNSEKPKANKMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIW 204
           MSE  +   E  +  K +++  +K C + T               + T + ++ H   I+
Sbjct: 1   MSELDQLRQEAEQL-KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 59
Query: 205 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSS 262
            + +  D R L S  +DG + IW          S+T +        +            +
Sbjct: 60  AMHWGTDSRLLVSASQDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 263 HVPVVIPDEVFQIEESPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 314
           +V     D +  I     +E        L GH G +    + + N +++ S D T  +W 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 315 VGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 369
           +   Q    F  H   V  +   P D   F+SG+ D   ++W    G+C +    +    
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHE 226
Query: 370 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429
             I+AIC+ P+G  F  GS   TC  +     DL+ ++             IT + FS+ 
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK- 280
Query: 430 ESQRIMITSED 440
            S R+++   D
Sbjct: 281 -SGRLLLAGYD 290

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 53/237 (22%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   +  L+++PDGR+LASGG D +V +W          S   +GG+          
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW---------- 266
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVR 311
                                  PLQ    H+G V  +AW    SN L +   + D+ +R
Sbjct: 267 ----------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 304
Query: 312 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS--IDGKVRIWGV-CEKRVVDWADV 368
           +W V    CL+  D H+ V  + ++P      ISG      ++ IW      +V +    
Sbjct: 305 IWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 363
Query: 369 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425
              + ++   PDG      +   T   ++      +L+     +R+K S  K + I 
Sbjct: 364 TSRVLSLTMSPDGATVASAAADETLRLWRC----FELDPARRREREKASAAKSSLIH 416

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 53/237 (22%)
Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 255
           +  H   +  L+++PDGR+LASGG D +V +W          S   +GG+          
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW---------- 277
Query: 256 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVR 311
                                  PLQ    H+G V  +AW    SN L +   + D+ +R
Sbjct: 278 ----------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 315
Query: 312 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS--IDGKVRIWGV-CEKRVVDWADV 368
           +W V    CL+  D H+ V  + ++P      ISG      ++ IW      +V +    
Sbjct: 316 IWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 374
Query: 369 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 425
              + ++   PDG      +   T   ++      +L+     +R+K S  K + I 
Sbjct: 375 TSRVLSLTMSPDGATVASAAADETLRLWRC----FELDPARRREREKASAAKSSLIH 427

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 117/311 (37%), Gaps = 50/311 (16%)
Query: 159 MSEKRKPNSEKPKANKMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIW 204
           MSE  +   E  +  K +++  +K C + T               + T + ++ H   I+
Sbjct: 1   MSELDQLRQEAEQL-KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 59
Query: 205 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSS 262
            + +  D R L S  +DG + IW          S+T +        +            +
Sbjct: 60  AMHWGTDSRLLLSASQDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 263 HVPVVIPDEVFQIEESPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 314
           +V     D +  I     +E        L GH G +    + + N +++ S D T  +W 
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 315 V-GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 369
           +    Q      H   V  +   P D   F+SG+ D   ++W    G+C +    +    
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHE 226
Query: 370 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429
             I+AIC+ P+G  F  GS   TC  +     DL+ ++             IT + FS+ 
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK- 280
Query: 430 ESQRIMITSED 440
            S R+++   D
Sbjct: 281 -SGRLLLAGYD 290

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 174 KMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG 219
           K +++  +K C + T               + T + ++ H   I+ + +  D R L S  
Sbjct: 15  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 74
Query: 220 EDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 277
           +DG + IW          S+T +        +            ++V     D +  I  
Sbjct: 75  QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 278 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 329
              +E        L GH G +    + + N +++ S D T  +W +   Q    F  H  
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 330 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 384
            V  +   P D   F+SG+ D   ++W    G+C +    +      I+AIC+ P+G  F
Sbjct: 186 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 241
Query: 385 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 440
             GS   TC  +     DL+ ++             IT + FS+  S R+++   D
Sbjct: 242 ATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYD 290

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 115/302 (38%), Gaps = 49/302 (16%)
Query: 168 EKPKANKMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGR 213
           ++ +  K +++  +K C + T               + T + ++ H   I+ + +  D R
Sbjct: 20  QEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSR 79
Query: 214 YLASGGEDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDE 271
            L S  +DG + IW          S+T +        +            ++V     D 
Sbjct: 80  LLVSASQDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 130
Query: 272 VFQIEESPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV 323
           +  I     +E        L GH G +    + + N +++ S D T  +W +   Q    
Sbjct: 131 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 190
Query: 324 FDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYI 378
           F  H   V  +   P D   F+SG+ D   ++W    G+C +    +      I+AIC+ 
Sbjct: 191 FTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFF 246
Query: 379 PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 438
           P+G  F  GS   TC  +     DL+ ++             IT + FS+  S R+++  
Sbjct: 247 PNGNAFATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAG 299
Query: 439 ED 440
            D
Sbjct: 300 YD 301

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 174 KMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG 219
           K +++  +K C + T               + T + ++ H   I+ + +  D R L S  
Sbjct: 15  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSAS 74
Query: 220 EDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 277
           +DG + IW          S+T +        +            ++V     D +  I  
Sbjct: 75  QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 278 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 329
              +E        L GH G +    + + N +++ S D T  +W +   Q    F  H  
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 330 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 384
            V  +   P D   F+SG+ D   ++W    G+C +    +      I+AIC+ P+G  F
Sbjct: 186 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 241
Query: 385 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 440
             GS   TC  +     DL+ ++             IT + FS+  S R+++   D
Sbjct: 242 ATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYD 290

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 96/255 (37%), Gaps = 27/255 (10%)
Query: 160 SEKRKPNSEKPKANKMEVKQNKKKCMEFT--ALYTSQEIQAHKGCIWTLKFSPDGRYLAS 217
           S K K   E+ K + +E+ Q  ++        + T + ++ H   +  + +  D R + S
Sbjct: 22  SLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVS 81
Query: 218 GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 277
             +DG V +W          SFT +                   S   +       +   
Sbjct: 82  SSQDGKVIVW---------DSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132
Query: 278 SPL------------QELHGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVF 324
            PL            + +  H   +   +++NS+  +L+ S D T  +W V   Q L  F
Sbjct: 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192
Query: 325 DHHNY-VTCVQFNPIDD-NYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAICYIPDG 381
             H   V C+   P +  N F+SG  D K  +W +   + V   +  +  ++++ Y P G
Sbjct: 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG 252
Query: 382 KGFIVGSITGTCHFY 396
             F  GS   TC  Y
Sbjct: 253 DAFASGSDDATCRLY 267

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 45/136 (33%)
Query: 206 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 265
           L+++PDGR+LASGG D +V +W          S   +GG+                    
Sbjct: 156 LRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW-------------------- 186
Query: 266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVRMWQVGCNQCL 321
                        PLQ    H+G V  +AW    SN L +   + D+ +R+W V    CL
Sbjct: 187 ------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234
Query: 322 NVFDHHNYVTCVQFNP 337
           +  D H+ V  + ++P
Sbjct: 235 SAVDAHSQVCSILWSP 250

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 5/191 (2%)
Query: 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 253
           + +  H   +  +  S DG++  SG  DG +R+W + +  ++ +         S A    
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 254 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY---LLSCSMDKTV 310
                  S    + + + + + + +  +   GH+  V  + +S +     ++S S DKTV
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 311 RMWQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR 369
           ++W +  C     +  H  YV+ V  +P D +   SG  DG V +W + E + +   +  
Sbjct: 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602
Query: 370 DVISAICYIPD 380
            VI A+C+ P+
Sbjct: 603 SVIHALCFSPN 613

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 55/257 (21%)
Query: 279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 336
           P + L GH   V DLA S  N + +S S DKT+R+W +        F  H + V  V F+
Sbjct: 68  PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 337 PIDDNYFISGSIDGKVRIW---GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTC 393
           P D+   +S   + ++++W   G C+    +  +  D +S + Y P  K      +    
Sbjct: 128 P-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKS--ANKVQPFA 184
Query: 394 HFYKASGND--LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 451
            ++ + G D  LK+   +F  R                                      
Sbjct: 185 PYFASVGWDGRLKVWNTNFQIR-------------------------------------- 206
Query: 452 IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 511
            + FK    + + +S S    GK+I + G D ++ +W+   L +P  +        +  F
Sbjct: 207 -YTFKAHESNVNHLSIS--PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAF 263
Query: 512 SEGVSVAVQWPGIGTEQ 528
           +      +QW  +GT+Q
Sbjct: 264 NP----KLQWVAVGTDQ 276

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 58/172 (33%)
Query: 188 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 247
           T L+T   +Q H   +++L+F  DG ++ SG  D  +R+W V +   +C           
Sbjct: 270 TCLHT---LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET--GNC----------- 311
Query: 248 NAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMD 307
                                           +  L GH+     +   + N L+S + D
Sbjct: 312 --------------------------------IHTLTGHQSLTSGMELKD-NILVSGNAD 338
Query: 308 KTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355
            TV++W +   QCL        H + VTC+QFN    N+ I+ S DG V++W
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLW 387

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN 336
           E+ L  L GH   V  L + +  +++S S+D ++R+W V    C++    H  +T     
Sbjct: 269 ETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM-- 325
Query: 337 PIDDNYFISGSIDGKVRIWGV 357
            + DN  +SG+ D  V+IW +
Sbjct: 326 ELKDNILVSGNADSTVKIWDI 346

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 300 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 357
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 358 CE 359
            +
Sbjct: 171 GQ 172

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 300 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 357
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 358 CE 359
            +
Sbjct: 171 GQ 172

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 300 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 357
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 358 CE 359
            +
Sbjct: 171 GQ 172

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 300 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 357
           Y+LS S D TV++W    N  L   F+ H ++V CV FNP D + F SG +D  V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 358 CE 359
            +
Sbjct: 171 GQ 172

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 46/186 (24%)
Query: 176 EVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS 235
           ++K    K  +FT +    E  AHK  I ++ + P    LA+G  D  V IW     A  
Sbjct: 35  KIKLVSVKYDDFTLIDVLDE-TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESA-- 91
Query: 236 CKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW 295
                                             D  F+++   L  + GH+ +V  +AW
Sbjct: 92  ----------------------------------DRTFEMD--LLAIIEGHENEVKGVAW 115
Query: 296 SNSNYLL-SCSMDKTVRMWQVGCN----QCLNVFDHHNY-VTCVQFNPIDDNYFISGSID 349
           SN  Y L +CS DK+V +W+   +    +C++V   H+  V  V ++P  +    S S D
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYD 174
Query: 350 GKVRIW 355
             VRIW
Sbjct: 175 DTVRIW 180

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Query: 204 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS--NAXXXXXXXXXXXS 261
           W L ++P G  LAS G D  +RIW     +  CKS   +G   +               +
Sbjct: 20  WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79
Query: 262 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCN-- 318
           S        +  Q +   +  L GH+ +V  +AW+ S N L +CS DK+V +W+V     
Sbjct: 80  SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139
Query: 319 -QCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW 355
            +C++V + H   V  V ++P  +    S S D  V+++
Sbjct: 140 YECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLY 177

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 215 LASGGEDGVVRIWH-----VTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIP 269
           +AS   DG VR+W      + +V  + + F +   + S              + VP+   
Sbjct: 32  VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 270 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 329
                  E PL  L GH+G+V  L++ +   ++S S DKT ++W+ G +   N+  H+  
Sbjct: 92  SG-----EDPLYTLIGHQGNVCSLSFQD-GVVISGSWDKTAKVWKEG-SLVYNLQAHNAS 144
Query: 330 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGS 388
           V   +     +N F++ S D  +++W   +K +  ++ +  DV+  +  + DG       
Sbjct: 145 VWDAKVVSFSENKFLTASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDG------- 196
Query: 389 ITGTCHFYKASGNDLKLEKVDFH 411
                HF   S ND  ++ VD H
Sbjct: 197 -----HFISCS-NDGLIKLVDXH 213

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 26/204 (12%)
Query: 198  AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 257
             HK  +  ++F+ DG+ L S  ED V+++W+           T D  F            
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---------TGDYVFLQAHQETVKDFR 1058
Query: 258  XXXSSHVPVVIPDEVFQ----IEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 312
                S +     D   +    I     ++   H+G VL  A S ++    S S DKT ++
Sbjct: 1059 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1118
Query: 313  WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 371
            W       L+    HN  V C  F+ +D     +G  +G++RIW V + +++       V
Sbjct: 1119 WSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1177
Query: 372  ----------ISAICYIPDGKGFI 385
                      ++ +C+ PD K  +
Sbjct: 1178 EEGTATHGGWVTDVCFSPDSKTLV 1201

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 26/204 (12%)
Query: 198  AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 257
             HK  +  ++F+ DG+ L S  ED V+++W+           T D  F            
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---------TGDYVFLQAHQETVKDFR 1051
Query: 258  XXXSSHVPVVIPDEVFQ----IEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 312
                S +     D   +    I     ++   H+G VL  A S ++    S S DKT ++
Sbjct: 1052 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111
Query: 313  WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 371
            W       L+    HN  V C  F+ +D     +G  +G++RIW V + +++       V
Sbjct: 1112 WSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1170
Query: 372  ----------ISAICYIPDGKGFI 385
                      ++ +C+ PD K  +
Sbjct: 1171 EEGTATHGGWVTDVCFSPDSKTLV 1194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	645
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.98
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
2pm7_B	297	Protein transport protein SEC13, protein transport	99.98
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.84
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.77
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.72
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.72
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.7
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.66
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.66
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.65
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.63
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.62
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.61
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.58
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.58
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.58
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.55
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.55
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.54
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.54
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.53
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.52
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.52
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.5
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.5
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.46
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.45
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.44
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.43
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.42
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.42
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.41
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.41
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.36
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.35
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.34
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.34
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.34
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.34
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.32
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.29
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.29
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.29
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.26
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.24
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.23
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.22
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.21
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.19
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.18
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.16
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.15
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.12
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.11
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.09
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.03
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.03
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.99
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.96
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.89
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.79
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.79
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.77
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.74
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.74
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.73
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.71
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.71
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.69
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.69
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.67
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.64
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.62
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.62
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.62
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.6
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.58
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.57
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.57
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.54
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.53
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.49
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.48
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.46
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.42
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.4
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.39
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.38
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.37
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.33
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.32
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.32
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.32
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.23
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.23
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.21
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.19
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.18
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.17
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.14
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.12
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.1
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.03
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.02
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.95
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.93
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.92
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.92
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.92
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.9
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.89
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.8
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.8
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.78
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.74
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.74
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.74
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.72
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.71
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.61
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.58
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.56
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.53
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.52
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.51
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.5
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.46
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.42
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.41
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.4
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.37
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.33
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.31
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.31
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.27
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.22
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.18
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.13
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.1
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.02
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.92
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.88
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.82
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.73
3ott_A	758	Two-component system sensor histidine kinase; beta	96.63
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.54
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.43
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.39
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.36
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.23
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.2
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.14
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.08
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.99
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.99
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.83
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.8
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.59
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.33
3ott_A	758	Two-component system sensor histidine kinase; beta	95.3
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.2
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.2
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.94
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.81
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.75
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.4
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.34
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.22
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.17
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.1
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.83
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.83
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.65
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.03
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.8
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	91.79
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	91.7
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.24
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.72
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	89.52
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	88.02
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	87.21
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	86.89
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.07
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	85.72
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	80.82
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	80.51

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.4e-46  Score=416.94  Aligned_cols=411  Identities=17%  Similarity=0.191  Sum_probs=302.5

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee-------------eeEecCCCCcccCCCCceEEecc
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS-------------CKSFTDDGGFGSNAKEGKIKFGK  258 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~  258 (645)
                      ..++|.+|.+.|++++|+|+|++||+|+.||+|+|||+.++...             ...|.+++..+.....       
T Consensus        51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~-------  123 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGE-------  123 (611)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEEC-------
T ss_pred             cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEEC-------
Confidence            44568899999999999999999999999999999998754322             1122222222111100       


Q ss_pred             cCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEE
Q 006424          259 KKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQF  335 (645)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~  335 (645)
                      .......+..    |+ .+.....+.+|...|++++|+|++  .|++|+.|++|++||..++++...+. |...|.+++|
T Consensus       124 ~~~~~~~v~~----wd-~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~f  198 (611)
T 1nr0_A          124 GRERFGHVFL----FD-TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY  198 (611)
T ss_dssp             CSSCSEEEEE----TT-TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEE
T ss_pred             CCCceeEEEE----ee-CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEE
Confidence            0000011111    22 134556788999999999999986  59999999999999999998888875 9999999999


Q ss_pred             eeCCCCEEEEEeCCCcEEEEeCCCCcEEEee--------ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424          336 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK  407 (645)
Q Consensus       336 ~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--------~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~  407 (645)
                      +| ++++|++|+.|++|++||+.+++.....        +|...|.+++|+|+|++|++++.|++|++||+.+.......
T Consensus       199 sp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~  277 (611)
T 1nr0_A          199 NP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  277 (611)
T ss_dssp             CT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence            99 9999999999999999999988776543        68999999999999999999999999999999876543211


Q ss_pred             Ee------------------------------------eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc
Q 006424          408 VD------------------------------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV  451 (645)
Q Consensus       408 ~~------------------------------------~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~  451 (645)
                      ..                                    .......|...|++++|+|+| .+|++++.|+.|++||+...
T Consensus       278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTC
T ss_pred             cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCC
Confidence            00                                    001123467899999999998 89999999999999997532


Q ss_pred             eeeEe---------------------------------------------------------------------------
Q 006424          452 IHKFK---------------------------------------------------------------------------  456 (645)
Q Consensus       452 ~~~~~---------------------------------------------------------------------------  456 (645)
                      .....                                                                           
T Consensus       357 ~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~  436 (611)
T 1nr0_A          357 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI  436 (611)
T ss_dssp             CEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEE
T ss_pred             ceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEE
Confidence            11000                                                                           


Q ss_pred             -------ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcccc
Q 006424          457 -------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK  529 (645)
Q Consensus       457 -------~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~  529 (645)
                             ...+...+.+++|+|||++|++|+.|++|++||+.++...         ......+.+.+.+++|+|++.+|+
T Consensus       437 ~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~---------~~~~~~h~~~v~~v~fspdg~~la  507 (611)
T 1nr0_A          437 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS---------EVKTIVHPAEITSVAFSNNGAFLV  507 (611)
T ss_dssp             EETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE---------EEEEEECSSCEEEEEECTTSSEEE
T ss_pred             EeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee---------eeeccCCCCceEEEEECCCCCEEE
Confidence                   0012345778999999999999999999999998765211         011134567789999999999999


Q ss_pred             ccCCCCccccCccccccccCC-----ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhh
Q 006424          530 SLCSSSLRDCSQKWDNLETAP-----WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQ  604 (645)
Q Consensus       530 ~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~  604 (645)
                      +.+.|.   .+.+|+......     ....|...+.+++|||||+++++++. |++|++|++.++....       ....
T Consensus       508 s~s~d~---~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~-D~~v~lW~~~~~~~~~-------~~~~  576 (611)
T 1nr0_A          508 ATDQSR---KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL-DNSVIVWNMNKPSDHP-------IIIK  576 (611)
T ss_dssp             EEETTS---CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTCTTSCC-------EEET
T ss_pred             EEcCCC---CEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEEC-CCcEEEEECCCccccc-------chhh
Confidence            877764   356777643111     12337888999999999999999998 9999999998762000       0011


Q ss_pred             hhc-cCCCCCccCCCCcceEEEEecCCCeEeEEEe
Q 006424          605 QCL-NNVDDVRAISATWGLVIVTAGCDGMIKTFHN  638 (645)
Q Consensus       605 ~~~-~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~  638 (645)
                      ..| ......++|++ |++ |+|||.||+||+|++
T Consensus       577 ~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          577 GAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             TSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEEC
T ss_pred             ccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEec
Confidence            122 12222344555 688 999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.5e-45  Score=406.32  Aligned_cols=455  Identities=23%  Similarity=0.350  Sum_probs=329.2

Q ss_pred             hhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchhH
Q 006424           97 DELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKME  176 (645)
Q Consensus        97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (645)
                      +.|++|...|..++|+|++.. +++.+.            |+.++.|                                 
T Consensus        10 ~~L~GH~~~V~~~a~spdg~~-las~~~------------d~~v~iW---------------------------------   43 (577)
T 2ymu_A           10 NRLEAHSSSVRGVAFSPDGQT-IASASD------------DKTVKLW---------------------------------   43 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSC-EEEEET------------TSEEEEE---------------------------------
T ss_pred             eEECCCCCcEEEEEECCCCCE-EEEEeC------------CCEEEEE---------------------------------
Confidence            358999999999999999987 777776            5555555                                 


Q ss_pred             hhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC----------ceeeeEecCCCCcc
Q 006424          177 VKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV----------AASCKSFTDDGGFG  246 (645)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~----------~~~~~~~~~~~~~~  246 (645)
                        ..        .....++|.+|.+.|++++|+|||++||+|+.|++|+|||....          ......+.+++..+
T Consensus        44 --d~--------~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l  113 (577)
T 2ymu_A           44 --NR--------NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI  113 (577)
T ss_dssp             --CT--------TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             --EC--------CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEE
Confidence              00        00134567889999999999999999999999999999986432          11223344443322


Q ss_pred             cCCC-CceEEec-----------------------------------------ccC----------------------CC
Q 006424          247 SNAK-EGKIKFG-----------------------------------------KKK----------------------SS  262 (645)
Q Consensus       247 ~~~~-~~~~~~~-----------------------------------------~~~----------------------~~  262 (645)
                      .... .+.+.++                                         ...                      ..
T Consensus       114 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  193 (577)
T 2ymu_A          114 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ  193 (577)
T ss_dssp             EEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS
T ss_pred             EEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCC
Confidence            1111 0000000                                         000                      00


Q ss_pred             cceeecCC---CceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEee
Q 006424          263 HVPVVIPD---EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNP  337 (645)
Q Consensus       263 ~~~~~~~~---~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p  337 (645)
                      .......+   .+|+...+.+..+.+|...|.+++|+|++ +|++++.|+.|++||.. ++.+..+ .|...|.+++|+|
T Consensus       194 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~  272 (577)
T 2ymu_A          194 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRP  272 (577)
T ss_dssp             CEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECT
T ss_pred             EEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcC
Confidence            00000111   23444566677888999999999999997 89999999999999975 4555555 5889999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424          338 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  417 (645)
Q Consensus       338 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  417 (645)
                       +++.+++++.|+.|++||........+.+|...|.+++|+|+++.+++++.||.|++||.......  .  +.    .|
T Consensus       273 -d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~--~--~~----~~  343 (577)
T 2ymu_A          273 -DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ--T--LT----GH  343 (577)
T ss_dssp             -TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE--E--EC----CC
T ss_pred             -CCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE--E--Ee----CC
Confidence             999999999999999999877777778889999999999999999999999999999998755432  1  12    23


Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcC
Q 006424          418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP  496 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~  496 (645)
                      ...+.+++|+|++ .++++++.|+.|++||... ....+  ..|...|.+++|+|++++|++++.|+.|++||.......
T Consensus       344 ~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~~~~~~~--~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~  420 (577)
T 2ymu_A          344 SSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ  420 (577)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSEEEEEETTCCEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEE
T ss_pred             CCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCCCEEEEe--cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEE
Confidence            5789999999998 8999999999999999653 33333  347889999999999999999999999999997543211


Q ss_pred             CCcccCCcceeeee------------------------------ecCCcEEEEecCCCCccccccCCCCccccCcccccc
Q 006424          497 SSKQKNSVRSCEHF------------------------------FSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL  546 (645)
Q Consensus       497 ~~~~~~~~~~~~~~------------------------------~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~  546 (645)
                      ...........+.|                              .+.+.+.+++|+|++..|++.+.|.   .+++|+..
T Consensus       421 ~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~---~i~iw~~~  497 (577)
T 2ymu_A          421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK---TVKLWNRN  497 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTS---EEEEEETT
T ss_pred             EecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC---EEEEEcCC
Confidence            10000111111112                              2345567788999999998777664   35677753


Q ss_pred             cc-CCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCC--ccCCCCcceE
Q 006424          547 ET-APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLV  623 (645)
Q Consensus       547 ~~-~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~  623 (645)
                      .. ...+..|...+++++|||||+++++++. |+.|++||....            .......|...+  ++|++ ||++
T Consensus       498 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-dg~v~lwd~~~~------------~~~~~~~h~~~v~~~~fs~-dg~~  563 (577)
T 2ymu_A          498 GQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWNRNGQ------------LLQTLTGHSSSVWGVAFSP-DGQT  563 (577)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSCEEEEET-TSEEEEECTTSC------------EEEEEECCSSCEEEEEECT-TSSC
T ss_pred             CCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC-cCEEEEEeCCCC------------EEEEEcCCCCCEEEEEEcC-CCCE
Confidence            22 2255677888999999999999999998 999999996432            112223344443  45655 7999


Q ss_pred             EEEecCCCeEeEEE
Q 006424          624 IVTAGCDGMIKTFH  637 (645)
Q Consensus       624 ivt~s~Dg~Iriw~  637 (645)
                      |+|+|.||+|++|+
T Consensus       564 l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          564 IASASSDKTVKLWN  577 (577)
T ss_dssp             EEEEETTSCEEEEC
T ss_pred             EEEEeCCCEEEEeC
Confidence            99999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.9e-43  Score=391.68  Aligned_cols=380  Identities=16%  Similarity=0.119  Sum_probs=279.0

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .+.+.+.+++|+|||++||+++ ++.|++|++.+                                             .
T Consensus        16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~---------------------------------------------~   49 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS---------------------------------------------L   49 (611)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC---------------------------------------------S
T ss_pred             cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCC---------------------------------------------c
Confidence            4678899999999999999998 56999999976                                             3


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe-------------------------------------
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-------------------------------------  319 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~-------------------------------------  319 (645)
                      .....+.+|...|++++|+|++ +|++|+.|++|+|||+.+++                                     
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~  129 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  129 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence            4456667777777777777776 67777777777777764321                                     


Q ss_pred             ---------EEEEe-cCCCcEEEEEEeeCCCC-EEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEE
Q 006424          320 ---------CLNVF-DHHNYVTCVQFNPIDDN-YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVG  387 (645)
Q Consensus       320 ---------~~~~~-~~~~~v~~l~~~p~~~~-~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g  387 (645)
                               ....+ +|...|++++|+| ++. .|++|+.|++|++||...++... +.+|...|++++|+|+|++|++|
T Consensus       130 ~v~~wd~~~~~~~l~gh~~~v~~v~f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~  208 (611)
T 1nr0_A          130 HVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST  208 (611)
T ss_dssp             EEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEeeCCCCcceecCCCCCceEEEECC-CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence                     11111 3666788888888 554 69999999999999998876554 67899999999999999999999


Q ss_pred             ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee--eE----------
Q 006424          388 SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--KF----------  455 (645)
Q Consensus       388 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~--~~----------  455 (645)
                      +.|+.|++||+.+................|...|.+++|+|+| .+|++++.|++|++||+.....  .+          
T Consensus       209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~  287 (611)
T 1nr0_A          209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ  287 (611)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred             ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCcccee
Confidence            9999999999987664322101000112467899999999998 8999999999999999764221  11          


Q ss_pred             -------------------------------eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCc---cc
Q 006424          456 -------------------------------KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK---QK  501 (645)
Q Consensus       456 -------------------------------~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~---~~  501 (645)
                                                     ....|...|.+++|+|+|++|++++.||+|++||+.++......   +.
T Consensus       288 ~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~  367 (611)
T 1nr0_A          288 LGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA  367 (611)
T ss_dssp             EEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS
T ss_pred             EEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCc
Confidence                                           12357889999999999999999999999999999876421110   10


Q ss_pred             C-------------------------------------------CcceeeeeecCC------------------------
Q 006424          502 N-------------------------------------------SVRSCEHFFSEG------------------------  514 (645)
Q Consensus       502 ~-------------------------------------------~~~~~~~~~~~g------------------------  514 (645)
                      .                                           .......+++++                        
T Consensus       368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~  447 (611)
T 1nr0_A          368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI  447 (611)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred             ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence            0                                           001122233332                        


Q ss_pred             --cEEEEecCCCCccccccCCCCccccCccccccccCC---ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCcc-
Q 006424          515 --VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP---WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI-  588 (645)
Q Consensus       515 --~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~-  588 (645)
                        .+.+++|+|++..|++.+.|+   .+++|+......   ....|...+++++|||||+++++++. |++|++|++.+ 
T Consensus       448 ~~~v~~va~spdg~~lasgs~D~---~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~-d~~v~~w~~~~~  523 (611)
T 1nr0_A          448 SYNSSCVALSNDKQFVAVGGQDS---KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVANN  523 (611)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTS---EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEEGGGT
T ss_pred             CCCceEEEEeCCCCEEEEeCCCC---eEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcC-CCCEEEEEcCCC
Confidence              356789999999999887764   466777643211   12457788999999999999999998 99999999987 


Q ss_pred             CCCCCcCChhhhHhhh-hh--ccCCCCCccCCCCcceEEEEecCCCeEeEEEecC
Q 006424          589 DSDGYCQDPQQQRLQQ-QC--LNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYG  640 (645)
Q Consensus       589 ~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~g  640 (645)
                      ++          .... ..  |......++|++ ||++|+|||.||+||+|++..
T Consensus       524 ~~----------~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~~  567 (611)
T 1nr0_A          524 FE----------LAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNK  567 (611)
T ss_dssp             TE----------ESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTC
T ss_pred             Cc----------eeeeeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECCC
Confidence            31          0011 11  222233355666 799999999999999999753

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1e-42  Score=383.76  Aligned_cols=377  Identities=23%  Similarity=0.366  Sum_probs=283.3

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ..+.|+||++.|++++|||||++||+|+.|++|+|||..                                         
T Consensus         8 e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~-----------------------------------------   46 (577)
T 2ymu_A            8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----------------------------------------   46 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-----------------------------------------
T ss_pred             EeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-----------------------------------------
Confidence            345689999999999999999999999999999999953                                         


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                           ++.+..+.+|.+.|++++|+|++ +|++++.|++|++||.. ++.+..+ .|...|.+++|+| ++++|++++.|
T Consensus        47 -----~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d  119 (577)
T 2ymu_A           47 -----GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDD  119 (577)
T ss_dssp             -----SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             -----CCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEEEEEECCCCCEEEEEECC-CCCEEEEEcCC
Confidence                 35577889999999999999998 89999999999999964 5555555 4777788888877 66666666666


Q ss_pred             CcEEEEeC------------------------------------------------------------------------
Q 006424          350 GKVRIWGV------------------------------------------------------------------------  357 (645)
Q Consensus       350 g~i~vwd~------------------------------------------------------------------------  357 (645)
                      +.+++|+.                                                                        
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  199 (577)
T 2ymu_A          120 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS  199 (577)
T ss_dssp             SCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             CceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEc
Confidence            66655553                                                                        


Q ss_pred             ----------CCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424          358 ----------CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  427 (645)
Q Consensus       358 ----------~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s  427 (645)
                                .......+..|...|.+++|+|+++++++++.|+.|++||......  ..  +    ..|...|.+++|+
T Consensus       200 ~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~--~~--~----~~~~~~v~~v~~~  271 (577)
T 2ymu_A          200 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL--QT--L----TGHSSSVNGVAFR  271 (577)
T ss_dssp             TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE--EE--E----CCCSSCEEEEEEC
T ss_pred             CCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEE--EE--E----ecCCCCEEEEEEc
Confidence                      2222333456777899999999999999999999999999754322  11  1    2245789999999


Q ss_pred             CCCCcEEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcce
Q 006424          428 RDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRS  506 (645)
Q Consensus       428 ~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~  506 (645)
                      |++ ..+++++.|+.|++||... ....+  ..|...|.+++|+|++++|++++.||.|++||+................
T Consensus       272 ~d~-~~l~~~~~d~~i~~w~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~  348 (577)
T 2ymu_A          272 PDG-QTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW  348 (577)
T ss_dssp             TTS-SEEEEEETTSCEEEEETTSCEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE
T ss_pred             CCC-CEEEEEeCCCEEEEEeCCCcEEEEE--ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEE
Confidence            998 8999999999999999653 23333  4488899999999999999999999999999987653211111111111


Q ss_pred             eeeee------------------------------cCCcEEEEecCCCCccccccCCCCccccCcccccccc-CCccCCC
Q 006424          507 CEHFF------------------------------SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET-APWIRDS  555 (645)
Q Consensus       507 ~~~~~------------------------------~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~-~~~~~~~  555 (645)
                      ++.|+                              +.+.+.+++|+|++..|++.+.+.   .+.+|+.... ......+
T Consensus       349 ~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~---~v~~~~~~~~~~~~~~~~  425 (577)
T 2ymu_A          349 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK---TVKLWNRNGQLLQTLTGH  425 (577)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS---EEEEECTTCCEEEEEECC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCC---EEEEEeCCCCEEEEecCC
Confidence            11111                              345567788899999888776664   3556764222 2245667


Q ss_pred             CccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCC--CccCCCCcceEEEEecCCCeE
Q 006424          556 ERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDD--VRAISATWGLVIVTAGCDGMI  633 (645)
Q Consensus       556 ~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~ivt~s~Dg~I  633 (645)
                      ...+++++|+||++++++++. |+.|++||.....            ......|...  .++|++ |+++|+|++.||+|
T Consensus       426 ~~~v~~~~~s~d~~~l~~~~~-d~~v~~w~~~~~~------------~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i  491 (577)
T 2ymu_A          426 SSSVWGVAFSPDDQTIASASD-DKTVKLWNRNGQL------------LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTV  491 (577)
T ss_dssp             SSCEEEEEECTTSSEEEEEET-TSEEEEEETTSCE------------EEEEECCSSCEEEEEECT-TSCEEEEEETTSEE
T ss_pred             CCCeEEEEECCCCCEEEEEcC-CCEEEEEECCCCE------------EEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEE
Confidence            888999999999999999988 8999999975431            1112223333  345555 79999999999999


Q ss_pred             eEEEecCcccc
Q 006424          634 KTFHNYGLPIR  644 (645)
Q Consensus       634 riw~~~g~~~~  644 (645)
                      ++|+..|.+++
T Consensus       492 ~iw~~~~~~~~  502 (577)
T 2ymu_A          492 KLWNRNGQLLQ  502 (577)
T ss_dssp             EEEETTSCEEE
T ss_pred             EEEcCCCCEEE
Confidence            99998876653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-42  Score=363.39  Aligned_cols=254  Identities=20%  Similarity=0.377  Sum_probs=224.0

Q ss_pred             ccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424          187 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  266 (645)
Q Consensus       187 ~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (645)
                      .+.......+.+|.++|++++|+|++++|++|+.||+|++||+.+                                   
T Consensus        95 ~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~-----------------------------------  139 (410)
T 1vyh_C           95 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-----------------------------------  139 (410)
T ss_dssp             CCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT-----------------------------------
T ss_pred             ccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------------------------------
Confidence            344445677899999999999999999999999999999999987                                   


Q ss_pred             ecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEE
Q 006424          267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~  344 (645)
                                +.....+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...|.+++|+| ++++++
T Consensus       140 ----------~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p-~~~~l~  208 (410)
T 1vyh_C          140 ----------GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIV  208 (410)
T ss_dssp             ----------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS-SSSEEE
T ss_pred             ----------CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeC-CCCEEE
Confidence                      45567889999999999999987 89999999999999999999888874 889999999999 999999


Q ss_pred             EEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424          345 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  423 (645)
Q Consensus       345 s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (645)
                      +|+.|++|++||++++.+.. +.+|...|.++.|+|+++++++|+.||.|++||+.+......   +.    .|...|.+
T Consensus       209 s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~---~~----~h~~~v~~  281 (410)
T 1vyh_C          209 SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE---LR----EHRHVVEC  281 (410)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---EC----CCSSCEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE---ec----CCCceEEE
Confidence            99999999999999887654 678999999999999999999999999999999987765322   22    24578999


Q ss_pred             EEEcCCC-------------------CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424          424 IQFSRDE-------------------SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR  484 (645)
Q Consensus       424 i~~s~~g-------------------~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~  484 (645)
                      ++|+|++                   ..++++|+.|+.|++||++..........|...|.+++|+|++++|++|+.||.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~  361 (410)
T 1vyh_C          282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT  361 (410)
T ss_dssp             EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred             EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            9999962                   258999999999999998866555555568899999999999999999999999


Q ss_pred             EEEEeCCCC
Q 006424          485 VYVWNYDEL  493 (645)
Q Consensus       485 I~iwd~~~~  493 (645)
                      |++||+.++
T Consensus       362 i~vwd~~~~  370 (410)
T 1vyh_C          362 LRVWDYKNK  370 (410)
T ss_dssp             EEEECCTTS
T ss_pred             EEEEECCCC
Confidence            999998765

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.1e-40  Score=393.97  Aligned_cols=451  Identities=15%  Similarity=0.197  Sum_probs=329.7

Q ss_pred             hhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchhHh
Q 006424           98 ELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEV  177 (645)
Q Consensus        98 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (645)
                      .+.+|...|+.++|+|++.. +++++.            |+.++.|                                  
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~-l~s~~~------------d~~i~vw----------------------------------  642 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQR-IASCGA------------DKTLQVF----------------------------------  642 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSE-EEEEET------------TSCEEEE----------------------------------
T ss_pred             EEecccccEEEEEECCCCCE-EEEEeC------------CCeEEEE----------------------------------
Confidence            57789999999999999887 676666            4444444                                  


Q ss_pred             hhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCC----CCce
Q 006424          178 KQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA----KEGK  253 (645)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~  253 (645)
                       .       ........++.+|.+.|++++|+|+|++|++|+.||.|++||+.++.................    ....
T Consensus       643 -~-------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  714 (1249)
T 3sfz_A          643 -K-------AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL  714 (1249)
T ss_dssp             -E-------TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCC
T ss_pred             -E-------CCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCce
Confidence             0       001113456779999999999999999999999999999999998776544332222211000    0111


Q ss_pred             EEecccCCCcceeecCCCceec-cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-------
Q 006424          254 IKFGKKKSSHVPVVIPDEVFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-------  324 (645)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-------  324 (645)
                      +.........+      .+|+. .+.....+.+|.+.|++++|+|++ .+++++.||+|++||+.+++....+       
T Consensus       715 ~l~sg~~d~~v------~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~  788 (1249)
T 3sfz_A          715 LLATGSNDFFL------KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL  788 (1249)
T ss_dssp             EEEEEETTSCE------EEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-
T ss_pred             EEEEEeCCCeE------EEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccc
Confidence            11111111111      23333 245567788999999999999987 8999999999999999776543322       


Q ss_pred             -------------------------------------------------cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          325 -------------------------------------------------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       325 -------------------------------------------------~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                                                                       .|...|.+++|+| ++.++++++.|+.|++|
T Consensus       789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw  867 (1249)
T 3sfz_A          789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELW  867 (1249)
T ss_dssp             -------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEE
T ss_pred             ccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEE
Confidence                                                             3567889999999 99999999999999999


Q ss_pred             eCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceee----------------------------e
Q 006424          356 GVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL----------------------------E  406 (645)
Q Consensus       356 d~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~----------------------------~  406 (645)
                      |+.++.... +.+|...|.+++|+|+|+++++++.||.|++|++.......                            .
T Consensus       868 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  947 (1249)
T 3sfz_A          868 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ  947 (1249)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEE
T ss_pred             EcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceE
Confidence            999877654 67899999999999999999999999999999976321100                            0


Q ss_pred             EEeec--cccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424          407 KVDFH--DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR  484 (645)
Q Consensus       407 ~~~~~--~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~  484 (645)
                      .....  .........+.+++|+|++ .++++|+.||.|++||............|...|.+++|+|++++|++++.||.
T Consensus       948 ~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~ 1026 (1249)
T 3sfz_A          948 LIAGKTGQIDYLPEAQVSCCCLSPHL-EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSV 1026 (1249)
T ss_dssp             EEEESSCCEEEECCSCEEEEEECTTS-SEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSB
T ss_pred             EEecCcceEEEcccCcEEEEEEcCCC-CEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCE
Confidence            00000  0001124679999999998 89999999999999998765555555568899999999999999999999999


Q ss_pred             EEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCC--ccCCCCccccCc
Q 006424          485 VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP--WIRDSERFSLGS  562 (645)
Q Consensus       485 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~  562 (645)
                      |++||+.++.....           ..+.+.+..++|+|++..+....+    ..+.+|+......  ....+...++++
T Consensus      1027 i~vwd~~~~~~~~~-----------~~~~~~v~~~~~~~~~~l~~~~~d----g~v~vwd~~~~~~~~~~~~~~~~v~~~ 1091 (1249)
T 3sfz_A         1027 IQVWNWQTGDYVFL-----------QAHQETVKDFRLLQDSRLLSWSFD----GTVKVWNVITGRIERDFTCHQGTVLSC 1091 (1249)
T ss_dssp             EEEEETTTTEEECC-----------BCCSSCEEEEEECSSSEEEEEESS----SEEEEEETTTTCCCEEEECCSSCCCCE
T ss_pred             EEEEECCCCceEEE-----------ecCCCcEEEEEEcCCCcEEEEECC----CcEEEEECCCCceeEEEcccCCcEEEE
Confidence            99999988743221           234456777888887765443332    2356676643332  456677889999


Q ss_pred             cccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCC--CccCCCCcceEEEEecCCCeEeEEEec
Q 006424          563 WFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDD--VRAISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       563 ~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                      +|+|||+++++++. |+.|++||+.++.           .......|...  .+++++ ||.+|+||+.||+|++|++.
T Consensus      1092 ~~s~d~~~l~s~s~-d~~v~iwd~~~~~-----------~~~~l~~h~~~v~~~~~s~-dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A         1092 AISSDATKFSSTSA-DKTAKIWSFDLLS-----------PLHELKGHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp             EECSSSSSCEEECC-SSCCCEECSSSSS-----------CSBCCCCCSSCEEEEEECS-SSSEEEEEETTSCCCEEESS
T ss_pred             EECCCCCEEEEEcC-CCcEEEEECCCcc-----------eeeeeccCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECC
Confidence            99999999999998 9999999998872           11122233332  345555 79999999999999999965

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.5e-39  Score=324.50  Aligned_cols=281  Identities=15%  Similarity=0.228  Sum_probs=232.7

Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      ...++|++|.+.|++++|+|++++|++|+.||+|++||+.+                                       
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~---------------------------------------   44 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET---------------------------------------   44 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT---------------------------------------
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC---------------------------------------
Confidence            35678999999999999999999999999999999999987                                       


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~  348 (645)
                            +..+..+.+|..+|.+++|+|++ +|++|+.|++|++||+.+++.+..+. |...|.+++|+| ++.+|++|+.
T Consensus        45 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~  117 (304)
T 2ynn_A           45 ------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSD  117 (304)
T ss_dssp             ------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEET
T ss_pred             ------CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEECC
Confidence                  34467788899999999999987 89999999999999999999888775 899999999999 9999999999


Q ss_pred             CCcEEEEeCCCCcE--EEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          349 DGKVRIWGVCEKRV--VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       349 dg~i~vwd~~~~~~--~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      |++|++||++++..  ..+.+|...|.+++|+| ++..|++|+.||.|++||++..........      .+...+..+.
T Consensus       118 D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~------~~~~~v~~~~  191 (304)
T 2ynn_A          118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT------GQERGVNYVD  191 (304)
T ss_dssp             TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC------CCTTCEEEEE
T ss_pred             CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc------CCcCcEEEEE
Confidence            99999999987643  34678999999999999 678999999999999999987654332211      1236788999


Q ss_pred             EcC--CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCC
Q 006424          426 FSR--DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS  503 (645)
Q Consensus       426 ~s~--~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~  503 (645)
                      |+|  ++ .+|++++.|+.|++||++..........|...|.+++|+|++++|++|+.||+|++||+.+++.....    
T Consensus       192 ~~~~~~~-~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~----  266 (304)
T 2ynn_A          192 YYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL----  266 (304)
T ss_dssp             ECCSTTC-CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE----
T ss_pred             EEEcCCC-CEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec----
Confidence            987  44 79999999999999999866555555568999999999999999999999999999999876422111    


Q ss_pred             cceeeeeecCCcEEEEecCCCCc--cccccCCC
Q 006424          504 VRSCEHFFSEGVSVAVQWPGIGT--EQKSLCSS  534 (645)
Q Consensus       504 ~~~~~~~~~~g~~~~v~~s~~~~--~l~~~~~~  534 (645)
                            -.+.+.+.+++|+|++.  ++++...+
T Consensus       267 ------~~~~~~~~~~~~~~~~~~~~~asg~~~  293 (304)
T 2ynn_A          267 ------NVGLERSWCIATHPTGRKNYIASGFDN  293 (304)
T ss_dssp             ------CCSSSSEEEEEECTTCGGGCEEEEETT
T ss_pred             ------cCCCccEEEEEECCCCCceEEEEecCC
Confidence                  11234566777777664  24444433

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.4e-39  Score=325.83  Aligned_cols=279  Identities=23%  Similarity=0.365  Sum_probs=226.9

Q ss_pred             ccccccccCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          193 SQEIQAHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspd----g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      .+.+++|.+.|++++|+|+    +.+|+||+.||+|++|++.....                                  
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~----------------------------------   70 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL----------------------------------   70 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE----------------------------------
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe----------------------------------
Confidence            4567899999999999985    56999999999999999875211                                  


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEE
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~  346 (645)
                               .....+.+|...|.+++|++++ .+++++.|++|++||+.+++.+..+. +...+.+++|+| ++++|++|
T Consensus        71 ---------~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g  140 (321)
T 3ow8_A           71 ---------DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATG  140 (321)
T ss_dssp             ---------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEE
T ss_pred             ---------eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEE
Confidence                     1234678999999999999987 89999999999999999999988875 777899999999 99999999


Q ss_pred             eCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          347 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      +.|+.|++||+++++... +..+...+.+++|+|+|++|++|+.||.|++||+++......   +.    .|..+|.+++
T Consensus       141 ~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~---~~----~h~~~v~~l~  213 (321)
T 3ow8_A          141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT---LE----GHAMPIRSLT  213 (321)
T ss_dssp             CTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---EC----CCSSCCCEEE
T ss_pred             cCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE---Ec----ccCCceeEEE
Confidence            999999999999876554 667788899999999999999999999999999987754321   22    2457899999


Q ss_pred             EcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcc
Q 006424          426 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR  505 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~  505 (645)
                      |+|++ .+|++++.|+.|++||++..........|...|.+++|+|++++|++++.||+|++||+.++...         
T Consensus       214 ~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~---------  283 (321)
T 3ow8_A          214 FSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV---------  283 (321)
T ss_dssp             ECTTS-CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE---------
T ss_pred             EcCCC-CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE---------
Confidence            99997 89999999999999998865555555568899999999999999999999999999999865211         


Q ss_pred             eeeeeecCCcEEEEecCCCCccccccCC
Q 006424          506 SCEHFFSEGVSVAVQWPGIGTEQKSLCS  533 (645)
Q Consensus       506 ~~~~~~~~g~~~~v~~s~~~~~l~~~~~  533 (645)
                       .....+.+.+.+++|+|++..|++.+.
T Consensus       284 -~~~~~h~~~v~~v~~s~~g~~l~s~~~  310 (321)
T 3ow8_A          284 -HTFFDHQDQVWGVKYNGNGSKIVSVGD  310 (321)
T ss_dssp             -EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             -EEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence             001123445556666655555554433

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-38  Score=323.44  Aligned_cols=303  Identities=18%  Similarity=0.284  Sum_probs=243.1

Q ss_pred             cccccccccccCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          190 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       190 ~~~~~~l~~H~~~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      +.+..+|.+|.+.|++++|+|++ ++|+||+.||+|++|++......                                 
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~---------------------------------   53 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK---------------------------------   53 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE---------------------------------
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc---------------------------------
Confidence            44567899999999999999965 89999999999999998642110                                 


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEE
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                             .+.++..+.+|...|.+++|+|++ +|++|+.|++|++||+.+++.+..+ +|...|.+++|+| ++.++++|
T Consensus        54 -------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~  125 (319)
T 3frx_A           54 -------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISG  125 (319)
T ss_dssp             -------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEE
T ss_pred             -------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEE
Confidence                   023467888999999999999997 8999999999999999999998877 4999999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccC------CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          347 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD------GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~------g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      +.|++|++||++......+.+|...|.++.|+|.      +..+++++.|+.|++||++.......   +    ..|...
T Consensus       126 s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---~----~~h~~~  198 (319)
T 3frx_A          126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD---F----IGHNSN  198 (319)
T ss_dssp             ETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE---E----CCCCSC
T ss_pred             eCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee---e----cCCCCc
Confidence            9999999999998888888999999999999985      45899999999999999987654322   2    234688


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ  500 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~  500 (645)
                      |.+++|+|+| .+|++++.|+.|++||+.......... +...|.+++|+|++.+|++++.++ +++|+++......   
T Consensus       199 v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~---  272 (319)
T 3frx_A          199 INTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD---  272 (319)
T ss_dssp             EEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEE---
T ss_pred             EEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeee---
Confidence            9999999998 899999999999999988655444433 456899999999999999988654 9999987541100   


Q ss_pred             cCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCc
Q 006424          501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK  580 (645)
Q Consensus       501 ~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~  580 (645)
                                         .+.+.-.                       .....+...+.+++|||||+++++++. |+.
T Consensus       273 -------------------~~~~~~~-----------------------~~~~~~~~~v~~~~~spdg~~l~sg~~-Dg~  309 (319)
T 3frx_A          273 -------------------DLRPEFA-----------------------GYSKAAEPHAVSLAWSADGQTLFAGYT-DNV  309 (319)
T ss_dssp             -------------------EECCCCT-----------------------TCCGGGCCCEEEEEECTTSSEEEEEET-TSC
T ss_pred             -------------------ccCcccc-----------------------ccccCcCcceeEEEECCCCCEEEEeec-Cce
Confidence                               0000000                       000112334566788888888888877 889


Q ss_pred             CCCCCCccC
Q 006424          581 LPLWDVTID  589 (645)
Q Consensus       581 i~iWd~~~~  589 (645)
                      |++||+.++
T Consensus       310 i~vWd~~t~  318 (319)
T 3frx_A          310 IRVWQVMTA  318 (319)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeec
Confidence            999998764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-40  Score=378.89  Aligned_cols=421  Identities=11%  Similarity=0.047  Sum_probs=285.7

Q ss_pred             hcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchhHhhh
Q 006424          100 EQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQ  179 (645)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (645)
                      .+|...|..++|+|++.. +++.+.            |+.++.|-                                   
T Consensus        14 ~gh~~~V~~lafspdg~~-lAsgs~------------Dg~I~lw~-----------------------------------   45 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNL-LAIATV------------TGEVHIYG-----------------------------------   45 (902)
T ss_dssp             EECSSCEEEEEEETTTTE-EEEEET------------TSEEEEEC-----------------------------------
T ss_pred             cCCCCCcEEEEECCCCCE-EEEEeC------------CCEEEEEe-----------------------------------
Confidence            478899999999999876 777776            55555540                                   


Q ss_pred             cccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEeccc
Q 006424          180 NKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKK  259 (645)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (645)
                      ...       ...... ..|.+.|++++|+| |++|++++.|++|++||+.++                           
T Consensus        46 ~~~-------~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~---------------------------   89 (902)
T 2oaj_A           46 QQQ-------VEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ---------------------------   89 (902)
T ss_dssp             STT-------CEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC---------------------------
T ss_pred             CCC-------cEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC---------------------------
Confidence            000       001111 24788999999999 889999999999999999873                           


Q ss_pred             CCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEE-----------E-ecC
Q 006424          260 KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-----------V-FDH  326 (645)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~-----------~-~~~  326 (645)
                                        +.+..+. |.+.|++++|+|++ ++++|+.||+|++||+++++...           . ..|
T Consensus        90 ------------------~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h  150 (902)
T 2oaj_A           90 ------------------KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR  150 (902)
T ss_dssp             ------------------SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred             ------------------cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence                              3344554 67899999999997 99999999999999999887641           1 137


Q ss_pred             CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-c------------------CCCeEEEEEccCCCEEEEE
Q 006424          327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-V------------------RDVISAICYIPDGKGFIVG  387 (645)
Q Consensus       327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~------------------~~~v~~l~~sp~g~~l~~g  387 (645)
                      ...|++++|+|.++..+++|+.|+.| +||+++++...... +                  ...|++++|+|+|++|++|
T Consensus       151 ~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg  229 (902)
T 2oaj_A          151 LSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI  229 (902)
T ss_dssp             CCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred             CCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE
Confidence            88999999999445789999999999 99999988765332 2                  4679999999999999999


Q ss_pred             ecCCeEEEEEecCCceeeeEEee---ccccc---------cCCCCeEEEEEc----CCCCcEEEEEEC------------
Q 006424          388 SITGTCHFYKASGNDLKLEKVDF---HDRKK---------TSGNKITGIQFS----RDESQRIMITSE------------  439 (645)
Q Consensus       388 ~~dg~i~iwd~~~~~~~~~~~~~---~~~~~---------~~~~~i~~i~~s----~~g~~~l~~~s~------------  439 (645)
                      +.||.|++||+++.+.... ..+   ..+..         .+...|++++|+    |++..++++|+.            
T Consensus       230 s~Dg~i~lWd~~~g~~~~~-r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~  308 (902)
T 2oaj_A          230 HEDNSLVFWDANSGHMIMA-RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMI  308 (902)
T ss_dssp             ETTCCEEEEETTTCCEEEE-ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEE
T ss_pred             ECCCeEEEEECCCCcEEEE-EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEE
Confidence            9999999999987654221 001   00000         122356666663    332234444443            


Q ss_pred             ----------------------------------------------------------------CCeEEEEECCcceeeE
Q 006424          440 ----------------------------------------------------------------DSKLRILDGVDVIHKF  455 (645)
Q Consensus       440 ----------------------------------------------------------------dg~I~iwd~~~~~~~~  455 (645)
                                                                                      |+.|++||+.+.....
T Consensus       309 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~  388 (902)
T 2oaj_A          309 DLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTD  388 (902)
T ss_dssp             EEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEEC
T ss_pred             ecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccc
Confidence                                                                            3444444432110000


Q ss_pred             e-------e----------------------------------cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          456 K-------G----------------------------------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       456 ~-------~----------------------------------~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      .       .                                  ..|...+.+++|+|++++|++|+.||+|++||+.++.
T Consensus       389 ~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~  468 (902)
T 2oaj_A          389 KASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGD  468 (902)
T ss_dssp             CGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCT
T ss_pred             ccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcc
Confidence            0       0                                  0112223344567899999999999999999999874


Q ss_pred             cCCCcccCCcceee-----eeecCCcEEEEecCCCCccccccCCCCccccCcccccccc---------------------
Q 006424          495 FPSSKQKNSVRSCE-----HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET---------------------  548 (645)
Q Consensus       495 ~~~~~~~~~~~~~~-----~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~---------------------  548 (645)
                      .....    .....     ...+.+.+.+++|+|++..|++.+.|+   .+++|+....                     
T Consensus       469 ~~~~~----~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dg---tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~  541 (902)
T 2oaj_A          469 IQDNA----SFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETG---DVVLFKYEVNQFYSVENRPESGDLEMNFRRF  541 (902)
T ss_dssp             TTTTB----CEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTS---CEEEEEEEECCC---------------CCSC
T ss_pred             ccCCc----eEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCc---EEEEEEecCccccCccccCCCcccceeeeec
Confidence            21110    00000     013456788888888888888777664   3456655322                     


Q ss_pred             --------------------------CCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHh
Q 006424          549 --------------------------APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRL  602 (645)
Q Consensus       549 --------------------------~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~  602 (645)
                                                ......|...+++++||||| ++++++. |++|++||+.+......    ....
T Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~-D~tv~lwd~~~~~~~~~----~~~~  615 (902)
T 2oaj_A          542 SLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYA-AGSLMLIDRRGPAIIYM----ENIR  615 (902)
T ss_dssp             CGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEET-TSEEEEEETTTTEEEEE----EEGG
T ss_pred             cccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeC-CCcEEEEECCCCeEEEE----eehh
Confidence                                      22345688899999999999 9999998 99999999876510000    0000


Q ss_pred             hhh-hccCCCCCccCC-----CC--cceEEEEecCCCeEeEEEe
Q 006424          603 QQQ-CLNNVDDVRAIS-----AT--WGLVIVTAGCDGMIKTFHN  638 (645)
Q Consensus       603 ~~~-~~~~~~~~~~~~-----~~--d~~~ivt~s~Dg~Iriw~~  638 (645)
                      ... .|......++|+     +.  ++.+|++|+.||+|++|++
T Consensus       616 ~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          616 EISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             GTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             HhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            010 222223345676     42  2589999999999999997

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.6e-38  Score=321.29  Aligned_cols=249  Identities=18%  Similarity=0.348  Sum_probs=212.4

Q ss_pred             cccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       190 ~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      ....++|++|.+.|++++|+|++++|++|+.||+|++||+.+                                      
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~--------------------------------------   86 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT--------------------------------------   86 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--------------------------------------
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--------------------------------------
Confidence            345677999999999999999999999999999999999886                                      


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe----EEEEe-cCCCcEEEEEEeeCCCCEE
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVF-DHHNYVTCVQFNPIDDNYF  343 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~----~~~~~-~~~~~v~~l~~~p~~~~~l  343 (645)
                             ...+..+..|...|.+++|+|++ +|++|+.|+.|++||+.++.    ....+ +|...|.++.|++ ++ .+
T Consensus        87 -------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l  157 (340)
T 1got_B           87 -------TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DN-QI  157 (340)
T ss_dssp             -------CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TT-EE
T ss_pred             -------CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC-CC-cE
Confidence                   44566778899999999999997 89999999999999997653    33333 5899999999998 54 58


Q ss_pred             EEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424          344 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       344 ~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      ++++.|++|++||+++++... +.+|...|.+++|+|+++++++|+.||.|++||+++......   +.    .|...|+
T Consensus       158 ~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~---~~----~h~~~v~  230 (340)
T 1got_B          158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT---FT----GHESDIN  230 (340)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE---EC----CCSSCEE
T ss_pred             EEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE---Ec----CCcCCEE
Confidence            999999999999999887655 667999999999999999999999999999999987764322   22    2457899


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEECCcceee--EeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHK--FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~--~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +++|+|++ .+|++++.|+.|++||++.....  +....+...|.+++|+|++++|++|+.||.|++||+.++
T Consensus       231 ~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~  302 (340)
T 1got_B          231 AICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             EEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence            99999997 89999999999999998754433  322334457999999999999999999999999998765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.9e-39  Score=329.85  Aligned_cols=251  Identities=17%  Similarity=0.273  Sum_probs=201.0

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeC------CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGE------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      ..+|.+.|++++|||||++||+|+.      |+.|++|+..++...                                  
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~----------------------------------   83 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN----------------------------------   83 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C----------------------------------
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc----------------------------------
Confidence            3479999999999999999999998      677888887653211                                  


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEE-----ecCCCcEEEEEEeeCCCCEEE
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~-----~~~~~~v~~l~~~p~~~~~l~  344 (645)
                             ........+|...|.+++|+|++.+++++.||+|++||+.+++....     .+|...|++++|+| ++++|+
T Consensus        84 -------~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~  155 (357)
T 4g56_B           84 -------ESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAV  155 (357)
T ss_dssp             -------GGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEE
T ss_pred             -------eeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEE
Confidence                   12233455789999999999999889999999999999988765432     35889999999999 999999


Q ss_pred             EEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424          345 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       345 s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      +|+.|+.|++||+++++... +..|...|++++|+|++. ++++++.||.|++||+++...... ..    ...+...++
T Consensus       156 sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~-~~----~~~~~~~v~  230 (357)
T 4g56_B          156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR-ID----FCASDTIPT  230 (357)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB-CC----CTTCCSCEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee-ee----ecccccccc
Confidence            99999999999999988665 667899999999999875 789999999999999987664322 11    122346799


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC-CEEEEEeCCccEEEEeCCCC
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~-~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +++|+|++..++++|+.|+.|++||++..........|...|++++|+|++ ++|++|+.||+|+|||++++
T Consensus       231 ~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          231 SVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             EEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred             chhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999876899999999999999988655444555588999999999987 57999999999999998765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=321.10  Aligned_cols=298  Identities=16%  Similarity=0.267  Sum_probs=246.4

Q ss_pred             ccccccchhhhhhcccccceEEeeecccc---CCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCC
Q 006424           88 MDSEANCMVDELEQDQMNECVVTLEGESN---GFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRK  164 (645)
Q Consensus        88 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (645)
                      +.+....+++.+.+|.+.|+.++|+++..   ..+++.+.            |+.++.|-                    
T Consensus        17 ~~~~~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~------------D~~v~vW~--------------------   64 (321)
T 3ow8_A           17 GTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSL------------DDLVKVWK--------------------   64 (321)
T ss_dssp             ----CEEEEEETTSSSSCEEEEEEC-------CEEEEEET------------TSCEEEEE--------------------
T ss_pred             hhhhhhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcC------------CCCEEEEE--------------------
Confidence            44666778889999999999999998632   22666666            66665550                    


Q ss_pred             CCCCCCccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCC
Q 006424          165 PNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG  244 (645)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~  244 (645)
                                     -..     ........+.+|...|++++|+|++.++++|+.|++|++||+.+             
T Consensus        65 ---------------~~~-----~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~-------------  111 (321)
T 3ow8_A           65 ---------------WRD-----ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN-------------  111 (321)
T ss_dssp             ---------------EET-----TEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------------
T ss_pred             ---------------CCC-----CCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC-------------
Confidence                           000     01113345789999999999999999999999999999999987             


Q ss_pred             cccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE
Q 006424          245 FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV  323 (645)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~  323 (645)
                                                      ++.+..+..|...+.+++|+|++ +|++|+.||.|++||+++++....
T Consensus       112 --------------------------------~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~  159 (321)
T 3ow8_A          112 --------------------------------GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS  159 (321)
T ss_dssp             --------------------------------TEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred             --------------------------------CCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence                                            34456777888999999999997 899999999999999999988777


Q ss_pred             ec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCC
Q 006424          324 FD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN  401 (645)
Q Consensus       324 ~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~  401 (645)
                      +. +...|.+++|+| ++++|++|+.|+.|++||+++++.+. +..|...|.+++|+|++++|++|+.||.|++||++..
T Consensus       160 ~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~  238 (321)
T 3ow8_A          160 LDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA  238 (321)
T ss_dssp             EECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred             ecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence            74 778899999999 99999999999999999999987765 6678999999999999999999999999999999876


Q ss_pred             ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC
Q 006424          402 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD  481 (645)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~  481 (645)
                      .....   +    ..|...|.+++|+|++ .+|++++.|+.|++||+.+.........|...|.+++|+|++++|++++.
T Consensus       239 ~~~~~---~----~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~  310 (321)
T 3ow8_A          239 NLAGT---L----SGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD  310 (321)
T ss_dssp             CEEEE---E----CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceeEE---E----cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence            64321   2    2345789999999998 79999999999999999876655555668999999999999999999999


Q ss_pred             CccEEEEeCC
Q 006424          482 DCRVYVWNYD  491 (645)
Q Consensus       482 dg~I~iwd~~  491 (645)
                      ||+|++||+.
T Consensus       311 d~~i~vwd~p  320 (321)
T 3ow8_A          311 DQEIHIYDCP  320 (321)
T ss_dssp             TCCEEEEECC
T ss_pred             CCeEEEEeCC
Confidence            9999999964

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.9e-38  Score=323.05  Aligned_cols=291  Identities=20%  Similarity=0.331  Sum_probs=244.5

Q ss_pred             hhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchh
Q 006424           96 VDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKM  175 (645)
Q Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (645)
                      ..+|.+|...|+.++|++++.. +++++.            |+.++.|-                               
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~-l~s~s~------------Dg~v~iWd-------------------------------   83 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRL-LLSASQ------------DGKLIIWD-------------------------------   83 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSE-EEEEET------------TTEEEEEE-------------------------------
T ss_pred             heeecCCCCceEEEEECCCCCE-EEEEeC------------CCcEEEEE-------------------------------
Confidence            4578899999999999999877 777777            66666660                               


Q ss_pred             HhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEE
Q 006424          176 EVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK  255 (645)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (645)
                                 .........+..|.+.|.+++|+|+|++|++|+.|+.|++|++.+...                     
T Consensus        84 -----------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~---------------------  131 (340)
T 1got_B           84 -----------SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG---------------------  131 (340)
T ss_dssp             -----------TTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB---------------------
T ss_pred             -----------CCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC---------------------
Confidence                       000012344678999999999999999999999999999999976321                     


Q ss_pred             ecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEE
Q 006424          256 FGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ  334 (645)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~  334 (645)
                                          .......+.+|.+.|.++.|++++.+++++.|++|++||+.+++.+..+. |...|.+++
T Consensus       132 --------------------~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~  191 (340)
T 1got_B          132 --------------------NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS  191 (340)
T ss_dssp             --------------------SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             --------------------cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEE
Confidence                                01234567899999999999999999999999999999999999988885 889999999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc
Q 006424          335 FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR  413 (645)
Q Consensus       335 ~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  413 (645)
                      |+| +++++++|+.|+.|++||++++.... +..|...|++++|+|++++|++|+.||.|++||++....... ...   
T Consensus       192 ~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~---  266 (340)
T 1got_B          192 LAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSH---  266 (340)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECC---
T ss_pred             ECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE-Ecc---
Confidence            999 99999999999999999999887654 677999999999999999999999999999999987654321 111   


Q ss_pred             cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       414 ~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                       ..+...|++++|+|+| .++++|+.|+.|++||............|...|.+++|+|++.+|++|+.||.|+|||
T Consensus       267 -~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          267 -DNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -TTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -CCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence             1123579999999998 8999999999999999875544444455899999999999999999999999999997

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.8e-38  Score=377.50  Aligned_cols=382  Identities=15%  Similarity=0.238  Sum_probs=301.5

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      ..+.+|.+.|++++|+|+|++|++|+.||+|++||+.+                                          
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~------------------------------------------  646 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET------------------------------------------  646 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT------------------------------------------
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC------------------------------------------
Confidence            35679999999999999999999999999999999987                                          


Q ss_pred             eccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeC-CCCEEEEEeCCC
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI-DDNYFISGSIDG  350 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~-~~~~l~s~s~dg  350 (645)
                         +..+..+.+|.+.|.+++|+|++ +|++|+.|++|++||+.+++.+..+. |...|.+++|+|. ++.++++|+.|+
T Consensus       647 ---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~  723 (1249)
T 3sfz_A          647 ---GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF  723 (1249)
T ss_dssp             ---CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred             ---CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence               45567888999999999999997 99999999999999999999988884 8899999999983 334899999999


Q ss_pred             cEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe--------------------
Q 006424          351 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD--------------------  409 (645)
Q Consensus       351 ~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~--------------------  409 (645)
                      .|++||+++++... +.+|...|++++|+|+++++++++.||.|++||+.+.........                    
T Consensus       724 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  803 (1249)
T 3sfz_A          724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC  803 (1249)
T ss_dssp             CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred             eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence            99999999987654 678999999999999999999999999999999976543211100                    


Q ss_pred             ----------------------------eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCC
Q 006424          410 ----------------------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS  461 (645)
Q Consensus       410 ----------------------------~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~  461 (645)
                                                  .......|...+.+++|+|++ .++++++.|+.|++||............|.
T Consensus       804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~  882 (1249)
T 3sfz_A          804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKVADCRGHL  882 (1249)
T ss_dssp             CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEEEEEECCCS
T ss_pred             EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeeecCCCc
Confidence                                        000011456789999999997 899999999999999998776666666799


Q ss_pred             CCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC---------------------------CcceeeeeecCC
Q 006424          462 GSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN---------------------------SVRSCEHFFSEG  514 (645)
Q Consensus       462 ~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~---------------------------~~~~~~~~~~~g  514 (645)
                      ..|.+++|+|++++|++++.||.|++||+.+..........                           .........+..
T Consensus       883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  962 (1249)
T 3sfz_A          883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA  962 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC
Confidence            99999999999999999999999999997643211100000                           000111233456


Q ss_pred             cEEEEecCCCCccccccCCCCccccCccccccccCC--ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCC
Q 006424          515 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP--WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDG  592 (645)
Q Consensus       515 ~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~  592 (645)
                      .+.+++|+|++..++..+.++.   +.+|+......  ....|...+++++|+|||+++++++. |+.|++||+.++.  
T Consensus       963 ~i~~~~~sp~g~~l~~g~~~g~---i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-dg~i~vwd~~~~~-- 1036 (1249)
T 3sfz_A          963 QVSCCCLSPHLEYVAFGDEDGA---IKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQTGD-- 1036 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSC---CEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECS-SSBEEEEETTTTE--
T ss_pred             cEEEEEEcCCCCEEEEEcCCCC---EEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcC-CCEEEEEECCCCc--
Confidence            7889999999999987776643   45666543332  45567888999999999999999998 9999999998872  


Q ss_pred             CcCChhhhHhhhhhccCCCCC--ccCCCCcceEEEEecCCCeEeEEEec
Q 006424          593 YCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                              ...  ...+...+  ..+++  +..+++++.||+|++|+..
T Consensus      1037 --------~~~--~~~~~~~v~~~~~~~--~~~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A         1037 --------YVF--LQAHQETVKDFRLLQ--DSRLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp             --------EEC--CBCCSSCEEEEEECS--SSEEEEEESSSEEEEEETT
T ss_pred             --------eEE--EecCCCcEEEEEEcC--CCcEEEEECCCcEEEEECC
Confidence                    111  11222222  33444  4458899999999999963

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.6e-38  Score=323.92  Aligned_cols=256  Identities=16%  Similarity=0.251  Sum_probs=201.9

Q ss_pred             ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      ..|...|.+++|+|||++|++++ |+++++||......     ..                             ......
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~-----~~-----------------------------~~~~~~   71 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLF-----KD-----------------------------PCAAPN   71 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEE-----SS-----------------------------GGGTTC
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeee-----cc-----------------------------ccccCC
Confidence            35778899999999999999888 77889987432000     00                             000000


Q ss_pred             CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-----cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-----DHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-----~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                      .........|...|.+++|+|++.|++|+.||+|++||+++++.+..+     +|...|++++|+| ++++|++|+.|++
T Consensus        72 ~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~  150 (344)
T 4gqb_B           72 EGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDIC  150 (344)
T ss_dssp             GGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred             cceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCe
Confidence            111222334678899999999999999999999999999988754432     5899999999999 9999999999999


Q ss_pred             EEEEeCCCCcEEE-eeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          352 VRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       352 i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      |++||+++++++. +.+|...|++++|+|++. ++++++.||.|++||+++.+.... +...    .+...+.+++|+|+
T Consensus       151 i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~----~~~~~~~~~~~~p~  225 (344)
T 4gqb_B          151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ-IGCS----APGYLPTSLAWHPQ  225 (344)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE-CC--------CCCEEEEEECSS
T ss_pred             EEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee-eecc----eeeccceeeeecCC
Confidence            9999999988765 677999999999999885 788999999999999988765332 1111    22467899999998


Q ss_pred             CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC-CEEEEEeCCccEEEEeCCCC
Q 006424          430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~-~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +..++++|+.|+.|++||++..........|...|++++|+|++ ++|++|+.||+|+|||+.++
T Consensus       226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            76899999999999999988554444445588999999999998 58999999999999998765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-37  Score=321.42  Aligned_cols=249  Identities=16%  Similarity=0.279  Sum_probs=211.3

Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      ...++|++|.+.|++++|+|++++|+||+.||+|++||..+                                       
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~---------------------------------------   95 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT---------------------------------------   95 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---------------------------------------
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC---------------------------------------
Confidence            35677999999999999999999999999999999999876                                       


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe------EEEE-ecCCCcEEEEEEeeCCCCE
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ------CLNV-FDHHNYVTCVQFNPIDDNY  342 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~------~~~~-~~~~~~v~~l~~~p~~~~~  342 (645)
                            ......+..|...|.+++|+|++ .+++|+.|+.+++|++....      .... ..|...|.+++|+| ++..
T Consensus        96 ------~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~  168 (354)
T 2pbi_B           96 ------TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQ  168 (354)
T ss_dssp             ------CCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSE
T ss_pred             ------CCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCE
Confidence                  33456677788999999999998 89999999999999986431      2222 35899999999999 8999


Q ss_pred             EEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEcc--CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424          343 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  419 (645)
Q Consensus       343 l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp--~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  419 (645)
                      |++++.|++|++||+++++... +.+|...|.+++|+|  +|++|++|+.||.|++||+++......   +    ..|..
T Consensus       169 l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~---~----~~h~~  241 (354)
T 2pbi_B          169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA---F----ETHES  241 (354)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE---E----CCCSS
T ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE---e----cCCCC
Confidence            9999999999999999987664 678999999999988  578999999999999999998764322   2    22457


Q ss_pred             CeEEEEEcCCCCcEEEEEECCCeEEEEECCccee--eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          420 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       420 ~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~--~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .|.+++|+|++ .++++++.|+.|++||++....  .+....+...+.+++|+|++++|++|+.|+.|++||+.++
T Consensus       242 ~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~  316 (354)
T 2pbi_B          242 DVNSVRYYPSG-DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG  316 (354)
T ss_dssp             CEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence            89999999997 8999999999999999875433  3333334457899999999999999999999999999765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-39  Score=368.19  Aligned_cols=390  Identities=12%  Similarity=0.050  Sum_probs=274.0

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      ..+|.+.|++++|+|++++||+|+.||+|+||+..+.                                           
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-------------------------------------------   49 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-------------------------------------------   49 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-------------------------------------------
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-------------------------------------------
Confidence            3489999999999999999999999999999997652                                           


Q ss_pred             cCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                        ..... ..|...|.+++|+|+.+|++++.|++|++||+.+++++..+.|...|++++|+| +++++++|+.||.|++|
T Consensus        50 --~~~~~-~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp-~g~~l~sgs~dg~V~lw  125 (902)
T 2oaj_A           50 --EVVIK-LEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDA-SLDWMLIGLQNGSMIVY  125 (902)
T ss_dssp             --EEEEE-CSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCT-TCSEEEEEETTSCEEEE
T ss_pred             --EEEEE-cCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECC-CCCEEEEEcCCCcEEEE
Confidence              11222 347889999999994479999999999999999999998888889999999999 99999999999999999


Q ss_pred             eCCCCcEEE------------eeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeecc----------
Q 006424          356 GVCEKRVVD------------WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHD----------  412 (645)
Q Consensus       356 d~~~~~~~~------------~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~----------  412 (645)
                      |++++++..            ..+|...|.+++|+|+ +..+++|+.||.| +||+++..... .+..+.          
T Consensus       126 d~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~-~~~~~~~~g~~~~~~~  203 (902)
T 2oaj_A          126 DIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ-SFIYELPPFAPGGDFS  203 (902)
T ss_dssp             ETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEE-EECCCBCTTCCCSTTC
T ss_pred             ECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEE-EEecccCCcCCCcccc
Confidence            999887642            2457889999999996 5789999999999 99998875432 222220          


Q ss_pred             --ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEe-------ec-----------CCCCCeEEEEEec-
Q 006424          413 --RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK-------GL-----------PKSGSQMSASFTT-  471 (645)
Q Consensus       413 --~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~-------~~-----------~~~~~i~~v~~sp-  471 (645)
                        ....|...|++++|+|+| .+|++++.|+.|++||+++......       .+           .+...|.+++|++ 
T Consensus       204 ~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~  282 (902)
T 2oaj_A          204 EKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCE  282 (902)
T ss_dssp             CCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEEC
T ss_pred             cccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEec
Confidence              012234679999999997 8999999999999999875332221       11           1345799999964 


Q ss_pred             ---CC-CEEEEEeCC-----ccEEEEeCC---------------------------------------------------
Q 006424          472 ---TG-KHIISIGDD-----CRVYVWNYD---------------------------------------------------  491 (645)
Q Consensus       472 ---~~-~~l~t~s~d-----g~I~iwd~~---------------------------------------------------  491 (645)
                         ++ .+|++|+.|     +.+++|++.                                                   
T Consensus       283 ~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~  362 (902)
T 2oaj_A          283 NNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCH  362 (902)
T ss_dssp             SSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTB
T ss_pred             CCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCC
Confidence               33 466777554     267777631                                                   


Q ss_pred             --------------------CCCcCCCc---c-----cCCcceeeeee-----------------------cCCcEEEEe
Q 006424          492 --------------------ELCFPSSK---Q-----KNSVRSCEHFF-----------------------SEGVSVAVQ  520 (645)
Q Consensus       492 --------------------~~~~~~~~---~-----~~~~~~~~~~~-----------------------~~g~~~~v~  520 (645)
                                          ++......   +     ......+..+.                       +...+..++
T Consensus       363 d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~  442 (902)
T 2oaj_A          363 NPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKL  442 (902)
T ss_dssp             SCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCC
T ss_pred             CceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccc
Confidence                                11000000   0     00000011110                       011122345


Q ss_pred             cCCCCccccccCCCCccccCccccccccCCcc-------------CCCCccccCccccCCCCCCcCCCCCCCcCCCCCCc
Q 006424          521 WPGIGTEQKSLCSSSLRDCSQKWDNLETAPWI-------------RDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT  587 (645)
Q Consensus       521 ~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~-------------~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~  587 (645)
                      |+|++..|++.+.|   ..+++|+........             .++...+.+++|||||+++++++. |++|++|++.
T Consensus       443 ~spdg~~laSgs~D---gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~-DgtV~lwd~~  518 (902)
T 2oaj_A          443 PAEYGTAFITGHSN---GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE-TGDVVLFKYE  518 (902)
T ss_dssp             CCSEEEEEEEEETT---SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET-TSCEEEEEEE
T ss_pred             ccccCcEEEEecCC---CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec-CcEEEEEEec
Confidence            67788888877776   447788875442211             156778999999999999999998 9999999998


Q ss_pred             cCCCCCc---CC-----hhh--------------------------hHhhhhhccCCC--CCccCCCCcceEEEEecCCC
Q 006424          588 IDSDGYC---QD-----PQQ--------------------------QRLQQQCLNNVD--DVRAISATWGLVIVTAGCDG  631 (645)
Q Consensus       588 ~~~~~~~---~~-----~~~--------------------------~~~~~~~~~~~~--~~~~~~~~d~~~ivt~s~Dg  631 (645)
                      +++....   ..     ..+                          ..+......|.+  ..++|++ || +||+|+.||
T Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~  596 (902)
T 2oaj_A          519 VNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAG  596 (902)
T ss_dssp             ECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTS
T ss_pred             CccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCC
Confidence            7621000   00     000                          000111122333  3355555 79 999999999


Q ss_pred             eEeEEEecCc
Q 006424          632 MIKTFHNYGL  641 (645)
Q Consensus       632 ~Iriw~~~g~  641 (645)
                      +||+|++.+-
T Consensus       597 tv~lwd~~~~  606 (902)
T 2oaj_A          597 SLMLIDRRGP  606 (902)
T ss_dssp             EEEEEETTTT
T ss_pred             cEEEEECCCC
Confidence            9999998764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.9e-39  Score=334.42  Aligned_cols=299  Identities=18%  Similarity=0.333  Sum_probs=240.5

Q ss_pred             ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      .....++|++|.+.|++++|+|++++|+||+.||+|++||+.+                                     
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-------------------------------------   97 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT-------------------------------------   97 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT-------------------------------------
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------------------------------------
Confidence            3446678999999999999999999999999999999999986                                     


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe-------EEEEe-cCCCcEEEEEEeeCC
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-------CLNVF-DHHNYVTCVQFNPID  339 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~-------~~~~~-~~~~~v~~l~~~p~~  339 (645)
                              ......+.+|...|.+++|+|++ +|++|+.|+.|++||+.+..       ....+ +|...|.++.|.|.+
T Consensus        98 --------~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~  169 (380)
T 3iz6_a           98 --------SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ  169 (380)
T ss_dssp             --------TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS
T ss_pred             --------CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCC
Confidence                    34467788899999999999998 89999999999999986532       12223 588899999999955


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcEEEe------eccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeecc
Q 006424          340 DNYFISGSIDGKVRIWGVCEKRVVDW------ADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  412 (645)
Q Consensus       340 ~~~l~s~s~dg~i~vwd~~~~~~~~~------~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  412 (645)
                      +..|++|+.|++|++||+++++....      .+|...|.+++|++ +++++++|+.||.|++||++........+    
T Consensus       170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~----  245 (380)
T 3iz6_a          170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY----  245 (380)
T ss_dssp             SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE----
T ss_pred             CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE----
Confidence            67899999999999999999887653      46788999999987 88999999999999999998543332222    


Q ss_pred             ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceee--EeecC-----CCCCeEEEEEecCCCEEEEEeCCccE
Q 006424          413 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK--FKGLP-----KSGSQMSASFTTTGKHIISIGDDCRV  485 (645)
Q Consensus       413 ~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~--~~~~~-----~~~~i~~v~~sp~~~~l~t~s~dg~I  485 (645)
                        ..|...|.+++|+|++ .+|++++.|++|++||++.....  +....     +...|.+++|+|+|++|++|+.||.|
T Consensus       246 --~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  322 (380)
T 3iz6_a          246 --HGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC  322 (380)
T ss_dssp             --CCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred             --CCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE
Confidence              2245789999999998 89999999999999998854433  22211     12348999999999999999999999


Q ss_pred             EEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCcccc
Q 006424          486 YVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFS  565 (645)
Q Consensus       486 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs  565 (645)
                      ++||+..++..                    ..+.                             .....|...+.+++|+
T Consensus       323 ~vwd~~~~~~~--------------------~~~~-----------------------------~~~~~h~~~v~~l~~s  353 (380)
T 3iz6_a          323 YVWDTLLAEMV--------------------LNLG-----------------------------TLQNSHEGRISCLGLS  353 (380)
T ss_dssp             EEEETTTCCEE--------------------EEEC-----------------------------CSCSSCCCCCCEEEEC
T ss_pred             EEEECCCCceE--------------------EEEe-----------------------------cccCCCCCceEEEEEC
Confidence            99998755210                    0000                             0012345567788899


Q ss_pred             CCCCCCcCCCCCCCcCCCCCCccC
Q 006424          566 NDGPCRGSATWPAEKLPLWDVTID  589 (645)
Q Consensus       566 ~dg~~l~s~s~~d~~i~iWd~~~~  589 (645)
                      |||++++++++ |+.|++|++...
T Consensus       354 ~dg~~l~sgs~-D~~i~iW~~~~~  376 (380)
T 3iz6_a          354 SDGSALCTGSW-DKNLKIWAFSGH  376 (380)
T ss_dssp             SSSSEEEEECT-TSCEEEEECCSS
T ss_pred             CCCCEEEEeeC-CCCEEEEecCCC
Confidence            99999999888 899999998765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=318.16  Aligned_cols=253  Identities=23%  Similarity=0.367  Sum_probs=208.8

Q ss_pred             ccccccccccC-cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          191 YTSQEIQAHKG-CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       191 ~~~~~l~~H~~-~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      ...+++.+|.+ .|++++|+|+|++||+|+.||+|+|||+.++....                                 
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~---------------------------------   52 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC---------------------------------   52 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE---------------------------------
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee---------------------------------
Confidence            35677889998 99999999999999999999999999987632110                                 


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe--EEEEe-cCCCcEEEEEEeeCCCCEEEE
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~--~~~~~-~~~~~v~~l~~~p~~~~~l~s  345 (645)
                               ......+|...|.+++|+|++ +|++|+.|++|++||+..+.  ++..+ +|...|.+++|+| ++++|++
T Consensus        53 ---------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s  122 (345)
T 3fm0_A           53 ---------KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLAT  122 (345)
T ss_dssp             ---------EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred             ---------eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEE
Confidence                     112235899999999999997 89999999999999998764  45555 4899999999999 9999999


Q ss_pred             EeCCCcEEEEeCCCCc----EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424          346 GSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  421 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~----~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  421 (645)
                      |+.|++|++||++++.    ...+..|...|.+++|+|++++|++|+.|+.|++||.+....... ..+    ..|...|
T Consensus       123 ~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~-~~~----~~h~~~v  197 (345)
T 3fm0_A          123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC-ATL----EGHESTV  197 (345)
T ss_dssp             EETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEE-EEE----CCCSSCE
T ss_pred             EECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEE-EEe----cCCCCce
Confidence            9999999999998753    234667899999999999999999999999999999987653211 112    2346889


Q ss_pred             EEEEEcCCCCcEEEEEECCCeEEEEECCcc-----------------eeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424          422 TGIQFSRDESQRIMITSEDSKLRILDGVDV-----------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR  484 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-----------------~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~  484 (645)
                      .+++|+|+| .+|++++.|+.|++||....                 ...+. ..|...|.+++|+|++..|++++.|+.
T Consensus       198 ~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~  275 (345)
T 3fm0_A          198 WSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDA  275 (345)
T ss_dssp             EEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSC
T ss_pred             EEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCe
Confidence            999999998 89999999999999995211                 11111 127789999999999999999999999


Q ss_pred             EEEEeCCCC
Q 006424          485 VYVWNYDEL  493 (645)
Q Consensus       485 I~iwd~~~~  493 (645)
                      |++|+....
T Consensus       276 i~vw~~~~~  284 (345)
T 3fm0_A          276 IRVFQEDPN  284 (345)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEeCCC
Confidence            999998765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.7e-38  Score=360.32  Aligned_cols=251  Identities=16%  Similarity=0.275  Sum_probs=220.0

Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      ...+.+.+|.+.|++++|+|+|++||+|+.||.|++||+.+                                       
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~---------------------------------------   44 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET---------------------------------------   44 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT---------------------------------------
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC---------------------------------------
Confidence            35677899999999999999999999999999999999987                                       


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~  348 (645)
                            +..+..+.+|...|.+++|+|++ +|++++.||.|++||+.+++.+..+. |...|++++|+| ++.+|++++.
T Consensus        45 ------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  117 (814)
T 3mkq_A           45 ------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSD  117 (814)
T ss_dssp             ------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEET
T ss_pred             ------CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcC
Confidence                  44567788999999999999987 89999999999999999999888875 899999999999 9999999999


Q ss_pred             CCcEEEEeCCCC-cE-EEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          349 DGKVRIWGVCEK-RV-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       349 dg~i~vwd~~~~-~~-~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      ||.|++||+.++ .. ..+..|...|.+++|+| +++.+++++.||.|++||+.......... .+     +...+.+++
T Consensus       118 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~-----~~~~v~~~~  191 (814)
T 3mkq_A          118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TG-----QERGVNYVD  191 (814)
T ss_dssp             TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE-CC-----CTTCCCEEE
T ss_pred             CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe-cC-----CCCCEEEEE
Confidence            999999999876 33 34677899999999999 88999999999999999998765433221 11     236799999


Q ss_pred             EcC--CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          426 FSR--DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       426 ~s~--~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      |+|  ++ .++++++.||.|++||............|...|.+++|+|++++|++++.||.|++||+.++.
T Consensus       192 ~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          192 YYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             ECCSTTC-CEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS
T ss_pred             EEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            999  76 799999999999999988655555555588899999999999999999999999999998764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.7e-37  Score=316.20  Aligned_cols=309  Identities=18%  Similarity=0.233  Sum_probs=238.2

Q ss_pred             ccccccccccCcEEEEEE-----CC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcc
Q 006424          191 YTSQEIQAHKGCIWTLKF-----SP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV  264 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~f-----sp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (645)
                      ....+|++|.+.|++++|     ++ ++++|+||+.||+|++||+.+.....                            
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~----------------------------   63 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG----------------------------   63 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS----------------------------
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc----------------------------
Confidence            356679999999999999     77 89999999999999999987532100                            


Q ss_pred             eeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCE
Q 006424          265 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY  342 (645)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~  342 (645)
                                ..+.+...+.+|...|.+++|+|++ ++++|+.|++|++||+++++.+..+. |...|.+++|+| ++++
T Consensus        64 ----------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~  132 (343)
T 2xzm_R           64 ----------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQ  132 (343)
T ss_dssp             ----------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STTE
T ss_pred             ----------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCCE
Confidence                      0023356788999999999999987 89999999999999999999888774 999999999999 9999


Q ss_pred             EEEEeCCCcEEEEeCCCCcEEEee---ccCCCeEEEEEccCC----------CEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424          343 FISGSIDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDG----------KGFIVGSITGTCHFYKASGNDLKLEKVD  409 (645)
Q Consensus       343 l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~v~~l~~sp~g----------~~l~~g~~dg~i~iwd~~~~~~~~~~~~  409 (645)
                      |++++.|++|++||+.........   .|...|.+++|+|++          .++++++.||.|++||... .. ...  
T Consensus       133 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~-~~~--  208 (343)
T 2xzm_R          133 ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI-RYT--  208 (343)
T ss_dssp             EEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE-EEE--
T ss_pred             EEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce-eEE--
Confidence            999999999999999865555443   688899999999987          7899999999999999432 21 111  


Q ss_pred             eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          410 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       410 ~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                      +.    .|...|.+++|+|+| .+|++++.|+.|++||+...........+...|.+++|+|++.+++++ .|+.|++||
T Consensus       209 ~~----~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~  282 (343)
T 2xzm_R          209 FK----AHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFN  282 (343)
T ss_dssp             EE----CCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEE
T ss_pred             Ec----CccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEE
Confidence            22    245789999999998 899999999999999985322211222245679999999999888755 578899999


Q ss_pred             CCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCC
Q 006424          490 YDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGP  569 (645)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~  569 (645)
                      +.+.....                  +..  +.+..  +.                  ......++...+.+++|+|+|+
T Consensus       283 ~~~~~~~~------------------~~~--~~~~~--~~------------------~~~~~~~~~~~v~~~~~sp~g~  322 (343)
T 2xzm_R          283 LMTQSKAP------------------VCT--IEAEP--IT------------------KAEGQKGKNPQCTSLAWNALGK  322 (343)
T ss_dssp             SSSCCSCS------------------EEE--CCCCS--GG------------------GBTTBCCSCCCEEEEEECSSSC
T ss_pred             eCCCCCCc------------------eEE--eecCc--ch------------------hhhhhcCCCCceEEEEECCCCC
Confidence            97653211                  000  00000  00                  0001223455678889999999


Q ss_pred             CCcCCCCCCCcCCCCCCccC
Q 006424          570 CRGSATWPAEKLPLWDVTID  589 (645)
Q Consensus       570 ~l~s~s~~d~~i~iWd~~~~  589 (645)
                      ++++++. |+.|++|++.++
T Consensus       323 ~l~sg~~-Dg~v~~w~~~~g  341 (343)
T 2xzm_R          323 KLFAGFT-DGVIRTFSFETS  341 (343)
T ss_dssp             CEEEEET-TSEEEEEEEEEE
T ss_pred             eEEEecC-CceEEEEEEEcc
Confidence            9998888 899999998765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.5e-38  Score=331.12  Aligned_cols=286  Identities=22%  Similarity=0.330  Sum_probs=242.8

Q ss_pred             hhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchhH
Q 006424           97 DELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKME  176 (645)
Q Consensus        97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (645)
                      ..|.+|...|..+.|+|++.. +++.+.            |+.++.|-                                
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~-l~s~s~------------Dg~i~vwd--------------------------------  136 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSV-MVSASE------------DATIKVWD--------------------------------  136 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSE-EEEEES------------SSCEEEEE--------------------------------
T ss_pred             EeecccCCcEEEEEEcCCCCE-EEEEeC------------CCeEEEEE--------------------------------
Confidence            467899999999999998776 777777            66655550                                


Q ss_pred             hhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEe
Q 006424          177 VKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKF  256 (645)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (645)
                                .......+++++|.+.|++++|+|++++|++|+.||+|++||+.+                         
T Consensus       137 ----------~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~-------------------------  181 (410)
T 1vyh_C          137 ----------YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-------------------------  181 (410)
T ss_dssp             ----------TTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-------------------------
T ss_pred             ----------CCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------------------------
Confidence                      000113456889999999999999999999999999999999976                         


Q ss_pred             cccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEE
Q 006424          257 GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ  334 (645)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~  334 (645)
                                          ...+..+.+|...|.+++|+|++ +|++|+.|++|++||+.++.++..+. |...|.++.
T Consensus       182 --------------------~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~  241 (410)
T 1vyh_C          182 --------------------FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR  241 (410)
T ss_dssp             --------------------SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             --------------------CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence                                34567788999999999999987 89999999999999999999988874 888999999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccC--------------------CCEEEEEecCCeE
Q 006424          335 FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPD--------------------GKGFIVGSITGTC  393 (645)
Q Consensus       335 ~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~--------------------g~~l~~g~~dg~i  393 (645)
                      |+| ++.++++|+.|++|++||+++++... +..|...|.+++|+|+                    |.++++|+.||.|
T Consensus       242 ~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i  320 (410)
T 1vyh_C          242 PNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI  320 (410)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred             ECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence            999 99999999999999999999877654 6789999999999996                    6789999999999


Q ss_pred             EEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC
Q 006424          394 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG  473 (645)
Q Consensus       394 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~  473 (645)
                      ++||+++......   +.    .|...|.+++|+|+| .+|++++.|+.|++||............|...|++++|+|++
T Consensus       321 ~iwd~~~~~~~~~---~~----~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~  392 (410)
T 1vyh_C          321 KMWDVSTGMCLMT---LV----GHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA  392 (410)
T ss_dssp             EEEETTTTEEEEE---EE----CCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS
T ss_pred             EEEECCCCceEEE---EE----CCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC
Confidence            9999987764322   22    245789999999998 799999999999999987544333444588899999999999


Q ss_pred             CEEEEEeCCccEEEEeCC
Q 006424          474 KHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       474 ~~l~t~s~dg~I~iwd~~  491 (645)
                      .+|++|+.||+|++|+++
T Consensus       393 ~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          393 PYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             SCEEEEETTSEEEEEC--
T ss_pred             CEEEEEeCCCcEEEEeCC
Confidence            999999999999999863

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3e-37  Score=323.04  Aligned_cols=314  Identities=17%  Similarity=0.243  Sum_probs=238.9

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      +|.+.|++++|+|||++||+|+ |+.+++|++.++.............                           .....
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~---------------------------~~~~~  113 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------------------------KDPEN  113 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc---------------------------ccccc
Confidence            6999999999999999999987 6889999998865433211100000                           00000


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      ........+...|.+++|+|++ +|++|+.|++|++||+.+++.+..+. |...|.+++|+| ++++|++++.|++|++|
T Consensus       114 ~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iw  192 (393)
T 1erj_A          114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIW  192 (393)
T ss_dssp             -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred             ccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEE
Confidence            0011122345569999999997 89999999999999999999888775 899999999999 99999999999999999


Q ss_pred             eCCCCcEEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424          356 GVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  434 (645)
Q Consensus       356 d~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l  434 (645)
                      |+++++......+...+.+++|+| +++++++|+.||.|++||+++................|...|.+++|+|+| .+|
T Consensus       193 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l  271 (393)
T 1erj_A          193 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSV  271 (393)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEE
T ss_pred             ECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-CEE
Confidence            999998887777888999999999 899999999999999999987764322111111123456899999999998 899


Q ss_pred             EEEECCCeEEEEECCcc------------eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC
Q 006424          435 MITSEDSKLRILDGVDV------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN  502 (645)
Q Consensus       435 ~~~s~dg~I~iwd~~~~------------~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~  502 (645)
                      ++++.|+.|++||+...            ........|...|.+++|+|++++|++|+.||.|++||+.++...      
T Consensus       272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~------  345 (393)
T 1erj_A          272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL------  345 (393)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE------
T ss_pred             EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE------
Confidence            99999999999997632            112233458889999999999999999999999999999876321      


Q ss_pred             CcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCC
Q 006424          503 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP  582 (645)
Q Consensus       503 ~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~  582 (645)
                          ...-.+.+.+.+++|+++.                                     .|+|++.++++++. |++|+
T Consensus       346 ----~~l~~h~~~v~~v~~~~~~-------------------------------------~~~p~~~~l~sgs~-Dg~i~  383 (393)
T 1erj_A          346 ----LMLQGHRNSVISVAVANGS-------------------------------------SLGPEYNVFATGSG-DCKAR  383 (393)
T ss_dssp             ----EEEECCSSCEEEEEECSSC-------------------------------------TTCTTCEEEEEEET-TSEEE
T ss_pred             ----EEECCCCCCEEEEEecCCc-------------------------------------CcCCCCCEEEEECC-CCcEE
Confidence                1111245567777776542                                     25677888888888 89999


Q ss_pred             CCCCccC
Q 006424          583 LWDVTID  589 (645)
Q Consensus       583 iWd~~~~  589 (645)
                      +|++...
T Consensus       384 iW~~~~~  390 (393)
T 1erj_A          384 IWKYKKI  390 (393)
T ss_dssp             EEEEEEC
T ss_pred             ECccccc
Confidence            9987654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.1e-37  Score=311.68  Aligned_cols=299  Identities=16%  Similarity=0.256  Sum_probs=239.5

Q ss_pred             cccchhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCC
Q 006424           91 EANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKP  170 (645)
Q Consensus        91 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (645)
                      +...|..+|.+|...|..++|++.+...+++++.            |++++.|-.              ...        
T Consensus         5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~------------D~~v~~W~~--------------~~~--------   50 (319)
T 3frx_A            5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASR------------DKTLISWKL--------------TGD--------   50 (319)
T ss_dssp             EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEET------------TSEEEEEEE--------------EEE--------
T ss_pred             eEEEEEEEEccccceEEEEEccCCCccEEEEecC------------CccEEEecC--------------CCC--------
Confidence            3445667899999999999999976444778877            776666610              000        


Q ss_pred             ccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCC
Q 006424          171 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAK  250 (645)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  250 (645)
                                     ........+++++|...|++++|+|+|++|++|+.||+|++||+.+                   
T Consensus        51 ---------------~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~-------------------   96 (319)
T 3frx_A           51 ---------------DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-------------------   96 (319)
T ss_dssp             ---------------TTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------------------
T ss_pred             ---------------CccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-------------------
Confidence                           0000113456889999999999999999999999999999999987                   


Q ss_pred             CceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCc
Q 006424          251 EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNY  329 (645)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~  329 (645)
                                                ++.+..+.+|...|.+++|+|++ +|++|+.|++|++||++........+|...
T Consensus        97 --------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~  150 (319)
T 3frx_A           97 --------------------------GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDW  150 (319)
T ss_dssp             --------------------------TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSC
T ss_pred             --------------------------CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCc
Confidence                                      44567888999999999999987 899999999999999986555445579999


Q ss_pred             EEEEEEeeC-----CCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce
Q 006424          330 VTCVQFNPI-----DDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  403 (645)
Q Consensus       330 v~~l~~~p~-----~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~  403 (645)
                      |.+++|.|.     ++..+++++.|+.|++||+++.+... +.+|...|.+++|+|+|++|++|+.||.|++||+.+...
T Consensus       151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~  230 (319)
T 3frx_A          151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA  230 (319)
T ss_dssp             EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred             EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            999999982     23489999999999999999877654 678999999999999999999999999999999988764


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEee--------cCCCCCeEEEEEecCCCE
Q 006424          404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG--------LPKSGSQMSASFTTTGKH  475 (645)
Q Consensus       404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~--------~~~~~~i~~v~~sp~~~~  475 (645)
                      ... +  ..     ...+.+++|+|++ .++++++. +.+++|++.........        ..+...+.+++|+|+|++
T Consensus       231 ~~~-~--~~-----~~~v~~~~~sp~~-~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  300 (319)
T 3frx_A          231 MYT-L--SA-----QDEVFSLAFSPNR-YWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT  300 (319)
T ss_dssp             EEE-E--EC-----CSCEEEEEECSSS-SEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred             EEE-e--cC-----CCcEEEEEEcCCC-CEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCE
Confidence            322 2  22     2679999999997 77777765 45999997643222211        124567899999999999


Q ss_pred             EEEEeCCccEEEEeCCCC
Q 006424          476 IISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       476 l~t~s~dg~I~iwd~~~~  493 (645)
                      |++|+.||.|++||+.++
T Consensus       301 l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          301 LFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEETTSCEEEEEEEEC
T ss_pred             EEEeecCceEEEEEEeec
Confidence            999999999999998754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2e-36  Score=335.70  Aligned_cols=421  Identities=16%  Similarity=0.114  Sum_probs=292.7

Q ss_pred             cccccccccCc-EEEEEECC--CCCEEEEEeCCCcEEEEEcCCC--------ceeeeEecCCCCc--ccCCCCce-EEec
Q 006424          192 TSQEIQAHKGC-IWTLKFSP--DGRYLASGGEDGVVRIWHVTSV--------AASCKSFTDDGGF--GSNAKEGK-IKFG  257 (645)
Q Consensus       192 ~~~~l~~H~~~-V~~l~fsp--dg~~L~sgs~Dg~I~iwd~~~~--------~~~~~~~~~~~~~--~~~~~~~~-~~~~  257 (645)
                      ..+.+.+|.+. |++++|+|  ++++|++|+.||.|++||+.++        .............  ......+. +...
T Consensus        55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  134 (615)
T 1pgu_A           55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  134 (615)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe
Confidence            45668899999 99999999  9999999999999999999754        1111111111111  00001111 1111


Q ss_pred             ccC-CCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEec-CCC---cE
Q 006424          258 KKK-SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHN---YV  330 (645)
Q Consensus       258 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~---~v  330 (645)
                      ... .....+..+    + ....+..+.+|...|.+++|+|++  .+++++.|+.|++||+.+++.+..+. |..   .|
T Consensus       135 ~~~~~~~~~v~~~----d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v  209 (615)
T 1pgu_A          135 GEGRDNFGVFISW----D-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV  209 (615)
T ss_dssp             ECCSSCSEEEEET----T-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCE
T ss_pred             ccCCCCccEEEEE----E-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceE
Confidence            100 001112111    1 245677888999999999999987  79999999999999999999988886 777   89


Q ss_pred             EEEEEeeCC-CCEEEEEeCCCcEEEEeCCCCcEEEee-----ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee
Q 006424          331 TCVQFNPID-DNYFISGSIDGKVRIWGVCEKRVVDWA-----DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  404 (645)
Q Consensus       331 ~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~  404 (645)
                      .+++|+| + ++++++++.|+.|++||+++++.....     .|...|.+++|+ +++++++++.||.|++||+++....
T Consensus       210 ~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~  287 (615)
T 1pgu_A          210 RDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV  287 (615)
T ss_dssp             EEEEECS-TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEEECC-CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE
Confidence            9999999 7 999999999999999999998877755     899999999999 9999999999999999999876643


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCC----------------------
Q 006424          405 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSG----------------------  462 (645)
Q Consensus       405 ~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~----------------------  462 (645)
                      . .+..+  .......+.++.|. ++ .++++++.|+.|++||............|..                      
T Consensus       288 ~-~~~~~--~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w  362 (615)
T 1pgu_A          288 Q-KWTLD--KQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEW  362 (615)
T ss_dssp             E-EEECC--TTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEET
T ss_pred             E-EEcCC--CCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEE
Confidence            2 22222  11223567888886 54 7999999999999999875333333333444                      


Q ss_pred             -----------CeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC----------------------------C-----
Q 006424          463 -----------SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS----------------------------S-----  498 (645)
Q Consensus       463 -----------~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~----------------------------~-----  498 (645)
                                 .|.+++| +++.+|++++.||.|++||+.++....                            .     
T Consensus       363 ~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (615)
T 1pgu_A          363 SSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK  441 (615)
T ss_dssp             TTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence                       4444555 336667777777777777664321000                            0     


Q ss_pred             --------------------ccc-CCcce-----------eeeeecCCcEEEEecCCCCccccccCCCCccccCcccccc
Q 006424          499 --------------------KQK-NSVRS-----------CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL  546 (645)
Q Consensus       499 --------------------~~~-~~~~~-----------~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~  546 (645)
                                          ... .....           .....+.+.+.+++|+|++.+|++.+.++   .+.+|+..
T Consensus       442 ~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~i~iw~~~  518 (615)
T 1pgu_A          442 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG---KILLYDLQ  518 (615)
T ss_dssp             EEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETT
T ss_pred             ecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCC---eEEEeeCC
Confidence                                000 00000           11122467789999999999999887764   35677764


Q ss_pred             ccCC--ccCC-CCccccCccccC----------CCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCC
Q 006424          547 ETAP--WIRD-SERFSLGSWFSN----------DGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV  613 (645)
Q Consensus       547 ~~~~--~~~~-~~~~~~~~~fs~----------dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  613 (645)
                      ....  .... +...+++++|+|          |++++++++. |+.|++||+.++...        ......|......
T Consensus       519 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~--------~~~~~~h~~~v~~  589 (615)
T 1pgu_A          519 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL-DTNIFIYSVKRPMKI--------IKALNAHKDGVNN  589 (615)
T ss_dssp             TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET-TSCEEEEESSCTTCC--------EEETTSSTTCEEE
T ss_pred             CCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcC-CCcEEEEECCCCcee--------chhhhcCccceEE
Confidence            4333  3344 788899999999          9999999998 999999999886200        0111122222233


Q ss_pred             ccCCCCcceEEEEecCCCeEeEEEec
Q 006424          614 RAISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       614 ~~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                      +.|++ |+. |+|++.||+|++|++.
T Consensus       590 l~~s~-~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          590 LLWET-PST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             EEEEE-TTE-EEEEETTSCEEEEEEC
T ss_pred             EEEcC-CCC-eEEecCCceEEEEeee
Confidence            45555 688 9999999999999974

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.6e-36  Score=302.99  Aligned_cols=293  Identities=26%  Similarity=0.450  Sum_probs=236.8

Q ss_pred             ccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          189 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       189 ~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      ...+..++.+|.+.|++++|+|++++|++|+.||.|++|++.+                                     
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-------------------------------------   54 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-------------------------------------   54 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------------------------
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC-------------------------------------
Confidence            3456677899999999999999999999999999999999876                                     


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEE
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~  346 (645)
                              ++....+.+|...|.+++|+|++ +|++|+.|+.|++||+++++++..+. |...|.+++|+| +++++++|
T Consensus        55 --------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~  125 (312)
T 4ery_A           55 --------GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG  125 (312)
T ss_dssp             --------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEE
T ss_pred             --------cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEE
Confidence                    34456778999999999999987 89999999999999999999888775 889999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          347 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      +.|+.|++||+++++... +..|...|.+++|+|+++++++++.||.|++||+++........      ..+...+.+++
T Consensus       126 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------~~~~~~~~~~~  199 (312)
T 4ery_A          126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI------DDDNPPVSFVK  199 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC------CSSCCCEEEEE
T ss_pred             eCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe------ccCCCceEEEE
Confidence            999999999999877654 66788999999999999999999999999999998776432211      12246799999


Q ss_pred             EcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCC--eEEEEEe-cCCCEEEEEeCCccEEEEeCCCCCcCCCcccC
Q 006424          426 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS--QMSASFT-TTGKHIISIGDDCRVYVWNYDELCFPSSKQKN  502 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~--i~~v~~s-p~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~  502 (645)
                      |+|++ .++++++.|+.|++||+...........|...  .....++ +++.+|++|+.||.|++||+.+++...     
T Consensus       200 ~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~-----  273 (312)
T 4ery_A          200 FSPNG-KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ-----  273 (312)
T ss_dssp             ECTTS-SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE-----
T ss_pred             ECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh-----
Confidence            99998 89999999999999998865443333333332  2233444 678999999999999999998763211     


Q ss_pred             CcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424          503 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  545 (645)
Q Consensus       503 ~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~  545 (645)
                           ....+.+.+..++|+|++..+++.+.+ ....+++|+.
T Consensus       274 -----~~~~h~~~v~~~~~~p~~~~l~s~~~~-~d~~i~~W~~  310 (312)
T 4ery_A          274 -----KLQGHTDVVISTACHPTENIIASAALE-NDKTIKLWKS  310 (312)
T ss_dssp             -----EECCCSSCEEEEEECSSSSEEEEEECT-TTCCEEEEEC
T ss_pred             -----hhhccCCcEEEEeecCcCCceEEEEcc-CCccEEEecC
Confidence                 112345678899999999988865421 1233556654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.2e-37  Score=324.40  Aligned_cols=305  Identities=21%  Similarity=0.297  Sum_probs=246.3

Q ss_pred             hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424           95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK  174 (645)
Q Consensus        95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (645)
                      ...+|.+|...|+.+.|+|++.. +++++.            |++++.|-                              
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~------------D~~v~iWd------------------------------   94 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNW-IVSASQ------------DGRLIVWN------------------------------   94 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSC-EEEEET------------TSEEEEEE------------------------------
T ss_pred             EeecccccccEEEEEEEcCCCCE-EEEEeC------------CCeEEEEE------------------------------
Confidence            45689999999999999999887 888888            77777660                              


Q ss_pred             hHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceE
Q 006424          175 MEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI  254 (645)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (645)
                                  .........+++|...|.+++|+|+|++|++|+.|+.+++||+.+.....                  
T Consensus        95 ------------~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~------------------  144 (380)
T 3iz6_a           95 ------------ALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD------------------  144 (380)
T ss_dssp             ------------TTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC------------------
T ss_pred             ------------CCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc------------------
Confidence                        00011234577899999999999999999999999999999987521100                  


Q ss_pred             EecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe------cC
Q 006424          255 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF------DH  326 (645)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~------~~  326 (645)
                                          ........+.+|.+.|.++.|+|++  .|++|+.|++|++||+.+++.+..+      .|
T Consensus       145 --------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h  204 (380)
T 3iz6_a          145 --------------------GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH  204 (380)
T ss_dssp             --------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC
T ss_pred             --------------------CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC
Confidence                                0122345678999999999999863  7999999999999999999988776      37


Q ss_pred             CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC--CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee
Q 006424          327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  404 (645)
Q Consensus       327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~  404 (645)
                      ...|.+++|+|.++++|++|+.|++|++||++.  .....+.+|...|++++|+|++++|++|+.||+|++||+++....
T Consensus       205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~  284 (380)
T 3iz6_a          205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL  284 (380)
T ss_dssp             CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred             ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence            889999999886889999999999999999974  334557789999999999999999999999999999999987643


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEee----cCCCCCeEEEEEecCCCEEEEEe
Q 006424          405 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG----LPKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       405 ~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~----~~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      ............+...+++++|+|+| .++++|+.||.|++||..........    ..|.+.|.+++|+|+|++|++|+
T Consensus       285 ~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  363 (380)
T 3iz6_a          285 QVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS  363 (380)
T ss_dssp             EEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred             EEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence            22111111111223458999999998 89999999999999997644333332    45889999999999999999999


Q ss_pred             CCccEEEEeCCCC
Q 006424          481 DDCRVYVWNYDEL  493 (645)
Q Consensus       481 ~dg~I~iwd~~~~  493 (645)
                      .||+|++|++...
T Consensus       364 ~D~~i~iW~~~~~  376 (380)
T 3iz6_a          364 WDKNLKIWAFSGH  376 (380)
T ss_dssp             TTSCEEEEECCSS
T ss_pred             CCCCEEEEecCCC
Confidence            9999999999765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.1e-36  Score=309.50  Aligned_cols=319  Identities=15%  Similarity=0.177  Sum_probs=231.9

Q ss_pred             CCceeeccCcc-CeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE----ecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          278 SPLQELHGHKG-DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV----FDHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       278 ~~~~~l~~h~~-~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~----~~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                      ..+..+.+|.. .|++++|+|++ +|++|+.|++|++||+.++.....    .+|...|.+++|+| ++++|++|+.|++
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~   84 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCc
Confidence            34678889988 99999999998 899999999999999988764322    25899999999999 9999999999999


Q ss_pred             EEEEeCCCCc---EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          352 VRIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       352 i~vwd~~~~~---~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      +++||+..+.   ...+.+|...|.+++|+|++++|++|+.|+.|++||+...........+    ..|...|.+++|+|
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL----NSHTQDVKHVVWHP  160 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE----CCCCSCEEEEEECS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe----cCcCCCeEEEEECC
Confidence            9999998764   3456789999999999999999999999999999999876432211112    23457899999999


Q ss_pred             CCCcEEEEEECCCeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcce
Q 006424          429 DESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRS  506 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~  506 (645)
                      ++ .+|++++.|+.|++||....  ........|...|.+++|+|++++|++|+.||+|++||..........      .
T Consensus       161 ~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~------~  233 (345)
T 3fm0_A          161 SQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV------A  233 (345)
T ss_dssp             SS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCC------C
T ss_pred             CC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccc------e
Confidence            97 79999999999999997643  233344558899999999999999999999999999997443211100      0


Q ss_pred             eeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCC
Q 006424          507 CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV  586 (645)
Q Consensus       507 ~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~  586 (645)
                      +..  .         .+....+...                    ...+...+.+++|+|++..+++++. |+.|++|+.
T Consensus       234 ~~~--~---------~~~~~~~~~~--------------------~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~vw~~  281 (345)
T 3fm0_A          234 CSG--S---------DPSWKCICTL--------------------SGFHSRTIYDIAWCQLTGALATACG-DDAIRVFQE  281 (345)
T ss_dssp             CC--------------CEEEEEEEE--------------------CSSCSSCEEEEEECTTTCCEEEEET-TSCEEEEEE
T ss_pred             eec--c---------CCccceeEEe--------------------cCCCCCcEEEEEEecCCCEEEEEeC-CCeEEEEEe
Confidence            000  0         0000000000                    0114456777888999998888887 899999987


Q ss_pred             ccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEecC
Q 006424          587 TIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYG  640 (645)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~g  640 (645)
                      ....................|......++++|.++.+|||||.||+|++|+...
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          282 DPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             CTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             CCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence            765211100000000001122222333566675446999999999999999753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.5e-36  Score=312.83  Aligned_cols=295  Identities=18%  Similarity=0.250  Sum_probs=242.7

Q ss_pred             hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424           95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK  174 (645)
Q Consensus        95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (645)
                      ...+|.+|...|+.++|+|++.. +++.+.            |+.++.|-          .                   
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~-l~s~s~------------Dg~v~vWd----------~-------------------   93 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRR-IVSSSQ------------DGKVIVWD----------S-------------------   93 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSE-EEEEET------------TSEEEEEE----------T-------------------
T ss_pred             EEEEecCCCCeEEEEEECCCCCE-EEEEeC------------CCeEEEEE----------C-------------------
Confidence            34578999999999999999877 888888            77766660          0                   


Q ss_pred             hHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceE
Q 006424          175 MEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI  254 (645)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (645)
                                   ......+.+..|...|.+++|+|+|.+|++|+.|+.+++|++.......                  
T Consensus        94 -------------~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~------------------  142 (354)
T 2pbi_B           94 -------------FTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN------------------  142 (354)
T ss_dssp             -------------TTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC------------------
T ss_pred             -------------CCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc------------------
Confidence                         0001223456788899999999999999999999999999986421000                  


Q ss_pred             EecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEE
Q 006424          255 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTC  332 (645)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~  332 (645)
                                           .......+.+|...|.+++|+|++ .|++++.|++|++||+++++++..+. |...|.+
T Consensus       143 ---------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~  201 (354)
T 2pbi_B          143 ---------------------MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLC  201 (354)
T ss_dssp             ---------------------SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             ---------------------ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEE
Confidence                                 012345677899999999999987 89999999999999999999988885 8899999


Q ss_pred             EEEeeC-CCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEee
Q 006424          333 VQFNPI-DDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF  410 (645)
Q Consensus       333 l~~~p~-~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  410 (645)
                      ++|+|. ++++|++|+.||.|++||+++++... +..|...|++++|+|++++|++|+.|+.|++||++...... ....
T Consensus       202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~-~~~~  280 (354)
T 2pbi_B          202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA-IYSK  280 (354)
T ss_dssp             EEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECC
T ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEcC
Confidence            999883 35799999999999999999988665 66789999999999999999999999999999998765322 1111


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                      .    .+...+.+++|+|+| .++++++.|+.|++||+.+.........|...|.+++|+|+|++|++|+.||+|++|+
T Consensus       281 ~----~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          281 E----SIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             T----TCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             C----CcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            1    123578999999998 8999999999999999875544444556899999999999999999999999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.3e-36  Score=337.31  Aligned_cols=244  Identities=15%  Similarity=0.220  Sum_probs=206.6

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .|.+.|++++|+|+|++|++++ ++.|++||+.++..                                         ..
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------------------------~~   53 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------------------------KV   53 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------------------------SS
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------------------------cc
Confidence            6899999999999999999998 88999999986200                                         01


Q ss_pred             CCceeeccCccC-eEEEEEcC--CC-eEEEEeCCCcEEEEecCCC--------eEEEEec-CCCcEEEEEEeeCCCCEEE
Q 006424          278 SPLQELHGHKGD-VLDLAWSN--SN-YLLSCSMDKTVRMWQVGCN--------QCLNVFD-HHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       278 ~~~~~l~~h~~~-V~~l~~s~--~~-~l~s~s~dg~I~iwd~~~~--------~~~~~~~-~~~~v~~l~~~p~~~~~l~  344 (645)
                      .....+.+|... |++++|+|  ++ +|++++.||.|++||+.++        +....+. |...|.+++|+| ++++++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~  132 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLC  132 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEE
Confidence            567788999999 99999999  87 8999999999999999754        5555554 889999999999 999999


Q ss_pred             EEeCC----CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424          345 SGSID----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  419 (645)
Q Consensus       345 s~s~d----g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  419 (645)
                      +++.+    +.|++|| .......+..|...|.+++|+|+++ .+++++.||.|++||+........   +.    .|..
T Consensus       133 ~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~---~~----~~~~  204 (615)
T 1pgu_A          133 VVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS---DR----THHK  204 (615)
T ss_dssp             EEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE---EC----SSSC
T ss_pred             EeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee---ec----ccCC
Confidence            99988    6899999 3445566788999999999999998 899999999999999877654322   22    2345


Q ss_pred             ---CeEEEEEcCC-CCcEEEEEECCCeEEEEECCcceeeEee-c---CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          420 ---KITGIQFSRD-ESQRIMITSEDSKLRILDGVDVIHKFKG-L---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       420 ---~i~~i~~s~~-g~~~l~~~s~dg~I~iwd~~~~~~~~~~-~---~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                         .|.+++|+|+ + .++++++.|+.|++||+......... .   .|...|.+++|+ ++++|++++.||.|++||+.
T Consensus       205 ~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~  282 (615)
T 1pgu_A          205 QGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT  282 (615)
T ss_dssp             TTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred             CCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence               8999999999 7 89999999999999998765444444 3   688999999999 99999999999999999998


Q ss_pred             CCC
Q 006424          492 ELC  494 (645)
Q Consensus       492 ~~~  494 (645)
                      +++
T Consensus       283 ~~~  285 (615)
T 1pgu_A          283 TSK  285 (615)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-36  Score=319.41  Aligned_cols=280  Identities=18%  Similarity=0.226  Sum_probs=209.0

Q ss_pred             ccccCcEEEEEECCCCC-EEEEEeCCCcEEEEEc----CCCce------eeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424          197 QAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHV----TSVAA------SCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  265 (645)
Q Consensus       197 ~~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (645)
                      ..|.+.|++++|+|+|+ +||+|+.||.|++|++    .++..      ......                         
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-------------------------   96 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH-------------------------   96 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC-------------------------
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc-------------------------
Confidence            34669999999999999 9999999999999999    66431      100000                         


Q ss_pred             eecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEE
Q 006424          266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF  343 (645)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l  343 (645)
                                .........+|.+.|++++|+|++ +|++++.||.|++|| .+++.+..+. |...|.+++|+| ++++|
T Consensus        97 ----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l  164 (425)
T 1r5m_A           97 ----------PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHI  164 (425)
T ss_dssp             ----------CCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEE
T ss_pred             ----------cccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEE
Confidence                      000111233578899999999987 899999999999999 5566666664 889999999999 99999


Q ss_pred             EEEeCCCcEEEEeCCCCcEEEe-eccCCC---------------eEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424          344 ISGSIDGKVRIWGVCEKRVVDW-ADVRDV---------------ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK  407 (645)
Q Consensus       344 ~s~s~dg~i~vwd~~~~~~~~~-~~~~~~---------------v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~  407 (645)
                      ++++.|+.|++||+.+++.... ..+...               +.+++|+|++ .+++++.+|.|++||+........ 
T Consensus       165 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~-  242 (425)
T 1r5m_A          165 ISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGK-  242 (425)
T ss_dssp             EEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEE-
T ss_pred             EEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeee-
Confidence            9999999999999998876653 334444               8999999975 688999999999999987654322 


Q ss_pred             EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEE
Q 006424          408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV  487 (645)
Q Consensus       408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~i  487 (645)
                      +  .    .|...|.+++|+|++ .+|++++.|+.|++||+...........|...|.+++|+|++ ++++++.||.|++
T Consensus       243 ~--~----~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i  314 (425)
T 1r5m_A          243 L--I----GHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRL  314 (425)
T ss_dssp             E--C----CCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred             e--c----cCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEE
Confidence            1  1    235789999999997 799999999999999987654444445588899999999999 9999999999999


Q ss_pred             EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424          488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS  533 (645)
Q Consensus       488 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~  533 (645)
                      ||+.++...          .....+.+.+..++|+|++..|++.+.
T Consensus       315 ~d~~~~~~~----------~~~~~~~~~i~~~~~s~~~~~l~~~~~  350 (425)
T 1r5m_A          315 WSLKQNTLL----------ALSIVDGVPIFAGRISQDGQKYAVAFM  350 (425)
T ss_dssp             EETTTTEEE----------EEEECTTCCEEEEEECTTSSEEEEEET
T ss_pred             EECCCCcEe----------EecccCCccEEEEEEcCCCCEEEEEEC
Confidence            999865211          011123445556666666655554443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-36  Score=305.05  Aligned_cols=251  Identities=21%  Similarity=0.291  Sum_probs=197.7

Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      ...++|++|.+.|++++|+|+  +||+|+.||+|++||+..+.                                     
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~-------------------------------------   45 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD-------------------------------------   45 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC-------------------------------------
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC-------------------------------------
Confidence            356778999999999999988  99999999999999997621                                     


Q ss_pred             CceeccCCCceee-cc-CccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC-------CeEEEEe-cCCCcEEEEEEeeCC
Q 006424          271 EVFQIEESPLQEL-HG-HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------NQCLNVF-DHHNYVTCVQFNPID  339 (645)
Q Consensus       271 ~~~~~~~~~~~~l-~~-h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~-------~~~~~~~-~~~~~v~~l~~~p~~  339 (645)
                            ......+ .+ |...|.+++|+|++ +|++|+.|++|++||++.       .+.+..+ +|...|.+++|+| +
T Consensus        46 ------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~  118 (330)
T 2hes_X           46 ------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-D  118 (330)
T ss_dssp             ------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-T
T ss_pred             ------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-C
Confidence                  1122334 34 99999999999987 899999999999999853       3445555 4899999999999 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCC----cE-EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccc
Q 006424          340 DNYFISGSIDGKVRIWGVCEK----RV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  414 (645)
Q Consensus       340 ~~~l~s~s~dg~i~vwd~~~~----~~-~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  414 (645)
                      +++|++|+.|++|++||++..    ++ ..+.+|...|.+++|+|++++|++|+.|+.|++||......... ..+    
T Consensus       119 g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~-~~~----  193 (330)
T 2hes_X          119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV-AVL----  193 (330)
T ss_dssp             SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE-EEE----
T ss_pred             CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE-EEc----
Confidence            999999999999999999532    23 34678999999999999999999999999999999876532111 112    


Q ss_pred             ccCCCCeEEEEEcCCC-CcEEEEEECCCeEEEEECCcc--------eeeEeec-CCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424          415 KTSGNKITGIQFSRDE-SQRIMITSEDSKLRILDGVDV--------IHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCR  484 (645)
Q Consensus       415 ~~~~~~i~~i~~s~~g-~~~l~~~s~dg~I~iwd~~~~--------~~~~~~~-~~~~~i~~v~~sp~~~~l~t~s~dg~  484 (645)
                      ..|...|.+++|+|++ ..+|++++.|++|++||+...        ....... .|...|.+++|++++ +|++++.||.
T Consensus       194 ~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~  272 (330)
T 2hes_X          194 NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV  272 (330)
T ss_dssp             CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC
T ss_pred             cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE
Confidence            2346889999999983 268999999999999997532        1111222 278899999999665 8999999999


Q ss_pred             EEEEeCCCC
Q 006424          485 VYVWNYDEL  493 (645)
Q Consensus       485 I~iwd~~~~  493 (645)
                      |++||..++
T Consensus       273 v~iw~~~~~  281 (330)
T 2hes_X          273 LAVYEEVDG  281 (330)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEcCCC
Confidence            999997644

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-37  Score=322.71  Aligned_cols=333  Identities=14%  Similarity=0.182  Sum_probs=255.8

Q ss_pred             ccCcEEEEEECCCCC-EEEEE----------eCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424          199 HKGCIWTLKFSPDGR-YLASG----------GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  267 (645)
Q Consensus       199 H~~~V~~l~fspdg~-~L~sg----------s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (645)
                      +...|.+++|+|+|+ +|++|          +.||.|++||+.++..                                 
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~---------------------------------   57 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS---------------------------------   57 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG---------------------------------
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC---------------------------------
Confidence            445789999999997 99999          8999999999987321                                 


Q ss_pred             cCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC----CeEEEEe-cCCCcEEEEEEeeCCCC
Q 006424          268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----NQCLNVF-DHHNYVTCVQFNPIDDN  341 (645)
Q Consensus       268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~----~~~~~~~-~~~~~v~~l~~~p~~~~  341 (645)
                               .+++..+ .|...|.+++|+|++ +|++++.||.|++||+.+    .+.+..+ .|...|.+++|+|.+++
T Consensus        58 ---------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  127 (416)
T 2pm9_A           58 ---------EKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN  127 (416)
T ss_dssp             ---------CSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT
T ss_pred             ---------CcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC
Confidence                     1122333 588999999999987 899999999999999987    3455555 49999999999993389


Q ss_pred             EEEEEeCCCcEEEEeCCCCc------EE-E---eeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEee
Q 006424          342 YFISGSIDGKVRIWGVCEKR------VV-D---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDF  410 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~~~~~------~~-~---~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  410 (645)
                      +|++++.|+.|++||+++++      .. .   ...|...|.+++|+|+ +.++++++.||.|++||++..... ..+..
T Consensus       128 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~  206 (416)
T 2pm9_A          128 VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV-IHLSY  206 (416)
T ss_dssp             BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE-EEECC
T ss_pred             EEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc-eEEec
Confidence            99999999999999998875      22 2   3568889999999999 789999999999999999886643 23333


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEECCC---eEEEEECCcc-eeeEeec-CCCCCeEEEEEec-CCCEEEEEeCCcc
Q 006424          411 HDRKKTSGNKITGIQFSRDESQRIMITSEDS---KLRILDGVDV-IHKFKGL-PKSGSQMSASFTT-TGKHIISIGDDCR  484 (645)
Q Consensus       411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg---~I~iwd~~~~-~~~~~~~-~~~~~i~~v~~sp-~~~~l~t~s~dg~  484 (645)
                      +.....|...+.+++|+|++..++++++.|+   .|++||++.. ....... .|...|.+++|+| ++++|++++.||.
T Consensus       207 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~  286 (416)
T 2pm9_A          207 TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT  286 (416)
T ss_dssp             CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE
T ss_pred             cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC
Confidence            3222233578999999999767999999999   9999998753 2222223 4888999999999 9999999999999


Q ss_pred             EEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCC-ccccccCCCCccccCccccccccCCcc-----------
Q 006424          485 VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG-TEQKSLCSSSLRDCSQKWDNLETAPWI-----------  552 (645)
Q Consensus       485 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~-~~l~~~~~~~~~~~~~~w~~~~~~~~~-----------  552 (645)
                      |++||+.+++....          ...+.+.+..++|+|++ ..+++.+.|+.   +.+|+........           
T Consensus       287 v~~wd~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~~l~s~~~d~~---i~iw~~~~~~~~~~~~~~~~~~~~  353 (416)
T 2pm9_A          287 VLLWNPESAEQLSQ----------FPARGNWCFKTKFAPEAPDLFACASFDNK---IEVQTLQNLTNTLDEQETETKQQE  353 (416)
T ss_dssp             EEEECSSSCCEEEE----------EECSSSCCCCEEECTTCTTEEEECCSSSE---EEEEESCCCCCSSCC---------
T ss_pred             EEEeeCCCCcccee----------ecCCCCceEEEEECCCCCCEEEEEecCCc---EEEEEccCCCCCcccccccccccC
Confidence            99999987632111          11234556777888877 56666665533   4455542222111           


Q ss_pred             --------------------------CCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccC
Q 006424          553 --------------------------RDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  589 (645)
Q Consensus       553 --------------------------~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~  589 (645)
                                                ..+...+.+++|||||+++++++. |+.|++|++.+.
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-d~~v~~w~~~~~  415 (416)
T 2pm9_A          354 SETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD-GKGVSITNPKIS  415 (416)
T ss_dssp             -------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT-SSCBCCBCCCCC
T ss_pred             CcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC-CCeEEEEEeccC
Confidence                                      114556779999999999999997 999999998875

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.7e-35  Score=302.75  Aligned_cols=304  Identities=16%  Similarity=0.248  Sum_probs=238.9

Q ss_pred             cccccccccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          190 LYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       190 ~~~~~~l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      +.+..+|+||++.|++++|+|+ +++|||||.||+|+|||+.+....                                 
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~---------------------------------   74 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN---------------------------------   74 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---------------------------------
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---------------------------------
Confidence            3456789999999999999997 689999999999999999863211                                 


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEE
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~  346 (645)
                             ...+...+.+|...|.+++|+|++ +|++++.|+.|++|+........... +...+..+.+++ ++++++++
T Consensus        75 -------~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~  146 (340)
T 4aow_A           75 -------YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSG  146 (340)
T ss_dssp             -------SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEE
T ss_pred             -------cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEee-cCccceee
Confidence                   023456788999999999999997 89999999999999999888777664 667888889999 89999999


Q ss_pred             eCCCcEEEEeCCCCcEEE--eeccCCCeEEEEEccCC--CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424          347 SIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~--~~~~~~~v~~l~~sp~g--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      +.|+.+++||+.......  ...|...+..++|++++  .++++++.|+.|++||+++......   +.    .|...|+
T Consensus       147 s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~---~~----~h~~~v~  219 (340)
T 4aow_A          147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN---HI----GHTGYLN  219 (340)
T ss_dssp             ETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE---EC----CCSSCEE
T ss_pred             cCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE---ec----CCCCcEE
Confidence            999999999998765443  56788899999998865  5788999999999999988765322   22    2457899


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN  502 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~  502 (645)
                      +++|+|++ .+|++++.|+.|++||+.......... +...+.+++|+|++.++ +++.|+.|++||+++......    
T Consensus       220 ~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~----  292 (340)
T 4aow_A          220 TVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDE----  292 (340)
T ss_dssp             EEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEE----
T ss_pred             EEEECCCC-CEEEEEeCCCeEEEEEeccCceeeeec-CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEe----
Confidence            99999998 899999999999999988655544433 55689999999987655 556799999999986521100    


Q ss_pred             CcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCC
Q 006424          503 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP  582 (645)
Q Consensus       503 ~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~  582 (645)
                             +..  ...                               ......+...+++++|+|||+++++++. |+.|+
T Consensus       293 -------~~~--~~~-------------------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~-Dg~v~  331 (340)
T 4aow_A          293 -------LKQ--EVI-------------------------------STSSKAEPPQCTSLAWSADGQTLFAGYT-DNLVR  331 (340)
T ss_dssp             -------ECC--C--------------------------------------CCCCCEEEEEECTTSSEEEEEET-TSCEE
T ss_pred             -------ccc--cce-------------------------------eeeccCCCCCEEEEEECCCCCEEEEEeC-CCEEE
Confidence                   000  000                               0001234556777888888888888887 89999


Q ss_pred             CCCCccC
Q 006424          583 LWDVTID  589 (645)
Q Consensus       583 iWd~~~~  589 (645)
                      +||+.+|
T Consensus       332 iW~~~tG  338 (340)
T 4aow_A          332 VWQVTIG  338 (340)
T ss_dssp             EEEEEC-
T ss_pred             EEeCCCc
Confidence            9999987

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.5e-37  Score=351.00  Aligned_cols=414  Identities=15%  Similarity=0.145  Sum_probs=307.6

Q ss_pred             hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424           95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK  174 (645)
Q Consensus        95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (645)
                      +..+|.+|...|..++|+|++.. +++.+.            ++.++.|                               
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~-la~~~~------------~g~v~iw-------------------------------   40 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPW-VLTTLY------------SGRVEIW-------------------------------   40 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSE-EEEEET------------TSEEEEE-------------------------------
T ss_pred             cceeeecCCCceEEEEECCCCCE-EEEEeC------------CCEEEEE-------------------------------
Confidence            34578899999999999999876 555544            3333333                               


Q ss_pred             hHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceE
Q 006424          175 MEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI  254 (645)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (645)
                          .       .......+++.+|.+.|++++|+|++++|++|+.||.|++||+.+                       
T Consensus        41 ----d-------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-----------------------   86 (814)
T 3mkq_A           41 ----N-------YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-----------------------   86 (814)
T ss_dssp             ----E-------TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-----------------------
T ss_pred             ----E-------CCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC-----------------------
Confidence                0       001113456778999999999999999999999999999999987                       


Q ss_pred             EecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC-eEEEEe-cCCCcEE
Q 006424          255 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVT  331 (645)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~-~~~~~~-~~~~~v~  331 (645)
                                            ++.+..+.+|.+.|++++|+|++ +|++++.||.|++||+.++ .....+ .|...|.
T Consensus        87 ----------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  144 (814)
T 3mkq_A           87 ----------------------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM  144 (814)
T ss_dssp             ----------------------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE
T ss_pred             ----------------------CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE
Confidence                                  44567788999999999999998 8999999999999999887 555555 4889999


Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-ee-ccCCCeEEEEEcc--CCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424          332 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WA-DVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEK  407 (645)
Q Consensus       332 ~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~-~~~~~v~~l~~sp--~g~~l~~g~~dg~i~iwd~~~~~~~~~~  407 (645)
                      +++|+|.+++.+++++.||.|++||+.++.... .. .+...+.+++|+|  ++.++++++.||.|++||+.+..... .
T Consensus       145 ~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~  223 (814)
T 3mkq_A          145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA-T  223 (814)
T ss_dssp             EEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE-E
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE-E
Confidence            999999667899999999999999998765433 33 3448899999999  99999999999999999998766432 2


Q ss_pred             EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC--EEEEEeCCccE
Q 006424          408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HIISIGDDCRV  485 (645)
Q Consensus       408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~--~l~t~s~dg~I  485 (645)
                      +  .    .|...|.+++|+|++ .++++++.||.|++||............+...+.+++|+|++.  +++++ .++.+
T Consensus       224 ~--~----~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~  295 (814)
T 3mkq_A          224 L--E----GHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGF  295 (814)
T ss_dssp             E--E----CCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEE
T ss_pred             E--c----CCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCE
Confidence            2  2    234789999999998 7999999999999999886555555555788999999999987  45555 46778


Q ss_pred             EEEeCCCCCcCCCcccCC---------------------------------cceeeeeecCCcEEEEecCCCCccccccC
Q 006424          486 YVWNYDELCFPSSKQKNS---------------------------------VRSCEHFFSEGVSVAVQWPGIGTEQKSLC  532 (645)
Q Consensus       486 ~iwd~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~g~~~~v~~s~~~~~l~~~~  532 (645)
                      .+|++.............                                 ........+...+..++|+|+|..++..+
T Consensus       296 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~  375 (814)
T 3mkq_A          296 TVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG  375 (814)
T ss_dssp             EEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE
T ss_pred             EEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec
Confidence            889886543211110000                                 00000011233456899999999888766


Q ss_pred             CCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCC
Q 006424          533 SSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDD  612 (645)
Q Consensus       533 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  612 (645)
                      .+    .+.+|+..   .+...+...+.+++|||||+++++++. ++.|++|+.-.+                 +.....
T Consensus       376 ~~----~~~i~~~~---~~~~~~~~~i~~~~~spdg~~la~~~~-~g~v~l~~~~~~-----------------~~~~v~  430 (814)
T 3mkq_A          376 DG----EYVIYTAL---AWRNKAFGKCQDFVWGPDSNSYALIDE-TGQIKYYKNFKE-----------------VTSWSV  430 (814)
T ss_dssp             TT----EEEEEETT---TTEEEEEEECSEEEECTTSSCEEEECT-TCCEEEEETTEE-----------------CTTCCC
T ss_pred             CC----EEEEEECc---cccccCCCceEEEEEeCCCCeEEEEeC-CCcEEEEECCCC-----------------ccceEE
Confidence            42    33455532   122223456788999999999999887 899999964333                 112223


Q ss_pred             CccCCCCcc---eEEEEecCCCeEeEEEec-Cccc
Q 006424          613 VRAISATWG---LVIVTAGCDGMIKTFHNY-GLPI  643 (645)
Q Consensus       613 ~~~~~~~d~---~~ivt~s~Dg~Iriw~~~-g~~~  643 (645)
                      ...+++ ||   ..|++++.||+|++|++. |.++
T Consensus       431 ~~~~s~-dg~~~~~l~~~~~d~~v~~~d~~~~~~~  464 (814)
T 3mkq_A          431 PMHSAI-DRLFSGALLGVKSDGFVYFFDWDNGTLV  464 (814)
T ss_dssp             CCSSCC-CEEECSSSEEEEETTEEEEECTTTCCEE
T ss_pred             cCCcCc-cceecceEEEEecCCEEEEEECCcCcEE
Confidence            345555 56   489999999999999964 4443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.7e-35  Score=295.84  Aligned_cols=252  Identities=19%  Similarity=0.298  Sum_probs=208.5

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      ..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+.                                         
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~-----------------------------------------   41 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE-----------------------------------------   41 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS-----------------------------------------
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC-----------------------------------------
Confidence            357899999999999999999999999999999998742                                         


Q ss_pred             eccCCCceeeccCccCeEEEEEcCC--C-eEEEEeCCCcEEEEecCCCe--EEEEe-cCCCcEEEEEEeeCC--CCEEEE
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS  345 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~--~-~l~s~s~dg~I~iwd~~~~~--~~~~~-~~~~~v~~l~~~p~~--~~~l~s  345 (645)
                        ..+.+..+.+|.+.|++++|+++  + +|++|+.|++|++||+++++  .+..+ .|...|.+++|+| +  +.+|++
T Consensus        42 --~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s  118 (297)
T 2pm7_B           42 --THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLV  118 (297)
T ss_dssp             --CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC-GGGCSEEEE
T ss_pred             --CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc-CCCCcEEEE
Confidence              13456788999999999999863  4 89999999999999998874  34444 4889999999999 5  789999


Q ss_pred             EeCCCcEEEEeCCCCc---EEEeeccCCCeEEEEEccC-------------CCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424          346 GSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIPD-------------GKGFIVGSITGTCHFYKASGNDLKLEKVD  409 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~---~~~~~~~~~~v~~l~~sp~-------------g~~l~~g~~dg~i~iwd~~~~~~~~~~~~  409 (645)
                      ++.|+.|++||++++.   ...+..|...|.+++|+|+             +++|++|+.|+.|++||++......... 
T Consensus       119 ~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~-  197 (297)
T 2pm7_B          119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-  197 (297)
T ss_dssp             EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE-
T ss_pred             EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE-
Confidence            9999999999998753   3456789999999999997             5799999999999999998765322111 


Q ss_pred             eccccccCCCCeEEEEEcCCC--CcEEEEEECCCeEEEEECCcce-----eeEeecCCCCCeEEEEEecCCCEEEEEeCC
Q 006424          410 FHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDVI-----HKFKGLPKSGSQMSASFTTTGKHIISIGDD  482 (645)
Q Consensus       410 ~~~~~~~~~~~i~~i~~s~~g--~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d  482 (645)
                        .....|...|.+++|+|++  ..+|++++.|++|++||.....     ..+....+...|.+++|+|++++||+++.|
T Consensus       198 --~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D  275 (297)
T 2pm7_B          198 --STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  275 (297)
T ss_dssp             --EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred             --EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence              1122356899999999984  4799999999999999976421     122224567899999999999999999999


Q ss_pred             ccEEEEeCCC
Q 006424          483 CRVYVWNYDE  492 (645)
Q Consensus       483 g~I~iwd~~~  492 (645)
                      |.|++|+...
T Consensus       276 ~~v~lw~~~~  285 (297)
T 2pm7_B          276 NKVTLWKENL  285 (297)
T ss_dssp             SCEEEEEECT
T ss_pred             CcEEEEEECC
Confidence            9999999763

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-35  Score=304.76  Aligned_cols=296  Identities=18%  Similarity=0.301  Sum_probs=232.6

Q ss_pred             hhhhhhcccccceEEee-----ec-cccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCC
Q 006424           95 MVDELEQDQMNECVVTL-----EG-ESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSE  168 (645)
Q Consensus        95 l~~~l~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (645)
                      +...|.+|...|..++|     ++ ++.. +++.+.            |+.++.|-          +    ..... .  
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~-l~sgs~------------D~~v~iWd----------~----~~~~~-~--   62 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPV-LISGSR------------DKTVMIWK----------L----YEEEQ-N--   62 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCE-EEEEET------------TSCEEEEE----------E----CSSCC-S--
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCE-EEEEcC------------CCEEEEEE----------C----CcCCc-c--
Confidence            45688999999999998     55 4444 777777            77776661          0    00000 0  


Q ss_pred             CCccchhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccC
Q 006424          169 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN  248 (645)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  248 (645)
                                       . ........+.+|.+.|++++|+|++.+|++|+.||+|++||+.+                 
T Consensus        63 -----------------~-~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~-----------------  107 (343)
T 2xzm_R           63 -----------------G-YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT-----------------  107 (343)
T ss_dssp             -----------------S-BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS-----------------
T ss_pred             -----------------c-ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-----------------
Confidence                             0 00113456889999999999999999999999999999999987                 


Q ss_pred             CCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe---
Q 006424          249 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---  324 (645)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---  324 (645)
                                                  ++.+..+.+|...|.+++|+|++ +|++++.|++|++||+.........   
T Consensus       108 ----------------------------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  159 (343)
T 2xzm_R          108 ----------------------------GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE  159 (343)
T ss_dssp             ----------------------------SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTT
T ss_pred             ----------------------------CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeeccc
Confidence                                        44567888999999999999987 8999999999999999854443333   


Q ss_pred             cCCCcEEEEEEeeCCC----------CEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEE
Q 006424          325 DHHNYVTCVQFNPIDD----------NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCH  394 (645)
Q Consensus       325 ~~~~~v~~l~~~p~~~----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~  394 (645)
                      .|...|.+++|+| ++          .++++++.|+.|++||........+..|...|.+++|+|+|++|++|+.||.|+
T Consensus       160 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~  238 (343)
T 2xzm_R          160 NHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL  238 (343)
T ss_dssp             SCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             CCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEE
Confidence            4888999999999 55          789999999999999976655666788999999999999999999999999999


Q ss_pred             EEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--e--eEee---------cCCC
Q 006424          395 FYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--H--KFKG---------LPKS  461 (645)
Q Consensus       395 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~--~~~~---------~~~~  461 (645)
                      +||+...........       +...|.+++|+|++ .+++ ++.|+.|++||+....  .  .+..         ..|.
T Consensus       239 iwd~~~~~~~~~~~~-------~~~~v~~v~~sp~~-~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (343)
T 2xzm_R          239 IWDILNLTYPQREFD-------AGSTINQIAFNPKL-QWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN  309 (343)
T ss_dssp             EEESSCCSSCSEEEE-------CSSCEEEEEECSSS-CEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC
T ss_pred             EEECCCCcccceeec-------CCCcEEEEEECCCC-CEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCC
Confidence            999954443322221       12569999999997 5655 5568889999976322  1  2221         1467


Q ss_pred             CCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          462 GSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       462 ~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ..+.+++|+|+|++|++|+.||.|++|++.++
T Consensus       310 ~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            78999999999999999999999999998754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.9e-35  Score=299.62  Aligned_cols=247  Identities=18%  Similarity=0.267  Sum_probs=202.6

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .|...|++++|+|++ .|++|+.||+|+|||+.+++...                                         
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~-----------------------------------------  117 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI-----------------------------------------  117 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE-----------------------------------------
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee-----------------------------------------
Confidence            477889999999985 78899999999999998743211                                         


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      .....+.+|.+.|++++|+|++ +|++|+.|++|++||+++++++..+. |...|++++|+|.+..+|++++.|++|++|
T Consensus       118 ~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iw  197 (344)
T 4gqb_B          118 VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW  197 (344)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccc
Confidence            1123455899999999999997 89999999999999999999998885 999999999999444689999999999999


Q ss_pred             eCCCCcEEEe---eccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424          356 GVCEKRVVDW---ADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       356 d~~~~~~~~~---~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                      |+++++....   ..+...+.+++|+|+ ++++++|+.||.|++||+++.+.... +  .    .|...|++++|+|++.
T Consensus       198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~-~--~----~h~~~v~~v~fsp~g~  270 (344)
T 4gqb_B          198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS-S--A----VHSQCVTGLVFSPHSV  270 (344)
T ss_dssp             ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE-E--E----CCSSCEEEEEECSSSS
T ss_pred             cccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE-E--c----CCCCCEEEEEEccCCC
Confidence            9998876653   345567999999995 56889999999999999987765322 2  2    2457899999999986


Q ss_pred             cEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-EEEEEeCCccEEEEeCCCCC
Q 006424          432 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       432 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s~dg~I~iwd~~~~~  494 (645)
                      .+|++++.|++|+|||..... .+....|.+.|++++|+|+++ +|++||.||+|++|++.+..
T Consensus       271 ~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          271 PFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             eEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            789999999999999987543 344556899999999999986 57799999999999998763

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-35  Score=298.84  Aligned_cols=289  Identities=18%  Similarity=0.227  Sum_probs=234.2

Q ss_pred             hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424           95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK  174 (645)
Q Consensus        95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (645)
                      +..+|.+|...|..++|+|++.. +++.+.            |+.++.|                               
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~-l~s~~~------------dg~v~lW-------------------------------   40 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPW-VLTTLY------------SGRVELW-------------------------------   40 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSE-EEEEET------------TSEEEEE-------------------------------
T ss_pred             eEEeecCCCCceEEEEECCCCCE-EEEEcC------------CCcEEEE-------------------------------
Confidence            44578899999999999999887 777766            5555555                               


Q ss_pred             hHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceE
Q 006424          175 MEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI  254 (645)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (645)
                          .       .......+.+.+|..+|.+++|+|++++|++|+.|++|++||+.+                       
T Consensus        41 ----d-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~-----------------------   86 (304)
T 2ynn_A           41 ----N-------YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-----------------------   86 (304)
T ss_dssp             ----E-------TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-----------------------
T ss_pred             ----E-------CCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC-----------------------
Confidence                0       000113455778999999999999999999999999999999987                       


Q ss_pred             EecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC-eEEEEe-cCCCcEE
Q 006424          255 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVT  331 (645)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~-~~~~~~-~~~~~v~  331 (645)
                                            ++.+..+.+|...|.+++|+|++ +|++|+.|++|++||++++ .....+ +|...|.
T Consensus        87 ----------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~  144 (304)
T 2ynn_A           87 ----------------------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM  144 (304)
T ss_dssp             ----------------------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEE
T ss_pred             ----------------------CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEE
Confidence                                  45567888999999999999987 8999999999999999877 444455 5899999


Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE--EeeccCCCeEEEEEcc--CCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424          332 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV--DWADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEK  407 (645)
Q Consensus       332 ~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~v~~l~~sp--~g~~l~~g~~dg~i~iwd~~~~~~~~~~  407 (645)
                      +++|+|.++.+|++|+.|++|++||++.+...  ....+...+..+.|+|  ++.+|++|+.||.|++||+++...... 
T Consensus       145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~-  223 (304)
T 2ynn_A          145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT-  223 (304)
T ss_dssp             EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE-
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee-
Confidence            99999966789999999999999999875532  2345667899999987  778999999999999999987764322 


Q ss_pred             EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC--EEEEEeCCccE
Q 006424          408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HIISIGDDCRV  485 (645)
Q Consensus       408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~--~l~t~s~dg~I  485 (645)
                        +.    .|...|.+++|+|++ .+|++++.||.|++||..+.........+...+.+++|+|++.  ++++|++|| +
T Consensus       224 --~~----~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~  295 (304)
T 2ynn_A          224 --LE----GHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-F  295 (304)
T ss_dssp             --EE----CCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-E
T ss_pred             --eC----CCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-e
Confidence              22    245789999999997 7999999999999999886554444455788999999999875  577777555 7


Q ss_pred             EEEeCCC
Q 006424          486 YVWNYDE  492 (645)
Q Consensus       486 ~iwd~~~  492 (645)
                      .+|++.+
T Consensus       296 ~~~~~~~  302 (304)
T 2ynn_A          296 TVLSLGN  302 (304)
T ss_dssp             EEEECC-
T ss_pred             EEEEecc
Confidence            7777754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-35  Score=303.42  Aligned_cols=319  Identities=15%  Similarity=0.145  Sum_probs=241.9

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      |.++|.+++|+|||++++++..++.+.+|....                                             ..
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~---------------------------------------------~~   42 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR---------------------------------------------HA   42 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCS---------------------------------------------EE
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCC---------------------------------------------cc
Confidence            567899999999999999888777665554332                                             11


Q ss_pred             CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEE---EEe---cCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL---NVF---DHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~---~~~---~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                      ......+|...|++++|+|++ ++++++ ||.|++||+.++...   ..+   .|...|.+++|+| +++++++++.|+.
T Consensus        43 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~  120 (337)
T 1gxr_A           43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSE
T ss_pred             ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCc
Confidence            122334799999999999998 777777 999999999876432   222   5888999999999 9999999999999


Q ss_pred             EEEEeCCCCc---EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          352 VRIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       352 i~vwd~~~~~---~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      |++||+.+++   ...+..+...+.+++|+|+++++++++.||.|++||+++..... .+  .    .|...+.+++|+|
T Consensus       121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-~~--~----~~~~~i~~~~~~~  193 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR-QF--Q----GHTDGASCIDISN  193 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EE--C----CCSSCEEEEEECT
T ss_pred             EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-ee--e----cccCceEEEEECC
Confidence            9999999876   33467788899999999999999999999999999998765432 22  1    2357899999999


Q ss_pred             CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceee
Q 006424          429 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  508 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  508 (645)
                      ++ .++++++.|+.|++||++........ .+...+.+++|+|++++|++++.||.|++||+.++..           ..
T Consensus       194 ~~-~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----------~~  260 (337)
T 1gxr_A          194 DG-TKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----------YQ  260 (337)
T ss_dssp             TS-SEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----------EE
T ss_pred             CC-CEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----------EE
Confidence            97 89999999999999998865443333 3678899999999999999999999999999986521           00


Q ss_pred             eeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCcc
Q 006424          509 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI  588 (645)
Q Consensus       509 ~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~  588 (645)
                      ...+.+.+                                           .+++|+||++++++++. ++.|++||+.+
T Consensus       261 ~~~~~~~v-------------------------------------------~~~~~~~~~~~l~~~~~-dg~i~~~~~~~  296 (337)
T 1gxr_A          261 LHLHESCV-------------------------------------------LSLKFAYCGKWFVSTGK-DNLLNAWRTPY  296 (337)
T ss_dssp             ECCCSSCE-------------------------------------------EEEEECTTSSEEEEEET-TSEEEEEETTT
T ss_pred             EcCCccce-------------------------------------------eEEEECCCCCEEEEecC-CCcEEEEECCC
Confidence            11122333                                           44455555555555555 78899999887


Q ss_pred             CCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424          589 DSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                      ++          ......+........+++ |+.+|++++.||+|++|++.
T Consensus       297 ~~----------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          297 GA----------SIFQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             CC----------EEEEEECSSCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred             Ce----------EEEEecCCCcEEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence            73          111111222222234555 79999999999999999963

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-36  Score=320.71  Aligned_cols=205  Identities=12%  Similarity=0.116  Sum_probs=165.2

Q ss_pred             eeeccCccCeEEEEEcCC-------CeEEEEeCCCcEEEEecCCCeEE-----------EEe-cCCCcEEEEEEeeCCCC
Q 006424          281 QELHGHKGDVLDLAWSNS-------NYLLSCSMDKTVRMWQVGCNQCL-----------NVF-DHHNYVTCVQFNPIDDN  341 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~-------~~l~s~s~dg~I~iwd~~~~~~~-----------~~~-~~~~~v~~l~~~p~~~~  341 (645)
                      ..+.+|.+.|.+++|+|+       ++|++++.||+|++||+..+...           ..+ .|...|++++|+| + .
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~  278 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-T  278 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-S
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-C
Confidence            345678899999999985       38999999999999999766421           233 4888999999997 4 5


Q ss_pred             EEEEEeCCCcEEEEeCCCCc--EEEeeccCCCeEEE--EEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424          342 YFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAI--CYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  416 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~v~~l--~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  416 (645)
                      .|++|+.||+|++||++++.  ...+..|...|+++  .|+|+| .+|++|+.||+|++||+++........ .+.    
T Consensus       279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~----  353 (524)
T 2j04_B          279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRF----  353 (524)
T ss_dssp             EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EEC----
T ss_pred             eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-ccc----
Confidence            89999999999999998753  23467899999999  578888 899999999999999998765432211 111    


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ....|.+++|+|++ ..+++++.|++|++||++..........|.+.|++++|+|++++|++|+.||+|++||+...
T Consensus       354 ~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          354 RGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             SCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             ccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            01347899999997 78999999999999998854432223348899999999999999999999999999998653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2e-35  Score=316.46  Aligned_cols=393  Identities=17%  Similarity=0.257  Sum_probs=279.4

Q ss_pred             cccccccCCCCcccccChHhHHHHHHHHHHh-hcccchhhccccCCCCCC--------------CCccchhHh---hhcc
Q 006424          120 QSVDKFENPFPECKGVNIKKVKKLWKRIISM-KKRNVETCMSEKRKPNSE--------------KPKANKMEV---KQNK  181 (645)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~---~~~~  181 (645)
                      +.+.+|+.||+..++.....+.+-|+++... ...+-..+..+.......              .......+.   ....
T Consensus        21 ~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (464)
T 3v7d_B           21 EISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIF  100 (464)
T ss_dssp             HHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcccchhhHHHHHHhhh
Confidence            3456788888888888788888888887665 333333333222111100              000000000   0000


Q ss_pred             cccccc--cccccccccccccCcE-EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecc
Q 006424          182 KKCMEF--TALYTSQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK  258 (645)
Q Consensus       182 ~~~~~~--~~~~~~~~l~~H~~~V-~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (645)
                      ....+.  .......++.+|.+.| .++.|  ++++|++|+.||+|++||+.+                           
T Consensus       101 ~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~---------------------------  151 (464)
T 3v7d_B          101 ILKNWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN---------------------------  151 (464)
T ss_dssp             HHHHHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT---------------------------
T ss_pred             hHhhhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC---------------------------
Confidence            011111  1223456789999885 66666  567999999999999999987                           


Q ss_pred             cCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEee
Q 006424          259 KKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP  337 (645)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p  337 (645)
                                        ++.+..+.+|.+.|.+++|++++.+++|+.||+|++||+++++.+..+. |...|.+++|++
T Consensus       152 ------------------~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~  213 (464)
T 3v7d_B          152 ------------------KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE  213 (464)
T ss_dssp             ------------------TEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEE
T ss_pred             ------------------CcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEec
Confidence                              4456778899999999999998899999999999999999999988886 899999999995


Q ss_pred             -CCCCEEEEEeCCCcEEEEeCCCCc------------------------EEEeeccCCCeEEEEEccCCCEEEEEecCCe
Q 006424          338 -IDDNYFISGSIDGKVRIWGVCEKR------------------------VVDWADVRDVISAICYIPDGKGFIVGSITGT  392 (645)
Q Consensus       338 -~~~~~l~s~s~dg~i~vwd~~~~~------------------------~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~  392 (645)
                       .+++++++|+.|+.|++||++++.                        .....+|...+.++  +++++++++|+.||.
T Consensus       214 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~  291 (464)
T 3v7d_B          214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNT  291 (464)
T ss_dssp             SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSC
T ss_pred             CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCe
Confidence             266899999999999999998764                        23456677777776  678999999999999


Q ss_pred             EEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecC
Q 006424          393 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT  472 (645)
Q Consensus       393 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~  472 (645)
                      |++||+++......   +.    .|...|.+++|+|++ .++++++.||.|++||+.+.........|...|.+++|+  
T Consensus       292 i~vwd~~~~~~~~~---~~----~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--  361 (464)
T 3v7d_B          292 LIVWDVAQMKCLYI---LS----GHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--  361 (464)
T ss_dssp             EEEEETTTTEEEEE---EC----CCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--
T ss_pred             EEEEECCCCcEEEE---ec----CCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--
Confidence            99999987654322   22    245789999999997 899999999999999988666555566689999999997  


Q ss_pred             CCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCcc
Q 006424          473 GKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWI  552 (645)
Q Consensus       473 ~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~  552 (645)
                      +++|++++.||.|++||+.++..           ...+++...                                     
T Consensus       362 ~~~l~s~s~dg~v~vwd~~~~~~-----------~~~~~~~~~-------------------------------------  393 (464)
T 3v7d_B          362 DKFLVSAAADGSIRGWDANDYSR-----------KFSYHHTNL-------------------------------------  393 (464)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCE-----------EEEEECTTC-------------------------------------
T ss_pred             CCEEEEEeCCCcEEEEECCCCce-----------eeeecCCCC-------------------------------------
Confidence            68999999999999999986521           011111111                                     


Q ss_pred             CCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCe
Q 006424          553 RDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGM  632 (645)
Q Consensus       553 ~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~  632 (645)
                            +...+|+++++++++++  ++.|++||+.+++          ........+...+..+...++.++++++.||.
T Consensus       394 ------~~~~~~~~~~~~l~~~~--dg~i~iwd~~~g~----------~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~  455 (464)
T 3v7d_B          394 ------SAITTFYVSDNILVSGS--ENQFNIYNLRSGK----------LVHANILKDADQIWSVNFKGKTLVAAVEKDGQ  455 (464)
T ss_dssp             ------CCEEEEEECSSEEEEEE--TTEEEEEETTTCC----------EEESCTTTTCSEEEEEEEETTEEEEEEEETTE
T ss_pred             ------ccEEEEEeCCCEEEEec--CCeEEEEECCCCc----------EEehhhccCCCcEEEEEecCCEEEEEEEeCCe
Confidence                  22335666777666665  6789999998883          11111222333333333335667788888887


Q ss_pred             EeEEE
Q 006424          633 IKTFH  637 (645)
Q Consensus       633 Iriw~  637 (645)
                      +.+|-
T Consensus       456 ~~i~~  460 (464)
T 3v7d_B          456 SFLEI  460 (464)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76664

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.3e-35  Score=300.53  Aligned_cols=248  Identities=17%  Similarity=0.299  Sum_probs=200.8

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      ..+|.+.|++++|+|+++ +++++.||+|+|||+.++...                                        
T Consensus        90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~----------------------------------------  128 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESL----------------------------------------  128 (357)
T ss_dssp             EEECSSCEEEEEEETTTE-EEEEETTSCEEEC------------------------------------------------
T ss_pred             cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeecccccee----------------------------------------
Confidence            457999999999999986 556788999999999874321                                        


Q ss_pred             cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVR  353 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~  353 (645)
                       ........+|...|++++|+|++ +|++|+.|++|++||+++++++..+. |...|++++|+|....++++++.|+.|+
T Consensus       129 -~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~  207 (357)
T 4g56_B          129 -LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL  207 (357)
T ss_dssp             -CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred             -EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceE
Confidence             11123455899999999999997 89999999999999999999998885 8999999999994445899999999999


Q ss_pred             EEeCCCCcEEE---eeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          354 IWGVCEKRVVD---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       354 vwd~~~~~~~~---~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      +||+++++...   ...+...+.+++|+|+ +.+|++|+.|+.|++||+++...... +  .    .|...|++++|+|+
T Consensus       208 ~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~--~----~~~~~v~~l~~sp~  280 (357)
T 4g56_B          208 LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-S--A----VHSQNITGLAYSYH  280 (357)
T ss_dssp             ECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-E--C----CCSSCEEEEEECSS
T ss_pred             EEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-E--e----ccceeEEEEEEcCC
Confidence            99999877554   3456778999999997 46889999999999999987764322 2  2    23578999999999


Q ss_pred             CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCC
Q 006424          430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +..+|++++.|++|+|||+.... .+....|...|++++|+| ++++|++|+.||+|++|++...
T Consensus       281 ~~~~lasgs~D~~i~iwd~~~~~-~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          281 SSPFLASISEDCTVAVLDADFSE-VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SSCCEEEEETTSCEEEECTTSCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CCCEEEEEeCCCEEEEEECCCCc-EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            86789999999999999987543 334446899999999998 7999999999999999999764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7e-35  Score=294.91  Aligned_cols=292  Identities=23%  Similarity=0.314  Sum_probs=236.1

Q ss_pred             chhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccc
Q 006424           94 CMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKAN  173 (645)
Q Consensus        94 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (645)
                      .+...|.+|...|..++|+|++.. +++.+.            |+.++.|-                             
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~-l~s~~~------------dg~i~iw~-----------------------------   51 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEW-LASSSA------------DKLIKIWG-----------------------------   51 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSE-EEEEET------------TSCEEEEE-----------------------------
T ss_pred             eeEEEEcccCCcEEEEEECCCCCE-EEEeeC------------CCeEEEEe-----------------------------
Confidence            345578899999999999999876 666666            55444440                             


Q ss_pred             hhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCce
Q 006424          174 KMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK  253 (645)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (645)
                                   .......+.+.+|...|.+++|+|++++|++|+.||.|++||+.+                      
T Consensus        52 -------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~----------------------   96 (312)
T 4ery_A           52 -------------AYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS----------------------   96 (312)
T ss_dssp             -------------TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------
T ss_pred             -------------CCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC----------------------
Confidence                         000012345778999999999999999999999999999999987                      


Q ss_pred             EEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEE
Q 006424          254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVT  331 (645)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~  331 (645)
                                             .+.+..+.+|...|.+++|+|++ +|++|+.|+.|++||+++++.+..+. |...|.
T Consensus        97 -----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  153 (312)
T 4ery_A           97 -----------------------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS  153 (312)
T ss_dssp             -----------------------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             -----------------------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEE
Confidence                                   44567788999999999999987 89999999999999999999888875 888999


Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe--eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424          332 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD  409 (645)
Q Consensus       332 ~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~  409 (645)
                      +++|+| ++++|++++.|+.|++||+++++....  ..+...+..++|+|+++++++++.||.|++||+++......   
T Consensus       154 ~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---  229 (312)
T 4ery_A          154 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT---  229 (312)
T ss_dssp             EEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE---
T ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE---
Confidence            999999 999999999999999999998876653  34567899999999999999999999999999987764322   


Q ss_pred             eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe--CCccEEE
Q 006424          410 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYV  487 (645)
Q Consensus       410 ~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s--~dg~I~i  487 (645)
                      +..+..  ........+++.+..++++++.||.|++||+...........|...|.+++|+|++++|++++  .|++|++
T Consensus       230 ~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~  307 (312)
T 4ery_A          230 YTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL  307 (312)
T ss_dssp             ECSSCC--SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEE
T ss_pred             EEecCC--ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEE
Confidence            222111  111222344433338999999999999999886555555556889999999999999999997  6999999


Q ss_pred             EeCC
Q 006424          488 WNYD  491 (645)
Q Consensus       488 wd~~  491 (645)
                      |+.+
T Consensus       308 W~~d  311 (312)
T 4ery_A          308 WKSD  311 (312)
T ss_dssp             EECC
T ss_pred             ecCC
Confidence            9965

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-35  Score=299.53  Aligned_cols=302  Identities=22%  Similarity=0.313  Sum_probs=220.4

Q ss_pred             hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424           95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK  174 (645)
Q Consensus        95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (645)
                      ++.+|.+|...|+.+.|+++  . +++.+.            |+.++.|-          +    .              
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~-las~~~------------D~~i~lw~----------~----~--------------   42 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--I-LATGST------------DRKIKLVS----------V----K--------------   42 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--E-EEEEES------------SSCEEEEE----------C----S--------------
T ss_pred             cceeeccCCCceeeeccCCC--E-EEEEcC------------CCEEEEEE----------e----c--------------
Confidence            45678899999999999987  3 777766            55555540          0    0              


Q ss_pred             hHhhhccccccccccccccccc-c-cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCc
Q 006424          175 MEVKQNKKKCMEFTALYTSQEI-Q-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG  252 (645)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l-~-~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  252 (645)
                             ..     .......+ . +|.+.|++++|+|++++|++|+.|++|++||+......                 
T Consensus        43 -------~~-----~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~-----------------   93 (330)
T 2hes_X           43 -------YD-----DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR-----------------   93 (330)
T ss_dssp             -------SS-----CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-----------------------
T ss_pred             -------CC-----CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-----------------
Confidence                   00     00012223 2 49999999999999999999999999999998642100                 


Q ss_pred             eEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC----CeEEEEe-cC
Q 006424          253 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----NQCLNVF-DH  326 (645)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~----~~~~~~~-~~  326 (645)
                                           ......+..+.+|...|.+++|+|++ +|++|+.|++|++||+..    .+++..+ .|
T Consensus        94 ---------------------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h  152 (330)
T 2hes_X           94 ---------------------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH  152 (330)
T ss_dssp             ----------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC
T ss_pred             ---------------------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC
Confidence                                 00123456788999999999999997 899999999999999943    2455555 48


Q ss_pred             CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC--c-EEEeeccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCC
Q 006424          327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK--R-VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGN  401 (645)
Q Consensus       327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~--~-~~~~~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~  401 (645)
                      ...|.+++|+| ++++|++|+.|++|++||..++  + ...+.+|...|.+++|+|+  +..|++|+.|++|++||+...
T Consensus       153 ~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          153 SQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             SSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             CCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            89999999999 9999999999999999998765  2 3456789999999999998  778999999999999999754


Q ss_pred             ceee-eEEee-ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--eeE-eecCCCC-CeEEEEEec--CC
Q 006424          402 DLKL-EKVDF-HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKF-KGLPKSG-SQMSASFTT--TG  473 (645)
Q Consensus       402 ~~~~-~~~~~-~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~~~-~~~~~~~-~i~~v~~sp--~~  473 (645)
                      .... ..... ......|...|.+++|++++  +|++++.||.|++||.....  ... ....|.. .|.+++|+|  ++
T Consensus       232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~  309 (330)
T 2hes_X          232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGK  309 (330)
T ss_dssp             CTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----
T ss_pred             CccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCc
Confidence            2110 00001 11111256889999999774  89999999999999976432  111 1234665 899999999  78


Q ss_pred             CEEEEEeCCccEEEEeCCC
Q 006424          474 KHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       474 ~~l~t~s~dg~I~iwd~~~  492 (645)
                      ++|++|+.||+|++||++.
T Consensus       310 ~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          310 TILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CCEEEEETTSEEEEEEC--
T ss_pred             eEEEEecCCCcEEEEEecc
Confidence            9999999999999999865

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-34  Score=300.56  Aligned_cols=250  Identities=24%  Similarity=0.433  Sum_probs=209.6

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .+...|++++|+|+|++|++|+.||.|++||+.+                                             .
T Consensus       121 ~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~---------------------------------------------~  155 (393)
T 1erj_A          121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN---------------------------------------------R  155 (393)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT---------------------------------------------T
T ss_pred             CCceeEEEEEECCCCCEEEEEcCCCeEEEEECCC---------------------------------------------C
Confidence            3556799999999999999999999999999986                                             3


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  356 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd  356 (645)
                      +.+..+.+|...|.+++|+|++ +|++++.|++|++||++++++...+.+...+.+++|+|.+++++++|+.|+.|++||
T Consensus       156 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd  235 (393)
T 1erj_A          156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD  235 (393)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred             cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            4467788999999999999987 899999999999999999999988888889999999997889999999999999999


Q ss_pred             CCCCcEEEe--------eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE-----EeeccccccCCCCeEE
Q 006424          357 VCEKRVVDW--------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-----VDFHDRKKTSGNKITG  423 (645)
Q Consensus       357 ~~~~~~~~~--------~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~i~~  423 (645)
                      ++++.....        .+|...|.+++|+|+|++|++|+.||.|++||++........     .........|...|.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  315 (393)
T 1erj_A          236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS  315 (393)
T ss_dssp             TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred             CCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEE
Confidence            998876543        468889999999999999999999999999999764321110     0000111234678999


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEec------CCCEEEEEeCCccEEEEeCCCC
Q 006424          424 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT------TGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp------~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ++|+|++ .+|++++.|+.|++||............|...|.+++|++      ++++|++|+.||+|+||++...
T Consensus       316 ~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          316 VATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            9999997 7999999999999999876554444555889999999986      6889999999999999998643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-34  Score=296.08  Aligned_cols=239  Identities=21%  Similarity=0.336  Sum_probs=205.8

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ....|.+|.+.|++++|+|++++|++|+.||.|++||+.+                                        
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------------------------------------   63 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN----------------------------------------   63 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT----------------------------------------
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----------------------------------------
Confidence            3455889999999999999999999999999999999987                                        


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC-
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-  349 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d-  349 (645)
                           ++.+..+.+|...|.+++|+|++ +|++++.||.|++||+.+++.+..+.+...+.+++|+| +++++++++.+ 
T Consensus        64 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~  137 (369)
T 3zwl_B           64 -----GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNV  137 (369)
T ss_dssp             -----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSSEEEEEECCB
T ss_pred             -----chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEcc-CCCEEEEecCCc
Confidence                 45567888999999999999987 89999999999999999999999999999999999999 99999999998 


Q ss_pred             ----CcEEEEeCCCCc------------EEEeeccCC--CeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeec
Q 006424          350 ----GKVRIWGVCEKR------------VVDWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH  411 (645)
Q Consensus       350 ----g~i~vwd~~~~~------------~~~~~~~~~--~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  411 (645)
                          +.|++||+....            ......+..  .+.+++|+|+++++++++.||.|++||++........+.. 
T Consensus       138 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-  216 (369)
T 3zwl_B          138 MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL-  216 (369)
T ss_dssp             TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC-
T ss_pred             cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec-
Confidence                999999987542            223344444  8999999999999999999999999999874443333332 


Q ss_pred             cccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424          412 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR  484 (645)
Q Consensus       412 ~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~  484 (645)
                           |...|.+++|+|++ .+|++++.|+.|++||+.......... +...+..++|+|+++++++++.++.
T Consensus       217 -----~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~  282 (369)
T 3zwl_B          217 -----HEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEA  282 (369)
T ss_dssp             -----CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-
T ss_pred             -----CCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCC
Confidence                 24789999999997 899999999999999988544333333 6788999999999999999999983

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.1e-35  Score=310.40  Aligned_cols=245  Identities=13%  Similarity=0.123  Sum_probs=198.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      ..+++++|+|+|++|++|+.||.|++||+.+.                                             ...
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~---------------------------------------------~~~   91 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIR---------------------------------------------DGS   91 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSE---------------------------------------------ETT
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEeccc---------------------------------------------cee
Confidence            34568999999999999999999999998762                                             222


Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  358 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  358 (645)
                      ..+.+| ..+....|++++ +|++|+.||.|++||+.+++....+ .|...|++++|+| ++++|++|+.|+.|++||++
T Consensus        92 ~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~  169 (420)
T 3vl1_A           92 KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVK  169 (420)
T ss_dssp             TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence            333444 344455678887 8999999999999999999998887 6999999999999 99999999999999999998


Q ss_pred             CCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccc------------------ccCCC
Q 006424          359 EKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK------------------KTSGN  419 (645)
Q Consensus       359 ~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~------------------~~~~~  419 (645)
                      +++.. .+..|...|.+++|+|++++|++++.||.|++||+++...... +..+...                  ..+..
T Consensus       170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT-FNRKENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE-ECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE-eecCCCCCCCccEEEEecCCcceeeecccC
Confidence            87654 4678999999999999999999999999999999987754332 2111100                  01124


Q ss_pred             CeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEee-cCCCCCeEEEEEecCCC-EEEEEeCCccEEEEeCCCCC
Q 006424          420 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       420 ~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp~~~-~l~t~s~dg~I~iwd~~~~~  494 (645)
                      .+.+++|+|++ .++++++.||.|++||++........ ..|...|.+++|+|+++ +|++|+.||.|++||+.++.
T Consensus       249 ~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          249 KKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             CCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred             cccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            45556668887 89999999999999998865444443 34778999999999999 99999999999999998763

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.3e-34  Score=298.14  Aligned_cols=251  Identities=17%  Similarity=0.271  Sum_probs=207.0

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      +..|.++|++++|+|++++|++|+.||.|++||+.++.                                          
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------------------------------------------   41 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------------------------------------------   41 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------------------------------------------
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------------------------------------------
Confidence            45699999999999999999999999999999997621                                          


Q ss_pred             cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE---ecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                       ...+..+.+|...|.+++|+|++ +|++++.||.|++||+++++....   ..|...|.+++|+| ++++|++++.|+.
T Consensus        42 -~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~  119 (372)
T 1k8k_C           42 -WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRV  119 (372)
T ss_dssp             -EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSS
T ss_pred             -EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCE
Confidence             11467788999999999999987 899999999999999998875544   35888999999999 9999999999999


Q ss_pred             EEEEeCCCCc----EEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceee-----------eEEeeccccc
Q 006424          352 VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-----------EKVDFHDRKK  415 (645)
Q Consensus       352 i~vwd~~~~~----~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~-----------~~~~~~~~~~  415 (645)
                      |++||++.+.    ... ...|...|.+++|+|+++++++++.||.|++||++......           ..........
T Consensus       120 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
T 1k8k_C          120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS  199 (372)
T ss_dssp             EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred             EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence            9999998865    222 35678899999999999999999999999999975221000           0000001111


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          416 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       416 ~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      .|...+.+++|+|++ .+|++++.|+.|++||+...........|...|.+++|+|++++|++| .|+.|++|++.+
T Consensus       200 ~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          200 SSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             CCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            345789999999997 799999999999999987554444444578899999999999988888 899999999987

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.1e-34  Score=322.93  Aligned_cols=312  Identities=16%  Similarity=0.242  Sum_probs=239.5

Q ss_pred             cccccccccccCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          190 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       190 ~~~~~~l~~H~~~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      +.....|++|.+.|++++|+|++ ++|+||+.||+|++|++.+....                                 
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~---------------------------------  418 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA---------------------------------  418 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC---------------------------------
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc---------------------------------
Confidence            33445689999999999999875 79999999999999998762110                                 


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEE
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                             .......+.+|...|.+++|+|++ +|++|+.||+|++||+.+++.+..+ .|...|.+++|+| ++++|++|
T Consensus       419 -------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~  490 (694)
T 3dm0_A          419 -------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSA  490 (694)
T ss_dssp             -------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEE
T ss_pred             -------cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEE
Confidence                   012346788999999999999997 8999999999999999999988877 5999999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCcEEEe----eccCCCeEEEEEccCC--CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          347 SIDGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~~----~~~~~~v~~l~~sp~g--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      +.|++|++||.........    .+|...|.+++|+|++  ..+++|+.||.|++||+++......   +    ..|...
T Consensus       491 s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~---~----~~h~~~  563 (694)
T 3dm0_A          491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST---L----AGHTGY  563 (694)
T ss_dssp             ETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE---E----CCCSSC
T ss_pred             eCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE---E----cCCCCC
Confidence            9999999999877655443    3578889999999987  5899999999999999987664322   2    234588


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ  500 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~  500 (645)
                      |++++|+|++ .+|++++.|+.|++||+.+........ +...+.+++|+|++.+|++++ |+.|++||+.++...... 
T Consensus       564 v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~-  639 (694)
T 3dm0_A          564 VSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDL-  639 (694)
T ss_dssp             EEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE-
T ss_pred             EEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhh-
Confidence            9999999998 899999999999999998665544433 567899999999999888876 556999999876321110 


Q ss_pred             cCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCc
Q 006424          501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK  580 (645)
Q Consensus       501 ~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~  580 (645)
                                ..+...........+                       ......+..++++++|||||+++++++. |+.
T Consensus       640 ----------~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~spdg~~l~sgs~-Dg~  685 (694)
T 3dm0_A          640 ----------KVDLKAEAEKADNSG-----------------------PAATKRKVIYCTSLNWSADGSTLFSGYT-DGV  685 (694)
T ss_dssp             ----------CCCCC---------------------------------------CCCCEEEEEECTTSSEEEEEET-TSE
T ss_pred             ----------ccccccccccccccc-----------------------cccCCceeEEeeeEEEcCCCCEEEEEcC-CCe
Confidence                      000000000000000                       0000112224677899999999999998 999


Q ss_pred             CCCCCCc
Q 006424          581 LPLWDVT  587 (645)
Q Consensus       581 i~iWd~~  587 (645)
                      |++|++.
T Consensus       686 i~iW~i~  692 (694)
T 3dm0_A          686 IRVWGIG  692 (694)
T ss_dssp             EEEEEC-
T ss_pred             EEEEecc
Confidence            9999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-35  Score=302.16  Aligned_cols=255  Identities=20%  Similarity=0.295  Sum_probs=213.8

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      +.+.+.+|.+.|++++|+|++++||+|+.||.|++||+....                                      
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--------------------------------------   44 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--------------------------------------   44 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--------------------------------------
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--------------------------------------
Confidence            356788999999999999999999999999999999997421                                      


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCC--C-eEEEEeCCCcEEEEecCCCe--EEEEe-cCCCcEEEEEEeeCC--CCEE
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYF  343 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~--~-~l~s~s~dg~I~iwd~~~~~--~~~~~-~~~~~v~~l~~~p~~--~~~l  343 (645)
                           ...+..+.+|...|++++|+++  + +|++|+.||.|++||+.+++  .+..+ .|...|.+++|+| +  ++++
T Consensus        45 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l  118 (379)
T 3jrp_A           45 -----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLL  118 (379)
T ss_dssp             -----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEE
T ss_pred             -----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEE
Confidence                 3345678899999999999865  4 89999999999999999986  44444 4889999999999 7  8999


Q ss_pred             EEEeCCCcEEEEeCCCC---cEEEeeccCCCeEEEEEcc-------------CCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424          344 ISGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLEK  407 (645)
Q Consensus       344 ~s~s~dg~i~vwd~~~~---~~~~~~~~~~~v~~l~~sp-------------~g~~l~~g~~dg~i~iwd~~~~~~~~~~  407 (645)
                      ++++.|+.|++||++.+   ....+..|...|.+++|+|             ++.++++++.||.|++||++........
T Consensus       119 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  198 (379)
T 3jrp_A          119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  198 (379)
T ss_dssp             EEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             EEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence            99999999999999876   3445678899999999999             6999999999999999999876543221


Q ss_pred             EeeccccccCCCCeEEEEEcCCC--CcEEEEEECCCeEEEEECCcc-----eeeEeecCCCCCeEEEEEecCCCEEEEEe
Q 006424          408 VDFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDV-----IHKFKGLPKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       408 ~~~~~~~~~~~~~i~~i~~s~~g--~~~l~~~s~dg~I~iwd~~~~-----~~~~~~~~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      ..   ....|...|.+++|+|++  ..+|++++.||.|++||+...     ........+...|.+++|+|++++|++++
T Consensus       199 ~~---~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  275 (379)
T 3jrp_A          199 ES---TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  275 (379)
T ss_dssp             EE---EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             EE---EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence            11   122346889999999993  389999999999999998753     23333344788999999999999999999


Q ss_pred             CCccEEEEeCCCC
Q 006424          481 DDCRVYVWNYDEL  493 (645)
Q Consensus       481 ~dg~I~iwd~~~~  493 (645)
                      .||.|++|++...
T Consensus       276 ~dg~i~iw~~~~~  288 (379)
T 3jrp_A          276 GDNKVTLWKENLE  288 (379)
T ss_dssp             SSSSEEEEEEEET
T ss_pred             CCCcEEEEeCCCC
Confidence            9999999999854

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-35  Score=309.41  Aligned_cols=335  Identities=11%  Similarity=0.115  Sum_probs=223.7

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      ++.|.++|++++|+|+|++|++|+.||.|++||+.++.                                          
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~------------------------------------------   44 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG------------------------------------------   44 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE------------------------------------------
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc------------------------------------------
Confidence            44577899999999999999999999999999998621                                          


Q ss_pred             cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe---EEE-EecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLN-VFDHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~---~~~-~~~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                       ...+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++   ... ...|...|.+++|+| ++++|++++.|+
T Consensus        45 -~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~  122 (377)
T 3dwl_C           45 -WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGAR  122 (377)
T ss_dssp             -EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSS
T ss_pred             -eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCC
Confidence             03456778899999999999987 89999999999999999877   333 346999999999999 999999999999


Q ss_pred             cEEEEeCCCCc----EEEeec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceee-----------eEEeecccc
Q 006424          351 KVRIWGVCEKR----VVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-----------EKVDFHDRK  414 (645)
Q Consensus       351 ~i~vwd~~~~~----~~~~~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~-----------~~~~~~~~~  414 (645)
                      .|++||+++++    ...+.. |...|.+++|+|++++|++++.||.|++||+.......           .........
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (377)
T 3dwl_C          123 VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY  202 (377)
T ss_dssp             CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC
T ss_pred             eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc
Confidence            99999999876    445556 89999999999999999999999999999996432111           001111111


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee----eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                       .|...|.+++|+|++ .+|++++.|+.|++||+.....    ......|...|.+++|+|++++|++|+.|+.+ +|+.
T Consensus       203 -~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          203 -PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             -CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             -cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence             467889999999998 7999999999999999875433    33334488899999999999999999866665 7766


Q ss_pred             CCCCcCCCcccCCcceeeee-------ecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCcc
Q 006424          491 DELCFPSSKQKNSVRSCEHF-------FSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSW  563 (645)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  563 (645)
                      ....................       .......++.|+.....+......+...        ........|...++++.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~H~~~i~~~~  351 (377)
T 3dwl_C          280 NESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ--------SISSLPTVHQNMIATLR  351 (377)
T ss_dssp             CC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------------------------------CCCSSSCSSCEEEEE
T ss_pred             CCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccc--------cccccCccccceeEEEe
Confidence            54321111110000000000       0001122333333322222111111000        11122345777788888


Q ss_pred             ccCCCC----CCcCCCCCCCcCCCCCC
Q 006424          564 FSNDGP----CRGSATWPAEKLPLWDV  586 (645)
Q Consensus       564 fs~dg~----~l~s~s~~d~~i~iWd~  586 (645)
                      +.++..    .++|++. ||+|++||+
T Consensus       352 ~~~~~~~~~~~~~s~g~-Dg~i~iWdl  377 (377)
T 3dwl_C          352 PYAGTPGNITAFTSSGT-DGRVVLWTL  377 (377)
T ss_dssp             EEEEETTEEEEEEEEET-TSEEEEECC
T ss_pred             ccCCCCCceEEEEeecC-CCcEEEecC
Confidence            666543    4888888 999999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.1e-33  Score=296.04  Aligned_cols=254  Identities=14%  Similarity=0.195  Sum_probs=207.7

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ..+.+.+|.+.|++++|+|  ++|++|+.||.|++||+.+.....                                   
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~-----------------------------------   50 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN-----------------------------------   50 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC-----------------------------------
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc-----------------------------------
Confidence            4567889999999999999  799999999999999998732100                                   


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCC----C----eEEEEeCCCcEEEEecCCCeE-----EEEec-C-----CCcEEE
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNS----N----YLLSCSMDKTVRMWQVGCNQC-----LNVFD-H-----HNYVTC  332 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~----~----~l~s~s~dg~I~iwd~~~~~~-----~~~~~-~-----~~~v~~  332 (645)
                          ....+..+.+|...|.+++|+|+    +    +|++++.||.|++||+.+++.     +..+. |     ...|.+
T Consensus        51 ----~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  126 (397)
T 1sq9_A           51 ----PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA  126 (397)
T ss_dssp             ----GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEE
T ss_pred             ----CCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEE
Confidence                01246777899999999999988    4    789999999999999988875     55554 5     489999


Q ss_pred             EEEe----eCCCCE-EEEEeCCCcEEEEeCCC------CcEE------Ee-------eccCCCeEEEEEccCCCEEEEEe
Q 006424          333 VQFN----PIDDNY-FISGSIDGKVRIWGVCE------KRVV------DW-------ADVRDVISAICYIPDGKGFIVGS  388 (645)
Q Consensus       333 l~~~----p~~~~~-l~s~s~dg~i~vwd~~~------~~~~------~~-------~~~~~~v~~l~~sp~g~~l~~g~  388 (645)
                      ++|+    | ++++ |++++.||.|++||+++      ++..      .+       ..|...+.+++|+|++ ++++++
T Consensus       127 ~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~  204 (397)
T 1sq9_A          127 LKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF  204 (397)
T ss_dssp             EEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC
T ss_pred             EEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe
Confidence            9999    9 8999 99999999999999987      4432      33       3478899999999999 999999


Q ss_pred             cCCeEEEEEecCCceeeeEEeeccccccC---CCCeEEEEEcCCCCcEEEEEECC---CeEEEEECCcceeeEeecC---
Q 006424          389 ITGTCHFYKASGNDLKLEKVDFHDRKKTS---GNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLP---  459 (645)
Q Consensus       389 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~i~~i~~s~~g~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~---  459 (645)
                      .||.|++||+++..... .+..   ...|   ...|.+++|+|++ .+|++++.|   +.|++||+...........   
T Consensus       205 ~dg~i~i~d~~~~~~~~-~~~~---~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~  279 (397)
T 1sq9_A          205 NNGTVQISELSTLRPLY-NFES---QHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH  279 (397)
T ss_dssp             TTSEEEEEETTTTEEEE-EEEC---CC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred             CCCcEEEEECCCCceeE-EEec---cccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence            99999999998765432 2222   0113   4789999999997 899999999   9999999886554444444   


Q ss_pred             ----------CCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          460 ----------KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       460 ----------~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                                |...|.+++|+|++++|++++.||.|++||+.++
T Consensus       280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             ------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             cccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence                      7889999999999999999999999999999876

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.9e-35  Score=309.45  Aligned_cols=253  Identities=13%  Similarity=0.168  Sum_probs=197.1

Q ss_pred             cccccccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          192 TSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      ..+...+|...|+||+|+| ++++||+|+.||.|+|||+.++.                                     
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-------------------------------------  153 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-------------------------------------  153 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS-------------------------------------
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-------------------------------------
Confidence            4455678999999999999 56799999999999999997632                                     


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEE
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s  345 (645)
                            ......+.+|.+.|++++|+| ++ +|++|+.||+|++||++++.......   +...+.+++|+| ++++|++
T Consensus       154 ------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  226 (435)
T 4e54_B          154 ------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVT  226 (435)
T ss_dssp             ------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEE
T ss_pred             ------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEE
Confidence                  122345668999999999997 44 99999999999999998766544443   344688999999 9999999


Q ss_pred             EeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424          346 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                      |+.||.|++||+++..+..+..|...|++++|+|++. ++++|+.|+.|++||++.........    ....|...|+++
T Consensus       227 g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~----~~~~h~~~v~~~  302 (435)
T 4e54_B          227 GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL----YSLPHRHPVNAA  302 (435)
T ss_dssp             ECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS----BCCBCSSCEEEC
T ss_pred             EeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE----Eeeeccccccce
Confidence            9999999999999888778889999999999999886 78889999999999998765432211    122356889999


Q ss_pred             EEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCC------CCeEEEEEecCCCEEEEEeC------------CccEE
Q 006424          425 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS------GSQMSASFTTTGKHIISIGD------------DCRVY  486 (645)
Q Consensus       425 ~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~------~~i~~v~~sp~~~~l~t~s~------------dg~I~  486 (645)
                      +|+|+| .+|++++.|+.|++||+...........|.      ..+....|+|++.++++++.            ++.|+
T Consensus       303 ~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~  381 (435)
T 4e54_B          303 CFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTID  381 (435)
T ss_dssp             CBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEE
T ss_pred             eECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEE
Confidence            999998 899999999999999987543322221121      12345567777777766642            34577


Q ss_pred             EEeCCCC
Q 006424          487 VWNYDEL  493 (645)
Q Consensus       487 iwd~~~~  493 (645)
                      +||..++
T Consensus       382 iwd~~~g  388 (435)
T 4e54_B          382 VFDGNSG  388 (435)
T ss_dssp             EECSSSC
T ss_pred             EEECCCC
Confidence            7776654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.5e-33  Score=300.25  Aligned_cols=327  Identities=17%  Similarity=0.274  Sum_probs=247.2

Q ss_pred             ccccccccccCcE-EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          191 YTSQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       191 ~~~~~l~~H~~~V-~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      ...+.+.+|.+.| +|+.  ++|++|++|+.||+|++||+.+                                      
T Consensus       109 ~~~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~--------------------------------------  148 (445)
T 2ovr_B          109 KSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVT--------------------------------------  148 (445)
T ss_dssp             CCCEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTT--------------------------------------
T ss_pred             ceeEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCC--------------------------------------
Confidence            3556789999975 5544  4689999999999999999987                                      


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~  348 (645)
                             ++.+..+.+|.+.|.+++|+ ++.+++|+.||+|++||+.+++.+..+. |...|.++.|+   ++.+++|+.
T Consensus       149 -------~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~  217 (445)
T 2ovr_B          149 -------GKCLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSR  217 (445)
T ss_dssp             -------CCEEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEET
T ss_pred             -------CcEEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec---CCEEEEEeC
Confidence                   44567788999999999998 4599999999999999999999988885 88999999995   578999999


Q ss_pred             CCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424          349 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  427 (645)
Q Consensus       349 dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s  427 (645)
                      ||.|++||+++++... +..|...+.+++|  +++++++|+.||.|++||+++...... +  .    .|...|.++.| 
T Consensus       218 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-~--~----~~~~~v~~~~~-  287 (445)
T 2ovr_B          218 DATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT-L--Q----GHTNRVYSLQF-  287 (445)
T ss_dssp             TSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEE-E--C----CCSSCEEEEEE-
T ss_pred             CCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEE-e--c----CCCCceEEEEE-
Confidence            9999999999877654 6678999999998  788999999999999999987654322 1  2    24578999999 


Q ss_pred             CCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCccee
Q 006424          428 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC  507 (645)
Q Consensus       428 ~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  507 (645)
                       ++ .++++++.|+.|++||+.+.........|...+.++.+  +++++++|+.||.|++||+.+++........     
T Consensus       288 -~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----  358 (445)
T 2ovr_B          288 -DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGP-----  358 (445)
T ss_dssp             -CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECST-----
T ss_pred             -CC-CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccC-----
Confidence             54 78999999999999998865555555567888888877  4679999999999999999866211100000     


Q ss_pred             eeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCc
Q 006424          508 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT  587 (645)
Q Consensus       508 ~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~  587 (645)
                        ..+.+.+.+++                                           |  ++.++++++. |+.|++||+.
T Consensus       359 --~~~~~~v~~~~-------------------------------------------~--~~~~l~s~~~-dg~v~iwd~~  390 (445)
T 2ovr_B          359 --NKHQSAVTCLQ-------------------------------------------F--NKNFVITSSD-DGTVKLWDLK  390 (445)
T ss_dssp             --TSCSSCEEEEE-------------------------------------------E--CSSEEEEEET-TSEEEEEETT
T ss_pred             --CCCCCCEEEEE-------------------------------------------E--CCCEEEEEeC-CCeEEEEECC
Confidence              00122333333                                           3  2345566665 8899999998


Q ss_pred             cCCCCCcCChhhhHhhhhhccCCC--CCccCCCCcceEEEEecCCCe----EeEEEecCcc
Q 006424          588 IDSDGYCQDPQQQRLQQQCLNNVD--DVRAISATWGLVIVTAGCDGM----IKTFHNYGLP  642 (645)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~ivt~s~Dg~----Iriw~~~g~~  642 (645)
                      +++..  .    .........+.+  ..+++++ ++.++++|+.||+    |.+|++..-|
T Consensus       391 ~~~~~--~----~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~~~  444 (445)
T 2ovr_B          391 TGEFI--R----NLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDVDM  444 (445)
T ss_dssp             TCCEE--E----EEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred             CCcee--e----eeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCCCC
Confidence            87300  0    000000112222  2245555 7999999999998    9999988655

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.6e-33  Score=283.32  Aligned_cols=273  Identities=15%  Similarity=0.233  Sum_probs=223.5

Q ss_pred             ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      .+|.+.|++++|+|++++|++++ ||.|++||+.++..                                          
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~------------------------------------------   84 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN------------------------------------------   84 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC------------------------------------------
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc------------------------------------------
Confidence            37999999999999999999999 99999999986321                                          


Q ss_pred             CCCceeec--cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe--EEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          277 ESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       277 ~~~~~~l~--~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~--~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                      ......+.  +|...|.+++|+|++ +|++++.|+.|++||+.+++  ....+ .|...|.+++|+| +++++++++.|+
T Consensus        85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg  163 (337)
T 1gxr_A           85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDG  163 (337)
T ss_dssp             CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCC
Confidence            12233333  789999999999987 89999999999999999877  33334 4888999999999 999999999999


Q ss_pred             cEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          351 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       351 ~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      .|++||+++++... +..|...+.+++|+|+++++++++.||.|++||+++...... ..       +...+.+++|+|+
T Consensus       164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~-------~~~~v~~~~~s~~  235 (337)
T 1gxr_A          164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HD-------FTSQIFSLGYCPT  235 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EE-------CSSCEEEEEECTT
T ss_pred             cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-ec-------CCCceEEEEECCC
Confidence            99999999887665 566899999999999999999999999999999987764332 21       2367999999999


Q ss_pred             CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeee
Q 006424          430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  509 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  509 (645)
                      + .++++++.|+.|++||...... .....|...|.+++|+|++++|++++.||.|++||+.+++..           ..
T Consensus       236 ~-~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-----------~~  302 (337)
T 1gxr_A          236 G-EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-----------FQ  302 (337)
T ss_dssp             S-SEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-----------EE
T ss_pred             C-CEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-----------EE
Confidence            8 8999999999999999875433 344568899999999999999999999999999999876321           12


Q ss_pred             eecCCcEEEEecCCCCccccccCCC
Q 006424          510 FFSEGVSVAVQWPGIGTEQKSLCSS  534 (645)
Q Consensus       510 ~~~~g~~~~v~~s~~~~~l~~~~~~  534 (645)
                      ..+.+.+.+++|+|++..|++.+.+
T Consensus       303 ~~~~~~v~~~~~s~~~~~l~~~~~d  327 (337)
T 1gxr_A          303 SKESSSVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             EECSSCEEEEEECTTSCEEEEEETT
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCC
Confidence            2344556677777777666655443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.7e-33  Score=287.86  Aligned_cols=296  Identities=20%  Similarity=0.317  Sum_probs=236.1

Q ss_pred             chhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccc
Q 006424           94 CMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKAN  173 (645)
Q Consensus        94 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (645)
                      .|..+|+||...|+.++|+|+....+++++.            |++++.|-          +    ...           
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~------------D~~i~vWd----------~----~~~-----------   71 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASR------------DKTIIMWK----------L----TRD-----------   71 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEET------------TSCEEEEE----------E----CCS-----------
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcC------------CCeEEEEE----------C----CCC-----------
Confidence            4556899999999999999985444888888            88777770          0    000           


Q ss_pred             hhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCce
Q 006424          174 KMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK  253 (645)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (645)
                                  +.......+++++|.+.|++++|+|+|++|++|+.||.|++|+....                     
T Consensus        72 ------------~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~---------------------  118 (340)
T 4aow_A           72 ------------ETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG---------------------  118 (340)
T ss_dssp             ------------SSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------------------
T ss_pred             ------------CcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc---------------------
Confidence                        00011134568899999999999999999999999999999998862                     


Q ss_pred             EEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe--cCCCcE
Q 006424          254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYV  330 (645)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~--~~~~~v  330 (645)
                                              ........+...+..+.+++++ .|++++.|+.+++||+.........  .|...+
T Consensus       119 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v  174 (340)
T 4aow_A          119 ------------------------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV  174 (340)
T ss_dssp             ------------------------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCE
T ss_pred             ------------------------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcc
Confidence                                    3344555677888899999876 8999999999999999876554433  488899


Q ss_pred             EEEEEeeCC-CCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE
Q 006424          331 TCVQFNPID-DNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV  408 (645)
Q Consensus       331 ~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~  408 (645)
                      .+++|++.. ..++++++.|+.|++||+++++... +.+|...|++++|+|++++|++|+.||.|++||++.......  
T Consensus       175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~--  252 (340)
T 4aow_A          175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT--  252 (340)
T ss_dssp             EEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE--
T ss_pred             cceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee--
Confidence            999998732 3478899999999999999987665 677899999999999999999999999999999987764322  


Q ss_pred             eeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEe---------ecCCCCCeEEEEEecCCCEEEEE
Q 006424          409 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK---------GLPKSGSQMSASFTTTGKHIISI  479 (645)
Q Consensus       409 ~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~---------~~~~~~~i~~v~~sp~~~~l~t~  479 (645)
                       +..     ...+.++.|+|++  .+++++.|+.|++||+........         ...|...|++++|+|++++|++|
T Consensus       253 -~~~-----~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg  324 (340)
T 4aow_A          253 -LDG-----GDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG  324 (340)
T ss_dssp             -EEC-----SSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEE
T ss_pred             -ecC-----CceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence             222     2679999999986  566777899999999874332221         23478899999999999999999


Q ss_pred             eCCccEEEEeCCCC
Q 006424          480 GDDCRVYVWNYDEL  493 (645)
Q Consensus       480 s~dg~I~iwd~~~~  493 (645)
                      +.||.|+|||+.+|
T Consensus       325 s~Dg~v~iW~~~tG  338 (340)
T 4aow_A          325 YTDNLVRVWQVTIG  338 (340)
T ss_dssp             ETTSCEEEEEEEC-
T ss_pred             eCCCEEEEEeCCCc
Confidence            99999999999887

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.8e-34  Score=291.02  Aligned_cols=248  Identities=20%  Similarity=0.297  Sum_probs=198.3

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.                                        
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~----------------------------------------   46 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG----------------------------------------   46 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE----------------------------------------
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC----------------------------------------
Confidence            4567999999999999999999999999999999997631                                        


Q ss_pred             eccCCCceeeccCccCeEEEEEcCC--C-eEEEEeCCCcEEEEecCCCe--EEEEe-cCCCcEEEEEEeeCC--CCEEEE
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS  345 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~--~-~l~s~s~dg~I~iwd~~~~~--~~~~~-~~~~~v~~l~~~p~~--~~~l~s  345 (645)
                         ...+..+.+|.+.|++++|+++  + +|++|+.|++|++||+++++  ....+ .|...|.+++|+| +  +.+|++
T Consensus        47 ---~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~g~~las  122 (316)
T 3bg1_A           47 ---QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP-HDYGLILAC  122 (316)
T ss_dssp             ---EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECC-TTTCSCEEE
T ss_pred             ---cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECC-CCCCcEEEE
Confidence               1235678899999999999852  4 89999999999999998874  44444 4889999999999 5  789999


Q ss_pred             EeCCCcEEEEeCCCCcE----EEeeccCCCeEEEEEccC-----------------CCEEEEEecCCeEEEEEecCCcee
Q 006424          346 GSIDGKVRIWGVCEKRV----VDWADVRDVISAICYIPD-----------------GKGFIVGSITGTCHFYKASGNDLK  404 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~~----~~~~~~~~~v~~l~~sp~-----------------g~~l~~g~~dg~i~iwd~~~~~~~  404 (645)
                      |+.|++|++||++.+..    .....|...+.+++|+|+                 +++|++|+.|+.|++||++.....
T Consensus       123 gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~  202 (316)
T 3bg1_A          123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW  202 (316)
T ss_dssp             ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred             EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence            99999999999987632    224568889999999997                 478999999999999999754321


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCCC---CcEEEEEECCCeEEEEECCcc------eeeEeecCCCCCeEEEEEecCCCE
Q 006424          405 LEKVDFHDRKKTSGNKITGIQFSRDE---SQRIMITSEDSKLRILDGVDV------IHKFKGLPKSGSQMSASFTTTGKH  475 (645)
Q Consensus       405 ~~~~~~~~~~~~~~~~i~~i~~s~~g---~~~l~~~s~dg~I~iwd~~~~------~~~~~~~~~~~~i~~v~~sp~~~~  475 (645)
                      ....    ....|...|.+++|+|++   ..+|++++.|++|++||+...      ...+.  .|...|.+++|+|++++
T Consensus       203 ~~~~----~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~  276 (316)
T 3bg1_A          203 KEEQ----KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANI  276 (316)
T ss_dssp             EEEE----CCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCC
T ss_pred             ceee----ecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCE
Confidence            1111    123456889999999985   268999999999999997641      12233  36789999999999999


Q ss_pred             EEEEeCCccEEEEeCC
Q 006424          476 IISIGDDCRVYVWNYD  491 (645)
Q Consensus       476 l~t~s~dg~I~iwd~~  491 (645)
                      |++++.||.|++|+..
T Consensus       277 las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          277 LAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEESSSCEEEEEEC
T ss_pred             EEEEcCCCeEEEEEEC
Confidence            9999999999999975

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=293.64  Aligned_cols=350  Identities=15%  Similarity=0.195  Sum_probs=227.1

Q ss_pred             ccccccccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          191 YTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      .....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++..........                           
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------------------   86 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA---------------------------   86 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE---------------------------
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc---------------------------
Confidence            34566788999999999999 99999999999999999998743221100000                           


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeC--CCCEEEE
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI--DDNYFIS  345 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~--~~~~l~s  345 (645)
                        .   .........+|...|.+++|+| ++ +|++++.||.|++||+.+++....+.+...+.++.|+|.  ++.++++
T Consensus        87 --~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (408)
T 4a11_B           87 --V---CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV  161 (408)
T ss_dssp             --E---EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEE
T ss_pred             --c---ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEE
Confidence              0   0000112246999999999999 55 899999999999999999999999999999999999983  2339999


Q ss_pred             EeCCCcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEee---------cccc
Q 006424          346 GSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDF---------HDRK  414 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~---------~~~~  414 (645)
                      ++.|+.|++||+++++.. .+..|...|.+++|+|+++ .+++|+.||.|++||++........+..         ....
T Consensus       162 ~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (408)
T 4a11_B          162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN  241 (408)
T ss_dssp             EESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred             EcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccc
Confidence            999999999999987654 4667899999999999998 5889999999999999876543332211         1111


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeec--C---CCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL--P---KSGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~--~---~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                      ..|...|.+++|+|++ .+|++++.|+.|++||+..........  .   ....+........+..+++++.|+.|++||
T Consensus       242 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d  320 (408)
T 4a11_B          242 TAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT  320 (408)
T ss_dssp             CSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred             ccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence            3466889999999997 899999999999999987543222111  0   111222222233456677778899999999


Q ss_pred             CCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCC
Q 006424          490 YDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGP  569 (645)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~  569 (645)
                      +.++....           .+                                          ..+...+++++|+||++
T Consensus       321 ~~~~~~~~-----------~~------------------------------------------~~~~~~v~~~~~s~~~~  347 (408)
T 4a11_B          321 VYSGEQIT-----------ML------------------------------------------KGHYKTVDCCVFQSNFQ  347 (408)
T ss_dssp             TTTCCEEE-----------EE------------------------------------------CCCSSCEEEEEEETTTT
T ss_pred             CcCCccee-----------ee------------------------------------------ccCCCeEEEEEEcCCCC
Confidence            98762110           00                                          11223344556666666


Q ss_pred             CCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424          570 CRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       570 ~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                      ++++++. |+.|++||+.+++..           . ..........+.+.+...+.+++.|+.|++|.+.
T Consensus       348 ~l~s~~~-dg~i~iw~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          348 ELYSGSR-DCNILAWVPSLYEPV-----------P-DDDETTTKSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             EEEEEET-TSCEEEEEECC---------------------------------------------------
T ss_pred             EEEEECC-CCeEEEEeCCCCCcc-----------C-CCCceEeccccccccceeecccCccCceeecCCc
Confidence            6666666 889999999887311           0 0111111123444456677889999999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.8e-34  Score=303.74  Aligned_cols=305  Identities=15%  Similarity=0.202  Sum_probs=220.7

Q ss_pred             CceeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEE---ecCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424          279 PLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGKVR  353 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~  353 (645)
                      ......+|...|++|+|+|. + +|++|+.||+|+|||+.+++....   .+|...|++++|+|.++++|++|+.||+|+
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            34566789999999999985 3 899999999999999987654333   359999999999987789999999999999


Q ss_pred             EEeCCCCcEEEeec---cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          354 IWGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       354 vwd~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      +||++++....+..   +...+.+++|+|++++|++|+.||.|++||+++....        ....|...|++++|+|++
T Consensus       191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~--------~~~~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW--------NLRMHKKKVTHVALNPCC  262 (435)
T ss_dssp             EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC--------CSBCCSSCEEEEEECTTC
T ss_pred             EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE--------EEecccceEEeeeecCCC
Confidence            99998876655433   3446789999999999999999999999999764321        122356889999999998


Q ss_pred             CcEEEEEECCCeEEEEECCccee---eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCccee
Q 006424          431 SQRIMITSEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC  507 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~~~~~~---~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  507 (645)
                      ..++++++.|+.|++||++....   ......|...|.+++|+|+|++|++++.||.|+|||+.++............  
T Consensus       263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~--  340 (435)
T 4e54_B          263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR--  340 (435)
T ss_dssp             SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC--
T ss_pred             ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc--
Confidence            77899999999999999874321   2223458889999999999999999999999999999876432211000000  


Q ss_pred             eeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCc
Q 006424          508 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT  587 (645)
Q Consensus       508 ~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~  587 (645)
                        ...........|+|++..+                                .+++++|+..++.....++.|++||..
T Consensus       341 --~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~d~~~~~~~~~~~~~i~iwd~~  386 (435)
T 4e54_B          341 --HFQHLTPIKAAWHPRYNLI--------------------------------VVGRYPDPNFKSCTPYELRTIDVFDGN  386 (435)
T ss_dssp             --CCSSSCCCBCEECSSSSCE--------------------------------EEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred             --ccccceeEEEEEcCCCCEE--------------------------------EEEEcCCCCeEEEEecCCCEEEEEECC
Confidence              0000001122233333222                                234566677666655546789999998


Q ss_pred             cCCCCCcCChhhhHhhhhhccCCCCCc---cCCCCcceEEEEecCCCeEeEEEec
Q 006424          588 IDSDGYCQDPQQQRLQQQCLNNVDDVR---AISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                      ++.          .......++...+.   +|++ ||.+|++|+ |++|+||+..
T Consensus       387 ~g~----------~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          387 SGK----------MMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             SCC----------EEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC
T ss_pred             CCc----------EEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECC
Confidence            883          11222223333332   2444 799999876 8899999965

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-35  Score=308.56  Aligned_cols=336  Identities=8%  Similarity=0.116  Sum_probs=255.3

Q ss_pred             CccCeEEEEEcCCC--eEEEE----------eCCCcEEEEecCCCe---EEEEecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          286 HKGDVLDLAWSNSN--YLLSC----------SMDKTVRMWQVGCNQ---CLNVFDHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       286 h~~~V~~l~~s~~~--~l~s~----------s~dg~I~iwd~~~~~---~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                      +...|.+++|+|++  +|++|          +.|+.|++||+.++.   .+..+.|...|.+++|+| ++++|++++.||
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH-NNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECS-SSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECC-CCCeEEEEccCC
Confidence            34578899999986  78888          889999999998875   556667899999999999 999999999999


Q ss_pred             cEEEEeCCC----C-cEEEeeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCc------eeeeEEeeccccccCC
Q 006424          351 KVRIWGVCE----K-RVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGND------LKLEKVDFHDRKKTSG  418 (645)
Q Consensus       351 ~i~vwd~~~----~-~~~~~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~  418 (645)
                      .|++||+..    . ....+..|...|++++|+|+ ++++++++.||.|++||+....      ....    ......|.
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~  165 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT----PGQSMSSV  165 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC----CCCSCCSS
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc----cccccCCC
Confidence            999999987    2 45567889999999999998 8999999999999999998775      2211    11223456


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCC------CCCeEEEEEecCC-CEEEEEeCCc---cEEEE
Q 006424          419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK------SGSQMSASFTTTG-KHIISIGDDC---RVYVW  488 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~------~~~i~~v~~sp~~-~~l~t~s~dg---~I~iw  488 (645)
                      ..|.+++|+|++..++++++.|+.|++||++..........+      ...+.+++|+|++ .++++++.|+   .|++|
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW  245 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred             CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence            889999999995589999999999999998865444444333      7889999999997 6999999999   99999


Q ss_pred             eCCCCCcCCCcccCCcceeeeeecCCcEEEEecCC-CCccccccCCCCccccCccccccccCC--ccCCCCccccCcccc
Q 006424          489 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG-IGTEQKSLCSSSLRDCSQKWDNLETAP--WIRDSERFSLGSWFS  565 (645)
Q Consensus       489 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~-~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~fs  565 (645)
                      |+.++..+.....        ..+.+.+..++|+| ++..|++.+.++.   +.+|+......  .+..+...+.+++|+
T Consensus       246 d~~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~~l~s~~~dg~---v~~wd~~~~~~~~~~~~~~~~v~~~~~s  314 (416)
T 2pm9_A          246 DLRNANTPLQTLN--------QGHQKGILSLDWCHQDEHLLLSSGRDNT---VLLWNPESAEQLSQFPARGNWCFKTKFA  314 (416)
T ss_dssp             ETTSTTSCSBCCC--------SCCSSCEEEEEECSSCSSCEEEEESSSE---EEEECSSSCCEEEEEECSSSCCCCEEEC
T ss_pred             eCCCCCCCcEEee--------cCccCceeEEEeCCCCCCeEEEEeCCCC---EEEeeCCCCccceeecCCCCceEEEEEC
Confidence            9987632221110        02456788999999 8888888777643   56777644332  456778889999999


Q ss_pred             CCC-CCCcCCCCCCCcCCCCCCccCCCCCcCCh-----hhhHhhhh---------------------hccCCCCCccCCC
Q 006424          566 NDG-PCRGSATWPAEKLPLWDVTIDSDGYCQDP-----QQQRLQQQ---------------------CLNNVDDVRAISA  618 (645)
Q Consensus       566 ~dg-~~l~s~s~~d~~i~iWd~~~~~~~~~~~~-----~~~~~~~~---------------------~~~~~~~~~~~~~  618 (645)
                      |++ .++++++. |+.|++|++.+.........     ..+.....                     .+.......+|++
T Consensus       315 ~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  393 (416)
T 2pm9_A          315 PEAPDLFACASF-DNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF  393 (416)
T ss_dssp             TTCTTEEEECCS-SSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET
T ss_pred             CCCCCEEEEEec-CCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee
Confidence            999 78888888 99999999987742221100     00000000                     0111112234445


Q ss_pred             CcceEEEEecCCCeEeEEEec
Q 006424          619 TWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       619 ~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                       ||++|++|+.||+|+||++.
T Consensus       394 -dg~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          394 -GGKLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             -TTEEECBCTTSSCBCCBCCC
T ss_pred             -CCeEEEEeCCCCeEEEEEec
Confidence             79999999999999999964

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.6e-33  Score=287.32  Aligned_cols=309  Identities=15%  Similarity=0.234  Sum_probs=230.1

Q ss_pred             cccccccccCcEEEEEECCCCC-EEEEEeC---CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGR-YLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  267 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~-~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (645)
                      ..+.+++|.+.|++++|+|++. ++++|+.   ||.|++||+.++...                                
T Consensus        10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~--------------------------------   57 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK--------------------------------   57 (357)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE--------------------------------
T ss_pred             hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc--------------------------------
Confidence            3445678999999999999996 5556665   999999999873211                                


Q ss_pred             cCCCceeccCCCceeeccCccCeEEEEEcCC----CeEEEEeCCCcEEEEecCCCe-EEEEe-cCCCcEEEEEE------
Q 006424          268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNS----NYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQF------  335 (645)
Q Consensus       268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~----~~l~s~s~dg~I~iwd~~~~~-~~~~~-~~~~~v~~l~~------  335 (645)
                                  .....+|...|.+++|+|+    .+|++|+.||.|++||+.+++ .+..+ .|...|.+++|      
T Consensus        58 ------------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  125 (357)
T 3i2n_A           58 ------------LLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGI  125 (357)
T ss_dssp             ------------EEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGC
T ss_pred             ------------ceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecccccc
Confidence                        1223368999999999997    489999999999999999887 66666 48899999965      


Q ss_pred             eeCCCCEEEEEeCCCcEEEEeCCCCc--EEEeeccC----CCeEEEE----EccCCCEEEEEecCCeEEEEEecCCceee
Q 006424          336 NPIDDNYFISGSIDGKVRIWGVCEKR--VVDWADVR----DVISAIC----YIPDGKGFIVGSITGTCHFYKASGNDLKL  405 (645)
Q Consensus       336 ~p~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~----~~v~~l~----~sp~g~~l~~g~~dg~i~iwd~~~~~~~~  405 (645)
                      +| ++++|++++.|+.|++||++++.  ...+..+.    ..+.+++    |+|+++++++++.||.|++||+++.....
T Consensus       126 s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  204 (357)
T 3i2n_A          126 GE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW  204 (357)
T ss_dssp             C--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee
Confidence            57 88999999999999999998865  33444333    3788888    78899999999999999999999876522


Q ss_pred             eEEeeccccccCCCCeEEEEEcC---CCCcEEEEEECCCeEEEEECCcce--eeE---eecCCCCCeEEEEEecCCC-EE
Q 006424          406 EKVDFHDRKKTSGNKITGIQFSR---DESQRIMITSEDSKLRILDGVDVI--HKF---KGLPKSGSQMSASFTTTGK-HI  476 (645)
Q Consensus       406 ~~~~~~~~~~~~~~~i~~i~~s~---~g~~~l~~~s~dg~I~iwd~~~~~--~~~---~~~~~~~~i~~v~~sp~~~-~l  476 (645)
                      .    .    .+...|.+++|+|   ++ .++++++.||.|++||++...  ..+   ....|...|.+++|+|+++ +|
T Consensus       205 ~----~----~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  275 (357)
T 3i2n_A          205 E----T----NIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELF  275 (357)
T ss_dssp             E----E----ECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred             e----c----CCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEE
Confidence            1    1    1247899999999   76 799999999999999976322  222   2225889999999999998 89


Q ss_pred             EEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCC
Q 006424          477 ISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSE  556 (645)
Q Consensus       477 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~  556 (645)
                      ++++.||.|++||+..+......                      .+++......+.            .........+.
T Consensus       276 ~~~~~dg~i~iwd~~~~~~~~~~----------------------~~~g~~~~~~~~------------~~~~~~~~~~~  321 (357)
T 3i2n_A          276 LTAGGAGGLHLWKYEYPIQRSKK----------------------DSEGIEMGVAGS------------VSLLQNVTLST  321 (357)
T ss_dssp             EEEETTSEEEEEEEECCSCC--C----------------------CTTSCCCCCCCE------------EEEEEEEECCS
T ss_pred             EEEeCCCcEEEeecCCCcccccc----------------------cCCCCccccccc------------cceeeccccCC
Confidence            99999999999999876422111                      111111000000            00111133456


Q ss_pred             ccccCccccCCCCCCc-CCCCCCCcCCCCCCccC
Q 006424          557 RFSLGSWFSNDGPCRG-SATWPAEKLPLWDVTID  589 (645)
Q Consensus       557 ~~~~~~~fs~dg~~l~-s~s~~d~~i~iWd~~~~  589 (645)
                      ..+++++|+|+|++++ +++. |+.|++||+.+.
T Consensus       322 ~~v~~~~~s~~~~~l~~s~~~-d~~i~iw~~~~~  354 (357)
T 3i2n_A          322 QPISSLDWSPDKRGLCVCSSF-DQTVRVLIVTKL  354 (357)
T ss_dssp             SCEEEEEECSSSTTEEEEEET-TSEEEEEEECC-
T ss_pred             CCeeEEEEcCCCCeEEEEecC-CCcEEEEECCCc
Confidence            6778888999999887 6777 899999998765

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.9e-33  Score=287.64  Aligned_cols=292  Identities=10%  Similarity=0.162  Sum_probs=224.5

Q ss_pred             ccccccccccccCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424          189 ALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  267 (645)
Q Consensus       189 ~~~~~~~l~~H~~~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (645)
                      .....+.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.++                                   
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------------------------------  106 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-----------------------------------  106 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-----------------------------------
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-----------------------------------
Confidence            344566788999999999999999 89999999999999999863                                   


Q ss_pred             cCCCceeccCCCceee--ccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCC
Q 006424          268 IPDEVFQIEESPLQEL--HGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDD  340 (645)
Q Consensus       268 ~~~~~~~~~~~~~~~l--~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~  340 (645)
                                .....+  .+|...|.+++|+| ++ +|++++.|+.|++||+..........   +...|.+++|+| ++
T Consensus       107 ----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  175 (383)
T 3ei3_B          107 ----------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV-SR  175 (383)
T ss_dssp             ----------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET-TT
T ss_pred             ----------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECC-CC
Confidence                      222333  47999999999999 44 89999999999999999644433333   447899999999 99


Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424          341 NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  419 (645)
Q Consensus       341 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  419 (645)
                      ++|++|+.|+.|++||++......+..|...|.+++|+|+++ ++++++.||.|++||++.............    |..
T Consensus       176 ~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~  251 (383)
T 3ei3_B          176 QMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP----HEK  251 (383)
T ss_dssp             TEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE----CSS
T ss_pred             CEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec----CCC
Confidence            999999999999999997777777888999999999999999 999999999999999987432211111111    357


Q ss_pred             CeEEEEEcC-CCCcEEEEEECCCeEEEEECCc--ceeeEeecC-----CC----------CCeEEEEEecCCCEEEEEeC
Q 006424          420 KITGIQFSR-DESQRIMITSEDSKLRILDGVD--VIHKFKGLP-----KS----------GSQMSASFTTTGKHIISIGD  481 (645)
Q Consensus       420 ~i~~i~~s~-~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~-----~~----------~~i~~v~~sp~~~~l~t~s~  481 (645)
                      .|.+++|+| ++ .+|++++.|+.|++||++.  ....+..+.     +.          +.+..++|+|++++  +|+.
T Consensus       252 ~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~  328 (383)
T 3ei3_B          252 PVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND  328 (383)
T ss_dssp             CEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC
T ss_pred             ceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC
Confidence            899999999 87 8999999999999999874  233333321     11          34455667777766  7789


Q ss_pred             CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424          482 DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  545 (645)
Q Consensus       482 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~  545 (645)
                      ||.|++||+.+++......        ...+.+.+..++|+|++..|++.+ |   ..+.+|+.
T Consensus       329 d~~i~iwd~~~~~~~~~l~--------~~~~~~~~~~~~~s~~g~~l~s~s-d---~~i~iw~~  380 (383)
T 3ei3_B          329 KRTIDIYDANSGGLVHQLR--------DPNAAGIISLNKFSPTGDVLASGM-G---FNILIWNR  380 (383)
T ss_dssp             CCCEEEEETTTCCEEEEEC--------BTTBCSCCCEEEECTTSSEEEEEE-T---TEEEEEEC
T ss_pred             CCeEEEEecCCCceeeeec--------CCCCCceEEEEEEecCccEEEEec-C---CcEEEEec
Confidence            9999999998774311110        011345566678999999888774 3   44667765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.2e-33  Score=313.75  Aligned_cols=292  Identities=19%  Similarity=0.320  Sum_probs=231.0

Q ss_pred             hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424           95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK  174 (645)
Q Consensus        95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (645)
                      +...|.+|.+.|..+++.+++...+++.+.            |+.++.|-          +    .....          
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~------------D~~i~~W~----------~----~~~~~----------  417 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASR------------DKSIILWK----------L----TKDDK----------  417 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEET------------TSEEEEEE----------C----CCSTT----------
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeC------------CCcEEEEE----------c----cCCCc----------
Confidence            345688999999999999886555788888            77777661          0    00000          


Q ss_pred             hHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceE
Q 006424          175 MEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI  254 (645)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (645)
                                   ......+.+.+|.+.|++++|+|+|++|++|+.||+|++||+.+                       
T Consensus       418 -------------~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~-----------------------  461 (694)
T 3dm0_A          418 -------------AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA-----------------------  461 (694)
T ss_dssp             -------------CSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------
T ss_pred             -------------ccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-----------------------
Confidence                         00012345789999999999999999999999999999999987                       


Q ss_pred             EecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe----cCCCc
Q 006424          255 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNY  329 (645)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~----~~~~~  329 (645)
                                            +.....+.+|...|.+++|+|++ +|++|+.|++|++||..........    .|...
T Consensus       462 ----------------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~  519 (694)
T 3dm0_A          462 ----------------------GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW  519 (694)
T ss_dssp             ----------------------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred             ----------------------CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence                                  34467788999999999999987 8999999999999998765444332    37889


Q ss_pred             EEEEEEeeCCC--CEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424          330 VTCVQFNPIDD--NYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  406 (645)
Q Consensus       330 v~~l~~~p~~~--~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~  406 (645)
                      |.+++|+| ++  ..+++++.|++|++||++++++.. +.+|...|++++|+|++++|++|+.||.|++||+.+......
T Consensus       520 v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~  598 (694)
T 3dm0_A          520 VSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS  598 (694)
T ss_dssp             EEEEEECS-CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC
T ss_pred             EEEEEEeC-CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            99999999 55  589999999999999999887654 678999999999999999999999999999999987764321


Q ss_pred             EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeec-------------------CCCCCeEEE
Q 006424          407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL-------------------PKSGSQMSA  467 (645)
Q Consensus       407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~-------------------~~~~~i~~v  467 (645)
                         +.     +...+.+++|+|++ .+++++ .++.|++||+..........                   .+...++++
T Consensus       599 ---~~-----~~~~v~~~~~sp~~-~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  668 (694)
T 3dm0_A          599 ---LE-----ANSVIHALCFSPNR-YWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSL  668 (694)
T ss_dssp             ---CB-----CSSCEEEEEECSSS-SEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEE
T ss_pred             ---ec-----CCCcEEEEEEcCCC-cEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeE
Confidence               12     13679999999997 555555 56679999987543222111                   111247899


Q ss_pred             EEecCCCEEEEEeCCccEEEEeCC
Q 006424          468 SFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       468 ~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      +|+|+|++|++|+.||+|+||++.
T Consensus       669 ~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          669 NWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEcCCCCEEEEEcCCCeEEEEecc
Confidence            999999999999999999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=307.22  Aligned_cols=325  Identities=10%  Similarity=0.085  Sum_probs=232.8

Q ss_pred             CCCceee-ccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCC---Ce---EEEEecCCCcEEEEEEeeCCCCEEEEEe
Q 006424          277 ESPLQEL-HGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGC---NQ---CLNVFDHHNYVTCVQFNPIDDNYFISGS  347 (645)
Q Consensus       277 ~~~~~~l-~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~---~~---~~~~~~~~~~v~~l~~~p~~~~~l~s~s  347 (645)
                      ++.+..+ .+|.+.|++++|+| ++ +|++|+.||+|++||+.+   +.   ....+.|...|.+++|+| ++++|++|+
T Consensus        52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s  130 (437)
T 3gre_A           52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAFAVSS  130 (437)
T ss_dssp             CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT-TSSEEEEEE
T ss_pred             ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC-CCCEEEEEe
Confidence            4556777 88999999999999 77 999999999999999876   33   345557999999999999 999999999


Q ss_pred             CCCcEEEEeCC---CCcEEEee-----------c--cCCCeEEEE--EccCCCEEEEEecCCeEEEEEecCCceeeeEEe
Q 006424          348 IDGKVRIWGVC---EKRVVDWA-----------D--VRDVISAIC--YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD  409 (645)
Q Consensus       348 ~dg~i~vwd~~---~~~~~~~~-----------~--~~~~v~~l~--~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~  409 (645)
                      .||.|++||+.   .++.....           .  +...+.++.  +++++.++++|+.||.|++||+++...... +.
T Consensus       131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~  209 (437)
T 3gre_A          131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI-IE  209 (437)
T ss_dssp             TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE-EE
T ss_pred             CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE-Ec
Confidence            99999999994   44333211           1  455677776  567899999999999999999988765332 22


Q ss_pred             eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEee-cCCCCCeEEEEEe----cCCCEEEEEeCCcc
Q 006424          410 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFT----TTGKHIISIGDDCR  484 (645)
Q Consensus       410 ~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~i~~v~~s----p~~~~l~t~s~dg~  484 (645)
                      ..    .|...|++++|+|++ .+|++++.||.|++||++........ ..+...|.+++|+    |++.+|++|+.||.
T Consensus       210 ~~----~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~  284 (437)
T 3gre_A          210 NS----PRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF  284 (437)
T ss_dssp             CC----GGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred             cC----CCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence            21    134789999999997 89999999999999998865443333 2467789999665    56889999999999


Q ss_pred             EEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccc
Q 006424          485 VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWF  564 (645)
Q Consensus       485 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~f  564 (645)
                      |++||+.++.....          ...+.+.+..+.|+|++..+....-             .    -..+...+++++|
T Consensus       285 i~iwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~-------------~----~~~~~~~v~~l~~  337 (437)
T 3gre_A          285 LTIWNFVKGHCQYA----------FINSDEQPSMEHFLPIEKGLEELNF-------------C----GIRSLNALSTISV  337 (437)
T ss_dssp             EEEEETTTTEEEEE----------EESSSSCCCGGGGSCBCSSGGGCCC-------------C----CCCSGGGGCCEEE
T ss_pred             EEEEEcCCCcEEEE----------EEcCCCCCccceeccccccccccee-------------c----ccccCCceEEEEE
Confidence            99999987632111          1123344555667777766521110             0    0226678899999


Q ss_pred             cCCCCCCcCCCCCCCcCCCCCCccCCCCCc-CC-------------------------hhhhHhhhhhccCCCCC--ccC
Q 006424          565 SNDGPCRGSATWPAEKLPLWDVTIDSDGYC-QD-------------------------PQQQRLQQQCLNNVDDV--RAI  616 (645)
Q Consensus       565 s~dg~~l~s~s~~d~~i~iWd~~~~~~~~~-~~-------------------------~~~~~~~~~~~~~~~~~--~~~  616 (645)
                      + +++++++++. |+.|++||+.+++.... ..                         ............|...+  +++
T Consensus       338 ~-~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~  415 (437)
T 3gre_A          338 S-NDKILLTDEA-TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSIST  415 (437)
T ss_dssp             E-TTEEEEEEGG-GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEE
T ss_pred             C-CceEEEecCC-CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEee
Confidence            9 8899999988 99999999987731100 00                         00000000011123322  334


Q ss_pred             CCC-cceEEEEecCCCeEeEEE
Q 006424          617 SAT-WGLVIVTAGCDGMIKTFH  637 (645)
Q Consensus       617 ~~~-d~~~ivt~s~Dg~Iriw~  637 (645)
                      .+. ++.+|+||+.||+|+||+
T Consensus       416 ~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          416 CEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EESSSSEEEEEEETTSCEEEEC
T ss_pred             eccCCceEEEEEcCCceEEEeC
Confidence            443 478999999999999995

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-32  Score=274.97  Aligned_cols=246  Identities=17%  Similarity=0.230  Sum_probs=205.7

Q ss_pred             ccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424          187 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  266 (645)
Q Consensus       187 ~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (645)
                      +......+++.+|.+.|++++| |++++|++|+.||.|++||+.+                                   
T Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~-----------------------------------   48 (313)
T 3odt_A            5 FTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD-----------------------------------   48 (313)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS-----------------------------------
T ss_pred             cccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC-----------------------------------
Confidence            3455677889999999999999 9999999999999999999976                                   


Q ss_pred             ecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC---eEEEEe-cCCCcEEEEEEeeCCCC
Q 006424          267 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVF-DHHNYVTCVQFNPIDDN  341 (645)
Q Consensus       267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~---~~~~~~-~~~~~v~~l~~~p~~~~  341 (645)
                                ......+..|...|.+++|+|++ ++++++.||.|++|++...   +.+..+ .|...|.+++|   +++
T Consensus        49 ----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~  115 (313)
T 3odt_A           49 ----------QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF---QDG  115 (313)
T ss_dssp             ----------SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE---ETT
T ss_pred             ----------CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe---cCC
Confidence                      34456677899999999999987 8999999999999998654   444444 48899999999   467


Q ss_pred             EEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          342 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      ++++++.|+.|++|| .......+..|...+.+++|+| +++++++++.||.|++||...   .......     .+...
T Consensus       116 ~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~-----~~~~~  186 (313)
T 3odt_A          116 VVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK---VIKTFSG-----IHNDV  186 (313)
T ss_dssp             EEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE---EEEEECS-----SCSSC
T ss_pred             EEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc---eEEEEec-----cCccc
Confidence            999999999999999 4445556778999999999999 999999999999999999321   1111111     13578


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +.+++|+|++ . +++++.|+.|++||++..........|...|.+++|+|++ .|++++.||.|++||+.++
T Consensus       187 i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          187 VRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             EEEEEEEETT-E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred             EEEEEEcCCC-e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence            9999999997 4 9999999999999988655555555588999999999999 6899999999999999876

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.8e-33  Score=289.02  Aligned_cols=252  Identities=14%  Similarity=0.202  Sum_probs=204.3

Q ss_pred             ccccccCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          195 EIQAHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspd----g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      ...+|.+.|++++|+|+    ...+++++.++.|++||+.++..                                    
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~------------------------------------   56 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE------------------------------------   56 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC------------------------------------
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE------------------------------------
Confidence            34589999999999984    44677777777999999986322                                    


Q ss_pred             CceeccCCCceeec-----cCccCeEEEEEcCC----C-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCC
Q 006424          271 EVFQIEESPLQELH-----GHKGDVLDLAWSNS----N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPID  339 (645)
Q Consensus       271 ~~~~~~~~~~~~l~-----~h~~~V~~l~~s~~----~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~  339 (645)
                               +..+.     .|...|++++|+|+    + +|++|+.||.|++||+.+++.+..+. |...|.+++|+|.+
T Consensus        57 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  127 (366)
T 3k26_A           57 ---------IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRD  127 (366)
T ss_dssp             ---------EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSC
T ss_pred             ---------EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCC
Confidence                     22222     36788999999987    4 79999999999999999999988886 99999999999977


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcEEEe----eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEe------
Q 006424          340 DNYFISGSIDGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD------  409 (645)
Q Consensus       340 ~~~l~s~s~dg~i~vwd~~~~~~~~~----~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~------  409 (645)
                      +++|++++.||.|++||+++++....    ..|...|.+++|+|++++|++++.||.|++||+++.........      
T Consensus       128 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  207 (366)
T 3k26_A          128 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP  207 (366)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCG
T ss_pred             CCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecC
Confidence            89999999999999999999887765    47899999999999999999999999999999986543211000      


Q ss_pred             ---------------eccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee--------------eEeecCC
Q 006424          410 ---------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--------------KFKGLPK  460 (645)
Q Consensus       410 ---------------~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~--------------~~~~~~~  460 (645)
                                     .......|...|.+++|+  + .++++++.|+.|++||......              ......|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (366)
T 3k26_A          208 NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS  284 (366)
T ss_dssp             GGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS
T ss_pred             CCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc
Confidence                           000111256889999998  3 5999999999999999764321              2333447


Q ss_pred             CCCeEEEEEecC--CCEEEEEeCCccEEEEeCCCCC
Q 006424          461 SGSQMSASFTTT--GKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       461 ~~~i~~v~~sp~--~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      ...|.+++|+|+  +++|++|+.||.|++||+.+++
T Consensus       285 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          285 QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence            788999999999  9999999999999999998763

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=298.90  Aligned_cols=329  Identities=13%  Similarity=0.128  Sum_probs=234.7

Q ss_pred             cccccc-ccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          191 YTSQEI-QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       191 ~~~~~l-~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      ....++ .+|.+.|++++|+| ++++|++|+.||+|++||+.+.....                                
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~--------------------------------  100 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE--------------------------------  100 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC--------------------------------
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc--------------------------------
Confidence            355566 89999999999999 99999999999999999987511000                                


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC---CCeEEEEec-------------CCCcEE
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---CNQCLNVFD-------------HHNYVT  331 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~---~~~~~~~~~-------------~~~~v~  331 (645)
                             .......+ +|...|.+++|+|++ +|++|+.||+|++||++   +++....+.             +...+.
T Consensus       101 -------~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  172 (437)
T 3gre_A          101 -------VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV  172 (437)
T ss_dssp             -------CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE
T ss_pred             -------ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce
Confidence                   01112233 599999999999986 89999999999999995   444433221             455677


Q ss_pred             EEE--EeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eec--cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424          332 CVQ--FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  406 (645)
Q Consensus       332 ~l~--~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~--~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~  406 (645)
                      ++.  ++| +++++++|+.|+.|++||+++++... +..  |...|++++|+|++++|++|+.||.|++||++..... .
T Consensus       173 ~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~  250 (437)
T 3gre_A          173 RMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI-R  250 (437)
T ss_dssp             EEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE-E
T ss_pred             EEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE-E
Confidence            776  446 78899999999999999999987765 444  7899999999999999999999999999999975542 2


Q ss_pred             EEeeccccccCCCCeEEEEEcC----CCCcEEEEEECCCeEEEEECCcce--eeEeec----------------------
Q 006424          407 KVDFHDRKKTSGNKITGIQFSR----DESQRIMITSEDSKLRILDGVDVI--HKFKGL----------------------  458 (645)
Q Consensus       407 ~~~~~~~~~~~~~~i~~i~~s~----~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~----------------------  458 (645)
                      .+...     +...|.+++|+|    ++ .++++++.|+.|++||+....  ..+..+                      
T Consensus       251 ~~~~~-----~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  324 (437)
T 3gre_A          251 SWSFG-----DHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC  324 (437)
T ss_dssp             EEBCT-----TCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred             EEecC-----CCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence            22212     236899996665    55 799999999999999987433  333321                      


Q ss_pred             --CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCc
Q 006424          459 --PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL  536 (645)
Q Consensus       459 --~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~  536 (645)
                        .|...|.+++|+ ++++|++|+.||.|++||+.+++........       -..........+++....+...... .
T Consensus       325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~  395 (437)
T 3gre_A          325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP-------SRFSDVFIPTQVTANLTMLLRKMKR-T  395 (437)
T ss_dssp             CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC---------CCCEEEEEEEETTEEEEEEECC---
T ss_pred             ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc-------cccCceEEEEEeecceEEEEEeccc-c
Confidence              155678999999 7899999999999999999987432211100       0012223344444544444322000 0


Q ss_pred             cccCccccccccCCccCCCCccccCccccCC--CCCCcCCCCCCCcCCCCC
Q 006424          537 RDCSQKWDNLETAPWIRDSERFSLGSWFSND--GPCRGSATWPAEKLPLWD  585 (645)
Q Consensus       537 ~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~d--g~~l~s~s~~d~~i~iWd  585 (645)
                            +  .........|...+++++|+++  +.++++++. ||.|++|+
T Consensus       396 ------~--~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~-dG~I~iw~  437 (437)
T 3gre_A          396 ------S--THSVDDSLYHHDIINSISTCEVDETPLLVACDN-SGLIGIFQ  437 (437)
T ss_dssp             -------------------CCCEEEEEEEESSSSEEEEEEET-TSCEEEEC
T ss_pred             ------c--ccccCcccccccceeeEeeeccCCceEEEEEcC-CceEEEeC
Confidence                  0  0111223457788999999998  779999998 99999995

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-33  Score=294.26  Aligned_cols=300  Identities=15%  Similarity=0.224  Sum_probs=232.8

Q ss_pred             ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      .+|.+.|++++|+|++++|++|+.||.|++||..                                              
T Consensus       105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~----------------------------------------------  138 (425)
T 1r5m_A          105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT----------------------------------------------  138 (425)
T ss_dssp             ---CBCEEEEEECTTSSEEEEEETTSCEEEEETT----------------------------------------------
T ss_pred             cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC----------------------------------------------
Confidence            4578899999999999999999999999999932                                              


Q ss_pred             CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCc---------------EEEEEEeeCC
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY---------------VTCVQFNPID  339 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~---------------v~~l~~~p~~  339 (645)
                      +..+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+. +...               +.+++|+| +
T Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  217 (425)
T 1r5m_A          139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D  217 (425)
T ss_dssp             SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE-T
T ss_pred             CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C
Confidence            44567788899999999999987 89999999999999999999888875 3334               89999998 5


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424          340 DNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  418 (645)
Q Consensus       340 ~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  418 (645)
                       ..+++++.|+.|++||+++++.. .+..|...|.+++|+|++++|++++.||.|++||++....... +  .    .|.
T Consensus       218 -~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~--~----~~~  289 (425)
T 1r5m_A          218 -DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC-F--Y----GHS  289 (425)
T ss_dssp             -TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE-E--C----CCS
T ss_pred             -CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE-e--c----CCC
Confidence             56889999999999999987654 4567899999999999999999999999999999987654322 1  1    235


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCC
Q 006424          419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS  498 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~  498 (645)
                      ..+.+++|+|++  ++++++.|+.|++||+...........|...+.+++|+|++++|++++.||.|++||+.++.....
T Consensus       290 ~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~  367 (425)
T 1r5m_A          290 QSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR  367 (425)
T ss_dssp             SCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---
T ss_pred             ccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcccee
Confidence            789999999996  999999999999999886655555555888999999999999999999999999999986532111


Q ss_pred             cccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCc--cccCccccCCCCCCcCCCC
Q 006424          499 KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSER--FSLGSWFSNDGPCRGSATW  576 (645)
Q Consensus       499 ~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~~~~~~fs~dg~~l~s~s~  576 (645)
                      ...        -..++..     .+.                    .......+..+..  .+++++|+||++++++++.
T Consensus       368 ~~~--------~~~~~~~-----~~~--------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  414 (425)
T 1r5m_A          368 SLY--------GNRDGIL-----NPL--------------------PIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS  414 (425)
T ss_dssp             ------------------------CE--------------------ECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred             eee--------ccccccc-----Ccc--------------------cchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence            100        0000000     000                    0000111233333  6778888888888888877


Q ss_pred             CCCcCCCCCCc
Q 006424          577 PAEKLPLWDVT  587 (645)
Q Consensus       577 ~d~~i~iWd~~  587 (645)
                       ++.|++|+++
T Consensus       415 -dg~i~iw~~~  424 (425)
T 1r5m_A          415 -LQEGSVVAIP  424 (425)
T ss_dssp             -SSCCEEEECC
T ss_pred             -CceEEEEeec
Confidence             8899999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.9e-32  Score=285.40  Aligned_cols=304  Identities=13%  Similarity=0.147  Sum_probs=224.6

Q ss_pred             CCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKV  352 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~s~s~dg~i  352 (645)
                      .....+.+|...|++++|+|++  +|++|+.||.|++||+.+++....+   +|...|.+++|+|.++++|++++.|+.|
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            3456788999999999999986  8999999999999999988777665   4899999999999556899999999999


Q ss_pred             EEEeCCCCcEEEeecc---CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          353 RIWGVCEKRVVDWADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       353 ~vwd~~~~~~~~~~~~---~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      ++||+++.....+..+   ...|.+++|+|+++++++|+.||.|++||++...  ...+.      .|...|.+++|+|+
T Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~------~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHE--IFKEK------LHKAKVTHAEFNPR  215 (383)
T ss_dssp             EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCE--EEEEE------CSSSCEEEEEECSS
T ss_pred             EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCE--EEEec------cCCCcEEEEEECCC
Confidence            9999998766665444   4789999999999999999999999999995332  22222      23578999999999


Q ss_pred             CCcEEEEEECCCeEEEEECCcc---eeeEeecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcc
Q 006424          430 ESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR  505 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~  505 (645)
                      +..++++++.|+.|++||++..   ........|...|.+++|+| ++++|++++.||.|++||+.++........... 
T Consensus       216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-  294 (383)
T 3ei3_B          216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH-  294 (383)
T ss_dssp             CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB-
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc-
Confidence            8449999999999999998741   11222224889999999999 999999999999999999987743221110000 


Q ss_pred             eeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCC
Q 006424          506 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD  585 (645)
Q Consensus       506 ~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd  585 (645)
                        ..+.+...+ .+.|+|++.                                ...++|+|||++  +++. |+.|++||
T Consensus       295 --~~~~~~~~~-~~~~~p~~~--------------------------------~~~~~~s~dg~~--s~s~-d~~i~iwd  336 (383)
T 3ei3_B          295 --RQFQHLTPI-KATWHPMYD--------------------------------LIVAGRYPDDQL--LLND-KRTIDIYD  336 (383)
T ss_dssp             --CCCTTSCCC-CCEECSSSS--------------------------------EEEEECBCCTTT--CTTC-CCCEEEEE
T ss_pred             --cccccccce-EEeccCCCC--------------------------------ceEEEecCCccc--ccCC-CCeEEEEe
Confidence              000011111 123333322                                233567788887  6666 89999999


Q ss_pred             CccCCCCCcCChhhhHhhhh-hccCCCCC--ccCCCCcceEEEEecCCCeEeEEEecC
Q 006424          586 VTIDSDGYCQDPQQQRLQQQ-CLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYG  640 (645)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~d~~~ivt~s~Dg~Iriw~~~g  640 (645)
                      +.+++          ..... .+.+....  ++|++ ||.+|++|+ ||+|++|++..
T Consensus       337 ~~~~~----------~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          337 ANSGG----------LVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TTTCC----------EEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred             cCCCc----------eeeeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence            98873          11111 11122222  24555 799999997 99999999753

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.7e-32  Score=280.66  Aligned_cols=294  Identities=17%  Similarity=0.269  Sum_probs=232.5

Q ss_pred             ccccccccccccCcEEEEEECCC---CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424          189 ALYTSQEIQAHKGCIWTLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  265 (645)
Q Consensus       189 ~~~~~~~l~~H~~~V~~l~fspd---g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (645)
                      +....+.+++|.+.|++++|+|+   |++|++|+.||.|++||+.+..                                
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--------------------------------   75 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--------------------------------   75 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--------------------------------
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--------------------------------
Confidence            34456678999999999999999   6999999999999999998621                                


Q ss_pred             eecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEE--eeCCCCE
Q 006424          266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF--NPIDDNY  342 (645)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~--~p~~~~~  342 (645)
                                 ......+.+|...|.+++|+|++ +|++++.||.|++||+++++.+....|...|.+++|  +| ++++
T Consensus        76 -----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~  143 (368)
T 3mmy_A           76 -----------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP-NYSC  143 (368)
T ss_dssp             -----------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECS-SCEE
T ss_pred             -----------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCC-CCCE
Confidence                       11226677899999999999987 899999999999999999999998889999999999  77 8889


Q ss_pred             EEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424          343 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       343 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      |++++.||.|++||+++++..........+.++.+.  +..+++++.++.+.+|+++............     ....+.
T Consensus       144 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~  216 (368)
T 3mmy_A          144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESP-----LKHQHR  216 (368)
T ss_dssp             EEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCS-----CSSCEE
T ss_pred             EEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhcccc-----ccCCCc
Confidence            999999999999999998876666666667776665  4588999999999999998766543322211     224556


Q ss_pred             EEEEcCCCC---cEEEEEECCCeEEEEECCcc-----eeeEeecCCCC------------CeEEEEEecCCCEEEEEeCC
Q 006424          423 GIQFSRDES---QRIMITSEDSKLRILDGVDV-----IHKFKGLPKSG------------SQMSASFTTTGKHIISIGDD  482 (645)
Q Consensus       423 ~i~~s~~g~---~~l~~~s~dg~I~iwd~~~~-----~~~~~~~~~~~------------~i~~v~~sp~~~~l~t~s~d  482 (645)
                      ++.+.++..   ..+++++.|+.|++||+...     ...+..  |..            .|.+++|+|++++|++|+.|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d  294 (368)
T 3mmy_A          217 CVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD  294 (368)
T ss_dssp             EEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETT
T ss_pred             eEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEEccC
Confidence            666655431   23999999999999998743     223333  333            79999999999999999999


Q ss_pred             ccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424          483 CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  545 (645)
Q Consensus       483 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~  545 (645)
                      |.|++||+.++.....          ...+.+.+..++|+|++..|++.+.+.......+|+.
T Consensus       295 g~i~iwd~~~~~~~~~----------~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          295 GRFSFWDKDARTKLKT----------SEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             SCEEEEETTTTEEEEE----------CCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred             CeEEEEECCCCcEEEE----------ecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence            9999999987632111          1124677899999999999998888765555555543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-32  Score=280.24  Aligned_cols=306  Identities=16%  Similarity=0.187  Sum_probs=236.7

Q ss_pred             ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424          280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  357 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~  357 (645)
                      ...+.+|.+.|++++|+|++ +|++++.||.|++||+.+++.+..+. |...|.+++|+| ++++|++++.||.|++||+
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEET
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Confidence            45688999999999999997 89999999999999999999988886 899999999999 9999999999999999999


Q ss_pred             CCCcEEEeeccCCCeEEEEEccCCCEEEEEecC-----CeEEEEEecCCceeeeEEeecc----ccccCC--CCeEEEEE
Q 006424          358 CEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHD----RKKTSG--NKITGIQF  426 (645)
Q Consensus       358 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~----~~~~~~--~~i~~i~~  426 (645)
                      .+++......+...+.+++|+|+++++++++.+     |.|++||+..............    ....+.  ..+.+++|
T Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            999988877799999999999999999999999     9999999986653222111110    011122  38999999


Q ss_pred             cCCCCcEEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcc
Q 006424          427 SRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR  505 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~  505 (645)
                      +|++ .++++++.||.|++||+.. .........|...|.+++|+|++++|++++.||.|++||+.++...         
T Consensus       184 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---------  253 (369)
T 3zwl_B          184 STKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL---------  253 (369)
T ss_dssp             CGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---------
T ss_pred             cCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee---------
Confidence            9997 7999999999999999886 4444444558889999999999999999999999999999876321         


Q ss_pred             eeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCC
Q 006424          506 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD  585 (645)
Q Consensus       506 ~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd  585 (645)
                        ..+.....+..++|+|++..++..+.+.....   |..                           ........+++||
T Consensus       254 --~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~---------------------------~~~~~~~~i~~~d  301 (369)
T 3zwl_B          254 --KKYETDCPLNTAVITPLKEFIILGGGQEAKDV---TTT---------------------------SANEGKFEARFYH  301 (369)
T ss_dssp             --EEEECSSCEEEEEECSSSSEEEEEECCC-------------------------------------------CEEEEEE
T ss_pred             --eeecCCCCceeEEecCCCceEEEeecCCCceE---EEE---------------------------ecCCCcceeEEEe
Confidence              12335667888999999998887665432211   000                           0000133688999


Q ss_pred             CccCCCCCcCChhhhHhhhhhccCCCCC--ccCCCCcceEEEEecCCCeEeEEEecC
Q 006424          586 VTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYG  640 (645)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~ivt~s~Dg~Iriw~~~g  640 (645)
                      ..++.           .......+...+  +.+++ |+.+|+||+.||+|++|++..
T Consensus       302 ~~~~~-----------~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          302 KIFEE-----------EIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             TTTCC-----------EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEECH
T ss_pred             cCCCc-----------chhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECcc
Confidence            88772           122222333333  45555 799999999999999999753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.8e-32  Score=277.90  Aligned_cols=255  Identities=18%  Similarity=0.281  Sum_probs=209.9

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ..+.+.+|.+.|++++|+|++++|++|+.||.|++||+.++...                                    
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------------------------------------   46 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN------------------------------------   46 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC------------------------------------
T ss_pred             ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc------------------------------------
Confidence            34567899999999999999999999999999999999863210                                    


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcC--CC-eEEEEeCCCcEEEEecCCC---------eEEEEe-cCCCcEEEEEEeeC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCN---------QCLNVF-DHHNYVTCVQFNPI  338 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~--~~-~l~s~s~dg~I~iwd~~~~---------~~~~~~-~~~~~v~~l~~~p~  338 (645)
                           ......+.+|...|.+++|+|  ++ +|++|+.||.|++||++++         +.+..+ .|...|.+++|+| 
T Consensus        47 -----~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  120 (351)
T 3f3f_A           47 -----WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-  120 (351)
T ss_dssp             -----EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-
T ss_pred             -----ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-
Confidence                 123567789999999999998  34 9999999999999999876         445555 4889999999999 


Q ss_pred             C--CCEEEEEeCCCcEEEEeCCCCcEEE--------------eeccCCCeEEEEEccC---CCEEEEEecCCeEEEEEec
Q 006424          339 D--DNYFISGSIDGKVRIWGVCEKRVVD--------------WADVRDVISAICYIPD---GKGFIVGSITGTCHFYKAS  399 (645)
Q Consensus       339 ~--~~~l~s~s~dg~i~vwd~~~~~~~~--------------~~~~~~~v~~l~~sp~---g~~l~~g~~dg~i~iwd~~  399 (645)
                      +  ++++++++.||.|++||+++++...              ...+...+.+++|+|+   +..+++++.++.+.+|+..
T Consensus       121 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~  200 (351)
T 3f3f_A          121 AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK  200 (351)
T ss_dssp             GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT
T ss_pred             CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC
Confidence            7  8999999999999999998765321              1256778999999997   8999999999999888776


Q ss_pred             CCceeeeEEeeccccccCCCCeEEEEEcCCCC---cEEEEEECCCeEEEEECCcc-------------------------
Q 006424          400 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDES---QRIMITSEDSKLRILDGVDV-------------------------  451 (645)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~---~~l~~~s~dg~I~iwd~~~~-------------------------  451 (645)
                      ....... ..+    ..|...|++++|+|++.   .+|++++.||.|++||++..                         
T Consensus       201 ~~~~~~~-~~~----~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (351)
T 3f3f_A          201 DGKLHVA-AKL----PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMD  275 (351)
T ss_dssp             TSCEEEE-EEC----CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------
T ss_pred             CCceeee-eec----CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccc
Confidence            6553221 112    23468999999999963   69999999999999997642                         


Q ss_pred             ---------------------eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          452 ---------------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       452 ---------------------~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                                           ........|...|++++|+|++++|++|+.||.|++||+.++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          276 AQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             ---------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             cccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence                                 222333458889999999999999999999999999999876

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.3e-32  Score=288.35  Aligned_cols=286  Identities=13%  Similarity=0.128  Sum_probs=224.6

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      +.+..| ..+....|+|++++|++|+.||.|++||+.+                                          
T Consensus        92 ~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------------------------------------  128 (420)
T 3vl1_A           92 KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF------------------------------------------  128 (420)
T ss_dssp             TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS------------------------------------------
T ss_pred             eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC------------------------------------------
Confidence            344455 4556668899999999999999999999876                                          


Q ss_pred             eccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                         ......+.+|...|++++|+|++ +|++|+.|++|++||+.+++.+..+. |...|.+++|+| ++++|++++.|+.
T Consensus       129 ---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~  204 (420)
T 3vl1_A          129 ---NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGT  204 (420)
T ss_dssp             ---CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSC
T ss_pred             ---cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCc
Confidence               33455667899999999999987 89999999999999999998888775 899999999999 9999999999999


Q ss_pred             EEEEeCCCCcEEEeec----cC---------------------CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424          352 VRIWGVCEKRVVDWAD----VR---------------------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  406 (645)
Q Consensus       352 i~vwd~~~~~~~~~~~----~~---------------------~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~  406 (645)
                      |++||+++++......    +.                     ..+.+++|+|+++++++|+.||.|++||+++......
T Consensus       205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  284 (420)
T 3vl1_A          205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ  284 (420)
T ss_dssp             EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE
Confidence            9999999887765432    33                     3444455678999999999999999999988765433


Q ss_pred             EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc---eeeEeecCCCCCeEEEEEecCCCEEEEEeCCc
Q 006424          407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  483 (645)
Q Consensus       407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg  483 (645)
                      ..      ..|...|.+++|+|++..++++++.||.|++||++..   ...+..+ +...+.++.+ +++++|++++.||
T Consensus       285 ~~------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~l~s~~~d~  356 (420)
T 3vl1_A          285 LP------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNVYF-AAGALFVSSGFDT  356 (420)
T ss_dssp             EC------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEEEE-ETTEEEEEETTTE
T ss_pred             cc------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEEEe-CCCCEEEEecCCc
Confidence            21      1235789999999998449999999999999998753   3444443 6677888855 6789999999999


Q ss_pred             cEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc---cccccCCCC
Q 006424          484 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT---EQKSLCSSS  535 (645)
Q Consensus       484 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~---~l~~~~~~~  535 (645)
                      .|++|++.....+........ ......+.+.+..++|+|++.   .++..+.++
T Consensus       357 ~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g  410 (420)
T 3vl1_A          357 SIKLDIISDPESERPAIEFET-PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN  410 (420)
T ss_dssp             EEEEEEECCTTCCSCEECTTS-CEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred             cEEEEeccCCCCCccceeccC-ccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence            999999987543322211111 112345667788999999999   566665554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=291.99  Aligned_cols=300  Identities=14%  Similarity=0.222  Sum_probs=219.6

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .|.+.|++++|+|+|++||+|+.||.|+|||+.++.......                                  ..+.
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~----------------------------------~~~~   71 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS----------------------------------RGEY   71 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC----------------------------------CCCE
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc----------------------------------ccce
Confidence            478899999999999999999999999999998743110000                                  0001


Q ss_pred             CCceeeccCc------------cCeEEEEEcCCC---eEEEEeCCCcEEEEecCCCeEE---------------------
Q 006424          278 SPLQELHGHK------------GDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCL---------------------  321 (645)
Q Consensus       278 ~~~~~l~~h~------------~~V~~l~~s~~~---~l~s~s~dg~I~iwd~~~~~~~---------------------  321 (645)
                      .....+.+|.            ..|.+++|+|++   .|++++.|++|++||+.++...                     
T Consensus        72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  151 (447)
T 3dw8_B           72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT  151 (447)
T ss_dssp             EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred             eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence            2356777888            889999999974   7999999999999999765432                     


Q ss_pred             ------------------EE--ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CcEEE--------eeccCCCe
Q 006424          322 ------------------NV--FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVD--------WADVRDVI  372 (645)
Q Consensus       322 ------------------~~--~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~~--------~~~~~~~v  372 (645)
                                        ..  ..|...|.+++|+| ++++|++| .|+.|++||++. +....        +..|...|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  229 (447)
T 3dw8_B          152 LRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVI  229 (447)
T ss_dssp             CCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCE
T ss_pred             eEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcce
Confidence                              12  25889999999999 99999998 799999999984 44443        45788999


Q ss_pred             EEEEEccCC-CEEEEEecCCeEEEEEecCCcee---eeEEeeccc------cccCCCCeEEEEEcCCCCcEEEEEECCCe
Q 006424          373 SAICYIPDG-KGFIVGSITGTCHFYKASGNDLK---LEKVDFHDR------KKTSGNKITGIQFSRDESQRIMITSEDSK  442 (645)
Q Consensus       373 ~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~---~~~~~~~~~------~~~~~~~i~~i~~s~~g~~~l~~~s~dg~  442 (645)
                      ++++|+|++ ++|++|+.||.|++||+++....   ...+..+..      ...|...|.+++|+|+| .+|++++. +.
T Consensus       230 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~  307 (447)
T 3dw8_B          230 TAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LS  307 (447)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SE
T ss_pred             EEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-Ce
Confidence            999999998 99999999999999999887641   111111110      00112389999999998 89999998 99


Q ss_pred             EEEEECCc---ceeeEeecCCCC-------------CeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC----
Q 006424          443 LRILDGVD---VIHKFKGLPKSG-------------SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN----  502 (645)
Q Consensus       443 I~iwd~~~---~~~~~~~~~~~~-------------~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~----  502 (645)
                      |++||++.   ....+..+....             .+..++|+|++++|++|+.||.|++||+.+++........    
T Consensus       308 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~  387 (447)
T 3dw8_B          308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNK  387 (447)
T ss_dssp             EEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCC
T ss_pred             EEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccc
Confidence            99999864   344444421111             1334999999999999999999999999887532110000    


Q ss_pred             ------------------CcceeeeeecCCcEEEEecCCCCccccccCCCC
Q 006424          503 ------------------SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS  535 (645)
Q Consensus       503 ------------------~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~  535 (645)
                                        .............++.++|+|++..|+..+.+.
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          388 PRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             TTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred             cccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence                              000000112345678899999999999777764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=312.16  Aligned_cols=254  Identities=20%  Similarity=0.298  Sum_probs=210.3

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      ...+.+|.+.|++++|+|+|++|++|+.||.|++||+.+..                                       
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---------------------------------------   42 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------------------------   42 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------------------------------
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------------------------------
Confidence            35688999999999999999999999999999999987421                                       


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCC--C-eEEEEeCCCcEEEEecCCCe--EEEEe-cCCCcEEEEEEeeCC--CCEEE
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFI  344 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~--~-~l~s~s~dg~I~iwd~~~~~--~~~~~-~~~~~v~~l~~~p~~--~~~l~  344 (645)
                          ......+.+|.+.|++++|+++  + +|++|+.||.|++||+.+++  .+..+ .|...|++++|+| +  +++++
T Consensus        43 ----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~  117 (753)
T 3jro_A           43 ----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLL  117 (753)
T ss_dssp             ----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEE
T ss_pred             ----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEE
Confidence                3446778899999999999876  5 89999999999999999886  44444 4899999999999 7  89999


Q ss_pred             EEeCCCcEEEEeCCCC---cEEEeeccCCCeEEEEEcc-------------CCCEEEEEecCCeEEEEEecCCceeeeEE
Q 006424          345 SGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLEKV  408 (645)
Q Consensus       345 s~s~dg~i~vwd~~~~---~~~~~~~~~~~v~~l~~sp-------------~g~~l~~g~~dg~i~iwd~~~~~~~~~~~  408 (645)
                      +|+.||.|++||++++   .......|...|.+++|+|             ++..+++|+.||.|++||++.........
T Consensus       118 sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~  197 (753)
T 3jro_A          118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  197 (753)
T ss_dssp             EEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             EEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence            9999999999999886   3455678999999999999             58999999999999999998775432211


Q ss_pred             eeccccccCCCCeEEEEEcCC---CCcEEEEEECCCeEEEEECCcce-----eeEeecCCCCCeEEEEEecCCCEEEEEe
Q 006424          409 DFHDRKKTSGNKITGIQFSRD---ESQRIMITSEDSKLRILDGVDVI-----HKFKGLPKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       409 ~~~~~~~~~~~~i~~i~~s~~---g~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                         .....|...|++++|+|+   + .++++++.||.|++||.....     .......+...|.+++|+|++++|++|+
T Consensus       198 ---~~~~~h~~~V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  273 (753)
T 3jro_A          198 ---STLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (753)
T ss_dssp             ---EEECCCSSCEEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred             ---eeecCCCCcEEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence               112235689999999999   6 899999999999999977532     2233344788999999999999999999


Q ss_pred             CCccEEEEeCCCCC
Q 006424          481 DDCRVYVWNYDELC  494 (645)
Q Consensus       481 ~dg~I~iwd~~~~~  494 (645)
                      .||.|++|++....
T Consensus       274 ~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          274 GDNKVTLWKENLEG  287 (753)
T ss_dssp             SSSCEECCBCCSSS
T ss_pred             CCCEEEEEecCCCC
Confidence            99999999998653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.6e-32  Score=277.55  Aligned_cols=279  Identities=15%  Similarity=0.107  Sum_probs=224.0

Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      ...+|.+.|++++|+|++++|++|+.||.|++|++.++..                                        
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~----------------------------------------   45 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----------------------------------------   45 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----------------------------------------
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc----------------------------------------
Confidence            3468999999999999999999999999999999976321                                        


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEec-CCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQV-GCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~-~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                        ......+.+|...|.+++|+|++  +|++|+.||.|++||+ .+++......  |...|.+++|+|  ++++++++.|
T Consensus        46 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d  121 (342)
T 1yfq_A           46 --NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG--DDKLIAASWD  121 (342)
T ss_dssp             --EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET--TTEEEEEETT
T ss_pred             --cccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC--CCEEEEEcCC
Confidence              01234555899999999999875  5999999999999999 8887766667  999999999998  7899999999


Q ss_pred             CcEEEEeCCC---------CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecC-CceeeeEEeeccccccCCC
Q 006424          350 GKVRIWGVCE---------KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDLKLEKVDFHDRKKTSGN  419 (645)
Q Consensus       350 g~i~vwd~~~---------~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~  419 (645)
                      +.|++||+++         ++......+...+.+++|+|++  +++++.+|.|++||++. ..........     .+..
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~  194 (342)
T 1yfq_A          122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEES-----GLKY  194 (342)
T ss_dssp             SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEEC-----SCSS
T ss_pred             CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeec-----CCCC
Confidence            9999999987         6655555688999999999987  99999999999999987 5433222211     2347


Q ss_pred             CeEEEEEcC-CCCcEEEEEECCCeEEEEECCcc--------eeeEeecC-------CCCCeEEEEEecCCCEEEEEeCCc
Q 006424          420 KITGIQFSR-DESQRIMITSEDSKLRILDGVDV--------IHKFKGLP-------KSGSQMSASFTTTGKHIISIGDDC  483 (645)
Q Consensus       420 ~i~~i~~s~-~g~~~l~~~s~dg~I~iwd~~~~--------~~~~~~~~-------~~~~i~~v~~sp~~~~l~t~s~dg  483 (645)
                      .+.+++|+| ++ .++++++.||.|++|+....        ...+..+.       |...|.+++|+|++++|++++.||
T Consensus       195 ~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  273 (342)
T 1yfq_A          195 QIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG  273 (342)
T ss_dssp             CEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred             ceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc
Confidence            899999999 87 89999999999999997533        33444421       244999999999999999999999


Q ss_pred             cEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCc
Q 006424          484 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL  536 (645)
Q Consensus       484 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~  536 (645)
                      .|++||+.+++....         ..-++.+.+.+++  |++..|++.+.|+.
T Consensus       274 ~i~vwd~~~~~~~~~---------~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          274 IISCWNLQTRKKIKN---------FAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             CEEEEETTTTEEEEE---------CCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             eEEEEcCccHhHhhh---------hhcccCCCceEec--CCCCeEEEEecCCc
Confidence            999999987632111         1111256677777  88988888777754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.2e-32  Score=286.17  Aligned_cols=304  Identities=13%  Similarity=0.134  Sum_probs=233.4

Q ss_pred             hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424           95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK  174 (645)
Q Consensus        95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (645)
                      +...|.+|...|..++|.+  .. +++.+.            |+.++.|-                -....         
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~-l~s~~~------------dg~i~iw~----------------~~~~~---------   47 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SF-TVSCSG------------DGYLKVWD----------------NKLLD---------   47 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SE-EEEEET------------TSEEEEEE----------------SBCCT---------
T ss_pred             hhhhhhhhhcCeEEEEecC--Ce-EEEEcC------------CCEEEEEE----------------CCCcc---------
Confidence            4557889999999999988  33 666666            55554440                00000         


Q ss_pred             hHhhhcccccccccccccccccccccCcEEEEEECCC----C---CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCccc
Q 006424          175 MEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPD----G---RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS  247 (645)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd----g---~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  247 (645)
                                 ..........+.+|.+.|++++|+|+    +   ++|++|+.||.|++||+.++...            
T Consensus        48 -----------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~------------  104 (397)
T 1sq9_A           48 -----------NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET------------  104 (397)
T ss_dssp             -----------TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT------------
T ss_pred             -----------cccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc------------
Confidence                       00012245567799999999999999    9   99999999999999999863210            


Q ss_pred             CCCCceEEecccCCCcceeecCCCceeccCCCceeeccC-----ccCeEEEEEc----CCC-e-EEEEeCCCcEEEEecC
Q 006424          248 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGH-----KGDVLDLAWS----NSN-Y-LLSCSMDKTVRMWQVG  316 (645)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-----~~~V~~l~~s----~~~-~-l~s~s~dg~I~iwd~~  316 (645)
                                                  .......+.+|     ...|.+++|+    |++ . |++++.||.|++||+.
T Consensus       105 ----------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  156 (397)
T 1sq9_A          105 ----------------------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH  156 (397)
T ss_dssp             ----------------------------CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred             ----------------------------ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence                                        00115667778     5999999999    887 7 9999999999999998


Q ss_pred             C------CeEEE-----Ee--------cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eec---c---CC
Q 006424          317 C------NQCLN-----VF--------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD---V---RD  370 (645)
Q Consensus       317 ~------~~~~~-----~~--------~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~---~---~~  370 (645)
                      +      ++.+.     .+        .|...|.+++|+| ++ ++++++.|+.|++||+++++... +..   |   ..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~  234 (397)
T 1sq9_A          157 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN  234 (397)
T ss_dssp             SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred             ccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC
Confidence            8      55544     44        2688999999999 88 99999999999999999887665 444   6   89


Q ss_pred             CeEEEEEccCCCEEEEEecC---CeEEEEEecCCceeeeEEeecc-------ccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424          371 VISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHD-------RKKTSGNKITGIQFSRDESQRIMITSED  440 (645)
Q Consensus       371 ~v~~l~~sp~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~i~~i~~s~~g~~~l~~~s~d  440 (645)
                      .|.+++|+|++++|++++.|   |.|++||+++...... +....       ....|...|.+++|+|++ .+|++++.|
T Consensus       235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  312 (397)
T 1sq9_A          235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS-LSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWD  312 (397)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEE-ECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETT
T ss_pred             ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccce-eccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCC
Confidence            99999999999999999999   9999999987764322 21100       000145889999999997 899999999


Q ss_pred             CeEEEEECCcceeeEeec------CC---------------CCCeEEEEEecCC----------CEEEEEeCCccEEEEe
Q 006424          441 SKLRILDGVDVIHKFKGL------PK---------------SGSQMSASFTTTG----------KHIISIGDDCRVYVWN  489 (645)
Q Consensus       441 g~I~iwd~~~~~~~~~~~------~~---------------~~~i~~v~~sp~~----------~~l~t~s~dg~I~iwd  489 (645)
                      +.|++||+..........      .|               ...|.+++|+|++          ++|++++.||.|++|+
T Consensus       313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          313 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            999999987554444433      45               8899999999998          7999999999999999


Q ss_pred             CCCC
Q 006424          490 YDEL  493 (645)
Q Consensus       490 ~~~~  493 (645)
                      +.++
T Consensus       393 ~~~g  396 (397)
T 1sq9_A          393 EAGG  396 (397)
T ss_dssp             EEC-
T ss_pred             cCCC
Confidence            9875

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.8e-32  Score=282.99  Aligned_cols=245  Identities=19%  Similarity=0.342  Sum_probs=205.0

Q ss_pred             cccCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          198 AHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       198 ~H~~~V~~l~fspd----g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      .|.+.|++++|+|+    |++|++|+.||.|++||+.+                                          
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~------------------------------------------  104 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT------------------------------------------  104 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT------------------------------------------
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh------------------------------------------
Confidence            37789999999999    67999999999999999986                                          


Q ss_pred             eccCCCceeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEe----cCCCcEEEEEEeeCCCCEEEEEe
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGS  347 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~----~~~~~v~~l~~~p~~~~~l~s~s  347 (645)
                         .+.+..+.+|...|.+++|+| ++ +|++++.||.|++||+++++.+..+    .|...|.+++|+| ++++|++++
T Consensus       105 ---~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  180 (366)
T 3k26_A          105 ---MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCG  180 (366)
T ss_dssp             ---CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEE
T ss_pred             ---ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEec
Confidence               445677889999999999999 65 8999999999999999999998887    5889999999999 999999999


Q ss_pred             CCCcEEEEeCCCCcEEE-----------------------------eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEe
Q 006424          348 IDGKVRIWGVCEKRVVD-----------------------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  398 (645)
Q Consensus       348 ~dg~i~vwd~~~~~~~~-----------------------------~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~  398 (645)
                      .||.|++||+++++...                             ...|...|.+++|+  ++++++++.||.|++||+
T Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~  258 (366)
T 3k26_A          181 MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKP  258 (366)
T ss_dssp             TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEE
T ss_pred             CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeC
Confidence            99999999998765332                             22388999999998  779999999999999999


Q ss_pred             cCCceeeeE-------EeeccccccCCCCeEEEEEcCC--CCcEEEEEECCCeEEEEECCcc------eeeEeecCCCCC
Q 006424          399 SGNDLKLEK-------VDFHDRKKTSGNKITGIQFSRD--ESQRIMITSEDSKLRILDGVDV------IHKFKGLPKSGS  463 (645)
Q Consensus       399 ~~~~~~~~~-------~~~~~~~~~~~~~i~~i~~s~~--g~~~l~~~s~dg~I~iwd~~~~------~~~~~~~~~~~~  463 (645)
                      .........       .........|...|.+++|+|+  + .+|++++.||.|++||+...      ...+..+.+...
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  337 (366)
T 3k26_A          259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAA  337 (366)
T ss_dssp             SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSC
T ss_pred             CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCccccceEEcccccCCc
Confidence            876541110       0011112234578999999999  7 89999999999999998742      224445444799


Q ss_pred             eEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          464 QMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       464 i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      |.+++|+|++++|++++.||.|++||+.
T Consensus       338 v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          338 IRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             eEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            9999999999999999999999999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.6e-31  Score=276.42  Aligned_cols=203  Identities=10%  Similarity=0.033  Sum_probs=166.4

Q ss_pred             cCccCeEEEEEcCCC-eEE--EEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc
Q 006424          285 GHKGDVLDLAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR  361 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~-~l~--s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~  361 (645)
                      .+...+.+++|+||| +++  +++.|++|++||+.+++++..+.|...|.+++|+| +++++++++.+ .+++|+..++.
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence            455678999999998 555  44578999999999999999999999999999999 99999999855 56666666655


Q ss_pred             EEE---eeccCCCeEEEEEccCCCEEEEEecCC----eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424          362 VVD---WADVRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  434 (645)
Q Consensus       362 ~~~---~~~~~~~v~~l~~sp~g~~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l  434 (645)
                      ...   ...|...|.+++|+|+++++++++.|+    .+.+|++...........   ....|...|++++|+|+| .+|
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~V~~~~~Spdg-~~l  284 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSK---QVTNRFKGITSMDVDMKG-ELA  284 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEE---EEESSCSCEEEEEECTTS-CEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeee---eecCCCCCeEeEEECCCC-Cce
Confidence            432   356778899999999999999999887    688899877654332111   112245789999999998 899


Q ss_pred             EEEECCCeEEEEECCcceeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          435 MITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       435 ~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ++|+.|+.|+|||+.+....... ..|...|++++|+|||++||+||.|++|+|||+...
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999876554443 458999999999999999999999999999999755

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.3e-32  Score=277.54  Aligned_cols=249  Identities=14%  Similarity=0.193  Sum_probs=206.1

Q ss_pred             cccCcEEEEEECCC---CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          198 AHKGCIWTLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       198 ~H~~~V~~l~fspd---g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      +|.+.|++++|+|+   |++|++|+.||.|++||+.++                                          
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------------------------------------  100 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAP------------------------------------------  100 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSC------------------------------------------
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCC------------------------------------------
Confidence            79999999999998   699999999999999999872                                          


Q ss_pred             ccCCCceeeccCccCeEEEEE------cCCC-eEEEEeCCCcEEEEecCCCe-EEEEec-C----CCcEEEEE----Eee
Q 006424          275 IEESPLQELHGHKGDVLDLAW------SNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVFD-H----HNYVTCVQ----FNP  337 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~------s~~~-~l~s~s~dg~I~iwd~~~~~-~~~~~~-~----~~~v~~l~----~~p  337 (645)
                        ...+..+.+|...|.++.|      +|++ +|++++.||.|++||+.+++ .+..+. +    ...+.+++    |+|
T Consensus       101 --~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (357)
T 3i2n_A          101 --EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ  178 (357)
T ss_dssp             --SSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred             --CccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence              2256788899999999965      5666 89999999999999999876 566653 2    33899998    677


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc---CCCEEEEEecCCeEEEEEecCCceeeeEEeecccc
Q 006424          338 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK  414 (645)
Q Consensus       338 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp---~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  414 (645)
                       +++++++++.|+.|++||+++++......+...|.+++|+|   ++.++++++.||.|++||++....... +... ..
T Consensus       179 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~-~~  255 (357)
T 3i2n_A          179 -EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG-FASV-SE  255 (357)
T ss_dssp             -CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE-EEEE-EE
T ss_pred             -CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc-eeee-cc
Confidence             89999999999999999999999888888999999999999   999999999999999999986543222 1110 11


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-------------------eeeEeecCCCCCeEEEEEecCCCE
Q 006424          415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-------------------IHKFKGLPKSGSQMSASFTTTGKH  475 (645)
Q Consensus       415 ~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-------------------~~~~~~~~~~~~i~~v~~sp~~~~  475 (645)
                      ..|...|++++|+|++..++++++.||.|++||+...                   ........|...|.+++|+|++++
T Consensus       256 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  335 (357)
T 3i2n_A          256 KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG  335 (357)
T ss_dssp             ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT
T ss_pred             CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe
Confidence            2346899999999998448999999999999997631                   122333458889999999999999


Q ss_pred             EE-EEeCCccEEEEeCCCC
Q 006424          476 II-SIGDDCRVYVWNYDEL  493 (645)
Q Consensus       476 l~-t~s~dg~I~iwd~~~~  493 (645)
                      |+ +++.||.|++||+.+.
T Consensus       336 l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          336 LCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEEEEETTSEEEEEEECC-
T ss_pred             EEEEecCCCcEEEEECCCc
Confidence            98 8999999999999865

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-33  Score=291.45  Aligned_cols=307  Identities=10%  Similarity=0.052  Sum_probs=229.3

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .-...|.+++|||||+++||++.|++|+  |...                                             .
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~---------------------------------------------~   45 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKY---------------------------------------------A   45 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECC---------------------------------------------C
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccc---------------------------------------------c
Confidence            4557899999999999999999999999  6443                                             1


Q ss_pred             CCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424          278 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  357 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~  357 (645)
                         ..+.+|...|.+++|+|+|      .++.+.+|+.+.. .+..+.|...|.+++|+| ++..||+++.||.|++||.
T Consensus        46 ---~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~-~~~~~~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~  114 (588)
T 2j04_A           46 ---KDINCNSKNLFHVKEFPLE------FENKLDFELAQQN-GLLNSQPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKD  114 (588)
T ss_dssp             ---SCCSSBGGGTEEEEEECCC------CCCTTTTSCCCSS-CSSTTSCSCCEEEEEECS-SSSCEEEEETTSCEEEEET
T ss_pred             ---ceecCCCccEEEEEECCCC------CcceEEEEeCCCc-eEeecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeC
Confidence               2336899999999999998      4566555554322 233445788999999999 9999999999999999996


Q ss_pred             CCCcEEEeeccCC-----CeEEEEEccCCCEEEEEecCCeEEEEEecCCce--e--eeEEeeccccccCCCCeEEEEEcC
Q 006424          358 CEKRVVDWADVRD-----VISAICYIPDGKGFIVGSITGTCHFYKASGNDL--K--LEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       358 ~~~~~~~~~~~~~-----~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~--~--~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      .+ ....+. |..     .+.+++|||||++|++|+.||+|++||+.++..  +  .....+..+...|...|.+++|+|
T Consensus       115 ~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP  192 (588)
T 2j04_A          115 NK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE  192 (588)
T ss_dssp             TE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred             Cc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC
Confidence            44 333334 554     499999999999999999999999999998753  0  011122223344678999999999


Q ss_pred             CCCcEEEEEECCCeEEEEECCcce-----eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc-CCCcccC
Q 006424          429 DESQRIMITSEDSKLRILDGVDVI-----HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF-PSSKQKN  502 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~-~~~~~~~  502 (645)
                      +|   +++++.|+.|++||+....     ..+. ..|...|.+++|+  |+.||+++ +++|++||+.+++. .......
T Consensus       193 dg---Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~  265 (588)
T 2j04_A          193 DV---LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSL  265 (588)
T ss_dssp             TE---EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCC
T ss_pred             Cc---EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCC
Confidence            95   8899999999999987433     2232 2377899999999  68999997 69999999998865 3331223


Q ss_pred             Ccceeeee--ecCCcEEEEec--------------CCCCccccccCCCCccccCccccccccCCccCCCCccccCccccC
Q 006424          503 SVRSCEHF--FSEGVSVAVQW--------------PGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSN  566 (645)
Q Consensus       503 ~~~~~~~~--~~~g~~~~v~~--------------s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~  566 (645)
                      .....+.|  ++++..+++++              +||+..++..     .+.+..|+..........+...+++++|||
T Consensus       266 ~~V~~va~~~s~d~~~La~a~edG~klw~~d~~~~spd~~l~a~~-----d~~v~lW~~~g~~l~~~~~~~~I~~va~SP  340 (588)
T 2j04_A          266 ENFHIIPLNHEKESTILLMSNKTSYKVLLEDELHVTADNIIAPYL-----EKKFKKWSTIWNEFNNYETTLVIHGISLSP  340 (588)
T ss_dssp             SCCCEEEETTCSSCEEEEECSSCEEEEEESSSEEEECCCSSHHHH-----HHHHHHTTTTTTSSSSSCCEEEEEEEEECT
T ss_pred             ceEEEEEeeeCCCCCEEEEEcCCCCEEEeeccEEECCCceEEEEc-----CCEEEEEECCCCceeeeccceEEEEEEECC
Confidence            33444577  78887778777              6667666653     355677876433333333455689999999


Q ss_pred             CCCCCcCCCC
Q 006424          567 DGPCRGSATW  576 (645)
Q Consensus       567 dg~~l~s~s~  576 (645)
                      ||+.+|+++.
T Consensus       341 dG~~lA~~~~  350 (588)
T 2j04_A          341 DGYSIAIVYD  350 (588)
T ss_dssp             TSSEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            9999987765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-31  Score=265.35  Aligned_cols=289  Identities=19%  Similarity=0.267  Sum_probs=231.4

Q ss_pred             chhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccc
Q 006424           94 CMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKAN  173 (645)
Q Consensus        94 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (645)
                      .++..|.+|...|..++| +++.. +++.+.            |+.++.|                              
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~------------dg~v~vw------------------------------   44 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSK-VASVSR------------DGTVRLW------------------------------   44 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTE-EEEEET------------TSEEEEE------------------------------
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCE-EEEEEc------------CCcEEEE------------------------------
Confidence            466688999999999999 77666 666666            5544444                              


Q ss_pred             hhHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCce
Q 006424          174 KMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK  253 (645)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (645)
                           .       .........+..|.+.|++++|+|++++|++|+.||.|++|++....                    
T Consensus        45 -----~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~--------------------   92 (313)
T 3odt_A           45 -----S-------KDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS--------------------   92 (313)
T ss_dssp             -----E-------ESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT--------------------
T ss_pred             -----E-------CCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC--------------------
Confidence                 0       01112344567899999999999999999999999999999987621                    


Q ss_pred             EEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEE
Q 006424          254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTC  332 (645)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~  332 (645)
                                            ....+..+.+|...|.+++|+ .+.+++++.|+.|++||  .++....+ .|...+.+
T Consensus        93 ----------------------~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~  147 (313)
T 3odt_A           93 ----------------------GEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWD  147 (313)
T ss_dssp             ----------------------TSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEE
T ss_pred             ----------------------CCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeE
Confidence                                  134567788999999999994 45999999999999999  56666655 48899999


Q ss_pred             EEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeec
Q 006424          333 VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH  411 (645)
Q Consensus       333 l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  411 (645)
                      ++|+|.+++++++++.|+.|++||.... ...+.. +...+.+++|+|++. +++++.||.|++||+++...... +.  
T Consensus       148 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~-~~--  222 (313)
T 3odt_A          148 AKVVSFSENKFLTASADKTIKLWQNDKV-IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT-YE--  222 (313)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTEE-EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE-EE--
T ss_pred             EEEccCCCCEEEEEECCCCEEEEecCce-EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh-hh--
Confidence            9999878899999999999999994333 333444 889999999999998 99999999999999987764322 22  


Q ss_pred             cccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          412 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       412 ~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                          .|...|++++|+|++  .+++++.||.|++||+.+.........+...|.+++|+|+++ +++++.||.|++||+.
T Consensus       223 ----~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          223 ----GHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             ----CCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred             ----cCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence                235789999999997  589999999999999886554444455788999999999998 6678999999999998


Q ss_pred             CCCc
Q 006424          492 ELCF  495 (645)
Q Consensus       492 ~~~~  495 (645)
                      ++..
T Consensus       296 ~~~~  299 (313)
T 3odt_A          296 KSRW  299 (313)
T ss_dssp             GGGC
T ss_pred             CCce
Confidence            7743

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.1e-32  Score=282.16  Aligned_cols=251  Identities=11%  Similarity=0.146  Sum_probs=190.6

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ..+++.+|.+.|++++|+|++++|++|+.||+|++||+.++..                                     
T Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~-------------------------------------   89 (377)
T 3dwl_C           47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT-------------------------------------   89 (377)
T ss_dssp             ECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C-------------------------------------
T ss_pred             EEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc-------------------------------------
Confidence            4566889999999999999999999999999999999987320                                     


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE---EEEe-c-CCCcEEEEEEeeCCCCEEEE
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVF-D-HHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~---~~~~-~-~~~~v~~l~~~p~~~~~l~s  345 (645)
                           ......+.+|...|.+++|+|++ +|++++.|+.|++||+++++.   ...+ . |...|.+++|+| ++++|++
T Consensus        90 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~  163 (377)
T 3dwl_C           90 -----WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAA  163 (377)
T ss_dssp             -----CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEE
T ss_pred             -----eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEE
Confidence                 12456677899999999999987 899999999999999998873   4555 3 899999999999 9999999


Q ss_pred             EeCCCcEEEEeCCC------------------CcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeE
Q 006424          346 GSIDGKVRIWGVCE------------------KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK  407 (645)
Q Consensus       346 ~s~dg~i~vwd~~~------------------~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~  407 (645)
                      ++.|+.|++||++.                  +++.....|...|++++|+|++++|++++.||.|++||+.+...+...
T Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~  243 (377)
T 3dwl_C          164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA  243 (377)
T ss_dssp             EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred             EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence            99999999999852                  334443388999999999999999999999999999999987753210


Q ss_pred             EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce-----------------------------------
Q 006424          408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-----------------------------------  452 (645)
Q Consensus       408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~-----------------------------------  452 (645)
                         ......|...|.+++|+|++ .+|++++.++.+ +|+.....                                   
T Consensus       244 ---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (377)
T 3dwl_C          244 ---LITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT  318 (377)
T ss_dssp             ---CCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred             ---eEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence               11122345789999999997 788888766665 66543100                                   


Q ss_pred             ---eeEe--------------ecCCCCCeEEEEEecCC-C---EEEEEeCCccEEEEeC
Q 006424          453 ---HKFK--------------GLPKSGSQMSASFTTTG-K---HIISIGDDCRVYVWNY  490 (645)
Q Consensus       453 ---~~~~--------------~~~~~~~i~~v~~sp~~-~---~l~t~s~dg~I~iwd~  490 (645)
                         ..+.              ...|...|+++.+.+.. .   .|+|||.||.|++||+
T Consensus       319 ~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence               0000              01278899999976543 3   6999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.2e-31  Score=275.89  Aligned_cols=284  Identities=16%  Similarity=0.216  Sum_probs=221.0

Q ss_pred             cccccCc--EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          196 IQAHKGC--IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       196 l~~H~~~--V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      ..+|.+.  +.++.|++  ..+++++.||.|++||+.++.                                        
T Consensus        87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~----------------------------------------  124 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGS----------------------------------------  124 (401)
T ss_dssp             CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCC----------------------------------------
T ss_pred             CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCc----------------------------------------
Confidence            3466665  45566665  568889999999999998742                                        


Q ss_pred             eccCCCceeec-cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          274 QIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       274 ~~~~~~~~~l~-~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                           ....+. .|...|.+++|+|++ +|++|+.||.|++||+.+++.+..+ .|...|.+++|+   ++++++++.||
T Consensus       125 -----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg  196 (401)
T 4aez_A          125 -----VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSG  196 (401)
T ss_dssp             -----EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE---TTEEEEEETTS
T ss_pred             -----EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC---CCEEEEEcCCC
Confidence                 233333 388999999999987 8999999999999999999988887 488999999994   57999999999


Q ss_pred             cEEEEeCCC-Cc-EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          351 KVRIWGVCE-KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       351 ~i~vwd~~~-~~-~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      .|++||++. +. ...+..|...|.+++|+|++++|++|+.||.|++||+++......   +.    .|...|.+++|+|
T Consensus       197 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~---~~----~~~~~v~~~~~~p  269 (401)
T 4aez_A          197 AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT---KT----NHNAAVKAVAWCP  269 (401)
T ss_dssp             EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE---EC----CCSSCCCEEEECT
T ss_pred             CEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE---ec----CCcceEEEEEECC
Confidence            999999984 33 455778999999999999999999999999999999987654322   11    2357899999999


Q ss_pred             CCCcEEEEEE--CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe--CCccEEEEeCCCCCcCCCcccCCc
Q 006424          429 DESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSSKQKNSV  504 (645)
Q Consensus       429 ~g~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~  504 (645)
                      ++..++++++  .|+.|++||+......... .+...+.+++|+|+++++++++  .||.|++||+.++...        
T Consensus       270 ~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~--------  340 (401)
T 4aez_A          270 WQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT--------  340 (401)
T ss_dssp             TSTTEEEEECCTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE--------
T ss_pred             CCCCEEEEecCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce--------
Confidence            8877888876  7999999998754433333 2667899999999999999954  8999999998764110        


Q ss_pred             ceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCC
Q 006424          505 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLW  584 (645)
Q Consensus       505 ~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iW  584 (645)
                       ....                                          ...+...+.+++|+|||+++++++. |+.|++|
T Consensus       341 -~~~~------------------------------------------~~~h~~~v~~~~~s~dg~~l~s~~~-dg~i~iw  376 (401)
T 4aez_A          341 -KQVD------------------------------------------IPAHDTRVLYSALSPDGRILSTAAS-DENLKFW  376 (401)
T ss_dssp             -EEEE------------------------------------------EECCSSCCCEEEECTTSSEEEEECT-TSEEEEE
T ss_pred             -eEEE------------------------------------------ecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEE
Confidence             0000                                          0112334556667777777777776 8889999


Q ss_pred             CCccC
Q 006424          585 DVTID  589 (645)
Q Consensus       585 d~~~~  589 (645)
                      ++.++
T Consensus       377 ~~~~~  381 (401)
T 4aez_A          377 RVYDG  381 (401)
T ss_dssp             ECCC-
T ss_pred             ECCCC
Confidence            98877

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.7e-30  Score=276.49  Aligned_cols=261  Identities=20%  Similarity=0.344  Sum_probs=213.4

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ...++.+|.+.|++++|+|++ +|++|+.||+|++||+.+                                        
T Consensus       154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~----------------------------------------  192 (464)
T 3v7d_B          154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK----------------------------------------  192 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT----------------------------------------
T ss_pred             EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC----------------------------------------
Confidence            345678999999999999988 999999999999999987                                        


Q ss_pred             ceeccCCCceeeccCccCeEEEEEc--CCC-eEEEEeCCCcEEEEecCCCeEE-----------------------EEe-
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWS--NSN-YLLSCSMDKTVRMWQVGCNQCL-----------------------NVF-  324 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s--~~~-~l~s~s~dg~I~iwd~~~~~~~-----------------------~~~-  324 (645)
                           +..+..+.+|...|.+++|+  +++ ++++|+.|++|++||+.++...                       ..+ 
T Consensus       193 -----~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (464)
T 3v7d_B          193 -----GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  267 (464)
T ss_dssp             -----TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred             -----CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence                 34567788999999999998  454 8999999999999999876532                       222 


Q ss_pred             cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce
Q 006424          325 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL  403 (645)
Q Consensus       325 ~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~  403 (645)
                      +|...+.++  ++ +++++++|+.|+.|++||+++++... +..|...|.+++|+|+++++++|+.||.|++||+++...
T Consensus       268 ~~~~~v~~~--~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~  344 (464)
T 3v7d_B          268 GHMASVRTV--SG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL  344 (464)
T ss_dssp             CCSSCEEEE--EE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred             CccceEEEE--cC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Confidence            477778777  45 78999999999999999999887665 667899999999999999999999999999999987764


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCc
Q 006424          404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  483 (645)
Q Consensus       404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg  483 (645)
                      ...   +.    .|...|.++.|++   .++++++.||.|++||+.+....+... +...+..++|+|++++|++|+ ||
T Consensus       345 ~~~---~~----~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg  412 (464)
T 3v7d_B          345 MYT---LQ----GHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-EN  412 (464)
T ss_dssp             EEE---EC----CCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TT
T ss_pred             EEE---Ee----CCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CC
Confidence            322   22    2457899999984   589999999999999998766655553 666788889999999999998 89


Q ss_pred             cEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecC
Q 006424          484 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  522 (645)
Q Consensus       484 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s  522 (645)
                      .|++||+.+++......         ..+.+.+.+++|+
T Consensus       413 ~i~iwd~~~g~~~~~~~---------~~~~~~v~~v~~~  442 (464)
T 3v7d_B          413 QFNIYNLRSGKLVHANI---------LKDADQIWSVNFK  442 (464)
T ss_dssp             EEEEEETTTCCEEESCT---------TTTCSEEEEEEEE
T ss_pred             eEEEEECCCCcEEehhh---------ccCCCcEEEEEec
Confidence            99999999885432211         1124556677775

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.98  E-value=8.5e-31  Score=271.30  Aligned_cols=250  Identities=13%  Similarity=0.178  Sum_probs=203.8

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ..+.+.+|.+.|++++|+|++++|++|+.||.|++||+.++..                                     
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------------------   86 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-------------------------------------   86 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-------------------------------------
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee-------------------------------------
Confidence            4556789999999999999999999999999999999976321                                     


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE---EEEe--cCCCcEEEEEEeeCCCCEEEE
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVF--DHHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~---~~~~--~~~~~v~~l~~~p~~~~~l~s  345 (645)
                            .....+.+|...|.+++|+|++ +|++++.|+.|++||++.+..   ...+  .|...|.+++|+| ++++|++
T Consensus        87 ------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  159 (372)
T 1k8k_C           87 ------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAA  159 (372)
T ss_dssp             ------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEE
T ss_pred             ------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEE
Confidence                  1123346789999999999987 899999999999999987762   2332  4788999999999 9999999


Q ss_pred             EeCCCcEEEEeCC------------------CCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424          346 GSIDGKVRIWGVC------------------EKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  406 (645)
Q Consensus       346 ~s~dg~i~vwd~~------------------~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~  406 (645)
                      ++.|+.|++||++                  .++.. .+..|...|.+++|+|++++|++++.||.|++||+++......
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  239 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT  239 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence            9999999999964                  44444 4568889999999999999999999999999999987764322


Q ss_pred             EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--cee---------------------e---------
Q 006424          407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIH---------------------K---------  454 (645)
Q Consensus       407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--~~~---------------------~---------  454 (645)
                       +.      .+...+.+++|+|++ .+++++ .|+.|++|++..  ..-                     .         
T Consensus       240 -~~------~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (372)
T 1k8k_C          240 -LA------SETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS  310 (372)
T ss_dssp             -EE------CSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred             -Ec------cCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccc
Confidence             22      234689999999997 666666 999999999765  210                     0         


Q ss_pred             --------Eee-cCCCCCeEEEEEe-cCC---CEEEEEeCCccEEEEeCCCCC
Q 006424          455 --------FKG-LPKSGSQMSASFT-TTG---KHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       455 --------~~~-~~~~~~i~~v~~s-p~~---~~l~t~s~dg~I~iwd~~~~~  494 (645)
                              ... ..|...|++++|+ ++|   ++|++|+.||.|++||+.+++
T Consensus       311 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          311 SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             --------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence                    111 2588899999966 666   999999999999999997653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.98  E-value=5.1e-30  Score=259.33  Aligned_cols=237  Identities=16%  Similarity=0.270  Sum_probs=190.0

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce-
Q 006424          203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ-  281 (645)
Q Consensus       203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  281 (645)
                      .++|+||+++ +||+| .|++|+|||+.+++                                             .++ 
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~---------------------------------------------~~~~   60 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGD---------------------------------------------ILQL   60 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCC---------------------------------------------EEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCC---------------------------------------------EEEE
Confidence            5789999986 77766 59999999998743                                             233 


Q ss_pred             -eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424          282 -ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  358 (645)
Q Consensus       282 -~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  358 (645)
                       .+.+|...|++++|+|++ +|++|+.||+|++||+++++.+..+. |...+.++.+   ++..+++++.++.+++|+..
T Consensus        61 ~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~  137 (318)
T 4ggc_A           61 LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVR  137 (318)
T ss_dssp             EECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETT
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecC
Confidence             345788899999999997 89999999999999999999988875 7777776655   56899999999999999987


Q ss_pred             CCc--EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE-
Q 006424          359 EKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM-  435 (645)
Q Consensus       359 ~~~--~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~-  435 (645)
                      ...  ......|...+..+.++++++++++++.||.|++||+++.+.......   ....+...|.++.++|++...+. 
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~  214 (318)
T 4ggc_A          138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ---TFTQHQGAVKAVAWCPWQSNVLAT  214 (318)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE---EECCCCSCEEEEEECTTSTTEEEE
T ss_pred             CCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee---eecccCCceEEEEecCCCCcEEEE
Confidence            654  345778999999999999999999999999999999987654322111   11223578999999998766554 


Q ss_pred             -EEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe--CCccEEEEeCCCC
Q 006424          436 -ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDEL  493 (645)
Q Consensus       436 -~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s--~dg~I~iwd~~~~  493 (645)
                       +++.++.|++||......... ..+...+..+.|+|+++.+++++  .|+.|++||+.++
T Consensus       215 ~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~  274 (318)
T 4ggc_A          215 GGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  274 (318)
T ss_dssp             EECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             EecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence             456789999999875443333 23677899999999999988765  7999999999876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=3.8e-30  Score=273.00  Aligned_cols=281  Identities=20%  Similarity=0.307  Sum_probs=222.0

Q ss_pred             ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      .+|...|+|+.|  ++++|++|+.||.|++||+.+                                             
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~---------------------------------------------  162 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT---------------------------------------------  162 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS---------------------------------------------
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC---------------------------------------------
Confidence            456778999887  789999999999999999986                                             


Q ss_pred             CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      ++....+.+|.+.|.+++| .++.|++|+.||+|++||+.+++.+..+. |...|.+++|+   ++++++|+.||.|++|
T Consensus       163 ~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vw  238 (435)
T 1p22_A          163 LECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVW  238 (435)
T ss_dssp             CCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC---TTEEEEEETTSCEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEE
Confidence            4456778899999999999 34599999999999999999999988875 88899999996   4699999999999999


Q ss_pred             eCCCCcE----EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424          356 GVCEKRV----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       356 d~~~~~~----~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                      |++++..    ....+|...|.+++|  +++++++|+.||.|++||+++...... +  .    .|...|.++.++  + 
T Consensus       239 d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~-~--~----~~~~~v~~~~~~--~-  306 (435)
T 1p22_A          239 DMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT-L--N----GHKRGIACLQYR--D-  306 (435)
T ss_dssp             ECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE-E--E----CCSSCEEEEEEE--T-
T ss_pred             eCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE-E--c----CCCCcEEEEEeC--C-
Confidence            9987654    346788999999998  788999999999999999988765332 2  2    234789999994  3 


Q ss_pred             cEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee
Q 006424          432 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF  511 (645)
Q Consensus       432 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  511 (645)
                      .++++++.||.|++||++..........|...|.+++|  ++++|++|+.||.|++||+.++........          
T Consensus       307 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~----------  374 (435)
T 1p22_A          307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAG----------  374 (435)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTT----------
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcccccc----------
Confidence            69999999999999998865555555568899999998  789999999999999999876531111000          


Q ss_pred             cCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccC
Q 006424          512 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  589 (645)
Q Consensus       512 ~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~  589 (645)
                        ...           +.                     ....|...+++++|  |+..+++++. |+.|++||+.+.
T Consensus       375 --~~~-----------~~---------------------~~~~h~~~v~~l~~--~~~~l~s~s~-Dg~i~iwd~~~~  415 (435)
T 1p22_A          375 --TLC-----------LR---------------------TLVEHSGRVFRLQF--DEFQIVSSSH-DDTILIWDFLND  415 (435)
T ss_dssp             --TTE-----------EE---------------------EECCCSSCCCCEEE--CSSCEEECCS-SSEEEEEC----
T ss_pred             --chh-----------ee---------------------eccCCCCCeEEEEe--CCCEEEEEeC-CCEEEEEECCCC
Confidence              000           00                     01234445666667  7788888887 899999999876

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.98  E-value=5.1e-30  Score=257.27  Aligned_cols=251  Identities=17%  Similarity=0.196  Sum_probs=196.9

Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC--CeEEEEe-cCCCcEEEEEEeeC-CCCEEEEEeCCCcEEEE
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC--NQCLNVF-DHHNYVTCVQFNPI-DDNYFISGSIDGKVRIW  355 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~--~~~~~~~-~~~~~v~~l~~~p~-~~~~l~s~s~dg~i~vw  355 (645)
                      ..+.+|.+.|++++|+|++ +|++|+.|++|++||+..  .+.+..+ +|...|.+++|+|. ++++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            4577899999999999998 999999999999999974  3555666 59999999999862 37899999999999999


Q ss_pred             eCCCCc---EEEeeccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          356 GVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       356 d~~~~~---~~~~~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      |+++++   ...+..|...|.+++|+|+  |.+|++++.||.|++||++....... ..+.    .|...|.+++|+|++
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~~----~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-IIID----AHAIGVNSASWAPAT  157 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-EEEE----CCSSCEEEEEECCCC
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee-eeee----cccCccceEeecCCc
Confidence            998763   3446678999999999997  89999999999999999986532111 1112    245789999999973


Q ss_pred             ------------CcEEEEEECCCeEEEEECCcce----eeEeecCCCCCeEEEEEecCC---CEEEEEeCCccEEEEeCC
Q 006424          431 ------------SQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTG---KHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       431 ------------~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~~~~~i~~v~~sp~~---~~l~t~s~dg~I~iwd~~  491 (645)
                                  ..+|++++.|+.|++||++...    .......|...|.+++|+|++   .+|++++.|++|+|||++
T Consensus       158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                        2689999999999999976422    222334588999999999985   899999999999999997


Q ss_pred             CCCcCCCcccCCcceeee-eecCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424          492 ELCFPSSKQKNSVRSCEH-FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  545 (645)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~-~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~  545 (645)
                      +.......      .... ..+.+.+..++|+|++..|++.+.|+   .+++|+.
T Consensus       238 ~~~~~~~~------~~~~~~~~~~~v~~~~~s~~g~~las~~~D~---~v~lw~~  283 (297)
T 2pm7_B          238 NEQGPWKK------TLLKEEKFPDVLWRASWSLSGNVLALSGGDN---KVTLWKE  283 (297)
T ss_dssp             STTSCCEE------EESSSSCCSSCEEEEEECSSSCCEEEEETTS---CEEEEEE
T ss_pred             CCCCccce------eeeecccCCCcEEEEEECCCCCEEEEEcCCC---cEEEEEE
Confidence            64321110      0000 12356788999999999999887764   3567765

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.98  E-value=4.5e-31  Score=276.81  Aligned_cols=296  Identities=15%  Similarity=0.176  Sum_probs=219.5

Q ss_pred             CCCceeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEec--------------CCCcEEEEEEeeCCC
Q 006424          277 ESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------------HHNYVTCVQFNPIDD  340 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--------------~~~~v~~l~~~p~~~  340 (645)
                      ......+.+|.+.|++++|+| ++ +|++|+.||.|++||+.+++....+.              |...|.+++|+|.++
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  112 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT  112 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred             CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence            345667788999999999999 76 89999999999999998876554442              889999999999677


Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccC---CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424          341 NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  417 (645)
Q Consensus       341 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  417 (645)
                      ++|++++.||.|++||+.+++......+...+.++.++|.   +.++++++.+|.|++||+++...... +  .    .|
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~--~----~~  185 (408)
T 4a11_B          113 GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI-L--Q----GH  185 (408)
T ss_dssp             TCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE-E--C----CC
T ss_pred             cEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee-e--c----CC
Confidence            7999999999999999999998888889999999999984   45999999999999999987654322 1  1    24


Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce---eeEe-------------ecCCCCCeEEEEEecCCCEEEEEeC
Q 006424          418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI---HKFK-------------GLPKSGSQMSASFTTTGKHIISIGD  481 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~---~~~~-------------~~~~~~~i~~v~~sp~~~~l~t~s~  481 (645)
                      ...|.+++|+|++..++++++.||.|++||++...   ..+.             ...|...|.+++|+|++++|++++.
T Consensus       186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  265 (408)
T 4a11_B          186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT  265 (408)
T ss_dssp             CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence            57899999999985579999999999999986432   1111             1347889999999999999999999


Q ss_pred             CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccC
Q 006424          482 DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLG  561 (645)
Q Consensus       482 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  561 (645)
                      ||.|++||+.++............    .......                                           ..
T Consensus       266 dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~-------------------------------------------~~  298 (408)
T 4a11_B          266 DNRMRLWNSSNGENTLVNYGKVCN----NSKKGLK-------------------------------------------FT  298 (408)
T ss_dssp             TSCEEEEETTTCCBCCCCCCCCCC----CCSSCCC-------------------------------------------CE
T ss_pred             CCeEEEEECCCCccceeccccccc----cccccce-------------------------------------------eE
Confidence            999999999987432211100000    0000000                                           00


Q ss_pred             ccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCC--ccCCCCcceEEEEecCCCeEeEEEec
Q 006424          562 SWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       562 ~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                      ... ..+..++.++. ++.|++||+.++.           .......|...+  +++++ ++.+|+||+.||+|++|+..
T Consensus       299 ~~~-~~~~~~~~~~~-~~~i~v~d~~~~~-----------~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          299 VSC-GCSSEFVFVPY-GSTIAVYTVYSGE-----------QITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             ECC-SSSSCEEEEEE-TTEEEEEETTTCC-----------EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEC
T ss_pred             Eec-CCCceEEEEec-CCEEEEEECcCCc-----------ceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCC
Confidence            001 11222333333 6789999998872           122222333333  44555 78999999999999999975


Q ss_pred             C
Q 006424          640 G  640 (645)
Q Consensus       640 g  640 (645)
                      .
T Consensus       365 ~  365 (408)
T 4a11_B          365 L  365 (408)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=4.1e-29  Score=263.72  Aligned_cols=282  Identities=15%  Similarity=0.222  Sum_probs=224.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      ..+.|+||++ ++||+|. |++|+|||..++...                                           .+.
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------------------------------------~~~  141 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------------------------------------QLL  141 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------------------------------------EEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------------------------------------EEE
Confidence            4678999976 4777765 899999999884321                                           123


Q ss_pred             eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424          282 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  359 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  359 (645)
                      .+.+|...|++++|+|++ +|++|+.||+|++||+++++.+..+. |...+.++.+   ++.++++|+.|+.+++||...
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~---~~~~l~sgs~d~~i~~~d~~~  218 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRV  218 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTS
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee---CCCEEEEEeCCCceeEeeecc
Confidence            445788899999999997 99999999999999999999988885 8889998887   468999999999999999876


Q ss_pred             Cc--EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006424          360 KR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  437 (645)
Q Consensus       360 ~~--~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~  437 (645)
                      ..  ...+..|...+..+.++|+++++++++.||.+++|+...........   .....+...|.+++|+|.+..+++++
T Consensus       219 ~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~---~~~~~~~~~V~~~~~~p~~~~~la~~  295 (420)
T 4gga_A          219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL---QTFTQHQGAVKAVAWCPWQSNVLATG  295 (420)
T ss_dssp             SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS---EEECCCSSCEEEEEECTTCTTEEEEE
T ss_pred             cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee---eeecccCCceeeeeeCCCcccEEEEE
Confidence            43  44578899999999999999999999999999999998765432211   11223457899999999887787765


Q ss_pred             --ECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe--CCccEEEEeCCCCCcCCCcccCCcceeeeeecC
Q 006424          438 --SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE  513 (645)
Q Consensus       438 --s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  513 (645)
                        +.|+.|++||+.+........ +...+.++.|+|+++.+++++  .||.|+|||+.+++...          ..-.|.
T Consensus       296 ~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~----------~l~gH~  364 (420)
T 4gga_A          296 GGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA----------ELKGHT  364 (420)
T ss_dssp             ECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE----------EECCCS
T ss_pred             eecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE----------EEcCCC
Confidence              479999999988655444443 456899999999999998875  79999999998763211          112356


Q ss_pred             CcEEEEecCCCCccccccCCCCccccCcccccccc
Q 006424          514 GVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET  548 (645)
Q Consensus       514 g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~  548 (645)
                      +.+++++|+|+|.+|++.+.|+   .+++|+..+.
T Consensus       365 ~~V~~l~~spdg~~l~S~s~D~---tvriWdv~~~  396 (420)
T 4gga_A          365 SRVLSLTMSPDGATVASAAADE---TLRLWRCFEL  396 (420)
T ss_dssp             SCEEEEEECTTSSCEEEEETTT---EEEEECCSCS
T ss_pred             CCEEEEEEcCCCCEEEEEecCC---eEEEEECCCC
Confidence            7899999999999999888774   4678887543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.3e-29  Score=265.74  Aligned_cols=241  Identities=21%  Similarity=0.339  Sum_probs=203.2

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      |.+.|++++|+|++++|++|+.||.|++||+.+                                             .+
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~---------------------------------------------~~  167 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES---------------------------------------------QT  167 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTT---------------------------------------------CC
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcC---------------------------------------------Ce
Confidence            889999999999999999999999999999986                                             44


Q ss_pred             CceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecC-CCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424          279 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  356 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~-~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd  356 (645)
                      .+..+.+|...|.+++|++ ..+++|+.||.|++||++ .+..+..+ .|...|.+++|+| ++++|++|+.|+.|++||
T Consensus       168 ~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd  245 (401)
T 4aez_A          168 KLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWD  245 (401)
T ss_dssp             EEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred             EEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEcc
Confidence            5677889999999999953 589999999999999998 45555555 5899999999999 999999999999999999


Q ss_pred             CCCCcEEE-eeccCCCeEEEEEccCCC-EEEEEe--cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424          357 VCEKRVVD-WADVRDVISAICYIPDGK-GFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       357 ~~~~~~~~-~~~~~~~v~~l~~sp~g~-~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                      +++++... +..|...|.+++|+|++. ++++++  .||.|++||+.+...... +.       +...+.+++|+|++ .
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~-~~-------~~~~v~~~~~s~~~-~  316 (401)
T 4aez_A          246 ARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT-VD-------AGSQVTSLIWSPHS-K  316 (401)
T ss_dssp             TTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE-EE-------CSSCEEEEEECSSS-S
T ss_pred             CCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE-Ee-------CCCcEEEEEECCCC-C
Confidence            99877654 567899999999999775 555554  799999999987765332 21       13679999999998 6


Q ss_pred             EEEEE--ECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424          433 RIMIT--SEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  495 (645)
Q Consensus       433 ~l~~~--s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~  495 (645)
                      +++++  +.||.|++||+..  .........|...|.+++|+|++++|++++.||.|++|++.+++.
T Consensus       317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred             eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence            77774  4899999999875  444444556889999999999999999999999999999988753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=5e-30  Score=271.55  Aligned_cols=258  Identities=21%  Similarity=0.291  Sum_probs=210.7

Q ss_pred             ccccccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          195 EIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      .+.+|.+.|++++|+|+ +.+||+|+.||.|++||+.+......                                   .
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------------------------~  167 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------------------------P  167 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------------T
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------------------------c
Confidence            35579999999999997 77999999999999999975211000                                   0


Q ss_pred             eccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeE-------EEEe-cCCCcEEEEEEeeCCCCEE
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC-------LNVF-DHHNYVTCVQFNPIDDNYF  343 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~-------~~~~-~~~~~v~~l~~~p~~~~~l  343 (645)
                      .....++..+.+|...|.+++|+|++  +|++|+.||.|++||+.++..       ...+ .|...|.+++|+|.++.+|
T Consensus       168 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l  247 (430)
T 2xyi_A          168 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF  247 (430)
T ss_dssp             TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE
T ss_pred             cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE
Confidence            00135567888999999999999874  899999999999999987322       2333 5888999999999778899


Q ss_pred             EEEeCCCcEEEEeCCCC----cEEEeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccccCC
Q 006424          344 ISGSIDGKVRIWGVCEK----RVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG  418 (645)
Q Consensus       344 ~s~s~dg~i~vwd~~~~----~~~~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  418 (645)
                      ++++.||.|++||++++    ....+..|...|++++|+|++. ++++|+.||.|++||++........+..      |.
T Consensus       248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~------h~  321 (430)
T 2xyi_A          248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES------HK  321 (430)
T ss_dssp             EEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC------CS
T ss_pred             EEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec------CC
Confidence            99999999999999976    3445668899999999999987 6889999999999999975544433332      34


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--------------ceeeEeecCCCCCeEEEEEecCCC-EEEEEeCCc
Q 006424          419 NKITGIQFSRDESQRIMITSEDSKLRILDGVD--------------VIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDC  483 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--------------~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s~dg  483 (645)
                      ..|++++|+|++..++++++.|+.|++||+..              ....+....|...|.+++|+|+++ +|++++.||
T Consensus       322 ~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg  401 (430)
T 2xyi_A          322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN  401 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence            78999999999867899999999999999875              233344455788999999999999 999999999


Q ss_pred             cEEEEeCCCC
Q 006424          484 RVYVWNYDEL  493 (645)
Q Consensus       484 ~I~iwd~~~~  493 (645)
                      .|+||++...
T Consensus       402 ~i~iw~~~~~  411 (430)
T 2xyi_A          402 IMQVWQMAEN  411 (430)
T ss_dssp             EEEEEEECHH
T ss_pred             CEEEeEcccc
Confidence            9999999764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=2e-30  Score=272.09  Aligned_cols=255  Identities=18%  Similarity=0.279  Sum_probs=212.1

Q ss_pred             cccccccccCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          192 TSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      ....+.+|.+.|++++|+| ++++|++|+.||+|++||+.++....                                  
T Consensus        73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~----------------------------------  118 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL----------------------------------  118 (402)
T ss_dssp             TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS----------------------------------
T ss_pred             CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc----------------------------------
Confidence            3445789999999999999 89999999999999999998732110                                  


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe--c-CCCcEEEEEEeeCCCCEEEE
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF--D-HHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~--~-~~~~v~~l~~~p~~~~~l~s  345 (645)
                          ....++..+.+|...|.+++|+|++  +|++++.|+.|++||+++++.+..+  . |...|.+++|+| ++++|++
T Consensus       119 ----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  193 (402)
T 2aq5_A          119 ----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICT  193 (402)
T ss_dssp             ----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEE
T ss_pred             ----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEE
Confidence                0125577888999999999999985  8999999999999999999998887  3 889999999999 9999999


Q ss_pred             EeCCCcEEEEeCCCCcEEEe--eccCCC-eEEEEEccCCCEEEEE---ecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424          346 GSIDGKVRIWGVCEKRVVDW--ADVRDV-ISAICYIPDGKGFIVG---SITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  419 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~~~~~--~~~~~~-v~~l~~sp~g~~l~~g---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  419 (645)
                      ++.|+.|++||+++++....  ..|... +.++.|+|+++++++|   +.|+.|++||+++...........     +..
T Consensus       194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~  268 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-----TSS  268 (402)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC-----CCS
T ss_pred             EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc-----CCC
Confidence            99999999999999887664  466655 8999999999999999   789999999998766543333222     236


Q ss_pred             CeEEEEEcCCCCcEEE-EEECCCeEEEEECCcc---eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          420 KITGIQFSRDESQRIM-ITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       420 ~i~~i~~s~~g~~~l~-~~s~dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .+.+++|+|++ .+++ +++.|+.|++||+...   ...+..+.+...+.+++|+|++.++++  .++.+++|++.++
T Consensus       269 ~v~~~~~s~~~-~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          269 GVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             SCEEEEEETTT-TEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred             ceeEEEEcCCC-CEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence            79999999998 5564 5668999999998743   445555557789999999999998875  5779999999865

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=2.6e-29  Score=267.38  Aligned_cols=275  Identities=19%  Similarity=0.324  Sum_probs=223.2

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ...++.+|.+.|++++|+  +++|++|+.||+|++||+.+                                        
T Consensus       151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~----------------------------------------  188 (445)
T 2ovr_B          151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET----------------------------------------  188 (445)
T ss_dssp             EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT----------------------------------------
T ss_pred             EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc----------------------------------------
Confidence            345677999999999997  56999999999999999987                                        


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                           ++.+..+.+|...|.+++|++ +.+++|+.||+|++||+.+++.+..+. |...|.+++|   +++++++|+.||
T Consensus       189 -----~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg  259 (445)
T 2ovr_B          189 -----GECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDF  259 (445)
T ss_dssp             -----TEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---CSSCEEEEETTS
T ss_pred             -----CcEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---CCCEEEEEcCCC
Confidence                 344677889999999999963 579999999999999999999888774 8889999998   578999999999


Q ss_pred             cEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          351 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       351 ~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      .|++||+++++... +..|...|.+++|  ++.++++|+.||.|++||+++......   +.    .|...+.++.++  
T Consensus       260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~----~~~~~v~~~~~~--  328 (445)
T 2ovr_B          260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT---LT----GHQSLTSGMELK--  328 (445)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE---EC----CCCSCEEEEEEE--
T ss_pred             EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE---Ec----CCcccEEEEEEe--
Confidence            99999999887665 5678899999999  789999999999999999988765322   12    234678888775  


Q ss_pred             CCcEEEEEECCCeEEEEECCcceeeEeec---CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcce
Q 006424          430 ESQRIMITSEDSKLRILDGVDVIHKFKGL---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRS  506 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~---~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~  506 (645)
                      + .++++++.||.|++||+.+........   .|...|.+++|+  +++|++|+.||.|++||+.+++.......     
T Consensus       329 ~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----  400 (445)
T 2ovr_B          329 D-NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT-----  400 (445)
T ss_dssp             T-TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE-----
T ss_pred             C-CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeec-----
Confidence            3 589999999999999987544333332   277899999995  68999999999999999988742211100     


Q ss_pred             eeeeecCCcEEEEecCCCCccccccCCCCc
Q 006424          507 CEHFFSEGVSVAVQWPGIGTEQKSLCSSSL  536 (645)
Q Consensus       507 ~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~  536 (645)
                      ...-.+.+.+.+++|+|++..++..+.|+.
T Consensus       401 ~~~~~~~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          401 LESGGSGGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             CTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             cccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence            000135678999999999999998877764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.5e-29  Score=265.49  Aligned_cols=275  Identities=15%  Similarity=0.186  Sum_probs=215.5

Q ss_pred             cEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          202 CIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       202 ~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      ....++++|+.. ++++|+.||.|+||++......                                         ...+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------------------------~~~~   74 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----------------------------------------DKNV   74 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------------------------CTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------------------------CCCC
Confidence            455688999876 4456889999999998652110                                         1345


Q ss_pred             eeeccCccCeEEEEEcC-CC-eEEEEeCCCcEEEEecCCC-------eEEEEe-cCCCcEEEEEEeeCCC-CEEEEEeCC
Q 006424          281 QELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCN-------QCLNVF-DHHNYVTCVQFNPIDD-NYFISGSID  349 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~-~~-~l~s~s~dg~I~iwd~~~~-------~~~~~~-~~~~~v~~l~~~p~~~-~~l~s~s~d  349 (645)
                      ..+.+|.+.|++++|+| ++ +|++|+.||+|++||+.++       +++..+ .|...|.+++|+| ++ ++|++++.|
T Consensus        75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~d  153 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCD  153 (402)
T ss_dssp             CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETT
T ss_pred             ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCC
Confidence            56789999999999999 66 9999999999999999887       445555 4999999999999 65 799999999


Q ss_pred             CcEEEEeCCCCcEEE-e--eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424          350 GKVRIWGVCEKRVVD-W--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       350 g~i~vwd~~~~~~~~-~--~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                      +.|++||+++++... +  ..|...|.+++|+|++++|++++.||.|++||+++..........+.     ...+.++.|
T Consensus       154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~  228 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE-----GTRPVHAVF  228 (402)
T ss_dssp             SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSC-----SSSCCEEEE
T ss_pred             CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCC-----CCcceEEEE
Confidence            999999999988765 4  56899999999999999999999999999999998764332111111     234899999


Q ss_pred             cCCCCcEEEEE---ECCCeEEEEECCccee--eEeecCCCCCeEEEEEecCCCEEEE-EeCCccEEEEeCCCCCcCCCcc
Q 006424          427 SRDESQRIMIT---SEDSKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDELCFPSSKQ  500 (645)
Q Consensus       427 s~~g~~~l~~~---s~dg~I~iwd~~~~~~--~~~~~~~~~~i~~v~~sp~~~~l~t-~s~dg~I~iwd~~~~~~~~~~~  500 (645)
                      +|++ .+++++   +.|+.|++||++....  ......+...+.+++|+|++++|++ |+.||.|++||+.++...    
T Consensus       229 ~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~----  303 (402)
T 2aq5_A          229 VSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF----  303 (402)
T ss_dssp             CSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC----
T ss_pred             cCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc----
Confidence            9997 788888   7899999999875322  2222346778999999999999975 557999999999876321    


Q ss_pred             cCCcceeeeeecCCcEEEEecCCCCcccccc
Q 006424          501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL  531 (645)
Q Consensus       501 ~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~  531 (645)
                         ......+.+.+.+..++|+|++..+++.
T Consensus       304 ---~~~l~~~~~~~~v~~~~~sp~~~~~~s~  331 (402)
T 2aq5_A          304 ---LHYLSMFSSKESQRGMGYMPKRGLEVNK  331 (402)
T ss_dssp             ---EEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred             ---eEeecccccCCcccceEEecccccceec
Confidence               1122223345778899999999988753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=2.5e-29  Score=265.35  Aligned_cols=244  Identities=17%  Similarity=0.309  Sum_probs=203.6

Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      .+.+|.+.|++++|+|+|++||+|+.||+|++||+.+                                           
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~-------------------------------------------  178 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-------------------------------------------  178 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------------------------------
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC-------------------------------------------
Confidence            3567889999999999999999999999999999987                                           


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCe-EEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV  352 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~-~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i  352 (645)
                        ++.+..+.+|...+.++++++ ..|++|+.|+.+++||..... .+..+ .|...+.++.|+| ++.++++++.|+.+
T Consensus       179 --~~~~~~~~~h~~~v~~~s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v  254 (420)
T 4gga_A          179 --QKRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLV  254 (420)
T ss_dssp             --TEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             --CcEEEEEeCCCCceEEEeeCC-CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccc
Confidence              455678889999999999863 489999999999999987643 34444 5889999999999 99999999999999


Q ss_pred             EEEeCCCCc-----EEEeeccCCCeEEEEEccCCC-EEEEE--ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424          353 RIWGVCEKR-----VVDWADVRDVISAICYIPDGK-GFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       353 ~vwd~~~~~-----~~~~~~~~~~v~~l~~sp~g~-~l~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                      ++||...++     ......+...|.+++|+|.+. .++++  +.|+.|++||+.+...... +  ..     ...+.++
T Consensus       255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~-~--~~-----~~~v~~~  326 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-V--DA-----HSQVCSI  326 (420)
T ss_dssp             EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE-E--EC-----SSCEEEE
T ss_pred             eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee-e--cc-----ccceeee
Confidence            999998754     345677889999999999665 55543  5799999999998765332 2  21     2678999


Q ss_pred             EEcCCCCcEEEEEE--CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          425 QFSRDESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       425 ~~s~~g~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      .|+|++ ..+++++  .|+.|+|||..+.........|.+.|++++|+|+|++|+||+.||+|+|||+.+..
T Consensus       327 ~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          327 LWSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             EEETTT-TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             eecCCC-CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            999998 5666554  68999999988665555555689999999999999999999999999999997653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=4.3e-30  Score=262.80  Aligned_cols=291  Identities=13%  Similarity=0.081  Sum_probs=223.6

Q ss_pred             eccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe----EEEEecCCCcEEEEEEeeCCCC-EEEEEeCCCcEEEEe
Q 006424          283 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDN-YFISGSIDGKVRIWG  356 (645)
Q Consensus       283 l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~----~~~~~~~~~~v~~l~~~p~~~~-~l~s~s~dg~i~vwd  356 (645)
                      ..+|.+.|++++|+|++ +|++++.|+.|++||+.++.    ......|...|.+++|+| +++ +|++|+.||.|++||
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEEC
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEE
Confidence            45799999999999987 89999999999999998877    555667999999999999 899 999999999999999


Q ss_pred             C-CCCcEEEeec--cCCCeEEEEEccCCCEEEEEecCCeEEEEEecC---------CceeeeEEeeccccccCCCCeEEE
Q 006424          357 V-CEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASG---------NDLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       357 ~-~~~~~~~~~~--~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                      + .+++...+..  |...|.+++|+| ++.+++++.||.|++||++.         .....        ...+...+.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~  156 (342)
T 1yfq_A           86 LIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN--------NTKVKNKIFTM  156 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--------SSSSCCCEEEE
T ss_pred             eccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee--------EEeeCCceEEE
Confidence            9 9998888888  999999999999 99999999999999999985         22211        11145789999


Q ss_pred             EEcCCCCcEEEEEECCCeEEEEECCc-ce--eeEeecCCCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424          425 QFSRDESQRIMITSEDSKLRILDGVD-VI--HKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQ  500 (645)
Q Consensus       425 ~~s~~g~~~l~~~s~dg~I~iwd~~~-~~--~~~~~~~~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~~~~~~~~  500 (645)
                      +|+|++   +++++.|+.|++||++. ..  .......+...+.+++|+| +++++++++.||.|++|+++........ 
T Consensus       157 ~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-  232 (342)
T 1yfq_A          157 DTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS-  232 (342)
T ss_dssp             EECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC-
T ss_pred             EecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc-
Confidence            999884   99999999999999876 32  2333445788999999999 9999999999999999999765100000 


Q ss_pred             cCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCc
Q 006424          501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK  580 (645)
Q Consensus       501 ~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~  580 (645)
                       . ...  .+..         .....                        .-..+...+.+++|+|+++++++++. ++.
T Consensus       233 -~-~~~--~~~~---------~~~~~------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~  274 (342)
T 1yfq_A          233 -S-KRF--AFRC---------HRLNL------------------------KDTNLAYPVNSIEFSPRHKFLYTAGS-DGI  274 (342)
T ss_dssp             -T-TCE--EEEC---------CCCCT------------------------TCCSSCCCEEEEEECTTTCCEEEEET-TSC
T ss_pred             -c-cce--eeec---------ccccc------------------------cccccceeEEEEEEcCCCCEEEEecC-Cce
Confidence             0 000  0000         00000                        00123445677788888888888887 899


Q ss_pred             CCCCCCccCCCCCcCChhhhHhhhhhccC-CCCCccCCCCcceEEEEecCCCe-EeEEE
Q 006424          581 LPLWDVTIDSDGYCQDPQQQRLQQQCLNN-VDDVRAISATWGLVIVTAGCDGM-IKTFH  637 (645)
Q Consensus       581 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~ivt~s~Dg~-Iriw~  637 (645)
                      |++||+.+++           .......+ ...+..+. +||.+|++||.||+ .+.|.
T Consensus       275 i~vwd~~~~~-----------~~~~~~~~h~~~v~~~~-~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          275 ISCWNLQTRK-----------KIKNFAKFNEDSVVKIA-CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEETTTTE-----------EEEECCCCSSSEEEEEE-ECSSEEEEEEECTHHHHCSS
T ss_pred             EEEEcCccHh-----------HhhhhhcccCCCceEec-CCCCeEEEEecCCccccccc
Confidence            9999998872           22223333 44444555 78999999999999 55544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.4e-30  Score=277.22  Aligned_cols=257  Identities=13%  Similarity=0.101  Sum_probs=199.7

Q ss_pred             cccccccCcEEEEEECCC------CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424          194 QEIQAHKGCIWTLKFSPD------GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  267 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspd------g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (645)
                      .++.+|.+.|++++|+|+      +.+||+|+.||+|++||+.++.......                            
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~----------------------------  252 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF----------------------------  252 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE----------------------------
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc----------------------------
Confidence            456788999999999997      5799999999999999997642110000                            


Q ss_pred             cCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCe-EEEEe-cCCCcEEEE--EEeeCCC-CE
Q 006424          268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCV--QFNPIDD-NY  342 (645)
Q Consensus       268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~-~~~~~-~~~~~v~~l--~~~p~~~-~~  342 (645)
                            .....+...+.+|...|++++|++++.|++|+.||+|++||++++. +...+ .|...|+++  .|+| ++ ++
T Consensus       253 ------~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~  325 (524)
T 2j04_B          253 ------KMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTV  325 (524)
T ss_dssp             ------ECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCE
T ss_pred             ------eeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeE
Confidence                  0012345678899999999999988899999999999999998764 33434 599999999  4666 76 89


Q ss_pred             EEEEeCCCcEEEEeCCCCcEEE-eeccC--CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424          343 FISGSIDGKVRIWGVCEKRVVD-WADVR--DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  419 (645)
Q Consensus       343 l~s~s~dg~i~vwd~~~~~~~~-~~~~~--~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  419 (645)
                      |++|+.|++|++||+++++... +.+|.  ..|.+++|+|+++.+++++.|++|++||++.......   +.    .|..
T Consensus       326 laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~---l~----gH~~  398 (524)
T 2j04_B          326 VSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP---LV----SRET  398 (524)
T ss_dssp             EEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE---EE----ECSS
T ss_pred             EEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee---ee----cCCC
Confidence            9999999999999998866432 33443  3588999999999999999999999999988664322   12    2458


Q ss_pred             CeEEEEEcCCCCcEEEEEECCCeEEEEECCc----c-e---------ee------------------------------E
Q 006424          420 KITGIQFSRDESQRIMITSEDSKLRILDGVD----V-I---------HK------------------------------F  455 (645)
Q Consensus       420 ~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~----~-~---------~~------------------------------~  455 (645)
                      .|++++|+|+| .+|++|+.|++|++||...    . .         ..                              .
T Consensus       399 ~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~  477 (524)
T 2j04_B          399 TITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKA  477 (524)
T ss_dssp             CEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC---------
T ss_pred             ceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCccee
Confidence            99999999998 7899999999999998421    0 0         00                              0


Q ss_pred             eecCCCCCeEEEEEecCCC---EEEEEeCCccEEEEeCCCC
Q 006424          456 KGLPKSGSQMSASFTTTGK---HIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       456 ~~~~~~~~i~~v~~sp~~~---~l~t~s~dg~I~iwd~~~~  493 (645)
                      ....|...|.+++|+|+++   .+|+|+.||.|+||++...
T Consensus       478 ~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          478 KIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             ----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             eecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence            1123667889999999964   9999999999999998754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.6e-29  Score=258.39  Aligned_cols=298  Identities=14%  Similarity=0.135  Sum_probs=211.0

Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC----eEEEEe-cCCCcEEEEEEeeC-CCCEEEEEeCCCcEE
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN----QCLNVF-DHHNYVTCVQFNPI-DDNYFISGSIDGKVR  353 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~----~~~~~~-~~~~~v~~l~~~p~-~~~~l~s~s~dg~i~  353 (645)
                      ..+.+|.+.|++++|+|++ +|++|+.||.|++||+.++    +....+ .|...|.+++|+|. ++++|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            4567999999999999987 8999999999999999876    344444 48999999999984 389999999999999


Q ss_pred             EEeCCCCc----------EEEeeccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeeeE------Eeeccccc
Q 006424          354 IWGVCEKR----------VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEK------VDFHDRKK  415 (645)
Q Consensus       354 vwd~~~~~----------~~~~~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~~------~~~~~~~~  415 (645)
                      +||++++.          ...+..|...|.+++|+|+  ++++++++.||.|++||+++.......      ........
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            99998752          4456789999999999999  999999999999999999876543210      00111122


Q ss_pred             cCCCCeEEEEEcCC--CCcEEEEEECCCeEEEEECCcce--eeEeecCCCCCeEEEEEecCC----CEEEEEeCCccEEE
Q 006424          416 TSGNKITGIQFSRD--ESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTG----KHIISIGDDCRVYV  487 (645)
Q Consensus       416 ~~~~~i~~i~~s~~--g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~i~~v~~sp~~----~~l~t~s~dg~I~i  487 (645)
                      .+...+.++.|+|+  ...++++++.|+.+.+|+.....  .......|...|.+++|+|++    ++|++|+.||.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            45678999999997  23799999999999888865432  234445588999999999998    89999999999999


Q ss_pred             EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccC-CCCccccCcccccc--ccCCccCCCCccccCccc
Q 006424          488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLC-SSSLRDCSQKWDNL--ETAPWIRDSERFSLGSWF  564 (645)
Q Consensus       488 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~-~~~~~~~~~~w~~~--~~~~~~~~~~~~~~~~~f  564 (645)
                      ||+..+..........          ........++....+.... ..........|...  ........|...+++++|
T Consensus       245 wd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  314 (351)
T 3f3f_A          245 FKITEKLSPLASEESL----------TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW  314 (351)
T ss_dssp             EEEEECC-------------------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred             EeCCCCcCccccCCcc----------cceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence            9998764322211110          0111111122222111111 11111122233321  122245567788999999


Q ss_pred             cCCCCCCcCCCCCCCcCCCCCCccC
Q 006424          565 SNDGPCRGSATWPAEKLPLWDVTID  589 (645)
Q Consensus       565 s~dg~~l~s~s~~d~~i~iWd~~~~  589 (645)
                      +|+++++++++. |+.|++|++.++
T Consensus       315 s~~~~~l~s~~~-dg~v~iw~~~~~  338 (351)
T 3f3f_A          315 NLTGTILSSAGD-DGKVRLWKATYS  338 (351)
T ss_dssp             CSSSCCEEEEET-TSCEEEEEECTT
T ss_pred             cCCCCEEEEecC-CCcEEEEecCcC
Confidence            999999999998 999999999876

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=1.4e-29  Score=256.55  Aligned_cols=252  Identities=17%  Similarity=0.210  Sum_probs=192.4

Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeE--EEEe-cCCCcEEEEEEee-CCCCEEEEEeCCCcEEEE
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC--LNVF-DHHNYVTCVQFNP-IDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~--~~~~-~~~~~v~~l~~~p-~~~~~l~s~s~dg~i~vw  355 (645)
                      ..+.+|.+.|++++|+|++ +|++|+.|++|++||+.++..  +..+ +|...|.+++|+| .++++|++|+.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3456899999999999987 899999999999999988753  4444 5999999999975 247899999999999999


Q ss_pred             eCCCCc---EEEeeccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          356 GVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       356 d~~~~~---~~~~~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      |++++.   ...+.+|...|.+++|+|+  +.+|++|+.||.|++||++......    .......|...+.+++|+|++
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE----VKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE----ECCBTTSSSSCBCCCEECCCC
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc----eeeeeccccCCcceEEEcccc
Confidence            998863   3446789999999999998  7899999999999999998653211    111223456789999999973


Q ss_pred             ----------------CcEEEEEECCCeEEEEECCcc---eeeEeecCCCCCeEEEEEecCC----CEEEEEeCCccEEE
Q 006424          431 ----------------SQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTG----KHIISIGDDCRVYV  487 (645)
Q Consensus       431 ----------------~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp~~----~~l~t~s~dg~I~i  487 (645)
                                      ..+|++++.|+.|++||....   ........|...|.+++|+|++    ++|++|+.||+|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence                            158999999999999998632   2223334588999999999987    89999999999999


Q ss_pred             EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424          488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  545 (645)
Q Consensus       488 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~  545 (645)
                      |++.+......     .... ...+.+.+.+++|+|++..|++.+.|+   .+++|+.
T Consensus       243 w~~~~~~~~~~-----~~~~-~~~~~~~v~~v~~sp~g~~las~~~D~---~v~lw~~  291 (316)
T 3bg1_A          243 WTCDDASSNTW-----SPKL-LHKFNDVVWHVSWSITANILAVSGGDN---KVTLWKE  291 (316)
T ss_dssp             EECSSTTCCCC-----BCCE-EEECSSCEEEEEECTTTCCEEEEESSS---CEEEEEE
T ss_pred             EEccCccccch-----hhhh-hhcCCCcEEEEEEcCCCCEEEEEcCCC---eEEEEEE
Confidence            99976321000     0011 112467789999999999999887764   4567765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.1e-29  Score=257.74  Aligned_cols=253  Identities=17%  Similarity=0.197  Sum_probs=200.5

Q ss_pred             CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC--CCeEEEEec-CCCcEEEEEEeeCC--CCEEEEEeCCCcE
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFD-HHNYVTCVQFNPID--DNYFISGSIDGKV  352 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~--~~~~~~~~~-~~~~v~~l~~~p~~--~~~l~s~s~dg~i  352 (645)
                      ++..+.+|.+.|++++|+|++ +|++|+.||.|++||+.  +++.+..+. |...|++++|+| +  +++|++++.||.|
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKV   81 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEE
Confidence            456788999999999999997 89999999999999998  555666664 899999999987 5  8999999999999


Q ss_pred             EEEeCCCCc---EEEeeccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424          353 RIWGVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  427 (645)
Q Consensus       353 ~vwd~~~~~---~~~~~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s  427 (645)
                      ++||+.+++   ......|...|.+++|+|+  ++++++++.||.|++||++........ ...    .|...|.+++|+
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~----~~~~~v~~~~~~  156 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IID----AHAIGVNSASWA  156 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE-EEE----CCTTCEEEEEEC
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE-Eec----CCCCceEEEEEc
Confidence            999999885   3446678999999999999  999999999999999999877443221 122    235789999999


Q ss_pred             C-------------CCCcEEEEEECCCeEEEEECCcce----eeEeecCCCCCeEEEEEecC---CCEEEEEeCCccEEE
Q 006424          428 R-------------DESQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTT---GKHIISIGDDCRVYV  487 (645)
Q Consensus       428 ~-------------~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~~~~~i~~v~~sp~---~~~l~t~s~dg~I~i  487 (645)
                      |             ++ .++++++.|+.|++||++...    .......|...|.+++|+|+   +++|++++.||.|++
T Consensus       157 ~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i  235 (379)
T 3jrp_A          157 PATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII  235 (379)
T ss_dssp             CCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             CccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence            9             45 899999999999999976322    22233458899999999999   899999999999999


Q ss_pred             EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCcccccc
Q 006424          488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL  546 (645)
Q Consensus       488 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~  546 (645)
                      ||+.++........     .....+.+.+..++|+|++..|++.+.++   .+.+|+..
T Consensus       236 wd~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~i~iw~~~  286 (379)
T 3jrp_A          236 WTQDNEQGPWKKTL-----LKEEKFPDVLWRASWSLSGNVLALSGGDN---KVTLWKEN  286 (379)
T ss_dssp             EEESSTTSCCEEEE-----SSSSCCSSCEEEEEECSSSCCEEEEESSS---SEEEEEEE
T ss_pred             EeCCCCCccceeee-----eccccCCCcEEEEEEcCCCCEEEEecCCC---cEEEEeCC
Confidence            99987632211100     00112456788999999999988777653   35667653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=5.6e-29  Score=256.30  Aligned_cols=244  Identities=11%  Similarity=0.109  Sum_probs=178.3

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      .+++++|.+.|++++|+|||++|++|+.|| +++|++.++..                                      
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~--------------------------------------   52 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH--------------------------------------   52 (355)
T ss_dssp             -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE--------------------------------------
T ss_pred             ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce--------------------------------------
Confidence            445688999999999999999999999886 78999876211                                      


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCC-e-EEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                             ....  +...+..+++.+++ . +++++.|++|++||+.+++++..+.+...|.+++|++ +  .++++. |+
T Consensus        53 -------~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~-~--~~~~~~-~~  119 (355)
T 3vu4_A           53 -------IMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSR-E--FIVVSY-GD  119 (355)
T ss_dssp             -------EEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECS-S--EEEEEE-TT
T ss_pred             -------eeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcC-C--EEEEEE-cC
Confidence                   1111  12246777777664 4 4678888999999999999999999999999999976 3  455444 78


Q ss_pred             cEEEEeCCCC-cEEEeeccCCCeEEEEEccCCCEEEE--EecCCeEEEEEecCCceeee--------EEee-ccccccCC
Q 006424          351 KVRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIV--GSITGTCHFYKASGNDLKLE--------KVDF-HDRKKTSG  418 (645)
Q Consensus       351 ~i~vwd~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~~--g~~dg~i~iwd~~~~~~~~~--------~~~~-~~~~~~~~  418 (645)
                      .|++||+.++ +.+.....  ....+++++  .++++  |+.+|.|++||+.+......        .... ......|.
T Consensus       120 ~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~  195 (355)
T 3vu4_A          120 VISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT  195 (355)
T ss_dssp             EEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCS
T ss_pred             EEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC
Confidence            9999999887 44332222  444566677  56666  58899999999987541100        0000 11123456


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCe-EEEEECCcceeeEeec-C-CCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          419 NKITGIQFSRDESQRIMITSEDSK-LRILDGVDVIHKFKGL-P-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg~-I~iwd~~~~~~~~~~~-~-~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ..|++++|+|+| .+|++++.|++ |++||+.+........ . |...|.+++|+|++++|++++.|++|++||+...
T Consensus       196 ~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          196 NPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             CceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            899999999998 89999999998 9999988554444433 2 8899999999999999999999999999999876

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=8.8e-28  Score=242.82  Aligned_cols=242  Identities=17%  Similarity=0.297  Sum_probs=199.7

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      +.+|...|++++|+|++++|++|+.||+|++||+.+                                            
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~--------------------------------------------   98 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--------------------------------------------   98 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT--------------------------------------------
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC--------------------------------------------
Confidence            567899999999999999999999999999999987                                            


Q ss_pred             cCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeE-EEE-ecCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC-LNV-FDHHNYVTCVQFNPIDDNYFISGSIDGKVR  353 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~-~~~-~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~  353 (645)
                       ++.+..+.+|...+.++.+.+ ..+++++.++.+++|+...+.. +.. ..|...+.++.+.+ +++++++++.|+.|+
T Consensus        99 -~~~~~~~~~h~~~~~~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~  175 (318)
T 4ggc_A           99 -QKRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVN  175 (318)
T ss_dssp             -TEEEEEEECCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred             -ceeEEEecCccceEEEeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCccee
Confidence             455677889999998877653 4899999999999999876543 333 35889999999999 999999999999999


Q ss_pred             EEeCCCCc-----EEEeeccCCCeEEEEEccCCCEE---EEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          354 IWGVCEKR-----VVDWADVRDVISAICYIPDGKGF---IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       354 vwd~~~~~-----~~~~~~~~~~v~~l~~sp~g~~l---~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      +||+++++     ......+...|.++.++|++..+   ++++.++.|++||.........   ..     +...+..+.
T Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~---~~-----~~~~v~~~~  247 (318)
T 4ggc_A          176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA---VD-----AHSQVCSIL  247 (318)
T ss_dssp             EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE---EE-----CSSCEEEEE
T ss_pred             EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc---cc-----ceeeeeeee
Confidence            99998765     23456678889999999976643   3566789999999987665332   11     136799999


Q ss_pred             EcCCCCcEEEEEE--CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          426 FSRDESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       426 ~s~~g~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      |+|++ ..+++++  .|+.|++||+.+.........|.+.|++++|+|++++|+|||.||+|+|||+.+.
T Consensus       248 ~~~~~-~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          248 WSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EETTT-TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             ecccc-cceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            99997 5555543  7999999998865555555568999999999999999999999999999999765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.2e-28  Score=256.18  Aligned_cols=310  Identities=10%  Similarity=-0.017  Sum_probs=211.1

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCc---eeeeEecCCCCcccC----CCCceEEecccCC--Cccee----e
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA---ASCKSFTDDGGFGSN----AKEGKIKFGKKKS--SHVPV----V  267 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~----~  267 (645)
                      .++.+++|+|+|++|+++ .++.|++||+.++.   ...............    .............  .....    .
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            478999999999976665 57789999999887   333222111100000    0000000000000  00000    0


Q ss_pred             cCCCceeccCCCceeeccCccCeEEEEEcCCC-eE-EEEeCCCcEEEEecC--CCeEEEEe---cCCCcEEEEEEeeCCC
Q 006424          268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVG--CNQCLNVF---DHHNYVTCVQFNPIDD  340 (645)
Q Consensus       268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l-~s~s~dg~I~iwd~~--~~~~~~~~---~~~~~v~~l~~~p~~~  340 (645)
                      ........ ..+.....+|.+.|++++|+|++ +| ++++.||.|++||+.  +++.+..+   .+...|.+++|+| ++
T Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~  161 (450)
T 2vdu_B           84 IKRTAAKV-PSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DD  161 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TS
T ss_pred             ccccCccc-cCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CC
Confidence            00000000 01122345788899999999998 64 899999999999999  88877776   4778999999999 99


Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEE-----EeeccCCCeEEEEEccC---CCEEEEEecCCeEEEEEecCCceeeeEEeecc
Q 006424          341 NYFISGSIDGKVRIWGVCEKRVV-----DWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHD  412 (645)
Q Consensus       341 ~~l~s~s~dg~i~vwd~~~~~~~-----~~~~~~~~v~~l~~sp~---g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  412 (645)
                      ++|++|+.||.|++|++.++...     .+.+|...|++++|+|+   +++|++|+.|+.|++||+.+.......     
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-----  236 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW-----  236 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE-----
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee-----
Confidence            99999999999999999876644     46778999999999999   999999999999999999877643221     


Q ss_pred             ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--eeEeec-----------------------CCCCCeEEE
Q 006424          413 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGL-----------------------PKSGSQMSA  467 (645)
Q Consensus       413 ~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~-----------------------~~~~~i~~v  467 (645)
                       ...|...|.+++|+ ++ .+|++++.|+.|++||+....  ..+...                       .....|.++
T Consensus       237 -~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  313 (450)
T 2vdu_B          237 -LFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI  313 (450)
T ss_dssp             -CCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred             -ecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence             12245889999999 86 899999999999999987433  333321                       234578999


Q ss_pred             EEecCCCEEEEEe-CCccEEEEeC--CCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcccc
Q 006424          468 SFTTTGKHIISIG-DDCRVYVWNY--DELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK  529 (645)
Q Consensus       468 ~~sp~~~~l~t~s-~dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~  529 (645)
                      +|+|++++|++++ .|+.|++|++  ..+..        ......+...+.+..++|+|++.+++
T Consensus       314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~--------l~~~~~~~~~~~v~~~~~~~~~~~v~  370 (450)
T 2vdu_B          314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGD--------LALKQIITFPYNVISLSAHNDEFQVT  370 (450)
T ss_dssp             EECSSSSEEEEEETTCSEEEEEEECSSSTTC--------EEEEEEEECSSCEEEEEEETTEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEeccCCCCc--------eeeccEeccCCceEEEEecCCcEEEE
Confidence            9999999999999 8999999999  32210        01111222236788899999654444

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=5.1e-28  Score=257.20  Aligned_cols=291  Identities=14%  Similarity=0.194  Sum_probs=204.3

Q ss_pred             cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe-----------EEEEe-cCC------------CcEEEEEEeeCC
Q 006424          285 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-----------CLNVF-DHH------------NYVTCVQFNPID  339 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~-----------~~~~~-~~~------------~~v~~l~~~p~~  339 (645)
                      .|.+.|++++|+|++ +|++|+.||.|++||+.+++           ....+ .|.            ..|.+++|+| +
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~  104 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-Q  104 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-C
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-C
Confidence            368899999999997 99999999999999998776           34444 476            7899999999 7


Q ss_pred             C--CEEEEEeCCCcEEEEeCCCCcEE-----------------------------------------EeeccCCCeEEEE
Q 006424          340 D--NYFISGSIDGKVRIWGVCEKRVV-----------------------------------------DWADVRDVISAIC  376 (645)
Q Consensus       340 ~--~~l~s~s~dg~i~vwd~~~~~~~-----------------------------------------~~~~~~~~v~~l~  376 (645)
                      +  .+|++++.|+.|++||+.++...                                         ...+|...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            6  79999999999999998764431                                         1357899999999


Q ss_pred             EccCCCEEEEEecCCeEEEEEecCCceeeeEEeec-cccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce---
Q 006424          377 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH-DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI---  452 (645)
Q Consensus       377 ~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~---  452 (645)
                      |+|++++|++| .||.|++||++........+... .....|...|.+++|+|++..++++++.||.|++||++...   
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            99999999999 79999999998543333222111 12335678999999999976799999999999999987533   


Q ss_pred             ---eeEeecCCCC------------CeEEEEEecCCCEEEEEeCCccEEEEeCCC-CCcCCCcccCCc-cee-eeeecCC
Q 006424          453 ---HKFKGLPKSG------------SQMSASFTTTGKHIISIGDDCRVYVWNYDE-LCFPSSKQKNSV-RSC-EHFFSEG  514 (645)
Q Consensus       453 ---~~~~~~~~~~------------~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~-~~~~~~~~~~~~-~~~-~~~~~~g  514 (645)
                         ..+..  +..            .|.+++|+|++++|++++. |.|++||+.. +........... ... .......
T Consensus       264 ~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~  340 (447)
T 3dw8_B          264 RHSKLFEE--PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND  340 (447)
T ss_dssp             TTCEEECC--C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred             ceeeEecc--CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence               33333  443            8999999999999999998 9999999986 432221111100 000 0000000


Q ss_pred             c---EEEEecCCCCccccccCCCCccccCccccccccCCc----------------------------------cCCCCc
Q 006424          515 V---SVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPW----------------------------------IRDSER  557 (645)
Q Consensus       515 ~---~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~----------------------------------~~~~~~  557 (645)
                      .   +..++|+|++.+|++.+.|+   .+.+|+.......                                  ......
T Consensus       341 ~i~~~~~~~~s~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (447)
T 3dw8_B          341 CIFDKFECCWNGSDSVVMTGSYNN---FFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNK  417 (447)
T ss_dssp             GGGCCCCEEECTTSSEEEEECSTT---EEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTS
T ss_pred             ccccceEEEECCCCCEEEEeccCC---EEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCC
Confidence            0   12366777777666555543   2445544222110                                  112334


Q ss_pred             cccCccccCCCCCCcCCCCCCCcCCCCC
Q 006424          558 FSLGSWFSNDGPCRGSATWPAEKLPLWD  585 (645)
Q Consensus       558 ~~~~~~fs~dg~~l~s~s~~d~~i~iWd  585 (645)
                      .+..++|+|++.++++++.  ..+++|.
T Consensus       418 ~i~~~~~~p~~~~la~~~~--~~~~~~~  443 (447)
T 3dw8_B          418 KILHTAWHPKENIIAVATT--NNLYIFQ  443 (447)
T ss_dssp             CCCEEEECSSSSEEEEECS--SCEEEEE
T ss_pred             ceeEEEECCCCCEEEEEec--ceeeeec
Confidence            5778999999999988775  3577775

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.7e-28  Score=250.07  Aligned_cols=234  Identities=13%  Similarity=0.142  Sum_probs=179.8

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec
Q 006424          205 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  284 (645)
Q Consensus       205 ~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  284 (645)
                      ...+.+++.+|++|+.||+|++||+.++                                             +.+..+.
T Consensus        41 ~~~~~~d~~~l~sg~~Dg~v~iwd~~~~---------------------------------------------~~~~~~~   75 (343)
T 3lrv_A           41 NKSMYYDKWVCMCRCEDGALHFTQLKDS---------------------------------------------KTITTIT   75 (343)
T ss_dssp             CSSSSEEEEEEEEEEETTEEEEEEESSS---------------------------------------------SCEEEEE
T ss_pred             hhhhcCCCCEEEEECCCCcEEEEECCCC---------------------------------------------cEEEEEe
Confidence            3345568889999999999999999873                                             2333333


Q ss_pred             cCccCeEEEEEcCCCeEEEEeCCCcEEEEecC---------CCeEEEEe--cCCCcEEEEEEee-CCCCEEEEEeCCCcE
Q 006424          285 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG---------CNQCLNVF--DHHNYVTCVQFNP-IDDNYFISGSIDGKV  352 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~---------~~~~~~~~--~~~~~v~~l~~~p-~~~~~l~s~s~dg~i  352 (645)
                        ...|.++.|+|+  +++++.|++|++|+..         +++.+..+  .|...|.+++|+| .+++++++++.||+|
T Consensus        76 --~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i  151 (343)
T 3lrv_A           76 --TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTI  151 (343)
T ss_dssp             --EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCE
T ss_pred             --cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcE
Confidence              456777788887  9999999999999665         45544444  4667899999998 257899999999999


Q ss_pred             EEEeCCCCcEEEee--ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          353 RIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       353 ~vwd~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      ++||+++++.....  .+...+++++|+|+|.++++|+.||.|++||+++.......+..     .|...|++++|+|+|
T Consensus       152 ~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~fs~~g  226 (343)
T 3lrv_A          152 GFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-----DEEAKIKEVKFADNG  226 (343)
T ss_dssp             EEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----CTTSCEEEEEECTTS
T ss_pred             EEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----cCCCCEEEEEEeCCC
Confidence            99999998876543  45567999999999999999999999999999987754222221     245899999999998


Q ss_pred             CcEEEEEECCCeEEEEECCcceee--Eee-cCCCCCe--EEEEEecCCCEEEEEeC-CccEEEEeCCCCC
Q 006424          431 SQRIMITSEDSKLRILDGVDVIHK--FKG-LPKSGSQ--MSASFTTTGKHIISIGD-DCRVYVWNYDELC  494 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~~~~~~~--~~~-~~~~~~i--~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~  494 (645)
                       .+|++++ |+.|++||++.....  +.. ..+...+  .+++|+|++++|++++. |+.|++|++....
T Consensus       227 -~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          227 -YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             -SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             -CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence             7899999 559999998754322  211 0122223  46999999999999998 9999999997653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=9.6e-28  Score=254.46  Aligned_cols=239  Identities=23%  Similarity=0.447  Sum_probs=196.9

Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      .....+.+|.+.|++++|  ++++|++|+.||.|++||+.+                                       
T Consensus       164 ~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~---------------------------------------  202 (435)
T 1p22_A          164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT---------------------------------------  202 (435)
T ss_dssp             CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS---------------------------------------
T ss_pred             eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC---------------------------------------
Confidence            355678899999999999  788999999999999999987                                       


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEE---EEe-cCCCcEEEEEEeeCCCCEEEEE
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL---NVF-DHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~---~~~-~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                            ++.+..+.+|...|.+++|++ +.+++|+.||.|++||+.++...   ..+ .|...|.+++|   +++++++|
T Consensus       203 ------~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~  272 (435)
T 1p22_A          203 ------GEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSA  272 (435)
T ss_dssp             ------CCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEE
T ss_pred             ------CcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEE
Confidence                  445677889999999999974 59999999999999999887654   333 58899999999   57899999


Q ss_pred             eCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          347 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      +.||.|++||+++++... +..|...|.++.+  +++++++|+.||.|++||+++......   +.    .|...|.+++
T Consensus       273 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~---~~----~h~~~v~~~~  343 (435)
T 1p22_A          273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV---LE----GHEELVRCIR  343 (435)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE---EC----CCSSCEEEEE
T ss_pred             eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE---Ee----CCcCcEEEEE
Confidence            999999999999887665 6678899999998  478999999999999999998764322   22    2457899999


Q ss_pred             EcCCCCcEEEEEECCCeEEEEECCcce---------eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          426 FSRDESQRIMITSEDSKLRILDGVDVI---------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg~I~iwd~~~~~---------~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      |  ++ .++++|+.||.|++||+....         .......|.+.|.+++|  ++.+|++|+.||.|++||+.+..
T Consensus       344 ~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          344 F--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             C--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred             e--cC-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence            9  44 689999999999999975322         33334458889999999  78899999999999999998764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.7e-28  Score=257.53  Aligned_cols=268  Identities=13%  Similarity=0.122  Sum_probs=199.2

Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      .+++|.+.|++++|+|+|       .++.+.+|+.+.                                           
T Consensus        47 ~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~-------------------------------------------   76 (588)
T 2j04_A           47 DINCNSKNLFHVKEFPLE-------FENKLDFELAQQ-------------------------------------------   76 (588)
T ss_dssp             CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS-------------------------------------------
T ss_pred             eecCCCccEEEEEECCCC-------CcceEEEEeCCC-------------------------------------------
Confidence            346899999999999998       455555554332                                           


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCC-----cEEEEEEeeCCCCEEEEEeC
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----~v~~l~~~p~~~~~l~s~s~  348 (645)
                         .....+ +|...|.+++|+|+| .|++++.||.|++||...  ++..+.|..     .+.+++|+| ++++|++|+.
T Consensus        77 ---~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSP-DG~~LAsgs~  149 (588)
T 2j04_A           77 ---NGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNP-IESSIVVGNE  149 (588)
T ss_dssp             ---SCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECS-SSSCEEEEET
T ss_pred             ---ceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcC-CCCEEEEEcC
Confidence               111222 458899999999998 899999999999999644  666556444     499999999 9999999999


Q ss_pred             CCcEEEEeCCCCcE--------EEe----eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424          349 DGKVRIWGVCEKRV--------VDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  416 (645)
Q Consensus       349 dg~i~vwd~~~~~~--------~~~----~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  416 (645)
                      ||+|++||+.++.+        ..+    .+|...|.+++|+|+|  +++++.|+.+++||+.+.........+.   ..
T Consensus       150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~---~~  224 (588)
T 2j04_A          150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ---NA  224 (588)
T ss_dssp             TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE---CC
T ss_pred             CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec---cc
Confidence            99999999998752        333    5677899999999999  8889999999999998776421000111   12


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee-eEeecCCCCCeEEEEE--ecCCCEEEEEeCCccEEEEeCCCC
Q 006424          417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASF--TTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~i~~v~~--sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      |...|.+++|+  | ..+++++ ++.|++||...... .+. ..|...+..+.|  +|++..|+++++||+ ++|..+.-
T Consensus       225 h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~  298 (588)
T 2j04_A          225 SRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDEL  298 (588)
T ss_dssp             CSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSE
T ss_pred             ccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccE
Confidence            34789999999  4 6888887 69999999886555 444 258999999999  999999999999999 99998521


Q ss_pred             Cc----C-----------CCcccCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424          494 CF----P-----------SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS  533 (645)
Q Consensus       494 ~~----~-----------~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~  533 (645)
                      ..    .           +......   ...+..+..+.+++++|||..++....
T Consensus       299 ~~spd~~l~a~~d~~v~lW~~~g~~---l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          299 HVTADNIIAPYLEKKFKKWSTIWNE---FNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             EEECCCSSHHHHHHHHHHTTTTTTS---SSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             EECCCceEEEEcCCEEEEEECCCCc---eeeeccceEEEEEEECCCCCEEEEEEe
Confidence            10    0           0000000   111222334788999999988885544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=2e-27  Score=245.16  Aligned_cols=295  Identities=12%  Similarity=0.134  Sum_probs=225.1

Q ss_pred             CCCceeeccCccCeEEEEEcCC---C-eEEEEeCCCcEEEEecCC-CeEE-EEe-cCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          277 ESPLQELHGHKGDVLDLAWSNS---N-YLLSCSMDKTVRMWQVGC-NQCL-NVF-DHHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~---~-~l~s~s~dg~I~iwd~~~-~~~~-~~~-~~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                      ...+..+.+|.+.|++++|+|+   + +|++|+.||.|++||+.+ +..+ ..+ .|...|.+++|+| ++++|++++.|
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d  107 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCD  107 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETT
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCC
Confidence            4566778899999999999998   4 899999999999999987 5554 444 5999999999999 99999999999


Q ss_pred             CcEEEEeCCCCcEEEeeccCCCeEEEEE--ccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424          350 GKVRIWGVCEKRVVDWADVRDVISAICY--IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  427 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~--sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s  427 (645)
                      |.|++||+++++......|...|.+++|  +|+++++++++.||.|++||+++..... .+..+       ..+.++.+.
T Consensus       108 g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~-------~~~~~~~~~  179 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-VLQLP-------ERCYCADVI  179 (368)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSE-EEECS-------SCEEEEEEE
T ss_pred             CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEE-EEecC-------CCceEEEec
Confidence            9999999999999999999999999999  8999999999999999999998776432 22221       456777776


Q ss_pred             CCCCcEEEEEECCCeEEEEECCcceeeEee--cCCCCCeEEEEEecCCCE----EEEEeCCccEEEEeCCCCCcCC----
Q 006424          428 RDESQRIMITSEDSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKH----IISIGDDCRVYVWNYDELCFPS----  497 (645)
Q Consensus       428 ~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~----l~t~s~dg~I~iwd~~~~~~~~----  497 (645)
                      ++   .+++++.++.+++|+.......+..  ......+..+.+.++...    +++++.||.|++||++......    
T Consensus       180 ~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~  256 (368)
T 3mmy_A          180 YP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT  256 (368)
T ss_dssp             TT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEE
T ss_pred             CC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccccee
Confidence            54   7888999999999998754433332  224456677777766655    9999999999999998763200    


Q ss_pred             -CcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccC--CccCCCCccccCccccCCCCCCcCC
Q 006424          498 -SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETA--PWIRDSERFSLGSWFSNDGPCRGSA  574 (645)
Q Consensus       498 -~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~~fs~dg~~l~s~  574 (645)
                       ..+...........+...+.+++|+|++.+|++.+.|+.   +.+|+.....  .....+...+.+++|+|||++++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  333 (368)
T 3mmy_A          257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR---FSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYA  333 (368)
T ss_dssp             EECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC---EEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred             eeeeecccccccccccccceEEEEEecCCCEEEEEccCCe---EEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEE
Confidence             000000000001112236889999999999998877643   6678775433  2556778889999999999999998


Q ss_pred             CCCCCcCCCCCCc
Q 006424          575 TWPAEKLPLWDVT  587 (645)
Q Consensus       575 s~~d~~i~iWd~~  587 (645)
                      +. ++..+.|++-
T Consensus       334 s~-d~~~~~~~~~  345 (368)
T 3mmy_A          334 SS-YDWSKGHEFY  345 (368)
T ss_dssp             EC-CCSTTCGGGC
T ss_pred             ec-cccccccccc
Confidence            76 6666666544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=5.7e-28  Score=252.45  Aligned_cols=254  Identities=15%  Similarity=0.150  Sum_probs=175.2

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      ...|.+.+....+++++.+|++|+.|++|+|||+.++....                                       
T Consensus        85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~---------------------------------------  125 (393)
T 4gq1_A           85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIIT---------------------------------------  125 (393)
T ss_dssp             CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEE---------------------------------------
T ss_pred             ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccce---------------------------------------
Confidence            34566667777778888999999999999999998743221                                       


Q ss_pred             cCCCceeeccCccCeEEEEEcC--------CC-eEEEEeCCCcEEEEecCCCeEEE-EecCCCcEEEEEEeeCCCCEEEE
Q 006424          276 EESPLQELHGHKGDVLDLAWSN--------SN-YLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~--------~~-~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~v~~l~~~p~~~~~l~s  345 (645)
                       ...+..+.||.+.|++++|+|        ++ +|+||+.|++|+|||+.++.++. .+.|...|.+++|+|.+.++|++
T Consensus       126 -~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  204 (393)
T 4gq1_A          126 -QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIV  204 (393)
T ss_dssp             -EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred             -eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEe
Confidence             122445789999999999986        55 89999999999999998776554 55799999999999944468999


Q ss_pred             EeCCCcEEEEeCCCCcEEE--------------------------eeccCCCeEEEEEc-cCCCEEEEEecCCeEEEEEe
Q 006424          346 GSIDGKVRIWGVCEKRVVD--------------------------WADVRDVISAICYI-PDGKGFIVGSITGTCHFYKA  398 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~~~~--------------------------~~~~~~~v~~l~~s-p~g~~l~~g~~dg~i~iwd~  398 (645)
                      |+.|++|++||+++++...                          ..+|...+.++.|+ |+++.+++++.|+.+++||+
T Consensus       205 ~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~  284 (393)
T 4gq1_A          205 GERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNL  284 (393)
T ss_dssp             EETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC
T ss_pred             cCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEEC
Confidence            9999999999998765321                          23566778899986 79999999999999999998


Q ss_pred             cCCceeeeEEeecc-----------ccccCCCCeEEEEEcC-CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEE
Q 006424          399 SGNDLKLEKVDFHD-----------RKKTSGNKITGIQFSR-DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMS  466 (645)
Q Consensus       399 ~~~~~~~~~~~~~~-----------~~~~~~~~i~~i~~s~-~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~  466 (645)
                      ..............           .............|+| .+..++++|+.||.|++||............|..+|.+
T Consensus       285 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~s  364 (393)
T 4gq1_A          285 FANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVD  364 (393)
T ss_dssp             -------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEE
T ss_pred             ccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEE
Confidence            76543221100000           0000011222233444 33356778889999999998755444444447789999


Q ss_pred             EEEecCCCEEEEEeCCccEEEEeC
Q 006424          467 ASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       467 v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      ++|+|||++||+++++| +.+|++
T Consensus       365 vafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          365 FCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEEcCCCCEEEEEeCCC-eEEEEE
Confidence            99999999999998776 555554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=3.1e-26  Score=239.04  Aligned_cols=251  Identities=10%  Similarity=0.072  Sum_probs=196.1

Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEE
Q 006424          213 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  292 (645)
Q Consensus       213 ~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  292 (645)
                      .++++++.|+.|++||+.++                                             +.+..+.+|. .+.+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~---------------------------------------------~~~~~~~~~~-~~~~   36 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN---------------------------------------------KVTATIPVGS-NPMG   36 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT---------------------------------------------EEEEEEECSS-SEEE
T ss_pred             EEEEEcCCCCEEEEEECCCC---------------------------------------------eEEEEeecCC-Ccce
Confidence            46888999999999999873                                             3345566554 5899


Q ss_pred             EEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEE-EEeCCCcEEEEeCCCCcEEEeeccC
Q 006424          293 LAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRIWGVCEKRVVDWADVR  369 (645)
Q Consensus       293 l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~  369 (645)
                      ++|+|++ ++ ++++.|+.|++||+.+++.+..+.+...+.+++|+| ++++++ +++.++.|++||+.+++......+.
T Consensus        37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~  115 (391)
T 1l0q_A           37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG  115 (391)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC
Confidence            9999997 55 677799999999999999999988777999999999 888775 4556799999999999988877777


Q ss_pred             CCeEEEEEccCCCEE-EEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC
Q 006424          370 DVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  448 (645)
Q Consensus       370 ~~v~~l~~sp~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~  448 (645)
                      ..+.+++|+|+++.+ ++++.++.|++||+.+..... .+..       ...+.+++|+|++..++++++.++.|++||+
T Consensus       116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~-------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~  187 (391)
T 1l0q_A          116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN-TVSV-------GRSPKGIAVTPDGTKVYVANFDSMSISVIDT  187 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEEC-------CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEec-------CCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence            889999999999977 677789999999998775432 2221       2467999999998444477788999999998


Q ss_pred             CcceeeEeecCCCCCeEEEEEecCCCEEEEEe---CCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCC
Q 006424          449 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIG---DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG  525 (645)
Q Consensus       449 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~  525 (645)
                      ......... .+...+.+++|+|++++|++++   .++.|++||+.+++..           ..+.....+..++|+|++
T Consensus       188 ~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-----------~~~~~~~~~~~~~~s~dg  255 (391)
T 1l0q_A          188 VTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-----------ARIPVGPDPAGIAVTPDG  255 (391)
T ss_dssp             TTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-----------EEEECCSSEEEEEECTTS
T ss_pred             CCCeEEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-----------EEEecCCCccEEEEccCC
Confidence            765433332 2456789999999999999988   6899999999876321           112222335677888888


Q ss_pred             ccccc
Q 006424          526 TEQKS  530 (645)
Q Consensus       526 ~~l~~  530 (645)
                      ..++.
T Consensus       256 ~~l~~  260 (391)
T 1l0q_A          256 KKVYV  260 (391)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            77753

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.8e-26  Score=244.21  Aligned_cols=275  Identities=13%  Similarity=0.072  Sum_probs=210.5

Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      .+..+ ..+.+++|+|++.++++++.|+.|++||+.++....                                      
T Consensus       118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~--------------------------------------  158 (433)
T 3bws_A          118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR--------------------------------------  158 (433)
T ss_dssp             EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE--------------------------------------
T ss_pred             EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee--------------------------------------
Confidence            34444 346699999988888888899999999998743221                                      


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEE-EEeCCCc
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI-SGSIDGK  351 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~-s~s~dg~  351 (645)
                        ......+.+|...|.+++|++++ .+++++.|+.|++||+++++.+..+. |...+.+++|+| +++.++ +++.|+.
T Consensus       159 --~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~  235 (433)
T 3bws_A          159 --LSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISED  235 (433)
T ss_dssp             --ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTE
T ss_pred             --ecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCc
Confidence              01112456899999999999887 78899999999999999998888775 788999999999 888775 5557999


Q ss_pred             EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe--------cCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424          352 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS--------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  423 (645)
Q Consensus       352 i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (645)
                      |++||+++++..........+.+++|+|+|+++++++        .||.|++||+.+...... ...       ...+.+
T Consensus       236 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~-------~~~~~~  307 (433)
T 3bws_A          236 ISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-IGP-------PGNKRH  307 (433)
T ss_dssp             EEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-EEE-------EECEEE
T ss_pred             EEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-ccC-------CCCcce
Confidence            9999999998887777777899999999999999988        488999999987654322 211       246889


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC---------------CccEEEE
Q 006424          424 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---------------DCRVYVW  488 (645)
Q Consensus       424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~---------------dg~I~iw  488 (645)
                      ++|+|++..++++++.|+.|++||.......... .+...+.+++|+|++++|++++.               ||.|++|
T Consensus       308 ~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~  386 (433)
T 3bws_A          308 IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVI  386 (433)
T ss_dssp             EEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred             EEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEE
Confidence            9999998556777799999999998754433332 25678999999999999988876               5799999


Q ss_pred             eCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcccccc
Q 006424          489 NYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL  531 (645)
Q Consensus       489 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~  531 (645)
                      |+.+++...           .+.....+..++|+|++..|+..
T Consensus       387 d~~~~~~~~-----------~~~~~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          387 DTTTDTVKE-----------FWEAGNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             ETTTTEEEE-----------EEECSSSEEEEEECTTSCEEEEE
T ss_pred             ECCCCcEEE-----------EecCCCCCceEEEcCCCCEEEEE
Confidence            998763111           12223345666666666666543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1e-26  Score=263.34  Aligned_cols=251  Identities=17%  Similarity=0.208  Sum_probs=197.6

Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecC--CCeEEEEe-cCCCcEEEEEEeeCC--CCEEEEEeCCCcEEE
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVF-DHHNYVTCVQFNPID--DNYFISGSIDGKVRI  354 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~--~~~~~~~~-~~~~~v~~l~~~p~~--~~~l~s~s~dg~i~v  354 (645)
                      ..+.+|.+.|++++|+|++ +|++|+.||+|++||+.  +++.+..+ .|...|++++|+| +  +++|++|+.||.|++
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEE
Confidence            4678999999999999987 89999999999999998  44556666 4999999999998 6  899999999999999


Q ss_pred             EeCCCCc---EEEeeccCCCeEEEEEccC--CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          355 WGVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       355 wd~~~~~---~~~~~~~~~~v~~l~~sp~--g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      ||+.+++   ......|...|++++|+|+  ++.+++|+.||.|++||++......... ..    .|...|.++.|+|.
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~-~~----~~~~~v~~l~~~p~  156 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-ID----AHAIGVNSASWAPA  156 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE-EE----CCSSCEEEEEECCC
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE-ee----cCCCceEEEEecCc
Confidence            9999875   4456779999999999999  9999999999999999998774322211 12    23578999999994


Q ss_pred             -------------CCcEEEEEECCCeEEEEECCcc----eeeEeecCCCCCeEEEEEecC---CCEEEEEeCCccEEEEe
Q 006424          430 -------------ESQRIMITSEDSKLRILDGVDV----IHKFKGLPKSGSQMSASFTTT---GKHIISIGDDCRVYVWN  489 (645)
Q Consensus       430 -------------g~~~l~~~s~dg~I~iwd~~~~----~~~~~~~~~~~~i~~v~~sp~---~~~l~t~s~dg~I~iwd  489 (645)
                                   + .++++++.||.|++||++..    ........|...|.+++|+|+   +++|++|+.||.|++||
T Consensus       157 ~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          157 TIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             C---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             ccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                         5 79999999999999997643    222334558899999999999   99999999999999999


Q ss_pred             CCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCcccccc
Q 006424          490 YDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL  546 (645)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~  546 (645)
                      +.++.........     ....+.+.+.+++|+|++..+++.+.|+   .+.+|+..
T Consensus       236 ~~~~~~~~~~~~~-----~~~~~~~~v~~l~~spdg~~l~s~s~Dg---~I~vwd~~  284 (753)
T 3jro_A          236 QDNEQGPWKKTLL-----KEEKFPDVLWRASWSLSGNVLALSGGDN---KVTLWKEN  284 (753)
T ss_dssp             ESSSSSCCBCCBS-----SSSCCSSCCCCEEECTTTCCEEEECSSS---CEECCBCC
T ss_pred             CCCCCCcceeEEe-----ccCCCCCceEEEEEcCCCCEEEEEcCCC---EEEEEecC
Confidence            9886422211111     0112355677889999999988877764   35677764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=1.6e-26  Score=244.53  Aligned_cols=206  Identities=14%  Similarity=0.196  Sum_probs=168.9

Q ss_pred             eeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCC----------CeEEEEe-cCCCcEEEEEEeeCCCC-EEEEE
Q 006424          281 QELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGC----------NQCLNVF-DHHNYVTCVQFNPIDDN-YFISG  346 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~----------~~~~~~~-~~~~~v~~l~~~p~~~~-~l~s~  346 (645)
                      ....+|.+.|++++|+|+ + +|++++.||.|++||+.+          ...+..+ .|...|.+++|+| ++. +|++|
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~  200 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNGYLLSA  200 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT-TSTTEEEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC-CCCCeEEEE
Confidence            445679999999999997 4 899999999999999976          4555555 5889999999999 666 99999


Q ss_pred             eCCCcEEEEeCCCCc--------EEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCc--eeeeEEeeccccc
Q 006424          347 SIDGKVRIWGVCEKR--------VVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGND--LKLEKVDFHDRKK  415 (645)
Q Consensus       347 s~dg~i~vwd~~~~~--------~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~  415 (645)
                      +.||.|++||+..+.        ...+..|...|.+++|+| ++.+|++++.||.|++||++...  .....+.      
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~------  274 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD------  274 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE------
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee------
Confidence            999999999998732        234568899999999999 67899999999999999999763  2222221      


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-eeeEeecCCCCCeEEEEEecCCC-EEEEEeCCccEEEEeCCCC
Q 006424          416 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       416 ~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s~dg~I~iwd~~~~  493 (645)
                      .|...|++++|+|++..++++++.||.|++||++.. ........|...|.+++|+|+++ +|++++.||.|+|||+...
T Consensus       275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred             cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence            235789999999998668999999999999998752 22223334888999999999985 7999999999999999764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.3e-26  Score=240.64  Aligned_cols=248  Identities=13%  Similarity=0.065  Sum_probs=193.2

Q ss_pred             ccccccCcEEEEEECCCCCEE-EEEeCCCcEEEEEcC--CCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          195 EIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspdg~~L-~sgs~Dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ...+|.+.|++++|+|+|++| ++|+.||.|++||+.  +                                        
T Consensus        97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~----------------------------------------  136 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS----------------------------------------  136 (450)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS----------------------------------------
T ss_pred             CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC----------------------------------------
Confidence            456799999999999999996 899999999999998  4                                        


Q ss_pred             ceeccCCCceeec--cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEE----Ee-cCCCcEEEEEEeeCC---C
Q 006424          272 VFQIEESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN----VF-DHHNYVTCVQFNPID---D  340 (645)
Q Consensus       272 ~~~~~~~~~~~l~--~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~----~~-~~~~~v~~l~~~p~~---~  340 (645)
                           +..+..+.  .|...|.+++|+|++ +|++|+.||.|++|++.+++...    .+ .|...|++++|+| +   +
T Consensus       137 -----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~  210 (450)
T 2vdu_B          137 -----KNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGH  210 (450)
T ss_dssp             -----SSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSC
T ss_pred             -----CceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCC
Confidence                 23344444  577899999999997 89999999999999998876553    33 5889999999999 8   8


Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEEE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc-----
Q 006424          341 NYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-----  413 (645)
Q Consensus       341 ~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-----  413 (645)
                      ++|++|+.|+.|++||++++....  ..+|...|.+++|+ ++++|++++.|+.|++||+.+...... +.....     
T Consensus       211 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~~  288 (450)
T 2vdu_B          211 QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLST-FDYNSLIKPYL  288 (450)
T ss_dssp             EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEE-EECHHHHGGGC
T ss_pred             cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeee-ecchhhhhhhh
Confidence            899999999999999999877654  45789999999999 999999999999999999998765332 221110     


Q ss_pred             --------------cccCCCCeEEEEEcCCCCcEEEEEE-CCCeEEEEEC--Ccc---eeeEeecCCCCCeEEEEEecCC
Q 006424          414 --------------KKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDG--VDV---IHKFKGLPKSGSQMSASFTTTG  473 (645)
Q Consensus       414 --------------~~~~~~~i~~i~~s~~g~~~l~~~s-~dg~I~iwd~--~~~---~~~~~~~~~~~~i~~v~~sp~~  473 (645)
                                    .......+.++.|+|++ .++++++ .|+.|++|++  ...   ........+ ..+.+++|+|++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~  366 (450)
T 2vdu_B          289 NDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE  366 (450)
T ss_dssp             CTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred             hhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc
Confidence                          00224578999999997 7888888 8999999998  322   222222224 789999999964


Q ss_pred             CEEEEEeC------CccEEEEeCCC
Q 006424          474 KHIISIGD------DCRVYVWNYDE  492 (645)
Q Consensus       474 ~~l~t~s~------dg~I~iwd~~~  492 (645)
                      .++++++.      +..|.+|.++.
T Consensus       367 ~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          367 FQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             EEEEEecccCCCCCCcceEEEEEEc
Confidence            33433332      45588887654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=6.5e-26  Score=233.39  Aligned_cols=237  Identities=11%  Similarity=0.123  Sum_probs=167.5

Q ss_pred             CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEE-EEEeCCCcEEE
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGSIDGKVRI  354 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l-~s~s~dg~i~v  354 (645)
                      ..++..+.+|...|++++|+|++ +|++|+.+ .+++||+.+++......+. .+..+++.+ +++.+ ++++.|++|++
T Consensus         9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~d~~v~i   85 (355)
T 3vu4_A            9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLH-RTNYVAFVTGVKEVVHI   85 (355)
T ss_dssp             ----------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS-CCCEEEECT-TSSEEEEECSSTTEEEE
T ss_pred             cCCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC-CeEEEEEcC-CCCEEEEEECCccEEEE
Confidence            34456678899999999999998 66666655 5889999988776655443 477888888 66666 56778899999


Q ss_pred             EeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424          355 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  434 (645)
Q Consensus       355 wd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l  434 (645)
                      ||+.+++.+....+...|.+++|+++.  ++++ .++.|++||+.+.......+..         +...+++++ .  ++
T Consensus        86 Wd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---------~~~~~~~s~-~--~l  150 (355)
T 3vu4_A           86 WDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---------FGGVCEFSN-G--LL  150 (355)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---------EEEEEEEET-T--EE
T ss_pred             EECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---------CCceEEEEc-c--EE
Confidence            999999888877788899999998764  4443 4889999999877222221111         233455666 2  44


Q ss_pred             EE--EECCCeEEEEECCcce----------------eeEeecCCCCCeEEEEEecCCCEEEEEeCCcc-EEEEeCCCCCc
Q 006424          435 MI--TSEDSKLRILDGVDVI----------------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCR-VYVWNYDELCF  495 (645)
Q Consensus       435 ~~--~s~dg~I~iwd~~~~~----------------~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~-I~iwd~~~~~~  495 (645)
                      ++  |+.||.|++||+....                .......|...|.+++|+|+|++|++|+.||+ |++||+.+++.
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~  230 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL  230 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            44  6889999999987532                02333458999999999999999999999998 99999987632


Q ss_pred             CCCcccCCcceeeeee---cCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424          496 PSSKQKNSVRSCEHFF---SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  545 (645)
Q Consensus       496 ~~~~~~~~~~~~~~~~---~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~  545 (645)
                      .           ..+.   +.+.+..++|+|++.+|++.+.|   ..+++|+.
T Consensus       231 ~-----------~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d---~~v~iw~~  269 (355)
T 3vu4_A          231 V-----------REFRRGLDRADVVDMKWSTDGSKLAVVSDK---WTLHVFEI  269 (355)
T ss_dssp             E-----------EEEECTTCCSCEEEEEECTTSCEEEEEETT---CEEEEEES
T ss_pred             E-----------EEEEcCCCCCcEEEEEECCCCCEEEEEECC---CEEEEEEc
Confidence            1           1122   45677888888888888876665   33556665

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=1.9e-26  Score=240.92  Aligned_cols=241  Identities=14%  Similarity=0.097  Sum_probs=164.3

Q ss_pred             cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE-----e-cCCCcEEEEEEee-------CCCCEEEEEeCCC
Q 006424          285 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-----F-DHHNYVTCVQFNP-------IDDNYFISGSIDG  350 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~-----~-~~~~~v~~l~~~p-------~~~~~l~s~s~dg  350 (645)
                      .|...+....+.+++ +|++++.|++|++||.++++....     + +|.+.|++++|+|       .++++|++|+.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            455555545555555 799999999999999998876542     2 4999999999987       2678999999999


Q ss_pred             cEEEEeCCCC-cEEEeeccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeec-----------------
Q 006424          351 KVRIWGVCEK-RVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFH-----------------  411 (645)
Q Consensus       351 ~i~vwd~~~~-~~~~~~~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----------------  411 (645)
                      +|++||++++ .......|...+.+++|+|++. +|++|+.||.|++||+++...........                 
T Consensus       167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            9999999765 4566788999999999999875 89999999999999998765432211000                 


Q ss_pred             -cccccCCCCeEEEEEc-CCCCcEEEEEECCCeEEEEECCcceeeEeecCCCC------------------CeEEEEEec
Q 006424          412 -DRKKTSGNKITGIQFS-RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSG------------------SQMSASFTT  471 (645)
Q Consensus       412 -~~~~~~~~~i~~i~~s-~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~------------------~i~~v~~sp  471 (645)
                       .....|...+.++.|+ +++ ..+++++.|+.+++||+...........+..                  ......|+|
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP  325 (393)
T ss_dssp             -----CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred             eeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence             0112355778899987 676 8999999999999999753221111111211                  222233444


Q ss_pred             --CCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCc
Q 006424          472 --TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL  536 (645)
Q Consensus       472 --~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~  536 (645)
                        ++.++++|+.||+|++||+.++....          ....+.+.+.+++|+|||.+|+..+.+++
T Consensus       326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~----------~~~~~~~~V~svafspdG~~LA~as~~Gv  382 (393)
T 4gq1_A          326 RYMDYFATAHSQHGLIQLINTYEKDSNS----------IPIQLGMPIVDFCWHQDGSHLAIATEGSV  382 (393)
T ss_dssp             SCTTEEEEEETTTTEEEEEETTCTTCCE----------EEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCcEEE----------EecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence              34567788899999999998773211          12345677999999999999998877654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.95  E-value=7.8e-26  Score=233.62  Aligned_cols=198  Identities=15%  Similarity=0.163  Sum_probs=160.5

Q ss_pred             ccccCcEEEEEECCCCCEEEEE--eCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          197 QAHKGCIWTLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       197 ~~H~~~V~~l~fspdg~~L~sg--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      ..+...+.+++|||||++|++|  +.|++|+|||+.++                                          
T Consensus       130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~------------------------------------------  167 (365)
T 4h5i_A          130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL------------------------------------------  167 (365)
T ss_dssp             CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT------------------------------------------
T ss_pred             CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC------------------------------------------
Confidence            4566779999999999988755  47899999999873                                          


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                         ..+..+. |.+.|.+++|+|++ ++++++ ++.+++|+..+++.+...   .|...|.+++|+| ++.++++++.|+
T Consensus       168 ---~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~  241 (365)
T 4h5i_A          168 ---TEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKK  241 (365)
T ss_dssp             ---EEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESS
T ss_pred             ---cEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCC
Confidence               3344444 77889999999998 666666 556777777666655432   4788999999999 999999999887


Q ss_pred             ----cEEEEeCCCCcE-----EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424          351 ----KVRIWGVCEKRV-----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  421 (645)
Q Consensus       351 ----~i~vwd~~~~~~-----~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  421 (645)
                          .+++|++.....     ..+.+|...|++++|+|+|++||+|+.|+.|++||+++.+....      ....|...|
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~------~~~gH~~~V  315 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI------FKQAHSFAI  315 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE------ETTSSSSCE
T ss_pred             cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE------ecCcccCCE
Confidence                688899876543     34667889999999999999999999999999999988764322      123456899


Q ss_pred             EEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424          422 TGIQFSRDESQRIMITSEDSKLRILDGV  449 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~  449 (645)
                      ++++|+|+| ++|++++.|++|+|||+.
T Consensus       316 ~~v~fSpdg-~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          316 TEVTISPDS-TYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEEEECTTS-CEEEEEETTSEEEEEECC
T ss_pred             EEEEECCCC-CEEEEEeCCCeEEEEEcC
Confidence            999999998 899999999999999975

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=1.4e-24  Score=226.54  Aligned_cols=245  Identities=13%  Similarity=0.132  Sum_probs=194.9

Q ss_pred             cccccccccCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      ..+.+.+|. .+.+++|+|+|++| ++++.|+.|++||+.++                                      
T Consensus        24 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--------------------------------------   64 (391)
T 1l0q_A           24 VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN--------------------------------------   64 (391)
T ss_dssp             EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------------------------------------
T ss_pred             EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC--------------------------------------
Confidence            344566665 48999999999976 67779999999999873                                      


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCC-eEE-EEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEE-EEEe
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGS  347 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~-s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l-~s~s  347 (645)
                             +.+..+..|. .+.+++|+|++ +|+ +++.++.|++||+.+++.+..+.+...+.+++|+| +++.+ ++++
T Consensus        65 -------~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~  135 (391)
T 1l0q_A           65 -------NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNN  135 (391)
T ss_dssp             -------EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEET
T ss_pred             -------eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECC-CCCEEEEEeC
Confidence                   3344454444 89999999987 554 55567999999999999998888778899999999 88866 6888


Q ss_pred             CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEE-EEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424          348 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       348 ~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                      .|+.|++||+.+++..........+.+++|+|+++++ ++++.++.|++||+++..... .+.       +...+.+++|
T Consensus       136 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~-------~~~~~~~~~~  207 (391)
T 1l0q_A          136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID-TVK-------VEAAPSGIAV  207 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEE-------CSSEEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE-EEe-------cCCCccceEE
Confidence            8999999999999888776667788999999999987 566788999999998775432 221       1257899999


Q ss_pred             cCCCCcEEEEEE---CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEE-EEEeCCccEEEEeCCCCC
Q 006424          427 SRDESQRIMITS---EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       427 s~~g~~~l~~~s---~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l-~t~s~dg~I~iwd~~~~~  494 (645)
                      +|+| .++++++   .++.|++||+.......... ....+.+++|+|++++| ++++.|+.|++||+.+++
T Consensus       208 ~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          208 NPEG-TKAYVTNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             CTTS-SEEEEEEECSSCCEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCC-CEEEEEecCcCCCcEEEEECCCCeEEEEEe-cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence            9998 6677666   78999999987544333332 23457899999999988 667889999999998864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=9.6e-25  Score=231.00  Aligned_cols=242  Identities=10%  Similarity=0.077  Sum_probs=201.1

Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      .+.+|.+.|++++|+|+++++++++.|+.|++||+.+                                           
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-------------------------------------------  200 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT-------------------------------------------  200 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-------------------------------------------
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-------------------------------------------
Confidence            4668999999999999999999999999999999986                                           


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-----
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-----  347 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s-----  347 (645)
                        .+.+..+..|...+.+++|+|++ .+ ++++.|+.|++||+++++.+..+.....+.+++|+| +++.+++++     
T Consensus       201 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~  277 (433)
T 3bws_A          201 --LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASN  277 (433)
T ss_dssp             --CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCT
T ss_pred             --ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCc
Confidence              34456677889999999999987 55 455589999999999999998888777899999999 898988888     


Q ss_pred             ---CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEE-EEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424          348 ---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  423 (645)
Q Consensus       348 ---~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (645)
                         .|+.|++||+++++......+...+.+++|+|+++.+ ++++.++.|++||+.+..... .+.       +...+.+
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~-~~~-------~~~~~~~  349 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK-SIP-------VFDKPNT  349 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE-EEE-------CSSSEEE
T ss_pred             cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE-Eec-------CCCCCCe
Confidence               4889999999999888877777789999999999755 556889999999998765432 222       1367899


Q ss_pred             EEEcCCCCcEEEEEEC---------------CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC-CccEEE
Q 006424          424 IQFSRDESQRIMITSE---------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYV  487 (645)
Q Consensus       424 i~~s~~g~~~l~~~s~---------------dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~-dg~I~i  487 (645)
                      ++|+|+| .++++++.               ||.|++||..+........ ....+.+++|+|+|++|++++. |+.|++
T Consensus       350 ~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v  427 (433)
T 3bws_A          350 IALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-AGNQPTGLDVSPDNRYLVISDFLDHQIRV  427 (433)
T ss_dssp             EEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred             EEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-CCCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence            9999998 67777766               5799999987544333322 3557899999999999998875 999999


Q ss_pred             EeCCC
Q 006424          488 WNYDE  492 (645)
Q Consensus       488 wd~~~  492 (645)
                      |+++.
T Consensus       428 ~~~~~  432 (433)
T 3bws_A          428 YRRDG  432 (433)
T ss_dssp             EEETT
T ss_pred             EEecC
Confidence            99864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1e-25  Score=230.84  Aligned_cols=241  Identities=10%  Similarity=0.071  Sum_probs=183.9

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc-CC
Q 006424          200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE-ES  278 (645)
Q Consensus       200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  278 (645)
                      .+.|.++.|+|+   +++|+.|++|++|+......                                     +++.. ..
T Consensus        76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~-------------------------------------~~~~~~~~  115 (343)
T 3lrv_A           76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQIT-------------------------------------ILDSKTNK  115 (343)
T ss_dssp             EECCCTTCCCCS---EEEECSTTEEEEEETTTEEE-------------------------------------EEETTTCC
T ss_pred             cCCceeeeeCCc---eEEecCCCeEEEEEccCceE-------------------------------------EeecCCcc
Confidence            456778888888   99999999999999875110                                     01111 12


Q ss_pred             Cceeec-cCccCeEEEEEcC--CC-eEEEEeCCCcEEEEecCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424          279 PLQELH-GHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKV  352 (645)
Q Consensus       279 ~~~~l~-~h~~~V~~l~~s~--~~-~l~s~s~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~~~p~~~~~l~s~s~dg~i  352 (645)
                      .+..+. +|.+.|.+++|+|  ++ ++++++.||+|++||+++++.+...  .+...+.+++|+| ++.+|++|+.||.|
T Consensus       116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i  194 (343)
T 3lrv_A          116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGIL  194 (343)
T ss_dssp             EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCE
T ss_pred             eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEE
Confidence            233333 6778999999999  77 8999999999999999999987666  3556899999999 99999999999999


Q ss_pred             EEEeCCCCcEE--Eeec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe--EEEEEc
Q 006424          353 RIWGVCEKRVV--DWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI--TGIQFS  427 (645)
Q Consensus       353 ~vwd~~~~~~~--~~~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i--~~i~~s  427 (645)
                      ++||+++++..  .+.. |...|++++|+|+|.+|++++ ++.|++||++..........+..    +...+  .+++|+
T Consensus       195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  269 (343)
T 3lrv_A          195 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI----PEFKTGTVTYDID  269 (343)
T ss_dssp             EEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---------CCEEEEEC
T ss_pred             EEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc----ccccccceEEEEC
Confidence            99999998765  5666 899999999999999999999 55999999987764322111111    11222  579999


Q ss_pred             CCCCcEEEEEEC-CCeEEEEECCcceeeEeecCCCCCeEEEEEec---CCCEEEEEeCCccEEEEeCC
Q 006424          428 RDESQRIMITSE-DSKLRILDGVDVIHKFKGLPKSGSQMSASFTT---TGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       428 ~~g~~~l~~~s~-dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp---~~~~l~t~s~dg~I~iwd~~  491 (645)
                      |+| .+|++++. |+.|++|+.......+..    .++..+.|++   +.+.+++++.||.+.++-..
T Consensus       270 ~~g-~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          270 DSG-KNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             TTS-SEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             CCC-CEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence            998 79999888 999999997644333332    4567888888   88999999999999988644

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=2.5e-24  Score=212.38  Aligned_cols=198  Identities=14%  Similarity=0.088  Sum_probs=140.8

Q ss_pred             cCccCeEEEEEcCCCeEEEEe---CCCcEEEEec-CCCeEEEEe-cCCCcEEEEEEeeC--CCCEEEEEeCCCcEEEEeC
Q 006424          285 GHKGDVLDLAWSNSNYLLSCS---MDKTVRMWQV-GCNQCLNVF-DHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGV  357 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~~l~s~s---~dg~I~iwd~-~~~~~~~~~-~~~~~v~~l~~~p~--~~~~l~s~s~dg~i~vwd~  357 (645)
                      +|...|..+   +++.+++++   .|+.|++|++ .+++.+..+ .|...++.++|+|.  ++.+|++++.|++|++||+
T Consensus       134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl  210 (356)
T 2w18_A          134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL  210 (356)
T ss_dssp             EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET
T ss_pred             CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC
Confidence            455555554   467666654   4999999999 447776655 48888888888873  5689999999999999999


Q ss_pred             CCCcEEEee-cc---CCCeEEEEEccCCCEE------------EEEecCCeEEEEEecCCceeeeEEeeccccccCCCCe
Q 006424          358 CEKRVVDWA-DV---RDVISAICYIPDGKGF------------IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI  421 (645)
Q Consensus       358 ~~~~~~~~~-~~---~~~v~~l~~sp~g~~l------------~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  421 (645)
                      .+++++... ++   ...+.+++|+|+|+++            ++|+.|++|++||..+...... ..... ...|...+
T Consensus       211 ~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v-~~~~~-p~Gh~~~~  288 (356)
T 2w18_A          211 KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV-MLYCL-PPGQAGRF  288 (356)
T ss_dssp             TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEE-EEECC-CTTCCCCE
T ss_pred             CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE-EEeec-cCCCccee
Confidence            999876643 33   3367788999999876            5678899999999987765321 11110 11223344


Q ss_pred             EEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCe-EEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          422 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQ-MSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i-~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      .+..++  + .++++++.|++|+|||+.+.........|...+ ..++|+|||++|++|+.|++|+|||+
T Consensus       289 lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          289 LEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            444444  4 689999999999999988654444433465554 46899999999999999999999996

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.7e-24  Score=227.52  Aligned_cols=303  Identities=11%  Similarity=0.043  Sum_probs=217.9

Q ss_pred             CcEEEEEECCCCC-EEEEEe----CCC----cEEEEEc--CCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          201 GCIWTLKFSPDGR-YLASGG----EDG----VVRIWHV--TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       201 ~~V~~l~fspdg~-~L~sgs----~Dg----~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      ..|....|++.|. ++++|+    .||    .|++||+  .++....                                 
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~---------------------------------  109 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA---------------------------------  109 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE---------------------------------
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe---------------------------------
Confidence            4567777877765 666776    467    8999999  7633210                                 


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcC---------------CCeEEEEeCC------CcEEEEecCCCeEEEEecCCC
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSN---------------SNYLLSCSMD------KTVRMWQVGCNQCLNVFDHHN  328 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~---------------~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~  328 (645)
                                ...+.+|...+..+++++               ++.++.++.+      +.|++||++.+.......|..
T Consensus       110 ----------~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~  179 (415)
T 2hqs_A          110 ----------QNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ  179 (415)
T ss_dssp             ----------EEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESS
T ss_pred             ----------eeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCC
Confidence                      134666777676666553               4466666554      799999998655555556888


Q ss_pred             cEEEEEEeeCCCCEEEEEeCCC---cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEE-EEecCCe--EEEEEecCCc
Q 006424          329 YVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGT--CHFYKASGND  402 (645)
Q Consensus       329 ~v~~l~~~p~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-~g~~dg~--i~iwd~~~~~  402 (645)
                      .+.+++|+| +++.|++++.++   .|++||+.+++...+..+...+.+++|+|+|+.|+ +++.+|.  |++||+.+..
T Consensus       180 ~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          180 PLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             CEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             cceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence            999999999 999999999875   99999999999888888888999999999999888 5665554  9999998765


Q ss_pred             eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC-CC--eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424          403 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI  479 (645)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~-dg--~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~  479 (645)
                      ..  .  +..    +...+.+++|+|+| ++|++++. ++  .|++||....... ....+...+.+++|+|+|++|+++
T Consensus       259 ~~--~--l~~----~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~  328 (415)
T 2hqs_A          259 IR--Q--VTD----GRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMV  328 (415)
T ss_dssp             EE--E--CCC----CSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEE
T ss_pred             EE--e--CcC----CCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEE
Confidence            42  1  121    24678999999998 67776665 45  6778887643321 222255678899999999999988


Q ss_pred             eCC---ccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCcccccccc-CCccCCC
Q 006424          480 GDD---CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET-APWIRDS  555 (645)
Q Consensus       480 s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~-~~~~~~~  555 (645)
                      +.+   +.|++||+.+++....            .....+..++|+|+|..|+..+.+.....+..|+.... ...+..+
T Consensus       329 ~~~~g~~~i~~~d~~~~~~~~l------------~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~  396 (415)
T 2hqs_A          329 SSNGGQQHIAKQDLATGGVQVL------------SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT  396 (415)
T ss_dssp             EECSSCEEEEEEETTTCCEEEC------------CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS
T ss_pred             ECcCCceEEEEEECCCCCEEEe------------cCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC
Confidence            864   6899999987743111            11124567888888888876665544344566665332 2356667


Q ss_pred             CccccCccccCCCC
Q 006424          556 ERFSLGSWFSNDGP  569 (645)
Q Consensus       556 ~~~~~~~~fs~dg~  569 (645)
                      ...+.+++|||.-.
T Consensus       397 ~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          397 DGQVKFPAWSPYLH  410 (415)
T ss_dssp             SSEEEEEEECCCCC
T ss_pred             CCCCcCCccccccc
Confidence            78889999998754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=1.2e-23  Score=207.63  Aligned_cols=215  Identities=11%  Similarity=0.034  Sum_probs=151.1

Q ss_pred             ccCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          199 HKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       199 H~~~V~~l~fspd----g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      |.+.|++++|+||    ++++++++.+  +++|++.+++.......        ...+.+..+...              
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~--------g~d~~V~~~~~s--------------  165 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGT--------LSDQQVEVMTFA--------------  165 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESS--------STTCEEEEEEEC--------------
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEeccc--------CCCCcEEEEEEC--------------
Confidence            4567889999999    8899998854  77888765433222110        011222111110              


Q ss_pred             ccCCCceeeccCccCeEEEEEcC---CC-eEEEEeCCCcEEEEecCCCeEEEEec-C---CCcEEEEEEeeCCCCEE---
Q 006424          275 IEESPLQELHGHKGDVLDLAWSN---SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-H---HNYVTCVQFNPIDDNYF---  343 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~---~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~---~~~v~~l~~~p~~~~~l---  343 (645)
                      .+++.+..+.+|...++.++|++   ++ .|++++.|++|+|||+.+++++.++. |   ...+.+++|+| ++.++   
T Consensus       166 ~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~  244 (356)
T 2w18_A          166 EDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVL  244 (356)
T ss_dssp             TTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEE
T ss_pred             CCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEe
Confidence            02455667788999999999998   44 89999999999999999999999885 3   33677889999 88876   


Q ss_pred             ---------EEEeCCCcEEEEeCCCCcEEEee------ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE
Q 006424          344 ---------ISGSIDGKVRIWGVCEKRVVDWA------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV  408 (645)
Q Consensus       344 ---------~s~s~dg~i~vwd~~~~~~~~~~------~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~  408 (645)
                               ++|+.|++|++||..+++.+...      +|...+.+..+  ++..+++|+.||+|++||+.+++....  
T Consensus       245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~t--  320 (356)
T 2w18_A          245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTAL--  320 (356)
T ss_dssp             C------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEE--
T ss_pred             ccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEE--
Confidence                     56888999999999998876532      44444443333  488999999999999999998875432  


Q ss_pred             eeccccccCCC-CeEEEEEcCCCCcEEEEEECCCeEEEEEC
Q 006424          409 DFHDRKKTSGN-KITGIQFSRDESQRIMITSEDSKLRILDG  448 (645)
Q Consensus       409 ~~~~~~~~~~~-~i~~i~~s~~g~~~l~~~s~dg~I~iwd~  448 (645)
                       +.+    |.. .+.+++|+|+| ++|++|+.|++|+|||.
T Consensus       321 -L~g----H~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          321 -LPP----VSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -ECC----C--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred             -ecC----CCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence             222    223 34568999998 89999999999999984

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=2.4e-23  Score=218.73  Aligned_cols=264  Identities=12%  Similarity=0.106  Sum_probs=200.2

Q ss_pred             cccccccCcEEEEEECC--------------CCCEEEEEeCC------CcEEEEEcCCCceeeeEecCCCCcccCCCCce
Q 006424          194 QEIQAHKGCIWTLKFSP--------------DGRYLASGGED------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK  253 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fsp--------------dg~~L~sgs~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (645)
                      .++.+|...+..+++++              .+..++.++.+      +.|++||+..                      
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g----------------------  168 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG----------------------  168 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS----------------------
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC----------------------
Confidence            34566666666666654              25566666654      7999999864                      


Q ss_pred             EEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCC---cEEEEecCCCeEEEEecCCCc
Q 006424          254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNY  329 (645)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~  329 (645)
                                              .....+.+|...|.+++|+|++ .|++++.++   .|++||+.+++......+...
T Consensus       169 ------------------------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~  224 (415)
T 2hqs_A          169 ------------------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH  224 (415)
T ss_dssp             ------------------------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred             ------------------------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCc
Confidence                                    2356777899999999999998 899998875   999999999988776678889


Q ss_pred             EEEEEEeeCCCCEEE-EEeCCCc--EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC--eEEEEEecCCce
Q 006424          330 VTCVQFNPIDDNYFI-SGSIDGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDL  403 (645)
Q Consensus       330 v~~l~~~p~~~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg--~i~iwd~~~~~~  403 (645)
                      +.+++|+| +++.|+ +++.++.  |++||+.+++...+..+...+.+++|+|+|++|++++. ++  .|.+||+.+...
T Consensus       225 ~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~  303 (415)
T 2hqs_A          225 NGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  303 (415)
T ss_dssp             EEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             ccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence            99999999 898777 6666654  99999999998888888899999999999999998876 45  677778776543


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC---CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe
Q 006424          404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      .  .+..      +...+.+++|+|+| .+|++++.+   ..|++||+...... ....+ ..+.+++|+|+|++|++++
T Consensus       304 ~--~l~~------~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~spdg~~l~~~s  372 (415)
T 2hqs_A          304 Q--RITW------EGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST-FLDETPSLAPNGTMVIYSS  372 (415)
T ss_dssp             E--ECCC------SSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCEE-ECCCS-SSCEEEEECTTSSEEEEEE
T ss_pred             E--EEec------CCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCEE-EecCC-CCcCCeEEcCCCCEEEEEE
Confidence            2  1111      23578899999998 677766654   58999998754332 22223 3889999999999999988


Q ss_pred             CCc---cEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc
Q 006424          481 DDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT  526 (645)
Q Consensus       481 ~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~  526 (645)
                      .++   .|++||+.+.....           ...+++.+..++|+|-..
T Consensus       373 ~~~~~~~l~~~d~~g~~~~~-----------l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          373 SQGMGSVLNLVSTDGRFKAR-----------LPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EETTEEEEEEEETTSCCEEE-----------CCCSSSEEEEEEECCCCC
T ss_pred             cCCCccEEEEEECCCCcEEE-----------eeCCCCCCcCCccccccc
Confidence            776   79999987552111           123457788999998754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=3.2e-23  Score=224.69  Aligned_cols=326  Identities=12%  Similarity=0.055  Sum_probs=228.9

Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec-c
Q 006424          207 KFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-G  285 (645)
Q Consensus       207 ~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~  285 (645)
                      .|+|++.++++++.|++|.+||..++                                             +.+..+. +
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~---------------------------------------------~~~~~i~~g  178 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSK---------------------------------------------KIVKVIDTG  178 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTC---------------------------------------------CEEEEEECS
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCc---------------------------------------------eEEEEEecC
Confidence            38899999999999999999999873                                             3455555 3


Q ss_pred             CccCeEEEEEcCCC-eEEEEeCCCcEEEEec--CCCeEEEEecCCCcEEEEEEeeC---CCCEEEEEe-CCCcEEEEeCC
Q 006424          286 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV--GCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGS-IDGKVRIWGVC  358 (645)
Q Consensus       286 h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~--~~~~~~~~~~~~~~v~~l~~~p~---~~~~l~s~s-~dg~i~vwd~~  358 (645)
                      |.  +..++|+|++ +|++++.|++|.+||+  .+++++..+.+...+..++|+|.   +++++++++ .+++|.+||..
T Consensus       179 ~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          179 YA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             TT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             cc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence            43  8899999998 8999999999999999  88999988888888999999982   577777777 48999999999


Q ss_pred             CCcEEEeecc------------CCCeEEEEEccCCCE-EEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          359 EKRVVDWADV------------RDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       359 ~~~~~~~~~~------------~~~v~~l~~sp~g~~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      +++++.....            ...+.++.++|++.. +++...+|.|.+||..+...... ....     +...+.++.
T Consensus       257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~-~~i~-----~~~~~~~~~  330 (543)
T 1nir_A          257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV-TSIG-----AAPFLHDGG  330 (543)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE-EEEE-----CCSSCCCEE
T ss_pred             ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee-EEec-----cCcCccCce
Confidence            9887664322            236889999997765 45566789999999987553221 1111     135677899


Q ss_pred             EcCCCCcEEEEEECCCeEEEEECCccee--eEee--cCCCCCeEEEEEecC-CCEEEEEe-CCccEEEEeCCCCCcCCCc
Q 006424          426 FSRDESQRIMITSEDSKLRILDGVDVIH--KFKG--LPKSGSQMSASFTTT-GKHIISIG-DDCRVYVWNYDELCFPSSK  499 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg~I~iwd~~~~~~--~~~~--~~~~~~i~~v~~sp~-~~~l~t~s-~dg~I~iwd~~~~~~~~~~  499 (645)
                      |+|+|..+++++..+++|.+||..+...  .+..  ..|.+....+ ++|+ +.+++++. .|++|.+||+++...+.  
T Consensus       331 ~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~--  407 (543)
T 1nir_A          331 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ--  407 (543)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT--
T ss_pred             ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch--
Confidence            9999843444555689999999875433  3332  1244444443 5787 66667765 58999999998732110  


Q ss_pred             ccCCcceeeeeecCCcEEEEecCCCCccccccCCCC----ccccCccccccccCCc-----------cCCCCccccCccc
Q 006424          500 QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS----LRDCSQKWDNLETAPW-----------IRDSERFSLGSWF  564 (645)
Q Consensus       500 ~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~----~~~~~~~w~~~~~~~~-----------~~~~~~~~~~~~f  564 (645)
                      +.......+.. +.+..+.++++|++..||......    ....+.+|+.......           +..+...+..+.|
T Consensus       408 ~~~~~v~~l~~-~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  486 (543)
T 1nir_A          408 YAWKKVAELQG-QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY  486 (543)
T ss_dssp             TBTSEEEEEEC-SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE
T ss_pred             hcCeEEEEEEc-CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccC
Confidence            00011111111 223456788899998888665211    2345667776433322           1344677889999


Q ss_pred             cCCCCCCcCCCC----CCCcCCCCCCccC
Q 006424          565 SNDGPCRGSATW----PAEKLPLWDVTID  589 (645)
Q Consensus       565 s~dg~~l~s~s~----~d~~i~iWd~~~~  589 (645)
                      +|||+.+..+.|    .++.|.|||..++
T Consensus       487 ~~~g~~~~~s~~~~~~~~~~i~v~D~~t~  515 (543)
T 1nir_A          487 NKRGDEVWFSVWNGKNDSSALVVVDDKTL  515 (543)
T ss_dssp             CSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             CCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence            999998875543    3689999999998

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=1.9e-23  Score=245.54  Aligned_cols=360  Identities=11%  Similarity=-0.007  Sum_probs=247.7

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      +.+.+|.+.+.++.|+++ .++++++.||.++||.+...                                         
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~-----------------------------------------  234 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLD-----------------------------------------  234 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETT-----------------------------------------
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCC-----------------------------------------
Confidence            445789999999999998 67778888999999987541                                         


Q ss_pred             eccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec------------CCCcEEEEEEe-eCC
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD------------HHNYVTCVQFN-PID  339 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~------------~~~~v~~l~~~-p~~  339 (645)
                         +.....+..|. .+...+|+|+| .|+++ .++.|.+||+...... .+.            |...+.+++|+ | +
T Consensus       235 ---g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~p-d  307 (1045)
T 1k32_A          235 ---GKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPL-D  307 (1045)
T ss_dssp             ---SCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEEC-G
T ss_pred             ---CCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCC-C
Confidence               22334455454 46677999998 56666 5899999999554433 332            23468999999 9 9


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcEEEeeccCC-CeEEEEEccCCCEEEEEecCCeEE-EEEecCCceeeeEEeeccccccC
Q 006424          340 DNYFISGSIDGKVRIWGVCEKRVVDWADVRD-VISAICYIPDGKGFIVGSITGTCH-FYKASGNDLKLEKVDFHDRKKTS  417 (645)
Q Consensus       340 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~v~~l~~sp~g~~l~~g~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~  417 (645)
                      ++.+++++ ++.|++|++.++....+..+.. .+..++|+ +|+.++.++.++.+. +||+.+.....  +  .    .+
T Consensus       308 G~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~--l--~----~~  377 (1045)
T 1k32_A          308 GDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK--F--E----EN  377 (1045)
T ss_dssp             GGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE--C--C----CC
T ss_pred             CCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE--e--c----CC
Confidence            99888888 7899999999988888777777 89999999 999999999888888 88987664321  1  1    23


Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC----------ccEEE
Q 006424          418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD----------CRVYV  487 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d----------g~I~i  487 (645)
                      ...+..++|+|+| ++|++++.++.|++||+...........|...+.+++|||||++|++++.+          +.|++
T Consensus       378 ~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l  456 (1045)
T 1k32_A          378 LGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  456 (1045)
T ss_dssp             CCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             ccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence            4678999999998 899999999999999987544333333477788999999999999988764          49999


Q ss_pred             EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccC---------------------------
Q 006424          488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCS---------------------------  540 (645)
Q Consensus       488 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~---------------------------  540 (645)
                      ||+.+++......           +......++|+|||..|+..+.+......                           
T Consensus       457 ~d~~~g~~~~l~~-----------~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (1045)
T 1k32_A          457 YDMEGRKIFAATT-----------ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP  525 (1045)
T ss_dssp             EETTTTEEEECSC-----------SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred             EECCCCcEEEeeC-----------CCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCc
Confidence            9998764211111           12223445566666555533321110000                           


Q ss_pred             ------------cccccc---ccCCccCCCCccccCccccCCCCCCcC------------CCCCCCcCCCCCCccCCCCC
Q 006424          541 ------------QKWDNL---ETAPWIRDSERFSLGSWFSNDGPCRGS------------ATWPAEKLPLWDVTIDSDGY  593 (645)
Q Consensus       541 ------------~~w~~~---~~~~~~~~~~~~~~~~~fs~dg~~l~s------------~s~~d~~i~iWd~~~~~~~~  593 (645)
                                  ..|+..   .....+..+...+.+++|+|||+.+++            ......+|.+||+.+++   
T Consensus       526 ~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~---  602 (1045)
T 1k32_A          526 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---  602 (1045)
T ss_dssp             GGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---
T ss_pred             cccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCc---
Confidence                        001110   011122334455678899999985653            11114477888888772   


Q ss_pred             cCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424          594 CQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       594 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                              .....  .......+++ ||+.|++++.| .|++|++.
T Consensus       603 --------~~~l~--~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~  636 (1045)
T 1k32_A          603 --------VTEVK--NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPL  636 (1045)
T ss_dssp             --------EEEEE--EEEEEEEECT-TSCEEEEEETT-SCEEEEES
T ss_pred             --------EEEee--cCcceEEECC-CCCEEEEEcCC-cEEEEeCc
Confidence                    11111  1122344555 89999999877 79999974

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=1.4e-22  Score=238.12  Aligned_cols=367  Identities=11%  Similarity=0.061  Sum_probs=246.3

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCC------CcEEEEEcCCCce-----------------eeeEecCCCCcccCCC
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGED------GVVRIWHVTSVAA-----------------SCKSFTDDGGFGSNAK  250 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~D------g~I~iwd~~~~~~-----------------~~~~~~~~~~~~~~~~  250 (645)
                      +.|.+|.+.|.+++|||||++||+++.+      ..|++|++.++..                 ....|++++.++....
T Consensus        46 ~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~  125 (1045)
T 1k32_A           46 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  125 (1045)
T ss_dssp             EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEEC
Confidence            4567899999999999999999988654      3799999876532                 2234555554322111


Q ss_pred             C-------ceEEecccCCCcceeecC---------------------------------CCcee-ccCCCceeeccCccC
Q 006424          251 E-------GKIKFGKKKSSHVPVVIP---------------------------------DEVFQ-IEESPLQELHGHKGD  289 (645)
Q Consensus       251 ~-------~~~~~~~~~~~~~~~~~~---------------------------------~~~~~-~~~~~~~~l~~h~~~  289 (645)
                      .       ..+..+............                                 ..+|. ........+.+|...
T Consensus       126 ~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~  205 (1045)
T 1k32_A          126 AMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTH  205 (1045)
T ss_dssp             TTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSC
T ss_pred             CcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCc
Confidence            1       112211111111000000                                 01111 111334556789999


Q ss_pred             eEEEEEcCCCeEEEEeCCCcEEEEecCC-CeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-
Q 006424          290 VLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-  367 (645)
Q Consensus       290 V~~l~~s~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-  367 (645)
                      +.++.|+++..+++++.|+.+.+|.+.. +.....+.+...+...+|+| +++.++++. ++.|++||+....+..+.. 
T Consensus       206 v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~Sp-DG~~la~~~-~~~i~~~d~~~~~l~~l~~~  283 (1045)
T 1k32_A          206 VSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNT-DGRRILFSK-GGSIYIFNPDTEKIEKIEIG  283 (1045)
T ss_dssp             CEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEE-SSSCEEEEE-TTEEEEECTTTCCEEECCCC
T ss_pred             ccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcC-CCCEEEEEe-CCEEEEecCCceEeeeeccC
Confidence            9999999886677888899999998753 33344444333467789999 999888875 8999999996665554333 


Q ss_pred             ----------cCCCeEEEEEc-cCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC-CeEEEEEcCCCCcEEE
Q 006424          368 ----------VRDVISAICYI-PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN-KITGIQFSRDESQRIM  435 (645)
Q Consensus       368 ----------~~~~v~~l~~s-p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~s~~g~~~l~  435 (645)
                                +...+.+++|+ |+|+.+++++ ++.+.+|+..+.....    ...    +.. .+..++|+ +| ..++
T Consensus       284 ~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~----~~~----~~~~~~~~~~~s-dg-~~l~  352 (1045)
T 1k32_A          284 DLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----VPE----PLRIRYVRRGGD-TK-VAFI  352 (1045)
T ss_dssp             CCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----CSC----CSCEEEEEECSS-SE-EEEE
T ss_pred             cccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE----ccC----CCcceEEeeeEc-CC-CeEE
Confidence                      23468999999 9999999887 8899999987654321    111    234 78899999 87 7888


Q ss_pred             EEECCCeEE-EEECCcce-eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecC
Q 006424          436 ITSEDSKLR-ILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE  513 (645)
Q Consensus       436 ~~s~dg~I~-iwd~~~~~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  513 (645)
                      .++.++.+. +||..... ..+.  .+...+..++|+|||++|++++.++.|++||+.+++....          .-.+.
T Consensus       353 ~~s~~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~----------~~~~~  420 (1045)
T 1k32_A          353 HGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI----------ERSRE  420 (1045)
T ss_dssp             EEETTEEEEEEEETTTCCEEECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE----------EECSS
T ss_pred             EEECCCceEEEEECCCCCceEec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe----------ccCCC
Confidence            888888898 99976432 2222  4677899999999999999999999999999987742111          11234


Q ss_pred             CcEEEEecCCCCccccccCCCC-------ccccCccccccccC-CccCCCCccccCccccCCCCCCcCCCCCCCcCCCCC
Q 006424          514 GVSVAVQWPGIGTEQKSLCSSS-------LRDCSQKWDNLETA-PWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD  585 (645)
Q Consensus       514 g~~~~v~~s~~~~~l~~~~~~~-------~~~~~~~w~~~~~~-~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd  585 (645)
                      +.+..++|+|||..|+....+.       ....+.+|+..... ..+..+...+.+++|+|||++++.++. ++..++|+
T Consensus       421 ~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~-~~~~~~~~  499 (1045)
T 1k32_A          421 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY-RSLDPSPD  499 (1045)
T ss_dssp             SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES-CCCCCEEC
T ss_pred             CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEec-ccCCcCcc
Confidence            5556788888888887554432       23456677664332 234455556777899999998887765 55666665


Q ss_pred             C
Q 006424          586 V  586 (645)
Q Consensus       586 ~  586 (645)
                      .
T Consensus       500 ~  500 (1045)
T 1k32_A          500 R  500 (1045)
T ss_dssp             S
T ss_pred             h
Confidence            4

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=6.1e-23  Score=232.80  Aligned_cols=344  Identities=10%  Similarity=0.040  Sum_probs=216.8

Q ss_pred             cCcEEEEEECCCCCEEEEEeC-CC-----cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          200 KGCIWTLKFSPDGRYLASGGE-DG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       200 ~~~V~~l~fspdg~~L~sgs~-Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      ...|.+++|||||++|++++. ||     .|++||+.++.............    ....+..                 
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~----~~~~~~~-----------------   94 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLP----GTETLSD-----------------   94 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-----------------------------
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhccc----ccccccc-----------------
Confidence            457999999999999999998 88     89999998865432221110000    0000000                 


Q ss_pred             eccCCCceeec--cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC---eEEEEecCCCcEEEEEEeeCCCCEEEEEe
Q 006424          274 QIEESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDNYFISGS  347 (645)
Q Consensus       274 ~~~~~~~~~l~--~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~---~~~~~~~~~~~v~~l~~~p~~~~~l~s~s  347 (645)
                        +....+...  .....|.+++|+|+| +|++++. +.|++||+.++   .......+...+.+++|+| +++.|++++
T Consensus        95 --~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~  170 (741)
T 2ecf_A           95 --EEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR  170 (741)
T ss_dssp             --------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE
T ss_pred             --hhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe
Confidence              000000000  012458889999998 6777776 99999999988   6555556778899999999 999999988


Q ss_pred             CCCcEEEEeCCCCcEEEeeccCCC-----------------eEEEEEccCCCEEEEEecCC-------------------
Q 006424          348 IDGKVRIWGVCEKRVVDWADVRDV-----------------ISAICYIPDGKGFIVGSITG-------------------  391 (645)
Q Consensus       348 ~dg~i~vwd~~~~~~~~~~~~~~~-----------------v~~l~~sp~g~~l~~g~~dg-------------------  391 (645)
                       ++.|++||+.+++...+......                 +.++.|+|||++|++++.|+                   
T Consensus       171 -~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~  249 (741)
T 2ecf_A          171 -GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI  249 (741)
T ss_dssp             -TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred             -CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence             56899999999887765443222                 47899999999999988765                   


Q ss_pred             --------------eEEEEEecC-CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC-----CCeEEEEECCcc
Q 006424          392 --------------TCHFYKASG-NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-----DSKLRILDGVDV  451 (645)
Q Consensus       392 --------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~-----dg~I~iwd~~~~  451 (645)
                                    .|.+||+.+ .....  +...   ..+...+..++| ||| ++|++++.     +..|++||..+.
T Consensus       250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~--~~~~---~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g  322 (741)
T 2ecf_A          250 EQRYPAAGDANVQVKLGVISPAEQAQTQW--IDLG---KEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASN  322 (741)
T ss_dssp             EEECCBTTSCCCEEEEEEECSSTTCCCEE--ECCC---SCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTC
T ss_pred             EeecCCCCCCCCeeEEEEEECCCCCceEE--ecCC---CCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCC
Confidence                          788888877 55322  1111   123467899999 998 66665543     578999998743


Q ss_pred             e--eeEeecCCCC---CeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEE-ecCCCC
Q 006424          452 I--HKFKGLPKSG---SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV-QWPGIG  525 (645)
Q Consensus       452 ~--~~~~~~~~~~---~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v-~~s~~~  525 (645)
                      .  ..+... ...   .+..++|+|||+++++++.||.++||.++.......          ...++..+..+ .|+|++
T Consensus       323 ~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~----------l~~~~~~v~~~~~~s~dg  391 (741)
T 2ecf_A          323 QQRVLAHET-SPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAA----------LTHGNWSVDELLAVDEKA  391 (741)
T ss_dssp             CEEEEEEEE-CSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEE----------SCCSSSCEEEEEEEETTT
T ss_pred             ceEEEEEcC-CCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeee----------eeecceEEEeEeEEeCCC
Confidence            3  222221 112   346889999999999999999888887762211100          01112334444 477777


Q ss_pred             ccccccCCCCccccCccccccc--c-CCccCCCCccccCccccCCCCCCcCCCCC-C--CcCCCCCCcc
Q 006424          526 TEQKSLCSSSLRDCSQKWDNLE--T-APWIRDSERFSLGSWFSNDGPCRGSATWP-A--EKLPLWDVTI  588 (645)
Q Consensus       526 ~~l~~~~~~~~~~~~~~w~~~~--~-~~~~~~~~~~~~~~~fs~dg~~l~s~s~~-d--~~i~iWd~~~  588 (645)
                      ..|+....+.......+|....  . ...+.. ...+..++|||||+.++..... .  ..+.+|+...
T Consensus       392 ~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~  459 (741)
T 2ecf_A          392 GLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG  459 (741)
T ss_dssp             TEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred             CEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence            6665433332222344554321  1 112222 3445688999999977643221 1  3566676543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=3.7e-21  Score=208.44  Aligned_cols=302  Identities=10%  Similarity=0.052  Sum_probs=208.7

Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEc--CCCceeeeEecCCCCcccCCCCceEEecccCCCcceeec
Q 006424          191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV--TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI  268 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (645)
                      .+.+++..+.. +.+++|+|||++|++++.|++|++||+  .++                                    
T Consensus       170 ~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~------------------------------------  212 (543)
T 1nir_A          170 KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP------------------------------------  212 (543)
T ss_dssp             CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC------------------------------------
T ss_pred             eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC------------------------------------
Confidence            34556663333 899999999999999999999999999  542                                    


Q ss_pred             CCCceeccCCCceeeccCccCeEEEEEcC----CC-eEEEEe-CCCcEEEEecCCCeEEEEecC------------CCcE
Q 006424          269 PDEVFQIEESPLQELHGHKGDVLDLAWSN----SN-YLLSCS-MDKTVRMWQVGCNQCLNVFDH------------HNYV  330 (645)
Q Consensus       269 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~----~~-~l~s~s-~dg~I~iwd~~~~~~~~~~~~------------~~~v  330 (645)
                               +.+..+. +...+..++|+|    ++ ++++++ .+++|.+||..+++++..+..            ...+
T Consensus       213 ---------~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v  282 (543)
T 1nir_A          213 ---------TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV  282 (543)
T ss_dssp             ---------EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             ---------cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCce
Confidence                     2344454 345679999999    87 777777 489999999999998887742            2268


Q ss_pred             EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE--eeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeE
Q 006424          331 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEK  407 (645)
Q Consensus       331 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~  407 (645)
                      .++.++|..+.++++...++.|.+||+.+.+...  ...+...+..+.|+|+|+++++++ .+++|.+||..+.+... .
T Consensus       283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~-~  361 (543)
T 1nir_A          283 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA-L  361 (543)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE-E
T ss_pred             EEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE-e
Confidence            8999999444566777788999999998754322  445667788999999999877665 58899999999876533 2


Q ss_pred             EeeccccccCCCCeEEEEEcCCCCcEEEEEE-CCCeEEEEECCc-------ceeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424          408 VDFHDRKKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVD-------VIHKFKGLPKSGSQMSASFTTTGKHIISI  479 (645)
Q Consensus       408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s-~dg~I~iwd~~~-------~~~~~~~~~~~~~i~~v~~sp~~~~l~t~  479 (645)
                      +..  ....|......+ ++|++...++++. .|++|.+||...       ....-....+...+..+.++|++++|+++
T Consensus       362 i~~--g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~  438 (543)
T 1nir_A          362 VDV--GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD  438 (543)
T ss_dssp             EEC--SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred             ecc--CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence            222  112233333333 4677546677765 689999999764       33223333366677889999999999998


Q ss_pred             e-------CCccEEEEeCCCCCcCCCcccCCcceee-eeecCCcEEEEecCCCCcccccc--CCCCccccCccccc
Q 006424          480 G-------DDCRVYVWNYDELCFPSSKQKNSVRSCE-HFFSEGVSVAVQWPGIGTEQKSL--CSSSLRDCSQKWDN  545 (645)
Q Consensus       480 s-------~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~v~~s~~~~~l~~~--~~~~~~~~~~~w~~  545 (645)
                      +       .+++|.+||+.+++.....-  .+.... .-.+...+..+.|+|+|..||..  +.+.....+.+|+.
T Consensus       439 ~~~~~~~~~~~~v~v~d~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          439 TTFNPDARISQSVAVFDLKNLDAKYQVL--PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             CTTCSSHHHHTCEEEEETTCTTSCCEEE--CHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred             cCCCCCcccCceEEEEECCCCCCCeEEe--echhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence            7       27799999999886431110  000000 00123457788899999988854  22222344556665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=4.7e-22  Score=224.19  Aligned_cols=284  Identities=11%  Similarity=0.022  Sum_probs=193.9

Q ss_pred             ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-----Cc
Q 006424          287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KR  361 (645)
Q Consensus       287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-----~~  361 (645)
                      ...|.+++|+|++.++.+ .++.|++||+.+++......+...+.+++|+| +++.|+++ .|+.|++||+.+     ++
T Consensus        81 ~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           81 AFPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             -CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             ccCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            357999999999755554 45999999999998877777778899999999 99999885 579999999998     77


Q ss_pred             EEEeeccCCC---------------eEEEEEccCCCEEEEEe---------------------------------cCCeE
Q 006424          362 VVDWADVRDV---------------ISAICYIPDGKGFIVGS---------------------------------ITGTC  393 (645)
Q Consensus       362 ~~~~~~~~~~---------------v~~l~~sp~g~~l~~g~---------------------------------~dg~i  393 (645)
                      ...+......               +.++.|+|||++|++++                                 .++.|
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            6664333222               58999999999999987                                 34679


Q ss_pred             EEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC-----eEEEEECCcc--eeeEeecCCCC---C
Q 006424          394 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS-----KLRILDGVDV--IHKFKGLPKSG---S  463 (645)
Q Consensus       394 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg-----~I~iwd~~~~--~~~~~~~~~~~---~  463 (645)
                      .+||+.+.......  .   ...+...+.+++|+|+| +.|++++.++     .|++||..+.  ...+....+..   .
T Consensus       238 ~~~d~~~~~~~~~~--~---~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          238 GIYHLATGKTVYLQ--T---GEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP  311 (706)
T ss_dssp             EEEETTTTEEEECC--C---CSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred             EEEECCCCceEeec--c---CCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence            99999876542211  1   11234678999999998 7787777665     9999998754  22222111222   3


Q ss_pred             eEEEEEec--CCCEEEEEeCCccEEEEeCC-CCCcCCCcccCCcceeeeeecCCcEEE-EecCCCCccccccCCCCc--c
Q 006424          464 QMSASFTT--TGKHIISIGDDCRVYVWNYD-ELCFPSSKQKNSVRSCEHFFSEGVSVA-VQWPGIGTEQKSLCSSSL--R  537 (645)
Q Consensus       464 i~~v~~sp--~~~~l~t~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~-v~~s~~~~~l~~~~~~~~--~  537 (645)
                      +..+.|+|  ||+++++++.||.++||+++ ++......          ..+...+.. ++|+|++..|+..+.+..  .
T Consensus       312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l----------~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~  381 (706)
T 2z3z_A          312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV----------TKGEWEVTNFAGFDPKGTRLYFESTEASPLE  381 (706)
T ss_dssp             CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC----------CCSSSCEEEEEEECTTSSEEEEEESSSCTTC
T ss_pred             cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec----------CCCCeEEEeeeEEcCCCCEEEEEecCCCCce
Confidence            46789999  99999999999999999876 22111000          011223433 678888877765444322  1


Q ss_pred             ccCccccccccCCccCCCCccccCccccCCCCCCcCCCC-CC--CcCCCCCCccC
Q 006424          538 DCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATW-PA--EKLPLWDVTID  589 (645)
Q Consensus       538 ~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~-~d--~~i~iWd~~~~  589 (645)
                      ..+..|+..........+...+.+++|||||++++.... +.  ..|.+||+.++
T Consensus       382 ~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          382 RHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             BEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             EEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence            233344432322222234455678899999997765422 11  46899998876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=6.6e-21  Score=194.28  Aligned_cols=249  Identities=12%  Similarity=0.154  Sum_probs=175.3

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCC-CcEEEEEcC--CCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGED-GVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~D-g~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      .|...+.+++|+|+|++|++++.+ +.|.+|++.  ++..                                        
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~----------------------------------------   74 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------------------------------------   74 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------------------------------------
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce----------------------------------------
Confidence            477789999999999999988886 999999997  3211                                        


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC-eEEEEe-CCCcEEEEec---CCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-C
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQV---GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-I  348 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s-~dg~I~iwd~---~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~  348 (645)
                         ..+..+..+. .+.+++|+|++ ++++++ .++.|.+||+   ...+.+..+.....+.+++|+| +++++++++ .
T Consensus        75 ---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~  149 (343)
T 1ri6_A           75 ---TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALK  149 (343)
T ss_dssp             ---EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGG
T ss_pred             ---eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCC
Confidence               1123333333 78899999997 566555 4889999999   4445555666666789999999 888888777 8


Q ss_pred             CCcEEEEeCCC-CcEEE-----e-eccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecC--Cceeee-EEeeccccccC
Q 006424          349 DGKVRIWGVCE-KRVVD-----W-ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG--NDLKLE-KVDFHDRKKTS  417 (645)
Q Consensus       349 dg~i~vwd~~~-~~~~~-----~-~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~--~~~~~~-~~~~~~~~~~~  417 (645)
                      ++.|++||+.+ ++...     . ......+..++|+|+|+++++++ .++.+.+|++..  ...... ...........
T Consensus       150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~  229 (343)
T 1ri6_A          150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD  229 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred             CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence            89999999987 65432     1 22345788999999999776665 789999999964  222111 11111100011


Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc---ceeeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCC
Q 006424          418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYD  491 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~  491 (645)
                      ...+.+++|+|+|..+++++..++.|.+||+..   .............+.+++|+|+|++|++++ .++.|.+|+++
T Consensus       230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          230 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            245778999999843444555799999999862   122222211223488999999999988887 68999999665

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=9.8e-22  Score=222.22  Aligned_cols=310  Identities=13%  Similarity=0.105  Sum_probs=202.6

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      .+.+++|+|||+++++ +.||+|++||+.++                                             +...
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g---------------------------------------------~~~~   51 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETN---------------------------------------------TSTV   51 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC---------------------------------------------CCEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCC---------------------------------------------cEEE
Confidence            4678999999998776 78999999999873                                             3334


Q ss_pred             eeccCcc---CeEEEEEcCCC-eEEEEeCC---------CcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEE
Q 006424          282 ELHGHKG---DVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       282 ~l~~h~~---~V~~l~~s~~~-~l~s~s~d---------g~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s  345 (645)
                      .+.+|..   .|.+++|+||| +|++++.+         +.+.+||+.+++......   +...+..++|+| +++.|++
T Consensus        52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP-dG~~la~  130 (723)
T 1xfd_A           52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIF  130 (723)
T ss_dssp             EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEE
T ss_pred             EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECC-CCCEEEE
Confidence            4555554   49999999998 78888764         788899999887632222   344588999999 9999999


Q ss_pred             EeCCCcEEEEeCCCCcEEEeecc-CCC------------------eEEEEEccCCCEEEEEecCC---------------
Q 006424          346 GSIDGKVRIWGVCEKRVVDWADV-RDV------------------ISAICYIPDGKGFIVGSITG---------------  391 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~~~~~~~~-~~~------------------v~~l~~sp~g~~l~~g~~dg---------------  391 (645)
                      ++. +.|++||+.+++...+... ...                  +.+++|+|||+.|++++.++               
T Consensus       131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~  209 (723)
T 1xfd_A          131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI  209 (723)
T ss_dssp             EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred             EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence            885 7999999998876654432 222                  37899999999999987553               


Q ss_pred             -------------------eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC----CCeEEEEEC
Q 006424          392 -------------------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE----DSKLRILDG  448 (645)
Q Consensus       392 -------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~----dg~I~iwd~  448 (645)
                                         .|++||+.+..... .+..+.....+...+.+++|+||| +++++.+.    +..|++||.
T Consensus       210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~-~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~  287 (723)
T 1xfd_A          210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL-EMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDA  287 (723)
T ss_dssp             SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE-ECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEET
T ss_pred             CCcceeccCCCCCCCCCeeEEEEEECCCCceeE-EeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeC
Confidence                               78889987765321 111111111123568899999998 67766543    368999997


Q ss_pred             Ccce--eeEeecCCCCCe----EEEEEecCCCEEEE--EeCCc------cEEEEe-CCCCC---cCCCcccCCcceeeee
Q 006424          449 VDVI--HKFKGLPKSGSQ----MSASFTTTGKHIIS--IGDDC------RVYVWN-YDELC---FPSSKQKNSVRSCEHF  510 (645)
Q Consensus       449 ~~~~--~~~~~~~~~~~i----~~v~~sp~~~~l~t--~s~dg------~I~iwd-~~~~~---~~~~~~~~~~~~~~~~  510 (645)
                      ....  ..+... +...+    ..++|+|||+.|+.  +..++      .|++|| ..++.   ......          
T Consensus       288 ~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~----------  356 (723)
T 1xfd_A          288 TTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS----------  356 (723)
T ss_dssp             TTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC----------
T ss_pred             CCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec----------
Confidence            6433  222221 23333    37899999997775  44566      577777 34432   111110          


Q ss_pred             ecCCcEE-EEecCCCCccccccCCCCccccCcccccccc----CCccCC---CCccccCccccCCCCCCcC
Q 006424          511 FSEGVSV-AVQWPGIGTEQKSLCSSSLRDCSQKWDNLET----APWIRD---SERFSLGSWFSNDGPCRGS  573 (645)
Q Consensus       511 ~~~g~~~-~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~----~~~~~~---~~~~~~~~~fs~dg~~l~s  573 (645)
                       .+..+. .++|+||+..|+....+.......+|.....    ...+..   +...+..++|||||++++.
T Consensus       357 -~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~  426 (723)
T 1xfd_A          357 -GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL  426 (723)
T ss_dssp             -SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred             -CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence             111222 3578888877765444322233445554211    111222   3455778899999996654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=6.6e-21  Score=193.69  Aligned_cols=237  Identities=11%  Similarity=0.117  Sum_probs=168.4

Q ss_pred             EEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec
Q 006424          206 LKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  284 (645)
Q Consensus       206 l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  284 (645)
                      ..|.++++ .+++++.++.|.+||..++                                             +....+.
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~---------------------------------------------~~~~~~~   37 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTL---------------------------------------------EILNQIT   37 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTC---------------------------------------------CEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCccc---------------------------------------------ceeeeEE
Confidence            34666555 5778888999999999873                                             2334444


Q ss_pred             cCccCeEEEEEcCCC-eEEEEeC-CCcEEEEecCCCeE-EEEecCCCcEEE-EEEeeCCCCEEEEEeCCC---cEEEEeC
Q 006424          285 GHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQC-LNVFDHHNYVTC-VQFNPIDDNYFISGSIDG---KVRIWGV  357 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~-~l~s~s~-dg~I~iwd~~~~~~-~~~~~~~~~v~~-l~~~p~~~~~l~s~s~dg---~i~vwd~  357 (645)
                      .+...+ +++|+|++ ++++++. ++.|.+||+.+++. ...+........ ++|+| ++++++++..++   .|.+||+
T Consensus        38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~  115 (331)
T 3u4y_A           38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSF  115 (331)
T ss_dssp             CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEET
T ss_pred             ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEEC
Confidence            445556 99999998 5666555 89999999999887 666654444444 99999 999888555553   8999999


Q ss_pred             CCCcEEEeeccCCCeEEEEEccCCCEEEEE-ecCCe-EEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          358 CEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       358 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      .+++............+++|+|+|++++++ ..++. +.+|++.......... ..  ..........++|+|+|..+++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~--~~~~~~~~~~~~~spdg~~l~v  192 (331)
T 3u4y_A          116 LKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QE--FISGGTRPFNITFTPDGNFAFV  192 (331)
T ss_dssp             TTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EE--EECSSSSEEEEEECTTSSEEEE
T ss_pred             CCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Cc--cccCCCCccceEECCCCCEEEE
Confidence            999888777777778999999999866655 45578 9999998544322211 00  0112356789999999844555


Q ss_pred             EEECCCeEEEEECCccee---eEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCC
Q 006424          436 ITSEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  493 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~~~~---~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~  493 (645)
                      ++..++.|++||......   ..... ....+..++|+|+|++|+.++ .++.|.+||+.++
T Consensus       193 ~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          193 ANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             EETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             EeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            566789999999864322   22222 346678899999999776665 5789999999876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=8.7e-20  Score=186.95  Aligned_cols=273  Identities=9%  Similarity=0.060  Sum_probs=196.3

Q ss_pred             ccCcEEEEEECCCCCEEEEEeC-------CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGE-------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~-------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ....+..++|+|+|++|++++.       ++.|.+||..++.                                      
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~--------------------------------------   80 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE--------------------------------------   80 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC--------------------------------------
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe--------------------------------------
Confidence            4456889999999998888774       5689999988732                                      


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEecCCC----------cEEEEEEeeCC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHN----------YVTCVQFNPID  339 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~----------~v~~l~~~p~~  339 (645)
                             .+..+.. ...+..++|++++ ++ +++..++.|.+||..+++.+..+....          .+.+++|+| +
T Consensus        81 -------~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d  151 (353)
T 3vgz_A           81 -------VTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-A  151 (353)
T ss_dssp             -------EEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-T
T ss_pred             -------EEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-C
Confidence                   2233332 3346778999987 44 455667999999999999887775321          278999999 8


Q ss_pred             CCEEEEEe--CCCcEEEEeCCCCcEEEeec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424          340 DNYFISGS--IDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT  416 (645)
Q Consensus       340 ~~~l~s~s--~dg~i~vwd~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  416 (645)
                      ++.+++++  .++.|.+||..+++...... +...+.+++|+|+|+++++++.++.+.+||+.+...... +...  ...
T Consensus       152 g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~-~~~~--~~~  228 (353)
T 3vgz_A          152 TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR-KKLL--DDG  228 (353)
T ss_dssp             TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE-EECC--CSS
T ss_pred             CCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE-EEcC--CCC
Confidence            88777766  47889999999988877655 566689999999999999999999999999987765322 2221  111


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCCc
Q 006424          417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF  495 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~~  495 (645)
                      +...+.+++|+|+|..++++...++.|.+||..+...........  ...++|+|+++++++++ .++.|.+||..+++.
T Consensus       229 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          229 KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            235678899999984344444456999999986443322221121  25689999999766655 689999999987632


Q ss_pred             CCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCC
Q 006424          496 PSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS  534 (645)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~  534 (645)
                      ..           .+...+....++|+|++..|+.....
T Consensus       307 ~~-----------~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          307 VK-----------TFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EE-----------EEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             EE-----------EEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            11           12223456788999999977755543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=8.8e-21  Score=188.61  Aligned_cols=235  Identities=14%  Similarity=0.100  Sum_probs=167.7

Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC-CeEEEEec-C-CCcEEEEEEeeCCCCEEEEEeC--CC--cE
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVFD-H-HNYVTCVQFNPIDDNYFISGSI--DG--KV  352 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~-~~~~~~~~-~-~~~v~~l~~~p~~~~~l~s~s~--dg--~i  352 (645)
                      ..+..|...|.+++|+|++ +|++++ ++.|++||+.+ ++...... + ...+.+++|+| +++++++++.  ++  .|
T Consensus        35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l  112 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAI  112 (297)
T ss_dssp             EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEE
T ss_pred             eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceE
Confidence            3455688899999999998 666665 88999999998 77766654 3 36789999999 9999999983  33  45


Q ss_pred             EEEeCCCCcEEEeeccCCCeEEEEEccCCCEEE-EEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424          353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                      ..|++.++....+..+. .+..++|+|+++.++ ++..++.+.+|++.........+  .    .+...+.++.|+|+| 
T Consensus       113 ~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~--~----~~~~~~~~~~~s~dg-  184 (297)
T 2ojh_A          113 YLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL--T----HGEGRNDGPDYSPDG-  184 (297)
T ss_dssp             EEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC--C----CSSSCEEEEEECTTS-
T ss_pred             EEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc--c----cCCCccccceECCCC-
Confidence            55556666655544443 488999999999887 67889999999976433222211  1    124678999999998 


Q ss_pred             cEEEEEE-CCCeEEEEECC-cceeeEeecCCCCCeEEEEEecCCCEEEEEeCC-----------ccEEEEeCCCCCcCCC
Q 006424          432 QRIMITS-EDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-----------CRVYVWNYDELCFPSS  498 (645)
Q Consensus       432 ~~l~~~s-~dg~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d-----------g~I~iwd~~~~~~~~~  498 (645)
                      .+++.++ .++.+++|++. ..........+...+..++|+|++++|++++.+           +.|++||+.+++..  
T Consensus       185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--  262 (297)
T 2ojh_A          185 RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE--  262 (297)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE--
T ss_pred             CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce--
Confidence            5555554 68999999864 222222333356678899999999999988866           57999999876321  


Q ss_pred             cccCCcceeee-eecCCcEEEEecCCCCccccccCCC
Q 006424          499 KQKNSVRSCEH-FFSEGVSVAVQWPGIGTEQKSLCSS  534 (645)
Q Consensus       499 ~~~~~~~~~~~-~~~~g~~~~v~~s~~~~~l~~~~~~  534 (645)
                             .... ..+.+.+..++|+|++..|+..+.+
T Consensus       263 -------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          263 -------TLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             -------EEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             -------eeeccCCCCcccccceECCCCCEEEEEEec
Confidence                   1111 1234556678899999888765553

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=1.6e-19  Score=183.38  Aligned_cols=247  Identities=10%  Similarity=0.094  Sum_probs=174.2

Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          195 EIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspdg~~L~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      .+..+...+ +++|+|+|++|++++. ++.|.+||..++                                         
T Consensus        35 ~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-----------------------------------------   72 (331)
T 3u4y_A           35 QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE-----------------------------------------   72 (331)
T ss_dssp             EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS-----------------------------------------
T ss_pred             eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC-----------------------------------------
Confidence            344455666 9999999997766665 899999999873                                         


Q ss_pred             eccCCC-ceeeccCccCeEEEEEcCCC-eEEEEeCCC---cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEE-EEEe
Q 006424          274 QIEESP-LQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGS  347 (645)
Q Consensus       274 ~~~~~~-~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l-~s~s  347 (645)
                          .. ...+..+..+..+++|+|++ +++++..++   .|.+||+.+++.+..+.......+++|+| +++++ ++..
T Consensus        73 ----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~  147 (331)
T 3u4y_A           73 ----PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDR  147 (331)
T ss_dssp             ----SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEE
T ss_pred             ----ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEec
Confidence                22 44555566666669999998 666444442   89999999999988888777789999999 88754 4555


Q ss_pred             CCCc-EEEEeCCCCcE-----EEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          348 IDGK-VRIWGVCEKRV-----VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       348 ~dg~-i~vwd~~~~~~-----~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      .++. |.+|++.....     .........+..++|+|+|+++++++ .++.|.+||+.+.........+..     ...
T Consensus       148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~  222 (331)
T 3u4y_A          148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-----NNL  222 (331)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-----SSC
T ss_pred             CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-----CCC
Confidence            6688 99999875322     22334456689999999999766655 688999999987765111111221     256


Q ss_pred             eEEEEEcCCCCcEEE-EEECCCeEEEEECCccee----eEeec--CCC---CCeEEEEEecCCCEEEEEe-CCccEEEEe
Q 006424          421 ITGIQFSRDESQRIM-ITSEDSKLRILDGVDVIH----KFKGL--PKS---GSQMSASFTTTGKHIISIG-DDCRVYVWN  489 (645)
Q Consensus       421 i~~i~~s~~g~~~l~-~~s~dg~I~iwd~~~~~~----~~~~~--~~~---~~i~~v~~sp~~~~l~t~s-~dg~I~iwd  489 (645)
                      +..++|+|+| ++++ +...++.|.+||..+...    .+...  .+.   .....++|+|++++|++++ .++.|.+||
T Consensus       223 ~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          223 PGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             CCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CceEEECCCC-CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence            7789999998 5554 445578999999874332    11111  011   1225689999999887665 467999999


Q ss_pred             CCCCC
Q 006424          490 YDELC  494 (645)
Q Consensus       490 ~~~~~  494 (645)
                      +....
T Consensus       302 ~~~~~  306 (331)
T 3u4y_A          302 ISGKV  306 (331)
T ss_dssp             TTSCE
T ss_pred             ecCCc
Confidence            98753

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=3.6e-20  Score=184.17  Aligned_cols=234  Identities=15%  Similarity=0.135  Sum_probs=172.6

Q ss_pred             ccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC-CceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          195 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       195 ~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      .+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ +..                                       
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---------------------------------------   75 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---------------------------------------   75 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---------------------------------------
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---------------------------------------
Confidence            3556899999999999999999987 78999999976 321                                       


Q ss_pred             eccCCCceeeccC-ccCeEEEEEcCCC-eEEEEe--CCCcEEEEec--CCCeEEEEecCCCcEEEEEEeeCCCCEEE-EE
Q 006424          274 QIEESPLQELHGH-KGDVLDLAWSNSN-YLLSCS--MDKTVRMWQV--GCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SG  346 (645)
Q Consensus       274 ~~~~~~~~~l~~h-~~~V~~l~~s~~~-~l~s~s--~dg~I~iwd~--~~~~~~~~~~~~~~v~~l~~~p~~~~~l~-s~  346 (645)
                            .....+| ...+.+++|+|++ +|++++  .++...+|.+  .++. ...+.+...+.+++|+| +++.++ ++
T Consensus        76 ------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~  147 (297)
T 2ojh_A           76 ------EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP-DGKSFTYCG  147 (297)
T ss_dssp             ------EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECT-TSSEEEEEE
T ss_pred             ------eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECC-CCCEEEEEE
Confidence                  2223334 4678899999998 788887  3345555554  5554 34444445589999999 888776 77


Q ss_pred             eCCCcEEEEe--CCCCcEEEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424          347 SIDGKVRIWG--VCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  423 (645)
Q Consensus       347 s~dg~i~vwd--~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (645)
                      +.++.+++|+  +.++....+..+...+.+++|+|+|+++++++ .++.+.+|++.........+  ..    +...+.+
T Consensus       148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~--~~----~~~~~~~  221 (297)
T 2ojh_A          148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI--TD----SAYGDWF  221 (297)
T ss_dssp             EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC--CC----CSEEEEE
T ss_pred             CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE--ec----CCcccCC
Confidence            8899899998  45677777788888999999999999888776 58999999987333222222  11    2356889


Q ss_pred             EEEcCCCCcEEEEEECC-----------CeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCEEEEEeCCc
Q 006424          424 IQFSRDESQRIMITSED-----------SKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  483 (645)
Q Consensus       424 i~~s~~g~~~l~~~s~d-----------g~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg  483 (645)
                      +.|+|+| .+|++++.+           +.|++||+...  ........+...+..++|+|++++|++++.+.
T Consensus       222 ~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          222 PHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             eEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            9999998 677776655           57999998643  22333334677889999999999999887653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=2e-19  Score=183.23  Aligned_cols=238  Identities=13%  Similarity=0.124  Sum_probs=163.0

Q ss_pred             cCccCeEEEEEcCCC-eEEEEeCC-CcEEEEecC--CCe--EEEEecCCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEeC
Q 006424          285 GHKGDVLDLAWSNSN-YLLSCSMD-KTVRMWQVG--CNQ--CLNVFDHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGV  357 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~-~l~s~s~d-g~I~iwd~~--~~~--~~~~~~~~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~  357 (645)
                      .|...+.+++|+|++ +|++++.+ +.|.+|++.  +++  .+..+.....+.+++|+| +++++++++. ++.|.+||+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence            467788999999997 68888776 999999997  554  334454445889999999 8887776665 788999999


Q ss_pred             C---CCcEEEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecC-CceeeeE-EeeccccccCCCCeEEEEEcCCCC
Q 006424          358 C---EKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG-NDLKLEK-VDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       358 ~---~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~-~~~~~~~-~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                      .   ..+..........+.+++|+|+|+++++++ .++.|.+||+.. ....... .....   .....+.+++|+|+|.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~pdg~  190 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT---VEGAGPRHMVFHPNEQ  190 (343)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC---STTCCEEEEEECTTSS
T ss_pred             CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc---CCCCCcceEEECCCCC
Confidence            4   344444555556789999999999888887 899999999986 4332111 01111   1135788999999984


Q ss_pred             cEEEEEECCCeEEEEECCc--c----eeeEeec----CCCCCeEEEEEecCCCEEEEE-eCCccEEEEeCCCCCcCCCcc
Q 006424          432 QRIMITSEDSKLRILDGVD--V----IHKFKGL----PKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFPSSKQ  500 (645)
Q Consensus       432 ~~l~~~s~dg~I~iwd~~~--~----~~~~~~~----~~~~~i~~v~~sp~~~~l~t~-s~dg~I~iwd~~~~~~~~~~~  500 (645)
                      .+++++..++.|.+|+...  .    .......    .....+..++|+|++++|+++ ..++.|++||+......    
T Consensus       191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~----  266 (343)
T 1ri6_A          191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV----  266 (343)
T ss_dssp             EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC----
T ss_pred             EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc----
Confidence            3445555889999999852  1    1122211    113467789999999988754 47899999999732100    


Q ss_pred             cCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424          501 KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS  533 (645)
Q Consensus       501 ~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~  533 (645)
                         ......+...+.+..++|+|++..|+..+.
T Consensus       267 ---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  296 (343)
T 1ri6_A          267 ---LSKEGFQPTETQPRGFNVDHSGKYLIAAGQ  296 (343)
T ss_dssp             ---EEEEEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred             ---eEEeeeecCCCccceEEECCCCCEEEEecC
Confidence               011111222233567888898887776553

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=4.6e-20  Score=202.96  Aligned_cols=232  Identities=12%  Similarity=0.065  Sum_probs=170.3

Q ss_pred             ccCcEEEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      +..+|++++|+|||++||+++. ||+++||++.++                                             
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---------------------------------------------   54 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---------------------------------------------   54 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---------------------------------------------
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCC---------------------------------------------
Confidence            3557999999999999999887 999999998542                                             


Q ss_pred             CCceeeccCc-cCeEEEEEcCCCeEEEEeC---CCcEEEEecCC---CeEEEEecCCCcEEEEEEeeCCCC-EEEEEeCC
Q 006424          278 SPLQELHGHK-GDVLDLAWSNSNYLLSCSM---DKTVRMWQVGC---NQCLNVFDHHNYVTCVQFNPIDDN-YFISGSID  349 (645)
Q Consensus       278 ~~~~~l~~h~-~~V~~l~~s~~~~l~s~s~---dg~I~iwd~~~---~~~~~~~~~~~~v~~l~~~p~~~~-~l~s~s~d  349 (645)
                       ....+..|. ..+..++|+|+..+++++.   +....+|.+..   +... .+.....+...+|+| +++ .+++.+.+
T Consensus        55 -~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~-dg~~~~~~s~~~  131 (582)
T 3o4h_A           55 -ETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVD-TGEAVVFTGATE  131 (582)
T ss_dssp             -EEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEE-CSSCEEEEEECS
T ss_pred             -CcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCC-CCCeEEEEecCC
Confidence             223444454 6899999999865666664   45566665533   3333 333333445678888 664 34444445


Q ss_pred             CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC----CeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      +.+.+||+.+++...+..+..  .+++|+|||++++.++.+    +.|++||+.+....  .+  ..    +...+..++
T Consensus       132 ~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l--~~----~~~~~~~~~  201 (582)
T 3o4h_A          132 DRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VF--DS----GEGSFSSAS  201 (582)
T ss_dssp             SCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE--EE--CC----SSCEEEEEE
T ss_pred             CCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce--Ee--ec----CCCccccce
Confidence            556699999988877666555  889999999999988777    78999998877643  12  21    236689999


Q ss_pred             EcCCCCcEEEEEECCC--eEEEEECCcceeeEeecCCCCCeEEEE--------EecCCCEEEEEeCCccEEEEeC
Q 006424          426 FSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSAS--------FTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~i~~v~--------~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      |+||| +.|+++..++  .|++||....... ....+...+..++        |+|||.++++++.||++++|++
T Consensus       202 ~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          202 ISPGM-KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ECTTS-CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ECCCC-CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            99998 7788888888  8999998754443 3333555566666        9999999999999999999999

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=5.9e-19  Score=180.61  Aligned_cols=249  Identities=12%  Similarity=0.132  Sum_probs=170.8

Q ss_pred             cccCcEEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      .+...+..++|+|||+ |++++.   ++.|.+|++.++..                                        
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~----------------------------------------   75 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA----------------------------------------   75 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE----------------------------------------
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE----------------------------------------
Confidence            4556788899999999 555544   68999999965321                                        


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC-eEEEEe-CCCcEEEEecC-CC--eEEEEecCC----------CcEEEEEEeeCC
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVG-CN--QCLNVFDHH----------NYVTCVQFNPID  339 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s-~dg~I~iwd~~-~~--~~~~~~~~~----------~~v~~l~~~p~~  339 (645)
                         ..+..+..+...+..++|+|++ +|++++ .++.|.+|++. .+  ..+..+.+.          ..+.+++|+| +
T Consensus        76 ---~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-d  151 (347)
T 3hfq_A           76 ---HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-D  151 (347)
T ss_dssp             ---EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-T
T ss_pred             ---EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-C
Confidence               1233444567788999999998 677777 67999999996 33  333333221          2488999999 8


Q ss_pred             CCEEEEEeCCCcEEEEeCC-CCcEEEe----eccCCCeEEEEEccCCCEEEEE-ecCCeEEEEEecC--Cceeee-EEee
Q 006424          340 DNYFISGSIDGKVRIWGVC-EKRVVDW----ADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASG--NDLKLE-KVDF  410 (645)
Q Consensus       340 ~~~l~s~s~dg~i~vwd~~-~~~~~~~----~~~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~--~~~~~~-~~~~  410 (645)
                      ++++++...++.|++||+. ++++...    ......+..++|+|+|++++++ ..++.+.+|++..  ...... ....
T Consensus       152 g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~  231 (347)
T 3hfq_A          152 NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT  231 (347)
T ss_dssp             SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred             CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence            8866666678899999998 5554332    1233467889999999976664 5678999999985  322111 1111


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc---ceeeEeecCCCCCeEEEEEecCCCEEEEEeCC-ccEE
Q 006424          411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-CRVY  486 (645)
Q Consensus       411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d-g~I~  486 (645)
                      ..........+..++|+|+|..++++...++.|.+|++..   .........+...+..++|+|||++|++++.+ +.|.
T Consensus       232 ~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  311 (347)
T 3hfq_A          232 IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNAT  311 (347)
T ss_dssp             SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred             cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence            1110011145889999999843446667799999999762   12222222345567899999999998888764 8999


Q ss_pred             EEeCC
Q 006424          487 VWNYD  491 (645)
Q Consensus       487 iwd~~  491 (645)
                      +|+++
T Consensus       312 v~~~d  316 (347)
T 3hfq_A          312 LYARD  316 (347)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=2.6e-19  Score=201.72  Aligned_cols=267  Identities=10%  Similarity=0.023  Sum_probs=184.8

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424          200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  279 (645)
Q Consensus       200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (645)
                      ...|.+++|||| ++++.+. |+.|++||+.++.                                              
T Consensus        81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~----------------------------------------------  112 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARK----------------------------------------------  112 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTE----------------------------------------------
T ss_pred             ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCc----------------------------------------------
Confidence            356999999999 6555553 5999999997632                                              


Q ss_pred             ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCC-----CeEEEEec-CCCc--------------EEEEEEeeC
Q 006424          280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----NQCLNVFD-HHNY--------------VTCVQFNPI  338 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~-----~~~~~~~~-~~~~--------------v~~l~~~p~  338 (645)
                      ...+..+...+.+++|+|+| .|++ +.|+.|++||+.+     ++...... +...              +.++.|+| 
T Consensus       113 ~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-  190 (706)
T 2z3z_A          113 VTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-  190 (706)
T ss_dssp             EEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-
T ss_pred             eEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-
Confidence            23344566778889999998 6666 5789999999998     77665443 2222              48899999 


Q ss_pred             CCCEEEEEe---------------------------------CCCcEEEEeCCCCcEEEee---ccCCCeEEEEEccCCC
Q 006424          339 DDNYFISGS---------------------------------IDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDGK  382 (645)
Q Consensus       339 ~~~~l~s~s---------------------------------~dg~i~vwd~~~~~~~~~~---~~~~~v~~l~~sp~g~  382 (645)
                      ++++|++++                                 .+..|++||+.+++.....   .+...+.+++|+|||+
T Consensus       191 Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~  270 (706)
T 2z3z_A          191 KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN  270 (706)
T ss_dssp             TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS
T ss_pred             CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC
Confidence            999999987                                 4467999999998876644   4567799999999999


Q ss_pred             EEEEEecCC-----eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC--CCCcEEEEEECCCeEEEEECC-cceee
Q 006424          383 GFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR--DESQRIMITSEDSKLRILDGV-DVIHK  454 (645)
Q Consensus       383 ~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~--~g~~~l~~~s~dg~I~iwd~~-~~~~~  454 (645)
                      .|++++.++     .|.+||+.+............  ......+.++.|+|  +| .++++++.|+.+++|+.. .....
T Consensus       271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~--~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~~  347 (706)
T 2z3z_A          271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD--KHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRLI  347 (706)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC--SSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCEE
T ss_pred             EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC--CCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCEE
Confidence            999988775     899999987732222111111  00112346789999  98 788999999999998754 22222


Q ss_pred             EeecCCCCCeEE-EEEecCCCEEEEEeC-Cc----cEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccc
Q 006424          455 FKGLPKSGSQMS-ASFTTTGKHIISIGD-DC----RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQ  528 (645)
Q Consensus       455 ~~~~~~~~~i~~-v~~sp~~~~l~t~s~-dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l  528 (645)
                      .....+...+.. ++|+|+++.|+.++. ++    .|+.||+.++......            +.+.+..++|+||+..+
T Consensus       348 ~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~------------~~~~~~~~~~spdg~~l  415 (706)
T 2z3z_A          348 RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT------------PESGMHRTQLSPDGSAI  415 (706)
T ss_dssp             EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC------------CSSSEEEEEECTTSSEE
T ss_pred             EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc------------CCCceEEEEECCCCCEE
Confidence            222335566776 799999998876654 44    6777777665321111            12334566666666665


Q ss_pred             ccc
Q 006424          529 KSL  531 (645)
Q Consensus       529 ~~~  531 (645)
                      +..
T Consensus       416 ~~~  418 (706)
T 2z3z_A          416 IDI  418 (706)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.84  E-value=3.3e-19  Score=201.43  Aligned_cols=247  Identities=11%  Similarity=0.107  Sum_probs=171.7

Q ss_pred             cccccccC---cEEEEEECCCCCEEEEEeCC---------CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCC
Q 006424          194 QEIQAHKG---CIWTLKFSPDGRYLASGGED---------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKS  261 (645)
Q Consensus       194 ~~l~~H~~---~V~~l~fspdg~~L~sgs~D---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (645)
                      ..+.+|..   .|.+++|||||++|++++.+         +.+.+||+.++..                           
T Consensus        51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~---------------------------  103 (723)
T 1xfd_A           51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP---------------------------  103 (723)
T ss_dssp             EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC---------------------------
T ss_pred             EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce---------------------------
Confidence            33445554   49999999999999999875         7788999987421                           


Q ss_pred             CcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCc----------
Q 006424          262 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY----------  329 (645)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~----------  329 (645)
                                      ..+....+|...+..++|+|+| .|++++. +.|++||+.+++...... +...          
T Consensus       104 ----------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v  166 (723)
T 1xfd_A          104 ----------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL  166 (723)
T ss_dssp             ----------------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred             ----------------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECccccee
Confidence                            0112223456668899999998 7777776 799999999887766553 2322          


Q ss_pred             --------EEEEEEeeCCCCEEEEEeCCC----------------------------------cEEEEeCCCCcE-EEee
Q 006424          330 --------VTCVQFNPIDDNYFISGSIDG----------------------------------KVRIWGVCEKRV-VDWA  366 (645)
Q Consensus       330 --------v~~l~~~p~~~~~l~s~s~dg----------------------------------~i~vwd~~~~~~-~~~~  366 (645)
                              +.+++|+| +++.|++++.|+                                  .|++||+.+++. ..+.
T Consensus       167 ~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~  245 (723)
T 1xfd_A          167 YEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM  245 (723)
T ss_dssp             HHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred             EEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence                    37899999 999999887553                                  799999988874 4444


Q ss_pred             cc------CCCeEEEEEccCCCEEEEEecC----CeEEEEEecCCceeeeEEeeccccccCCCCe----EEEEEcCCCCc
Q 006424          367 DV------RDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKI----TGIQFSRDESQ  432 (645)
Q Consensus       367 ~~------~~~v~~l~~sp~g~~l~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i----~~i~~s~~g~~  432 (645)
                      .+      ...+.+++|+|||+++++....    ..|.+||+.+........ ...     ...+    ..+.|+|+|..
T Consensus       246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~-----~~~~~~~~~~~~~spdg~~  319 (723)
T 1xfd_A          246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE-DES-----EAWLHRQNEEPVFSKDGRK  319 (723)
T ss_dssp             CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-EEC-----SSCCCCCCCCCEECTTSCS
T ss_pred             CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE-ecc-----CCEEeccCCCceEcCCCCe
Confidence            33      5678999999999988776543    579999998776432211 111     1222    36799999855


Q ss_pred             EEEE-EECCC------eEEEEE-CCcc----eeeEeecCCCCCeEE-EEEecCCCEEEEEeCC---ccEEEEeCCCC
Q 006424          433 RIMI-TSEDS------KLRILD-GVDV----IHKFKGLPKSGSQMS-ASFTTTGKHIISIGDD---CRVYVWNYDEL  493 (645)
Q Consensus       433 ~l~~-~s~dg------~I~iwd-~~~~----~~~~~~~~~~~~i~~-v~~sp~~~~l~t~s~d---g~I~iwd~~~~  493 (645)
                      ++++ +..++      .|++|| ....    ...+.  .+...+.. ++|+|||+.|+..+.+   +.+++|+++..
T Consensus       320 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          320 FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             EEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence            5554 56677      577777 3322    22222  12334554 6999999999876655   78999998643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.83  E-value=4e-19  Score=201.41  Aligned_cols=240  Identities=10%  Similarity=0.045  Sum_probs=175.7

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      ..|.+++|||||++|++++. +.|++||+.++.                                           ....
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~-------------------------------------------~~~~  144 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEG-------------------------------------------KAAV  144 (741)
T ss_dssp             EESCCCEECTTSSEEEEEET-TEEEEEESSSCS-------------------------------------------TTSC
T ss_pred             cCcceeEECCCCCEEEEEeC-CcEEEEECCCCC-------------------------------------------cceE
Confidence            34889999999999999987 899999998620                                           0023


Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecC-CCc----------------EEEEEEeeCCCCE
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDH-HNY----------------VTCVQFNPIDDNY  342 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~----------------v~~l~~~p~~~~~  342 (645)
                      ..+..|...+.+++|+|+| +|++++ ++.|++||+.+++....... ...                +.+++|+| +++.
T Consensus       145 ~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~  222 (741)
T 2ecf_A          145 RQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSA  222 (741)
T ss_dssp             CBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSC
T ss_pred             EEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCE
Confidence            4556678889999999998 677666 56999999999887665532 221                47899999 9999


Q ss_pred             EEEEeCCC---------------------------------cEEEEeCCC-CcEEEee---ccCCCeEEEEEccCCCEEE
Q 006424          343 FISGSIDG---------------------------------KVRIWGVCE-KRVVDWA---DVRDVISAICYIPDGKGFI  385 (645)
Q Consensus       343 l~s~s~dg---------------------------------~i~vwd~~~-~~~~~~~---~~~~~v~~l~~sp~g~~l~  385 (645)
                      |++++.|+                                 .|++||+.+ ++...+.   .+...+.+++| |||++|+
T Consensus       223 l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~  301 (741)
T 2ecf_A          223 IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLS  301 (741)
T ss_dssp             EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEE
T ss_pred             EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEE
Confidence            99887765                                 789999988 8766543   46678999999 9999999


Q ss_pred             EEec-----CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC-cceeeEeecC
Q 006424          386 VGSI-----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLP  459 (645)
Q Consensus       386 ~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~  459 (645)
                      +++.     ++.|.+||+.+...... ...+..  .....+.++.|+|+| +++++++.|+.++||... ... ......
T Consensus       302 ~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~--~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~-~~~l~~  376 (741)
T 2ecf_A          302 FQRQSRDQKKLDLVEVTLASNQQRVL-AHETSP--TWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGK-AAALTH  376 (741)
T ss_dssp             EEEEETTSSEEEEEEEETTTCCEEEE-EEEECS--SCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSC-EEESCC
T ss_pred             EEEecccCCeEEEEEEECCCCceEEE-EEcCCC--CcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCCC-eeeeee
Confidence            8764     56799999988765332 111110  000135678999998 588899999977777644 111 223333


Q ss_pred             CCCCeEEE-EEecCCCEEEEE-eCCc--cEEEEeCCC
Q 006424          460 KSGSQMSA-SFTTTGKHIISI-GDDC--RVYVWNYDE  492 (645)
Q Consensus       460 ~~~~i~~v-~~sp~~~~l~t~-s~dg--~I~iwd~~~  492 (645)
                      +...+..+ .|+|+++.|+.. +.++  .++||+++.
T Consensus       377 ~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          377 GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            56678777 599999987654 4455  899999864

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=7.6e-20  Score=206.55  Aligned_cols=241  Identities=10%  Similarity=0.064  Sum_probs=164.0

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec
Q 006424          205 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  284 (645)
Q Consensus       205 ~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  284 (645)
                      +++|+|||+++++ +.|+.|++||+.++.                                             ....+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~---------------------------------------------~~~~~~   53 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQ---------------------------------------------SYTILS   53 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCC---------------------------------------------EEEEEC
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCc---------------------------------------------EEEEEc
Confidence            7899999976655 469999999998732                                             233333


Q ss_pred             cCcc---CeEEEEEcCCC-eEEEEeC---------CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          285 GHKG---DVLDLAWSNSN-YLLSCSM---------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       285 ~h~~---~V~~l~~s~~~-~l~s~s~---------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                      +|..   .+.+++||||| +|++++.         ++.|++||+.+++.+........+..++|+| +++.|+++. ++.
T Consensus        54 ~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SP-DG~~la~~~-~~~  131 (719)
T 1z68_A           54 NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSP-VGSKLAYVY-QNN  131 (719)
T ss_dssp             HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECS-STTCEEEEE-TTE
T ss_pred             cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECC-CCCEEEEEE-CCe
Confidence            3433   48999999998 7777765         7899999999998732222345688999999 999999886 789


Q ss_pred             EEEEeCCCCcEEEee--ccCCCe-----------------EEEEEccCCCEEEEEecCC---------------------
Q 006424          352 VRIWGVCEKRVVDWA--DVRDVI-----------------SAICYIPDGKGFIVGSITG---------------------  391 (645)
Q Consensus       352 i~vwd~~~~~~~~~~--~~~~~v-----------------~~l~~sp~g~~l~~g~~dg---------------------  391 (645)
                      |++||+.+++...+.  ++...+                 .+++|+|||++|++++.|.                     
T Consensus       132 i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  211 (719)
T 1z68_A          132 IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN  211 (719)
T ss_dssp             EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred             EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence            999999888766543  222212                 5899999999999987652                     


Q ss_pred             -------------eEEEEEecCCcee-eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC----CeEEEEE----CC
Q 006424          392 -------------TCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED----SKLRILD----GV  449 (645)
Q Consensus       392 -------------~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d----g~I~iwd----~~  449 (645)
                                   .|++||+.+.... ...+........+...+.+++|+||+ +++++....    ..|.+||    ..
T Consensus       212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~  290 (719)
T 1z68_A          212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQ  290 (719)
T ss_dssp             EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred             ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCC
Confidence                         7788888765531 00111101111234678999999996 666664432    3588899    65


Q ss_pred             cce--eeEe--ecCCCCCeE-----EEEEecCCCEEEE--EeCCc--cEEEEeCCCCC
Q 006424          450 DVI--HKFK--GLPKSGSQM-----SASFTTTGKHIIS--IGDDC--RVYVWNYDELC  494 (645)
Q Consensus       450 ~~~--~~~~--~~~~~~~i~-----~v~~sp~~~~l~t--~s~dg--~I~iwd~~~~~  494 (645)
                      ...  ....  ...+...+.     .+.|+|||+.|+.  +..+|  .|++||+.++.
T Consensus       291 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          291 TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence            322  2221  023455555     7899999996654  44455  57777776654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=8.4e-19  Score=178.14  Aligned_cols=235  Identities=10%  Similarity=0.023  Sum_probs=173.5

Q ss_pred             cEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          202 CIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       202 ~V~~l~fspdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      .+.+++|+|+|+++ ++++.++.|.+||+.++...                                             
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---------------------------------------------   69 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL---------------------------------------------   69 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---------------------------------------------
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---------------------------------------------
Confidence            47889999999865 55666889999999874322                                             


Q ss_pred             eeec-c----CccCeEEEEEcCCC-eEEEEe------------CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCE
Q 006424          281 QELH-G----HKGDVLDLAWSNSN-YLLSCS------------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY  342 (645)
Q Consensus       281 ~~l~-~----h~~~V~~l~~s~~~-~l~s~s------------~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~  342 (645)
                      ..+. +    |...+.+++|+|++ ++++++            .++.|.+||+.+++.+..+.....+.+++|+| ++++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~  148 (337)
T 1pby_B           70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSK  148 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSC
T ss_pred             eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCE
Confidence            2221 1    23357789999998 777775            57999999999999888887667788999999 8888


Q ss_pred             EEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC------------------------eEEEEEe
Q 006424          343 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG------------------------TCHFYKA  398 (645)
Q Consensus       343 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg------------------------~i~iwd~  398 (645)
                      ++++  ++.|++||+.+++.............+.|+|+|+.+++.+..+                        .|.+||+
T Consensus       149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  226 (337)
T 1pby_B          149 LYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             EEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred             EEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence            8877  6899999999988765443322122337899998776554332                        4689999


Q ss_pred             cCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEE
Q 006424          399 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS  478 (645)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t  478 (645)
                      .+....  ......    +...+.+++|+|+| .+++++  ++.|++||........... ....+.+++|+|+|++|++
T Consensus       227 ~~~~~~--~~~~~~----~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~  296 (337)
T 1pby_B          227 ETGEMA--MREVRI----MDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWL  296 (337)
T ss_dssp             TTCCEE--EEEEEE----CSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEE
T ss_pred             CCCCce--EeecCC----CCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEE
Confidence            887654  222222    23567899999998 677776  7999999987543322222 2346789999999999999


Q ss_pred             EeCCccEEEEeCCCCC
Q 006424          479 IGDDCRVYVWNYDELC  494 (645)
Q Consensus       479 ~s~dg~I~iwd~~~~~  494 (645)
                      ++.++.|++||+.+++
T Consensus       297 ~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          297 GGALGDLAAYDAETLE  312 (337)
T ss_dssp             ESBSSEEEEEETTTCC
T ss_pred             EcCCCcEEEEECcCCc
Confidence            9999999999998774

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=7.6e-19  Score=185.11  Aligned_cols=258  Identities=14%  Similarity=0.148  Sum_probs=170.2

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      +...++.+++++++.++++|+.|| +++|+........   .....      ..                  ...  ...
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~---~~~~~------~~------------------~~~--~~~   84 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN---KPGDD------PN------------------KIV--DKV   84 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCC---CTTCC------TT------------------CEE--ECC
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhc---ccccC------cc------------------ccc--ccC
Confidence            344689999999999999999998 9999875411000   00000      00                  000  011


Q ss_pred             CceeeccCccCeEEEEEcCCC-eEE----EEeCCCcEEEEecCCC--------eE---EEEe-cCCCcEEEEEEeeCCCC
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLL----SCSMDKTVRMWQVGCN--------QC---LNVF-DHHNYVTCVQFNPIDDN  341 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~----s~s~dg~I~iwd~~~~--------~~---~~~~-~~~~~v~~l~~~p~~~~  341 (645)
                      .... ..|...|.+++|+|++ +|+    +|+.|++|++||+.++        +.   +..+ +|...|.+++|+|.+++
T Consensus        85 ~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~  163 (434)
T 2oit_A           85 QGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS  163 (434)
T ss_dssp             CCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT
T ss_pred             cccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC
Confidence            1112 2467889999999997 777    7888999999998654        22   2333 37889999999994489


Q ss_pred             EEEEEeCCCcEEEEeCCCCcEE-EeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccc-ccCCC
Q 006424          342 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-KTSGN  419 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~  419 (645)
                      +|++++.||+|++||++++... ....|...|++++|+|+|++|++|+.||.|++||.+. .. ...+..+... ..|..
T Consensus       164 ~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~-~~~~~~~~~~~~~~~~  241 (434)
T 2oit_A          164 MVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QE-KKVIPCPPFYESDHPV  241 (434)
T ss_dssp             EEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CE-EEEECCCTTCCTTSCE
T ss_pred             EEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-cc-cccccCCcccCCCCce
Confidence            9999999999999999987554 3566788999999999999999999999999999983 22 1222222111 11234


Q ss_pred             CeEEEEEcCCCCcEEEE-EECCC------eEEEEECCcc----eeeEeec--------CCCCCeEEEEEecCCCEEEEEe
Q 006424          420 KITGIQFSRDESQRIMI-TSEDS------KLRILDGVDV----IHKFKGL--------PKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       420 ~i~~i~~s~~g~~~l~~-~s~dg------~I~iwd~~~~----~~~~~~~--------~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      .+.+++|++++ .++++ ++.||      .+++|++...    ...+...        ....+...+.+-++.+++++++
T Consensus       242 ~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s  320 (434)
T 2oit_A          242 RVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAAS  320 (434)
T ss_dssp             EEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEE
T ss_pred             eEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEec
Confidence            79999999986 45543 44443      3899997643    1122111        1122223333446767766655


Q ss_pred             C-CccEEEEeC
Q 006424          481 D-DCRVYVWNY  490 (645)
Q Consensus       481 ~-dg~I~iwd~  490 (645)
                      . .+.|.|...
T Consensus       321 ~~s~dv~vl~~  331 (434)
T 2oit_A          321 AASTEVSILAR  331 (434)
T ss_dssp             TTCSBCEEEEE
T ss_pred             CCCCceeEEEe
Confidence            3 455666654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.81  E-value=1.9e-18  Score=175.49  Aligned_cols=261  Identities=8%  Similarity=-0.031  Sum_probs=182.0

Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec-cCcc-Ce
Q 006424          213 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKG-DV  290 (645)
Q Consensus       213 ~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~-~V  290 (645)
                      ++|++++.++.|.+||+.++.                                             .+..+. ++.. .+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~---------------------------------------------~~~~~~~~~~~~~~   36 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMA---------------------------------------------VDKVITIADAGPTP   36 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE---------------------------------------------EEEEEECTTCTTCC
T ss_pred             cEEEEcCCCCeEEEEECCCCc---------------------------------------------EEEEEEcCCCCCCc
Confidence            479999999999999998732                                             233333 2222 47


Q ss_pred             EEEEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEecCCC------cEEEEEEeeCCCCEEEEEe------------CCC
Q 006424          291 LDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHN------YVTCVQFNPIDDNYFISGS------------IDG  350 (645)
Q Consensus       291 ~~l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~------~v~~l~~~p~~~~~l~s~s------------~dg  350 (645)
                      ..++|+|++ .+ ++++.++.|.+||+.+++.+..+....      .+.+++|+| +++++++++            .++
T Consensus        37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T 1pby_B           37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCC
T ss_pred             cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCc
Confidence            889999997 54 566668899999999998887775433      678899999 898888886            579


Q ss_pred             cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          351 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      .|.+||+.+++..........+.+++|+|+|++++++  ++.|.+||+.+..... .+.....    ..   .+.|+|+|
T Consensus       116 ~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~-~~~~~~~----~~---~~~~s~dg  185 (337)
T 1pby_B          116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVE-DKPIQSW----EA---ETYAQPDV  185 (337)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEE-EECSTTT----TT---TTBCCCBC
T ss_pred             eEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEee-eeecccc----CC---CceeCCCc
Confidence            9999999998877766666778899999999988888  6899999998776432 2221110    11   22678887


Q ss_pred             CcEEEEEECCC-----------------------eEEEEECCccee-eEeecCCCCCeEEEEEecCCCEEEEEeCCccEE
Q 006424          431 SQRIMITSEDS-----------------------KLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY  486 (645)
Q Consensus       431 ~~~l~~~s~dg-----------------------~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~  486 (645)
                      ..+++++..++                       .|.+||...... ......+...+.+++|+|++++++++  ++.|+
T Consensus       186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~  263 (337)
T 1pby_B          186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLE  263 (337)
T ss_dssp             CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred             cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEE
Confidence            43333333333                       468999774322 23333355678899999999999988  79999


Q ss_pred             EEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424          487 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  545 (645)
Q Consensus       487 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~  545 (645)
                      +||+.+++....           +.....+..++|+|++..|+..+.+   ..+.+|+.
T Consensus       264 ~~d~~~~~~~~~-----------~~~~~~~~~~~~s~dg~~l~~~~~~---~~i~v~d~  308 (337)
T 1pby_B          264 SFDLEKNASIKR-----------VPLPHSYYSVNVSTDGSTVWLGGAL---GDLAAYDA  308 (337)
T ss_dssp             EEETTTTEEEEE-----------EECSSCCCEEEECTTSCEEEEESBS---SEEEEEET
T ss_pred             EEECCCCcCcce-----------ecCCCceeeEEECCCCCEEEEEcCC---CcEEEEEC
Confidence            999987632211           1112234567888888877765332   33555554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=4.2e-17  Score=167.80  Aligned_cols=247  Identities=14%  Similarity=0.158  Sum_probs=166.7

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCC----CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          199 HKGCIWTLKFSPDGRYLASGGED----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      |...+..++|+|||++|++++.+    +.|.+|++......                                       
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~---------------------------------------   88 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT---------------------------------------   88 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE---------------------------------------
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc---------------------------------------
Confidence            66778889999999999999886    79999998651000                                       


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCCeEEEEe-CCCcEEEEecCCCeEEEEe----c-----------CCCcEEEEEEeeC
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVF----D-----------HHNYVTCVQFNPI  338 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s-~dg~I~iwd~~~~~~~~~~----~-----------~~~~v~~l~~~p~  338 (645)
                        ...+.....+......+++ ..++|++++ .++.|.+|++.....+...    .           +...+.+++|+| 
T Consensus        89 --~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-  164 (361)
T 3scy_A           89 --LHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-  164 (361)
T ss_dssp             --EEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-
T ss_pred             --EEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-
Confidence              0112333345556777888 334566555 6889999999754332211    1           123468899999 


Q ss_pred             CCCEEEEEe-CCCcEEEEeCCCCc-------E-------EEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCc
Q 006424          339 DDNYFISGS-IDGKVRIWGVCEKR-------V-------VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGND  402 (645)
Q Consensus       339 ~~~~l~s~s-~dg~i~vwd~~~~~-------~-------~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~  402 (645)
                      +++++++++ .++.|.+|++....       +       .........+..++|+|+|+++++++ .++.|.+|++.+..
T Consensus       165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~  244 (361)
T 3scy_A          165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM  244 (361)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred             CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence            898666555 47899999886432       1       22334456688999999999888877 68999999998654


Q ss_pred             eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC--CCeEEEEECC--c-ceeeEeecCCCCCeEEEEEecCCCEEE
Q 006424          403 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE--DSKLRILDGV--D-VIHKFKGLPKSGSQMSASFTTTGKHII  477 (645)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~--dg~I~iwd~~--~-~~~~~~~~~~~~~i~~v~~sp~~~~l~  477 (645)
                      ..... ... ....+......++|+|+| ++|+++..  ++.|.+|++.  . .............+.+++|+|+|++|+
T Consensus       245 ~~~~~-~~~-~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~  321 (361)
T 3scy_A          245 LDEIQ-TVA-ADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLL  321 (361)
T ss_dssp             EEEEE-EEE-SCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEE
T ss_pred             eEEeE-EEe-cCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEE
Confidence            32211 111 111223456899999998 66666655  4899999975  1 111222111245678999999999998


Q ss_pred             EEe-CCccEEEEeCC
Q 006424          478 SIG-DDCRVYVWNYD  491 (645)
Q Consensus       478 t~s-~dg~I~iwd~~  491 (645)
                      +++ .++.|.+|+++
T Consensus       322 ~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          322 VACRDTNVIQIFERD  336 (361)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEEE
Confidence            887 67899997665

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.81  E-value=4.3e-18  Score=174.18  Aligned_cols=201  Identities=14%  Similarity=0.156  Sum_probs=139.5

Q ss_pred             cCccCeEEEEEcCCCeEEEEeC---CCcEEEEecCCCeE--EEEe-cCCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEeC
Q 006424          285 GHKGDVLDLAWSNSNYLLSCSM---DKTVRMWQVGCNQC--LNVF-DHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGV  357 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~~l~s~s~---dg~I~iwd~~~~~~--~~~~-~~~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~  357 (645)
                      .+...+..++|+|++.|++++.   ++.|.+||+.+++.  +..+ .+...+..++|+| ++++|++++ .++.|.+|++
T Consensus        37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEE
T ss_pred             eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEe
Confidence            3456778899999986665554   68999999987763  3332 3667789999999 999888887 6789999999


Q ss_pred             C-CCcEEE--eecc----------CCCeEEEEEccCCCEEEEEecCCeEEEEEec-CCceeee-EEeeccccccCCCCeE
Q 006424          358 C-EKRVVD--WADV----------RDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDLKLE-KVDFHDRKKTSGNKIT  422 (645)
Q Consensus       358 ~-~~~~~~--~~~~----------~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~-~~~~~~~-~~~~~~~~~~~~~~i~  422 (645)
                      . .+....  ...+          ...+.+++|+|+|+.+++...++.|.+|++. +...... .....     ....+.
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-----~g~~p~  190 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME-----AGFGPR  190 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC-----TTCCEE
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-----CCCCCc
Confidence            5 333222  1111          1248899999999966666678899999998 3332211 11111     124678


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEECCc--ce----eeEeecCC----CCCeEEEEEecCCCEEE-EEeCCccEEEEeCC
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILDGVD--VI----HKFKGLPK----SGSQMSASFTTTGKHII-SIGDDCRVYVWNYD  491 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~--~~----~~~~~~~~----~~~i~~v~~sp~~~~l~-t~s~dg~I~iwd~~  491 (645)
                      .++|+|+|..+++++..++.|.+|+...  ..    ........    ...+..++|+|||++|+ +...++.|.+|+++
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            8999999843555566789999998652  11    11111111    14588999999999874 55568999999986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=4.1e-18  Score=192.72  Aligned_cols=245  Identities=11%  Similarity=0.110  Sum_probs=166.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      ...++.|+|||++++++  ||.|++||+.++..                                             ..
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~---------------------------------------------~~   50 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS---------------------------------------------SV   50 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE---------------------------------------------EE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCce---------------------------------------------EE
Confidence            35689999999999986  99999999988532                                             22


Q ss_pred             eeccCcc-----CeEEEEEcCCC-eEEEEeCC---------CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424          282 ELHGHKG-----DVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       282 ~l~~h~~-----~V~~l~~s~~~-~l~s~s~d---------g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                      .+.+|..     ....++||||| +|+.++.+         +.+.+||+.+++......+...+...+|+| +++.||.+
T Consensus        51 ~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SP-dG~~la~~  129 (740)
T 4a5s_A           51 FLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP-VGHKLAYV  129 (740)
T ss_dssp             EECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS-STTCEEEE
T ss_pred             EEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECC-CCCEEEEE
Confidence            3333432     23458899998 77777765         567799999998876666778899999999 99999888


Q ss_pred             eCCCcEEEEeCCCCcEEEeec--cCCCe-----------------EEEEEccCCCEEEEEecCC----------------
Q 006424          347 SIDGKVRIWGVCEKRVVDWAD--VRDVI-----------------SAICYIPDGKGFIVGSITG----------------  391 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~~~~--~~~~v-----------------~~l~~sp~g~~l~~g~~dg----------------  391 (645)
                      . |+.|++||+.++....+..  +...+                 .++.|||||+.|+.++.|.                
T Consensus       130 ~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~  208 (740)
T 4a5s_A          130 W-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL  208 (740)
T ss_dssp             E-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred             E-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence            5 6899999998887665432  22222                 3589999999999875332                


Q ss_pred             --------------------eEEEEEecC---Cce-eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE-C---CCeE
Q 006424          392 --------------------TCHFYKASG---NDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS-E---DSKL  443 (645)
Q Consensus       392 --------------------~i~iwd~~~---~~~-~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s-~---dg~I  443 (645)
                                          .|++||+.+   ... ....+........+...+..++|+||| +.++... .   +..|
T Consensus       209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i  287 (740)
T 4a5s_A          209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVM  287 (740)
T ss_dssp             SSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEE
T ss_pred             CCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEE
Confidence                                366677766   421 111111110000134568899999998 5555443 2   2479


Q ss_pred             EEEECCcce--------eeEeecCCCCCeE-----EEEEecCCCEEE-EEeCC---ccEEEEeCCCCCcC
Q 006424          444 RILDGVDVI--------HKFKGLPKSGSQM-----SASFTTTGKHII-SIGDD---CRVYVWNYDELCFP  496 (645)
Q Consensus       444 ~iwd~~~~~--------~~~~~~~~~~~i~-----~v~~sp~~~~l~-t~s~d---g~I~iwd~~~~~~~  496 (645)
                      ++||.....        ..+....+...+.     ...|+|||+.|+ ..+.+   ..|++||..++...
T Consensus       288 ~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~  357 (740)
T 4a5s_A          288 DICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT  357 (740)
T ss_dssp             EEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred             EEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence            999965432        2221122444443     688999999887 66543   47888998876533

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=5.3e-18  Score=173.23  Aligned_cols=235  Identities=9%  Similarity=-0.013  Sum_probs=169.2

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec
Q 006424          205 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  284 (645)
Q Consensus       205 ~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  284 (645)
                      .+++++++.++++++.++.|.+||+.++.                                             .+..+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~---------------------------------------------~~~~~~   38 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDT---------------------------------------------VYKSCV   38 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTE---------------------------------------------EEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCc---------------------------------------------EEEEEe
Confidence            45678899999999999999999998732                                             233333


Q ss_pred             cCc-cCeEEEEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEecCC-------CcEEEEEEeeCCCCEEEEEeCC-----
Q 006424          285 GHK-GDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHH-------NYVTCVQFNPIDDNYFISGSID-----  349 (645)
Q Consensus       285 ~h~-~~V~~l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~~-------~~v~~l~~~p~~~~~l~s~s~d-----  349 (645)
                      .+. ..+..++|+|++ .+ +++..++.|.+||+.+++.+..+...       ..+.+++|+| +++++++++.+     
T Consensus        39 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~  117 (349)
T 1jmx_B           39 MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLN  117 (349)
T ss_dssp             CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECS
T ss_pred             cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccc
Confidence            222 257789999997 44 45667899999999999888776532       2378899999 99999988865     


Q ss_pred             -------CcEEEEeCCCCcE---EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccc-----
Q 006424          350 -------GKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-----  414 (645)
Q Consensus       350 -------g~i~vwd~~~~~~---~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-----  414 (645)
                             +.|.+||+.+++.   .....+...+.+++|+|+|+ +++++  +.|.+||+.+..... .+......     
T Consensus       118 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~-~~~~~~~~~~~~~  193 (349)
T 1jmx_B          118 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTV-ALPLRNWNRKGYS  193 (349)
T ss_dssp             SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEE-EECSTTCCCTTBC
T ss_pred             cccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceec-cccccccCCcccc
Confidence                   8999999987443   23334455788999999999 66653  449999987765432 11111000     


Q ss_pred             ---------------------------------------------------------ccCCCCeEEEEEcC-CCCcEEEE
Q 006424          415 ---------------------------------------------------------KTSGNKITGIQFSR-DESQRIMI  436 (645)
Q Consensus       415 ---------------------------------------------------------~~~~~~i~~i~~s~-~g~~~l~~  436 (645)
                                                                               ......+.+++|+| +| .++++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~  272 (349)
T 1jmx_B          194 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYG  272 (349)
T ss_dssp             CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEE
T ss_pred             CccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEE
Confidence                                                                     00112456778889 87 67777


Q ss_pred             EECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          437 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       437 ~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +  ++.|.+||+.+........ ....+.+++|+|++++|++++.++.|++||+.++
T Consensus       273 ~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          273 V--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             E--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             E--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence            7  8899999987544322221 2345678999999999999888999999999876

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=1.4e-17  Score=175.43  Aligned_cols=169  Identities=17%  Similarity=0.152  Sum_probs=128.3

Q ss_pred             cccCcEEEEEECCCCCEEE----EEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          198 AHKGCIWTLKFSPDGRYLA----SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~----sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      .|.+.|++++|+|+|++|+    +|+.|+.|+|||+.+......            ...                  .  
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~------------~~~------------------~--  137 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK------------QQK------------------R--  137 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC------------SSC------------------C--
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCc------------CCc------------------c--
Confidence            4678899999999999999    788999999999875210000            000                  0  


Q ss_pred             eccCCCceeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEE-ecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                        ....+..+.+|...|.+++|+|+ + +|++++.||+|++||++++..+.. ..|...|++++|+| ++++|++|+.||
T Consensus       138 --~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg  214 (434)
T 2oit_A          138 --PFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNG  214 (434)
T ss_dssp             --CSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTS
T ss_pred             --eeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCC
Confidence              00113556789999999999997 4 899999999999999998866543 35788999999999 899999999999


Q ss_pred             cEEEEeCCCCcEEEeecc-------CCCeEEEEEccCCCEEEEE-ecCC------eEEEEEecCC
Q 006424          351 KVRIWGVCEKRVVDWADV-------RDVISAICYIPDGKGFIVG-SITG------TCHFYKASGN  401 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~~~~-------~~~v~~l~~sp~g~~l~~g-~~dg------~i~iwd~~~~  401 (645)
                      .|++||++......+..+       ...+.+++|++++.++++. ..+|      .+++|+++..
T Consensus       215 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          215 TVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            999999984333333222       2379999999988777553 3443      3899999865

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.78  E-value=7.3e-17  Score=165.08  Aligned_cols=227  Identities=7%  Similarity=0.050  Sum_probs=168.4

Q ss_pred             CcEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424          201 GCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  279 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (645)
                      ..+..++|+|+|++++ ++..++.|.+||..++...                                            
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--------------------------------------------  124 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK--------------------------------------------  124 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE--------------------------------------------
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE--------------------------------------------
Confidence            3467899999999555 5556899999999875432                                            


Q ss_pred             ceeeccCc---------cCeEEEEEcCCC-eEEEEe--CCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEE
Q 006424          280 LQELHGHK---------GDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       280 ~~~l~~h~---------~~V~~l~~s~~~-~l~s~s--~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~  346 (645)
                       ..+..+.         ..+.+++|+|++ ++++++  .++.|.+||..+++.+..+. +...+.+++|+| +++.++++
T Consensus       125 -~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~  202 (353)
T 3vgz_A          125 -GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTT  202 (353)
T ss_dssp             -EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEE
T ss_pred             -EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEE
Confidence             2222211         236889999987 566554  47899999999999998887 666789999999 99999999


Q ss_pred             eCCCcEEEEeCCCCcEEEeec-----cCCCeEEEEEccCCCEEEEEecC-CeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          347 SIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~~~~-----~~~~v~~l~~sp~g~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      +.++.|.+||+.+++......     +...+..++|+|+|+++++++.+ +.|.+||..+..... .+...       . 
T Consensus       203 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~~-------~-  273 (353)
T 3vgz_A          203 NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA-KVAAP-------E-  273 (353)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE-EEECS-------S-
T ss_pred             cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEEcC-------C-
Confidence            999999999999988765432     34567889999999988777654 899999998776532 22221       1 


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCc
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  483 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg  483 (645)
                      ...+.|+|+|..++++...++.|.+||..+........ ....+.+++|+|+|++|+++..++
T Consensus       274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD-TPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-CCSEEEEEEECTTSCEEEEEEECC
T ss_pred             CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-cCCCCCeEEEcCCCCEEEEEEccc
Confidence            25689999984445555578999999987543332222 344679999999999887776553

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.77  E-value=1.7e-17  Score=172.31  Aligned_cols=287  Identities=11%  Similarity=0.044  Sum_probs=180.6

Q ss_pred             cccccccCcEEE-----EEECCCCCEEEEEeC-CCc--EEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424          194 QEIQAHKGCIWT-----LKFSPDGRYLASGGE-DGV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  265 (645)
Q Consensus       194 ~~l~~H~~~V~~-----l~fspdg~~L~sgs~-Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (645)
                      ..|..|.+....     .+|||||++|+.++. +|.  |.+||+.++.                                
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~--------------------------------   71 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV--------------------------------   71 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE--------------------------------
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc--------------------------------
Confidence            445566666666     889999999999887 674  7777877632                                


Q ss_pred             eecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEE--EeeCCCC
Q 006424          266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ--FNPIDDN  341 (645)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~--~~p~~~~  341 (645)
                                   ......+|...+..+.|+|++ .|+.++.++.|++||+.+++....+. +...+....  ++| ++.
T Consensus        72 -------------~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~  137 (388)
T 3pe7_A           72 -------------ATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DCT  137 (388)
T ss_dssp             -------------EEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TSS
T ss_pred             -------------eEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECC-CCC
Confidence                         223334555555567899998 89999999999999999988776665 334443333  477 888


Q ss_pred             EEEEEe----------------------CCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc-CCCEEEEEecC------Ce
Q 006424          342 YFISGS----------------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSIT------GT  392 (645)
Q Consensus       342 ~l~s~s----------------------~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~d------g~  392 (645)
                      +++...                      .+..|++||+.+++...+..+...+..+.|+| +|+.|+....+      ..
T Consensus       138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~  217 (388)
T 3pe7_A          138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR  217 (388)
T ss_dssp             EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred             eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence            876432                      34679999999998888888888899999999 99998887754      36


Q ss_pred             EEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC----eEEEEECCccee-eE-eecCCC---CC
Q 006424          393 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS----KLRILDGVDVIH-KF-KGLPKS---GS  463 (645)
Q Consensus       393 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg----~I~iwd~~~~~~-~~-~~~~~~---~~  463 (645)
                      |.++|..+.....    +...  .....+..+.|+|+|..+++++..++    .|++||+..... .+ ....+.   ..
T Consensus       218 l~~~d~~~~~~~~----l~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~  291 (388)
T 3pe7_A          218 MWLINEDGTNMRK----VKTH--AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSN  291 (388)
T ss_dssp             EEEEETTSCCCEE----SCCC--CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEEC
T ss_pred             EEEEeCCCCceEE----eeeC--CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeec
Confidence            7777776544321    1111  00124778899999844444444332    399999874332 11 111100   00


Q ss_pred             eEEEEEecCCCEEEEE---------eCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccC
Q 006424          464 QMSASFTTTGKHIISI---------GDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLC  532 (645)
Q Consensus       464 i~~v~~sp~~~~l~t~---------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~  532 (645)
                      .....|+|||+.|+..         ..+..|++||+.+++.....................+..++|+|||..|+..+
T Consensus       292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s  369 (388)
T 3pe7_A          292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS  369 (388)
T ss_dssp             TTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence            1123799999988854         45678999999876421111000000000000001245667888888777444

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=7.5e-19  Score=198.40  Aligned_cols=285  Identities=9%  Similarity=0.086  Sum_probs=181.8

Q ss_pred             EEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCC----cEEEEEEeeCCCCEEEEEeC---------CCcEEEEeCC
Q 006424          292 DLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN----YVTCVQFNPIDDNYFISGSI---------DGKVRIWGVC  358 (645)
Q Consensus       292 ~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----~v~~l~~~p~~~~~l~s~s~---------dg~i~vwd~~  358 (645)
                      +++|+|++.++..+.|++|++||+.+++....+.+..    .+.+++|+| ++++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6799999977777789999999999999887776443    389999999 9999998876         6899999999


Q ss_pred             CCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc----cCC---------CCeEEEE
Q 006424          359 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK----TSG---------NKITGIQ  425 (645)
Q Consensus       359 ~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~---------~~i~~i~  425 (645)
                      +++..........+..++|+|||+.|+.+. ++.|++|++.++....  +...+...    ++.         ....++.
T Consensus        99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~--l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A           99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ--ITFNGRENKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE--CCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE--EecCCCcCCeEcccccceeeeecccCcccEE
Confidence            988732122235688999999999999885 7899999998765422  11111100    000         1225899


Q ss_pred             EcCCCCcEEEEEECCC----------------------------------eEEEEECCccee----eEe----ecCCCCC
Q 006424          426 FSRDESQRIMITSEDS----------------------------------KLRILDGVDVIH----KFK----GLPKSGS  463 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg----------------------------------~I~iwd~~~~~~----~~~----~~~~~~~  463 (645)
                      |+||| ++|++++.|.                                  .|++||+.....    .+.    ...+...
T Consensus       176 wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          176 WSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             ECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             ECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            99998 7888776542                                  788999875432    111    1236677


Q ss_pred             eEEEEEecCCCEEEEEeCC----ccEEEEe----CCCCCcCCCcccCCcceeeeeecCCcEE-----EEecCCCCccccc
Q 006424          464 QMSASFTTTGKHIISIGDD----CRVYVWN----YDELCFPSSKQKNSVRSCEHFFSEGVSV-----AVQWPGIGTEQKS  530 (645)
Q Consensus       464 i~~v~~sp~~~~l~t~s~d----g~I~iwd----~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~v~~s~~~~~l~~  530 (645)
                      +..++||||++++++....    ..|++||    ..+++......      .....+++.+.     .++|+|||..++.
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE------HIEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE------EEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe------cccccCCceEccccCCccEECCCCCeEEE
Confidence            8999999998877775433    3588899    66653221110      00001112111     4567777775543


Q ss_pred             c-CCCCccccCccccccccC-CccCCCCccccCccccCCCCCCcCCCCC----CCcCCCCCCcc
Q 006424          531 L-CSSSLRDCSQKWDNLETA-PWIRDSERFSLGSWFSNDGPCRGSATWP----AEKLPLWDVTI  588 (645)
Q Consensus       531 ~-~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~fs~dg~~l~s~s~~----d~~i~iWd~~~  588 (645)
                      . ........+..|+..... ..+......+.++.++ |++.++..+..    ++..++|.+..
T Consensus       329 ~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          329 IFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             EEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            2 111112334444432222 1233333335566677 88866654442    36788898764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=5.2e-17  Score=167.45  Aligned_cols=247  Identities=9%  Similarity=0.026  Sum_probs=165.9

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEEcC-CCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT-SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      ...+..++|+|||++|++++.+ .|.+|++. ++....                                          
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~------------------------------------------   75 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH------------------------------------------   75 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE------------------------------------------
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE------------------------------------------
Confidence            3467889999999999999888 89999986 432110                                          


Q ss_pred             CceeeccCccCeEEEEEcCCCe---EEEEe-------------CCCcEEEEecC-CCeEEEEec-----CCCcEEEEEEe
Q 006424          279 PLQELHGHKGDVLDLAWSNSNY---LLSCS-------------MDKTVRMWQVG-CNQCLNVFD-----HHNYVTCVQFN  336 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~~---l~s~s-------------~dg~I~iwd~~-~~~~~~~~~-----~~~~v~~l~~~  336 (645)
                       +.....+ +.+.+++|+|++.   +++++             .++++.+|++. .++....+.     +...+.+++|+
T Consensus        76 -~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s  153 (365)
T 1jof_A           76 -EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD  153 (365)
T ss_dssp             -EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC
T ss_pred             -eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC
Confidence             0011111 1244578899884   33442             68999999997 465543332     45679999999


Q ss_pred             eCCCCEEEEEeC-CCcEEEEeCC-CCcEEEe---e--ccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecC--Cceee-
Q 006424          337 PIDDNYFISGSI-DGKVRIWGVC-EKRVVDW---A--DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASG--NDLKL-  405 (645)
Q Consensus       337 p~~~~~l~s~s~-dg~i~vwd~~-~~~~~~~---~--~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~--~~~~~-  405 (645)
                      | ++++++++.. ++.|++||+. +++....   .  .+...+..++|+|+|+++++++. ++.+.+|++..  +.... 
T Consensus       154 p-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~  232 (365)
T 1jof_A          154 P-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT  232 (365)
T ss_dssp             T-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             C-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEc
Confidence            9 9998887764 6799999998 6765322   1  13567899999999999988775 68999998863  33221 


Q ss_pred             -eEEe-eccccccCCC------CeEEEE-EcCCCCcEEEEEECC-C-----eEEEEECC-cceee--E-eecCCCCCeEE
Q 006424          406 -EKVD-FHDRKKTSGN------KITGIQ-FSRDESQRIMITSED-S-----KLRILDGV-DVIHK--F-KGLPKSGSQMS  466 (645)
Q Consensus       406 -~~~~-~~~~~~~~~~------~i~~i~-~s~~g~~~l~~~s~d-g-----~I~iwd~~-~~~~~--~-~~~~~~~~i~~  466 (645)
                       ..+. .......+..      .+..++ |+|+| ++|++++.+ +     .|.+|++. +....  . ....+...+..
T Consensus       233 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~  311 (365)
T 1jof_A          233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHS  311 (365)
T ss_dssp             EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTC
T ss_pred             cceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccc
Confidence             1111 1110011111      478999 99998 666666543 3     89999975 22211  1 12123445667


Q ss_pred             EEEec---CCCEEEEEeCC-ccEEEEeCCCC
Q 006424          467 ASFTT---TGKHIISIGDD-CRVYVWNYDEL  493 (645)
Q Consensus       467 v~~sp---~~~~l~t~s~d-g~I~iwd~~~~  493 (645)
                      ++|+|   ||++|++++.+ +.|.+|+++..
T Consensus       312 ~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          312 NAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            89999   89999999864 89999998764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=3.1e-15  Score=148.33  Aligned_cols=247  Identities=11%  Similarity=0.165  Sum_probs=176.6

Q ss_pred             ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       197 ~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      .+|-....+++++++|+++++.+.++.|.+||... ..... +..                                   
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~-~~~-----------------------------------   68 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQ-FGE-----------------------------------   68 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEE-ECC-----------------------------------
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEE-ecc-----------------------------------
Confidence            45667899999999999999988999999999763 11100 000                                   


Q ss_pred             CCCceeeccCccCeEEEEE-cCCCeEEEEeC--CCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          277 ESPLQELHGHKGDVLDLAW-SNSNYLLSCSM--DKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~-s~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                         .....+|...+.++++ .+++.++.++.  ++.|.+|| .+++.+..+.  +...+.+++++| +++++++...++.
T Consensus        69 ---~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~  143 (286)
T 1q7f_A           69 ---CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMR  143 (286)
T ss_dssp             ---BSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTE
T ss_pred             ---cCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCE
Confidence               0001235567889999 46776555553  88999999 5677776664  345789999999 8888888777899


Q ss_pred             EEEEeCCCCcEEEee--ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          352 VRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       352 i~vwd~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      |.+||........+.  .+...+..++++|+|+++++...++.|++||......  ..+...+    +...+..++++++
T Consensus       144 i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~--~~~~~~g----~~~~p~~i~~d~~  217 (286)
T 1q7f_A          144 VIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL--RQIGGEG----ITNYPIGVGINSN  217 (286)
T ss_dssp             EEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE--EEESCTT----TSCSEEEEEECTT
T ss_pred             EEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE--EEEccCC----ccCCCcEEEECCC
Confidence            999997654443332  3445689999999998777777899999999754321  2221111    1256889999999


Q ss_pred             CCcEEEEEECCC-eEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          430 ESQRIMITSEDS-KLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       430 g~~~l~~~s~dg-~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      | .++++...++ .|.+||... ....+........+.+++++|+|+++++ +.|++|++|++...
T Consensus       218 G-~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          218 G-EILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             C-CEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             C-CEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            8 7777777776 999999653 3444444333445789999999987777 57999999998654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.72  E-value=6e-15  Score=151.60  Aligned_cols=230  Identities=11%  Similarity=0.111  Sum_probs=151.0

Q ss_pred             CccCeEEEEEcCCC-eEEEEeCC----CcEEEEecCC--CeEE--EEec-CCCcEEEEEEeeCCCCEEEEEe-CCCcEEE
Q 006424          286 HKGDVLDLAWSNSN-YLLSCSMD----KTVRMWQVGC--NQCL--NVFD-HHNYVTCVQFNPIDDNYFISGS-IDGKVRI  354 (645)
Q Consensus       286 h~~~V~~l~~s~~~-~l~s~s~d----g~I~iwd~~~--~~~~--~~~~-~~~~v~~l~~~p~~~~~l~s~s-~dg~i~v  354 (645)
                      +...+..++|+|++ +|++++.+    +.|.+|++..  ++..  .... +......+++   +++++++++ .++.|.+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence            66778889999998 78888875    7999999865  4432  2332 4456667776   567666665 5789999


Q ss_pred             EeCCCCcEE-E------eec--------cCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCce----e-e------eE
Q 006424          355 WGVCEKRVV-D------WAD--------VRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDL----K-L------EK  407 (645)
Q Consensus       355 wd~~~~~~~-~------~~~--------~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~----~-~------~~  407 (645)
                      |++.....+ .      ..+        +...+.+++|+|+|+++++++ .++.+.+|++.....    . .      ..
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            999753221 1      111        123358899999999776665 478999999976542    1 1      11


Q ss_pred             EeeccccccCCCCeEEEEEcCCCCcEEEEEE-CCCeEEEEECCcce----eeEee-cCCCCCeEEEEEecCCCEEEEEeC
Q 006424          408 VDFHDRKKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVDVI----HKFKG-LPKSGSQMSASFTTTGKHIISIGD  481 (645)
Q Consensus       408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s-~dg~I~iwd~~~~~----~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~  481 (645)
                      ....     .......++|+|+| +++++++ .++.|.+||+....    ..... ..+......++|+|||++|+++..
T Consensus       205 ~~~~-----~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          205 FKVA-----PGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             EECC-----TTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             eecC-----CCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence            1111     23567899999998 6666666 68999999976321    11111 223345789999999999977665


Q ss_pred             --CccEEEEeCCC--CCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424          482 --DCRVYVWNYDE--LCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS  533 (645)
Q Consensus       482 --dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~  533 (645)
                        ++.|.+|+++.  +...         ....+........++|+|+|.+|+....
T Consensus       279 ~~~~~i~v~~~~~~~g~~~---------~~~~~~~g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          279 LKADGVAIFKVDETNGTLT---------KVGYQLTGIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             SSSCEEEEEEECTTTCCEE---------EEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred             CCCCEEEEEEEcCCCCcEE---------EeeEecCCCCCceEEECCCCCEEEEEEC
Confidence              48999999963  2110         1111111223457888898888776654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.72  E-value=2.6e-16  Score=172.99  Aligned_cols=234  Identities=7%  Similarity=0.031  Sum_probs=169.5

Q ss_pred             ccccc-CcEEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          196 IQAHK-GCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       196 l~~H~-~~V~~l~fspdg~~L~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      +..|. ..|.++.|||| +++++++.   +...++|.+....                                      
T Consensus        59 lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~--------------------------------------   99 (582)
T 3o4h_A           59 LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR--------------------------------------   99 (582)
T ss_dssp             CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS--------------------------------------
T ss_pred             eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC--------------------------------------
Confidence            33454 68999999999 78887775   5556776654300                                      


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                          .+... .+..+. .+...+|+|++  .+++.+.++.+.+||+.+++......+..  .+++|+| +|+.+++++.+
T Consensus       100 ----~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~~~  170 (582)
T 3o4h_A          100 ----PGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLGFF  170 (582)
T ss_dssp             ----TTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEEEE
T ss_pred             ----CCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEEEc
Confidence                01111 222111 23345666664  45555555556699999998777665544  8899999 99999988877


Q ss_pred             ----CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC--eEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424          350 ----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  423 (645)
Q Consensus       350 ----g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (645)
                          +.|++||+.+++...+..+...+..++|+|||+.|+++..+|  .|++||+.+....  .  ...    +...+..
T Consensus       171 ~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~--~~~----~~~~~~~  242 (582)
T 3o4h_A          171 GGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--D--LEL----PSKDFSS  242 (582)
T ss_dssp             ETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--E--CCC----SCSHHHH
T ss_pred             CCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--E--ccC----CCcChhh
Confidence                789999999999888888889999999999999999888888  8999999877654  1  111    1233444


Q ss_pred             EE--------EcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCC---ccEEEEeCCC
Q 006424          424 IQ--------FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDE  492 (645)
Q Consensus       424 i~--------~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d---g~I~iwd~~~  492 (645)
                      +.        |+||| .++++++.|+.+++|++  .. ...  ...+.+.+++|+ +++++++++.+   +.+++||..+
T Consensus       243 ~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~-~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          243 YRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GE-RVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             HCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TE-EEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             hhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CC-eec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence            45        99999 89999999999999998  21 111  244678899999 99999998877   4577777664

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.70  E-value=4.1e-16  Score=161.95  Aligned_cols=296  Identities=9%  Similarity=0.002  Sum_probs=182.1

Q ss_pred             CCCceeeccCccCeEE-----EEEcCCC-eEEEEeC-CC--cEEEEecCCCeEEEEecC-CCcEEEEEEeeCCCCEEEEE
Q 006424          277 ESPLQELHGHKGDVLD-----LAWSNSN-YLLSCSM-DK--TVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~-----l~~s~~~-~l~s~s~-dg--~I~iwd~~~~~~~~~~~~-~~~v~~l~~~p~~~~~l~s~  346 (645)
                      +..+..+..|......     .+|+|+| +|+.++. ++  .|.+||+.+++......+ ...+..+.|+| +++.|+.+
T Consensus        20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~   98 (388)
T 3pe7_A           20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYV   98 (388)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEE
T ss_pred             CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEE
Confidence            4445666666665555     7899998 6777776 66  488889999988776653 33444678999 99999999


Q ss_pred             eCCCcEEEEeCCCCcEEEeecc-CCCeEEE--EEccCCCEEEEEe----------------------cCCeEEEEEecCC
Q 006424          347 SIDGKVRIWGVCEKRVVDWADV-RDVISAI--CYIPDGKGFIVGS----------------------ITGTCHFYKASGN  401 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~~~~~-~~~v~~l--~~sp~g~~l~~g~----------------------~dg~i~iwd~~~~  401 (645)
                      +.++.|++||+.+++...+... ...+...  .++|+++.++...                      .++.|.+||+.+.
T Consensus        99 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g  178 (388)
T 3pe7_A           99 KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG  178 (388)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred             eCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence            9999999999999887654433 3334333  3489999887532                      3467899998877


Q ss_pred             ceeeeEEeeccccccCCCCeEEEEEcC-CCCcEEEEEECC------CeEEEEECCcc-eeeEeecCCCCCeEEEEEecCC
Q 006424          402 DLKLEKVDFHDRKKTSGNKITGIQFSR-DESQRIMITSED------SKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTG  473 (645)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~i~~i~~s~-~g~~~l~~~s~d------g~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~  473 (645)
                      ....  +...      ...+..+.|+| +| ..|+....+      ..|.++|.... ...+........+....|+|||
T Consensus       179 ~~~~--l~~~------~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg  249 (388)
T 3pe7_A          179 ESTV--ILQE------NQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDG  249 (388)
T ss_dssp             CEEE--EEEE------SSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTS
T ss_pred             ceEE--eecC------CccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCC
Confidence            5432  2111      25688999999 87 677666653      37888886532 2222221111357788999999


Q ss_pred             CEEEEEeC-C----ccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCC------CccccCcc
Q 006424          474 KHIISIGD-D----CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS------SLRDCSQK  542 (645)
Q Consensus       474 ~~l~t~s~-d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~------~~~~~~~~  542 (645)
                      +.|+..+. +    +.|++||+.+++......... .......+++    .+|+|||..|+....+      .....+.+
T Consensus       250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~~~~----~~~spdg~~l~~~~~~~~~~~~~~~~~i~~  324 (388)
T 3pe7_A          250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA-CSHLMSNYDG----SLMVGDGSDAPVDVQDDSGYKIENDPFLYV  324 (388)
T ss_dssp             SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC-EEEEEECTTS----SEEEEEECCC------------CCCCEEEE
T ss_pred             CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC-ceeeeecCCC----CeEccCCCcceeEeeeccccccCCCCEEEE
Confidence            98866543 2    249999999875322111110 0000011222    2477777777643321      22233445


Q ss_pred             ccccccCC-ccCCCCc-----------cccCccccCCCCCCcCCCCCCCcCCCCCCc
Q 006424          543 WDNLETAP-WIRDSER-----------FSLGSWFSNDGPCRGSATWPAEKLPLWDVT  587 (645)
Q Consensus       543 w~~~~~~~-~~~~~~~-----------~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~  587 (645)
                      |+...... .+..+..           .+...+|||||+.++..+..++...+|.+.
T Consensus       325 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          325 FNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             EETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             EeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            55432211 2222222           467889999999887665546777777544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.69  E-value=1.2e-15  Score=155.53  Aligned_cols=227  Identities=8%  Similarity=0.022  Sum_probs=157.2

Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCC--cEEEEEEeeCCCCEEE-EEeCCCcEEEEeCCCCcEEEeecc
Q 006424          293 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFI-SGSIDGKVRIWGVCEKRVVDWADV  368 (645)
Q Consensus       293 l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~--~v~~l~~~p~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~  368 (645)
                      +++++++ .+++++.+++|.+||+.+++.+..+....  .+..++|+| +++.++ ++..++.|.+||+.+++.......
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            3556666 78899999999999999999988886554  688999999 887654 555689999999998887654332


Q ss_pred             -------CCCeEEEEEccCCCEEEEEecC------------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          369 -------RDVISAICYIPDGKGFIVGSIT------------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       369 -------~~~v~~l~~sp~g~~l~~g~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                             ...+..++|+|+|+++++++.+            +.|.+||+.+............     ...+.+++|+|+
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~s~d  158 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-----PRQVYLMRAADD  158 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-----CSSCCCEEECTT
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-----CCcccceeECCC
Confidence                   2237889999999999998865            8999999987443211111111     235788999999


Q ss_pred             CCcEEEEEECCCeEEEEECCcce--eeEeecC------------------------------------------------
Q 006424          430 ESQRIMITSEDSKLRILDGVDVI--HKFKGLP------------------------------------------------  459 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~------------------------------------------------  459 (645)
                      | . +++++  +.|++||..+..  ..+....                                                
T Consensus       159 g-~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          159 G-S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             S-C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             C-c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence            8 5 45543  349999976432  2221110                                                


Q ss_pred             ------------------CCCCeEEEEEec-CCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEe
Q 006424          460 ------------------KSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ  520 (645)
Q Consensus       460 ------------------~~~~i~~v~~sp-~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~  520 (645)
                                        ....+.+++|+| ++++++++  ++.|++||+.+++....           +........++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~-----------~~~~~~~~~~~  301 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA-----------ANLDHTYYCVA  301 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE-----------EECSSCCCEEE
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE-----------EcCCCCccceE
Confidence                              011455778889 99999988  88999999987632111           11122345788


Q ss_pred             cCCCCccccccCCCCccccCccccc
Q 006424          521 WPGIGTEQKSLCSSSLRDCSQKWDN  545 (645)
Q Consensus       521 ~s~~~~~l~~~~~~~~~~~~~~w~~  545 (645)
                      |+|++..|+..+.+   ..+.+|+.
T Consensus       302 ~s~dg~~l~~~~~~---~~v~v~d~  323 (349)
T 1jmx_B          302 FDKKGDKLYLGGTF---NDLAVFNP  323 (349)
T ss_dssp             ECSSSSCEEEESBS---SEEEEEET
T ss_pred             ECCCCCEEEEecCC---CeEEEEec
Confidence            89998888764433   44566665

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=4.4e-15  Score=165.80  Aligned_cols=247  Identities=9%  Similarity=-0.009  Sum_probs=171.3

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEE--eCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sg--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      .+.+.+|...|..++|++++-++++.  +.++...||....+                                      
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------------------   57 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--------------------------------------   57 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--------------------------------------
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--------------------------------------
Confidence            45577899999999999887777777  66889999986431                                      


Q ss_pred             CceeccCCCceeeccCccCeE---------EEEEc--CCC-e-EEEEeC-CCcEEEEecC--C-CeEEEEec-----CCC
Q 006424          271 EVFQIEESPLQELHGHKGDVL---------DLAWS--NSN-Y-LLSCSM-DKTVRMWQVG--C-NQCLNVFD-----HHN  328 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~---------~l~~s--~~~-~-l~s~s~-dg~I~iwd~~--~-~~~~~~~~-----~~~  328 (645)
                             .....+..|...+.         ...|+  ||+ . |+.++. +..|.+|++.  . +.......     +..
T Consensus        58 -------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~  130 (662)
T 3azo_A           58 -------GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGL  130 (662)
T ss_dssp             -------SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCE
T ss_pred             -------CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCc
Confidence                   11233333433333         45555  887 6 565543 5667777766  3 44433333     466


Q ss_pred             cEEEEEEeeCCCCEEEEEeCC----------CcEEEEeCCC------CcEEEee-ccCCCeEEEEEccCCCEEEEEecC-
Q 006424          329 YVTCVQFNPIDDNYFISGSID----------GKVRIWGVCE------KRVVDWA-DVRDVISAICYIPDGKGFIVGSIT-  390 (645)
Q Consensus       329 ~v~~l~~~p~~~~~l~s~s~d----------g~i~vwd~~~------~~~~~~~-~~~~~v~~l~~sp~g~~l~~g~~d-  390 (645)
                      .+..++|+| +++.|++++.+          ..|++||+.+      ++...+. .+...+..++|+|||++|+.++.+ 
T Consensus       131 ~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~  209 (662)
T 3azo_A          131 RWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDH  209 (662)
T ss_dssp             EEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECT
T ss_pred             cccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCC
Confidence            789999999 99999988876          5899999998      7777777 667788899999999999987755 


Q ss_pred             -------CeEEEEEec-CCce-eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC--eEEEEECCcce-eeEeec
Q 006424          391 -------GTCHFYKAS-GNDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVI-HKFKGL  458 (645)
Q Consensus       391 -------g~i~iwd~~-~~~~-~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg--~I~iwd~~~~~-~~~~~~  458 (645)
                             ..|.+||+. ++.. ....+...     +...+..+.|+||| +++++++.++  .|++||..... ..+.. 
T Consensus       210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-----~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-  282 (662)
T 3azo_A          210 PRMPWEGTELKTARVTEDGRFADTRTLLGG-----PEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQLCR-  282 (662)
T ss_dssp             TCCTTTCEEEEEEEECTTSCEEEEEEEEEE-----TTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEEESSC-
T ss_pred             CCCCCCCcEEEEEEECCCCcccccEEeCCC-----CCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCceeeccc-
Confidence                   379999998 3421 11122111     13578899999998 5888888888  66667653221 11111 


Q ss_pred             CCCCC--------eEEEEEecCCCEEEEEeCCccEEEE--eCCCC
Q 006424          459 PKSGS--------QMSASFTTTGKHIISIGDDCRVYVW--NYDEL  493 (645)
Q Consensus       459 ~~~~~--------i~~v~~sp~~~~l~t~s~dg~I~iw--d~~~~  493 (645)
                      .+...        +..++|+|+++++++++. +.++||  |+.++
T Consensus       283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~  326 (662)
T 3azo_A          283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG  326 (662)
T ss_dssp             CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred             ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence            11111        467899999999999998 999999  55444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=1e-15  Score=159.20  Aligned_cols=236  Identities=11%  Similarity=0.102  Sum_probs=156.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          201 GCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      ..+.+++|||||++|+.++.+   ..|.+||+.++..                                           
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~-------------------------------------------   72 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA-------------------------------------------   72 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-------------------------------------------
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-------------------------------------------
Confidence            347788999999998877543   3678888776321                                           


Q ss_pred             CCceeeccCccC-eEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEE-------------------EEE
Q 006424          278 SPLQELHGHKGD-VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTC-------------------VQF  335 (645)
Q Consensus       278 ~~~~~l~~h~~~-V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~-------------------l~~  335 (645)
                         ..+..+... ...+.|+|++ .|+.++.++.|++||+.+++...... +......                   +.|
T Consensus        73 ---~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~  149 (396)
T 3c5m_A           73 ---VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDW  149 (396)
T ss_dssp             ---EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred             ---EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccccccccccc
Confidence               122222222 3347899998 88899999999999999887665554 3332222                   245


Q ss_pred             eeCCCCEEEEE-----eCCCcEEEEeCCCCcEEEeeccCCCeEEEEEcc-CCCEEEEEecC------CeEEEEEecCCce
Q 006424          336 NPIDDNYFISG-----SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSIT------GTCHFYKASGNDL  403 (645)
Q Consensus       336 ~p~~~~~l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~d------g~i~iwd~~~~~~  403 (645)
                      +| +++.++.+     ..+..|++||+.+++...+..+...+..+.|+| +++.++..+.+      ..|.+||+.+...
T Consensus       150 sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~  228 (396)
T 3c5m_A          150 QP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV  228 (396)
T ss_dssp             CC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred             CC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence            66 66655443     356689999999988877777778899999999 78877776644      3578888765442


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-----CeEEEEECCccee-eEeecCCCCCeEEEEEec-CCCEE
Q 006424          404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILDGVDVIH-KFKGLPKSGSQMSASFTT-TGKHI  476 (645)
Q Consensus       404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-----g~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp-~~~~l  476 (645)
                      ..    +...  .....+..+.|+|+| ..|+.++.+     +.|++||+..... .+...  . ... +.|+| +|+++
T Consensus       229 ~~----l~~~--~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~-~~~-~~~s~~dg~~l  297 (396)
T 3c5m_A          229 RK----IKEH--AEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVMVM--P-PCS-HLMSNFDGSLM  297 (396)
T ss_dssp             EE----SSCC--CTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC--C-SEE-EEEECSSSSEE
T ss_pred             eE----eecc--CCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEeeeC--C-CCC-CCccCCCCceE
Confidence            21    1110  001357789999998 555554433     4599999864322 22211  1 233 89999 99998


Q ss_pred             EEEe----------------CCccEEEEeCCCCC
Q 006424          477 ISIG----------------DDCRVYVWNYDELC  494 (645)
Q Consensus       477 ~t~s----------------~dg~I~iwd~~~~~  494 (645)
                      ++++                .++.|++||+.++.
T Consensus       298 ~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          298 VGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             EEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             EEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence            8765                34789999998764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.66  E-value=2.3e-14  Score=147.04  Aligned_cols=249  Identities=12%  Similarity=0.115  Sum_probs=165.4

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCc
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  263 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (645)
                      .++..+..+  .++|+|||++|++++          .++.|.+||..+.+..                            
T Consensus        45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~----------------------------   94 (361)
T 2oiz_A           45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE----------------------------   94 (361)
T ss_dssp             EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE----------------------------
T ss_pred             EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE----------------------------
Confidence            345555555  899999999999886          3678999998864332                            


Q ss_pred             ceeecCCCceeccCCCceeecc------CccCeEEEEEcCCC-eEEEEeC--CCcEEEEecCCCeEEEE-ecCCCcEEEE
Q 006424          264 VPVVIPDEVFQIEESPLQELHG------HKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNV-FDHHNYVTCV  333 (645)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~l~~------h~~~V~~l~~s~~~-~l~s~s~--dg~I~iwd~~~~~~~~~-~~~~~~v~~l  333 (645)
                                       ..+..      +......++++|++ +|+++..  +++|.+||+.+++.+.. +..... ..+
T Consensus        95 -----------------~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v  156 (361)
T 2oiz_A           95 -----------------KEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSV  156 (361)
T ss_dssp             -----------------EEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEE
T ss_pred             -----------------EEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-cee
Confidence                             22211      22456678999998 7776653  68999999999999888 765443 335


Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEeCCC-CcEEEe------eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424          334 QFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDW------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  406 (645)
Q Consensus       334 ~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~~~------~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~  406 (645)
                      .+.|.....+++.+.||.+.+|+... ++....      .........+.+++++..++..+.++.+.++|+........
T Consensus       157 ~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~  236 (361)
T 2oiz_A          157 IPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVD  236 (361)
T ss_dssp             EECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEE
T ss_pred             EEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceec
Confidence            67773447888899999999999865 554411      11111122334467888888888899999999976543221


Q ss_pred             -EEeecccccc----CCCCeEEEEEcCCCCcEEEEEE----------CCCeEEEEECCcceeeEeecCCCCCeEEEEEec
Q 006424          407 -KVDFHDRKKT----SGNKITGIQFSRDESQRIMITS----------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT  471 (645)
Q Consensus       407 -~~~~~~~~~~----~~~~i~~i~~s~~g~~~l~~~s----------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp  471 (645)
                       .+........    .......++|+|++...+++..          ..+.|.+||..+.........+.  +.+++|+|
T Consensus       237 ~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp  314 (361)
T 2oiz_A          237 GPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ  314 (361)
T ss_dssp             EEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET
T ss_pred             ccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC
Confidence             1111110000    0011123689999744444443          13589999987654444433344  89999999


Q ss_pred             CCCEEEEEeCCccEEEEeCCCC
Q 006424          472 TGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       472 ~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ||++|++++. +.|.+||..++
T Consensus       315 dg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          315 QRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             TTTEEEEECS-SCEEEEECSSS
T ss_pred             CCCEEEEeCC-CeEEEEECCCC
Confidence            9999999887 99999999887

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.66  E-value=2.6e-14  Score=147.16  Aligned_cols=199  Identities=9%  Similarity=0.125  Sum_probs=138.2

Q ss_pred             CccCeEEEEEcCCC-eEEEEeCCCcEEEEecC-CCeEEEEecC--CCcEEEEEEeeCCCCE--EEEEe------------
Q 006424          286 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG-CNQCLNVFDH--HNYVTCVQFNPIDDNY--FISGS------------  347 (645)
Q Consensus       286 h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~-~~~~~~~~~~--~~~v~~l~~~p~~~~~--l~s~s------------  347 (645)
                      +...+..++|+|++ +|++++.+ .|.+|++. +++......+  .+.+.+++|+| ++++  +++++            
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceee
Confidence            33467889999998 68888887 99999997 7876554432  13356689999 8884  44543            


Q ss_pred             -CCCcEEEEeCC-CCcEEEee-----ccCCCeEEEEEccCCCEEEEEec-CCeEEEEEec-CCceee-eEEeeccccccC
Q 006424          348 -IDGKVRIWGVC-EKRVVDWA-----DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKAS-GNDLKL-EKVDFHDRKKTS  417 (645)
Q Consensus       348 -~dg~i~vwd~~-~~~~~~~~-----~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~-~~~~~~-~~~~~~~~~~~~  417 (645)
                       .++.+.+|++. .+++....     .+...+.+++|+|+|++++++.. ++.|.+|++. ++.... ..+...    .+
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~----~~  191 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP----DP  191 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS----ST
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC----CC
Confidence             68999999997 35543321     24567999999999998888764 6799999998 554321 111111    12


Q ss_pred             CCCeEEEEEcCCCCcEEEEEEC-CCeEEEEECC--ccee-----eEeecC-----CCC------CeEEEE-EecCCCEEE
Q 006424          418 GNKITGIQFSRDESQRIMITSE-DSKLRILDGV--DVIH-----KFKGLP-----KSG------SQMSAS-FTTTGKHII  477 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~-dg~I~iwd~~--~~~~-----~~~~~~-----~~~------~i~~v~-~sp~~~~l~  477 (645)
                      ...+..++|+|+| +++++++. ++.|.+|+..  +...     .+....     +..      .+..++ |+|||++|+
T Consensus       192 g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~  270 (365)
T 1jof_A          192 GDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             TCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence            3568999999998 66766664 7899999754  2211     122111     111      478999 999999988


Q ss_pred             EEeCC-c-----cEEEEeCC
Q 006424          478 SIGDD-C-----RVYVWNYD  491 (645)
Q Consensus       478 t~s~d-g-----~I~iwd~~  491 (645)
                      +++.+ +     .|.+|+++
T Consensus       271 v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          271 ASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEEC
T ss_pred             EECCCCCCCCCCeEEEEEEC
Confidence            77643 2     89999996

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.65  E-value=4.2e-14  Score=143.29  Aligned_cols=201  Identities=11%  Similarity=0.071  Sum_probs=140.1

Q ss_pred             cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe-EEEEec----------CCCcEEEEEEeeCCCCEEEEEe-CCCc
Q 006424          285 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVFD----------HHNYVTCVQFNPIDDNYFISGS-IDGK  351 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~-~~~~~~----------~~~~v~~l~~~p~~~~~l~s~s-~dg~  351 (645)
                      ++-.....+++++++ .+++...++.|++||..... .+..+.          +-.....++++|.+++++++.+ .++.
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            344578899999988 66677778999999986542 444442          2336889999985577777775 6899


Q ss_pred             EEEEeCCCCcEEEeec-c----------CCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424          352 VRIWGVCEKRVVDWAD-V----------RDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  419 (645)
Q Consensus       352 i~vwd~~~~~~~~~~~-~----------~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  419 (645)
                      |++||.. +....... .          -.....++++|+ +.++++...++.|++||..+..... .+...    .+..
T Consensus       168 I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~-~~~~~----~~~~  241 (329)
T 3fvz_A          168 IVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR-EIKHA----SFGR  241 (329)
T ss_dssp             EEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECCT----TTTT
T ss_pred             EEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE-EEecc----ccCC
Confidence            9999954 44443322 1          234889999998 6666667778899999998554422 22211    2246


Q ss_pred             CeEEEEEcCCCCcEEEEEE-------CCCeEEEEECCcceeeEee---cCCCCCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          420 KITGIQFSRDESQRIMITS-------EDSKLRILDGVDVIHKFKG---LPKSGSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       420 ~i~~i~~s~~g~~~l~~~s-------~dg~I~iwd~~~~~~~~~~---~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                      .+..++|+| + ..+.+.+       .+..|++||..+.......   ..+...+.+++++|+|.++++...+++|++|+
T Consensus       242 ~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          242 NVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             CEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             CcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence            788999999 4 3444433       3458999997643322222   23566789999999998888888999999999


Q ss_pred             CCCC
Q 006424          490 YDEL  493 (645)
Q Consensus       490 ~~~~  493 (645)
                      +...
T Consensus       320 ~~~~  323 (329)
T 3fvz_A          320 LTEK  323 (329)
T ss_dssp             EEEC
T ss_pred             CCcc
Confidence            8653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.63  E-value=6.1e-15  Score=166.68  Aligned_cols=200  Identities=8%  Similarity=0.130  Sum_probs=143.2

Q ss_pred             cCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCC-----cEEEEEEeeCCCCEEEEEeCC---------Cc
Q 006424          288 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHN-----YVTCVQFNPIDDNYFISGSID---------GK  351 (645)
Q Consensus       288 ~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~-----~v~~l~~~p~~~~~l~s~s~d---------g~  351 (645)
                      ....++.|+|++ +++++  |++|++||+.++++...+. |..     ....+.|+| |+++|+.++.+         +.
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceE
Confidence            346688999998 55554  9999999999998877664 321     224478999 99999998876         56


Q ss_pred             EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc----cCC---------
Q 006424          352 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK----TSG---------  418 (645)
Q Consensus       352 i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~---------  418 (645)
                      +.+||+.+++...+..+...+...+|||||+.||.+ .++.|++|++.+.....  +...+...    .+.         
T Consensus        94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~--lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR--ITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE--CCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE--EcCCCCccceecCcccccccchhc
Confidence            779999999988888888899999999999999888 47899999998765322  11111100    000         


Q ss_pred             CCeEEEEEcCCCCcEEEEEECC-C-----------------------------------eEEEEECCc---ce--eeEee
Q 006424          419 NKITGIQFSRDESQRIMITSED-S-----------------------------------KLRILDGVD---VI--HKFKG  457 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~d-g-----------------------------------~I~iwd~~~---~~--~~~~~  457 (645)
                      .....+.||||| +.|+.++.| +                                   .|++||+..   ..  .....
T Consensus       171 ~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l  249 (740)
T 4a5s_A          171 SAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI  249 (740)
T ss_dssp             SSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred             CCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence            122458999998 677766432 1                                   577888765   31  12222


Q ss_pred             c------CCCCCeEEEEEecCCCEEEEEeC----CccEEEEeCCCCC
Q 006424          458 L------PKSGSQMSASFTTTGKHIISIGD----DCRVYVWNYDELC  494 (645)
Q Consensus       458 ~------~~~~~i~~v~~sp~~~~l~t~s~----dg~I~iwd~~~~~  494 (645)
                      .      .+...+..++|+|||+.++....    +..|++||+.+++
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            1      25667899999999997776543    3479999998875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.63  E-value=2.2e-13  Score=135.75  Aligned_cols=239  Identities=10%  Similarity=0.055  Sum_probs=168.3

Q ss_pred             cccccccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          194 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      ..+..+.....+++|+|+|+ +++++..++.|..|+..++                                        
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----------------------------------------   60 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----------------------------------------   60 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----------------------------------------
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----------------------------------------
Confidence            33445666788999999998 7888888999999998752                                        


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCCeEEEE-eCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEE
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSC-SMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~  346 (645)
                             ...+..+...+.++++++++.++.+ ..++.|.+||..+++......     ....+..++++| +++++++.
T Consensus        61 -------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd  132 (296)
T 3e5z_A           61 -------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSD  132 (296)
T ss_dssp             -------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEE
T ss_pred             -------eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEEC
Confidence                   3444456677899999999854444 456899999998887654432     123467899999 89888873


Q ss_pred             ----e-------------CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEec-CCce-eeeE
Q 006424          347 ----S-------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDL-KLEK  407 (645)
Q Consensus       347 ----s-------------~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~-~~~~-~~~~  407 (645)
                          +             ..+.|..++.. ++.............++|+|+|+.+++.+.++.|.+|++. .... ....
T Consensus       133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~  211 (296)
T 3e5z_A          133 PTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV  211 (296)
T ss_dssp             CSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEE
T ss_pred             CccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCe
Confidence                2             13467777766 6666666666778999999999988777778999999997 3332 1111


Q ss_pred             EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEE-ecCCCEEEEEeCCccE
Q 006424          408 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASF-TTTGKHIISIGDDCRV  485 (645)
Q Consensus       408 ~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~-sp~~~~l~t~s~dg~I  485 (645)
                      . +..    ....+.+++++++| +++++.  ++.|.+||... ....+..  +.. +.+++| +|+++.|++++.++ +
T Consensus       212 ~-~~~----~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~~-l  279 (296)
T 3e5z_A          212 H-FTV----EPGKTDGLRVDAGG-LIWASA--GDGVHVLTPDGDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVSTE-F  279 (296)
T ss_dssp             E-ECC----SSSCCCSEEEBTTS-CEEEEE--TTEEEEECTTSCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETTE-E
T ss_pred             E-eeC----CCCCCCeEEECCCC-CEEEEc--CCeEEEECCCCCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCCe-E
Confidence            1 111    23456789999998 555544  88999999763 2233333  444 889999 58999999888764 4


Q ss_pred             EEEeCCCC
Q 006424          486 YVWNYDEL  493 (645)
Q Consensus       486 ~iwd~~~~  493 (645)
                      .-++..+.
T Consensus       280 ~~~~~~~~  287 (296)
T 3e5z_A          280 WSIETNVR  287 (296)
T ss_dssp             EEEECSCC
T ss_pred             EEEEcccc
Confidence            44455544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.62  E-value=6e-13  Score=134.88  Aligned_cols=242  Identities=10%  Similarity=0.070  Sum_probs=164.3

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      ..+.++...+.+++|+|+|++++++..++.|.+||..++..                                       
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~---------------------------------------   78 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---------------------------------------   78 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------------------------------------
T ss_pred             EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---------------------------------------
Confidence            34556777789999999999888888999999999876321                                       


Q ss_pred             eccCCCceeeccCccCeEEEEEcCCCeE-EEEeCC----CcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEE
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNSNYL-LSCSMD----KTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~~~l-~s~s~d----g~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s  345 (645)
                            ......+...+.++++++++.+ ++...+    +.|.+||.+++.....+.   ....+.+++++| +++++++
T Consensus        79 ------~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~  151 (333)
T 2dg1_A           79 ------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFT  151 (333)
T ss_dssp             ------EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEE
T ss_pred             ------EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEE
Confidence                  1112245678999999999854 444444    589999998776543332   445789999999 8887776


Q ss_pred             EeC------CCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEE--eecccccc
Q 006424          346 GSI------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKV--DFHDRKKT  416 (645)
Q Consensus       346 ~s~------dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~  416 (645)
                      ...      .+.|..+|..+++...+......+..++|+|+|+.++++ +.++.|.+||+.........+  ........
T Consensus       152 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  231 (333)
T 2dg1_A          152 DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG  231 (333)
T ss_dssp             ECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred             eccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence            653      356777777766665554444568899999999866655 457899999996421111111  00000000


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-eeeEeecC----CCCCeEEEEEecCCCEEEEEeCCc
Q 006424          417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLP----KSGSQMSASFTTTGKHIISIGDDC  483 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~----~~~~i~~v~~sp~~~~l~t~s~dg  483 (645)
                       ...+..++++++| .++++...++.|.+||.... ...+....    +...+.+++|+|+++.|+.++.++
T Consensus       232 -~~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          232 -HEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             -SSEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             -CCCCCceEECCCC-CEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence             1357889999998 67777778899999997532 23333211    111578999999987777666553

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.61  E-value=8e-14  Score=141.37  Aligned_cols=234  Identities=13%  Similarity=0.125  Sum_probs=165.0

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      ..|.++.|++++..++..+.++.++.|.                                                ....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~   37 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT------------------------------------------------AEPW   37 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE------------------------------------------------CEEE
T ss_pred             cccceeeecCCccceeEEeecccCcccc------------------------------------------------ccee
Confidence            3467788888887777777788888882                                                1224


Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCC----CcEEE
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID----GKVRI  354 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~d----g~i~v  354 (645)
                      ..+.++...+.+++|++++ .++++..++.|.+||..+++..... .+...+.+++++| +++++++...+    +.|.+
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEE
T ss_pred             EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEE
Confidence            4555666778999999988 4557778899999999988776554 4667899999999 88888777666    68999


Q ss_pred             EeCCCCcEEEee---ccCCCeEEEEEccCCCEEEEEec------CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          355 WGVCEKRVVDWA---DVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       355 wd~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      ||..++......   .....+..+.++|+|+++++...      .+.|..+|..+.....  +. ..     ...+..++
T Consensus       117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~-~~-----~~~~~~i~  188 (333)
T 2dg1_A          117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--II-QN-----ISVANGIA  188 (333)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EE-EE-----ESSEEEEE
T ss_pred             EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--ee-cC-----CCcccceE
Confidence            999887765332   23457899999999987766543      2455555554433221  11 11     13578899


Q ss_pred             EcCCCCcEEEEEECCCeEEEEECCc---ceeeE-----eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          426 FSRDESQRIMITSEDSKLRILDGVD---VIHKF-----KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg~I~iwd~~~---~~~~~-----~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      |+|+|..++++.+.++.|++||...   ....+     ........+..++++++|+++++...++.|.+||.+
T Consensus       189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            9999833455556688999999742   12111     111112467889999999988888888999999974

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.60  E-value=2.1e-13  Score=139.93  Aligned_cols=268  Identities=10%  Similarity=0.045  Sum_probs=169.8

Q ss_pred             ceeeccCccCeEEEEEcCCC-eEEEEe----------CCCcEEEEecCCCeEEEEec-------CCCcEEEEEEeeCCCC
Q 006424          280 LQELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDN  341 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s----------~dg~I~iwd~~~~~~~~~~~-------~~~~v~~l~~~p~~~~  341 (645)
                      +..+..+..+  .++|+|++ +++++.          .+++|.+||..+++.+..+.       +......++++| +++
T Consensus        44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~  120 (361)
T 2oiz_A           44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGK  120 (361)
T ss_dssp             EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSS
T ss_pred             EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCC
Confidence            3445545555  89999998 677665          36789999999988887764       234567899999 999


Q ss_pred             EEEEEeC--CCcEEEEeCCCCcEEEe-eccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424          342 YFISGSI--DGKVRIWGVCEKRVVDW-ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  417 (645)
Q Consensus       342 ~l~s~s~--dg~i~vwd~~~~~~~~~-~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  417 (645)
                      +|+++..  ++.|.+||+.+++.+.. ...... ..+.+.|++ ..+++.+.||.+.+|+....................
T Consensus       121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~  199 (361)
T 2oiz_A          121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK  199 (361)
T ss_dssp             EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT
T ss_pred             EEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC
Confidence            9988874  57899999999988765 554433 335667766 677888899999999986532222111100000001


Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce----eeEeecC----C----CCCeEEEEEecCCCEEEEEeC----
Q 006424          418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----HKFKGLP----K----SGSQMSASFTTTGKHIISIGD----  481 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~----~----~~~i~~v~~sp~~~~l~t~s~----  481 (645)
                      ..+ ..+.+++++ ..++..+.++.|.++|.....    ..+....    .    ......++|+|+++.++++..    
T Consensus       200 ~~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~  277 (361)
T 2oiz_A          200 DDP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK  277 (361)
T ss_dssp             TSC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred             CCc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence            111 233346666 566667788999999975321    1111100    0    011123789999888877643    


Q ss_pred             -------CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCcccccccc--CC--
Q 006424          482 -------DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET--AP--  550 (645)
Q Consensus       482 -------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~--~~--  550 (645)
                             .+.|.+||+.+.+....           +.-.+ ..+++|+|||.+|+..+.    ..+.+|+....  ..  
T Consensus       278 ~~~~~~~~~~v~viD~~t~~~v~~-----------i~~~~-p~~ia~spdg~~l~v~n~----~~v~v~D~~t~~l~~~~  341 (361)
T 2oiz_A          278 EGTHKFPAAEIWVMDTKTKQRVAR-----------IPGRD-ALSMTIDQQRNLMLTLDG----GNVNVYDISQPEPKLLR  341 (361)
T ss_dssp             TTCTTCCCSEEEEEETTTTEEEEE-----------EECTT-CCEEEEETTTTEEEEECS----SCEEEEECSSSSCEEEE
T ss_pred             cccccCCCceEEEEECCCCcEEEE-----------EecCC-eeEEEECCCCCEEEEeCC----CeEEEEECCCCcceeeE
Confidence                   34899999987742211           11122 567888888888886653    55667766443  22  


Q ss_pred             ccCCCCccccCccccCCCC
Q 006424          551 WIRDSERFSLGSWFSNDGP  569 (645)
Q Consensus       551 ~~~~~~~~~~~~~fs~dg~  569 (645)
                      .+...+.....++|+|||+
T Consensus       342 ~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          342 TIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EETTSCSSEEEEEECCCSC
T ss_pred             EeccCCCCcEEEEecCCCC
Confidence            2234455667788999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.58  E-value=3.2e-13  Score=151.91  Aligned_cols=242  Identities=12%  Similarity=0.124  Sum_probs=166.7

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      +|...+..++|||||++||.++.++     .|++||+.++...                                     
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~-------------------------------------  164 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL-------------------------------------  164 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE-------------------------------------
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------------------
Confidence            4556789999999999999776543     8999999874321                                     


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCc----------------EEEEecCCCeE--EEEec---CCCcE
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT----------------VRMWQVGCNQC--LNVFD---HHNYV  330 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~----------------I~iwd~~~~~~--~~~~~---~~~~v  330 (645)
                              .... ....+..++|+||+ .|+.++.++.                |++|++.+++.  ...+.   +...+
T Consensus       165 --------~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~  235 (710)
T 2xdw_A          165 --------PDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM  235 (710)
T ss_dssp             --------EEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred             --------cccc-cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence                    1111 11236779999998 7888877766                99999988762  22222   45568


Q ss_pred             EEEEEeeCCCCEEEEEeC-----CCcEEEEeCCC------C--cEEEeeccCCCeEEEEEccCCCEEEEEecC----CeE
Q 006424          331 TCVQFNPIDDNYFISGSI-----DGKVRIWGVCE------K--RVVDWADVRDVISAICYIPDGKGFIVGSIT----GTC  393 (645)
Q Consensus       331 ~~l~~~p~~~~~l~s~s~-----dg~i~vwd~~~------~--~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d----g~i  393 (645)
                      ..+.|+| ++++|+.++.     +..|++||+.+      +  ....+..+...+.. .|+|+|+.|+..+..    +.|
T Consensus       236 ~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l  313 (710)
T 2xdw_A          236 GGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRL  313 (710)
T ss_dssp             EEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEE
T ss_pred             EEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEE
Confidence            8999999 9998887765     56899999976      4  45556666655554 488999988877653    369


Q ss_pred             EEEEecCCcee-eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCe--EEEEECCcc--eeeEeecCCCCCeEEEE
Q 006424          394 HFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--LRILDGVDV--IHKFKGLPKSGSQMSAS  468 (645)
Q Consensus       394 ~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~--I~iwd~~~~--~~~~~~~~~~~~i~~v~  468 (645)
                      .+||+.+.... ...+..+..    ...+..+.|++++ .++++...|+.  |++||....  ...+..  +.+.+..+.
T Consensus       314 ~~~d~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~  386 (710)
T 2xdw_A          314 INIDFTDPEESKWKVLVPEHE----KDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGALLKIFPL--EVGSVVGYS  386 (710)
T ss_dssp             EEEETTSCCGGGCEEEECCCS----SCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCCEEEEECC--CSSEEEEEE
T ss_pred             EEEeCCCCCcccceeccCCCC----CCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCCEEEecCC--CCceEEEEe
Confidence            99998765421 111111110    1357788998765 78888888874  566776332  333333  466788899


Q ss_pred             EecCCCEEEEE-e---CCccEEEEeCCCCC
Q 006424          469 FTTTGKHIISI-G---DDCRVYVWNYDELC  494 (645)
Q Consensus       469 ~sp~~~~l~t~-s---~dg~I~iwd~~~~~  494 (645)
                      ++|+++.++.. +   ..++|+.||+.+++
T Consensus       387 ~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          387 GQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             CCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             cCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            99998766643 2   34799999998765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.58  E-value=9.7e-13  Score=134.09  Aligned_cols=203  Identities=10%  Similarity=0.027  Sum_probs=136.2

Q ss_pred             cCeEEEEEcCCC-eEEEEeCC---C--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC------------
Q 006424          288 GDVLDLAWSNSN-YLLSCSMD---K--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID------------  349 (645)
Q Consensus       288 ~~V~~l~~s~~~-~l~s~s~d---g--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d------------  349 (645)
                      ..+..++|+|+| .|+.++.+   +  .|.+||+.+++......+.. +..++|+| +++.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence            467889999998 67766543   2  48888998888777666555 99999999 89888887642            


Q ss_pred             ---------------CcEEEEeCCCCcE-EEeeccCCCeEEEEEccCCCEEEEEecCC-------eEEEEEecCCceeee
Q 006424          350 ---------------GKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITG-------TCHFYKASGNDLKLE  406 (645)
Q Consensus       350 ---------------g~i~vwd~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~~g~~dg-------~i~iwd~~~~~~~~~  406 (645)
                                     ..|++||+.+++. ..+.. . .+..+.|+|+| .++++..++       ...+|.+.+...  .
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~  211 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--E  211 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE--E
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce--E
Confidence                           5699999998887 44444 4 78899999999 777776542       445555543322  1


Q ss_pred             EEeeccccccCCCCeEEEEEcCCCCcEEEEEECC--------CeEEEEECCcceeeEeecCCCCCeEE-EEEecCCCEEE
Q 006424          407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--------SKLRILDGVDVIHKFKGLPKSGSQMS-ASFTTTGKHII  477 (645)
Q Consensus       407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d--------g~I~iwd~~~~~~~~~~~~~~~~i~~-v~~sp~~~~l~  477 (645)
                      .+...       ..+..+  +|+| +.|+.++.+        ..|.+|| ......+ ...+...+.. +.|+ ++ +++
T Consensus       212 ~l~~~-------~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l-~~~~~~~~~~~~~~s-dg-~~~  277 (347)
T 2gop_A          212 KMFEK-------VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD-GKEVMGI-LDEVDRGVGQAKIKD-GK-VYF  277 (347)
T ss_dssp             EEEEE-------ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC-SSCEEES-STTCCSEEEEEEEET-TE-EEE
T ss_pred             EeccC-------cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC-CCceEec-cccCCcccCCccEEc-Cc-EEE
Confidence            11111       233443  8998 566655543        4788888 3222211 2234566776 8999 88 999


Q ss_pred             EEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCC
Q 006424          478 SIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG  523 (645)
Q Consensus       478 t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~  523 (645)
                      +++.++.++|| ++++..          .. ....++.+..++|+|
T Consensus       278 ~~~~~~~~~l~-~~~g~~----------~~-~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          278 TLFEEGSVNLY-IWDGEI----------KP-IAKGRHWIMGFDVDE  311 (347)
T ss_dssp             EEEETTEEEEE-EESSSE----------EE-EECSSSEEEEEEESS
T ss_pred             EEecCCcEEEE-EcCCce----------EE-EecCCCeEEeeeeeC
Confidence            99999999999 874311          01 122356677788888

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.58  E-value=4.6e-13  Score=131.21  Aligned_cols=238  Identities=11%  Similarity=0.036  Sum_probs=167.8

Q ss_pred             cEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          202 CIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       202 ~V~~l~fspdg~~L~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      ...+++++++|++++ +.+.++.|.+|+..+...                                             .
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~---------------------------------------------~   59 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT---------------------------------------------T   59 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC--------------------------------------------------E
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCccc---------------------------------------------c
Confidence            678999999999777 547788999998654210                                             0


Q ss_pred             eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424          281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  359 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  359 (645)
                      .....+...+.++++++++.++.+..++.|.+||.......... .....+.+++++| +++++++...++.|.+|+..+
T Consensus        60 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~  138 (270)
T 1rwi_B           60 VLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGS  138 (270)
T ss_dssp             ECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTC
T ss_pred             eEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCC
Confidence            00012334577899998875555555889999998765443222 2335789999999 888777777788999998766


Q ss_pred             CcEEEe-eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424          360 KRVVDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  438 (645)
Q Consensus       360 ~~~~~~-~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s  438 (645)
                      ...... ......+.+++++++|+.+++...++.|.+||..+......  ...     ....+.+++++++| .++++..
T Consensus       139 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~-----~~~~p~~i~~d~~g-~l~v~~~  210 (270)
T 1rwi_B          139 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--PFT-----DITAPWGIAVDEAG-TVYVTEH  210 (270)
T ss_dssp             CSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--CCS-----SCCSEEEEEECTTC-CEEEEET
T ss_pred             ceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee--ccc-----CCCCceEEEECCCC-CEEEEEC
Confidence            544332 22334678999999998776666788999999876543221  011     12568899999998 6777777


Q ss_pred             CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          439 EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       439 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .++.|.+||............+...+.+++++++|+++++...+++|+++++...
T Consensus       211 ~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          211 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            7899999997643333222223357899999999998888889999999998765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.55  E-value=2.9e-12  Score=138.43  Aligned_cols=323  Identities=13%  Similarity=0.051  Sum_probs=198.2

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccC
Q 006424          210 PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGD  289 (645)
Q Consensus       210 pdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  289 (645)
                      |.+.++++...+++|.++|..++                                             +.+..+. ....
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~---------------------------------------------~v~~~i~-~g~~  198 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTY---------------------------------------------EIKTVLD-TGYA  198 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTC---------------------------------------------CEEEEEE-CSSC
T ss_pred             CCceEEEEeCCCCeEEEEECCCC---------------------------------------------eEEEEEe-CCCC
Confidence            44557778888999999999873                                             3333443 2234


Q ss_pred             eEEEEEcCCC-eEEEEeCCCcEEEEecC--CCeEEEEecCCCcEEEEEEe----eCCCCEEEEEeC-CCcEEEEeCCCCc
Q 006424          290 VLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFN----PIDDNYFISGSI-DGKVRIWGVCEKR  361 (645)
Q Consensus       290 V~~l~~s~~~-~l~s~s~dg~I~iwd~~--~~~~~~~~~~~~~v~~l~~~----p~~~~~l~s~s~-dg~i~vwd~~~~~  361 (645)
                      +..+.|+|++ ++++++.|+.|.+||+.  +++.+..+........++|+    | +++++++++. +++|.++|..+.+
T Consensus       199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCC
T ss_pred             ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCc
Confidence            6689999998 78889999999999995  88888888766678899999    7 8888777665 5899999999888


Q ss_pred             EEEeecc------------CCCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          362 VVDWADV------------RDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       362 ~~~~~~~------------~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      .+.....            ...+..+..++++..+++. ..+|.|.++|......... .....     .....++.|+|
T Consensus       278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v-~~i~~-----~~~~~d~~~~p  351 (567)
T 1qks_A          278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT-TEISA-----ERFLHDGGLDG  351 (567)
T ss_dssp             EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE-EEEEC-----CSSEEEEEECT
T ss_pred             EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee-eeeec-----cccccCceECC
Confidence            7654321            1257788889887655544 5569999999876542211 11111     24567889999


Q ss_pred             CCCcEEEEEECCCeEEEEECCcceee--Eee---cCCCCCeEEEEEecCCCEE-EEEe-CCccEEEEeCCCCCcCCCccc
Q 006424          429 DESQRIMITSEDSKLRILDGVDVIHK--FKG---LPKSGSQMSASFTTTGKHI-ISIG-DDCRVYVWNYDELCFPSSKQK  501 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~~~~~~--~~~---~~~~~~i~~v~~sp~~~~l-~t~s-~dg~I~iwd~~~~~~~~~~~~  501 (645)
                      +|..++++...++.|.++|..+....  ...   ..|.+....+ ++|++..+ +++. .++.|.++|.++......  .
T Consensus       352 dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~--~  428 (567)
T 1qks_A          352 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN--A  428 (567)
T ss_dssp             TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT--B
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc--c
Confidence            98544455556899999998754322  221   1233222222 58875544 4443 468999999987421100  0


Q ss_pred             CCcceeeeeecCCcEEEEecCCCCccccccCCCC----ccccCcccccccc-----C---C--------ccCCCCccccC
Q 006424          502 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS----LRDCSQKWDNLET-----A---P--------WIRDSERFSLG  561 (645)
Q Consensus       502 ~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~----~~~~~~~w~~~~~-----~---~--------~~~~~~~~~~~  561 (645)
                      -.....+.... +..+.+..+|++..||......    ....+.+.+....     .   .        .+......+..
T Consensus       429 ~kvv~~i~~~g-~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  507 (567)
T 1qks_A          429 WKILDSFPALG-GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQ  507 (567)
T ss_dssp             TSEEEEEECSC-SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEE
T ss_pred             CEEEEEEecCC-CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEe
Confidence            00111111111 1112344555555555322110    0111222222111     0   0        01123456788


Q ss_pred             ccccCCCCCCcCCCC----CCCcCCCCCCccC
Q 006424          562 SWFSNDGPCRGSATW----PAEKLPLWDVTID  589 (645)
Q Consensus       562 ~~fs~dg~~l~s~s~----~d~~i~iWd~~~~  589 (645)
                      ..|++||+.+-.+.|    .++.|.|+|..++
T Consensus       508 ~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~  539 (567)
T 1qks_A          508 GEFNKDGTEVWFSVWNGKDQESALVVVDDKTL  539 (567)
T ss_dssp             EEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             eeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence            899999996655544    2578888888877

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.55  E-value=1.6e-13  Score=142.41  Aligned_cols=249  Identities=12%  Similarity=0.069  Sum_probs=155.5

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCc-eEEecccCCCcceeecCCCceeccCCCceee
Q 006424          205 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG-KIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  283 (645)
Q Consensus       205 ~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  283 (645)
                      .+.|+|||++|+.++.++.|++||+.++........+...    ...+ .+.+...                  .....+
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~----~~~g~~l~~~~~------------------~~~~~~  142 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW----KGYGTWVANSDC------------------TKLVGI  142 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE----EEEEEEEECTTS------------------SEEEEE
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc----CCCCCEEEeccC------------------Cccccc
Confidence            4789999999999999999999999876543322211110    0000 0000000                  000000


Q ss_pred             ccCccCeEEEEEcCCC-eEEEE-----eCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC------Cc
Q 006424          284 HGHKGDVLDLAWSNSN-YLLSC-----SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID------GK  351 (645)
Q Consensus       284 ~~h~~~V~~l~~s~~~-~l~s~-----s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d------g~  351 (645)
                           ....+.|+|++ .++.+     ..+..|.+||+.+++......+...+..+.|+|.++..|+.++.+      ..
T Consensus       143 -----~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~  217 (396)
T 3c5m_A          143 -----EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDAR  217 (396)
T ss_dssp             -----EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCC
T ss_pred             -----cccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCce
Confidence                 00113467776 44332     466789999999988777777777899999998446656665543      36


Q ss_pred             EEEEeCCCCcEEEeecc--CCCeEEEEEccCCCEEEEEecC-----CeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424          352 VRIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       352 i~vwd~~~~~~~~~~~~--~~~v~~l~~sp~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                      |.+||+.++....+..+  ...+..+.|+|+|+.|+.++.+     +.|++||+.+...... ....        ... +
T Consensus       218 l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~--------~~~-~  287 (396)
T 3c5m_A          218 MWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV-MVMP--------PCS-H  287 (396)
T ss_dssp             CEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE-EECC--------SEE-E
T ss_pred             EEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe-eeCC--------CCC-C
Confidence            89999987766655443  2357889999999988777544     4499999987654221 1111        123 8


Q ss_pred             EEcC-CCCcEEEEEE----------------CCCeEEEEECCcc-eeeEeecCCCC-----------CeEEEEEecCCCE
Q 006424          425 QFSR-DESQRIMITS----------------EDSKLRILDGVDV-IHKFKGLPKSG-----------SQMSASFTTTGKH  475 (645)
Q Consensus       425 ~~s~-~g~~~l~~~s----------------~dg~I~iwd~~~~-~~~~~~~~~~~-----------~i~~v~~sp~~~~  475 (645)
                      .|+| +| .++++++                .+..|++||.... ...+..  +..           .+..++|+|+|+.
T Consensus       288 ~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~  364 (396)
T 3c5m_A          288 LMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCK--HSTSWDVLDGDRQITHPHPSFTPNDDG  364 (396)
T ss_dssp             EEECSSS-SEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEE--CCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred             CccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccC--CCCccccccccccCCCCCceEccCCCe
Confidence            8999 98 5676654                3478999997643 223333  222           2566789999999


Q ss_pred             EEEEeC-CccEEEE--eCCCC
Q 006424          476 IISIGD-DCRVYVW--NYDEL  493 (645)
Q Consensus       476 l~t~s~-dg~I~iw--d~~~~  493 (645)
                      |+.++. ++...+|  ++.++
T Consensus       365 l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          365 VLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             EEEEECTTSSCEEEEEECCTT
T ss_pred             EEEEecCCCCceEEEEEEccc
Confidence            887765 4554444  55554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.55  E-value=2.2e-12  Score=130.50  Aligned_cols=235  Identities=6%  Similarity=-0.017  Sum_probs=164.9

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      .....+.+. ++++.++...++.|.+||..++                                             +.+
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~---------------------------------------------~~~   77 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF---------------------------------------------KEV   77 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC---------------------------------------------CEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECccc---------------------------------------------EEE
Confidence            346777774 4556666677899999999873                                             333


Q ss_pred             eeeccCccCeEEEEEcCCCeEEEEe-CCCcEEEEecCCCeEEEEecCCC------cEEEEEEeeCCCCEEEEEe-CCCcE
Q 006424          281 QELHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVFDHHN------YVTCVQFNPIDDNYFISGS-IDGKV  352 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~------~v~~l~~~p~~~~~l~s~s-~dg~i  352 (645)
                      ..+. .......+++++++.++.+. .++.|.+||..+++....+....      ....+++ . ++.++++.. .++.|
T Consensus        78 ~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v  154 (328)
T 3dsm_A           78 GRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRI  154 (328)
T ss_dssp             EEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEE
T ss_pred             EEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEE
Confidence            4443 34567889998888666655 89999999999999887775443      5667777 3 555555443 48899


Q ss_pred             EEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC----------CeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424          353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT----------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      .++|+.+++.............+.++|+|++++++..+          +.|.++|..+.+.. ..+....     +....
T Consensus       155 ~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~-~~~~~~~-----g~~p~  228 (328)
T 3dsm_A          155 LKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE-KQFKFKL-----GDWPS  228 (328)
T ss_dssp             EEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE-EEEECCT-----TCCCE
T ss_pred             EEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE-EEEecCC-----CCCce
Confidence            99999998877765556667889999999876666544          78999999876643 2232221     24678


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEECCcceee-Ee-ecCCCCCeEEEEEec-CCCEEEEE----eCCccEEEEeCCCCC
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FK-GLPKSGSQMSASFTT-TGKHIISI----GDDCRVYVWNYDELC  494 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~-~~-~~~~~~~i~~v~~sp-~~~~l~t~----s~dg~I~iwd~~~~~  494 (645)
                      .++++|++ ..++++..  .|.+||....... .. .........+++++| ++.+.++.    ..++.|.+||.+ ++
T Consensus       229 ~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          229 EVQLNGTR-DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             EEEECTTS-CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             eEEEecCC-CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence            99999987 56666554  8999997643221 11 111145788999999 55566665    578999999987 53

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.54  E-value=2.3e-13  Score=152.68  Aligned_cols=242  Identities=12%  Similarity=0.059  Sum_probs=163.9

Q ss_pred             cccCcEEEEEECCCCCEEE-----EEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          198 AHKGCIWTLKFSPDGRYLA-----SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~-----sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      +|...+.+++|||||++||     .|+.+..|++||+.++....                                    
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------------------------------------  161 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------------------------------------  161 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------------------------------------
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------------------------------------
Confidence            5667899999999999998     44455789999998743210                                    


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCc-------------EEEEecCCCeE--EEEec---CCCcEEEE
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT-------------VRMWQVGCNQC--LNVFD---HHNYVTCV  333 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~-------------I~iwd~~~~~~--~~~~~---~~~~v~~l  333 (645)
                             ...+.+.  ....++|+|+| .|+.++.|..             |++|++.+++.  ...+.   +...+..+
T Consensus       162 -------~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~  232 (695)
T 2bkl_A          162 -------VDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS  232 (695)
T ss_dssp             -------SCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred             -------CcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence                   0011111  12578999998 7888888776             99999987762  22232   44678899


Q ss_pred             EEeeCCCCEEEEEeCCC----cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec----CCeEEEEEecCCcee-
Q 006424          334 QFNPIDDNYFISGSIDG----KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLK-  404 (645)
Q Consensus       334 ~~~p~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~----dg~i~iwd~~~~~~~-  404 (645)
                      .|+| ++++|+.++.++    .|++||..++....+..+...+....+ ++|. ++..+.    ++.|.+||+.+.... 
T Consensus       233 ~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~  309 (695)
T 2bkl_A          233 DLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS  309 (695)
T ss_dssp             EECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred             EECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence            9999 999888877666    688888777777777666666666666 6677 555443    578999998765421 


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cc-eeeEeecCCCCCeEEEEEecCCCEEEEEe-
Q 006424          405 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DV-IHKFKGLPKSGSQMSASFTTTGKHIISIG-  480 (645)
Q Consensus       405 ~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~-~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-  480 (645)
                      ...+..+.    ....+..++|+ ++ .++++...|+..++|...  .. ...+.. ...+.+..++++|+++.++... 
T Consensus       310 ~~~l~~~~----~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~s  382 (695)
T 2bkl_A          310 WKEIVPED----SSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKPVRTVQL-PGVGAASNLMGLEDLDDAYYVFT  382 (695)
T ss_dssp             CEEEECCC----SSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCEEEECCC-SSSSEECCCBSCTTCSEEEEEEE
T ss_pred             CeEEecCC----CCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCeeEEecC-CCCeEEEEeecCCCCCEEEEEEc
Confidence            11111111    12457788888 43 788899999988887543  21 222222 1255677788999998776332 


Q ss_pred             ---CCccEEEEeCCCCC
Q 006424          481 ---DDCRVYVWNYDELC  494 (645)
Q Consensus       481 ---~dg~I~iwd~~~~~  494 (645)
                         ..++|++||+.+++
T Consensus       383 s~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          383 SFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             ETTEEEEEEEEETTTCC
T ss_pred             CCCCCCEEEEEECCCCc
Confidence               35889999998875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.54  E-value=3.3e-11  Score=119.57  Aligned_cols=239  Identities=8%  Similarity=0.050  Sum_probs=169.5

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      +..+...+.+++++++|+++++...++.|.+||.. +....                                       
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~---------------------------------------   49 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE---------------------------------------   49 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE---------------------------------------
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE---------------------------------------
Confidence            44566789999999999988877778899999876 32110                                       


Q ss_pred             cCCCceeeccCccCeEEEEEcCCCeEE-EEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSNYLL-SCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                           .....+...+.++++++++.++ +...++.|..||.. ++. ..+.   ....+.++++.| +++++++...++.
T Consensus        50 -----~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~  121 (299)
T 2z2n_A           50 -----YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNR  121 (299)
T ss_dssp             -----EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTE
T ss_pred             -----ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCce
Confidence                 0111234678899999888544 44457889999986 433 2222   445789999998 8888887777889


Q ss_pred             EEEEeCCCCcEEEee--ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          352 VRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       352 i~vwd~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      |..||. +++.....  .....+..++++++|+..++...++.|..||. +.....  .....    ....+.++++.++
T Consensus       122 i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~~----~~~~~~~i~~~~~  193 (299)
T 2z2n_A          122 IGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE--FKIPT----PASGPVGITKGND  193 (299)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE--EECSS----TTCCEEEEEECTT
T ss_pred             EEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE--eeCCC----CCCcceeEEECCC
Confidence            999998 55554432  23457899999999987777667789999998 443321  11111    1356889999999


Q ss_pred             CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      | .++++...++.|.+||.......+........+.+++++++|++.++...++.|..||..
T Consensus       194 g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          194 D-ALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             S-SEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             C-CEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence            7 666666668899999984333333333345678999999999977776678899999983

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.54  E-value=1.1e-12  Score=133.74  Aligned_cols=222  Identities=11%  Similarity=0.122  Sum_probs=147.0

Q ss_pred             CcEEEEEECCCCCEEEEEeCC---Cc--EEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          201 GCIWTLKFSPDGRYLASGGED---GV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~D---g~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      ..+.+++|||||++|+.++.+   +.  |.+|++.++.                                          
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~------------------------------------------   96 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS------------------------------------------   96 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE------------------------------------------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc------------------------------------------
Confidence            458899999999999988754   33  6677776522                                          


Q ss_pred             cCCCceeeccCccCeEEEEEcCCC-eEEEEeC---------------------------CCcEEEEecCCCeEEEEecCC
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---------------------------DKTVRMWQVGCNQCLNVFDHH  327 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~---------------------------dg~I~iwd~~~~~~~~~~~~~  327 (645)
                          ...+..+.. +..++|+|++ .|+.++.                           ...|.+||+.+++.+..+...
T Consensus        97 ----~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~  171 (347)
T 2gop_A           97 ----SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP  171 (347)
T ss_dssp             ----EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE
T ss_pred             ----eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC
Confidence                122222233 8999999997 6776653                           257999999988873443323


Q ss_pred             CcEEEEEEeeCCCCEEEEEeCCC-------cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC--------Ce
Q 006424          328 NYVTCVQFNPIDDNYFISGSIDG-------KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT--------GT  392 (645)
Q Consensus       328 ~~v~~l~~~p~~~~~l~s~s~dg-------~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d--------g~  392 (645)
                       .+..+.|+| ++ +++++..++       ...+|.+.+++...+..+ ..+..+  +|+|+.|+.++.+        ..
T Consensus       172 -~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~  245 (347)
T 2gop_A          172 -RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNK  245 (347)
T ss_dssp             -TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCE
T ss_pred             -CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccce
Confidence             788999999 88 777776542       334443336666555554 455544  9999998887754        36


Q ss_pred             EEEEEecCCceeeeEEeeccccccCCCCeEE-EEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEec
Q 006424          393 CHFYKASGNDLKLEKVDFHDRKKTSGNKITG-IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT  471 (645)
Q Consensus       393 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp  471 (645)
                      |.+||  +....  .  +.   ..+...+.. +.|+ ++  ++++++.++.+++| +.... ......+...|.+++|+|
T Consensus       246 l~~~d--~~~~~--~--l~---~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~-~~~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          246 LYIYD--GKEVM--G--IL---DEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGE-IKPIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             EEEEC--SSCEE--E--SS---TTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSS-EEEEECSSSEEEEEEESS
T ss_pred             EEEEC--CCceE--e--cc---ccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCc-eEEEecCCCeEEeeeeeC
Confidence            77777  33221  1  11   112356775 8999 75  88889999999999 75321 122223467789999999


Q ss_pred             CCCEEEEEeCCccE-EEEeCC
Q 006424          472 TGKHIISIGDDCRV-YVWNYD  491 (645)
Q Consensus       472 ~~~~l~t~s~dg~I-~iwd~~  491 (645)
                        .++++++.++.. .+|.++
T Consensus       312 --~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          312 --IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             --SEEEEEECSSSCCEEEEES
T ss_pred             --cEEEEEcCCCChHHheEeC
Confidence              677777777665 777765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.53  E-value=3.4e-13  Score=150.50  Aligned_cols=204  Identities=9%  Similarity=-0.006  Sum_probs=135.2

Q ss_pred             CccCeEEEEEcCCC-eEEEEeCC----------CcEEEEecCC------CeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe
Q 006424          286 HKGDVLDLAWSNSN-YLLSCSMD----------KTVRMWQVGC------NQCLNVF-DHHNYVTCVQFNPIDDNYFISGS  347 (645)
Q Consensus       286 h~~~V~~l~~s~~~-~l~s~s~d----------g~I~iwd~~~------~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s  347 (645)
                      |...+.+++|+|+| .|++++.+          ..|++||+.+      ++..... .+...+..++|+| +++.|+.++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~  206 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLA  206 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEE
Confidence            66788999999998 78887776          5899999988      6665555 5667888899999 999998887


Q ss_pred             CCC--------cEEEEeCC-CC---cEEEeec-cCCCeEEEEEccCCCEEEEEecCC--eEEEEEecCCceeeeEEeecc
Q 006424          348 IDG--------KVRIWGVC-EK---RVVDWAD-VRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHD  412 (645)
Q Consensus       348 ~dg--------~i~vwd~~-~~---~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~  412 (645)
                      .++        .|++||+. ++   +...+.. +...+..+.|+|||++++++..+|  .|.+||+.+...... ...+.
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l-~~~~~  285 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL-CRREE  285 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES-SCCSS
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec-ccccc
Confidence            553        79999998 56   5555444 467899999999999888888888  555555544432211 11110


Q ss_pred             cccc--CCCCeEEEEEcCCCCcEEEEEECCCeEEEE--ECCcceeeEeecCCCCCeEEE-EEecCCCEEEEEeCCc--cE
Q 006424          413 RKKT--SGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVDVIHKFKGLPKSGSQMSA-SFTTTGKHIISIGDDC--RV  485 (645)
Q Consensus       413 ~~~~--~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw--d~~~~~~~~~~~~~~~~i~~v-~~sp~~~~l~t~s~dg--~I  485 (645)
                      ....  -...+..++|+|++ .++++++. +.++||  |..... ......+...+..+ +++.+.-++++++.+.  .|
T Consensus       286 ~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i  362 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEV  362 (662)
T ss_dssp             BSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred             cccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEE
Confidence            0000  00114578899987 78888888 999999  544222 12222345566666 4443333444455554  56


Q ss_pred             EEEeCCCCC
Q 006424          486 YVWNYDELC  494 (645)
Q Consensus       486 ~iwd~~~~~  494 (645)
                      ++||+.+++
T Consensus       363 ~~~d~~~g~  371 (662)
T 3azo_A          363 VELDTVTGR  371 (662)
T ss_dssp             EEEETTTCC
T ss_pred             EEEECCCCc
Confidence            666766664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.52  E-value=4.3e-12  Score=125.54  Aligned_cols=239  Identities=9%  Similarity=0.108  Sum_probs=160.4

Q ss_pred             cCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-------CCCcEEEEEEeeCCCCEEEEEeC-CCcEEEE
Q 006424          285 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNYFISGSI-DGKVRIW  355 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-------~~~~v~~l~~~p~~~~~l~s~s~-dg~i~vw  355 (645)
                      ++-..+.++++++++ .+++.+.++.|.+||.. ++.+..+.       +...+.++++.+.+++++++... ++.|++|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            456778999999987 56666788999999987 65665553       23468899995326666665533 7899999


Q ss_pred             eCCCCcEEEee--ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424          356 GVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  433 (645)
Q Consensus       356 d~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~  433 (645)
                      |. +++.....  .....+..++++|+|+.+++...++.|.+||.....  ...+...    .+...+.+++++++| .+
T Consensus       106 d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~--~~~~~~~----~~~~~p~~i~~~~~g-~l  177 (286)
T 1q7f_A          106 NQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV--LHKFGCS----KHLEFPNGVVVNDKQ-EI  177 (286)
T ss_dssp             CT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE--EEEEECT----TTCSSEEEEEECSSS-EE
T ss_pred             CC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE--EEEeCCC----CccCCcEEEEECCCC-CE
Confidence            94 45544432  234578999999999977777778999999965432  2222111    123468899999997 67


Q ss_pred             EEEEECCCeEEEEECCcc-eeeEeecCCCCCeEEEEEecCCCEEEEEeCCc-cEEEEeCCCCCcCCCcccCCcceeeeee
Q 006424          434 IMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC-RVYVWNYDELCFPSSKQKNSVRSCEHFF  511 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~  511 (645)
                      +++...++.|++||.... ...+....+...+.+++++++|+++++...++ .|.+||..... .        .......
T Consensus       178 ~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~-~--------~~~~~~~  248 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL-I--------SALESKV  248 (286)
T ss_dssp             EEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCE-E--------EEEEESS
T ss_pred             EEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCE-E--------EEEcccC
Confidence            777778999999997532 22332222235789999999999988888776 99999964321 1        0110101


Q ss_pred             cCCcEEEEecCCCCccccccCCCCccccCccccc
Q 006424          512 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN  545 (645)
Q Consensus       512 ~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~  545 (645)
                      ......+++++|+|..+++ +.+   ..+.+|+.
T Consensus       249 ~~~~~~~i~~~~~g~l~vs-~~~---~~v~v~~~  278 (286)
T 1q7f_A          249 KHAQCFDVALMDDGSVVLA-SKD---YRLYIYRY  278 (286)
T ss_dssp             CCSCEEEEEEETTTEEEEE-ETT---TEEEEEEC
T ss_pred             CCCcceeEEECCCCcEEEE-CCC---CeEEEEEc
Confidence            1223568888898875554 333   34555654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.52  E-value=1.3e-11  Score=123.68  Aligned_cols=246  Identities=12%  Similarity=0.144  Sum_probs=167.7

Q ss_pred             ccCcEEEEEECCCCCEEEE-------EeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          199 HKGCIWTLKFSPDGRYLAS-------GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~s-------gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      .-....+++|+++|+++++       +..++.|.+||..++......                                 
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~---------------------------------   62 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC---------------------------------   62 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE---------------------------------
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE---------------------------------
Confidence            3445789999999988888       577889999997664321000                                 


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCC-CeEEEEeCCCcEEEEecCCCeEEEE-ec-----CCCcEEEEEEeeCCCCEEE
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNV-FD-----HHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~~~~~~~~-~~-----~~~~v~~l~~~p~~~~~l~  344 (645)
                              .....++...+.+++++++ +.++.++..+.|.+||.. ++.... ..     ....+.++++++ ++++++
T Consensus        63 --------~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v  132 (314)
T 1pjx_A           63 --------KPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWI  132 (314)
T ss_dssp             --------CCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEE
T ss_pred             --------ecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEE
Confidence                    0001224567889999998 877767666689999998 766544 32     123588999999 888877


Q ss_pred             EEeCC---------------CcEEEEeCCCCcEEEeeccCCCeEEEEEc----cCCCEEEEE-ecCCeEEEEEec-CCce
Q 006424          345 SGSID---------------GKVRIWGVCEKRVVDWADVRDVISAICYI----PDGKGFIVG-SITGTCHFYKAS-GNDL  403 (645)
Q Consensus       345 s~s~d---------------g~i~vwd~~~~~~~~~~~~~~~v~~l~~s----p~g~~l~~g-~~dg~i~iwd~~-~~~~  403 (645)
                      +...+               +.|..||.. ++.............++++    |+++.++++ ..++.|.+||.. ....
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~  211 (314)
T 1pjx_A          133 TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI  211 (314)
T ss_dssp             EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE
T ss_pred             EecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc
Confidence            76654               568888876 6555554444567889999    999776665 467899999986 3322


Q ss_pred             eeeEEeeccccccCC-CCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEecCCCEEE-EE
Q 006424          404 KLEKVDFHDRKKTSG-NKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHII-SI  479 (645)
Q Consensus       404 ~~~~~~~~~~~~~~~-~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp~~~~l~-t~  479 (645)
                      ..... +.. ...+. ..+..++++++| .++++...++.|.+||..+  ....+..  +...+.+++|+|+++.|+ +.
T Consensus       212 ~~~~~-~~~-~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          212 ENKKV-WGH-IPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             EEEEE-EEE-CCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEE
T ss_pred             ccceE-EEE-CCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEe
Confidence            11111 111 11111 457889999998 7777777889999999762  2333333  446789999999999555 44


Q ss_pred             eCCccEEEEeCCCC
Q 006424          480 GDDCRVYVWNYDEL  493 (645)
Q Consensus       480 s~dg~I~iwd~~~~  493 (645)
                      ..++.|..|++...
T Consensus       287 ~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          287 HENNAVWKFEWQRN  300 (314)
T ss_dssp             TTTTEEEEEECSSC
T ss_pred             CCCCeEEEEeCCCC
Confidence            55689999998753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.50  E-value=8.1e-12  Score=126.40  Aligned_cols=232  Identities=11%  Similarity=0.075  Sum_probs=156.7

Q ss_pred             ccCeEEEEEcCCC-eEEEEeCC------------------------CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCC
Q 006424          287 KGDVLDLAWSNSN-YLLSCSMD------------------------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID  339 (645)
Q Consensus       287 ~~~V~~l~~s~~~-~l~s~s~d------------------------g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~  339 (645)
                      -+.+.+++++++| .+++.+.+                        +.|.+||..+++.+..+.  +-..+..++++| +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence            4679999999998 45555555                        379999999999887775  335789999999 8


Q ss_pred             CCEEEEEeCCCcEEEEeCCCC--cEEEe---------eccCCCeEEEEEcc-CCCEEEEEe-cCCeEEEEEecCCceeee
Q 006424          340 DNYFISGSIDGKVRIWGVCEK--RVVDW---------ADVRDVISAICYIP-DGKGFIVGS-ITGTCHFYKASGNDLKLE  406 (645)
Q Consensus       340 ~~~l~s~s~dg~i~vwd~~~~--~~~~~---------~~~~~~v~~l~~sp-~g~~l~~g~-~dg~i~iwd~~~~~~~~~  406 (645)
                      ++++++...++.|++||....  .+..+         ..+-.....++++| ++.++++.+ .++.|++|+.... .. .
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~-~~-~  179 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK-FV-T  179 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC-EE-E
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC-EE-E
Confidence            998888888899999998765  33333         23334688999999 787777775 6899999995433 22 2


Q ss_pred             EEeecccc----ccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cceeeEeecCCCCCeEEEEEecCCCEEEEE-
Q 006424          407 KVDFHDRK----KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI-  479 (645)
Q Consensus       407 ~~~~~~~~----~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~-  479 (645)
                      .+...+..    ..+-.....++++|++..++++...++.|++||..  +....+....+...+.+++|+| +..+++. 
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g  258 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG  258 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence            22111110    11123478999999843788888889999999976  3344444444567788999999 4333333 


Q ss_pred             ------eCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcccc
Q 006424          480 ------GDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK  529 (645)
Q Consensus       480 ------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~  529 (645)
                            ..+..|++||+.+++........       -........++++|+|..++
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-------~~~~~~p~~ia~~~dG~lyv  307 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPV-------RKHFDMPHDIVASEDGTVYI  307 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCS-------SSCCSSEEEEEECTTSEEEE
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCC-------CCccCCeeEEEECCCCCEEE
Confidence                  34558999999877432211000       01122356788888884333

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.50  E-value=1.3e-11  Score=138.84  Aligned_cols=201  Identities=9%  Similarity=0.031  Sum_probs=136.6

Q ss_pred             cCccCeEEEEEcCCC-eEEEEeCC-C----cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc-------
Q 006424          285 GHKGDVLDLAWSNSN-YLLSCSMD-K----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-------  351 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~-~l~s~s~d-g----~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~-------  351 (645)
                      +|...+..++||||| +|+.++.+ |    .|++||+.+++.+........+..++|+| |++.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEe-CCCEEEEEEECCcccccccc
Confidence            355578899999998 66655443 3    89999999998876433223367899999 9999999888766       


Q ss_pred             ---------EEEEeCCCCc---EEEee--ccCCCeEEEEEccCCCEEEEEec-----CCeEEEEEecC------Cceeee
Q 006424          352 ---------VRIWGVCEKR---VVDWA--DVRDVISAICYIPDGKGFIVGSI-----TGTCHFYKASG------NDLKLE  406 (645)
Q Consensus       352 ---------i~vwd~~~~~---~~~~~--~~~~~v~~l~~sp~g~~l~~g~~-----dg~i~iwd~~~------~~~~~~  406 (645)
                               |++|++.++.   .....  .+...+..+.|+|||++|+.++.     +..|.+||+.+      ......
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     9999998765   22222  24556789999999999988765     56899999976      322222


Q ss_pred             EEeeccccccCCCCeEEEEEcCCCCcEEEEEECC---CeEEEEECCcce----eeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424          407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISI  479 (645)
Q Consensus       407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d---g~I~iwd~~~~~----~~~~~~~~~~~i~~v~~sp~~~~l~t~  479 (645)
                      .+..+.      ..+.. .|+|+|..+++.+..+   +.|.+||+....    ..+..+.....+..++|++++.++++.
T Consensus       281 ~l~~~~------~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~  353 (710)
T 2xdw_A          281 KLIDNF------EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY  353 (710)
T ss_dssp             EEECSS------SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred             EeeCCC------CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence            222211      23333 4888874444444433   379999987532    333332222367889999888888888


Q ss_pred             eCCcc--EEEEeCCCC
Q 006424          480 GDDCR--VYVWNYDEL  493 (645)
Q Consensus       480 s~dg~--I~iwd~~~~  493 (645)
                      ..|+.  |++|++.++
T Consensus       354 ~~~g~~~l~~~~~~~g  369 (710)
T 2xdw_A          354 LHDVKNTLQLHDLATG  369 (710)
T ss_dssp             EETTEEEEEEEETTTC
T ss_pred             EECCEEEEEEEECCCC
Confidence            88884  566676554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.46  E-value=1.7e-11  Score=120.40  Aligned_cols=212  Identities=11%  Similarity=-0.037  Sum_probs=153.7

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCc-cC
Q 006424          211 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHK-GD  289 (645)
Q Consensus       211 dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~  289 (645)
                      .+++|++++.|+.|.+||.+++                                             +.+..+..+. ..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG---------------------------------------------~~~w~~~~~~~~~   38 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK---------------------------------------------EIVWEYPLEKGWE   38 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT---------------------------------------------EEEEEEECCTTCC
T ss_pred             CCcEEEeeCCCCEEEEEECCCC---------------------------------------------eEEEEeCCCccCC
Confidence            4679999999999999998773                                             3345555554 46


Q ss_pred             eEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecC--CCcEEEEEEeeCCCCEEEEEeC-CCcEEEEeCCCCcEEEee
Q 006424          290 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH--HNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVVDWA  366 (645)
Q Consensus       290 V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~  366 (645)
                      +.++.++|+|.++. +.++.|..||. +++.+..+..  ...+.++.+.| +++++++.+. ++.|..+|.....+..+.
T Consensus        39 ~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~  115 (276)
T 3no2_A           39 CNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNMKGEVLSKTE  115 (276)
T ss_dssp             CCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTTSCEEEEEE
T ss_pred             CcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeCCCCEEEEEe
Confidence            88899999984444 56788999999 7988888864  35788999999 9999999887 778888887443333322


Q ss_pred             ------ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424          367 ------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  440 (645)
Q Consensus       367 ------~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d  440 (645)
                            .+......+.+.++|+++++...++.|..||.. ++.. ..+...       ....++...++| ..+++++.+
T Consensus       116 ~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~-w~~~~~-------~~~~~~~~~~~g-~~~v~~~~~  185 (276)
T 3no2_A          116 FETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL-NSVKLS-------GTPFSSAFLDNG-DCLVACGDA  185 (276)
T ss_dssp             ECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE-EEEECS-------SCCCEEEECTTS-CEEEECBTT
T ss_pred             ccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE-EEEECC-------CCccceeEcCCC-CEEEEeCCC
Confidence                  111245566788999999999999999999988 5442 222222       345567788887 788888888


Q ss_pred             CeEEEEECCcceeeEeecCC------CCCeEEEEEecCCCEEEEEe
Q 006424          441 SKLRILDGVDVIHKFKGLPK------SGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       441 g~I~iwd~~~~~~~~~~~~~------~~~i~~v~~sp~~~~l~t~s  480 (645)
                      +.|..+|..+..........      ...+.++...++|..+++..
T Consensus       186 ~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          186 HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            89999997744333332111      22377888889999888874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.45  E-value=5.1e-12  Score=141.67  Aligned_cols=195  Identities=12%  Similarity=0.055  Sum_probs=130.9

Q ss_pred             cCccCeEEEEEcCCC-eEE-----EEeCCCcEEEEecCCCeEE-EEecCCCcEEEEEEeeCCCCEEEEEeCCCc------
Q 006424          285 GHKGDVLDLAWSNSN-YLL-----SCSMDKTVRMWQVGCNQCL-NVFDHHNYVTCVQFNPIDDNYFISGSIDGK------  351 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~-~l~-----s~s~dg~I~iwd~~~~~~~-~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~------  351 (645)
                      +|...+..++||||| +|+     .|+.+.+|++||+.+++.+ ...-.......++|+| +++.|+.++.|..      
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence            466679999999998 555     2333468999999998865 2111111126789999 9999999988776      


Q ss_pred             -------EEEEeCCCCc----EEE-eeccCCCeEEEEEccCCCEEEEEecCC----eEEEEEecCCceeeeEEeeccccc
Q 006424          352 -------VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKK  415 (645)
Q Consensus       352 -------i~vwd~~~~~----~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~  415 (645)
                             |++|++.++.    ++. ...+...+.++.|+|||++|+.++.++    .|.+++..+...  ..+....   
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~---  271 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF--RLLVKGV---  271 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC--EEEEECS---
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce--EEeecCC---
Confidence                   9999998765    222 223446788999999999998877665    556665433322  2222221   


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEE---CCCeEEEEECCcce----eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEE
Q 006424          416 TSGNKITGIQFSRDESQRIMITS---EDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW  488 (645)
Q Consensus       416 ~~~~~i~~i~~s~~g~~~l~~~s---~dg~I~iwd~~~~~----~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iw  488 (645)
                         ..+....+ ++| .+++.+.   .++.|.+||+....    ..+........+..++|+ ++.++++...|+..+||
T Consensus       272 ---~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~  345 (695)
T 2bkl_A          272 ---GAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR  345 (695)
T ss_dssp             ---SCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             ---CceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence               34455556 676 4555544   25899999986432    333332224567888998 77888899999988888


Q ss_pred             eCC
Q 006424          489 NYD  491 (645)
Q Consensus       489 d~~  491 (645)
                      .++
T Consensus       346 ~~~  348 (695)
T 2bkl_A          346 VAT  348 (695)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.44  E-value=1.8e-11  Score=121.74  Aligned_cols=230  Identities=11%  Similarity=-0.008  Sum_probs=157.5

Q ss_pred             CCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      ..+..+..+.....+++|+|++  .++++..++.|..||..++  ...+ .+...+.+++++| +++++++...++.|.+
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLER   94 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEE
Confidence            4455666667778899999986  4778888999999999887  4444 4666799999999 8888877776789999


Q ss_pred             EeCCCCcEEEeecc-----CCCeEEEEEccCCCEEEEE----ec-------------CCeEEEEEecCCceeeeEEeecc
Q 006424          355 WGVCEKRVVDWADV-----RDVISAICYIPDGKGFIVG----SI-------------TGTCHFYKASGNDLKLEKVDFHD  412 (645)
Q Consensus       355 wd~~~~~~~~~~~~-----~~~v~~l~~sp~g~~l~~g----~~-------------dg~i~iwd~~~~~~~~~~~~~~~  412 (645)
                      ||..+++...+...     ...+..++++|+|+++++.    +.             .+.|..++.. ...  .... . 
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~--~~~~-~-  169 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL--SAPI-R-  169 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE--EEEE-C-
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE--EEee-c-
Confidence            99988776554321     2346789999999988763    21             2345555443 221  1111 1 


Q ss_pred             ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC-cc-----eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEE
Q 006424          413 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DV-----IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY  486 (645)
Q Consensus       413 ~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~-----~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~  486 (645)
                          .......++|+|+| ..+++.+.++.|++|+.. ..     ...+  ..+...+.+++++++|+++++.  ++.|.
T Consensus       170 ----~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~  240 (296)
T 3e5z_A          170 ----DRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVH  240 (296)
T ss_dssp             ----CCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred             ----CCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEE
Confidence                12457899999998 566777788999999975 21     1222  2245567789999999977766  88999


Q ss_pred             EEeCCCCCcCCCcccCCcceeeeeecCCcEEEEec-CCCCccccccCCCCc
Q 006424          487 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW-PGIGTEQKSLCSSSL  536 (645)
Q Consensus       487 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~-s~~~~~l~~~~~~~~  536 (645)
                      +||.+.. ...         . .-.+.+ +..++| .|++..|+..+.+.+
T Consensus       241 ~~~~~g~-~~~---------~-~~~~~~-~~~~~f~~~d~~~L~v~t~~~l  279 (296)
T 3e5z_A          241 VLTPDGD-ELG---------R-VLTPQT-TSNLCFGGPEGRTLYMTVSTEF  279 (296)
T ss_dssp             EECTTSC-EEE---------E-EECSSC-CCEEEEESTTSCEEEEEETTEE
T ss_pred             EECCCCC-EEE---------E-EECCCC-ceeEEEECCCCCEEEEEcCCeE
Confidence            9997632 110         0 011233 556677 578888887666543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.43  E-value=6.5e-11  Score=119.60  Aligned_cols=222  Identities=9%  Similarity=0.045  Sum_probs=152.0

Q ss_pred             cCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec
Q 006424          288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD  367 (645)
Q Consensus       288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  367 (645)
                      .....+.+..+..+++...++.|.+||..+++.+..+........+++++ ++.++++...++.|.+||..++++.....
T Consensus        44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            34566777654456666678999999999999988887667889999988 77544444478999999999988775444


Q ss_pred             cCC------CeEEEEEccCCCEEEEEe--cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424          368 VRD------VISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  439 (645)
Q Consensus       368 ~~~------~v~~l~~sp~g~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~  439 (645)
                      ...      ....+++  ++..++++.  .++.|.++|+.+..... .+...       .....+.++|+| ++++++..
T Consensus       123 ~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~-~i~~g-------~~p~~i~~~~dG-~l~v~~~~  191 (328)
T 3dsm_A          123 CPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVD-ELTIG-------IQPTSLVMDKYN-KMWTITDG  191 (328)
T ss_dssp             CTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEE-EEECS-------SCBCCCEECTTS-EEEEEBCC
T ss_pred             cCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEE-EEEcC-------CCccceEEcCCC-CEEEEECC
Confidence            333      5667777  345555555  48899999998876432 22221       335678899998 56666554


Q ss_pred             C----------CeEEEEECCccee--eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCccee
Q 006424          440 D----------SKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC  507 (645)
Q Consensus       440 d----------g~I~iwd~~~~~~--~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  507 (645)
                      +          +.|.++|..+...  .+... .......++|+|++++|+++..  .|++||..+++........     
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~-----  263 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLE-----  263 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBC-----
T ss_pred             CccCCccccCCceEEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeec-----
Confidence            4          7899999874432  22221 2346899999999999988755  8999999877542111000     


Q ss_pred             eeeecCCcEEEEecCCCCccccccC
Q 006424          508 EHFFSEGVSVAVQWPGIGTEQKSLC  532 (645)
Q Consensus       508 ~~~~~~g~~~~v~~s~~~~~l~~~~  532 (645)
                        . .......++++|++..|+...
T Consensus       264 --~-~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          264 --F-RDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             --C-CSSCEEEEEECTTTCCEEEEE
T ss_pred             --C-CCCceEEEEEcCCCCeEEEEc
Confidence              0 023456788888666666543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.42  E-value=2.9e-10  Score=112.72  Aligned_cols=237  Identities=8%  Similarity=0.036  Sum_probs=163.9

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      +...+.+++++++|.++++...++.|..||... ...                                           
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~-------------------------------------------   90 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIK-------------------------------------------   90 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE-------------------------------------------
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEE-------------------------------------------
Confidence            346799999999999888877788899998652 110                                           


Q ss_pred             CceeeccCccCeEEEEEcCCCeE-EEEeCCCcEEEEecCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          279 PLQELHGHKGDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~~l-~s~s~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                       ...+......+.++++.+++.+ ++...++.|..||. +++.....  .....+.++++.+ +++++++...++.|..|
T Consensus        91 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~  167 (299)
T 2z2n_A           91 -EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRI  167 (299)
T ss_dssp             -EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred             -EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEE
Confidence             0011123456888999988844 44556789999998 55544322  2345789999998 88887777667899999


Q ss_pred             eCCCCcEEEe--eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424          356 GVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  433 (645)
Q Consensus       356 d~~~~~~~~~--~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~  433 (645)
                      |. +++...+  ......+.+++++++|+..++...++.|..||. +....  .+...    .....+.+++++++| .+
T Consensus       168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~--~~~~~----~~~~~~~~i~~~~~g-~l  238 (299)
T 2z2n_A          168 TE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT--EFKIP----TPNARPHAITAGAGI-DL  238 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE--EEECS----STTCCEEEEEECSTT-CE
T ss_pred             cC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE--EEECC----CCCCCceeEEECCCC-CE
Confidence            99 6665543  233456889999999987666666889999998 44432  12121    123578899999997 56


Q ss_pred             EEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          434 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +++...++.|..||.......+....+...+.++++ +++.+.++.+ .+.|..++.++.
T Consensus       239 ~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          239 WFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             EEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            666557899999997543344433334567899999 8888777665 566777776654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.42  E-value=3.4e-11  Score=118.19  Aligned_cols=195  Identities=13%  Similarity=0.103  Sum_probs=143.1

Q ss_pred             cCCCeEEEEeCCCcEEEEecCCCeEEEEecCC--CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eecc-CCC
Q 006424          296 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADV-RDV  371 (645)
Q Consensus       296 s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~-~~~  371 (645)
                      +|++.|++++.|+.|.+||.++|+.+..+...  ..+.++.+.| ++++++  +.++.|+.||. +++.+. +... ...
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~   78 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE   78 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence            46678999999999999999999999988743  3688999999 999888  35788999999 666554 3332 347


Q ss_pred             eEEEEEccCCCEEEEEec-CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424          372 ISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  450 (645)
Q Consensus       372 v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~  450 (645)
                      +.++.+.++|+.+++.+. ++.+..+|.... . ...+........+......+.+.++| .++++...++.|..||.. 
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk-~-l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNMKGE-V-LSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPN-  154 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECTTSC-E-EEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTT-
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeCCCC-E-EEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEECCC-
Confidence            889999999999999887 777777776433 2 22333222111111234456788887 789999999999999976 


Q ss_pred             ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCc
Q 006424          451 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK  499 (645)
Q Consensus       451 ~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~  499 (645)
                      ......... ...+.++.+.++|+.+++++.+++|..+|..+++..+..
T Consensus       155 G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          155 GQLLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             SCEEEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence            333333321 235567788899999999998899999999988754443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.41  E-value=9.7e-10  Score=108.90  Aligned_cols=238  Identities=7%  Similarity=-0.009  Sum_probs=167.7

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .....+.++++.++|++.++...++.|.+||.. +....                                         
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-----------------------------------------   54 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-----------------------------------------   54 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-----------------------------------------
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-----------------------------------------
Confidence            345678999999999988887788999999876 32110                                         


Q ss_pred             CCceeeccCccCeEEEEEcCCCeEEEE-eCCCcEEEEecCCCeEEEEe-c-CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSNYLLSC-SMDKTVRMWQVGCNQCLNVF-D-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~~l~s~-s~dg~I~iwd~~~~~~~~~~-~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                         ..+..+...+.++++.+++.++.+ ..++.|..+|.. ++..... . ....+.++++.+ +++++++...++.|..
T Consensus        55 ---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~  129 (300)
T 2qc5_A           55 ---FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGK  129 (300)
T ss_dssp             ---EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEE
T ss_pred             ---EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEE
Confidence               011123456888999988854444 447889999988 5543221 1 346789999998 8888877766889999


Q ss_pred             EeCCCCcEEEe--eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424          355 WGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       355 wd~~~~~~~~~--~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                      ||.. ++...+  ......+.+++++++|+..++...++.|..||. .....  .+....    ....+.++.+.++| .
T Consensus       130 ~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~--~~~~~~----~~~~~~~i~~d~~g-~  200 (300)
T 2qc5_A          130 LTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE--EYPLPT----NAAAPVGITSGNDG-A  200 (300)
T ss_dssp             ECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE--EEECSS----TTCCEEEEEECTTS-S
T ss_pred             ECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE--EeeCCC----CCCCcceEEECCCC-C
Confidence            9988 655543  223467899999999996665556788999988 33322  122211    23568899999987 6


Q ss_pred             EEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          433 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       433 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      ++++....+.|.+||.......+........+.+++++++|++.++...++.|..||..
T Consensus       201 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          201 LWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             EEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            66666667889999975333333333345678999999999977777677899999983

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.41  E-value=1.7e-11  Score=138.37  Aligned_cols=241  Identities=17%  Similarity=0.112  Sum_probs=157.7

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGED-----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      +|...+..++|||||++||.++.+     ..|++||+.++...                                     
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~-------------------------------------  202 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL-------------------------------------  202 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE-------------------------------------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------------------
Confidence            344578999999999999887654     35999999874321                                     


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCc--------------EEEEecCCCeE--EEEec---CCCcEEEE
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKT--------------VRMWQVGCNQC--LNVFD---HHNYVTCV  333 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~--------------I~iwd~~~~~~--~~~~~---~~~~v~~l  333 (645)
                              . ...+...+..++|+|+..|+.++.++.              |++|++.++..  ...+.   +...+..+
T Consensus       203 --------~-~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          203 --------A-DELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             --------E-EEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             --------C-ccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence                    1 111122235688998866666666554              89999977652  22332   33358899


Q ss_pred             EEeeCCCCEEEEEeCCC-----cEEEEeCCCC--c-EEEeeccCCCeEEEEEccCCCEEEEEecC----CeEEEEEecCC
Q 006424          334 QFNPIDDNYFISGSIDG-----KVRIWGVCEK--R-VVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGN  401 (645)
Q Consensus       334 ~~~p~~~~~l~s~s~dg-----~i~vwd~~~~--~-~~~~~~~~~~v~~l~~sp~g~~l~~g~~d----g~i~iwd~~~~  401 (645)
                      .|+| ++++|+..+.++     .|++||+.++  + ...+..+...+.... +|+|+.|+..+.+    +.|.+||+.+.
T Consensus       274 ~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          274 SVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             EECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             EECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            9999 999888777544     7999999876  5 555655555555553 4899988887764    45999998764


Q ss_pred             ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--cc-eeeEeecCCCCCeEEEEEecCCCEEEE
Q 006424          402 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DV-IHKFKGLPKSGSQMSASFTTTGKHIIS  478 (645)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--~~-~~~~~~~~~~~~i~~v~~sp~~~~l~t  478 (645)
                      ......+ ...    +...+..+.++ ++ .++++...|+..+||...  .. ...+.. ...+.+..+.++|+++.|+.
T Consensus       352 ~~~~~~l-~~~----~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~  423 (741)
T 1yr2_A          352 TPRFDTV-VPE----SKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDGKPAGAVSL-PGIGSASGLSGRPGDRHAYL  423 (741)
T ss_dssp             SCEEEEE-ECC----CSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTSCEEEECBC-SSSCEEEEEECCBTCSCEEE
T ss_pred             ccccEEE-ecC----CCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCceeeccC-CCCeEEEEeecCCCCCEEEE
Confidence            2011111 111    12346677787 33 788888899887777533  21 222222 13567888999999886653


Q ss_pred             E-e---CCccEEEEeCCCCC
Q 006424          479 I-G---DDCRVYVWNYDELC  494 (645)
Q Consensus       479 ~-s---~dg~I~iwd~~~~~  494 (645)
                      . +   ..++|++||+.+++
T Consensus       424 ~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          424 SFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEETTEEEEEEEEETTTTE
T ss_pred             EEcCCCCCCEEEEEECCCCc
Confidence            2 2   35899999998765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.36  E-value=7.1e-10  Score=119.70  Aligned_cols=194  Identities=13%  Similarity=0.104  Sum_probs=146.9

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC--CCcEEEeeccCCCeEEEEE
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EKRVVDWADVRDVISAICY  377 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~v~~l~~  377 (645)
                      .+++...+++|.++|..+++.+..+.....+..+.|+| +++++++++.|+.|.+||+.  +.+.+...........++|
T Consensus       169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~  247 (567)
T 1qks_A          169 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  247 (567)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEE
Confidence            56677888999999999999999988777788999999 99999999999999999995  6666665555556789999


Q ss_pred             c----cCCCEEEEEec-CCeEEEEEecCCceeeeEEeecccc-c---cC-CCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424          378 I----PDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRK-K---TS-GNKITGIQFSRDESQRIMITSEDSKLRILD  447 (645)
Q Consensus       378 s----p~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~-~---~~-~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd  447 (645)
                      +    |+|+++++++. ++.+.++|..+.+.. ..+...+.. .   .| ...+..+..+++++.+++....+|.|.++|
T Consensus       248 s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~-~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd  326 (567)
T 1qks_A          248 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK-KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  326 (567)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEE-EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             ccccCCCCCEEEEEEccCCeEEEEECCCCcEE-EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEe
Confidence            9    69998888765 589999998876653 333322110 0   01 236788999998767777777789999999


Q ss_pred             CCcce-eeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCCc
Q 006424          448 GVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF  495 (645)
Q Consensus       448 ~~~~~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~~  495 (645)
                      ..... ..............+.|+|+|++++++. .++.|.++|+.+++.
T Consensus       327 ~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl  376 (567)
T 1qks_A          327 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL  376 (567)
T ss_dssp             TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred             cCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence            76431 1111112344567889999999987765 578999999998753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.35  E-value=1.5e-09  Score=107.81  Aligned_cols=228  Identities=12%  Similarity=0.090  Sum_probs=151.5

Q ss_pred             ccCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          199 HKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       199 H~~~V~~l~fspd-g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      +..---+..|+|+ +.++++...++.|..||..++.                                            
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~--------------------------------------------   46 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ--------------------------------------------   46 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--------------------------------------------
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc--------------------------------------------
Confidence            4445668899995 5566777778999999987632                                            


Q ss_pred             CCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCC---
Q 006424          278 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSID---  349 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~s~d---  349 (645)
                        ...+ .+...+.++++++++.++.+. ++.|.+||.++++......     ....++.++++| +++++++...+   
T Consensus        47 --~~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~  121 (297)
T 3g4e_A           47 --VQRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETA  121 (297)
T ss_dssp             --EEEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSB
T ss_pred             --EEEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccc
Confidence              1112 234678999999998666555 5689999998887644332     224588999999 88876654321   


Q ss_pred             --------CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEE-ecCCeEEEEEec--CCceeeeEEeeccccccCC
Q 006424          350 --------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKAS--GNDLKLEKVDFHDRKKTSG  418 (645)
Q Consensus       350 --------g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~  418 (645)
                              +.|+.++.. ++...........+.++|+|+++.++++ +.++.|..|++.  +...........  .....
T Consensus       122 ~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~--~~~~~  198 (297)
T 3g4e_A          122 PAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK--LEKEE  198 (297)
T ss_dssp             TTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE--CCGGG
T ss_pred             cccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE--CCCCC
Confidence                    244444543 4444444445567899999999977655 557899999984  333221111111  00112


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEe-cCCCEEEEEeC
Q 006424          419 NKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFT-TTGKHIISIGD  481 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~s-p~~~~l~t~s~  481 (645)
                      .....+++.++| ++.++...++.|..||..+  ....+..  +...+++++|+ |+++.|+.++.
T Consensus       199 ~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          199 QIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             CEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence            457889999998 7777778889999999763  3333333  45678999998 88887766654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.34  E-value=1.9e-10  Score=112.32  Aligned_cols=221  Identities=8%  Similarity=0.014  Sum_probs=147.7

Q ss_pred             CeEEEEEcCCCeEEE-E-eCCCcEEEEecCCCeEEEE-ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424          289 DVLDLAWSNSNYLLS-C-SMDKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  365 (645)
Q Consensus       289 ~V~~l~~s~~~~l~s-~-s~dg~I~iwd~~~~~~~~~-~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~  365 (645)
                      ...++++++++.++. + +.++.|.+||..++..... ......+.++++++ +++++++.. ++.|.+||..+.....+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence            678899999885444 4 6788999999865543322 12335678899999 888666655 88999999887765544


Q ss_pred             ec-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEE
Q 006424          366 AD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  444 (645)
Q Consensus       366 ~~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~  444 (645)
                      .. ....+..++++++|+.+++...++.|.+|+..+......   ..    .....+.+++++++| .++++...++.|.
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~---~~----~~~~~p~~i~~~~~g-~l~v~~~~~~~i~  174 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL---PF----TGLNDPDGVAVDNSG-NVYVTDTDNNRVV  174 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC---CC----CSCCSCCCEEECTTC-CEEEEEGGGTEEE
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee---cc----ccCCCceeEEEeCCC-CEEEEECCCCEEE
Confidence            32 235789999999998777777788999997554332111   11    112457789999998 6777767788999


Q ss_pred             EEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCC
Q 006424          445 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI  524 (645)
Q Consensus       445 iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~  524 (645)
                      +||................+.+++++++|.++++...++.|.+|+..+......          .........+++++++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~----------~~~~~~~p~~i~~~~~  244 (270)
T 1rwi_B          175 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL----------PFTGLNTPLAVAVDSD  244 (270)
T ss_dssp             EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC----------CCCSCSCEEEEEECTT
T ss_pred             EEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee----------ccCCCCCceeEEECCC
Confidence            999765433322222336789999999998888877789999999865422110          0011134567888888


Q ss_pred             Ccccc
Q 006424          525 GTEQK  529 (645)
Q Consensus       525 ~~~l~  529 (645)
                      |...+
T Consensus       245 g~l~v  249 (270)
T 1rwi_B          245 RTVYV  249 (270)
T ss_dssp             CCEEE
T ss_pred             CCEEE
Confidence            76333

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.34  E-value=2.1e-10  Score=129.42  Aligned_cols=223  Identities=11%  Similarity=0.031  Sum_probs=138.8

Q ss_pred             CccCeEEEEEcCCC-eEEEEeCC-----CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc--------
Q 006424          286 HKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK--------  351 (645)
Q Consensus       286 h~~~V~~l~~s~~~-~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~--------  351 (645)
                      |...+..++||||| +|+.++.+     ..|++||+.+++.+....+...+..++|+| + +.|+.++.++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEEST-T-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEEC-C-CEEEEEEecCccccccccc
Confidence            44578899999998 66655443     369999999998765432222335789999 8 88888876654        


Q ss_pred             ------EEEEeCCCCc---EEEeec--cCCCeEEEEEccCCCEEEEEecCC-----eEEEEEecCCcee-eeEEeecccc
Q 006424          352 ------VRIWGVCEKR---VVDWAD--VRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLK-LEKVDFHDRK  414 (645)
Q Consensus       352 ------i~vwd~~~~~---~~~~~~--~~~~v~~l~~sp~g~~l~~g~~dg-----~i~iwd~~~~~~~-~~~~~~~~~~  414 (645)
                            |++|++.++.   ......  +...+..+.|+|||++|+..+.++     .|++||+.+.... ...+....  
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--  316 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL--  316 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS--
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC--
Confidence                  8999997765   222222  233588999999999998877554     8999999876222 22222111  


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEEC----CCeEEEEECCcc---eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEE
Q 006424          415 KTSGNKITGIQFSRDESQRIMITSE----DSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV  487 (645)
Q Consensus       415 ~~~~~~i~~i~~s~~g~~~l~~~s~----dg~I~iwd~~~~---~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~i  487 (645)
                          ...... ++|+| ..|+..+.    ++.|.+||+...   ...+. ..+...+..++|+ ++.++++...|+..+|
T Consensus       317 ----~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l  388 (741)
T 1yr2_A          317 ----KAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAKSQV  388 (741)
T ss_dssp             ----SSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred             ----CceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence                233333 34777 45555554    356999997653   12222 2244456678887 6678888888998777


Q ss_pred             EeCC-CCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcccc
Q 006424          488 WNYD-ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK  529 (645)
Q Consensus       488 wd~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~  529 (645)
                      |.++ ++...         ..+.+...+.+..++++|++..++
T Consensus       389 ~~~~~~g~~~---------~~l~~~~~~~v~~~~~s~d~~~l~  422 (741)
T 1yr2_A          389 LAFDLDGKPA---------GAVSLPGIGSASGLSGRPGDRHAY  422 (741)
T ss_dssp             EEEETTSCEE---------EECBCSSSCEEEEEECCBTCSCEE
T ss_pred             EEEeCCCCce---------eeccCCCCeEEEEeecCCCCCEEE
Confidence            7654 22110         111122234555666666665544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.34  E-value=5.5e-10  Score=116.19  Aligned_cols=239  Identities=11%  Similarity=0.060  Sum_probs=160.0

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      .....|+|+++|+++++...++.|++||..++...                                             
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~---------------------------------------------  165 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT---------------------------------------------  165 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------------------------------------
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------------------------------
Confidence            46889999999998888888899999998763221                                             


Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCCC--cEEEEecCCCeEEEEe----c-CCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVF----D-HHNYVTCVQFNPIDDNYFISGSIDGKV  352 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~dg--~I~iwd~~~~~~~~~~----~-~~~~v~~l~~~p~~~~~l~s~s~dg~i  352 (645)
                      ..... ..... ++|++++ .|+++..++  .|.+++...+.....+    . ....+.+++++| ++..|+++..++.|
T Consensus       166 ~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I  242 (409)
T 3hrp_A          166 TVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNF  242 (409)
T ss_dssp             EEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEE
T ss_pred             Eeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcE
Confidence            11111 22223 8899987 778887766  7888888765543343    2 445678899999 55666667778899


Q ss_pred             EEEeCCCCcEEEe----e-ccCCCe-E-EEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeec---cc-----ccc
Q 006424          353 RIWGVCEKRVVDW----A-DVRDVI-S-AICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFH---DR-----KKT  416 (645)
Q Consensus       353 ~vwd~~~~~~~~~----~-~~~~~v-~-~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---~~-----~~~  416 (645)
                      +.||..++....+    . +....- . .++|+|+ +.++++-..++.|+.|+......  ......   +.     ...
T Consensus       243 ~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~--~~~g~~~~~g~~dg~~~~~  320 (409)
T 3hrp_A          243 GRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE--WFCGSATQKTVQDGLREEA  320 (409)
T ss_dssp             EEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--EEEECTTCCSCBCEEGGGC
T ss_pred             EEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE--EEEeCCCCCCcCCCccccc
Confidence            9999987765443    1 111112 3 9999996 54555555678899998765411  111110   00     000


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEE-CCCeEEEEECC-cceeeEeecC-------------CCCCeEEEEEecCCCEEEEEeC
Q 006424          417 SGNKITGIQFSRDESQRIMITS-EDSKLRILDGV-DVIHKFKGLP-------------KSGSQMSASFTTTGKHIISIGD  481 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s-~dg~I~iwd~~-~~~~~~~~~~-------------~~~~i~~v~~sp~~~~l~t~s~  481 (645)
                      .-.....++++++| .++++-+ .++.|+.|+.. .....+.+..             .-.....++++++|.++++-..
T Consensus       321 ~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~  399 (409)
T 3hrp_A          321 LFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW  399 (409)
T ss_dssp             BCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred             EeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence            12347899999998 6777777 78999999954 3333343320             1245889999999888888888


Q ss_pred             CccEEEEeC
Q 006424          482 DCRVYVWNY  490 (645)
Q Consensus       482 dg~I~iwd~  490 (645)
                      +++|+.+++
T Consensus       400 n~~Ir~i~~  408 (409)
T 3hrp_A          400 GKAIRKYAV  408 (409)
T ss_dssp             TCEEEEEEE
T ss_pred             CCeEEEEEe
Confidence            899988875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.34  E-value=2.7e-11  Score=123.35  Aligned_cols=188  Identities=5%  Similarity=0.000  Sum_probs=131.7

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      .++.+++++...++++|+.++ +++|++++......  ....                                +.++..
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~--------------------------------~~~~~~   83 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT--SDST--------------------------------PLTFKW   83 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH--SSSC--------------------------------CCCCSE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc--cccc--------------------------------cccceE
Confidence            689999999999999999986 66699875321000  0000                                011112


Q ss_pred             eeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424          282 ELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  360 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~  360 (645)
                      .. .+.. |+.++| .+..|+++ .++.|++||+.+....... .+...+.++.+.+ .  .+++++.||.|.+||+.++
T Consensus        84 ~~-~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~  156 (388)
T 1xip_A           84 EK-EIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTK  156 (388)
T ss_dssp             EE-ECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTC
T ss_pred             Ee-eCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCC
Confidence            22 3566 999999 33477777 8899999999765543333 4666788887765 2  3888899999999999987


Q ss_pred             cEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee-eeEEeeccccc---cCCCCeEEEEEcCCCCcEEEE
Q 006424          361 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKK---TSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       361 ~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~---~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      ....   +...|++++|+|+|  +++|..||++++|+....... ...+.......   .+...|.+++|.+++ .++++
T Consensus       157 ~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~  230 (388)
T 1xip_A          157 STKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV  230 (388)
T ss_dssp             CEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred             cccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence            7654   45689999999999  788999999999998877642 22232111111   245789999999986 66664


Q ss_pred             E
Q 006424          437 T  437 (645)
Q Consensus       437 ~  437 (645)
                      -
T Consensus       231 y  231 (388)
T 1xip_A          231 F  231 (388)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.32  E-value=3.7e-09  Score=108.38  Aligned_cols=247  Identities=8%  Similarity=-0.027  Sum_probs=156.2

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          205 TLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       205 ~l~fspdg~~L~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      .++|||||++|+.+.          .++.|.+||..+.........+.                                
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~--------------------------------  117 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD--------------------------------  117 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC--------------------------------
Confidence            899999999988875          36789999998643322111000                                


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC-eEEEEeC--CCcEEEEecCCCeEEEE-ecCCCcEEEEEEeeCCCCEEEEEeCCC
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDG  350 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~--dg~I~iwd~~~~~~~~~-~~~~~~v~~l~~~p~~~~~l~s~s~dg  350 (645)
                          ..+..  +...-..+.|+|+| +|+.+..  ++.|.++| .+++.+.. +.....   +.+.|...+.+++.+.||
T Consensus       118 ----~~~~~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg  187 (373)
T 2mad_H          118 ----APRFD--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQG  187 (373)
T ss_pred             ----ccccc--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCC
Confidence                00000  01234578999998 6776664  57899999 99998888 765443   445563445677788899


Q ss_pred             cEEEEeCCCCcEEEeec------cCCC-eEEEEEccCCCEEEEEecCCeEEEEEecCCceee-eEEeeccc----cccCC
Q 006424          351 KVRIWGVCEKRVVDWAD------VRDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDR----KKTSG  418 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~~~------~~~~-v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~----~~~~~  418 (645)
                      .+.++|. +++......      ...+ .....+.+++..++..+..+.+.+.|+.+..... ..+.....    .....
T Consensus       188 ~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p  266 (373)
T 2mad_H          188 GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRP  266 (373)
T ss_pred             CEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceec
Confidence            9999999 776653211      1111 1234566776665555678899999997553221 12211110    00011


Q ss_pred             CCeEEEEEcCCCCcEEEEEEC----------CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-EEEEEe-CCccEE
Q 006424          419 NKITGIQFSRDESQRIMITSE----------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVY  486 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~----------dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s-~dg~I~  486 (645)
                      .....+.++|++. .++++..          ++.|.++|..+....-... -.....++.|+|||+ +++++. .++.|.
T Consensus       267 ~g~~~~~~s~d~~-~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~  344 (373)
T 2mad_H          267 GGWQQVAYLKSSD-GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLH  344 (373)
T ss_pred             CceEeEEECCCCC-EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEE
Confidence            2244478899984 5554432          4689999987544332222 233678999999999 777777 589999


Q ss_pred             EEeCCCCCcC
Q 006424          487 VWNYDELCFP  496 (645)
Q Consensus       487 iwd~~~~~~~  496 (645)
                      ++|..+++..
T Consensus       345 ViD~~t~~vv  354 (373)
T 2mad_H          345 IYDAGAGDQD  354 (373)
T ss_pred             EEECCCCCEE
Confidence            9999987543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.29  E-value=3.3e-09  Score=105.03  Aligned_cols=234  Identities=7%  Similarity=0.075  Sum_probs=160.0

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      +...+.+++++++|++.++...++.|..||.. +...                                           
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-------------------------------------------   95 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-------------------------------------------   95 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------------------------
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-------------------------------------------
Confidence            34578999999999988877778889999876 2211                                           


Q ss_pred             CceeeccCccCeEEEEEcCCCeE-EEEeCCCcEEEEecCCCeEEEE-ec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          279 PLQELHGHKGDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQCLNV-FD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~~l-~s~s~dg~I~iwd~~~~~~~~~-~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                       ...+......+.++++.+++.+ ++...++.|..+|.. ++.... +. ....+.++++.+ +++++++...++.|..|
T Consensus        96 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           96 -EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRI  172 (300)
T ss_dssp             -EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEE
T ss_pred             -EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEE
Confidence             0111122356788999988744 444457899999987 655432 22 345789999999 88877766667889999


Q ss_pred             eCCCCcEEEee--ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424          356 GVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  433 (645)
Q Consensus       356 d~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~  433 (645)
                      |. +++...+.  .....+..++++++|+..++....+.|..||.. .....  ....    .....+.++++.++| .+
T Consensus       173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~--~~~~----~~~~~~~~i~~d~~g-~l  243 (300)
T 2qc5_A          173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GEISE--YDIP----TPNARPHAITAGKNS-EI  243 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEE--EECS----STTCCEEEEEECSTT-CE
T ss_pred             CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-CcEEE--EECC----CCCCCceEEEECCCC-CE
Confidence            98 55554432  334568899999999766666667789999983 33221  1111    123568899999997 56


Q ss_pred             EEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          434 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      +++...++.|..||.......+........+.+++++++|++.++.. . .|..+|.
T Consensus       244 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          244 WFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             EEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             EEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            66665679999999754444444333455688999999998666654 4 6776664

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.29  E-value=1.3e-09  Score=108.82  Aligned_cols=231  Identities=11%  Similarity=0.072  Sum_probs=155.6

Q ss_pred             cccccCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          196 IQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      +..+........|+|+|+ +++++..++.|..|+... .                                         
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~-----------------------------------------   77 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T-----------------------------------------   77 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C-----------------------------------------
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C-----------------------------------------
Confidence            444555678899999998 667777889999998732 1                                         


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCCeEEEEeC-CCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEE---
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSM-DKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFIS---  345 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s---  345 (645)
                           ...+..+...+..++++++|.++.+.. ++.|.+|+.+ ++......     ....+..++++| +++++++   
T Consensus        78 -----~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~  150 (305)
T 3dr2_A           78 -----VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPP  150 (305)
T ss_dssp             -----EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCS
T ss_pred             -----EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcC
Confidence                 233344556788999999986666654 4789999986 55433222     123467899999 8988876   


Q ss_pred             -EeC-------------CCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC------CeEEEEEecCCceee
Q 006424          346 -GSI-------------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLKL  405 (645)
Q Consensus       346 -~s~-------------dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d------g~i~iwd~~~~~~~~  405 (645)
                       |..             .+.|+.||..+++..... .......++|+|+++.|+++...      +.|..|++.......
T Consensus       151 ~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~  229 (305)
T 3dr2_A          151 FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHD  229 (305)
T ss_dssp             GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEE
T ss_pred             CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccC
Confidence             331             256888888777665554 44567889999999988887765      789999987654211


Q ss_pred             eEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424          406 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR  484 (645)
Q Consensus       406 ~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~  484 (645)
                      .......    .......+++.++| + |.+++.+ .|.+|+... ....+..  .. .+.+++|+++++.|+.++.++.
T Consensus       230 ~~~~~~~----~~~~pdgi~~d~~G-~-lwv~~~~-gv~~~~~~g~~~~~~~~--~~-~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          230 RRHFASV----PDGLPDGFCVDRGG-W-LWSSSGT-GVCVFDSDGQLLGHIPT--PG-TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             EEEEECC----SSSCCCSEEECTTS-C-EEECCSS-EEEEECTTSCEEEEEEC--SS-CCCEEEECTTSCEEEEEETTEE
T ss_pred             CeEEEEC----CCCCCCeEEECCCC-C-EEEecCC-cEEEECCCCCEEEEEEC--CC-ceeEEEEeCCCCEEEEEcCCeE
Confidence            1111111    12345678899998 5 4444444 599999753 2333333  22 5889999999998888887653


Q ss_pred             EE
Q 006424          485 VY  486 (645)
Q Consensus       485 I~  486 (645)
                      .+
T Consensus       300 ~~  301 (305)
T 3dr2_A          300 WM  301 (305)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.29  E-value=3.2e-09  Score=107.02  Aligned_cols=222  Identities=11%  Similarity=0.006  Sum_probs=147.6

Q ss_pred             cEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          202 CIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       202 ~V~~l~fspdg-~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      -..+..|+|++ .++++...++.|..||..++.                                              .
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~----------------------------------------------~   83 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGR----------------------------------------------K   83 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE----------------------------------------------E
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc----------------------------------------------E
Confidence            35678999974 466677778899999987631                                              1


Q ss_pred             eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecC-----CCcEEEEEEeeCCCCEEEEEeC------C
Q 006424          281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-----HNYVTCVQFNPIDDNYFISGSI------D  349 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-----~~~v~~l~~~p~~~~~l~s~s~------d  349 (645)
                      ..+. +...+.+++|++++.++.++.+ .|.+||..+++.......     ...+.+++++| +++++++...      .
T Consensus        84 ~~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~  160 (326)
T 2ghs_A           84 TVHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGA  160 (326)
T ss_dssp             EEEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTC
T ss_pred             EEEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCc
Confidence            1121 2457899999999865556654 499999988876443321     24688999999 8887665542      2


Q ss_pred             CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEec--CC-ceee-eEE-eeccccccCCCCeEE
Q 006424          350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKAS--GN-DLKL-EKV-DFHDRKKTSGNKITG  423 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~--~~-~~~~-~~~-~~~~~~~~~~~~i~~  423 (645)
                      +.|..++  +++...+.........++|+|+|+.++++. .++.|.+||+.  ++ .... ..+ .+.    ........
T Consensus       161 ~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~----~~~~~p~g  234 (326)
T 2ghs_A          161 GSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST----GIKGGMDG  234 (326)
T ss_dssp             EEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT----TSSSEEEE
T ss_pred             eEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC----CCCCCCCe
Confidence            4566666  555554444445678999999999776654 56899999986  33 2211 111 111    11245678


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEEECCcc-eeeEeecCCCCCeEEEEEe-cCCCEEEEEeC
Q 006424          424 IQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFT-TTGKHIISIGD  481 (645)
Q Consensus       424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~i~~v~~s-p~~~~l~t~s~  481 (645)
                      +++.++| .++++...++.|.+||.... ...+..  ....+.+++|+ ++++.|+.++.
T Consensus       235 i~~d~~G-~lwva~~~~~~v~~~d~~g~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          235 SVCDAEG-HIWNARWGEGAVDRYDTDGNHIARYEV--PGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEECTTS-CEEEEEETTTEEEEECTTCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEEB
T ss_pred             eEECCCC-CEEEEEeCCCEEEEECCCCCEEEEEEC--CCCCcEEEEEecCCCCEEEEEec
Confidence            9999998 67777667789999997422 233332  44568999998 88887765554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.26  E-value=4.1e-10  Score=125.89  Aligned_cols=240  Identities=14%  Similarity=0.119  Sum_probs=152.5

Q ss_pred             cccCcEEEEEECCCCCEEEEE-----eCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          198 AHKGCIWTLKFSPDGRYLASG-----GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sg-----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      +|...+..++|||||++||-+     +.+..|++||+.++....                                    
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~------------------------------------  169 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE------------------------------------  169 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE------------------------------------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc------------------------------------
Confidence            466789999999999988843     333579999998743210                                    


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCC-------------cEEEEecCCCeE--EEEec----CCCcEEE
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK-------------TVRMWQVGCNQC--LNVFD----HHNYVTC  332 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg-------------~I~iwd~~~~~~--~~~~~----~~~~v~~  332 (645)
                              ..+.  ......++|+ |+ .|+.++.+.             .|++|++.++..  ...+.    +......
T Consensus       170 --------~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~  238 (693)
T 3iuj_A          170 --------TPLK--DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVG  238 (693)
T ss_dssp             --------EEEE--EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEE
T ss_pred             --------cccC--CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEE
Confidence                    0111  1113467899 77 777777764             399999977643  23332    2345788


Q ss_pred             EEEeeCCCCEEEEEeC----CCcEEEEeCCCC--cEEEeeccCCCeEEEEEccCCCEEEEEec-C---CeEEEEEecCCc
Q 006424          333 VQFNPIDDNYFISGSI----DGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSI-T---GTCHFYKASGND  402 (645)
Q Consensus       333 l~~~p~~~~~l~s~s~----dg~i~vwd~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-d---g~i~iwd~~~~~  402 (645)
                      +.|+| ++++|+....    +..|+++|+.++  ....+..+....... ++++|..|+..+. +   +.|..+|+.+..
T Consensus       239 ~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~  316 (693)
T 3iuj_A          239 ATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG  316 (693)
T ss_dssp             EEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             EEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            99999 8887755432    248999999776  556666666655555 6677776665543 2   578889987654


Q ss_pred             ee-eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC--eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424          403 LK-LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI  479 (645)
Q Consensus       403 ~~-~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~  479 (645)
                      .. ...+..+.      ..+.  .|++++..++++...++  .|++||..............+.+..+.++++++.|+..
T Consensus       317 ~~~~~~l~~~~------~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~  388 (693)
T 3iuj_A          317 PAHWRDLIPER------QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFG  388 (693)
T ss_dssp             GGGCEEEECCC------SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred             ccccEEEecCC------CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEE
Confidence            31 11221121      2233  78888744444555554  68888876332222222244567778888888877665


Q ss_pred             eCC----ccEEEEeCCCCC
Q 006424          480 GDD----CRVYVWNYDELC  494 (645)
Q Consensus       480 s~d----g~I~iwd~~~~~  494 (645)
                      ..+    ++|+.||+.+++
T Consensus       389 ~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          389 FENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EECSSSCCEEEEECTTTCC
T ss_pred             ecCCCCCCEEEEEECCCCe
Confidence            544    899999998764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.24  E-value=6.5e-09  Score=103.83  Aligned_cols=229  Identities=8%  Similarity=0.010  Sum_probs=148.4

Q ss_pred             eccCccCeEEEEEcCCCeEE-E-------EeCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCC-CCEEEEEeC
Q 006424          283 LHGHKGDVLDLAWSNSNYLL-S-------CSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPID-DNYFISGSI  348 (645)
Q Consensus       283 l~~h~~~V~~l~~s~~~~l~-s-------~s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~-~~~l~s~s~  348 (645)
                      +...-....+++|++++.++ +       +..++.|.+||..+++......     +...+.++++++ + ++++++ +.
T Consensus        13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~-~~   90 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVA-DM   90 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEE-ET
T ss_pred             hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEE-EC
Confidence            34444567889999888444 4       3678999999988877654332     446789999998 7 554444 44


Q ss_pred             CCcEEEEeCCCCcEEEe-ecc-----CCCeEEEEEccCCCEEEEEecC---------------CeEEEEEecCCceeeeE
Q 006424          349 DGKVRIWGVCEKRVVDW-ADV-----RDVISAICYIPDGKGFIVGSIT---------------GTCHFYKASGNDLKLEK  407 (645)
Q Consensus       349 dg~i~vwd~~~~~~~~~-~~~-----~~~v~~l~~sp~g~~l~~g~~d---------------g~i~iwd~~~~~~~~~~  407 (645)
                      .+.|.+||.. ++...+ ...     ...+.+++++++|+++++...+               +.|..|+.. ....  .
T Consensus        91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~--~  166 (314)
T 1pjx_A           91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI--Q  166 (314)
T ss_dssp             TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE--E
T ss_pred             CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE--E
Confidence            5579999998 776554 321     2358899999999877766554               456666654 2221  1


Q ss_pred             EeeccccccCCCCeEEEEEc----CCCCcEEEEEECCCeEEEEECC-cce----eeEee-cCCC-CCeEEEEEecCCCEE
Q 006424          408 VDFHDRKKTSGNKITGIQFS----RDESQRIMITSEDSKLRILDGV-DVI----HKFKG-LPKS-GSQMSASFTTTGKHI  476 (645)
Q Consensus       408 ~~~~~~~~~~~~~i~~i~~s----~~g~~~l~~~s~dg~I~iwd~~-~~~----~~~~~-~~~~-~~i~~v~~sp~~~~l  476 (645)
                      .. ..     ......++++    |++..++++...++.|.+||.. ...    ..+.. ..+. ..+..++++++|+++
T Consensus       167 ~~-~~-----~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~  240 (314)
T 1pjx_A          167 VD-TA-----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL  240 (314)
T ss_dssp             EE-EE-----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred             ec-cC-----CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence            11 11     1346788999    9973334444568999999964 211    12221 1122 567889999999998


Q ss_pred             EEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCC
Q 006424          477 ISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS  533 (645)
Q Consensus       477 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~  533 (645)
                      ++...++.|.+||.+++......         . .+...+.++++++++..|+....
T Consensus       241 v~~~~~~~i~~~d~~~g~~~~~~---------~-~~~~~~~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          241 VANWGSSHIEVFGPDGGQPKMRI---------R-CPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             EEEETTTEEEEECTTCBSCSEEE---------E-CSSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEcCCCEEEEEcCCCCcEeEEE---------e-CCCCCceeEEECCCCCEEEEEeC
Confidence            88888899999998755321110         1 12245677888888886665443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.23  E-value=2.5e-09  Score=108.35  Aligned_cols=259  Identities=10%  Similarity=-0.007  Sum_probs=161.9

Q ss_pred             EEECCCCCEEEEEeC-----CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          206 LKFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       206 l~fspdg~~L~sgs~-----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      ....|+++.+.....     ++.|.+.|..+.                                             +.+
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~---------------------------------------------~v~   72 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---------------------------------------------RVI   72 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---------------------------------------------EEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCC---------------------------------------------eEE
Confidence            345789987777755     678999999873                                             333


Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEe----------CCCcEEEEecCCCeEEEEecCC--------CcEEEEEEeeCCCC
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDN  341 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s----------~dg~I~iwd~~~~~~~~~~~~~--------~~v~~l~~~p~~~~  341 (645)
                      ..+.....+ . ++++|++ +++.++          .++.|.+||..+++.+..+...        .....+.|+| +++
T Consensus        73 ~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk  149 (386)
T 3sjl_D           73 GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGK  149 (386)
T ss_dssp             EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSS
T ss_pred             EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCC
Confidence            444433334 3 8999998 565554          3678999999999988877421        2466789999 999


Q ss_pred             EEEEEeC--CCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecC-CceeeeEEeeccccccCC
Q 006424          342 YFISGSI--DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDLKLEKVDFHDRKKTSG  418 (645)
Q Consensus       342 ~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~  418 (645)
                      +++++..  ++.|.++|+.+++.+......+.  ...+....+.+++.+.||.+.+.++.. +... ....  .......
T Consensus       150 ~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~~--~~~~~~~  224 (386)
T 3sjl_D          150 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITHT--EVFHPED  224 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCE-EEEC--CCCSCTT
T ss_pred             EEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEE-Eeec--ceecccc
Confidence            9888864  68999999999998775544332  223333456777888899998888876 3331 1111  1110111


Q ss_pred             CCeE-EEEEc-CCCCcEEEEEECCCeEEEEECCcce----eeEeec--------CCCCCeEEEEEecCCCEEEEEeC---
Q 006424          419 NKIT-GIQFS-RDESQRIMITSEDSKLRILDGVDVI----HKFKGL--------PKSGSQMSASFTTTGKHIISIGD---  481 (645)
Q Consensus       419 ~~i~-~i~~s-~~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~--------~~~~~i~~v~~sp~~~~l~t~s~---  481 (645)
                      .++. ...|. ++| +++ ..+.+|.|++.|.....    ..+...        -..+....++++++++.++....   
T Consensus       225 ~~~~~~~~~~~~dG-~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~  302 (386)
T 3sjl_D          225 EFLINHPAYSQKAG-RLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD  302 (386)
T ss_dssp             SCBCSCCEEETTTT-EEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred             ccccccceeEcCCC-cEE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc
Confidence            2221 23564 565 444 46668999999975322    112100        01123335777999998888643   


Q ss_pred             -------CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc-cccc
Q 006424          482 -------DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT-EQKS  530 (645)
Q Consensus       482 -------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~-~l~~  530 (645)
                             .+.|.+.|+.+.+........           .....+++++|+. .|+.
T Consensus       303 ~~~hk~~~~~V~viD~~t~kv~~~i~vg-----------~~~~~lavs~D~~~~ly~  348 (386)
T 3sjl_D          303 EWRHKTASRFVVVLDAKTGERLAKFEMG-----------HEIDSINVSQDEKPLLYA  348 (386)
T ss_dssp             TTCTTSCEEEEEEEETTTCCEEEEEEEE-----------EEECEEEECSSSSCEEEE
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEECC-----------CCcceEEECCCCCeEEEE
Confidence                   257999999887533222111           1244666677765 4444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.22  E-value=2.1e-09  Score=109.21  Aligned_cols=245  Identities=13%  Similarity=0.063  Sum_probs=157.2

Q ss_pred             CcEEEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          201 GCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      .....++++|+|+++++..  .++.++||.+.++..  ..+..                                   ..
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~--~~~p~-----------------------------------~~   59 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL--IPFPP-----------------------------------QS   59 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE--EESCC-----------------------------------CC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe--ecCCC-----------------------------------cc
Confidence            6799999999999988864  234366666543211  01100                                   00


Q ss_pred             CceeeccCccCeEEEEEcCCCeEEEEeC------CCcEEEEecCCCeEEEEecC-------CCcEEEEEEeeCCCCEEEE
Q 006424          279 PLQELHGHKGDVLDLAWSNSNYLLSCSM------DKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~~l~s~s~------dg~I~iwd~~~~~~~~~~~~-------~~~v~~l~~~p~~~~~l~s  345 (645)
                        ....+|-..+..+++++++.|+.+..      ++.|.+||+.+++.+..+..       ...+..++++|.++..+++
T Consensus        60 --~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt  137 (343)
T 2qe8_A           60 --GNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS  137 (343)
T ss_dssp             --SSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEE
T ss_pred             --cCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEE
Confidence              01124567899999999886665543      47899999999987776642       2356899999823444455


Q ss_pred             Ee---CCCcEEEEeCCCCcEEEeecc------------------------------CCCeEEEEEccCCCEEEEEecCC-
Q 006424          346 GS---IDGKVRIWGVCEKRVVDWADV------------------------------RDVISAICYIPDGKGFIVGSITG-  391 (645)
Q Consensus       346 ~s---~dg~i~vwd~~~~~~~~~~~~------------------------------~~~v~~l~~sp~g~~l~~g~~dg-  391 (645)
                      ..   .++.|.+||+.+++.......                              ...+..++|+|+|+.|+++..++ 
T Consensus       138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~  217 (343)
T 2qe8_A          138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST  217 (343)
T ss_dssp             ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS
T ss_pred             cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC
Confidence            44   578999999988776553321                              12368899999999999887766 


Q ss_pred             eEEEEEec---CCcee----eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC-CcceeeEeecCCCCC
Q 006424          392 TCHFYKAS---GNDLK----LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG-VDVIHKFKGLPKSGS  463 (645)
Q Consensus       392 ~i~iwd~~---~~~~~----~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~-~~~~~~~~~~~~~~~  463 (645)
                      .+..++..   .....    ...+...+    +......++++++| .++++...++.|.+||. ......+........
T Consensus       218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g----~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~  292 (343)
T 2qe8_A          218 SMYRIKSADLSNLQLTDAELGSKIERYS----EKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVTDEKLSW  292 (343)
T ss_dssp             EEEEEEHHHHTCTTCCHHHHHTTCEEEE----ECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEECGGGSC
T ss_pred             eEEEEEHHHhcCCCCChhhhhcceEecc----cCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEEEECCceec
Confidence            44444432   11100    00000001    11345678999997 78888888999999998 332333332223456


Q ss_pred             eEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          464 QMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       464 i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                      +.+++|+++++++++.+..+.+.+|.
T Consensus       293 p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          293 TDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             CCeeEECCCCcEEEEeCccccccccc
Confidence            89999999999888887665555444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.21  E-value=7.8e-09  Score=102.65  Aligned_cols=224  Identities=14%  Similarity=0.041  Sum_probs=146.8

Q ss_pred             cCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424          288 GDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  365 (645)
Q Consensus       288 ~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~  365 (645)
                      .-.-+..|+++ + .+++...++.|..||..+++. ..+.....+.+++++| +++++++ . ++.|.+||..+++...+
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~   88 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVL   88 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence            34457788885 4 566667789999999987765 4455667899999999 8885554 4 56899999988876554


Q ss_pred             ecc-----CCCeEEEEEccCCCEEEEEecC---------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424          366 ADV-----RDVISAICYIPDGKGFIVGSIT---------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       366 ~~~-----~~~v~~l~~sp~g~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                      ...     ...++.++++|+|+++++....         ..-.+|.+..........  ..     ......++|+|++.
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--~~-----~~~pngi~~spdg~  161 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF--DQ-----VDISNGLDWSLDHK  161 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE--EE-----ESBEEEEEECTTSC
T ss_pred             EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe--ec-----cccccceEEcCCCC
Confidence            332     2357889999999966554321         234555554322111111  11     13467899999984


Q ss_pred             cEEEEEECCCeEEEEECC--cce----eeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCc
Q 006424          432 QRIMITSEDSKLRILDGV--DVI----HKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV  504 (645)
Q Consensus       432 ~~l~~~s~dg~I~iwd~~--~~~----~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~  504 (645)
                      .++++.+.++.|.+|+..  ...    ..+.. .........++++++|++.++...++.|.+||.++++.....     
T Consensus       162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i-----  236 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV-----  236 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE-----
T ss_pred             EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE-----
Confidence            455666778999999863  211    11221 122356789999999998888888889999998866422111     


Q ss_pred             ceeeeeecCCcEEEEecC-CCCccccccC
Q 006424          505 RSCEHFFSEGVSVAVQWP-GIGTEQKSLC  532 (645)
Q Consensus       505 ~~~~~~~~~g~~~~v~~s-~~~~~l~~~~  532 (645)
                           -.+...+..++|. |++..|+..+
T Consensus       237 -----~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          237 -----KLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             -----ECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             -----ECCCCCceEEEEeCCCCCEEEEEc
Confidence                 1123446677786 6777766443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.19  E-value=2.6e-09  Score=108.19  Aligned_cols=247  Identities=13%  Similarity=0.106  Sum_probs=151.6

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          205 TLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       205 ~l~fspdg~~L~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      .++++|||++|+.++          .++.|.+||..+.........+.+                               
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g-------------------------------  130 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA-------------------------------  130 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC-------------------------------
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc-------------------------------
Confidence            499999999887765          367899999988543221110000                               


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC-eEEEEeC--CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                         +..    .....-..+.++|+| +++.+..  ++.|.++|+.+++.+..+...+.   ....|...+.+++.+.||.
T Consensus       131 ---~r~----~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~  200 (386)
T 3sjl_D          131 ---PRF----LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGS  200 (386)
T ss_dssp             ---CCC----CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSC
T ss_pred             ---ccc----ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCC
Confidence               000    001234568999998 6666653  68999999999999998865442   2233535667888888999


Q ss_pred             EEEEeCCC-CcEEEee-cc----CCCe-EEEEEc-cCCCEEEEEecCCeEEEEEecCCceee-eEEeeccc----cccCC
Q 006424          352 VRIWGVCE-KRVVDWA-DV----RDVI-SAICYI-PDGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDR----KKTSG  418 (645)
Q Consensus       352 i~vwd~~~-~~~~~~~-~~----~~~v-~~l~~s-p~g~~l~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~----~~~~~  418 (645)
                      +.+.++.. ++..... ..    ...+ ....|. ++|++++ .+.+|.+++.|+.+..... ..+.....    .....
T Consensus       201 ~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p  279 (386)
T 3sjl_D          201 LAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP  279 (386)
T ss_dssp             EEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE
T ss_pred             EEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC
Confidence            99999876 5542211 11    1122 124554 5775555 5668999999997665322 22221000    00001


Q ss_pred             CCeEEEEEcCCCCcEEEEEEC---------CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-EEEEE-eCCccEEE
Q 006424          419 NKITGIQFSRDESQRIMITSE---------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISI-GDDCRVYV  487 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~---------dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~-s~dg~I~i  487 (645)
                      .....+.+++++..++++...         .+.|.++|..+....-... -...+.++.+++|++ +|+++ ..++.|.+
T Consensus       280 ~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-vg~~~~~lavs~D~~~~ly~tn~~~~~VsV  358 (386)
T 3sjl_D          280 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYI  358 (386)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECSSSSCEEEEEETTTTEEEE
T ss_pred             CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-CCCCcceEEECCCCCeEEEEEcCCCCeEEE
Confidence            233356778887444444331         3579999987543322221 123677999999997 66665 45899999


Q ss_pred             EeCCCCC
Q 006424          488 WNYDELC  494 (645)
Q Consensus       488 wd~~~~~  494 (645)
                      +|..+++
T Consensus       359 iD~~t~k  365 (386)
T 3sjl_D          359 HDAESGE  365 (386)
T ss_dssp             EETTTCC
T ss_pred             EECCCCc
Confidence            9999875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.18  E-value=5.1e-09  Score=108.86  Aligned_cols=203  Identities=13%  Similarity=0.028  Sum_probs=141.6

Q ss_pred             cCeEEEEEcCCCe-EEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCcEEE
Q 006424          288 GDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVD  364 (645)
Q Consensus       288 ~~V~~l~~s~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~  364 (645)
                      .....++|++++. +++...++.|++||..++............. ++|+| +++.|+++..++  .|.+++..++....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            4678999999885 4455566899999999888766655444444 89999 888888888766  79999887654432


Q ss_pred             ee----c-cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE-eeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424          365 WA----D-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV-DFHDRKKTSGNKITGIQFSRDESQRIMITS  438 (645)
Q Consensus       365 ~~----~-~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s  438 (645)
                      ..    . ....+.+++++|++..|+++..++.|+.||..+........ ...+.  ....+...++|+|++..++++-.
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~--~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS--LGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC--CCCSSCCEEEEETTTTEEEEEET
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC--CCCCccccEEEeCCCCEEEEEeC
Confidence            22    2 45668899999965566667778899999998665322100 01110  00011238999996446777777


Q ss_pred             CCCeEEEEECCcceeeEeecC-------------CCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCC
Q 006424          439 EDSKLRILDGVDVIHKFKGLP-------------KSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELC  494 (645)
Q Consensus       439 ~dg~I~iwd~~~~~~~~~~~~-------------~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~  494 (645)
                      .++.|+.|+.......+.+..             .-.....++++|+|+++++-+ .+++|+.|++.++.
T Consensus       287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            789999999765444444421             023578999999999888877 88999999976664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.16  E-value=4e-09  Score=107.35  Aligned_cols=133  Identities=8%  Similarity=0.041  Sum_probs=106.3

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .+.+ |+.++|  |+++|+++ .++.|++||+.+..                                            
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~--------------------------------------------  117 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS--------------------------------------------  117 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT--------------------------------------------
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh--------------------------------------------
Confidence            3566 999999  99999999 88999999998731                                            


Q ss_pred             CCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424          278 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  357 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~  357 (645)
                       .......|...+.++.+.+.+ +++++.||.|.+||+.++....   +...|+|++|+| +|  ++.|..||++++|+.
T Consensus       118 -~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~  189 (388)
T 1xip_A          118 -EFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAW  189 (388)
T ss_dssp             -CEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEE
T ss_pred             -ccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcC
Confidence             123344566778888877544 8889999999999999877654   456899999999 77  778999999999998


Q ss_pred             CCCcE--EE-e------e---ccCCCeEEEEEccCCCEEEE
Q 006424          358 CEKRV--VD-W------A---DVRDVISAICYIPDGKGFIV  386 (645)
Q Consensus       358 ~~~~~--~~-~------~---~~~~~v~~l~~sp~g~~l~~  386 (645)
                      ..+++  .. +      .   ++...|.+++|.+++.++++
T Consensus       190 ~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          190 RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            88774  32 3      2   36788999999999988876

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.15  E-value=6.9e-08  Score=98.86  Aligned_cols=221  Identities=10%  Similarity=-0.055  Sum_probs=137.5

Q ss_pred             EEEEcCCC-eEEEEe----------CCCcEEEEecCCCeEEEEecCC--------CcEEEEEEeeCCCCEEEEEeC--CC
Q 006424          292 DLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGSI--DG  350 (645)
Q Consensus       292 ~l~~s~~~-~l~s~s----------~dg~I~iwd~~~~~~~~~~~~~--------~~v~~l~~~p~~~~~l~s~s~--dg  350 (645)
                      .++++|++ +++.+.          .++.|.+||..+.+.+..+...        .....+.|+| ++++|+++..  ++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~  148 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP  148 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence            88999998 666554          3678999999988887766422        3456899999 9999998874  47


Q ss_pred             cEEEEeCCCCcEEEe-eccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC-eEEEEEc
Q 006424          351 KVRIWGVCEKRVVDW-ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK-ITGIQFS  427 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~-~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~s  427 (645)
                      .|.++| .+++.... ......   +.+.|++ +.+++.+.||.+.++|. +...... ....... ....+ .....+.
T Consensus       149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~-~~~~~~~-~~~~p~~~~~~~~  221 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA-GLVGAML-TAAQNLLTQPAQA  221 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE-Eeccccc-cCCcceeecceeE
Confidence            899999 99888766 554433   4455655 45566778999999999 5554311 1100000 00112 2334566


Q ss_pred             CCCCcEEEEEECCCeEEEEECCcce----eeEeecC--------CCCCeEEEEEecCCCEEEEEeC----------CccE
Q 006424          428 RDESQRIMITSEDSKLRILDGVDVI----HKFKGLP--------KSGSQMSASFTTTGKHIISIGD----------DCRV  485 (645)
Q Consensus       428 ~~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~--------~~~~i~~v~~sp~~~~l~t~s~----------dg~I  485 (645)
                      +++..++++ +.++.+.+.|.....    ..+....        .......+.++|+++.++.+..          ++.|
T Consensus       222 ~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V  300 (373)
T 2mad_H          222 NKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV  300 (373)
T ss_pred             ecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence            665344444 477899999975321    1111100        1122344788999998887653          3579


Q ss_pred             EEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc-cccccC
Q 006424          486 YVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT-EQKSLC  532 (645)
Q Consensus       486 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~-~l~~~~  532 (645)
                      .+.|..+.+.....           .-.+....++|+|||. .++...
T Consensus       301 ~VID~~t~~vv~~i-----------~~g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          301 TSVTGLVGQTSSQI-----------SLGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             EEEECCCCEEEEEE-----------ECCCCcCeEEECCCCCeEEEEEc
Confidence            99999877432211           1122345777788777 555443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.12  E-value=8.2e-08  Score=96.59  Aligned_cols=218  Identities=9%  Similarity=-0.026  Sum_probs=141.8

Q ss_pred             eEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec
Q 006424          290 VLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD  367 (645)
Q Consensus       290 V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  367 (645)
                      ..+..|+++ + .+++...++.|..||..+++.. .+.....+.+++|+| +++++++. . ..|.+||..+++...+..
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeC-CCeEEEEE-C-CCEEEEECCCCcEEEEee
Confidence            456789986 4 5666667899999999887653 344566899999999 88776654 4 459999998887665433


Q ss_pred             c-----CCCeEEEEEccCCCEEEEEec------CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          368 V-----RDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       368 ~-----~~~v~~l~~sp~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      .     ...++.+.++|+|+++++...      .+.|..++  +...  ..+. ..     ......++|+|+|..++++
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~--~~~~-~~-----~~~~~~i~~s~dg~~lyv~  196 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV--TKLF-AD-----ISIPNSICFSPDGTTGYFV  196 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE--EEEE-EE-----ESSEEEEEECTTSCEEEEE
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE--EEee-CC-----CcccCCeEEcCCCCEEEEE
Confidence            2     235889999999986655432      24455555  3322  1111 11     1346789999998444455


Q ss_pred             EECCCeEEEEECC--cc-e----eeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceee
Q 006424          437 TSEDSKLRILDGV--DV-I----HKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  508 (645)
Q Consensus       437 ~s~dg~I~iwd~~--~~-~----~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  508 (645)
                      .+.++.|.+||..  .. .    ..+.. ........+++++++|.+.++...++.|.+||.. ++...         ..
T Consensus       197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~---------~i  266 (326)
T 2ghs_A          197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIA---------RY  266 (326)
T ss_dssp             ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEE---------EE
T ss_pred             ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEE---------EE
Confidence            5667899999964  22 1    12221 1123456889999999988877777899999974 32110         00


Q ss_pred             eeecCCcEEEEecC-CCCccccccC
Q 006424          509 HFFSEGVSVAVQWP-GIGTEQKSLC  532 (645)
Q Consensus       509 ~~~~~g~~~~v~~s-~~~~~l~~~~  532 (645)
                       -.+...+.+++|+ +++..|+...
T Consensus       267 -~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          267 -EVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             -ECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             -ECCCCCcEEEEEecCCCCEEEEEe
Confidence             1123456788887 7777776443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.11  E-value=1.1e-08  Score=105.52  Aligned_cols=249  Identities=9%  Similarity=0.050  Sum_probs=156.8

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          205 TLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       205 ~l~fspdg~~L~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      .+.++|||++|+.+.          .++.|.++|..+.........+.                                
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g--------------------------------  169 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD--------------------------------  169 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT--------------------------------
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC--------------------------------
Confidence            799999999887775          46789999998854322111000                                


Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC-eEEEEeC--CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCc
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK  351 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~  351 (645)
                        ..   .+ ........+.++|++ +++.+..  ++.|.+.|+.+++.+..+.....   ....|.....+++.+.||.
T Consensus       170 --~~---r~-~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~  240 (426)
T 3c75_H          170 --AP---RF-LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGS  240 (426)
T ss_dssp             --CC---CC-CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSS
T ss_pred             --cc---cc-ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCC
Confidence              00   00 001223467899998 7777664  57899999999999988865442   2344423466777788899


Q ss_pred             EEEEeCCCCcEEEe----ec-cCCC-eEEEEEccCCCEEEEEecCCeEEEEEecCCceeee-EEeeccc-cc---cCCCC
Q 006424          352 VRIWGVCEKRVVDW----AD-VRDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDR-KK---TSGNK  420 (645)
Q Consensus       352 i~vwd~~~~~~~~~----~~-~~~~-v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~-~~---~~~~~  420 (645)
                      +.+.+..+++....    .. ...+ ...+.|.+++..++..+..+.+.+.|..+...... .+..... ..   .....
T Consensus       241 ~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g  320 (426)
T 3c75_H          241 LARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGG  320 (426)
T ss_dssp             EEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECS
T ss_pred             EEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCC
Confidence            88888866655421    11 1111 12356789999888888899999999976543221 1111100 00   00111


Q ss_pred             eEEEEEcCCCCcEEEEEE---------CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-EEEEEe-CCccEEEEe
Q 006424          421 ITGIQFSRDESQRIMITS---------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVYVWN  489 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s---------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~t~s-~dg~I~iwd  489 (645)
                      ...+.++|++...+++..         .++.|.++|..+....-... -.....++.|+|||+ +++++. .++.|.++|
T Consensus       321 ~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~-vg~~P~gia~spDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          321 WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE-LGHEIDSINVSQDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             ceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE-CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence            223689999744444433         24589999987543322221 112478999999999 888887 589999999


Q ss_pred             CCCCCc
Q 006424          490 YDELCF  495 (645)
Q Consensus       490 ~~~~~~  495 (645)
                      +.+.+.
T Consensus       400 ~~t~kv  405 (426)
T 3c75_H          400 AATGEE  405 (426)
T ss_dssp             TTTCCE
T ss_pred             CCCCCE
Confidence            998853

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.09  E-value=2.2e-08  Score=99.76  Aligned_cols=230  Identities=13%  Similarity=0.086  Sum_probs=147.4

Q ss_pred             CCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      ..+..+..+........|++++  .+++...++.|..|+. +++......+...+..+++++ +++++++...++.|.+|
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRS  112 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred             CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEE
Confidence            3455566566677889999886  4667778899999998 455433334566789999999 88877666566789999


Q ss_pred             eCCCCcEEEeecc-----CCCeEEEEEccCCCEEEE----Eec-------------CCeEEEEEecCCceeeeEEeeccc
Q 006424          356 GVCEKRVVDWADV-----RDVISAICYIPDGKGFIV----GSI-------------TGTCHFYKASGNDLKLEKVDFHDR  413 (645)
Q Consensus       356 d~~~~~~~~~~~~-----~~~v~~l~~sp~g~~l~~----g~~-------------dg~i~iwd~~~~~~~~~~~~~~~~  413 (645)
                      +.. ++...+...     ...++.+.++|+|++.++    |..             .+.|..||..+.......    . 
T Consensus       113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----~-  186 (305)
T 3dr2_A          113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----D-  186 (305)
T ss_dssp             CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----E-
T ss_pred             CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----c-
Confidence            986 554443221     234678999999997775    332             245667776555433221    1 


Q ss_pred             cccCCCCeEEEEEcCCCCcEEEEEECC------CeEEEEECCcce----eeEeecCCCCCeEEEEEecCCCEEEEEeCCc
Q 006424          414 KKTSGNKITGIQFSRDESQRIMITSED------SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDC  483 (645)
Q Consensus       414 ~~~~~~~i~~i~~s~~g~~~l~~~s~d------g~I~iwd~~~~~----~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg  483 (645)
                          ......++|+|++ ..|+.+...      +.|++|+.....    ..+.. ...+....++++++|++.++ +.+|
T Consensus       187 ----~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lwv~-~~~g  259 (305)
T 3dr2_A          187 ----LDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLWSS-SGTG  259 (305)
T ss_dssp             ----ESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEEEC-CSSE
T ss_pred             ----CCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEEEe-cCCc
Confidence                1356789999998 566666554      789999965321    11111 12344567899999995554 4454


Q ss_pred             cEEEEeCCCCCcCCCcccCCcceeeeee-cCCcEEEEecCCCCccccccCCCCc
Q 006424          484 RVYVWNYDELCFPSSKQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSSSL  536 (645)
Q Consensus       484 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~v~~s~~~~~l~~~~~~~~  536 (645)
                       |.+|+.+... .           ..+. +. .+..++|++++..|+....+.+
T Consensus       260 -v~~~~~~g~~-~-----------~~~~~~~-~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          260 -VCVFDSDGQL-L-----------GHIPTPG-TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             -EEEECTTSCE-E-----------EEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred             -EEEECCCCCE-E-----------EEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence             9999875331 1           0111 22 2456777788888886665433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.03  E-value=1.5e-08  Score=113.19  Aligned_cols=196  Identities=13%  Similarity=0.103  Sum_probs=126.4

Q ss_pred             cCccCeEEEEEcCCC-eEE-EEeC----CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC--------
Q 006424          285 GHKGDVLDLAWSNSN-YLL-SCSM----DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--------  350 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~-~l~-s~s~----dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg--------  350 (645)
                      +|...+..++||||| +|+ +.+.    +..|++||+.+++.+...-.......++|+  |++.|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL--GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE--TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe--CCCEEEEEEecCcccccccc
Confidence            355678899999998 555 3322    357999999999876542111113567898  677788777764        


Q ss_pred             -----cEEEEeCCCCc----EEE-eec-cCCCeEEEEEccCCCEEEEEec----CCeEEEEEecCCceeeeEEeeccccc
Q 006424          351 -----KVRIWGVCEKR----VVD-WAD-VRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKK  415 (645)
Q Consensus       351 -----~i~vwd~~~~~----~~~-~~~-~~~~v~~l~~sp~g~~l~~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~~  415 (645)
                           .|++|++.++.    ++. ... +.....++.|+|||++|+....    .+.++++|+.+.......+....   
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~---  280 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL---  280 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS---
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC---
Confidence                 39999987754    222 122 3445788999999998876543    24899999876643333322221   


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEECC---CeEEEEECCcce----eeEeecCCCCCeEEEEEecCCCEEEEEeCC-c--cE
Q 006424          416 TSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDD-C--RV  485 (645)
Q Consensus       416 ~~~~~i~~i~~s~~g~~~l~~~s~d---g~I~iwd~~~~~----~~~~~~~~~~~i~~v~~sp~~~~l~t~s~d-g--~I  485 (645)
                         ...... ++++|..+++.+..+   +.|..+|+....    ..+..  +...+.  .|++++++|+....+ +  .|
T Consensus       281 ---~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~~~l  352 (693)
T 3iuj_A          281 ---DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDATARV  352 (693)
T ss_dssp             ---SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred             ---CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence               233333 666665666666554   689999976432    23333  334444  889999988777654 3  78


Q ss_pred             EEEeCCCC
Q 006424          486 YVWNYDEL  493 (645)
Q Consensus       486 ~iwd~~~~  493 (645)
                      ++|+++++
T Consensus       353 ~~~d~~g~  360 (693)
T 3iuj_A          353 EQFDYEGK  360 (693)
T ss_dssp             EEECTTSC
T ss_pred             EEEECCCC
Confidence            99998754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.03  E-value=8.3e-08  Score=97.82  Aligned_cols=189  Identities=10%  Similarity=0.121  Sum_probs=125.2

Q ss_pred             eEEEEEcCCCeEEEEeCC------CcEEEEecCCCeEEEEecCC----CcEEEEEEeeCCCCEEEEEe------------
Q 006424          290 VLDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFDHH----NYVTCVQFNPIDDNYFISGS------------  347 (645)
Q Consensus       290 V~~l~~s~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~----~~v~~l~~~p~~~~~l~s~s------------  347 (645)
                      -..+...|++.++++..+      +.|.+.|.++++.+......    ..-..+.|+| +++.+++..            
T Consensus       140 Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~  218 (462)
T 2ece_A          140 LHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLK  218 (462)
T ss_dssp             EEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCC
T ss_pred             ccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccc
Confidence            345666788866665555      78999999999999888522    2234578899 888888874            


Q ss_pred             -------CCCcEEEEeCCCCcEEEeeccC---CCeEEEEE--ccCCCEEEEEec------CCeEEEEEecCCceeeeE-E
Q 006424          348 -------IDGKVRIWGVCEKRVVDWADVR---DVISAICY--IPDGKGFIVGSI------TGTCHFYKASGNDLKLEK-V  408 (645)
Q Consensus       348 -------~dg~i~vwd~~~~~~~~~~~~~---~~v~~l~~--sp~g~~l~~g~~------dg~i~iwd~~~~~~~~~~-~  408 (645)
                             .+.+|.+||+.+++........   .....+.|  +|+++++++++.      +++|.+|....+...... +
T Consensus       219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI  298 (462)
T 2ece_A          219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI  298 (462)
T ss_dssp             TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence                   3689999999988776644443   34555656  999999888875      568888777654332221 1


Q ss_pred             eeccccc------------cCCCCeEEEEEcCCCCcEEEEEE-CCCeEEEEECCcc-----eeeEeecCC----------
Q 006424          409 DFHDRKK------------TSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVDV-----IHKFKGLPK----------  460 (645)
Q Consensus       409 ~~~~~~~------------~~~~~i~~i~~s~~g~~~l~~~s-~dg~I~iwd~~~~-----~~~~~~~~~----------  460 (645)
                      .......            ........|.+++|| ++|+++. ..+.|.+||+...     .........          
T Consensus       299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG-rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~  377 (462)
T 2ece_A          299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD-KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH  377 (462)
T ss_dssp             EECCEECCSSCCGGGGGGTEECCCCCCEEECTTS-CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred             eCCCccccccccccccccccCCCceeEEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence            1111000            002457889999998 5555554 4689999997521     111111100          


Q ss_pred             --CCCeEEEEEecCCCEEEEEe
Q 006424          461 --SGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       461 --~~~i~~v~~sp~~~~l~t~s  480 (645)
                        .+....+.++|||++|+++.
T Consensus       378 ~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          378 KLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCSCCCCEEECTTSSEEEEEC
T ss_pred             cCCCCCCEEEEcCCCCEEEEEc
Confidence              11357899999999999987

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.99  E-value=4.3e-08  Score=101.17  Aligned_cols=222  Identities=13%  Similarity=0.075  Sum_probs=136.6

Q ss_pred             EEEEcCCC-eEEEEe----------CCCcEEEEecCCCeEEEEecCC--------CcEEEEEEeeCCCCEEEEEeC--CC
Q 006424          292 DLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGSI--DG  350 (645)
Q Consensus       292 ~l~~s~~~-~l~s~s----------~dg~I~iwd~~~~~~~~~~~~~--------~~v~~l~~~p~~~~~l~s~s~--dg  350 (645)
                      .+.++|++ +++.+.          .++.|.++|..+++.+..+...        .....+.|+| ++++++++..  ++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~  200 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP  200 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence            79999997 555554          4679999999999988876432        3456789999 9999998874  57


Q ss_pred             cEEEEeCCCCcEEEeeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC-eEEEEEcC
Q 006424          351 KVRIWGVCEKRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK-ITGIQFSR  428 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~s~  428 (645)
                      .|.+.|+.+.+.+........   ....|++ +.+++.+.||.+.+.+........ ...  ........+ ...+.+.+
T Consensus       201 ~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~-~~~--~~~~v~~~p~~~~~~~~~  274 (426)
T 3c75_H          201 AVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKV-TNT--EVFHTEDELLINHPAFSL  274 (426)
T ss_dssp             EEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEE-EEC--CCCSCTTSCBCSCCEECT
T ss_pred             eEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEE-Eee--eeeccCCCceeeEeeecC
Confidence            899999999988765444332   2334443 455666778888888874443321 110  000000111 12356788


Q ss_pred             CCCcEEEEEECCCeEEEEECCcce----eeEeecC--------CCCCeEEEEEecCCCEEEEEeC----------CccEE
Q 006424          429 DESQRIMITSEDSKLRILDGVDVI----HKFKGLP--------KSGSQMSASFTTTGKHIISIGD----------DCRVY  486 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~--------~~~~i~~v~~sp~~~~l~t~s~----------dg~I~  486 (645)
                      ++ ..++..+..+.|.+.|.....    ..+....        .......++++|+++++++...          ++.|.
T Consensus       275 dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs  353 (426)
T 3c75_H          275 RS-GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV  353 (426)
T ss_dssp             TT-CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred             CC-CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence            87 455555678999999975321    1111100        0111223689999988777642          35799


Q ss_pred             EEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCc-cccccC
Q 006424          487 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT-EQKSLC  532 (645)
Q Consensus       487 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~-~l~~~~  532 (645)
                      +.|..+.+........           +....++++||+. .++...
T Consensus       354 VID~~T~kvv~~I~vg-----------~~P~gia~spDg~~~lyv~n  389 (426)
T 3c75_H          354 VLNAETGERINKIELG-----------HEIDSINVSQDAEPLLYALS  389 (426)
T ss_dssp             EEETTTCCEEEEEEEE-----------EEECEEEECCSSSCEEEEEE
T ss_pred             EEECCCCeEEEEEECC-----------CCcCeEEEccCCCEEEEEEc
Confidence            9999887533222111           1244666777776 555444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.96  E-value=2.5e-07  Score=95.00  Aligned_cols=185  Identities=12%  Similarity=0.026  Sum_probs=117.4

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEE-EEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCe----
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI----  372 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~-l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v----  372 (645)
                      ++.++.++.++.|..+|..+|+.+..+.....+.+ ...   .+..+++++.++.|..+|..+++..........+    
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            56888899999999999999998877654333222 222   2457888888999999999998876544333222    


Q ss_pred             --EEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC-CCC---e-EEEEEcCCCCcEEEEEECCCeEEE
Q 006424          373 --SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNK---I-TGIQFSRDESQRIMITSEDSKLRI  445 (645)
Q Consensus       373 --~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~---i-~~i~~s~~g~~~l~~~s~dg~I~i  445 (645)
                        .....  .+..+++++.+|.+..+|..+++..... ......... ...   + ...... +  ..+++++.++.+..
T Consensus       180 ~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~p~~~-~--~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          180 GESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQ-RISQATGSTEIDRLSDVDTTPVVV-N--GVVFALAYNGNLTA  253 (376)
T ss_dssp             CCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEE-ECCC-----------CCCCCCEEE-T--TEEEEECTTSCEEE
T ss_pred             CCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEE-ecccCCCCcccccccccCCCcEEE-C--CEEEEEecCcEEEE
Confidence              11222  2457888888999999999877654331 111100000 000   0 001111 2  46788888999999


Q ss_pred             EECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424          446 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  495 (645)
Q Consensus       446 wd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~  495 (645)
                      +|..+........  ......+..  ++..++.++.++.|+.+|..+++.
T Consensus       254 ~d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~  299 (376)
T 3q7m_A          254 LDLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT  299 (376)
T ss_dssp             EETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE
T ss_pred             EECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence            9987655444432  223444443  467888888899999999988743

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.89  E-value=1.7e-08  Score=102.47  Aligned_cols=244  Identities=6%  Similarity=-0.081  Sum_probs=145.0

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCC
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  262 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (645)
                      ..++..-..+  .+.|+|||++++.+.          .++.|.+||..++...                           
T Consensus        59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv---------------------------  109 (368)
T 1mda_H           59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI---------------------------  109 (368)
T ss_dssp             EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE---------------------------
T ss_pred             EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE---------------------------
Confidence            3344333345  799999999888876          3688999999985432                           


Q ss_pred             cceeecCCCceeccCCCceeeccC-------ccCeEEEEEcCCC-eEEEEeC--CCcEEE--EecCCCeEEEEecCCCcE
Q 006424          263 HVPVVIPDEVFQIEESPLQELHGH-------KGDVLDLAWSNSN-YLLSCSM--DKTVRM--WQVGCNQCLNVFDHHNYV  330 (645)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~l~~s~~~-~l~s~s~--dg~I~i--wd~~~~~~~~~~~~~~~v  330 (645)
                                        ..+..+       ......++++|+| +++.+..  +..|.+  +|..+   +..+..... 
T Consensus       110 ------------------~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-  167 (368)
T 1mda_H          110 ------------------ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-  167 (368)
T ss_dssp             ------------------EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-
T ss_pred             ------------------EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-
Confidence                              232211       1234568999998 7777664  467888  99876   444432221 


Q ss_pred             EEEEEeeCCCCEEEEEeCCCcEEEEeCCC-----CcEEE-----eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecC
Q 006424          331 TCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KRVVD-----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG  400 (645)
Q Consensus       331 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-----~~~~~-----~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~  400 (645)
                        ..+.|.....+++.+.|+.+.+.|+.+     ++...     +.-...+.   . .+++..++..+. +.+.+.|..+
T Consensus       168 --~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~  240 (368)
T 1mda_H          168 --FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPA  240 (368)
T ss_dssp             --CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCS
T ss_pred             --eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCC
Confidence              223452345666777889988889876     43321     11112222   3 566666666666 9999999865


Q ss_pred             Cceee-eEEeeccc----cccCCCCeEEEEEcCCCCcEEEEEE---C-----CCeEEEEECCcceeeEeecCCCCCeEEE
Q 006424          401 NDLKL-EKVDFHDR----KKTSGNKITGIQFSRDESQRIMITS---E-----DSKLRILDGVDVIHKFKGLPKSGSQMSA  467 (645)
Q Consensus       401 ~~~~~-~~~~~~~~----~~~~~~~i~~i~~s~~g~~~l~~~s---~-----dg~I~iwd~~~~~~~~~~~~~~~~i~~v  467 (645)
                      ..... ..+.+...    ..........+.++|++..++++..   .     ++.+.++|..+....-... -.....++
T Consensus       241 ~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~-vg~~p~gi  319 (368)
T 1mda_H          241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAI  319 (368)
T ss_dssp             SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEE
T ss_pred             CcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE-CCCCcceE
Confidence            43211 11111100    0000011222689999844444444   2     3456699987543222221 11257899


Q ss_pred             EEecCCC-EEEEEe-CCccEEEEeCCCCCc
Q 006424          468 SFTTTGK-HIISIG-DDCRVYVWNYDELCF  495 (645)
Q Consensus       468 ~~sp~~~-~l~t~s-~dg~I~iwd~~~~~~  495 (645)
                      +|+|||+ .+++.. .++.|.++|+.+.+.
T Consensus       320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          320 IAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             EECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence            9999998 456666 599999999998853

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.79  E-value=4.7e-07  Score=95.64  Aligned_cols=187  Identities=13%  Similarity=0.117  Sum_probs=128.1

Q ss_pred             CC-eEE-EEeCCCcEEEEecCCCeEEEEe--cCCCcEEEEEE-e-eCCCCEEEEEe------------------CCCcEE
Q 006424          298 SN-YLL-SCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQF-N-PIDDNYFISGS------------------IDGKVR  353 (645)
Q Consensus       298 ~~-~l~-s~s~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~~-~-p~~~~~l~s~s------------------~dg~i~  353 (645)
                      || +++ +...++.|.+.|+.+.++...+  ........+++ . | +++++++++                  .++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEE
Confidence            55 444 4445667999999999988844  34456888888 4 7 888888885                  245799


Q ss_pred             EEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC--------------------------------------eEEE
Q 006424          354 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--------------------------------------TCHF  395 (645)
Q Consensus       354 vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg--------------------------------------~i~i  395 (645)
                      +.|..+.++.......+....++++|+|+++++.+.+.                                      .|.+
T Consensus       179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            99999988776555444567788999999999988553                                      2444


Q ss_pred             EEecC--CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce-----------eeEeecCCCC
Q 006424          396 YKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-----------HKFKGLPKSG  462 (645)
Q Consensus       396 wd~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~-----------~~~~~~~~~~  462 (645)
                      .|..+  .......+...       ....++.++|||...++++..+.+|.++|..+..           .......-..
T Consensus       259 ID~~~~~~~~~~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~  331 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL  331 (595)
T ss_dssp             EECSGGGCCSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred             EeCcccCCceeEEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence            55444  11111122211       3456789999995556666678999999987432           1111222345


Q ss_pred             CeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          463 SQMSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       463 ~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      ....++|+|+|...++.-.|+.|.+||++.
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            678999999994444555799999999976

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.79  E-value=1.5e-06  Score=87.96  Aligned_cols=202  Identities=6%  Similarity=0.005  Sum_probs=126.8

Q ss_pred             cCeEEEEEcCCC-eEEEEe--CCCcEEEEecCCCeEEEEe--------cCCCcEEEEEEeeCCCCEEEEEeC-----CCc
Q 006424          288 GDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVF--------DHHNYVTCVQFNPIDDNYFISGSI-----DGK  351 (645)
Q Consensus       288 ~~V~~l~~s~~~-~l~s~s--~dg~I~iwd~~~~~~~~~~--------~~~~~v~~l~~~p~~~~~l~s~s~-----dg~  351 (645)
                      ..+..+++++++ .+++..  .++.++||.+.+++.. .+        .+-..+.++++++ +++++++-..     ++.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCCe
Confidence            678999999998 445543  2343566665556533 22        1345789999999 7776665433     578


Q ss_pred             EEEEeCCCCcEEEeecc-------CCCeEEEEEccCCCEEEEEe----cCCeEEEEEecCCceeeeEEee----------
Q 006424          352 VRIWGVCEKRVVDWADV-------RDVISAICYIPDGKGFIVGS----ITGTCHFYKASGNDLKLEKVDF----------  410 (645)
Q Consensus       352 i~vwd~~~~~~~~~~~~-------~~~v~~l~~sp~g~~l~~g~----~dg~i~iwd~~~~~~~~~~~~~----------  410 (645)
                      |.+||+.++++......       ...+..+++++++..++++.    .++.|.+||+.+..... ....          
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r-~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR-VLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE-ECTTCTTTSCCSCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE-EecCCCcccccccc
Confidence            99999998885543221       23568999998765555543    57899999987654321 1100          


Q ss_pred             ---ccccc----c------CCCCeEEEEEcCCCCcEEEEEECCC-eEEEEECCcc----------eeeEeecCCCCCeEE
Q 006424          411 ---HDRKK----T------SGNKITGIQFSRDESQRIMITSEDS-KLRILDGVDV----------IHKFKGLPKSGSQMS  466 (645)
Q Consensus       411 ---~~~~~----~------~~~~i~~i~~s~~g~~~l~~~s~dg-~I~iwd~~~~----------~~~~~~~~~~~~i~~  466 (645)
                         .+...    .      ....+..++|+|+| ..|+.+..++ .+..++....          ...+....+......
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg  252 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG  252 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred             eeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence               00000    0      01246889999998 6666666554 6666653210          001111112335567


Q ss_pred             EEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          467 ASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       467 v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ++++++|.++++...++.|.+||..++
T Consensus       253 ia~d~~G~l~va~~~~~~V~~~d~~~G  279 (343)
T 2qe8_A          253 ISIDKDHNIYVGDLAHSAIGVITSADR  279 (343)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred             EEECCCCCEEEEccCCCeEEEEECCCC
Confidence            999999999999989999999998444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.77  E-value=1.1e-05  Score=78.27  Aligned_cols=197  Identities=7%  Similarity=-0.041  Sum_probs=125.2

Q ss_pred             cCeEEEEEcCC-CeEE-EEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEeCCCCcEE
Q 006424          288 GDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVV  363 (645)
Q Consensus       288 ~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l-~s~s~dg~i~vwd~~~~~~~  363 (645)
                      ..+..++|+++ +.|+ +-..++.|..++...+....... .......++++| ++..+ ++-...+.|.++++......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~  114 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH-LGRTIFWTDSQLDRIEVAKMDGTQRR  114 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEe-cCCeEEEEECCCCEEEEEEcCCCCEE
Confidence            45778999985 5555 55557899999997665433333 224678999998 55544 44455678999998765433


Q ss_pred             Eeecc-CCCeEEEEEccCCCEEEEEec---CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424          364 DWADV-RDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  439 (645)
Q Consensus       364 ~~~~~-~~~v~~l~~sp~g~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~  439 (645)
                      .+... ......++++|++..|+.+..   .+.|..+++.......  + ...    .......+++++++..++++-..
T Consensus       115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~--~-~~~----~~~~P~gia~d~~~~~lyv~d~~  187 (267)
T 1npe_A          115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI--L-AQD----NLGLPNGLTFDAFSSQLCWVDAG  187 (267)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE--E-ECT----TCSCEEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE--E-EEC----CCCCCcEEEEcCCCCEEEEEECC
Confidence            33222 256789999997776666654   3688888876543211  1 111    12457889999986455566666


Q ss_pred             CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          440 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       440 dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      .+.|.++|........... ......+++.. .+..+++....+.|.++|..+++
T Consensus       188 ~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~  240 (267)
T 1npe_A          188 THRAECLNPAQPGRRKVLE-GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISK  240 (267)
T ss_dssp             TTEEEEEETTEEEEEEEEE-CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred             CCEEEEEecCCCceEEEec-CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCC
Confidence            7899999976322211111 22345677664 34444444456899999988764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.74  E-value=3.2e-06  Score=84.71  Aligned_cols=257  Identities=13%  Similarity=0.063  Sum_probs=149.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      .-.+++++++|+++.++..++.|..|+..+...........  ....                        ....+....
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~------------------------~~~~g~~~~   73 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASP--YWNK------------------------AFCENSTDA   73 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCT--TCCH------------------------HHHTTCCCG
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccc--cccc------------------------cccccccch
Confidence            35678899999978888889999999876532211100000  0000                        000000000


Q ss_pred             eeccCccCeEEEEEcC-CCeEEEEeCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeC-------
Q 006424          282 ELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI-------  348 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~s~-------  348 (645)
                      ........+..+++.+ ++.|+.+...+.|..+|..++.......     .......+++.+.++++.++-..       
T Consensus        74 ~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~  153 (322)
T 2fp8_A           74 EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRG  153 (322)
T ss_dssp             GGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTC
T ss_pred             hccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccc
Confidence            0001123578899997 7777777766678889887654322211     11346788888634555554322       


Q ss_pred             ----------CCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCcee-eeEEeecccccc
Q 006424          349 ----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLK-LEKVDFHDRKKT  416 (645)
Q Consensus       349 ----------dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~  416 (645)
                                ++.|..||..+++.......-.....++++|+|+.|+++ +..+.|..|++.+.... ...+. ..    
T Consensus       154 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~~----  228 (322)
T 2fp8_A          154 VQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KI----  228 (322)
T ss_dssp             HHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-EC----
T ss_pred             cceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-eC----
Confidence                      367888998777665443333456789999999977766 45689999998753211 11111 11    


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEEC----------CCeEEEEECCc-ceeeEeecCC--CCCeEEEEEecCCCEEEEEeCCc
Q 006424          417 SGNKITGIQFSRDESQRIMITSE----------DSKLRILDGVD-VIHKFKGLPK--SGSQMSASFTTTGKHIISIGDDC  483 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s~----------dg~I~iwd~~~-~~~~~~~~~~--~~~i~~v~~sp~~~~l~t~s~dg  483 (645)
                       .. ...+++.++| .++++...          .+.|..+|... ....+.....  ...+..+++ .++++.++....+
T Consensus       229 -~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~  304 (322)
T 2fp8_A          229 -PN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHG  304 (322)
T ss_dssp             -SS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCS
T ss_pred             -CC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCC
Confidence             13 6789999998 55555443          46788888642 2333333211  234666666 4666666666788


Q ss_pred             cEEEEeCCCC
Q 006424          484 RVYVWNYDEL  493 (645)
Q Consensus       484 ~I~iwd~~~~  493 (645)
                      .|.++++...
T Consensus       305 ~i~~~~~~~~  314 (322)
T 2fp8_A          305 SVGILVYDKK  314 (322)
T ss_dssp             EEEEEEC---
T ss_pred             ceEEEecccc
Confidence            9999997643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.74  E-value=2.8e-06  Score=81.40  Aligned_cols=209  Identities=11%  Similarity=0.039  Sum_probs=136.5

Q ss_pred             cccccccccC--cEEEEEECCCCCEEEEEeC--CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424          192 TSQEIQAHKG--CIWTLKFSPDGRYLASGGE--DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  267 (645)
Q Consensus       192 ~~~~l~~H~~--~V~~l~fspdg~~L~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (645)
                      ..+++ .|..  ....+.|+|++.+.++.+.  ++.|.+.|+.+++......                            
T Consensus        11 vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~----------------------------   61 (266)
T 2iwa_A           11 VLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK----------------------------   61 (266)
T ss_dssp             EEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE----------------------------
T ss_pred             EEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe----------------------------
Confidence            34444 3443  3689999998765555543  6799999999854332111                            


Q ss_pred             cCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCC-CcEEEEEEeeCCCCEEEEE
Q 006424          268 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~s~  346 (645)
                                     +..+ .....+++..+...++.-.++.+.++|..+.+.+..+... ..-  ..+++ +++.++++
T Consensus        62 ---------------l~~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g--~glt~-Dg~~l~vs  122 (266)
T 2iwa_A           62 ---------------MDDS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG--WGLAT-DGKILYGS  122 (266)
T ss_dssp             ---------------CCTT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSC--CEEEE-CSSSEEEE
T ss_pred             ---------------cCCC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCe--EEEEE-CCCEEEEE
Confidence                           1111 1122455554334455567899999999999999988644 322  33555 66666666


Q ss_pred             eCCCcEEEEeCCCCcEEEeeccC------CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc-------
Q 006424          347 SIDGKVRIWGVCEKRVVDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------  413 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~~~~~~------~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-------  413 (645)
                      ..++.|.++|..+.+........      ..++.+.|. +|...+....++.|.+.|..+.+. ...+.+.+.       
T Consensus       123 ~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~~~~  200 (266)
T 2iwa_A          123 DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL-LGWILLPNLRKKLIDE  200 (266)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE-EEEEECCCcccccccc
Confidence            67889999999997766533221      236788887 675444444678999999998876 344444321       


Q ss_pred             cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424          414 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  450 (645)
Q Consensus       414 ~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~  450 (645)
                      ..........++|+|++..+++++...+.+.+.++..
T Consensus       201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            0111246689999999877777887889999888653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.73  E-value=1.3e-05  Score=90.93  Aligned_cols=239  Identities=10%  Similarity=0.146  Sum_probs=157.3

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCcee
Q 006424          203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE  282 (645)
Q Consensus       203 V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (645)
                      |.++...++|.+.+ |+.++-+..|+..+.....                                           .. 
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~-------------------------------------------~~-  209 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEK-------------------------------------------VI-  209 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEE-------------------------------------------CC-
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEE-------------------------------------------ec-
Confidence            88898888886555 5554448888876532110                                           00 


Q ss_pred             eccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec--------CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          283 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       283 l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--------~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      ...+...|.++...+++.+..|+.++-+..||..+++......        ....|.++...+ ++.+. .|+.+ -|.+
T Consensus       210 ~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lW-igt~~-Gl~~  286 (795)
T 4a2l_A          210 PILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLW-IGTFN-DLNI  286 (795)
T ss_dssp             ----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEE-EEESS-CEEE
T ss_pred             CCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEE-EEeCC-hhhe
Confidence            0012456888888777877777766669999988776544321        135699998887 66654 45555 5899


Q ss_pred             EeCCCCcEEEeec--------cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecc-ccccCCCCeEEEE
Q 006424          355 WGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-RKKTSGNKITGIQ  425 (645)
Q Consensus       355 wd~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~i~~i~  425 (645)
                      ||..++....+..        ....|.++...++|. +.+|+.++-|..|+........  ..... ........|.++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~--~~~~~~~~~l~~~~V~~i~  363 (795)
T 4a2l_A          287 YHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN--IRNIPYKNSLSDNVVSCIV  363 (795)
T ss_dssp             EETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE--ECCCTTSSSCSCSSEEEEE
T ss_pred             EcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE--EcCCCCCCCCCCCeeEEEE
Confidence            9988877665432        235699999998886 6678888888889876544321  11110 1111235799999


Q ss_pred             EcCCCCcEEEEEECCCeEEEEECCcc-eeeEeec-------CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          426 FSRDESQRIMITSEDSKLRILDGVDV-IHKFKGL-------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~-------~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      ..++|  .|..|+.++.|..||.... ...+...       .....|.++..+++++.|..|+.++-|.+||..++.
T Consensus       364 ~d~~g--~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          364 EDKDK--NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             ECTTS--CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred             ECCCC--CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence            98886  4667888888999997633 2222211       124578999999999856667777779999988764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.71  E-value=4.6e-08  Score=99.21  Aligned_cols=267  Identities=11%  Similarity=-0.032  Sum_probs=155.0

Q ss_pred             eEEEEeCCC----cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe----------CCCcEEEEeCCCCcEEEe
Q 006424          300 YLLSCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----------IDGKVRIWGVCEKRVVDW  365 (645)
Q Consensus       300 ~l~s~s~dg----~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s----------~dg~i~vwd~~~~~~~~~  365 (645)
                      .+++...++    +|.+.|..+++.+..+.....- .+.++| ++++++++.          .++.|.+||+.+.+....
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~  111 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence            344444444    8889999999999998633333 799999 888888876          368899999999888765


Q ss_pred             eccC--------CCeEEEEEccCCCEEEEEec--CCeEEE--EEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424          366 ADVR--------DVISAICYIPDGKGFIVGSI--TGTCHF--YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  433 (645)
Q Consensus       366 ~~~~--------~~v~~l~~sp~g~~l~~g~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~  433 (645)
                      ....        .....+.++|||++++++..  +..+.+  +|..+    ...+...+      .    ..+.|+|...
T Consensus       112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~------~----~~~~p~g~~~  177 (368)
T 1mda_H          112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSAS------C----FHIHPGAAAT  177 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSS------C----CCCEEEETTE
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCC------c----eEEccCCCeE
Confidence            4322        34678999999999999875  457888  88876    22232211      1    1234555566


Q ss_pred             EEEEECCCeEEEEECCc----ceeeEe-----ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCc
Q 006424          434 IMITSEDSKLRILDGVD----VIHKFK-----GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV  504 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~~----~~~~~~-----~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~  504 (645)
                      +++.+.|+.+.+.|...    ......     ......+.   . ++++..++..+. +.|.+.|+.+............
T Consensus       178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~  252 (368)
T 1mda_H          178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGN  252 (368)
T ss_dssp             EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSS
T ss_pred             EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEec
Confidence            67777788888888654    111110     11122333   3 677777666667 9999999865421110000000


Q ss_pred             ---ceeeeeecCCcEEEEecCCCCccccccCC-C-C--c--cccCccccccccCC--ccCCCCccccCccccCCCCCCcC
Q 006424          505 ---RSCEHFFSEGVSVAVQWPGIGTEQKSLCS-S-S--L--RDCSQKWDNLETAP--WIRDSERFSLGSWFSNDGPCRGS  573 (645)
Q Consensus       505 ---~~~~~~~~~g~~~~v~~s~~~~~l~~~~~-~-~--~--~~~~~~w~~~~~~~--~~~~~~~~~~~~~fs~dg~~l~s  573 (645)
                         .....+.+.+.- .++++|++..++.... . .  +  .....+++......  .+. -+....+++|+|||+.+..
T Consensus       253 ~~~~~~~~~~p~g~~-~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~-vg~~p~gi~~s~Dg~~l~v  330 (368)
T 1mda_H          253 ESGRKADNFRSAGFQ-MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNY  330 (368)
T ss_dssp             CTHHHHTTEEECSSS-CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEE
T ss_pred             cccccccccccCcce-eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE-CCCCcceEEECCCCCEEEE
Confidence               000001111110 0245555555543211 0 0  0  00011223211111  111 1235788999999996655


Q ss_pred             CCC-CCCcCCCCCCccC
Q 006424          574 ATW-PAEKLPLWDVTID  589 (645)
Q Consensus       574 ~s~-~d~~i~iWd~~~~  589 (645)
                      +.. .++.|.++|+.++
T Consensus       331 a~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          331 ANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEETTTTEEEEEESSSC
T ss_pred             EccCCCCeEEEEECCCC
Confidence            554 5889999999987

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.71  E-value=1.5e-06  Score=96.30  Aligned_cols=197  Identities=9%  Similarity=0.027  Sum_probs=128.5

Q ss_pred             CCeEEEEeC------CCcEEEEecCCCeEEEEecCCCc---------------------------------EEEEEEeeC
Q 006424          298 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHHNY---------------------------------VTCVQFNPI  338 (645)
Q Consensus       298 ~~~l~s~s~------dg~I~iwd~~~~~~~~~~~~~~~---------------------------------v~~l~~~p~  338 (645)
                      ++.++.++.      ++.|+.+|..+|+.+..+.....                                 ...++++| 
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-  252 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-  252 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-
Confidence            455555543      68999999999998877642110                                 12467888 


Q ss_pred             CCCEEEEEeCCC-------------------cEEEEeCCCCcEEEeec---cC-------CCeEEEEEccCC---CEEEE
Q 006424          339 DDNYFISGSIDG-------------------KVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDG---KGFIV  386 (645)
Q Consensus       339 ~~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~---~~-------~~v~~l~~sp~g---~~l~~  386 (645)
                      +++.++.++.++                   .|..+|.++++.+-...   +.       .....+....+|   ..+++
T Consensus       253 ~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~  332 (677)
T 1kb0_A          253 ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH  332 (677)
T ss_dssp             TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEE
Confidence            778888877664                   49999999998765322   21       122333444577   68899


Q ss_pred             EecCCeEEEEEecCCceeeeEEeecccc-----ccCCC------------------------CeEEEEEcCCCCcEEEEE
Q 006424          387 GSITGTCHFYKASGNDLKLEKVDFHDRK-----KTSGN------------------------KITGIQFSRDESQRIMIT  437 (645)
Q Consensus       387 g~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~------------------------~i~~i~~s~~g~~~l~~~  437 (645)
                      ++.+|.++++|..+++.... ..+....     ...+.                        .-..++++|++ .++++.
T Consensus       333 ~~~~G~l~~lD~~tG~~l~~-~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~  410 (677)
T 1kb0_A          333 APKNGFFFVLDRTNGKFISA-KNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLP  410 (677)
T ss_dssp             CCTTSEEEEEETTTCCEEEE-EESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEE
T ss_pred             ECCCCEEEEEECCCCCEecc-ccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEe
Confidence            99999999999998876432 1111000     00000                        01256888886 566654


Q ss_pred             EC-------------------------------------------CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC
Q 006424          438 SE-------------------------------------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK  474 (645)
Q Consensus       438 s~-------------------------------------------dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~  474 (645)
                      ..                                           .+.|..||..+........ +..++.+..+..++.
T Consensus       411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~  489 (677)
T 1kb0_A          411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGN  489 (677)
T ss_dssp             EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTT
T ss_pred             ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCC
Confidence            32                                           2789999987655544442 233444555677888


Q ss_pred             EEEEEeCCccEEEEeCCCCCcCCC
Q 006424          475 HIISIGDDCRVYVWNYDELCFPSS  498 (645)
Q Consensus       475 ~l~t~s~dg~I~iwd~~~~~~~~~  498 (645)
                      +++.++.||.+++||..+++....
T Consensus       490 ~v~~g~~dg~l~a~D~~tG~~lw~  513 (677)
T 1kb0_A          490 VVFQGTADGRLVAYHAATGEKLWE  513 (677)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EEEEECCCCcEEEEECCCCceeee
Confidence            999999999999999999975443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.69  E-value=2.4e-06  Score=94.82  Aligned_cols=198  Identities=13%  Similarity=0.077  Sum_probs=126.7

Q ss_pred             CCeEEEEe------CCCcEEEEecCCCeEEEEecCC--C------------------------------cEEEEEEeeCC
Q 006424          298 SNYLLSCS------MDKTVRMWQVGCNQCLNVFDHH--N------------------------------YVTCVQFNPID  339 (645)
Q Consensus       298 ~~~l~s~s------~dg~I~iwd~~~~~~~~~~~~~--~------------------------------~v~~l~~~p~~  339 (645)
                      ++.++.++      .++.|..||..+|+.+-.+...  .                              .-..++++| +
T Consensus       167 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~  245 (689)
T 1yiq_A          167 NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-E  245 (689)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-T
T ss_pred             CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-C
Confidence            45555543      3689999999999987766410  0                              012567888 7


Q ss_pred             CCEEEEEeCCCc-------------------EEEEeCCCCcEEEeec---cC-------CCeEEEEEccCCC---EEEEE
Q 006424          340 DNYFISGSIDGK-------------------VRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---GFIVG  387 (645)
Q Consensus       340 ~~~l~s~s~dg~-------------------i~vwd~~~~~~~~~~~---~~-------~~v~~l~~sp~g~---~l~~g  387 (645)
                      .++++.++.++.                   |..+|.++++.+-...   +.       ..........+|+   .++.+
T Consensus       246 ~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~  325 (689)
T 1yiq_A          246 LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQA  325 (689)
T ss_dssp             TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEE
Confidence            788888887763                   9999999998775322   21       1122223333665   78889


Q ss_pred             ecCCeEEEEEecCCceeeeEEeeccc----------------------cccC-----------CCCeEEEEEcCCCCcEE
Q 006424          388 SITGTCHFYKASGNDLKLEKVDFHDR----------------------KKTS-----------GNKITGIQFSRDESQRI  434 (645)
Q Consensus       388 ~~dg~i~iwd~~~~~~~~~~~~~~~~----------------------~~~~-----------~~~i~~i~~s~~g~~~l  434 (645)
                      +.+|.++++|..+++..... .+...                      ....           ...-..++++|+. .++
T Consensus       326 ~~~G~l~~lD~~tG~~l~~~-~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~  403 (689)
T 1yiq_A          326 PKNGFFYVIDRATGELLSAK-GIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLV  403 (689)
T ss_dssp             CTTSEEEEEETTTCCEEEEE-ESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEE
T ss_pred             CCCCeEEEEECCCCCEeccc-cccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEE
Confidence            99999999999888764211 10000                      0000           0011236788875 466


Q ss_pred             EEEEC---------------------------------------------CCeEEEEECCcceeeEeecCCCCCeEEEEE
Q 006424          435 MITSE---------------------------------------------DSKLRILDGVDVIHKFKGLPKSGSQMSASF  469 (645)
Q Consensus       435 ~~~s~---------------------------------------------dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~  469 (645)
                      ++...                                             +|.|+.||..+.........+ .+.....+
T Consensus       404 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~  482 (689)
T 1yiq_A          404 YIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTL  482 (689)
T ss_dssp             EEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEE
T ss_pred             EEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCccc
Confidence            65422                                             377999998866555444322 23333456


Q ss_pred             ecCCCEEEEEeCCccEEEEeCCCCCcCCCc
Q 006424          470 TTTGKHIISIGDDCRVYVWNYDELCFPSSK  499 (645)
Q Consensus       470 sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~  499 (645)
                      +..+.++++|+.||.++.||.++++..+..
T Consensus       483 ~tagglvf~gt~dg~l~a~D~~tG~~lw~~  512 (689)
T 1yiq_A          483 STAGNLVFEGSADGRVIAYAADTGEKLWEQ  512 (689)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eECCCEEEEECCCCcEEEEECCCCccceee
Confidence            678889999999999999999999765543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.69  E-value=6.8e-09  Score=106.44  Aligned_cols=220  Identities=11%  Similarity=0.026  Sum_probs=113.1

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCe
Q 006424          211 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDV  290 (645)
Q Consensus       211 dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  290 (645)
                      ++..+++++.||.|..||..+++.                                             +..+..  +.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~---------------------------------------------~W~~~~--~~~   40 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSI---------------------------------------------KWTLKE--DPV   40 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCE---------------------------------------------EEEEEC--CCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE---------------------------------------------EEEecC--CCc
Confidence            567899999999999999988543                                             222222  233


Q ss_pred             EEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCC--CcEEE-EEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEee
Q 006424          291 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA  366 (645)
Q Consensus       291 ~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~v~~-l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  366 (645)
                      .+..+..++ .+++++.|+.|+.||..+|+.+..+...  ..+.+ ..+.  .+..+++++.|+.|+.||..+++.....
T Consensus        41 ~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~  118 (369)
T 2hz6_A           41 LQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTL  118 (369)
T ss_dssp             CCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC--------
T ss_pred             eecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEe
Confidence            333333455 6777789999999999988876655422  11111 1111  3456788888999999999998876543


Q ss_pred             ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC--CcEEEEEECCCeEE
Q 006424          367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLR  444 (645)
Q Consensus       367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g--~~~l~~~s~dg~I~  444 (645)
                      ....   ...++|++..+++++.++.|+.||..+++.... .....        .....+.++.  ...+++++.||.|+
T Consensus       119 ~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~-~~~~~--------~~~~~~~~~~~~~~~v~~~~~dg~v~  186 (369)
T 2hz6_A          119 SSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN-ATYFD--------YAASLPEDDVDYKMSHFVSNGDGLVV  186 (369)
T ss_dssp             -----------------EEEEEEEEEEECCCSSSSSCCCE-EEEEE--------ECCBCCCCCTTCCCCEEEEETSCEEE
T ss_pred             cCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEe-Eeccc--------ccCccccCCccccceEEEECCCCEEE
Confidence            3322   234567888999999999999999988765332 11111        1112233321  03577789999999


Q ss_pred             EEECCcceeeEeecCCCCCeEE-EEEecCCCEE----EEEeCCccEEEEeCCCCC
Q 006424          445 ILDGVDVIHKFKGLPKSGSQMS-ASFTTTGKHI----ISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       445 iwd~~~~~~~~~~~~~~~~i~~-v~~sp~~~~l----~t~s~dg~I~iwd~~~~~  494 (645)
                      .||..+........ ...++.. ..++++|...    +.+  ++.++.+|..+++
T Consensus       187 a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~  238 (369)
T 2hz6_A          187 TVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSGE  238 (369)
T ss_dssp             EECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHHH
T ss_pred             EEECCCCcEEEEec-CCCceEEEEEecCCceEeccceeec--ccceeeeehhcCC
Confidence            99987554444432 2344443 3444555432    122  3455556655544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.67  E-value=6.6e-07  Score=94.50  Aligned_cols=199  Identities=11%  Similarity=0.038  Sum_probs=131.0

Q ss_pred             CeEEEEE-c-CCC-eEEEEe------------------CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe
Q 006424          289 DVLDLAW-S-NSN-YLLSCS------------------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS  347 (645)
Q Consensus       289 ~V~~l~~-s-~~~-~l~s~s------------------~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s  347 (645)
                      ....+++ + |++ +++.++                  .++.+.+.|.++.+.+..+.-......++++| +++++++.+
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~  213 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTS  213 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEE
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEe
Confidence            4556666 3 665 666653                  34689999999999888876444567788999 888888887


Q ss_pred             CCC--------------------------------------cEEEEeCCC--CcE-EEeeccCCCeEEEEEccCCCEEEE
Q 006424          348 IDG--------------------------------------KVRIWGVCE--KRV-VDWADVRDVISAICYIPDGKGFIV  386 (645)
Q Consensus       348 ~dg--------------------------------------~i~vwd~~~--~~~-~~~~~~~~~v~~l~~sp~g~~l~~  386 (645)
                      .+.                                      .|.+.|.++  ++. ...........++.++|||+++++
T Consensus       214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V  293 (595)
T 1fwx_A          214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV  293 (595)
T ss_dssp             SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred             cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence            553                                      477777776  333 444444556788999999998887


Q ss_pred             Ee-cCCeEEEEEecCCcee------ee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-------
Q 006424          387 GS-ITGTCHFYKASGNDLK------LE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-------  451 (645)
Q Consensus       387 g~-~dg~i~iwd~~~~~~~------~~-~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-------  451 (645)
                      ++ .+.+|.++|+.+....      .. .+..   ....+.....++|+|+| ..+++.--|++|.+||+...       
T Consensus       294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~---~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~  369 (595)
T 1fwx_A          294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVA---EPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGE  369 (595)
T ss_dssp             ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE---CCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTC
T ss_pred             eCCCCCeEEEEECcccccccccccCcccceEE---EcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccc
Confidence            66 5789999999854210      00 0000   01123567899999998 77777888999999996541       


Q ss_pred             -----eeeEeecCCCCCe-----EEEEEecCCCEEEEEeC---Ccc----------EEEEeCCCCC
Q 006424          452 -----IHKFKGLPKSGSQ-----MSASFTTTGKHIISIGD---DCR----------VYVWNYDELC  494 (645)
Q Consensus       452 -----~~~~~~~~~~~~i-----~~v~~sp~~~~l~t~s~---dg~----------I~iwd~~~~~  494 (645)
                           +..+..  +..+-     .++.++|||++|+++..   |+.          -.++|+.+++
T Consensus       370 ~~~~vi~kidV--~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          370 KVDPIKDKLDV--HYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             SCCCEEEEEEC--SSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             ccceeEEEeec--ccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence                 122222  22211     12245799999998753   332          1778885543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.64  E-value=9.5e-06  Score=77.69  Aligned_cols=206  Identities=9%  Similarity=0.032  Sum_probs=134.3

Q ss_pred             ceeeccCcc--CeEEEEEcCCCeEEEEe-C--CCcEEEEecCCCeEEEEecCCC--cEEEEEEeeCCCCEEEEEeCCCcE
Q 006424          280 LQELHGHKG--DVLDLAWSNSNYLLSCS-M--DKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKV  352 (645)
Q Consensus       280 ~~~l~~h~~--~V~~l~~s~~~~l~s~s-~--dg~I~iwd~~~~~~~~~~~~~~--~v~~l~~~p~~~~~l~s~s~dg~i  352 (645)
                      +.++. |..  ....+.|++++.|+.++ .  ++.|.+.|+.+++.+..+....  ....+++.  .+.+.++.-.++.+
T Consensus        12 v~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v   88 (266)
T 2iwa_A           12 LNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIG   88 (266)
T ss_dssp             EEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEE
T ss_pred             EEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEE
Confidence            34443 443  36799999988655544 2  5899999999999998875333  23345554  23444555567899


Q ss_pred             EEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424          353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       353 ~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                      .++|..+.+.+...... .-....+++||+.++++..++.|.++|..+.+... .+..... ...-...+.+.|. +| .
T Consensus        89 ~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~-~I~Vg~~-~~p~~~~nele~~-dg-~  163 (266)
T 2iwa_A           89 FIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIK-KHNVKYN-GHRVIRLNELEYI-NG-E  163 (266)
T ss_dssp             EEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEE-EEECEET-TEECCCEEEEEEE-TT-E
T ss_pred             EEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEE-EEEECCC-CcccccceeEEEE-CC-E
Confidence            99999998877654333 11224466788888888888999999998776533 3332221 0011246678888 65 5


Q ss_pred             EEEEEECCCeEEEEECCcc--eeeEeec-----------CCCCCeEEEEEecCCCEE-EEEeCCccEEEEeCCCC
Q 006424          433 RIMITSEDSKLRILDGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       433 ~l~~~s~dg~I~iwd~~~~--~~~~~~~-----------~~~~~i~~v~~sp~~~~l-~t~s~dg~I~iwd~~~~  493 (645)
                      .++....++.|.+.|..+.  ...+...           .......+++|+|+++.+ +++...+.+++-++...
T Consensus       164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            5555556899999998743  3333321           112356899999998755 55557788988888654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.62  E-value=7.7e-06  Score=83.79  Aligned_cols=183  Identities=7%  Similarity=-0.002  Sum_probs=118.4

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEE------EEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCC
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT------CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV  371 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~------~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  371 (645)
                      ++.++.++.++.|..+|..+++.+..+.....+.      ....   .+..++.++.++.+..+|..+++.........+
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~  219 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA  219 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence            5688889999999999999999887775443332      2222   245677888899999999998887653332211


Q ss_pred             e-----E---EEEEcc--CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC
Q 006424          372 I-----S---AICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  441 (645)
Q Consensus       372 v-----~---~l~~sp--~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg  441 (645)
                      .     .   .+...|  .+..+++++.+|.+..+|..+++....   ...      .....+...  + ..+++++.++
T Consensus       220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~---~~~------~~~~~~~~~--~-~~l~~~~~~g  287 (376)
T 3q7m_A          220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWK---REL------GSVNDFIVD--G-NRIYLVDQND  287 (376)
T ss_dssp             ----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEE---ECC------CCEEEEEEE--T-TEEEEEETTC
T ss_pred             CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEee---ccC------CCCCCceEE--C-CEEEEEcCCC
Confidence            0     0   011111  356788888899999999987765422   111      223444443  3 4788888999


Q ss_pred             eEEEEECCcceeeEeec-CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424          442 KLRILDGVDVIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  497 (645)
Q Consensus       442 ~I~iwd~~~~~~~~~~~-~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~  497 (645)
                      .|..+|..+........ .....+.....  .+..|+.++.+|.|+++|..+++...
T Consensus       288 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~  342 (376)
T 3q7m_A          288 RVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA  342 (376)
T ss_dssp             CEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             eEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence            99999987655444432 11122222222  35788889999999999999886443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.62  E-value=6.1e-07  Score=99.40  Aligned_cols=193  Identities=14%  Similarity=0.094  Sum_probs=123.9

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCCc------------EEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY------------VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  365 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------------v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~  365 (645)
                      ++.++.++.++.|..+|..+|+.+-.+.....            ...+++   .+..+++++.|+.|..+|..+++.+-.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~v~v~~~dg~l~alD~~tG~~~W~  153 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL---WKGKVYVGAWDGRLIALDAATGKEVWH  153 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence            56888888899999999999999888753211            122333   356788888999999999999887754


Q ss_pred             eccC------CCeEE-EEEccCCCEEEEEec------CCeEEEEEecCCceeeeEEeeccccc-----------------
Q 006424          366 ADVR------DVISA-ICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKK-----------------  415 (645)
Q Consensus       366 ~~~~------~~v~~-l~~sp~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------  415 (645)
                      ....      ..+.+ ...  .+..+++++.      +|.|+.||..+++..... .......                 
T Consensus       154 ~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~-~~~~~~~~~~~~~~~~~~g~~~w~  230 (677)
T 1kb0_A          154 QNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW-FSVPGDPSKPFEDESMKRAARTWD  230 (677)
T ss_dssp             EETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE-ESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred             ecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe-ccCCCCcccccccccccccccccc
Confidence            3322      11211 111  2445666554      689999999988764332 2111100                 


Q ss_pred             ---------cCCCCeEEEEEcCCCCcEEEEEECCC-------------------eEEEEECCcceeeEee--cCCC----
Q 006424          416 ---------TSGNKITGIQFSRDESQRIMITSEDS-------------------KLRILDGVDVIHKFKG--LPKS----  461 (645)
Q Consensus       416 ---------~~~~~i~~i~~s~~g~~~l~~~s~dg-------------------~I~iwd~~~~~~~~~~--~~~~----  461 (645)
                               ........++++|++ ..++.++.++                   .|..+|..+.......  ..+.    
T Consensus       231 ~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~  309 (677)
T 1kb0_A          231 PSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY  309 (677)
T ss_dssp             GGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred             ccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence                     011122357888886 6777777664                   4888887755444332  2121    


Q ss_pred             ---CCeEEEEEecCC---CEEEEEeCCccEEEEeCCCCCcCC
Q 006424          462 ---GSQMSASFTTTG---KHIISIGDDCRVYVWNYDELCFPS  497 (645)
Q Consensus       462 ---~~i~~v~~sp~~---~~l~t~s~dg~I~iwd~~~~~~~~  497 (645)
                         ....-+....+|   +.++.++.+|.++++|..+++...
T Consensus       310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~  351 (677)
T 1kb0_A          310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFIS  351 (677)
T ss_dssp             CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEec
Confidence               223334444577   689999999999999999987543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.62  E-value=1.3e-06  Score=97.05  Aligned_cols=194  Identities=13%  Similarity=0.127  Sum_probs=122.0

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCCc-----------E-EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-----------V-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  365 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~-----------v-~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~  365 (645)
                      ++.++.++.++.|..+|..+|+.+-.+.....           + ..+..   .+..+++++.|+.|+.+|..+++.+-.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~v~v~~~dg~l~AlDa~TG~~~W~  146 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV---WKGKVYVGVLDGRLEAIDAKTGQRAWS  146 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE---ECCEEEEEccCCEEEEEECCCCCEeee
Confidence            56888888899999999999999888753211           0 12233   356788888999999999999987753


Q ss_pred             eccC---CCeEEEEEcc---CCCEEEEEe------cCCeEEEEEecCCceeeeEEeeccccc------------------
Q 006424          366 ADVR---DVISAICYIP---DGKGFIVGS------ITGTCHFYKASGNDLKLEKVDFHDRKK------------------  415 (645)
Q Consensus       366 ~~~~---~~v~~l~~sp---~g~~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~~------------------  415 (645)
                      ....   .....+..+|   ++ .+++++      .+|.|+.||..+++.............                  
T Consensus       147 ~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  225 (689)
T 1yiq_A          147 VDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD  225 (689)
T ss_dssp             EECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred             ecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence            3221   1111111122   44 455554      368999999998876443221110000                  


Q ss_pred             ------cCCCCeEEEEEcCCCCcEEEEEECCCe-------------------EEEEECCcceeeEeec--CCC-------
Q 006424          416 ------TSGNKITGIQFSRDESQRIMITSEDSK-------------------LRILDGVDVIHKFKGL--PKS-------  461 (645)
Q Consensus       416 ------~~~~~i~~i~~s~~g~~~l~~~s~dg~-------------------I~iwd~~~~~~~~~~~--~~~-------  461 (645)
                            ........++++|++ .+++.++.++.                   |..+|..+........  .+.       
T Consensus       226 ~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~  304 (689)
T 1yiq_A          226 AYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT  304 (689)
T ss_dssp             THHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred             eeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence                  011122357888876 68888887764                   9999987655444332  121       


Q ss_pred             CCeEEEEEecCCC---EEEEEeCCccEEEEeCCCCCcC
Q 006424          462 GSQMSASFTTTGK---HIISIGDDCRVYVWNYDELCFP  496 (645)
Q Consensus       462 ~~i~~v~~sp~~~---~l~t~s~dg~I~iwd~~~~~~~  496 (645)
                      ..........+|+   .++.++.+|.++++|..+++..
T Consensus       305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL  342 (689)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence            1222233334665   7889999999999999999754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.60  E-value=6.9e-06  Score=77.63  Aligned_cols=194  Identities=11%  Similarity=0.024  Sum_probs=126.9

Q ss_pred             cccccccccC--cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          192 TSQEIQAHKG--CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       192 ~~~~l~~H~~--~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      ..+++ .|..  -...+.|+ ++.+..+.+.+|.|+++|+.+++..                                  
T Consensus        45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~----------------------------------   88 (268)
T 3nok_A           45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV----------------------------------   88 (268)
T ss_dssp             EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS----------------------------------
T ss_pred             EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE----------------------------------
Confidence            34444 3433  35788887 4677788888999999999985432                                  


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                                 ..+-....---.+++..+...+..-.++.+.+||..+.+.+.++.....-..+++   +++.|+.+..+
T Consensus        89 -----------~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~---Dg~~L~vSdGs  154 (268)
T 3nok_A           89 -----------WMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCY---WNGKLVRSDGG  154 (268)
T ss_dssp             -----------EEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEE---ETTEEEEECSS
T ss_pred             -----------eEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEec---CCCEEEEECCC
Confidence                       2221111111235554444555566789999999999999999975554455554   56777777778


Q ss_pred             CcEEEEeCCCCcEEEeecc---C---CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc-------ccc
Q 006424          350 GKVRIWGVCEKRVVDWADV---R---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------KKT  416 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~~---~---~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~  416 (645)
                      +.|.++|..+.+.......   .   ..++.+.|. +|+..+....++.|.+.|..+++.. ..+.+.+.       ...
T Consensus       155 ~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~-~~Idl~~L~~~~~~~~~~  232 (268)
T 3nok_A          155 TMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV-GVIDASALTRAVAGQVTN  232 (268)
T ss_dssp             SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE-EEEECHHHHHHHTTTCCC
T ss_pred             CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE-EEEECCCCcccccccccC
Confidence            9999999999877653322   1   245667776 7765544446889999999888753 34444321       111


Q ss_pred             CCCCeEEEEEcCCCCcEEEEE
Q 006424          417 SGNKITGIQFSRDESQRIMIT  437 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~  437 (645)
                      .....+.|+++|++..++++|
T Consensus       233 ~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          233 PEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTCCEEEEEECTTTCCEEEEE
T ss_pred             cCCceEEEEEcCCCCEEEEeC
Confidence            235678999999875666655

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.58  E-value=5.4e-09  Score=107.19  Aligned_cols=184  Identities=8%  Similarity=0.023  Sum_probs=101.3

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eecc-CCCeE-E
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADV-RDVIS-A  374 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~-~~~v~-~  374 (645)
                      ++.+++++.|+.|+.||..+|+.+..+.. ..+.+..+.+ ++..+++++.|+.|+.||..+++.+. +..+ ...+. +
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            46899999999999999999999888766 5555555555 66678888899999999998876543 2111 11110 0


Q ss_pred             EEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceee
Q 006424          375 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK  454 (645)
Q Consensus       375 l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~  454 (645)
                      ..+. .+..+++++.++.++.||..+++....   +...     .   ...++|++ ..+++++.|+.|+.||..+....
T Consensus        87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~---~~~~-----~---~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT---LSSA-----F---ADSLSPST-SLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             SCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE---ecCC-----C---cccccccC-CEEEEEecCCEEEEEECCCCCEE
Confidence            1111 345678888999999999988765322   1111     1   13345665 68888999999999997643322


Q ss_pred             EeecCCCCCeEEEEEecCC---CEEEEEeCCccEEEEeCCCCCcCCC
Q 006424          455 FKGLPKSGSQMSASFTTTG---KHIISIGDDCRVYVWNYDELCFPSS  498 (645)
Q Consensus       455 ~~~~~~~~~i~~v~~sp~~---~~l~t~s~dg~I~iwd~~~~~~~~~  498 (645)
                      ......  ......++++.   ..+++++.||.|+.||..+++..+.
T Consensus       154 W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~  198 (369)
T 2hz6_A          154 WNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWI  198 (369)
T ss_dssp             CEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred             EeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEE
Confidence            221100  01122233332   5677788999999999998865443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.57  E-value=1e-05  Score=82.59  Aligned_cols=190  Identities=7%  Similarity=0.026  Sum_probs=124.5

Q ss_pred             CCC--eEEEEeCCCcEEEEecCCC----eEEEEec--------CCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEe
Q 006424          297 NSN--YLLSCSMDKTVRMWQVGCN----QCLNVFD--------HHNYVTCVQFNPIDDNYFISGSID------GKVRIWG  356 (645)
Q Consensus       297 ~~~--~l~s~s~dg~I~iwd~~~~----~~~~~~~--------~~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd  356 (645)
                      .++  .++++..++.|.++|+.+.    +....+.        .......+...| ++ +++++..+      +.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence            555  5667788899999999755    6666662        112456677888 77 77776655      7899999


Q ss_pred             CCCCcEEEeeccC----CCeEEEEEccCCCEEEEEe-------------------cCCeEEEEEecCCceeeeEEeeccc
Q 006424          357 VCEKRVVDWADVR----DVISAICYIPDGKGFIVGS-------------------ITGTCHFYKASGNDLKLEKVDFHDR  413 (645)
Q Consensus       357 ~~~~~~~~~~~~~----~~v~~l~~sp~g~~l~~g~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~  413 (645)
                      ..+.+++......    ..-..+.|+|+++.+++..                   .+.+|.+||+.+.+. ...+.....
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-~~tI~vg~~  249 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-IHSLTLGEE  249 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-EEEEESCTT
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-eeEEecCCC
Confidence            9998877644322    2244588899999888874                   368999999987643 334443210


Q ss_pred             cccCCCCeEEEEE--cCCCCcEEEEEE-----CCCeEEEEECCcc----eeeEeecC----------------CCCCeEE
Q 006424          414 KKTSGNKITGIQF--SRDESQRIMITS-----EDSKLRILDGVDV----IHKFKGLP----------------KSGSQMS  466 (645)
Q Consensus       414 ~~~~~~~i~~i~~--s~~g~~~l~~~s-----~dg~I~iwd~~~~----~~~~~~~~----------------~~~~i~~  466 (645)
                          +.....+.|  +|++...++++-     .+++|.+|.....    .+.+....                .......
T Consensus       250 ----g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          250 ----NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             ----EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             ----CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence                123445555  999844444444     6678877653211    11110000                0245778


Q ss_pred             EEEecCCCEEEEEeC-CccEEEEeCCCC
Q 006424          467 ASFTTTGKHIISIGD-DCRVYVWNYDEL  493 (645)
Q Consensus       467 v~~sp~~~~l~t~s~-dg~I~iwd~~~~  493 (645)
                      +.+|+||++|.++.. .+.|.+||+...
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            999999999988775 689999999643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.57  E-value=6.1e-05  Score=74.61  Aligned_cols=226  Identities=12%  Similarity=0.064  Sum_probs=136.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      .....++|+++|+++++-..++.|..||.....                                              .
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~----------------------------------------------~   65 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ----------------------------------------------Q   65 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE----------------------------------------------E
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce----------------------------------------------E
Confidence            457789999999977777788889888865410                                              1


Q ss_pred             eeeccCccCeEEEEEcCCCeEEEEe--CCC-cEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          281 QELHGHKGDVLDLAWSNSNYLLSCS--MDK-TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~~l~s~s--~dg-~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      ..+ ........+++.+++.++.+.  .++ .|..+|..+++......  .......++..+ ++..+++-..++.|+.+
T Consensus        66 ~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~  143 (306)
T 2p4o_A           66 IHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLI  143 (306)
T ss_dssp             EEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEE
T ss_pred             EEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEE
Confidence            111 112357889999988555444  222 46677777776544332  222334555544 44444544458899999


Q ss_pred             eCCCCc--EEEee---------ccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecC-CceeeeEEeeccccccCCCCeE
Q 006424          356 GVCEKR--VVDWA---------DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG-NDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       356 d~~~~~--~~~~~---------~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      |..++.  +....         ..-...+.+  +|+++.|+++. ..+.|..|++.. ...........      .....
T Consensus       144 d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------~~~P~  215 (306)
T 2p4o_A          144 DVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------QTNID  215 (306)
T ss_dssp             ETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE------SCCCS
T ss_pred             eCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec------cCCCC
Confidence            987643  22111         111234555  78888776665 467899999875 22111111111      12356


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEECCcceeeE-eecCCCCCeEEEEEe---cCCCEEEEEeCCc
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFT---TTGKHIISIGDDC  483 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~i~~v~~s---p~~~~l~t~s~dg  483 (645)
                      .+++.++| +++++....+.|.++|........ .........++++|.   |+++.|+.++..+
T Consensus       216 gi~vd~dG-~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          216 DFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             SEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CeEECCCC-CEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            78999998 677777778899999965322222 122233568999998   8888777766543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.54  E-value=1.4e-05  Score=75.49  Aligned_cols=194  Identities=11%  Similarity=0.103  Sum_probs=123.6

Q ss_pred             ccccccccccC--cEEEEEECCCCCEEEEEeCCC--cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCccee
Q 006424          191 YTSQEIQAHKG--CIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV  266 (645)
Q Consensus       191 ~~~~~l~~H~~--~V~~l~fspdg~~L~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (645)
                      ...+++ .|..  -...+.|+ ++.+..+++.+|  .|+++|+.+++...                              
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~------------------------------   79 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ------------------------------   79 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE------------------------------
T ss_pred             EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE------------------------------
Confidence            344555 3443  34789998 677777777776  89999999854432                              


Q ss_pred             ecCCCceeccCCCceeeccCccCe--EEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEE
Q 006424          267 VIPDEVFQIEESPLQELHGHKGDV--LDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       267 ~~~~~~~~~~~~~~~~l~~h~~~V--~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~  344 (645)
                                     .+.-. ...  -.++...+...+..-.++.+.++|..+.+.+..+.....-..++  + +++.|+
T Consensus        80 ---------------~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~-dg~~L~  140 (262)
T 3nol_A           80 ---------------QIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--H-NDQYLI  140 (262)
T ss_dssp             ---------------EEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--E-CSSCEE
T ss_pred             ---------------EEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--c-CCCEEE
Confidence                           22111 111  22444333344445568999999999999999997554334444  4 666666


Q ss_pred             EEeCCCcEEEEeCCCCcEEEeecc---C---CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc---
Q 006424          345 SGSIDGKVRIWGVCEKRVVDWADV---R---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK---  415 (645)
Q Consensus       345 s~s~dg~i~vwd~~~~~~~~~~~~---~---~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~---  415 (645)
                      .+..++.|.++|..+.+.......   .   ..++.+.|. +|+..+..-.++.|.+.|..+++.. ..+.+.+...   
T Consensus       141 ~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~-~~Id~~~L~~~~~  218 (262)
T 3nol_A          141 MSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT-GIIDLNGILAEAG  218 (262)
T ss_dssp             ECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE-EEEECTTGGGGSC
T ss_pred             EECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE-EEEECCcCccccc
Confidence            666678899999998776653222   1   334567776 6765555556889999999888763 3444432211   


Q ss_pred             ---cCCCCeEEEEEcCCCCcEEEEE
Q 006424          416 ---TSGNKITGIQFSRDESQRIMIT  437 (645)
Q Consensus       416 ---~~~~~i~~i~~s~~g~~~l~~~  437 (645)
                         ......+.|+|+|++..++++|
T Consensus       219 ~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          219 PLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             SCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             cccCcCCceEEEEEcCCCCEEEEEC
Confidence               1234678999999974444444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.53  E-value=7.4e-06  Score=81.95  Aligned_cols=186  Identities=13%  Similarity=0.043  Sum_probs=118.9

Q ss_pred             CeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE-Eee
Q 006424          289 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWA  366 (645)
Q Consensus       289 ~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~  366 (645)
                      .+.++...+++.++.++.++.|..+|.. ++....+. ....+.++...+ ++.++ .++  +.|..+| .+++.. ...
T Consensus       138 ~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~~~~~~  211 (330)
T 3hxj_A          138 IYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PDGTEKWNFY  211 (330)
T ss_dssp             CCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TTSCEEEEEC
T ss_pred             eeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcEEEEEc
Confidence            4455566667788889989999999998 77766654 334566677765 56544 444  8899999 555443 444


Q ss_pred             ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424          367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  446 (645)
Q Consensus       367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw  446 (645)
                      .....+.++...++| .+.+++.++.+..+|..+..  ........      ..+.++...+++  .+.+++.+|.|..+
T Consensus       212 ~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~~g~~--~~~~~~~~------~~~~~~~~~~~g--~l~v~t~~ggl~~~  280 (330)
T 3hxj_A          212 AGYWTVTRPAISEDG-TIYVTSLDGHLYAINPDGTE--KWRFKTGK------RIESSPVIGNTD--TIYFGSYDGHLYAI  280 (330)
T ss_dssp             CSSCCCSCCEECTTS-CEEEEETTTEEEEECTTSCE--EEEEECSS------CCCSCCEECTTS--CEEEECTTCEEEEE
T ss_pred             cCCcceeceEECCCC-eEEEEcCCCeEEEECCCCCE--eEEeeCCC------CccccceEcCCC--eEEEecCCCCEEEE
Confidence            444668888888877 46667778888888743322  22222111      223345556565  67788889899999


Q ss_pred             ECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          447 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       447 d~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      |.. .............+.++..+++|. |..++.+|.+++......
T Consensus       281 d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          281 NPD-GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             CTT-SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred             CCC-CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence            953 222222222345566777777776 556788999999876543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.49  E-value=0.0002  Score=69.24  Aligned_cols=218  Identities=8%  Similarity=-0.044  Sum_probs=131.7

Q ss_pred             CcEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424          201 GCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  279 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (645)
                      ..+..++|++++..|. +-..++.|..++.....                                             .
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---------------------------------------------~   70 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---------------------------------------------P   70 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---------------------------------------------C
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---------------------------------------------c
Confidence            3578999999765554 55567889999886521                                             1


Q ss_pred             ceeeccCccCeEEEEEcCC-CeEE-EEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC---CCcEE
Q 006424          280 LQELHGHKGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI---DGKVR  353 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~---dg~i~  353 (645)
                      ...+.........++++++ +.++ +-...+.|.+++++......... .......++++| ++..|+.+..   .+.|.
T Consensus        71 ~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~  149 (267)
T 1npe_A           71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIE  149 (267)
T ss_dssp             EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEE
T ss_pred             EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEE
Confidence            1111112245678999885 5544 44556889999987433222222 224678999999 6666655554   36888


Q ss_pred             EEeCCCCcEEEee-ccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424          354 IWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       354 vwd~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                      .+++.......+. ..-.....++++|++..|+++. ..+.|..+|..+.... ...  ..     ......++..  +.
T Consensus       150 ~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~--~~-----~~~P~gi~~d--~~  219 (267)
T 1npe_A          150 TSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVL--EG-----LQYPFAVTSY--GK  219 (267)
T ss_dssp             EEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEE--EC-----CCSEEEEEEE--TT
T ss_pred             EEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-EEe--cC-----CCCceEEEEe--CC
Confidence            8888754433322 2334678999999887776665 4578999998753321 111  11     1334566654  32


Q ss_pred             cEEEEEECCCeEEEEECCcceeeEeecCCC-CCeEEEEEecCCC
Q 006424          432 QRIMITSEDSKLRILDGVDVIHKFKGLPKS-GSQMSASFTTTGK  474 (645)
Q Consensus       432 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~-~~i~~v~~sp~~~  474 (645)
                      .++++....+.|..+|.............. ....++++.|++.
T Consensus       220 ~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          220 NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            555555567899999976443322222122 2366778887764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.48  E-value=0.00047  Score=78.06  Aligned_cols=245  Identities=12%  Similarity=0.104  Sum_probs=158.3

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424          200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  279 (645)
Q Consensus       200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (645)
                      ...|.++...++|.+.+. +.+| |.+||..+.........                                    ...
T Consensus       262 ~~~i~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~~~------------------------------------~~~  303 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWIG-TFND-LNIYHEGTDSFASYSSN------------------------------------PVE  303 (795)
T ss_dssp             CSBEEEEEECTTSCEEEE-ESSC-EEEEETTTTEEEEECCC------------------------------------TTS
T ss_pred             CCeEEEEEEcCCCCEEEE-eCCh-hheEcCCCCeEEEEecC------------------------------------CCC
Confidence            356999999888875543 3444 88888765322110000                                    000


Q ss_pred             ceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-------CCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424          280 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNYFISGSIDGKV  352 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-------~~~~v~~l~~~p~~~~~l~s~s~dg~i  352 (645)
                      ..  .-....|.++...++|.|..|+.++-|..|+..++.......       ....|.++...+ +++ |-.|+.++-|
T Consensus       304 ~~--~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl  379 (795)
T 4a2l_A          304 NG--SLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGL  379 (795)
T ss_dssp             TT--SCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCE
T ss_pred             CC--CCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCe
Confidence            00  012457999999888888899998899999976554322211       234689998876 555 5557777789


Q ss_pred             EEEeCCCCcEEEeec---------cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424          353 RIWGVCEKRVVDWAD---------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  423 (645)
Q Consensus       353 ~vwd~~~~~~~~~~~---------~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (645)
                      ..||..++....+..         ....|.++...++|+.|.+|+.++-+..||..+.....  +... ........|.+
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~--~~~~-~~~l~~~~v~~  456 (795)
T 4a2l_A          380 NLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN--FNQR-NSQLVNENVYA  456 (795)
T ss_dssp             EEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE--ECTT-TSCCSCSCEEE
T ss_pred             EEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE--eecC-CCCcCCCeeEE
Confidence            999998877665431         13568999988888868888888889999988765322  1110 11122467899


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEEECCccee-eEee-----cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          424 IQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~-----~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      +...++| . |..|+. +.+.+||..+... .+..     ......|.++..+++|.+.+.+.  +-+..||..+..
T Consensus       457 i~~d~~g-~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~  528 (795)
T 4a2l_A          457 ILPDGEG-N-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD  528 (795)
T ss_dssp             EEECSSS-C-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred             EEECCCC-C-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence            9988887 4 444555 4588898664322 1211     11236789999999988766554  558888876653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.46  E-value=3.6e-05  Score=72.74  Aligned_cols=193  Identities=8%  Similarity=0.044  Sum_probs=123.8

Q ss_pred             ceeeccCccC--eEEEEEcCCC-eEEEEeCCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEE-EEEeCCCcEE
Q 006424          280 LQELHGHKGD--VLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGSIDGKVR  353 (645)
Q Consensus       280 ~~~l~~h~~~--V~~l~~s~~~-~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l-~s~s~dg~i~  353 (645)
                      +.++ .|...  ...+.|+ ++ .+.+.+.+|  .|+++|+.+++.+...............+ .++.+ +..-.++.+.
T Consensus        34 v~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~-~g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           34 VHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD-WKDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE-ETTEEEEEESSSSEEE
T ss_pred             EEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE-eCCEEEEEEeeCCEEE
Confidence            4455 35443  4788998 56 555666665  89999999999998887555544433333 34444 4444588999


Q ss_pred             EEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424          354 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  433 (645)
Q Consensus       354 vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~  433 (645)
                      +||..+.+.+........-  ..++++++.|+.+..++.|.++|..+.+... .+...... ..-..++.+.|. +| ..
T Consensus       111 v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~-~I~V~~~g-~~~~~lNELe~~-~G-~l  184 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVR-TITVTAHG-EELPELNELEWV-DG-EI  184 (262)
T ss_dssp             EEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEE-EEECEETT-EECCCEEEEEEE-TT-EE
T ss_pred             EEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEE-EEEeccCC-ccccccceeEEE-CC-EE
Confidence            9999998887655444322  3344678888887778889999998876533 33332110 001334557776 55 55


Q ss_pred             EEEEECCCeEEEEECCcc--eeeEeec----------CCCCCeEEEEEecCCCEEEEEeC
Q 006424          434 IMITSEDSKLRILDGVDV--IHKFKGL----------PKSGSQMSASFTTTGKHIISIGD  481 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~~~--~~~~~~~----------~~~~~i~~v~~sp~~~~l~t~s~  481 (645)
                      ++..-.++.|.+.|..+.  ...+...          ......++++|+|+++.|+..+.
T Consensus       185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            555556889999997643  2233221          11245689999999887777664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.42  E-value=0.00011  Score=68.85  Aligned_cols=194  Identities=11%  Similarity=0.067  Sum_probs=123.3

Q ss_pred             ccccccccc--CcEEEEEECCCCCEEEEEeCCC--cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceee
Q 006424          192 TSQEIQAHK--GCIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV  267 (645)
Q Consensus       192 ~~~~l~~H~--~~V~~l~fspdg~~L~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (645)
                      ..+++ .|.  .-...+.|++ +.+..+.+.+|  .|+.+|+.+++...                               
T Consensus        11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~-------------------------------   57 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQ-------------------------------   57 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEE-------------------------------
T ss_pred             EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEE-------------------------------
Confidence            33444 354  3467899986 66666777654  89999999854432                               


Q ss_pred             cCCCceeccCCCceeeccCcc-CeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE
Q 006424          268 IPDEVFQIEESPLQELHGHKG-DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       268 ~~~~~~~~~~~~~~~l~~h~~-~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                                    ...-... ---.++...+......-.++.+.++|..+.+.+.++.....-..++.   ++..|+.+
T Consensus        58 --------------~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt~---dg~~L~vS  120 (243)
T 3mbr_X           58 --------------RAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALTS---DDSHLYMS  120 (243)
T ss_dssp             --------------EEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEEE---CSSCEEEE
T ss_pred             --------------EEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEee---CCCEEEEE
Confidence                          2211111 11223443333444556789999999999999999976554455554   56666666


Q ss_pred             eCCCcEEEEeCCCCcEEEeeccC------CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc-----
Q 006424          347 SIDGKVRIWGVCEKRVVDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-----  415 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~~~~~~------~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----  415 (645)
                      ..++.|.++|..+.+........      ..++.+.+. +|+..+..-.+..|.+.|..+++.. ..+.+.+...     
T Consensus       121 dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~-~~idl~~l~~~~~~~  198 (243)
T 3mbr_X          121 DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVV-AWIDLQALVPDADAL  198 (243)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEE-EEEECGGGSTTTTSC
T ss_pred             CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEE-EEEECCcCccccccc
Confidence            66889999999997766533221      245666665 6665555546889999999988763 3444432211     


Q ss_pred             --cCCCCeEEEEEcCCCCcEEEEE
Q 006424          416 --TSGNKITGIQFSRDESQRIMIT  437 (645)
Q Consensus       416 --~~~~~i~~i~~s~~g~~~l~~~  437 (645)
                        ......+.|+++|++..++++|
T Consensus       199 ~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          199 TDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             cCCcCCceEEEEEcCCCCEEEEEC
Confidence              1234678999999875555554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.40  E-value=7.1e-06  Score=82.08  Aligned_cols=174  Identities=18%  Similarity=0.074  Sum_probs=112.5

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE-EeeccCCCeEEE
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAI  375 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~v~~l  375 (645)
                      ++.+..++.++.|..+|.. ++....+. ....+.++...+ ++. +..++.++.|..+|.. ++.. ........+.++
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~  182 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA  182 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence            6788889999999999998 77665554 333455666665 454 6667788999999998 6554 343344567777


Q ss_pred             EEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeE
Q 006424          376 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF  455 (645)
Q Consensus       376 ~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~  455 (645)
                      ...+++.. .+++  +.+..+| .+..... .....      ...+.++...++|  .+.+++.++.|..+|..... ..
T Consensus       183 ~~d~~g~l-~v~t--~~l~~~d-~~g~~~~-~~~~~------~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~g~~-~~  248 (330)
T 3hxj_A          183 SIGKDGTI-YFGS--DKVYAIN-PDGTEKW-NFYAG------YWTVTRPAISEDG--TIYVTSLDGHLYAINPDGTE-KW  248 (330)
T ss_dssp             EECTTCCE-EEES--SSEEEEC-TTSCEEE-EECCS------SCCCSCCEECTTS--CEEEEETTTEEEEECTTSCE-EE
T ss_pred             EEcCCCEE-EEEe--CEEEEEC-CCCcEEE-EEccC------CcceeceEECCCC--eEEEEcCCCeEEEECCCCCE-eE
Confidence            77777764 4455  8888998 4443322 11111      2457778888886  56777888888888853222 12


Q ss_pred             eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          456 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       456 ~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      ........+..+.+.+++ .|..++.+|.|..+|.
T Consensus       249 ~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          249 RFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP  282 (330)
T ss_dssp             EEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred             EeeCCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence            221122333445555555 5667778888999985

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.39  E-value=5.7e-05  Score=71.40  Aligned_cols=183  Identities=10%  Similarity=0.051  Sum_probs=121.8

Q ss_pred             CeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEE--EEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEee
Q 006424          289 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC--VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA  366 (645)
Q Consensus       289 ~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~--l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  366 (645)
                      -...+.|+.+..+.+.+.+|.|+++|+++++.+... .......  +++.  .+.+.+..-.++.+.+||..+.+.+...
T Consensus        56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            347888885446778888899999999999988877 4444444  5543  3455555556899999999998887755


Q ss_pred             ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424          367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  446 (645)
Q Consensus       367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw  446 (645)
                      .....-..++  ++++.|+++..++.|.++|..+.+.. ..+....... .-..++.+.|. +| ..++..-.++.|.+.
T Consensus       133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~-~~I~V~~~g~-~v~~lNeLe~~-dG-~lyanvw~s~~I~vI  206 (268)
T 3nok_A          133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALV-GAVQVKLRGQ-PVELINELECA-NG-VIYANIWHSSDVLEI  206 (268)
T ss_dssp             ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEE-EEEECEETTE-ECCCEEEEEEE-TT-EEEEEETTCSEEEEE
T ss_pred             eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEE-EEEEeCCCCc-ccccccccEEe-CC-EEEEEECCCCeEEEE
Confidence            4443333444  67888888888999999999887653 3333322110 11345667777 55 555555568899999


Q ss_pred             ECCcc--eeeEeec-----------CCCCCeEEEEEecCCCEEEEEe
Q 006424          447 DGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       447 d~~~~--~~~~~~~-----------~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      |..+.  ...+...           ......++|+++|+++.|+..+
T Consensus       207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            97643  2233221           1234678999999876655554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.38  E-value=0.0011  Score=74.90  Aligned_cols=284  Identities=9%  Similarity=0.065  Sum_probs=159.7

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCC-CCcccCCCCceEEecccC--CCcceeec-CCCceecc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD-GGFGSNAKEGKIKFGKKK--SSHVPVVI-PDEVFQIE  276 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~  276 (645)
                      ..|.++...++|..|..|+.++-+..||..+........... ......  .....+....  ....-+.. ...++..+
T Consensus        66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~--~~i~~i~~d~~~~g~lwi~t~~~gl~~~~  143 (781)
T 3v9f_A           66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLIT--NDVTHITSSVQAGKGLWVCTYYRGIEYLD  143 (781)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSC--SCEEEEEECSSTTSEEEEEESSSCEEEEE
T ss_pred             cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCccc--CcceEEEecCccCCCEEEEECCCCeeEEE
Confidence            459999999888745567777458999987654332211100 000000  0000111111  11111111 11222111


Q ss_pred             --CCCceeec------cCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec--------CCCcEEEEEEeeCCC
Q 006424          277 --ESPLQELH------GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDD  340 (645)
Q Consensus       277 --~~~~~~l~------~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--------~~~~v~~l~~~p~~~  340 (645)
                        ......+.      -....|.++...+++.|..++.++-+..||..+++......        ....|.++...+ ++
T Consensus       144 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g  222 (781)
T 3v9f_A          144 IATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDT-NG  222 (781)
T ss_dssp             TTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECT-TC
T ss_pred             CCCCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcC-CC
Confidence              11122221      11345888888778888888887679999988776543211        135688888876 66


Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEEEeec--------cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE----
Q 006424          341 NYFISGSIDGKVRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV----  408 (645)
Q Consensus       341 ~~l~s~s~dg~i~vwd~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~----  408 (645)
                      .+.+ |+.+ -+.+||..+++...+..        ....|.++...++|. +.+|+..+-|.++|..+........    
T Consensus       223 ~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~  299 (781)
T 3v9f_A          223 NIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFE  299 (781)
T ss_dssp             CEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CE
T ss_pred             CEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccc
Confidence            6554 4545 69999988776554321        235688998887774 6667776678888887654322111    


Q ss_pred             ---eeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc-eeeEee--------cCCCCCeEEEEEecCCCEE
Q 006424          409 ---DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKG--------LPKSGSQMSASFTTTGKHI  476 (645)
Q Consensus       409 ---~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~--------~~~~~~i~~v~~sp~~~~l  476 (645)
                         ............|.++...++|  .|-.|+.++.|..++.... ...+..        ......|.++..+++|.+.
T Consensus       300 ~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW  377 (781)
T 3v9f_A          300 FIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW  377 (781)
T ss_dssp             EECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE
T ss_pred             cccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE
Confidence               0000111234678999998887  4677787888889986532 222211        1123568999888877654


Q ss_pred             EEEeCCccEEEEeCCCC
Q 006424          477 ISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       477 ~t~s~dg~I~iwd~~~~  493 (645)
                       .|+.++-|..||..+.
T Consensus       378 -igt~~~Gl~~~~~~~~  393 (781)
T 3v9f_A          378 -IGTDGGGINVFENGKR  393 (781)
T ss_dssp             -EEEBSSCEEEEETTEE
T ss_pred             -EEeCCCcEEEEECCCC
Confidence             5566667888987654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.37  E-value=0.00018  Score=67.41  Aligned_cols=195  Identities=7%  Similarity=0.003  Sum_probs=124.7

Q ss_pred             ceeeccCc--cCeEEEEEcCCCeEEEEeCCC--cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          280 LQELHGHK--GDVLDLAWSNSNYLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       280 ~~~l~~h~--~~V~~l~~s~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      +.++ .|.  .-...+.|+++..+.+.+.+|  .|+.+|+.+++.+...............+..+.+....-.++.+.+|
T Consensus        12 ~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~   90 (243)
T 3mbr_X           12 VKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVY   90 (243)
T ss_dssp             EEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             EEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            3444 455  346689998744556666654  89999999999999887554444333333134455555568899999


Q ss_pred             eCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          356 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       356 d~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      |..+.+.+........-..++  ++++.|+++..++.|.++|..+.+.. ..+....... .-..++.+.+. +| ..++
T Consensus        91 D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~-~~I~V~~~g~-~~~~lNeLe~~-~G-~lya  164 (243)
T 3mbr_X           91 DLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQV-GSIKVTAGGR-PLDNLNELEWV-NG-ELLA  164 (243)
T ss_dssp             ETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEE-EEEECEETTE-ECCCEEEEEEE-TT-EEEE
T ss_pred             ECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEE-EEEEEccCCc-ccccceeeEEe-CC-EEEE
Confidence            999988877555444334444  67888888888899999999887653 3333322110 11345566665 44 5555


Q ss_pred             EEECCCeEEEEECCcc--eeeEeec-----------CCCCCeEEEEEecCCCEEEEEeC
Q 006424          436 ITSEDSKLRILDGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHIISIGD  481 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~~--~~~~~~~-----------~~~~~i~~v~~sp~~~~l~t~s~  481 (645)
                      ..-.+..|.+.|..+.  ...+...           ......++++++|+++.|+..+.
T Consensus       165 nvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          165 NVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            5546789999997643  2223211           12236689999998777766653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.33  E-value=0.00067  Score=76.67  Aligned_cols=243  Identities=9%  Similarity=0.062  Sum_probs=149.9

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      ..|.++...++|.+.+.. .+ -+.+||..+........                                      ...
T Consensus       211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~--------------------------------------~~~  250 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHN--------------------------------------NPG  250 (781)
T ss_dssp             SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC--------------------------------------------
T ss_pred             CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEc--------------------------------------CCC
Confidence            569999998888765543 44 48888876532110000                                      000


Q ss_pred             eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec---------------CCCcEEEEEEeeCCCCEEEE
Q 006424          281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---------------HHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~---------------~~~~v~~l~~~p~~~~~l~s  345 (645)
                      ....-....|.++...+++.|..|+..+-|.++|..++.......               ....|.++...+ +++ |-.
T Consensus       251 ~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~-lWi  328 (781)
T 3v9f_A          251 NIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNN-IWI  328 (781)
T ss_dssp             -----CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS-SCC-EEE
T ss_pred             ccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCC-EEE
Confidence            000012456899998888888888886778999987665432111               245689998887 665 556


Q ss_pred             EeCCCcEEEEeCCCCcEEEeec----------cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccc
Q 006424          346 GSIDGKVRIWGVCEKRVVDWAD----------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK  415 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~~~~~~~----------~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  415 (645)
                      |+.++-|..++........+..          ....|.++...++|. |.+|+.++-+..||..+......    .....
T Consensus       329 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~----~~~~~  403 (781)
T 3v9f_A          329 GTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYN----KENRE  403 (781)
T ss_dssp             EEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC---------
T ss_pred             EecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEc----cCCCC
Confidence            6767779999988766544321          235688998888775 56777777788888764332111    10011


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcce-eeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          416 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       416 ~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .....|.++...++|  .|.+|+.++.+..+|..... ..+.. ......|.++..++++.+.+. +. +-|..||..++
T Consensus       404 ~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~  479 (781)
T 3v9f_A          404 LLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASK  479 (781)
T ss_dssp             CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSS
T ss_pred             CCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCC
Confidence            123678899888876  46667877789999875332 22211 113467899988888765554 44 45888998765


Q ss_pred             C
Q 006424          494 C  494 (645)
Q Consensus       494 ~  494 (645)
                      .
T Consensus       480 ~  480 (781)
T 3v9f_A          480 K  480 (781)
T ss_dssp             S
T ss_pred             e
Confidence            4

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.32  E-value=0.00031  Score=69.43  Aligned_cols=231  Identities=11%  Similarity=-0.047  Sum_probs=135.6

Q ss_pred             cCeEEEEEcCCCeEE-EEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCcEEE
Q 006424          288 GDVLDLAWSNSNYLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVD  364 (645)
Q Consensus       288 ~~V~~l~~s~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~  364 (645)
                      .....++|++++.|+ +-..++.|..||... .....+.....+..+++.+ +++++++.....  .|..+|..++++..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            457789999988544 444788999999875 3444445556789999999 888666554332  47777877777654


Q ss_pred             eecc--CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecc---ccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424          365 WADV--RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD---RKKTSGNKITGIQFSRDESQRIMITSE  439 (645)
Q Consensus       365 ~~~~--~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~i~~i~~s~~g~~~l~~~s~  439 (645)
                      +...  ......++..+++..+++-..+|.|..+|...............   ...........+  ++++..++++-..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            4322  22344555555554444444588888888765322111000000   000011234555  7777455566667


Q ss_pred             CCeEEEEECCc-c----eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCC
Q 006424          440 DSKLRILDGVD-V----IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG  514 (645)
Q Consensus       440 dg~I~iwd~~~-~----~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g  514 (645)
                      .+.|..++... .    ...+..   ......++++++|++.++....+.|.++|.. +.........        .+-.
T Consensus       188 ~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--------~~~~  255 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--------QGVI  255 (306)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--------GTCT
T ss_pred             CCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--------cccC
Confidence            78999999753 1    111211   1345678999999887777778899999865 3211000000        0112


Q ss_pred             cEEEEecC---CCCccccccCCC
Q 006424          515 VSVAVQWP---GIGTEQKSLCSS  534 (645)
Q Consensus       515 ~~~~v~~s---~~~~~l~~~~~~  534 (645)
                      ...+++|.   |++..|+.....
T Consensus       256 ~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          256 GSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             TEEEEEECCSTTTTTEEEEEECT
T ss_pred             CceEEEEecccCCCCEEEEECCC
Confidence            35677777   777777755543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.32  E-value=6.9e-05  Score=82.87  Aligned_cols=204  Identities=8%  Similarity=0.072  Sum_probs=111.3

Q ss_pred             CeEEEEEcCCC-eEEEEe-CCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEe-CC-----CcEEEEeCC
Q 006424          289 DVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGS-ID-----GKVRIWGVC  358 (645)
Q Consensus       289 ~V~~l~~s~~~-~l~s~s-~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s-~d-----g~i~vwd~~  358 (645)
                      ...++++..++ .++.|+ .+..+.+||..+++....-.  ....-.+++..+ ++++++.|+ .+     ..+.+||..
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCC
Confidence            34456666776 666776 34689999998776544322  222223445556 788999988 34     569999998


Q ss_pred             CCcEEEeec-----cCCCeEEEEEccCCCEEEEEecCC---------eEEEEEecCCceeeeEEeecccc---ccCCCCe
Q 006424          359 EKRVVDWAD-----VRDVISAICYIPDGKGFIVGSITG---------TCHFYKASGNDLKLEKVDFHDRK---KTSGNKI  421 (645)
Q Consensus       359 ~~~~~~~~~-----~~~~v~~l~~sp~g~~l~~g~~dg---------~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~i  421 (645)
                      +++-..+..     ....-....+..++..++.|+.+|         .+..||..+...... .......   ......-
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~-~~~~~~~~~~~~~~~~~  401 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS-AGKRQSNRGVAPDAMCG  401 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE-EEECEETTEECCCCBTC
T ss_pred             CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeec-CCccccccccCCCCCCC
Confidence            877554311     100000011224555556665544         567888876654321 1111000   0001122


Q ss_pred             EEEEEcCCCCcEEEEEECCC-----------eEEEEECCcceee-Ee-ecCCCCC-eEEEEEecCCCEEEEEeCC-----
Q 006424          422 TGIQFSRDESQRIMITSEDS-----------KLRILDGVDVIHK-FK-GLPKSGS-QMSASFTTTGKHIISIGDD-----  482 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~dg-----------~I~iwd~~~~~~~-~~-~~~~~~~-i~~v~~sp~~~~l~t~s~d-----  482 (645)
                      .++.|...+..+++.|+.++           .|.+||.....-. .. ....... -.+++..|++++++.|+.+     
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence            34445442337788877532           6778886532221 11 0112222 2345667899999999864     


Q ss_pred             ------ccEEEEeCCCCC
Q 006424          483 ------CRVYVWNYDELC  494 (645)
Q Consensus       483 ------g~I~iwd~~~~~  494 (645)
                            ..+.+||..+..
T Consensus       482 ~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             CCCSBCCCCEEEEGGGTE
T ss_pred             CCCCcccceEEEcCCCCc
Confidence                  468999987654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.32  E-value=0.00041  Score=65.91  Aligned_cols=206  Identities=12%  Similarity=0.200  Sum_probs=134.5

Q ss_pred             eeccCccCeEEEEEcCCC-e-EEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424          282 ELHGHKGDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  357 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~~-~-l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~  357 (645)
                      .+.+-...+..++|+|++ . +++...++.|...|.. ++.+..+.  .......+++.+ ++.++++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence            455666789999999864 4 4457778899999998 88887764  335688889987 7766666556778999987


Q ss_pred             CCCcE---EEee-------ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce--eeeEEeecc-ccccCCCCeEEE
Q 006424          358 CEKRV---VDWA-------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL--KLEKVDFHD-RKKTSGNKITGI  424 (645)
Q Consensus       358 ~~~~~---~~~~-------~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~-~~~~~~~~i~~i  424 (645)
                      .....   ....       ..+.....++|+|.++.|+++.......+|.+.....  ......... ........+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65331   1111       2234568999999998888887776666776652100  111111000 001112457899


Q ss_pred             EEcCCCCcEEEEEECCCeEEEEECCcc-eeeEeecCC-------CCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          425 QFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPK-------SGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       425 ~~s~~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~-------~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      +++|....+++.+.....+.++|.... ...+.....       -....+|+|+++|++.++ ++-..++.+.-
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            999986577777778889999997633 333333211       125689999999985555 77777777654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.23  E-value=0.00016  Score=78.12  Aligned_cols=198  Identities=10%  Similarity=-0.024  Sum_probs=117.8

Q ss_pred             CCeEEEEeC------CCcEEEEecCCCeEEEEecCCCcE---------------------------------------EE
Q 006424          298 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TC  332 (645)
Q Consensus       298 ~~~l~s~s~------dg~I~iwd~~~~~~~~~~~~~~~v---------------------------------------~~  332 (645)
                      ++.++.++.      ++.|..+|..+|+.+-.+......                                       ..
T Consensus       160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~  239 (571)
T 2ad6_A          160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW  239 (571)
T ss_dssp             TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred             CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence            456666655      789999999999988776422111                                       13


Q ss_pred             EEEeeCCCCEEEEEeCC----------------CcEEEEeCCCCcEEEeec---cC-------CCeEEEEEccCCC---E
Q 006424          333 VQFNPIDDNYFISGSID----------------GKVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---G  383 (645)
Q Consensus       333 l~~~p~~~~~l~s~s~d----------------g~i~vwd~~~~~~~~~~~---~~-------~~v~~l~~sp~g~---~  383 (645)
                      +++.+ ....++.++.+                +.|..+|.++++.+-...   +.       ....-+...++|+   .
T Consensus       240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~  318 (571)
T 2ad6_A          240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL  318 (571)
T ss_dssp             CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred             EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence            56666 55666666532                359999999988765322   11       1111122334774   5


Q ss_pred             EEEEecCCeEEEEEecCCceeeeEEeeccccc-------cCCCCe--------------------------EEEEEcCCC
Q 006424          384 FIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-------TSGNKI--------------------------TGIQFSRDE  430 (645)
Q Consensus       384 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~i--------------------------~~i~~s~~g  430 (645)
                      ++.++.+|.++++|..+++.... ..+.....       ....++                          ..++++|+.
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~-~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVA-EKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEE-EESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEeCCCcEEEEEECCCCCEEee-ecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            77888999999999988775432 22111000       000011                          245677775


Q ss_pred             CcEEEEEE-------------------------------------CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCC
Q 006424          431 SQRIMITS-------------------------------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG  473 (645)
Q Consensus       431 ~~~l~~~s-------------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~  473 (645)
                       .++++.+                                     .++.|..||..+.....+.. ....+.+..+...+
T Consensus       398 -g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~-~~~~~~~~~~~t~g  475 (571)
T 2ad6_A          398 -RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW-EKFAAWGGTLYTKG  475 (571)
T ss_dssp             -TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETT
T ss_pred             -CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec-CCCCccceeEEECC
Confidence             4555443                                     34788889977544433332 11222222333456


Q ss_pred             CEEEEEeCCccEEEEeCCCCCcCCCc
Q 006424          474 KHIISIGDDCRVYVWNYDELCFPSSK  499 (645)
Q Consensus       474 ~~l~t~s~dg~I~iwd~~~~~~~~~~  499 (645)
                      ..++.++.||.|+.||..+++.....
T Consensus       476 g~v~~g~~dg~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          476 GLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCCEEEEE
Confidence            78888999999999999998755443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.23  E-value=0.00049  Score=71.52  Aligned_cols=242  Identities=12%  Similarity=0.100  Sum_probs=137.1

Q ss_pred             cEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          202 CIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       202 ~V~~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      ....|+++| ++..|..+...+.|+.+|..+..                                              +
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~----------------------------------------------v  171 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY----------------------------------------------V  171 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE----------------------------------------------E
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE----------------------------------------------E
Confidence            456889998 45556655555778888876521                                              2


Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEEeCC-C----cEEEEecCCCeEE--EEecCCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSCSMD-K----TVRMWQVGCNQCL--NVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  352 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~s~d-g----~I~iwd~~~~~~~--~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i  352 (645)
                      ..+.........++|++++ .|+.+... +    .+...+.. +...  ..+........++++|.++.++++-..++.|
T Consensus       172 ~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V  250 (430)
T 3tc9_A          172 STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQV  250 (430)
T ss_dssp             EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEE
Confidence            2222234567889999987 46666542 1    23334432 2211  2222223456778898555656665567889


Q ss_pred             EEEeCCCCcEEEee--ccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceee---eEEeec-ccc--------ccC
Q 006424          353 RIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKL---EKVDFH-DRK--------KTS  417 (645)
Q Consensus       353 ~vwd~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~---~~~~~~-~~~--------~~~  417 (645)
                      ..++..++....+.  ........++|+|+|++|+++. ..+.|..++........   ..+.-. +..        ...
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~  330 (430)
T 3tc9_A          251 FRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKAR  330 (430)
T ss_dssp             EEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCB
T ss_pred             EEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceE
Confidence            99999877653332  2234578999999999666554 56789998876531111   111100 000        000


Q ss_pred             CCCeE-EEEEc--------CCCCcEEEEEECCCeEEEEECCcceeeEeecC----------------CCCCeEEEEEecC
Q 006424          418 GNKIT-GIQFS--------RDESQRIMITSEDSKLRILDGVDVIHKFKGLP----------------KSGSQMSASFTTT  472 (645)
Q Consensus       418 ~~~i~-~i~~s--------~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~----------------~~~~i~~v~~sp~  472 (645)
                      -.... .+...        ++| .++++-...+.|+.++.......+.+..                .-.....++++|+
T Consensus       331 ~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~  409 (430)
T 3tc9_A          331 MHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEE  409 (430)
T ss_dssp             BSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETT
T ss_pred             eCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECC
Confidence            01222 44443        334 4555555567888888543333333320                0125789999995


Q ss_pred             -CCEEEEEeCCccEEEEeCC
Q 006424          473 -GKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       473 -~~~l~t~s~dg~I~iwd~~  491 (645)
                       +.++++-..+.+|+.++++
T Consensus       410 ~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          410 RECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TTEEEEEEGGGTEEEEEEEC
T ss_pred             CCEEEEEECCCCeEEEEccC
Confidence             5555555567788887754

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.21  E-value=0.00046  Score=68.76  Aligned_cols=182  Identities=11%  Similarity=0.028  Sum_probs=115.5

Q ss_pred             cCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec--------------------CCCcEEEEEEeeCCCCEEEEE
Q 006424          288 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------------------HHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       288 ~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--------------------~~~~v~~l~~~p~~~~~l~s~  346 (645)
                      ....+++|++++ .++++..++.|..||..+++......                    ....+.++++.+ +...|+++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~v~   97 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLYIV   97 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCCcEEEE
Confidence            345678888887 58888899999999987654432110                    012478899986 44556666


Q ss_pred             eCCCcEEEEeCCCCcEEEeec-----cCCCeEEEEEcc-CCCEEEEEec-----------------CCeEEEEEecCCce
Q 006424          347 SIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIP-DGKGFIVGSI-----------------TGTCHFYKASGNDL  403 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~~~~-----~~~~v~~l~~sp-~g~~l~~g~~-----------------dg~i~iwd~~~~~~  403 (645)
                      ...+.|..+|..++....+..     .......+++.+ +|+..++-..                 +|.|..||..+...
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            656668999987665433321     123478899999 8976555322                 36788888765543


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc----ceeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424          404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHIISI  479 (645)
Q Consensus       404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~i~~v~~sp~~~~l~t~  479 (645)
                      ......+        .....++++|+|..++++-+..+.|.+|+...    ....+..  ..+ ...++++++|++.++.
T Consensus       178 ~~~~~~~--------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          178 TLLLKEL--------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             EEEEEEE--------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEE
T ss_pred             EEeccCC--------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEe
Confidence            2211111        23467999999833444546678999999763    1222222  223 7889999999877665


Q ss_pred             eC
Q 006424          480 GD  481 (645)
Q Consensus       480 s~  481 (645)
                      ..
T Consensus       247 ~~  248 (322)
T 2fp8_A          247 SE  248 (322)
T ss_dssp             EE
T ss_pred             cC
Confidence            43

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.19  E-value=4.2e-05  Score=84.52  Aligned_cols=195  Identities=11%  Similarity=0.075  Sum_probs=121.1

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCCc------------EEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY------------VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  365 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------------v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~  365 (645)
                      ++.++.++.++.|..+|..+|+.+-.+.....            -..+.+   .+..+++++.|+.|..+|..+++.+-.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence            56888888899999999999999887753211            012233   345788888899999999999987653


Q ss_pred             eccCC--CeEEEEEcc--CCCEEEEEec------CCeEEEEEecCCceeeeEEeeccccc--------------------
Q 006424          366 ADVRD--VISAICYIP--DGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKK--------------------  415 (645)
Q Consensus       366 ~~~~~--~v~~l~~sp--~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~--------------------  415 (645)
                      .....  ....+..+|  .+..++++..      +|.|..+|..+++.............                    
T Consensus       143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~  222 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (668)
T ss_dssp             EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence            32211  000011111  2345666543      58999999998876443211111000                    


Q ss_pred             ----cCCCCeEEEEEcCCCCcEEEEEECCC-------------------eEEEEECCcceeeEeecC--CC-------CC
Q 006424          416 ----TSGNKITGIQFSRDESQRIMITSEDS-------------------KLRILDGVDVIHKFKGLP--KS-------GS  463 (645)
Q Consensus       416 ----~~~~~i~~i~~s~~g~~~l~~~s~dg-------------------~I~iwd~~~~~~~~~~~~--~~-------~~  463 (645)
                          ........+++.|++ .+++.++.++                   .|.-+|..+.........  |.       .+
T Consensus       223 w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~  301 (668)
T 1kv9_A          223 WKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ  301 (668)
T ss_dssp             HHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence                011122346788875 5777877765                   388899776544443321  21       23


Q ss_pred             eEEEEEecCCC---EEEEEeCCccEEEEeCCCCCcC
Q 006424          464 QMSASFTTTGK---HIISIGDDCRVYVWNYDELCFP  496 (645)
Q Consensus       464 i~~v~~sp~~~---~l~t~s~dg~I~iwd~~~~~~~  496 (645)
                      .....+..+|+   .++.++.+|.++++|..+++..
T Consensus       302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            33334445775   6889999999999999998754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.18  E-value=0.0016  Score=66.52  Aligned_cols=199  Identities=6%  Similarity=-0.073  Sum_probs=126.5

Q ss_pred             ccCeEEEEEcCC-CeEE-EEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE
Q 006424          287 KGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  363 (645)
Q Consensus       287 ~~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~  363 (645)
                      ......++|++. +.|+ +-...+.|..+++..+.....+. .......+++.+..++++++-...+.|.+.++......
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            345788999964 5544 55567889999988665444333 22345678888744555566566778999998765544


Q ss_pred             Eee-ccCCCeEEEEEccCCCEEEEEec-C-CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424          364 DWA-DVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  440 (645)
Q Consensus       364 ~~~-~~~~~v~~l~~sp~g~~l~~g~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d  440 (645)
                      .+. ..-.....++++|.+..|+.... . +.|..+++.+...... . ...     ......++++|++..++++-+..
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~-~~~-----~~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-A-DTH-----LFWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-E-CSS-----CSCEEEEEEEGGGTEEEEEETTT
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE-E-ECC-----CCCeeeEEEeCCCCEEEEEECCC
Confidence            333 33356889999997776666553 3 6788888775433211 1 111     24578999998764666666667


Q ss_pred             CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          441 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       441 g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +.|..+|..................++++ ..+.++++-...+.|..++..++
T Consensus       268 ~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          268 HVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             TEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             CEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence            89999997632222222223446678888 34555666666788888885555

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.17  E-value=0.0025  Score=64.14  Aligned_cols=198  Identities=6%  Similarity=-0.066  Sum_probs=125.6

Q ss_pred             cCeEEEEEcCC-CeEE-EEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE
Q 006424          288 GDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  364 (645)
Q Consensus       288 ~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~  364 (645)
                      ..+..++|++. +.|+ +-...+.|..+++..+....... .......+++.+..++++++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            45788999864 5554 44567889999987655433332 223467888887445555665667889999988765444


Q ss_pred             ee-ccCCCeEEEEEccCCCEEEEEec-C-CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC
Q 006424          365 WA-DVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  441 (645)
Q Consensus       365 ~~-~~~~~v~~l~~sp~g~~l~~g~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg  441 (645)
                      +. ..-.....++++|.+..|+.... . +.|..+++.+......   ...    .......++++|++..++++-+..+
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~---~~~----~~~~PnGla~d~~~~~lY~aD~~~~  225 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII---ADT----HLFWPNGLTIDYAGRRMYWVDAKHH  225 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES---CCS----SCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE---EEC----CCCCcceEEEeCCCCEEEEEECCCC
Confidence            33 33456789999997666665543 3 6788888775433211   111    1245789999987645666666678


Q ss_pred             eEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          442 KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       442 ~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .|..+|..................++++. .+...++-...+.|..++..++
T Consensus       226 ~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          226 VIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             EEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCC
Confidence            99999976322222122234466788883 4555555556788888885554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.14  E-value=0.0055  Score=60.69  Aligned_cols=199  Identities=12%  Similarity=-0.026  Sum_probs=124.8

Q ss_pred             ccCeEEEEEcCC-CeEE-EEeCCCcEEEEecCC----CeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424          287 KGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGC----NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  359 (645)
Q Consensus       287 ~~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~----~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  359 (645)
                      ......++|++. +.|+ +-..++.|..+++..    ......+. .-.....+++.+.+++++++-...+.|.++++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            345778999875 4544 555568999999875    22222222 2235678888873455555556678999999987


Q ss_pred             CcEEEeec-cCCCeEEEEEccCCCEEEEEecC--CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          360 KRVVDWAD-VRDVISAICYIPDGKGFIVGSIT--GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       360 ~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      .....+.. .......++++|.+..|+.+...  +.|..+++.+.....  + ...    .......+++++++..++++
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~-~~~----~~~~P~gla~d~~~~~lY~~  181 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--L-VTE----NIQWPNGITLDLLSGRLYWV  181 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--E-ECS----SCSCEEEEEEETTTTEEEEE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--E-EEC----CCCCceEEEEeccCCEEEEE
Confidence            65544332 34567899999977766665543  678888876543321  1 111    12457899999886455566


Q ss_pred             EECCCeEEEEECCc-ceeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          437 TSEDSKLRILDGVD-VIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       437 ~s~dg~I~iwd~~~-~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      -+..+.|..+|... ....+.. ........++++. .+.++++-...+.|..++..++
T Consensus       182 D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence            66678999999763 2223322 1123456788885 3555566666788999987655

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.12  E-value=8.6e-05  Score=82.06  Aligned_cols=197  Identities=11%  Similarity=0.075  Sum_probs=122.2

Q ss_pred             CCeEEEEeC------CCcEEEEecCCCeEEEEecCC--C------------------------------cEEEEEEeeCC
Q 006424          298 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHH--N------------------------------YVTCVQFNPID  339 (645)
Q Consensus       298 ~~~l~s~s~------dg~I~iwd~~~~~~~~~~~~~--~------------------------------~v~~l~~~p~~  339 (645)
                      ++.++.+..      +|.|..+|..+|+.+..+...  .                              ....++++| +
T Consensus       162 ~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~  240 (668)
T 1kv9_A          162 KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-E  240 (668)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-T
T ss_pred             CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-C
Confidence            455555543      589999999999988776421  0                              012367888 7


Q ss_pred             CCEEEEEeCCC-------------------cEEEEeCCCCcEEEeec---cC-------CCeEEEEEccCCC---EEEEE
Q 006424          340 DNYFISGSIDG-------------------KVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---GFIVG  387 (645)
Q Consensus       340 ~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~---~~-------~~v~~l~~sp~g~---~l~~g  387 (645)
                      .++++.++.++                   .|..+|.++++.+-...   |.       .+.....+..+|+   .++++
T Consensus       241 ~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~  320 (668)
T 1kv9_A          241 LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQA  320 (668)
T ss_dssp             TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEE
Confidence            77888887765                   39999999998765332   21       2233333344675   68889


Q ss_pred             ecCCeEEEEEecCCceeeeEEeeccc-----cc-cCC------------------------CCeEEEEEcCCCCcEEEEE
Q 006424          388 SITGTCHFYKASGNDLKLEKVDFHDR-----KK-TSG------------------------NKITGIQFSRDESQRIMIT  437 (645)
Q Consensus       388 ~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~-~~~------------------------~~i~~i~~s~~g~~~l~~~  437 (645)
                      +.+|.++++|..+++.... ..+...     .. ...                        ..-..++++|+. .++++.
T Consensus       321 ~~~G~l~~lD~~tG~~l~~-~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~-g~~yv~  398 (668)
T 1kv9_A          321 PKNGFFYVLDRTNGKLISA-EKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT-GLVYIP  398 (668)
T ss_dssp             CTTSEEEEEETTTCCEEEE-EESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEE
T ss_pred             CCCCEEEEEECCCCCEecc-ccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC-CEEEEe
Confidence            9999999999988876421 111000     00 000                        001125677765 344331


Q ss_pred             ------------------------------------ECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC
Q 006424          438 ------------------------------------SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD  481 (645)
Q Consensus       438 ------------------------------------s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~  481 (645)
                                                          ..+|.|..||..+.....+... ..+.....+...+.+++.++.
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~vf~g~~  477 (668)
T 1kv9_A          399 YQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTA  477 (668)
T ss_dssp             EEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECT
T ss_pred             ccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC-CCCCcCceeEeCCCEEEEECC
Confidence                                                1247899999876655444321 222333345567889999999


Q ss_pred             CccEEEEeCCCCCcCCC
Q 006424          482 DCRVYVWNYDELCFPSS  498 (645)
Q Consensus       482 dg~I~iwd~~~~~~~~~  498 (645)
                      ||.++.||..+++....
T Consensus       478 dg~l~a~d~~tG~~l~~  494 (668)
T 1kv9_A          478 AGQMHAYSADKGEALWQ  494 (668)
T ss_dssp             TSEEEEEETTTCCEEEE
T ss_pred             cccchhhhhhcChhheE
Confidence            99999999999875443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.10  E-value=0.0015  Score=67.79  Aligned_cols=243  Identities=10%  Similarity=0.063  Sum_probs=138.2

Q ss_pred             cEEEEEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424          202 CIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  279 (645)
Q Consensus       202 ~V~~l~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (645)
                      .-..++|+|+  +..|..+...+.|+.+|..++.                                              
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~----------------------------------------------  173 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY----------------------------------------------  173 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE----------------------------------------------
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE----------------------------------------------
Confidence            4568899984  3344444444788888876532                                              


Q ss_pred             ceeeccCccCeEEEEEcCCCeEEEEeCCC-----cEEEEecCCCeE-EEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424          280 LQELHGHKGDVLDLAWSNSNYLLSCSMDK-----TVRMWQVGCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR  353 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~~l~s~s~dg-----~I~iwd~~~~~~-~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~  353 (645)
                      +..+.+.......+++++++.|+.+...+     .+...+...+.. ...+........++++|.+++++++-..++.|+
T Consensus       174 v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~  253 (433)
T 4hw6_A          174 VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMIS  253 (433)
T ss_dssp             EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEE
T ss_pred             EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEE
Confidence            22222334567899999987555554422     233333321111 011222234566788884555555555678899


Q ss_pred             EEeCCCCcE-EEee--ccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCC--cee-eeEEeec-cc--------cccC
Q 006424          354 IWGVCEKRV-VDWA--DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGN--DLK-LEKVDFH-DR--------KKTS  417 (645)
Q Consensus       354 vwd~~~~~~-~~~~--~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~--~~~-~~~~~~~-~~--------~~~~  417 (645)
                      .+|..++.. ..+.  ........++|+|+|+.|+++. ..+.|..++....  ... ...+.-. +.        ....
T Consensus       254 ~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~  333 (433)
T 4hw6_A          254 SYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGAR  333 (433)
T ss_dssp             EECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSB
T ss_pred             EEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceE
Confidence            999987765 2222  2222345799999999666665 4578888887532  111 0111100 00        0001


Q ss_pred             CCCeEEEEE---------cCCCCcEEEEEECCCeEEEEECCcceeeEeecCC----------------CCCeEEEEEe-c
Q 006424          418 GNKITGIQF---------SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK----------------SGSQMSASFT-T  471 (645)
Q Consensus       418 ~~~i~~i~~---------s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~----------------~~~i~~v~~s-p  471 (645)
                      -.....+++         .++| .++++-...+.|+.++.......+.+...                -.....++++ +
T Consensus       334 ~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~  412 (433)
T 4hw6_A          334 LWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK  412 (433)
T ss_dssp             CSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT
T ss_pred             EcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECC
Confidence            134567888         6665 56666666789999985433333333211                1246789999 5


Q ss_pred             CCCEEEEEeCCccEEEEeCC
Q 006424          472 TGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       472 ~~~~l~t~s~dg~I~iwd~~  491 (645)
                      +|.++++=..+++|+..+++
T Consensus       413 ~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          413 RKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTEEEEEEGGGTEEEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEecC
Confidence            66666665667788887764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.03  E-value=0.00064  Score=76.26  Aligned_cols=240  Identities=8%  Similarity=0.028  Sum_probs=130.0

Q ss_pred             cccC-cEEEEEEC-CCCCEEEEEeC-CC----cEEEEEcCCC-ceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          198 AHKG-CIWTLKFS-PDGRYLASGGE-DG----VVRIWHVTSV-AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       198 ~H~~-~V~~l~fs-pdg~~L~sgs~-Dg----~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      +|.- .+...+|| |||++||-+.. +|    .|+++|+.++ ...                                  
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l----------------------------------  215 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI----------------------------------  215 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----------------------------------
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----------------------------------
Confidence            3443 68899999 99998885543 33    4999999874 210                                  


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCC-----CcEEEEecCCCeE--EEEe--cCCCcEEEEEEeeCC
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCNQC--LNVF--DHHNYVTCVQFNPID  339 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~d-----g~I~iwd~~~~~~--~~~~--~~~~~v~~l~~~p~~  339 (645)
                             .   ..+.   .....++|+||+ .|+....|     ..|..+++.+++.  ...+  ........+.|+| +
T Consensus       216 -------~---~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-D  281 (751)
T 2xe4_A          216 -------A---DKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-D  281 (751)
T ss_dssp             -------C---CCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-T
T ss_pred             -------C---cccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-C
Confidence                   0   0011   113467899997 66655554     3688888877642  2233  2334567889999 9


Q ss_pred             CCEEEEEeC---CCcEEEEeCCCC--cE--EEeec-cCCCeEEEEEccCCCEEEEEe-cC--C--eEEEEEecCCceeee
Q 006424          340 DNYFISGSI---DGKVRIWGVCEK--RV--VDWAD-VRDVISAICYIPDGKGFIVGS-IT--G--TCHFYKASGNDLKLE  406 (645)
Q Consensus       340 ~~~l~s~s~---dg~i~vwd~~~~--~~--~~~~~-~~~~v~~l~~sp~g~~l~~g~-~d--g--~i~iwd~~~~~~~~~  406 (645)
                      +++|+..+.   ...|+++|+.++  ..  ..+.. ......++.|+. |+.|+..+ .+  +  .|..+++.+... ..
T Consensus       282 g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~  359 (751)
T 2xe4_A          282 TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD-WS  359 (751)
T ss_dssp             SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC-CC
T ss_pred             CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc-ce
Confidence            988776653   346888998875  33  33332 334455555543 55554443 33  2  566666553211 11


Q ss_pred             E-EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCe--EEEEEC-------Ccc--eeeEeecCCCCCeEEEEE----e
Q 006424          407 K-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--LRILDG-------VDV--IHKFKGLPKSGSQMSASF----T  470 (645)
Q Consensus       407 ~-~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~--I~iwd~-------~~~--~~~~~~~~~~~~i~~v~~----s  470 (645)
                      . +..+..    ...+..+.+.  +..++++...++.  |.++++       ...  ...+... ....+..+.+    +
T Consensus       360 ~~li~~~~----~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~-~~~~~~~~~~~~~~~  432 (751)
T 2xe4_A          360 HVLVDHSE----DVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVME-EPIFTVHLVESQMLE  432 (751)
T ss_dssp             CEEECCCS----SEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCC-CSSCEEEECGGGCCC
T ss_pred             eeEECCCC----CcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCC-CceeEEEeccCcccC
Confidence            1 111110    1234555555  3367777777875  445564       211  2222211 1122333332    3


Q ss_pred             cCCC-EEEEEeCC---ccEEEEeCCCCC
Q 006424          471 TTGK-HIISIGDD---CRVYVWNYDELC  494 (645)
Q Consensus       471 p~~~-~l~t~s~d---g~I~iwd~~~~~  494 (645)
                      +++. ++++.+..   +.++.+|+.+++
T Consensus       433 ~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          433 YEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             TTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             CCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            4554 44444432   568888887654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.02  E-value=0.0039  Score=62.74  Aligned_cols=197  Identities=10%  Similarity=-0.031  Sum_probs=125.2

Q ss_pred             CeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-
Q 006424          289 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-  367 (645)
Q Consensus       289 ~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-  367 (645)
                      ..+|.+..++..|+.+. ...|+..++..............+..++|++.++.++++-...+.|..+++.+.....+.. 
T Consensus        35 ~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  113 (349)
T 3v64_C           35 RRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  113 (349)
T ss_dssp             SSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             CCcccccccCceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence            34455555555554443 3568888887665555555555688999998344444554567889999998766544332 


Q ss_pred             cCCCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-CeEEE
Q 006424          368 VRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRI  445 (645)
Q Consensus       368 ~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-g~I~i  445 (645)
                      .......+++.+.+..|+.+ ...+.|.+.++.+.....  + ...    .......+++.|.+..++++-... +.|..
T Consensus       114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l-~~~----~l~~P~~iavdp~~g~ly~td~~~~~~I~r  186 (349)
T 3v64_C          114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--L-LWQ----SLEKPRAIALHPMEGTIYWTDWGNTPRIEA  186 (349)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--E-ECT----TCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--E-EeC----CCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence            23456789999865555444 456789999987654321  1 111    124568999999764555555555 78998


Q ss_pred             EECCcceeeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCC
Q 006424          446 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  493 (645)
Q Consensus       446 wd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~  493 (645)
                      ++.............-.....++++|++..|+.+. ..+.|..+|++..
T Consensus       187 ~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          187 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             EETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            88663322222222344678999998777666654 4678999998754

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.95  E-value=0.00075  Score=75.71  Aligned_cols=197  Identities=14%  Similarity=0.101  Sum_probs=110.4

Q ss_pred             cCcc-CeEEEEEc-CCC-eEE-EEeCCC----cEEEEecCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCC-----C
Q 006424          285 GHKG-DVLDLAWS-NSN-YLL-SCSMDK----TVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSID-----G  350 (645)
Q Consensus       285 ~h~~-~V~~l~~s-~~~-~l~-s~s~dg----~I~iwd~~~~-~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d-----g  350 (645)
                      +|.. .+...+|| ||| +|+ +.+.+|    +|+++|+.++ +.+.. ........+.|+| +++.|+....|     .
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGP-DHTSLFYVTKDETLREN  247 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECS-STTEEEEEEECTTCCEE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEec-CCCEEEEEEECCCCCCC
Confidence            3443 67889999 998 555 333333    4999999988 63211 0111234678999 88877776655     2


Q ss_pred             cEEEEeCCCCc---EEEee-ccCCCeEEEEEccCCCEEEEEec---CCeEEEEEecCCceee--eEEeeccccccCCCCe
Q 006424          351 KVRIWGVCEKR---VVDWA-DVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKI  421 (645)
Q Consensus       351 ~i~vwd~~~~~---~~~~~-~~~~~v~~l~~sp~g~~l~~g~~---dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~i  421 (645)
                      .|+++++.++.   ...+. ........+.|+|||++|+....   ...|.++|+.+.....  ..+ ...    .....
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l-~~~----~~~~~  322 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV-RPR----EKGVR  322 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES-SCC----CTTCC
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe-ecC----CCCce
Confidence            58888887753   22222 23345678899999999887663   3467788887642111  111 111    12344


Q ss_pred             EEEEEcCCCCcEEEEEECC----CeEEEEECCcc--eee-EeecCCCCCeEEEEEecCCCEEEEEeCCcc--EEEEeC
Q 006424          422 TGIQFSRDESQRIMITSED----SKLRILDGVDV--IHK-FKGLPKSGSQMSASFTTTGKHIISIGDDCR--VYVWNY  490 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~d----g~I~iwd~~~~--~~~-~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~--I~iwd~  490 (645)
                      .++.|+.+ ..+++.+..+    ..|..+|....  ... +........+..+.+. .+.++++...+|.  |+++++
T Consensus       323 ~s~~~~~g-~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          323 YDVQMHGT-SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEETT-TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEeeeeC-CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            55555444 3555555554    36777776532  122 2221111234455553 2344556666775  455564

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.93  E-value=0.0043  Score=61.48  Aligned_cols=179  Identities=8%  Similarity=-0.069  Sum_probs=113.5

Q ss_pred             CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC----CcEEEee-ccCCCeEEEEEccCCC
Q 006424          308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----KRVVDWA-DVRDVISAICYIPDGK  382 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~----~~~~~~~-~~~~~v~~l~~sp~g~  382 (645)
                      ..|+..|+.+.+..........+.+++|++.++.++++-..++.|..+++.+    .....+. ..-.....+++++.+.
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            5688889887766666655567889999983344445555568899999876    2222222 2224568899987665


Q ss_pred             EEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-CeEEEEECCcceeeEeecCC
Q 006424          383 GFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGLPK  460 (645)
Q Consensus       383 ~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-g~I~iwd~~~~~~~~~~~~~  460 (645)
                      .|+.+ ...+.|.++++.+..... ... ..     ......+++.|.+..++++.... +.|...+.............
T Consensus        90 ~ly~~d~~~~~I~~~~~~g~~~~~-~~~-~~-----~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~  162 (316)
T 1ijq_A           90 NIYWTDSVLGTVSVADTKGVKRKT-LFR-EN-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN  162 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEE-EEE-CT-----TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred             eEEEEECCCCEEEEEeCCCCceEE-EEE-CC-----CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECC
Confidence            55544 567899999987654321 111 11     24678999998763444444333 78888886532222222223


Q ss_pred             CCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCC
Q 006424          461 SGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  493 (645)
Q Consensus       461 ~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~  493 (645)
                      -.....++++|++..|+.+. ..+.|..+|++..
T Consensus       163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            45678999999877776655 5679999999754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.92  E-value=0.0047  Score=63.11  Aligned_cols=195  Identities=10%  Similarity=-0.027  Sum_probs=123.9

Q ss_pred             EEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec-cC
Q 006424          291 LDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VR  369 (645)
Q Consensus       291 ~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~  369 (645)
                      .|.+..+..+|+.+. ...|+..++..............+..++|++.++.++++-...+.|+.+++.+.....+.. ..
T Consensus        80 ~C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~  158 (386)
T 3v65_B           80 SCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL  158 (386)
T ss_dssp             CEEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred             eECCccccceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence            344444445554443 3678888988766555555556688999998344455555567889999998876554432 23


Q ss_pred             CCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-CeEEEEE
Q 006424          370 DVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILD  447 (645)
Q Consensus       370 ~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-g~I~iwd  447 (645)
                      .....+++++.+..|+.. ...+.|.+.++.+.....  + ...    .......+++.|.+..++++-... +.|..++
T Consensus       159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~--l-~~~----~l~~P~giavdp~~g~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--L-LWQ----SLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE--E-ECS----SCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE--e-ecC----CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence            356778898866555544 456788888876544221  1 111    124578999998764555555555 7898888


Q ss_pred             CCcceeeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCC
Q 006424          448 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  493 (645)
Q Consensus       448 ~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~  493 (645)
                      .............-.....++|+|++..|+.+. ..+.|..+|++..
T Consensus       232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            764332222222345678999998777666554 5678999998754

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=0.0059  Score=63.70  Aligned_cols=205  Identities=8%  Similarity=0.039  Sum_probs=119.3

Q ss_pred             cCeEEEEE-------cCCC-eEEEEeCCC-------cEEEEecCC-CeEE-----EEecCCCcEEEEEEeeCCCCEEEEE
Q 006424          288 GDVLDLAW-------SNSN-YLLSCSMDK-------TVRMWQVGC-NQCL-----NVFDHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       288 ~~V~~l~~-------s~~~-~l~s~s~dg-------~I~iwd~~~-~~~~-----~~~~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                      .....++|       ++++ .|+.+...+       .|.+.+... +...     ..+..-.....++++|.++.++++-
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd  265 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS  265 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEE
Confidence            35788999       8887 566666554       255665333 2221     1221112345678898555566666


Q ss_pred             eCCCcEEEEeCC-------CCcE--------------EEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCcee
Q 006424          347 SIDGKVRIWGVC-------EKRV--------------VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLK  404 (645)
Q Consensus       347 s~dg~i~vwd~~-------~~~~--------------~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~  404 (645)
                      ..++.|..+|+.       ++..              +.........+.++|+|+|+.|+++. ....|+.++.......
T Consensus       266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~  345 (496)
T 3kya_A          266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE  345 (496)
T ss_dssp             TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence            677889999987       4443              11222345578999999999766664 5678888776543211


Q ss_pred             e---eEEeec-ccc--------ccCCCCeE-EEEEc-------CCCCcEEEEEECCCeEEEEECCcceeeEeecCC----
Q 006424          405 L---EKVDFH-DRK--------KTSGNKIT-GIQFS-------RDESQRIMITSEDSKLRILDGVDVIHKFKGLPK----  460 (645)
Q Consensus       405 ~---~~~~~~-~~~--------~~~~~~i~-~i~~s-------~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~----  460 (645)
                      .   ..+.-. +..        ...-.... .+...       ++| .++++=...++|+.++......++.+...    
T Consensus       346 ~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~  424 (496)
T 3kya_A          346 FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSL  424 (496)
T ss_dssp             ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECTTCBEEEEEESCTTHHH
T ss_pred             ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeCCCCEEEEecccccccc
Confidence            1   111110 100        00112233 44443       344 56666667789999985544445544211    


Q ss_pred             ------------------CCCeEEEEEecC-CCEEEEEeCCccEEEEeCCCC
Q 006424          461 ------------------SGSQMSASFTTT-GKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       461 ------------------~~~i~~v~~sp~-~~~l~t~s~dg~I~iwd~~~~  493 (645)
                                        -.....++++++ +.++++=+.+.+|+.++++..
T Consensus       425 ~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          425 ADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             HHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             cCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence                              124678999997 666666667789999998765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.92  E-value=0.0016  Score=70.34  Aligned_cols=198  Identities=9%  Similarity=0.008  Sum_probs=116.0

Q ss_pred             CCeEEEEe------CCCcEEEEecCCCeEEEEecCCCcE---------------------------------------EE
Q 006424          298 SNYLLSCS------MDKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TC  332 (645)
Q Consensus       298 ~~~l~s~s------~dg~I~iwd~~~~~~~~~~~~~~~v---------------------------------------~~  332 (645)
                      ++.++.++      .++.|+.+|.++|+.+-.+......                                       ..
T Consensus       166 ~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~  245 (599)
T 1w6s_A          166 KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGW  245 (599)
T ss_dssp             TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSC
T ss_pred             CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccc
Confidence            45566555      3799999999999988776422211                                       13


Q ss_pred             EEEeeCCCCEEEEEeCC----------------CcEEEEeCCCCcEEEeec---cCC-------CeEEEEEc-cCC---C
Q 006424          333 VQFNPIDDNYFISGSID----------------GKVRIWGVCEKRVVDWAD---VRD-------VISAICYI-PDG---K  382 (645)
Q Consensus       333 l~~~p~~~~~l~s~s~d----------------g~i~vwd~~~~~~~~~~~---~~~-------~v~~l~~s-p~g---~  382 (645)
                      +++.+ ..++++.+..+                +.|..+|.++++.+-...   |..       ...-+... .+|   .
T Consensus       246 ~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~  324 (599)
T 1w6s_A          246 YAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK  324 (599)
T ss_dssp             CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred             eeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence            45666 66777777655                379999999998764322   211       11112222 467   4


Q ss_pred             EEEEEecCCeEEEEEecCCceeeeEEeecccc------c-cCCC--------------------------CeEEEEEcCC
Q 006424          383 GFIVGSITGTCHFYKASGNDLKLEKVDFHDRK------K-TSGN--------------------------KITGIQFSRD  429 (645)
Q Consensus       383 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~------~-~~~~--------------------------~i~~i~~s~~  429 (645)
                      .++.++.+|.++++|..+++..... .+....      . ....                          .-..++++|+
T Consensus       325 ~v~~~~~~G~l~~lD~~tG~~lw~~-~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  403 (599)
T 1w6s_A          325 LLTHPDRNGIVYTLDRTDGALVSAN-KLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK  403 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEE-ESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEECCCcEEEEEECCCCCEeecc-cccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence            6777889999999999887764331 111000      0 0000                          0123556666


Q ss_pred             CCcEEEEEE---------------------------------------CCCeEEEEECCcceeeEeecCCCCCeEEEEEe
Q 006424          430 ESQRIMITS---------------------------------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFT  470 (645)
Q Consensus       430 g~~~l~~~s---------------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~s  470 (645)
                      . .++++..                                       .+|.|.-||..+.....+... ..+..+-...
T Consensus       404 ~-~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~  481 (599)
T 1w6s_A          404 R-ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMA  481 (599)
T ss_dssp             T-TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEE
T ss_pred             C-CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceE
Confidence            4 3443321                                       346778888765444333311 1111111123


Q ss_pred             cCCCEEEEEeCCccEEEEeCCCCCcCCCc
Q 006424          471 TTGKHIISIGDDCRVYVWNYDELCFPSSK  499 (645)
Q Consensus       471 p~~~~l~t~s~dg~I~iwd~~~~~~~~~~  499 (645)
                      ..+.+++.++.||.++.||.++++..+..
T Consensus       482 tagg~vf~gt~dg~l~A~D~~tG~~lW~~  510 (599)
T 1w6s_A          482 TAGDLVFYGTLDGYLKARDSDTGDLLWKF  510 (599)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence            35778888999999999999999765544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.90  E-value=0.019  Score=58.91  Aligned_cols=201  Identities=11%  Similarity=-0.031  Sum_probs=126.5

Q ss_pred             CccCeEEEEEcCC-CeEE-EEeCCCcEEEEecCCC----eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424          286 HKGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  358 (645)
Q Consensus       286 h~~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~~----~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  358 (645)
                      ....+..++|++. +.|+ +-...+.|+.+++...    ....... .......+++.+..++++++-...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            4456889999974 5555 4455688988988652    2222332 344678889987455555665667889999998


Q ss_pred             CCcEEEeec-cCCCeEEEEEccCCCEEEEEec--CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          359 EKRVVDWAD-VRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       359 ~~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      +.....+.. .-.....++++|.+..|+....  .+.|...++.+......   ...    .-.....+++++++..+++
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~---~~~----~l~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL---VTE----NIQWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE---ECS----SCSCEEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE---EEC----CCCceEEEEEEeCCCEEEE
Confidence            776554433 4456889999997777766653  36788888876543221   111    1246789999987645555


Q ss_pred             EEECCCeEEEEECCcc-eeeEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          436 ITSEDSKLRILDGVDV-IHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~~-~~~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      +-+..+.|..+|.... ...+. .........++++. .+.++++-...+.|..+|..++.
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred             EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence            5566789999997632 22222 21223455677773 34455565667889999866653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.89  E-value=0.011  Score=58.55  Aligned_cols=198  Identities=7%  Similarity=-0.055  Sum_probs=126.2

Q ss_pred             cCeEEEEEcCC-CeE-EEEeCCCcEEEEecCCCeEE-EEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEE
Q 006424          288 GDVLDLAWSNS-NYL-LSCSMDKTVRMWQVGCNQCL-NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV  363 (645)
Q Consensus       288 ~~V~~l~~s~~-~~l-~s~s~dg~I~iwd~~~~~~~-~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~  363 (645)
                      ....+++|++. +.| .+-...+.|..+++..+... ..+ ..-.....+++.+..++++++-...+.|.++++.+....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            35678899874 544 45556788999998765321 111 222346778888745555566566788999998875544


Q ss_pred             Eee-ccCCCeEEEEEccCCCEEEEEec--CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424          364 DWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  440 (645)
Q Consensus       364 ~~~-~~~~~v~~l~~sp~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d  440 (645)
                      .+. ........++++|.+..|+.+..  .+.|..+++.+.....  +....     -.....+++++++..++++-+..
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~~~-----l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--IINSE-----IYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE--EECSS-----CSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE--EEECC-----CCCccEEEEeccCCEEEEEECCC
Confidence            332 44456789999997767766653  5788888877543221  11111     24568999999764566666667


Q ss_pred             CeEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          441 SKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       441 g~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      +.|..+|... ....+. ........++++.. +..+.+-...+.|..++..++.
T Consensus       188 ~~I~~~d~dG~~~~~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          188 NFIHKSNLDGTNRQAVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             TEEEEEETTSCSCEEEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             CEEEEEcCCCCceEEEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence            8999999763 222222 22345667888753 4455555567899999987664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.80  E-value=0.035  Score=55.11  Aligned_cols=190  Identities=9%  Similarity=0.042  Sum_probs=103.1

Q ss_pred             ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec----CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE
Q 006424          287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  362 (645)
Q Consensus       287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~----~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~  362 (645)
                      ...+.++.|.+ +.++.++.++.|.. ..+.|+.-....    +...+..+.+.+ ++..++++ .++.|..- ...++.
T Consensus        79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSS
T ss_pred             CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCC
Confidence            34678888876 44444555665443 223343322221    334577888776 56555554 46654332 222322


Q ss_pred             E-E-eeccCCCeEEEEEccCCCEEEEEecCCeEEE-EEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424          363 V-D-WADVRDVISAICYIPDGKGFIVGSITGTCHF-YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  439 (645)
Q Consensus       363 ~-~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~  439 (645)
                      - . .......+..+.+.+++.+++++. +|.+.. .|-......  .....     ....+..+.+.+++ . ++.++.
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~--~~~~~-----~~~~~~~~~~~~~g-~-~~~~~~  223 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWE--PHNRT-----TSRRLHNMGFTPDG-R-LWMIVN  223 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCE--EEECC-----SSSCEEEEEECTTS-C-EEEEET
T ss_pred             CEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCcee--ECCCC-----CCCccceeEECCCC-C-EEEEeC
Confidence            2 1 223455788999999988877665 444433 332122221  11111     13568889999986 4 445667


Q ss_pred             CCeEEEEECC--cceeeEeec--CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          440 DSKLRILDGV--DVIHKFKGL--PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       440 dg~I~iwd~~--~~~~~~~~~--~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +|.+++.+..  ..-......  .....+..+.+.+++..++++. +|.| .+..+.+
T Consensus       224 ~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG  279 (327)
T 2xbg_A          224 GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG  279 (327)
T ss_dssp             TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT
T ss_pred             CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC
Confidence            8888877421  111111111  1234588999998887777654 6766 4555555

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.80  E-value=0.0056  Score=66.17  Aligned_cols=147  Identities=13%  Similarity=0.049  Sum_probs=84.1

Q ss_pred             CcEEEEeCCCCcEEEeec---cCC-------CeEEEEEc-cCCC---EEEEEecCCeEEEEEecCCceeeeEEeecccc-
Q 006424          350 GKVRIWGVCEKRVVDWAD---VRD-------VISAICYI-PDGK---GFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-  414 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~---~~~-------~v~~l~~s-p~g~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-  414 (645)
                      +.|..+|..+++.+-...   |..       ...-+... .+|+   .++.++.+|.++++|..+++.... ..+.... 
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~-~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNA-FPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEE-EESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecc-cccccCcc
Confidence            579999999998775332   211       11112221 4674   788899999999999988775432 1111100 


Q ss_pred             ------------------c---------cCCC-----------CeEEEEEcCCCCcEEEEEE------------------
Q 006424          415 ------------------K---------TSGN-----------KITGIQFSRDESQRIMITS------------------  438 (645)
Q Consensus       415 ------------------~---------~~~~-----------~i~~i~~s~~g~~~l~~~s------------------  438 (645)
                                        .         ....           .-..++++|+. .++++..                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~-g~~yv~~~~~~~~~~~~~~~~~~g~  448 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDT-GLFYVPANHWKEDYWTEEVSYTKGS  448 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTT-CCEEEEEECEEEEEEECCCCCCTTS
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCC-CEEEEechhcceeeecccccccCCC
Confidence                              0         0000           01134666664 2333322                  


Q ss_pred             ---------------CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCc
Q 006424          439 ---------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK  499 (645)
Q Consensus       439 ---------------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~  499 (645)
                                     .+|.|.-||..+.....+.... .++..-.....+.+++.++.||.++.||.++++.....
T Consensus       449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence                           2578888997755444333211 12222122235778888999999999999999765544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.78  E-value=0.015  Score=55.01  Aligned_cols=203  Identities=11%  Similarity=0.120  Sum_probs=123.0

Q ss_pred             cccccccCcEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      +.+.+-.+.+..++|+|++..|+ +...++.|...|.. +..                                      
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v--------------------------------------   60 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL--------------------------------------   60 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE--------------------------------------
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE--------------------------------------
Confidence            44666667899999999876554 56677888888876 322                                      


Q ss_pred             eeccCCCceeec-cCccCeEEEEEcCCCeE-EEEeCCCcEEEEecCCCeE---EEEe-------cCCCcEEEEEEeeCCC
Q 006424          273 FQIEESPLQELH-GHKGDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQC---LNVF-------DHHNYVTCVQFNPIDD  340 (645)
Q Consensus       273 ~~~~~~~~~~l~-~h~~~V~~l~~s~~~~l-~s~s~dg~I~iwd~~~~~~---~~~~-------~~~~~v~~l~~~p~~~  340 (645)
                             ++.+. +-....-.+++.+++.+ ++.-.++.+.++++.....   +...       ..+.....++|+| .+
T Consensus        61 -------~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~  132 (255)
T 3qqz_A           61 -------IRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QD  132 (255)
T ss_dssp             -------EEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TT
T ss_pred             -------EEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CC
Confidence                   12221 11245667788777744 5555677888888764432   2222       1334568999999 67


Q ss_pred             CEEEEEeCCCcEEEEeCCC----CcEEEee-------ccCCCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEE
Q 006424          341 NYFISGSIDGKVRIWGVCE----KRVVDWA-------DVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKV  408 (645)
Q Consensus       341 ~~l~s~s~dg~i~vwd~~~----~~~~~~~-------~~~~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~  408 (645)
                      +.|+++.......+|.+..    .......       .....+.+++++|... +++.......+..+|....  .....
T Consensus       133 ~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~  210 (255)
T 3qqz_A          133 HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEM  210 (255)
T ss_dssp             TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEE
T ss_pred             CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEE
Confidence            6666666655555555431    1111110       1234578999999654 5555666778888887765  23333


Q ss_pred             eeccccc---cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424          409 DFHDRKK---TSGNKITGIQFSRDESQRIMITSEDSKLRILD  447 (645)
Q Consensus       409 ~~~~~~~---~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd  447 (645)
                      .+.....   ..-...-.|+|.++| + |+..++.+.++.+.
T Consensus       211 ~L~~g~~~l~~~~~qpEGia~d~~G-~-lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          211 SLTKGSRGLSHNIKQAEGVAMDASG-N-IYIVSEPNRFYRFT  250 (255)
T ss_dssp             ECSTTGGGCSSCCCSEEEEEECTTC-C-EEEEETTTEEEEEE
T ss_pred             EcCCccCCcccccCCCCeeEECCCC-C-EEEEcCCceEEEEE
Confidence            3332110   011356789999998 4 55558888777775

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.74  E-value=0.0014  Score=68.06  Aligned_cols=157  Identities=11%  Similarity=0.119  Sum_probs=102.1

Q ss_pred             cEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC-C----eEEEEEecCCce
Q 006424          329 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G----TCHFYKASGNDL  403 (645)
Q Consensus       329 ~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d-g----~i~iwd~~~~~~  403 (645)
                      ....++++|.++..|+++...+.|+.+|+.++.+..+.........++|+++|+.|+++... +    .+..++......
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~  217 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK  217 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence            45788998721344555555588999999988877766666778999999999977776642 1    344444333221


Q ss_pred             eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee-eEeecCCCCCeEEEEEecCCCEEEEE-eC
Q 006424          404 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISI-GD  481 (645)
Q Consensus       404 ~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~i~~v~~sp~~~~l~t~-s~  481 (645)
                      ....+.  .     ......++++|++..++++-..++.|..++...... .+...........++|+|+|++|+.+ ..
T Consensus       218 ~~~~l~--~-----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          218 VITELT--K-----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             SEEEEE--E-----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             eeeeec--c-----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence            111111  1     134567889994336666666788999999764433 22222233457899999999955544 56


Q ss_pred             CccEEEEeCCC
Q 006424          482 DCRVYVWNYDE  492 (645)
Q Consensus       482 dg~I~iwd~~~  492 (645)
                      .++|+.++++.
T Consensus       291 ~~~I~~~~~d~  301 (430)
T 3tc9_A          291 QHYILRSDYDW  301 (430)
T ss_dssp             TTEEEEEEEET
T ss_pred             CCEEEEEeCCc
Confidence            78999988764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.74  E-value=0.013  Score=57.28  Aligned_cols=204  Identities=8%  Similarity=0.092  Sum_probs=126.8

Q ss_pred             cCccCeEEEEEcCC-CeEEEEe-CCCcEEEEecCCCeEEEE-ecC-------CCcEEEEEE---eeCCCCEEEEEeC---
Q 006424          285 GHKGDVLDLAWSNS-NYLLSCS-MDKTVRMWQVGCNQCLNV-FDH-------HNYVTCVQF---NPIDDNYFISGSI---  348 (645)
Q Consensus       285 ~h~~~V~~l~~s~~-~~l~s~s-~dg~I~iwd~~~~~~~~~-~~~-------~~~v~~l~~---~p~~~~~l~s~s~---  348 (645)
                      .....--++.|++. +.++.++ ..++|..||...+..... +..       ...+..+.|   .| ++.++++...   
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~a   88 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKS   88 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccc
Confidence            33444456789864 5666555 789999999986644333 322       114689999   68 6767765442   


Q ss_pred             ----------CCcEEEEeCC---CCcEEEeec--------------cCCCeEEEEEccCCCEEEEEecC-CeEEEEEecC
Q 006424          349 ----------DGKVRIWGVC---EKRVVDWAD--------------VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASG  400 (645)
Q Consensus       349 ----------dg~i~vwd~~---~~~~~~~~~--------------~~~~v~~l~~sp~g~~l~~g~~d-g~i~iwd~~~  400 (645)
                                +..|..||+.   +++.+....              .......++..++|+..++++.. +.|..++...
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence                      5779999999   665543222              11247899999999999988888 8877777765


Q ss_pred             CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee-eEeec--C---CCCCeEEE-EEecCC
Q 006424          401 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGL--P---KSGSQMSA-SFTTTG  473 (645)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~--~---~~~~i~~v-~~sp~~  473 (645)
                      .....  +.............+.|+++|+| ..|++....+.+..+|+..... .+...  .   .-.....+ ..-.+|
T Consensus       169 ~~~~~--~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G  245 (334)
T 2p9w_A          169 KTVST--FAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGN  245 (334)
T ss_dssp             CCEEE--EEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETT
T ss_pred             CEEee--eeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCC
Confidence            53322  21111111123457799999998 5666665599999999875433 12111  1   11223443 333477


Q ss_pred             CE-EEEEeCCccEEEEeCCC
Q 006424          474 KH-IISIGDDCRVYVWNYDE  492 (645)
Q Consensus       474 ~~-l~t~s~dg~I~iwd~~~  492 (645)
                      +. |++.+..+.+.+.+-+.
T Consensus       246 ~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          246 ESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEEEETTEEEEEECSST
T ss_pred             EEEEEEcCCCCEEEEECCCC
Confidence            77 55555667666666544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.74  E-value=0.0065  Score=65.54  Aligned_cols=149  Identities=9%  Similarity=-0.030  Sum_probs=90.0

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCC-----cEEE-EEEeeCCCCEEEEEeC------CCcEEEEeCCCCcEEEe
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTC-VQFNPIDDNYFISGSI------DGKVRIWGVCEKRVVDW  365 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----~v~~-l~~~p~~~~~l~s~s~------dg~i~vwd~~~~~~~~~  365 (645)
                      ++.++.++.|+.+..+|..+|+.+-.+....     .+.+ ....  + ..+++++.      ++.|+.+|..+++.+-.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--C-CEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            4688888999999999999999887764222     2221 1121  3 45555554      78999999999887643


Q ss_pred             eccCCCe---------------------------------------EEEEEccCCCEEEEEecC----------------
Q 006424          366 ADVRDVI---------------------------------------SAICYIPDGKGFIVGSIT----------------  390 (645)
Q Consensus       366 ~~~~~~v---------------------------------------~~l~~sp~g~~l~~g~~d----------------  390 (645)
                      .......                                       ..+++.++...++.++.+                
T Consensus       192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~  271 (571)
T 2ad6_A          192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence            2221110                                       235667776777777642                


Q ss_pred             CeEEEEEecCCceeeeEEeecccc----ccCCCCeEEEEEcCCCC--cEEEEEECCCeEEEEECCcc
Q 006424          391 GTCHFYKASGNDLKLEKVDFHDRK----KTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVDV  451 (645)
Q Consensus       391 g~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~i~~i~~s~~g~--~~l~~~s~dg~I~iwd~~~~  451 (645)
                      +.|..+|..+++..-. .....+.    .....++. +....+|.  ..++.++.+|.++++|..+.
T Consensus       272 ~~v~Ald~~tG~~~W~-~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG  336 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWG-YQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENG  336 (571)
T ss_dssp             TEEEEEETTTCCEEEE-EESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTC
T ss_pred             EEEEEEecCCCcEEEE-ecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCC
Confidence            3588999988775432 2221110    01112222 22224552  25677888999999997644

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.72  E-value=0.025  Score=57.87  Aligned_cols=187  Identities=9%  Similarity=-0.045  Sum_probs=118.4

Q ss_pred             CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC----cEEEe-eccCCCeE
Q 006424          299 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----RVVDW-ADVRDVIS  373 (645)
Q Consensus       299 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~----~~~~~-~~~~~~v~  373 (645)
                      .+|+.+. ...|+..++..............+..++|++.++.++++-...+.|+.+++.+.    ....+ ........
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            3444444 368888998877665556666778999999834444444445678999998762    22232 22445678


Q ss_pred             EEEEccCCCEEEE-EecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC-CCeEEEEECCcc
Q 006424          374 AICYIPDGKGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVDV  451 (645)
Q Consensus       374 ~l~~sp~g~~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~-dg~I~iwd~~~~  451 (645)
                      .+++.+.+..|+. -...+.|.+.++.+...... +. ..     ......+++.|.+..++.+-.. .+.|...++...
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l-~~-~~-----~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~  235 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-FR-EN-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  235 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE-EE-CS-----SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEE-Ee-CC-----CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence            8999985555554 45577899888876543222 11 11     2457899999975344444323 378888887633


Q ss_pred             eeeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCC
Q 006424          452 IHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  493 (645)
Q Consensus       452 ~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~  493 (645)
                      .........-.....+++++++..|+.+. ..+.|..+|++..
T Consensus       236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            22222222345789999999887777664 4678999998764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.71  E-value=0.0023  Score=66.41  Aligned_cols=155  Identities=9%  Similarity=0.012  Sum_probs=96.4

Q ss_pred             CeEEEEEcCC---CeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC---C-cEEEEeCCCCc
Q 006424          289 DVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---G-KVRIWGVCEKR  361 (645)
Q Consensus       289 ~V~~l~~s~~---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d---g-~i~vwd~~~~~  361 (645)
                      ....++|+++   +.|+.+...+.|+.+|..++..............+++++ +++++++....   . .+..++...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4568899984   677777666899999998888776666556789999999 88844443311   1 23333332221


Q ss_pred             E-EEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424          362 V-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  439 (645)
Q Consensus       362 ~-~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~  439 (645)
                      . ............++++| +|.+.++-..++.|+.+|..+............     ...-..++|+|+|..++++-..
T Consensus       219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-----~~~~~~ia~dpdG~~LYvad~~  293 (433)
T 4hw6_A          219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-----KGSNFHIVWHPTGDWAYIIYNG  293 (433)
T ss_dssp             CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-----CSSCEEEEECTTSSEEEEEETT
T ss_pred             eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-----CCCcccEEEeCCCCEEEEEeCC
Confidence            1 01111234456788999 666555555677899998875544122111111     1223479999998435555566


Q ss_pred             CCeEEEEECC
Q 006424          440 DSKLRILDGV  449 (645)
Q Consensus       440 dg~I~iwd~~  449 (645)
                      .+.|+.++..
T Consensus       294 ~~~I~~~~~d  303 (433)
T 4hw6_A          294 KHCIYRVDYN  303 (433)
T ss_dssp             TTEEEEEEBC
T ss_pred             CCEEEEEeCC
Confidence            7899998854

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.58  E-value=0.018  Score=62.24  Aligned_cols=146  Identities=15%  Similarity=0.108  Sum_probs=89.0

Q ss_pred             EEEEeCCCcEEEEecCCCeEEEEecCCC-----cEEE-EEEeeCCCCEEEEEe------CCCcEEEEeCCCCcEEEeecc
Q 006424          301 LLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTC-VQFNPIDDNYFISGS------IDGKVRIWGVCEKRVVDWADV  368 (645)
Q Consensus       301 l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----~v~~-l~~~p~~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~~  368 (645)
                      ++.++.|+.|..+|..+|+.+-......     .+.+ ..+.  ++ .+++++      .++.|+.+|.++++.+-....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            8889999999999999999887664221     2221 1121  34 455554      379999999999887643222


Q ss_pred             CCCe---------------------------------------EEEEEccCCCEEEEEecCC----------------eE
Q 006424          369 RDVI---------------------------------------SAICYIPDGKGFIVGSITG----------------TC  393 (645)
Q Consensus       369 ~~~v---------------------------------------~~l~~sp~g~~l~~g~~dg----------------~i  393 (645)
                      ....                                       ..+++.++...++.++.++                .|
T Consensus       201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv  280 (599)
T 1w6s_A          201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (599)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence            1111                                       1356667777888887653                78


Q ss_pred             EEEEecCCceeeeEEeeccccc----cCCCCeEEEEEc-CCCC--cEEEEEECCCeEEEEECCcc
Q 006424          394 HFYKASGNDLKLEKVDFHDRKK----TSGNKITGIQFS-RDES--QRIMITSEDSKLRILDGVDV  451 (645)
Q Consensus       394 ~iwd~~~~~~~~~~~~~~~~~~----~~~~~i~~i~~s-~~g~--~~l~~~s~dg~I~iwd~~~~  451 (645)
                      .-+|..+++..-. .....+..    ....++. +... .+|.  ..++.++.+|.++++|..+.
T Consensus       281 ~Ald~~TG~~~W~-~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG  343 (599)
T 1w6s_A          281 FGRDADTGEAKFG-YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDG  343 (599)
T ss_dssp             EEEETTTCCEEEE-EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             EEEeCCCCceeeE-eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCC
Confidence            8999988876432 22211100    0111222 2222 3442  35777889999999997643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.56  E-value=0.035  Score=54.73  Aligned_cols=183  Identities=11%  Similarity=0.193  Sum_probs=117.3

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCC----CC---EEEEEe-C--CCcEEEEeC--CCCcEEEeec
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID----DN---YFISGS-I--DGKVRIWGV--CEKRVVDWAD  367 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~----~~---~l~s~s-~--dg~i~vwd~--~~~~~~~~~~  367 (645)
                      .++.....+-+.+||+ +|+.+..+.. +.++.+..-| +    ++   ++++.. .  +++|.+|++  .++.+.....
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            6777777889999999 7888888754 5677777766 2    11   223333 3  578999966  4555444421


Q ss_pred             ------cC-CCeEEEEE--ccC-CC-EEEEEecCCeEEEEEecC---CceeeeEEe-eccccccCCCCeEEEEEcCCCCc
Q 006424          368 ------VR-DVISAICY--IPD-GK-GFIVGSITGTCHFYKASG---NDLKLEKVD-FHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       368 ------~~-~~v~~l~~--sp~-g~-~l~~g~~dg~i~iwd~~~---~~~~~~~~~-~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                            .. ..+..+|+  +|. ++ ++++...+|.+..|++..   .....+.+. +.-     ...+-.+...+.. .
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-----gsq~EgcvvDd~~-g  192 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-----NSQTEGMAADDEY-G  192 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-----SSCEEEEEEETTT-T
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-----CCCcceEEEcCCC-C
Confidence                  22 56777888  774 44 688888999999999843   212222111 111     2567788888775 6


Q ss_pred             EEEEEECCCeEEEEECC--c--ceeeEee---cCCCCCeEEEEE--ecCCC-EEEEEe-CCccEEEEeCC
Q 006424          433 RIMITSEDSKLRILDGV--D--VIHKFKG---LPKSGSQMSASF--TTTGK-HIISIG-DDCRVYVWNYD  491 (645)
Q Consensus       433 ~l~~~s~dg~I~iwd~~--~--~~~~~~~---~~~~~~i~~v~~--sp~~~-~l~t~s-~dg~I~iwd~~  491 (645)
                      .|+.+-++..|..++..  .  .......   ..-...+..|++  .++++ +|++++ .+.+..+||..
T Consensus       193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            89999999777777754  1  1111211   112246888888  45555 666666 56799999986

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.53  E-value=0.028  Score=61.03  Aligned_cols=200  Identities=7%  Similarity=-0.073  Sum_probs=117.6

Q ss_pred             ccCeEEEEEcCC-CeEEEE-eCCCcEEEEecCCCeE-EEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE
Q 006424          287 KGDVLDLAWSNS-NYLLSC-SMDKTVRMWQVGCNQC-LNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV  362 (645)
Q Consensus       287 ~~~V~~l~~s~~-~~l~s~-s~dg~I~iwd~~~~~~-~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~  362 (645)
                      -.....++|++. +.|+-+ ...+.|..++++.... ...+. .-.....+++.+..++++++-...+.|.+.++.+...
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            345678899874 555544 4467888888875432 22232 2256889999983444555555678999999987654


Q ss_pred             EEee-ccCCCeEEEEEccCCCEEEEEec--CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC
Q 006424          363 VDWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE  439 (645)
Q Consensus       363 ~~~~-~~~~~v~~l~~sp~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~  439 (645)
                      ..+. ..-.....|+++|.+..|+....  .+.|...++.+......   ...    .......+++++++..++++-..
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l---~~~----~~~~P~Glald~~~~~LY~aD~~  191 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII---INS----EIYWPNGLTLDYEEQKLYWADAK  191 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE---ECS----SCSSEEEEEEETTTTEEEEEETT
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE---EeC----CCCCCcEEEEEccCCEEEEEeCC
Confidence            4433 34456788999997666666553  35677677665433211   111    12467899999876455666566


Q ss_pred             CCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          440 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       440 dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      .+.|..+|..................++++..+ ...++-...+.|...|..++.
T Consensus       192 ~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             TCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred             CCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence            788999887632221111111222346666544 344444456788888887664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.52  E-value=0.12  Score=57.70  Aligned_cols=201  Identities=11%  Similarity=-0.022  Sum_probs=122.8

Q ss_pred             CccCeEEEEEcCC-CeE-EEEeCCCcEEEEecCCC----eEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424          286 HKGDVLDLAWSNS-NYL-LSCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  358 (645)
Q Consensus       286 h~~~V~~l~~s~~-~~l-~s~s~dg~I~iwd~~~~----~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  358 (645)
                      ....+..++|++. +.| ++-...+.|+.+++...    .....+. .......|++.+..++++++-...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            4456788999874 544 45555678888888742    2222333 334567889987344566666667899999998


Q ss_pred             CCcEEEee-ccCCCeEEEEEccCCCEEEEEec--CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          359 EKRVVDWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       359 ~~~~~~~~-~~~~~v~~l~~sp~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      +.....+. ..-.....|+++|.+.+|+....  .+.|...++.+......   ...    .......|++.+.+..+++
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l---v~~----~l~~P~GLavD~~~~~LYw  574 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL---VTE----NIQWPNGITLDLLSGRLYW  574 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE---ECS----SCSCEEEEEEETTTTEEEE
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE---EeC----CCCCceEEEEecCCCeEEE
Confidence            76655543 33456889999998767766653  26788888876543221   111    1246789999977645555


Q ss_pred             EEECCCeEEEEECCcc-eeeE-eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          436 ITSEDSKLRILDGVDV-IHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~~-~~~~-~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      +-...+.|...++... ...+ ..........+|++.. +.++++-...+.|...|..++.
T Consensus       575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCc
Confidence            5556678999997632 2222 2211223455676643 2344444456788888866653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.51  E-value=0.03  Score=55.28  Aligned_cols=179  Identities=9%  Similarity=-0.060  Sum_probs=111.0

Q ss_pred             CCcEEEEecCCCe--EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE--EEeeccCCCeEEEEEccCCC
Q 006424          307 DKTVRMWQVGCNQ--CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGK  382 (645)
Q Consensus       307 dg~I~iwd~~~~~--~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~v~~l~~sp~g~  382 (645)
                      ...|+..|++...  ..........+.+++|++.++.++.+-...+.|..+++.++..  ......-.....+++.+.+.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            4678888887653  2222233345778999984455555555678899999877632  12222234567889987555


Q ss_pred             EEEE-EecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE--CCCeEEEEECCcceeeEeecC
Q 006424          383 GFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS--EDSKLRILDGVDVIHKFKGLP  459 (645)
Q Consensus       383 ~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~  459 (645)
                      .|+. -...+.|.++++.+......   ...    .......+++.|.+. .|+.+.  ..+.|...+............
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l---~~~----~~~~P~giavdp~~g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~  163 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVL---FWQ----ELDQPRAIALDPSSG-FMYWTDWGEVPKIERAGMDGSSRFIIINS  163 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEE---ECS----SCSSEEEEEEEGGGT-EEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEE---EeC----CCCCccEEEEeCCCC-EEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence            5544 44567899999876543221   111    124578999998753 444444  357888888663222222222


Q ss_pred             CCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCC
Q 006424          460 KSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL  493 (645)
Q Consensus       460 ~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~  493 (645)
                      .-.....++++|++..|+.+. ..+.|..+|++..
T Consensus       164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence            344678999999777666654 5688999998754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.50  E-value=0.00091  Score=73.83  Aligned_cols=228  Identities=9%  Similarity=0.018  Sum_probs=121.4

Q ss_pred             EEEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          203 IWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       203 V~~l~fspdg~~L~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      ..++++.++|++++.|+. ++.+.+||..+......                                           .
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~-------------------------------------------~  281 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-------------------------------------------P  281 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-------------------------------------------C
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeEC-------------------------------------------C
Confidence            345678889999999984 56799999876322110                                           0


Q ss_pred             eeccCccCeEEEEEcCCC-eEEEEe-CC-----CcEEEEecCCCeEEEEe-----cCCCcEEEEEEeeCCCCEEEEEeCC
Q 006424          282 ELHGHKGDVLDLAWSNSN-YLLSCS-MD-----KTVRMWQVGCNQCLNVF-----DHHNYVTCVQFNPIDDNYFISGSID  349 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~~-~l~s~s-~d-----g~I~iwd~~~~~~~~~~-----~~~~~v~~l~~~p~~~~~l~s~s~d  349 (645)
                      .+..... -.+++..+++ .++.|+ .+     ..+.+||..+++....-     .....-....+.. ++..++.|+.+
T Consensus       282 ~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~  359 (656)
T 1k3i_A          282 DMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKK  359 (656)
T ss_dssp             CCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGG
T ss_pred             CCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec-CCceEEEECCC
Confidence            1111111 1233444455 666666 34     56999999887654431     0000000011122 45555555544


Q ss_pred             C---------cEEEEeCCCCcEEEeecc----------CCCeEEEEEcc-CCCEEEEEecCC-----------eEEEEEe
Q 006424          350 G---------KVRIWGVCEKRVVDWADV----------RDVISAICYIP-DGKGFIVGSITG-----------TCHFYKA  398 (645)
Q Consensus       350 g---------~i~vwd~~~~~~~~~~~~----------~~~v~~l~~sp-~g~~l~~g~~dg-----------~i~iwd~  398 (645)
                      |         .+..||..+.........          ...-.++.|.. +++.+++|+.++           .+.+||.
T Consensus       360 g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~  439 (656)
T 1k3i_A          360 GSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP  439 (656)
T ss_dssp             GCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST
T ss_pred             CcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC
Confidence            3         567888877653332111          11234444543 677788877542           5777777


Q ss_pred             cCCceeeeE-EeeccccccCCCCeEEEEEcCCCCcEEEEEECC-----------CeEEEEECCcceeeEee--cCCCCCe
Q 006424          399 SGNDLKLEK-VDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----------SKLRILDGVDVIHKFKG--LPKSGSQ  464 (645)
Q Consensus       399 ~~~~~~~~~-~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-----------g~I~iwd~~~~~~~~~~--~~~~~~i  464 (645)
                      .+....... ..+..     ...-.++...|+| .+++.|+.+           ..+.+||..+..-....  .......
T Consensus       440 ~~~~W~~~~~~~mp~-----~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~h  513 (656)
T 1k3i_A          440 GTSPNTVFASNGLYF-----ARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYH  513 (656)
T ss_dssp             TSCCEEEECTTCCSS-----CCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTT
T ss_pred             CCCCeeEEccCCCCC-----CcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccc
Confidence            665542211 01111     1122345667787 788888754           46899997643211111  1122233


Q ss_pred             EEEEEecCCCEEEEEeC
Q 006424          465 MSASFTTTGKHIISIGD  481 (645)
Q Consensus       465 ~~v~~sp~~~~l~t~s~  481 (645)
                      ....+.|+++.++.||.
T Consensus       514 s~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          514 SISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEEEECTTSCEEEEECC
T ss_pred             cHhhcCCCcEEEecCCC
Confidence            44556799999999985

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.46  E-value=0.0066  Score=59.34  Aligned_cols=162  Identities=9%  Similarity=0.125  Sum_probs=106.8

Q ss_pred             CcEEEEEEeeCCCCEEEEEe-CCCcEEEEeCCCCcEEEe-ecc-------CCCeEEEEE---ccCCCEEEEEec------
Q 006424          328 NYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVVDW-ADV-------RDVISAICY---IPDGKGFIVGSI------  389 (645)
Q Consensus       328 ~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~-~~~-------~~~v~~l~~---sp~g~~l~~g~~------  389 (645)
                      -...+++|++ ....|..++ ..++|..||...+..... ...       ...+..+.|   .|+++++++...      
T Consensus        13 ~yPE~~~wd~-~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDR-TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEET-TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             cCCcCccCcC-CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            3456789988 455555555 789999999986654443 111       113578999   688877776442      


Q ss_pred             -------CCeEEEEEec---CCceeeeEEeecccccc-------CCCCeEEEEEcCCCCcEEEEEECC-CeEEEEECCcc
Q 006424          390 -------TGTCHFYKAS---GNDLKLEKVDFHDRKKT-------SGNKITGIQFSRDESQRIMITSED-SKLRILDGVDV  451 (645)
Q Consensus       390 -------dg~i~iwd~~---~~~~~~~~~~~~~~~~~-------~~~~i~~i~~s~~g~~~l~~~s~d-g~I~iwd~~~~  451 (645)
                             +..+..||+.   +.+.. ....+......       .......++..++| +..++++.. +.|...+....
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~-~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPV-WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCS-EEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSC
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEE-EEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCC
Confidence                   6789999998   45432 22222211000       11347899999998 788888888 88887775422


Q ss_pred             -eeeEeec----CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          452 -IHKFKGL----PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       452 -~~~~~~~----~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                       ...+...    ......+.|+++|+|+.|++....|.+..+|+..
T Consensus       170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence             2222211    1223467999999999998887799999999884

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.42  E-value=0.034  Score=61.97  Aligned_cols=182  Identities=8%  Similarity=-0.073  Sum_probs=116.3

Q ss_pred             CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC----cEEE-eeccCCCeEEEEEccC
Q 006424          306 MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----RVVD-WADVRDVISAICYIPD  380 (645)
Q Consensus       306 ~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~----~~~~-~~~~~~~v~~l~~sp~  380 (645)
                      ....|+..++..............+..++|++.++.++++-...+.|+.+++...    .... +.........|++.+.
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            3456888888766655555556678899999844445555555678999998753    2222 2224456778999987


Q ss_pred             CCEEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-CeEEEEECCcceeeEeec
Q 006424          381 GKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGL  458 (645)
Q Consensus       381 g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-g~I~iwd~~~~~~~~~~~  458 (645)
                      ++.|+.+ ...+.|.+.++.+...... +. ..     ......|++.|.+..++++-... +.|...++..........
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l-~~-~~-----l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~  554 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTL-FR-EN-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  554 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEE-EE-CT-----TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEE-Ee-CC-----CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence            7655555 4567899999886553221 11 11     24578999999753444444333 788888876433333333


Q ss_pred             CCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCC
Q 006424          459 PKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELC  494 (645)
Q Consensus       459 ~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~  494 (645)
                      ..-....+|++++.+..|+.+. ..+.|...+++...
T Consensus       555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            3445789999998777776664 45789999987653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.41  E-value=0.034  Score=54.82  Aligned_cols=141  Identities=13%  Similarity=0.162  Sum_probs=89.3

Q ss_pred             CCcEEEEecC--CCeEEEEecC-------C-CcEEEEEE--eeCCCC-EEEEEeCCCcEEEEeCC-------CCcEEEee
Q 006424          307 DKTVRMWQVG--CNQCLNVFDH-------H-NYVTCVQF--NPIDDN-YFISGSIDGKVRIWGVC-------EKRVVDWA  366 (645)
Q Consensus       307 dg~I~iwd~~--~~~~~~~~~~-------~-~~v~~l~~--~p~~~~-~l~s~s~dg~i~vwd~~-------~~~~~~~~  366 (645)
                      +++|.+|++.  ++. +..+..       . ..+..+++  +|..+. ++++...+|.+..|++.       +.+.+...
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            5789999773  343 444421       1 45667777  663343 67888889999999883       23455566


Q ss_pred             ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee-eeEEeeccccccCCCCeEEEEE--cCCCCcEEEEEE-CCCe
Q 006424          367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQF--SRDESQRIMITS-EDSK  442 (645)
Q Consensus       367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~--s~~g~~~l~~~s-~dg~  442 (645)
                      ...+.+..+...+....|+++-++..|..|+....... ...+..... ..-...+..+++  .+++..+|++++ .++.
T Consensus       177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            67788999999998899999999977666664422210 111111110 111235777777  455533666666 5679


Q ss_pred             EEEEECC
Q 006424          443 LRILDGV  449 (645)
Q Consensus       443 I~iwd~~  449 (645)
                      ..+||..
T Consensus       256 ~~Vydr~  262 (355)
T 3amr_A          256 YAIYDRQ  262 (355)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            9999975

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.40  E-value=0.22  Score=54.02  Aligned_cols=190  Identities=5%  Similarity=-0.114  Sum_probs=101.8

Q ss_pred             CcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeeeEecCCCCc---ccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          201 GCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGF---GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       201 ~~V~~l~fspdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      ..+..++|++.+..| ++-..++.|..+++................   ......+.+.+.......+.....      +
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~------d  110 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL------D  110 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET------T
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEec------C
Confidence            457899999865544 455567889888887643322221111111   111122333332222222222211      2


Q ss_pred             CCCceeec-cCccCeEEEEEcCC-CeEEEEeC--CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCc
Q 006424          277 ESPLQELH-GHKGDVLDLAWSNS-NYLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGK  351 (645)
Q Consensus       277 ~~~~~~l~-~h~~~V~~l~~s~~-~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~dg~  351 (645)
                      +.....+. ..-.....+++.|. |.|+.+..  .+.|...+++..........-.....+++++ +++.|+.+. ..+.
T Consensus       111 G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~-~~~~LY~aD~~~~~  189 (628)
T 4a0p_A          111 GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDY-AKRRLYWTDLDTNL  189 (628)
T ss_dssp             STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEET-TTTEEEEEETTTTE
T ss_pred             CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEcc-ccCEEEEEECCCCE
Confidence            32223332 33345689999984 66665553  4677777776444333334455788999998 656555554 4678


Q ss_pred             EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEe
Q 006424          352 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA  398 (645)
Q Consensus       352 i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~  398 (645)
                      |..+|+.+.....+.........+++.. +..+++-...+.|...|.
T Consensus       190 I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          190 IESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             EEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             EEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence            9999987654433333334455677654 333333334566666664

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.37  E-value=0.051  Score=54.53  Aligned_cols=226  Identities=15%  Similarity=0.112  Sum_probs=116.9

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          201 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       201 ~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      ..-+.|+|.|+|+++++ ..+|.|.+++  ++......                                      ... 
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~--------------------------------------~~~-   68 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYA--------------------------------------ELS-   68 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEE--------------------------------------ECC-
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEee--------------------------------------cce-
Confidence            35679999999985555 5668899888  32110000                                      000 


Q ss_pred             eeeccCccCeEEEEEcCC----CeEEEEeC-C-----CcEEEEecCCCe-----EE-EEec----CCCcEEEEEEeeCCC
Q 006424          281 QELHGHKGDVLDLAWSNS----NYLLSCSM-D-----KTVRMWQVGCNQ-----CL-NVFD----HHNYVTCVQFNPIDD  340 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~----~~l~s~s~-d-----g~I~iwd~~~~~-----~~-~~~~----~~~~v~~l~~~p~~~  340 (645)
                       .+.........++++|+    +.|+.+.. .     +.|..++...+.     .+ ..+.    .......++|.| ++
T Consensus        69 -v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG  146 (352)
T 2ism_A           69 -VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DG  146 (352)
T ss_dssp             -CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TS
T ss_pred             -EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CC
Confidence             11112345788999997    55444333 2     678888876431     11 1122    112346899999 88


Q ss_pred             CEEEEEeC-------------CCcEEEEeCCCC-------------c-EEEeeccCCCeEEEEEcc-CCCEEEEEecCCe
Q 006424          341 NYFISGSI-------------DGKVRIWGVCEK-------------R-VVDWADVRDVISAICYIP-DGKGFIVGSITGT  392 (645)
Q Consensus       341 ~~l~s~s~-------------dg~i~vwd~~~~-------------~-~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~  392 (645)
                      .++++.+.             .|.|.-++....             . .+...++ .....++|+| +|.++++-...+.
T Consensus       147 ~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~  225 (352)
T 2ism_A          147 MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSG  225 (352)
T ss_dssp             CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC--
T ss_pred             CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCC
Confidence            76666432             145666665431             0 1111122 2356788999 5554444322222


Q ss_pred             E------EEEEecCCce---e------------eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc
Q 006424          393 C------HFYKASGNDL---K------------LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV  451 (645)
Q Consensus       393 i------~iwd~~~~~~---~------------~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~  451 (645)
                      +      .+.-+.....   +            .....+     ........++| .+| .++++....+.|...+....
T Consensus       226 ~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-----~~~~ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~  298 (352)
T 2ism_A          226 EQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-----PQGFPPGNLAF-FRG-DLYVAGLRGQALLRLVLEGE  298 (352)
T ss_dssp             ----CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-----TTCCCEEEEEE-ETT-EEEEEETTTTEEEEEEEEEE
T ss_pred             CCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-----CCCCCCcceEE-ECC-EEEEEECCCCEEEEEEECCC
Confidence            1      1222221110   0            000000     11234567777 344 56666666677877765421


Q ss_pred             e--------eeEeecCCCCCeEEEEEecCCCEEEEEe
Q 006424          452 I--------HKFKGLPKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       452 ~--------~~~~~~~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      .        ..+.  .....+..+++.|||.+.++..
T Consensus       299 ~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          299 RGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEEC
T ss_pred             Ccceeecchheec--ccCCCeeEEEECCCCcEEEEEe
Confidence            1        1121  1346789999999998777654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.33  E-value=0.23  Score=53.99  Aligned_cols=196  Identities=7%  Similarity=-0.030  Sum_probs=125.8

Q ss_pred             cCeEEEEEcCC-CeEE-EEeCCCcEEEEecCCCeEEEEecC-CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE
Q 006424          288 GDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  364 (645)
Q Consensus       288 ~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~  364 (645)
                      ..+..++|++. +.|+ +-..++.|..++++.......+.. ......+++.+..++++++-...+.|.+.++.+.....
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            45778999975 4544 555678899998875443333332 23567888887345555665567889999998765433


Q ss_pred             ee-ccCCCeEEEEEccCCCEEEEEec--CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC
Q 006424          365 WA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS  441 (645)
Q Consensus       365 ~~-~~~~~v~~l~~sp~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg  441 (645)
                      +. ..-.....++++|....|+....  .+.|...++.+......   ...     ......+++++++..++++-...+
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l---~~~-----~~~P~GlalD~~~~~LY~aD~~~~  188 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL---VPN-----VGRANGLTIDYAKRRLYWTDLDTN  188 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE---ECS-----CSSEEEEEEETTTTEEEEEETTTT
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE---ECC-----CCCcceEEEccccCEEEEEECCCC
Confidence            32 34456789999996666666653  46777777776543221   111     256789999997645566666678


Q ss_pred             eEEEEECCcc-eeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          442 KLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       442 ~I~iwd~~~~-~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      .|..+|+... ...+..  ......++++.. +..+++-...+.|...|..++.
T Consensus       189 ~I~~~d~dG~~~~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          189 LIESSNMLGLNREVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEEEETTSCSCEEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEcCCCCceEEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence            9999997632 222222  334556788765 4444454457888888866553

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.31  E-value=0.18  Score=50.90  Aligned_cols=204  Identities=12%  Similarity=0.148  Sum_probs=132.2

Q ss_pred             ccCeEEEEEcCCCeEEEEeCCCcEEEEecCC-CeEEEEec-----CCCcEEEEEEeeCCCCEEEEEe-------CCCcEE
Q 006424          287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-----HHNYVTCVQFNPIDDNYFISGS-------IDGKVR  353 (645)
Q Consensus       287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~s-------~dg~i~  353 (645)
                      ...|..-.|-.+..|+-.+ +..|+-|+++. ..+++.|.     ....|.....++ +.+.++..+       -.|.+.
T Consensus       105 ~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQ  182 (494)
T 1bpo_A          105 TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQ  182 (494)
T ss_dssp             SSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEE
T ss_pred             CCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEE
Confidence            3567777887666555444 35799999964 35666664     234677777777 677655433       247789


Q ss_pred             EEeCCCCcEEEeeccCCCeEEEEEccC---CCEEEEEec---CCeEEEEEecCC-----ceeeeEEeeccccccCCCCeE
Q 006424          354 IWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSI---TGTCHFYKASGN-----DLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       354 vwd~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~~g~~---dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      +|..+.+....+.+|......+.+..+   ...++.+..   .+.+++.++...     ..........-......+-..
T Consensus       183 LYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv  262 (494)
T 1bpo_A          183 LYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  262 (494)
T ss_dssp             EEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred             EeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence            999988888878777665554444321   124444444   378999998543     111222222222223345667


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ++..++.- ..++.-+.-|.|.+||+.+....+...-....|...+-+....=++.....|.|.--.++..
T Consensus       263 amqvs~ky-gviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          263 AMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             EEEecccC-CEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            88888875 68999999999999999988888887666667766665555555555556776666666554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.31  E-value=0.16  Score=50.27  Aligned_cols=193  Identities=8%  Similarity=0.068  Sum_probs=101.2

Q ss_pred             cCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe--cCCCcEEEEEEeeCCCCEEEEEeCCCcEEE-EeCCCCcEEE
Q 006424          288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRI-WGVCEKRVVD  364 (645)
Q Consensus       288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v-wd~~~~~~~~  364 (645)
                      +.+..+.+.+++.++.++.++.|..- .+.++.-...  .....+..+.+.| ++.+++++. +|.+.. .|-....-..
T Consensus       122 ~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~  198 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP  198 (327)
T ss_dssp             SCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred             CCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence            34667777666655555556654321 1223322222  3455788999998 777776654 455444 3421111111


Q ss_pred             -eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeE
Q 006424          365 -WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL  443 (645)
Q Consensus       365 -~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I  443 (645)
                       .......+..+.+.++++.+ +++.+|.+++.+..... ........  .......+.++.+.+++ .++++ +.++.|
T Consensus       199 ~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~-tW~~~~~~--~~~~~~~~~~v~~~~~~-~~~~~-g~~g~i  272 (327)
T 2xbg_A          199 HNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSE-NWGELLSP--LRRNSVGFLDLAYRTPN-EVWLA-GGAGAL  272 (327)
T ss_dssp             EECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEE-EECCCBCT--TSSCCSCEEEEEESSSS-CEEEE-ESTTCE
T ss_pred             CCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCC-eeEeccCC--cccCCcceEEEEecCCC-EEEEE-eCCCeE
Confidence             12345678889999988755 45567877765422111 11111111  00112358889999875 45454 456766


Q ss_pred             EEE-ECCcceeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          444 RIL-DGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       444 ~iw-d~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      ..- |....-..... ......+.++.|.+++. +++++.+|.|.-++-
T Consensus       273 ~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          273 LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            432 21111111111 11234677888876554 666678898776653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.27  E-value=0.044  Score=57.12  Aligned_cols=153  Identities=12%  Similarity=0.051  Sum_probs=95.5

Q ss_pred             CeEEEEEcCC--CeEEEEeC-CCcEEEEecCCCeEEEEecC----CCcEEEEEE-------eeCCCCEEEEEeCCC----
Q 006424          289 DVLDLAWSNS--NYLLSCSM-DKTVRMWQVGCNQCLNVFDH----HNYVTCVQF-------NPIDDNYFISGSIDG----  350 (645)
Q Consensus       289 ~V~~l~~s~~--~~l~s~s~-dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~-------~p~~~~~l~s~s~dg----  350 (645)
                      ....|+|+|.  +.|+.+.. .+.|++.|...+........    ......++|       ++ +++.|+++...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence            4568899983  45555544 46789999988777665532    235899999       99 888666666544    


Q ss_pred             ---cEEEEeCCC-CcE------EEeeccCCCeEEEEEccCC-CEEEEEecCCeEEEEEec-------CCce-----e---
Q 006424          351 ---KVRIWGVCE-KRV------VDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKAS-------GNDL-----K---  404 (645)
Q Consensus       351 ---~i~vwd~~~-~~~------~~~~~~~~~v~~l~~sp~g-~~l~~g~~dg~i~iwd~~-------~~~~-----~---  404 (645)
                         .|.+++... +..      ..+.. ......++++|++ .++++-..++.|..+|+.       +...     +   
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence               266665433 122      11211 2345678899954 445555677889999997       4443     0   


Q ss_pred             --eeE-EeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC
Q 006424          405 --LEK-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  448 (645)
Q Consensus       405 --~~~-~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~  448 (645)
                        ... .....     ......++|+|+|..++++-+..+.|+.++.
T Consensus       298 g~~~~l~~~~~-----~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          298 NTFKQLFTIAD-----PSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TTEEEEEECSS-----SSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cccceeEecCC-----CCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence              111 11111     2456799999998334555566789998664

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.22  E-value=0.0098  Score=64.24  Aligned_cols=85  Identities=15%  Similarity=0.066  Sum_probs=53.4

Q ss_pred             CCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          349 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       349 dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      +|.|..||+.+++.+-.......+..-.....+.++++|+.||.++.||.++++.... ......     ....-+.|..
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~-~~~~~g-----~~a~P~~y~~  538 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK-FQTGSG-----IVSPPITWEQ  538 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSSC-----CCSCCEEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE-ecCCCC-----cccCceEEEE
Confidence            5789999999998765433333332222223567888899999999999998886443 222211     1112255667


Q ss_pred             CCCcEEEEEEC
Q 006424          429 DESQRIMITSE  439 (645)
Q Consensus       429 ~g~~~l~~~s~  439 (645)
                      +|.+++++.+.
T Consensus       539 ~G~qYv~~~~G  549 (582)
T 1flg_A          539 DGEQYLGVTVG  549 (582)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEcc
Confidence            77566666554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.18  E-value=0.1  Score=52.28  Aligned_cols=228  Identities=12%  Similarity=0.030  Sum_probs=119.4

Q ss_pred             ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEE--EEec----CCCcEEEEEEeeCC---CCEEEEEeC-C-----Cc
Q 006424          287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL--NVFD----HHNYVTCVQFNPID---DNYFISGSI-D-----GK  351 (645)
Q Consensus       287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~--~~~~----~~~~v~~l~~~p~~---~~~l~s~s~-d-----g~  351 (645)
                      -..-..++|.|++.++.+..+|.|.+++  .++..  ..+.    .......++++| +   +..|+++.. .     +.
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccE
Confidence            3456789999999777778889999998  44422  1111    234688999999 6   444444433 2     56


Q ss_pred             EEEEeCCCCcE------EE-ee---ccCCCeEEEEEccCCCEEEEEec-------------CCeEEEEEecCCce-----
Q 006424          352 VRIWGVCEKRV------VD-WA---DVRDVISAICYIPDGKGFIVGSI-------------TGTCHFYKASGNDL-----  403 (645)
Q Consensus       352 i~vwd~~~~~~------~~-~~---~~~~~v~~l~~sp~g~~l~~g~~-------------dg~i~iwd~~~~~~-----  403 (645)
                      |..|+...+.+      .. +.   ........+.|.|+|.+.++.+.             .|.|.-++....-.     
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            88888765421      11 11   11223468999999965554322             14555555443100     


Q ss_pred             ------eeeEEeeccccccCCCCeEEEEEcC-CCCcEEEEEECCCe--------EEEEECCcc---------------ee
Q 006424          404 ------KLEKVDFHDRKKTSGNKITGIQFSR-DESQRIMITSEDSK--------LRILDGVDV---------------IH  453 (645)
Q Consensus       404 ------~~~~~~~~~~~~~~~~~i~~i~~s~-~g~~~l~~~s~dg~--------I~iwd~~~~---------------~~  453 (645)
                            ....+. .+.     .....++|+| +| .++++-...+.        |.+......               ..
T Consensus       187 ~~~~~~~~~i~a-~G~-----rnp~g~a~d~~~g-~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  259 (352)
T 2ism_A          187 LGRRGARPEVYS-LGH-----RNPQGLAWHPKTG-ELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD  259 (352)
T ss_dssp             TTCTTSCTTEEE-ECC-----SEECCCEECTTTC-CEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             cCCCCCCccEEE-EcC-----CCcccEEEECCCC-CEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence                  001111 111     2356788999 55 55554433333        444331110               00


Q ss_pred             eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeee-ecCCcEEEEecCCCCccccc
Q 006424          454 KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF-FSEGVSVAVQWPGIGTEQKS  530 (645)
Q Consensus       454 ~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~v~~s~~~~~l~~  530 (645)
                      ......+......++| .+|.++++.-..+.|...+++.......     ......+ ...+....+++.|||...++
T Consensus       260 p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~-----~~~~~~~~~~~~rp~~v~~~pdG~lyv~  331 (352)
T 2ism_A          260 PLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWR-----VLRVETALSGFGRLREVQVGPDGALYVT  331 (352)
T ss_dssp             CSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEE-----EEEEEEEEESSCCEEEEEECTTSCEEEE
T ss_pred             CeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCccee-----ecchheecccCCCeeEEEECCCCcEEEE
Confidence            0111112335567888 4676666665667777777754321100     0001111 23356778889999854443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.13  E-value=0.1  Score=52.02  Aligned_cols=150  Identities=15%  Similarity=0.144  Sum_probs=87.1

Q ss_pred             CeEEEEEcC--CC--eEEEEeC---CCcEEEEecCCC--e--EEEEecC--CCcEEEEEEeeCCCCEEEEEe--------
Q 006424          289 DVLDLAWSN--SN--YLLSCSM---DKTVRMWQVGCN--Q--CLNVFDH--HNYVTCVQFNPIDDNYFISGS--------  347 (645)
Q Consensus       289 ~V~~l~~s~--~~--~l~s~s~---dg~I~iwd~~~~--~--~~~~~~~--~~~v~~l~~~p~~~~~l~s~s--------  347 (645)
                      ....+.+.+  ++  +|+.+..   +.+|.+|+++.+  .  .+..+.+  -...+.+.+.+ ++.++++..        
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCccc
Confidence            444555533  33  4555422   467888877543  2  2223332  34678999999 887776654        


Q ss_pred             ---------CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccccccC
Q 006424          348 ---------IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTS  417 (645)
Q Consensus       348 ---------~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  417 (645)
                               ..|.|+.+|.  +++......-...+.++|+||++.++++. ..+.|..|++...........+..     
T Consensus       192 ~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~-----  264 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-----  264 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-----
T ss_pred             ccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-----
Confidence                     1244555555  34333344445678999999999888775 468999999874322111111111     


Q ss_pred             CCCeEEEEEcC-CCCcEEEEEECC-CeEEEEE
Q 006424          418 GNKITGIQFSR-DESQRIMITSED-SKLRILD  447 (645)
Q Consensus       418 ~~~i~~i~~s~-~g~~~l~~~s~d-g~I~iwd  447 (645)
                      ....-.+++.+ +| .+.+++..+ +.|..|+
T Consensus       265 ~g~PDGi~vD~e~G-~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          265 DTLVDNISVDPVTG-DLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             SSEEEEEEECTTTC-CEEEEEESCHHHHHSCC
T ss_pred             CCCCceEEEeCCCC-cEEEEecCCceEEEEEC
Confidence            25567888998 57 555555433 3444444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.10  E-value=0.051  Score=54.74  Aligned_cols=148  Identities=11%  Similarity=0.187  Sum_probs=92.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCc---EEEeec--cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCce----------
Q 006424          339 DDNYFISGSIDGKVRIWGVCEKR---VVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL----------  403 (645)
Q Consensus       339 ~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~--~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~----------  403 (645)
                      ++..++.+- ++.||.-++..+.   .+....  .-..+..+..+|+|++||+.+ +..|.|..+.....          
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            455555543 4667776765322   222221  123678899999999999886 45888888873221          


Q ss_pred             -eeeEEeeccccccCCCCeEEEEEcCCCC--cEEEEEECCCeEEEEECCc----ce------eeEeecCCCCCeEEEEEe
Q 006424          404 -KLEKVDFHDRKKTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVD----VI------HKFKGLPKSGSQMSASFT  470 (645)
Q Consensus       404 -~~~~~~~~~~~~~~~~~i~~i~~s~~g~--~~l~~~s~dg~I~iwd~~~----~~------~~~~~~~~~~~i~~v~~s  470 (645)
                       ....+...........+|..+.|+|-+.  ..|++-..|+.|++||+..    +.      ..+........|.+++|+
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg  188 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS  188 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence             1112222221111247899999999643  4899999999999999763    11      111112233678899999


Q ss_pred             cCCCEEEEEe--CCccEEEE
Q 006424          471 TTGKHIISIG--DDCRVYVW  488 (645)
Q Consensus       471 p~~~~l~t~s--~dg~I~iw  488 (645)
                      +++-.|...+  .+|.|+-.
T Consensus       189 ~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          189 KDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TTSSCEEEEECTTSCEEEEE
T ss_pred             CCCcEEEEEecCCCCCEEEE
Confidence            9887666654  77777643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.07  E-value=0.3  Score=48.87  Aligned_cols=231  Identities=14%  Similarity=0.081  Sum_probs=120.5

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCC
Q 006424          200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP  279 (645)
Q Consensus       200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (645)
                      -..-+.|+|.|+|+++++ ..+|.|++++. ++. .  .+.                                    ..+
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~--~~~------------------------------------~~~   66 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-K--LVA------------------------------------SFD   66 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-E--EEE------------------------------------ECC
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-e--Eee------------------------------------ccc
Confidence            345789999999985555 55688988863 221 0  000                                    000


Q ss_pred             ceeeccCccCeEEEEEcCC----CeEEEEeC----C----CcEEEEecCCC-------eEE-EEec--CCCcEEEEEEee
Q 006424          280 LQELHGHKGDVLDLAWSNS----NYLLSCSM----D----KTVRMWQVGCN-------QCL-NVFD--HHNYVTCVQFNP  337 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~----~~l~s~s~----d----g~I~iwd~~~~-------~~~-~~~~--~~~~v~~l~~~p  337 (645)
                        ...........++++|+    +.|+.+..    +    ..|..|+....       +.+ ..+.  .......++|.|
T Consensus        67 --v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p  144 (354)
T 3a9g_A           67 --VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP  144 (354)
T ss_dssp             --CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT
T ss_pred             --eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC
Confidence              01112345778999986    55554432    3    56777776543       111 1121  112346789999


Q ss_pred             CCCCEEEEEeC-------------CCcEEEEeCCCC--------c-EEEeeccCCCeEEEEEcc-CCCEEEEEecCC---
Q 006424          338 IDDNYFISGSI-------------DGKVRIWGVCEK--------R-VVDWADVRDVISAICYIP-DGKGFIVGSITG---  391 (645)
Q Consensus       338 ~~~~~l~s~s~-------------dg~i~vwd~~~~--------~-~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg---  391 (645)
                       ++.++++.+.             .|.|.-++....        . .+...++ .....++|+| +|+++++-...+   
T Consensus       145 -DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~d  222 (354)
T 3a9g_A          145 -DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHD  222 (354)
T ss_dssp             -TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCC
T ss_pred             -CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCc
Confidence             8887766442             245555555432        0 1112222 2356799999 565444432221   


Q ss_pred             eEEEEEecCC--------c-----eeeeEEeeccccccCCCCeEEEEEc-------CCCCcEEEEEECCCeEEEEECCcc
Q 006424          392 TCHFYKASGN--------D-----LKLEKVDFHDRKKTSGNKITGIQFS-------RDESQRIMITSEDSKLRILDGVDV  451 (645)
Q Consensus       392 ~i~iwd~~~~--------~-----~~~~~~~~~~~~~~~~~~i~~i~~s-------~~g~~~l~~~s~dg~I~iwd~~~~  451 (645)
                      .|.+......        .     .......+.    ........+.|.       .+| .++++....+.|...++...
T Consensus       223 ei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~----~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          223 EVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG----SETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDN  297 (354)
T ss_dssp             EEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT----TCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGG
T ss_pred             EEEEecCCCcCCCCcccCCCCCCCCcCCEeecC----CCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCC
Confidence            2333221100        0     000000010    112457788884       455 66666666778888886632


Q ss_pred             --ee-eEeec-CCCCCeEEEEEecCCCEEEEEe
Q 006424          452 --IH-KFKGL-PKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       452 --~~-~~~~~-~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                        .. ..... .....+..+++.|||.+.++..
T Consensus       298 g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          298 MEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             GCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence              11 11111 1245789999999997776654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.02  E-value=0.53  Score=50.98  Aligned_cols=281  Identities=8%  Similarity=-0.057  Sum_probs=135.4

Q ss_pred             CcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeEecCCCCc--ccC-CCCceEEecccCCCcceeecCCCceecc
Q 006424          201 GCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGF--GSN-AKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       201 ~~V~~l~fspdg~-~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      .....+++.+.+. +.++-...+.|.+.++................  +.. ...+.+.+. .......+    .....+
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~t-D~g~~~~I----~r~~~d  158 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWT-DWGEVPKI----ERAGMD  158 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEE-ECSSSCEE----EEEETT
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEe-ccCCCCEE----EEEECC
Confidence            4578899998555 55555667889999987643322211111111  111 112233222 21111011    001112


Q ss_pred             CCCceeec-cCccCeEEEEEcCC-CeEEEE-eCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424          277 ESPLQELH-GHKGDVLDLAWSNS-NYLLSC-SMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV  352 (645)
Q Consensus       277 ~~~~~~l~-~h~~~V~~l~~s~~-~~l~s~-s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i  352 (645)
                      +.....+. ..-.....++++++ +.|+.+ +..+.|...|++......... .......+++..  +.++++-...+.|
T Consensus       159 G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~--~~ly~td~~~~~V  236 (619)
T 3s94_A          159 GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSI  236 (619)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESS--SEEEEECTTTCSE
T ss_pred             CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeC--CEEEEecCCCCEE
Confidence            33333332 23345688999875 455544 556788888887543322221 122234666654  3444444456778


Q ss_pred             EEEeCCCCcEEEe-ec-----------cC--------------CCeEEEEE-----------ccCC--------------
Q 006424          353 RIWGVCEKRVVDW-AD-----------VR--------------DVISAICY-----------IPDG--------------  381 (645)
Q Consensus       353 ~vwd~~~~~~~~~-~~-----------~~--------------~~v~~l~~-----------sp~g--------------  381 (645)
                      ...|..+++.... ..           |.              +....+|+           .|.|              
T Consensus       237 ~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~  316 (619)
T 3s94_A          237 LACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGA  316 (619)
T ss_dssp             EEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSC
T ss_pred             EEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCC
Confidence            8888766542111 00           00              00111121           1111              


Q ss_pred             CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCC
Q 006424          382 KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS  461 (645)
Q Consensus       382 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~  461 (645)
                      ..++.-+..+.|+..++.............+     -..+..+.|.+.+..++++-...+.|+.++.............-
T Consensus       317 ~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~-----l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~  391 (619)
T 3s94_A          317 TELLLLARRTDLRRISLDTPDFTDIVLQLED-----IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI  391 (619)
T ss_dssp             SEEEEEEESSCEEEEESSSTTCCCEECCCSC-----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred             ceEEEEEcccceEEEecCCCccceeEEeccc-----cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCC
Confidence            1111112233455555543322111111111     24577899998653555555567889999876322222222233


Q ss_pred             CCeEEEEEecCCC-EEEEEeCCccEEEEeCCCC
Q 006424          462 GSQMSASFTTTGK-HIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       462 ~~i~~v~~sp~~~-~l~t~s~dg~I~iwd~~~~  493 (645)
                      ....++++++.+. +.++-+..+.|.+.+++..
T Consensus       392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence            5677899997555 4455456789999998765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.92  E-value=0.0046  Score=68.42  Aligned_cols=199  Identities=11%  Similarity=-0.025  Sum_probs=118.5

Q ss_pred             cCeEEEEEcCC-CeEEEE-eCCCcEEEEecCC----CeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424          288 GDVLDLAWSNS-NYLLSC-SMDKTVRMWQVGC----NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  360 (645)
Q Consensus       288 ~~V~~l~~s~~-~~l~s~-s~dg~I~iwd~~~----~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~  360 (645)
                      ..+..++|++. +.|+.+ ...+.|+.+++..    ......+. .......+++.+..++++++-...+.|.++++.+.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            45667888875 455544 4567899998875    22222221 12235667887635555565556788999999876


Q ss_pred             cEEEeec-cCCCeEEEEEccCCCEEEEEec--CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006424          361 RVVDWAD-VRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  437 (645)
Q Consensus       361 ~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~  437 (645)
                      ....+.. .......++++|.+.+|+.+..  .+.|..+++.+.....  + ...    .......|+|+|++..++++-
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l-~~~----~l~~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--L-VTE----NIQWPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--E-SCS----SCSSCCCEEECTTTCCEEEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--E-EeC----CCCCccEEEEeccCCEEEEEe
Confidence            6555433 2345678899997666655543  2678777776543221  1 111    113456899999865666666


Q ss_pred             ECCCeEEEEECCcc-eeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          438 SEDSKLRILDGVDV-IHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       438 s~dg~I~iwd~~~~-~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      +..+.|..++.... ...+.. ........++++..+ .++++....+.|..++..++.
T Consensus       559 ~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~  616 (699)
T 1n7d_A          559 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS  616 (699)
T ss_dssp             TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred             cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence            77789999997532 222221 112233445666543 444555567889999876653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.88  E-value=0.42  Score=47.54  Aligned_cols=191  Identities=12%  Similarity=0.148  Sum_probs=109.7

Q ss_pred             cCeEEEEEcCCCeEEEEe-------------CCCcEEEEecCC--CeEEEEec--------CCCcEEEEEEeeC-CCC-E
Q 006424          288 GDVLDLAWSNSNYLLSCS-------------MDKTVRMWQVGC--NQCLNVFD--------HHNYVTCVQFNPI-DDN-Y  342 (645)
Q Consensus       288 ~~V~~l~~s~~~~l~s~s-------------~dg~I~iwd~~~--~~~~~~~~--------~~~~v~~l~~~p~-~~~-~  342 (645)
                      ...-++...++|.+++++             .+|.|.++|..+  ++. ..+.        ..-....+.+.+. ++. +
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            345566778888766665             689999999873  222 2221        1235677777662 233 3


Q ss_pred             EEEE-eC--CCcEEEEeCCC--CcEEEe---ec-cCCCeEEEEEccCCCEEEEEec-----------------CCeEEEE
Q 006424          343 FISG-SI--DGKVRIWGVCE--KRVVDW---AD-VRDVISAICYIPDGKGFIVGSI-----------------TGTCHFY  396 (645)
Q Consensus       343 l~s~-s~--dg~i~vwd~~~--~~~~~~---~~-~~~~v~~l~~sp~g~~l~~g~~-----------------dg~i~iw  396 (645)
                      |+++ ..  +.+|.+|++..  +.....   .+ .-...+.+.+.++|.+.++...                 .|.+.-+
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~  208 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  208 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence            4444 33  46777877654  322221   11 1245789999999987666531                 2444444


Q ss_pred             EecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc-c-eeeEeecCCCCCeEEEEEec-CC
Q 006424          397 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-V-IHKFKGLPKSGSQMSASFTT-TG  473 (645)
Q Consensus       397 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~-~-~~~~~~~~~~~~i~~v~~sp-~~  473 (645)
                      |.  .....  . ..+.     ...+.++|+||+..++++-+..+.|..|++.. . ..........+..-.+++++ +|
T Consensus       209 d~--~~~~~--~-~~~l-----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G  278 (355)
T 3sre_A          209 SP--NDVRV--V-AEGF-----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG  278 (355)
T ss_dssp             CT--TCCEE--E-EEEE-----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTC
T ss_pred             EC--CeEEE--e-ecCC-----cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCC
Confidence            43  22211  1 1111     45689999999855555666788999999652 1 11111111245677889998 58


Q ss_pred             CEEEEEeCC-ccEEEEe
Q 006424          474 KHIISIGDD-CRVYVWN  489 (645)
Q Consensus       474 ~~l~t~s~d-g~I~iwd  489 (645)
                      ++.+++..+ +.|..|+
T Consensus       279 ~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          279 DLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             CEEEEEESCHHHHHSCC
T ss_pred             cEEEEecCCceEEEEEC
Confidence            888777644 4554443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.82  E-value=0.44  Score=47.56  Aligned_cols=66  Identities=8%  Similarity=0.087  Sum_probs=39.8

Q ss_pred             CCeEEEEEcC-------CCCcEEEEEECCCeEEEEECCcc--eeeEeec-CCCCCeEEEEEecCCCEEEEEe-CCccE
Q 006424          419 NKITGIQFSR-------DESQRIMITSEDSKLRILDGVDV--IHKFKGL-PKSGSQMSASFTTTGKHIISIG-DDCRV  485 (645)
Q Consensus       419 ~~i~~i~~s~-------~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~-~~~~~i~~v~~sp~~~~l~t~s-~dg~I  485 (645)
                      .....+.|..       +| .++++....+.|...++...  ....... .....+..+++.|||.+.++.. .+|.|
T Consensus       271 ~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred             cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence            3566777764       34 56666667778877775532  1111111 1235789999999998766543 34544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.73  E-value=0.56  Score=46.83  Aligned_cols=225  Identities=13%  Similarity=0.078  Sum_probs=120.6

Q ss_pred             ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCe-EEEEec----CCCcEEEEEEeeCC---CCEEEEEeC----C----C
Q 006424          287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVFD----HHNYVTCVQFNPID---DNYFISGSI----D----G  350 (645)
Q Consensus       287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~----~~~~v~~l~~~p~~---~~~l~s~s~----d----g  350 (645)
                      -.....++|.|++.|+.+..+|.|+++|. .++ .+..+.    .......++++| +   +..|+++..    +    .
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence            34578899999998888888899999973 454 222211    234688999999 5   344444332    2    5


Q ss_pred             cEEEEeCCCC--c------EEE-ee-ccCCCeEEEEEccCCCEEEEEec-------------CCeEEEEEecCCce----
Q 006424          351 KVRIWGVCEK--R------VVD-WA-DVRDVISAICYIPDGKGFIVGSI-------------TGTCHFYKASGNDL----  403 (645)
Q Consensus       351 ~i~vwd~~~~--~------~~~-~~-~~~~~v~~l~~sp~g~~l~~g~~-------------dg~i~iwd~~~~~~----  403 (645)
                      .|..|+....  .      +.. +. ........+.|.|+|.+.++.+.             .|.|.-++....-.    
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777776654  1      111 11 11223567999999975555322             14455454433200    


Q ss_pred             --eeeEEeeccccccCCCCeEEEEEcC-CCCcEEEEEECCC---eEEEEECCc---------------ce-eeEeecCCC
Q 006424          404 --KLEKVDFHDRKKTSGNKITGIQFSR-DESQRIMITSEDS---KLRILDGVD---------------VI-HKFKGLPKS  461 (645)
Q Consensus       404 --~~~~~~~~~~~~~~~~~i~~i~~s~-~g~~~l~~~s~dg---~I~iwd~~~---------------~~-~~~~~~~~~  461 (645)
                        ....+. .+.     .....++|+| +| .++++-...+   .|.+.....               .. ..+......
T Consensus       186 f~~~~i~a-~G~-----rnp~Gla~d~~~g-~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~  258 (354)
T 3a9g_A          186 FPNSPIWS-YGH-----RNPQGIDWHRASG-VMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET  258 (354)
T ss_dssp             STTCCEEE-ECC-----SCCCEEEECTTTC-CEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred             CCCCcEEE-Ecc-----CCcceEEEeCCCC-CEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence              001111 111     2356799999 55 4444433222   244433111               00 011110123


Q ss_pred             CCeEEEEEe-------cCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeee--cCCcEEEEecCCCCccc
Q 006424          462 GSQMSASFT-------TTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF--SEGVSVAVQWPGIGTEQ  528 (645)
Q Consensus       462 ~~i~~v~~s-------p~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~v~~s~~~~~l  528 (645)
                      .....++|.       .+|.++++.-..+.|...+++.....        .....+.  ..+....+++.|||...
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~--------~~~~~~~~~~~~rp~~v~~~pDG~ly  326 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV--------RKISTFFKNVFGRLRDVVIDDDGGIL  326 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE--------EEEEEECTTTSCCEEEEEECTTSCEE
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc--------cceeeeccCCCCCeeEEEECCCCcEE
Confidence            467888883       56777777666778888887643110        0011121  13457788888888533

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.63  E-value=1.2  Score=49.49  Aligned_cols=193  Identities=12%  Similarity=0.160  Sum_probs=114.0

Q ss_pred             ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe
Q 006424          287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW  365 (645)
Q Consensus       287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~  365 (645)
                      ...|.++.-..++.|..|+.+| +..||..+.+...... ....|.++.. . ++ .|..++.+ -+..||..+++...+
T Consensus        62 ~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~-~g-~lWigt~~-Gl~~~~~~~~~~~~~  136 (758)
T 3ott_A           62 NTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-Q-GD-TLWLGALN-GLYTYQLQSRKLTSF  136 (758)
T ss_dssp             SSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-E-TT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred             CceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-c-CC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence            3468888777778888888765 7899988765433111 2335777654 3 45 45556655 688899887776554


Q ss_pred             ec-----cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424          366 AD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  440 (645)
Q Consensus       366 ~~-----~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d  440 (645)
                      ..     ....|.++....+|.+. +|+.+ -+..|+..+.....  .............|.++...+++ ..|..|+. 
T Consensus       137 ~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~--~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-  210 (758)
T 3ott_A          137 DTRRNGLPNNTIYSIIRTKDNQIY-VGTYN-GLCRYIPSNGKFEG--IPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-  210 (758)
T ss_dssp             CHHHHCCSCSCEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEE--ECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-
T ss_pred             ccCCCCcCCCeEEEEEEcCCCCEE-EEeCC-CHhhCccCCCceEE--ecCCCccccccceeEEEEEECCC-CEEEEEEC-
Confidence            11     23468888887777644 45554 47778776554321  11111101112357888877765 44445553 


Q ss_pred             CeEEEEECCcce-eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          441 SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       441 g~I~iwd~~~~~-~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +.+..+|..... ..+... ....|.++....+|.+.+. +.+ -+.+++..+.
T Consensus       211 ~Gl~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~  261 (758)
T 3ott_A          211 GYLFQYFPSTGQIKQTEAF-HNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTT  261 (758)
T ss_dssp             EEEEEEETTTTEEEEEEEE-EEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTS
T ss_pred             CCCeEEcCCCCeEEeccCC-CCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCC
Confidence            468888865322 222211 2335788888877776654 444 4777887654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.54  E-value=0.0081  Score=66.43  Aligned_cols=179  Identities=8%  Similarity=-0.065  Sum_probs=105.4

Q ss_pred             CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEE-eCCCcEEEEeCCC----CcEEEee-ccCCCeEEEEEccC
Q 006424          307 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDGKVRIWGVCE----KRVVDWA-DVRDVISAICYIPD  380 (645)
Q Consensus       307 dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~-s~dg~i~vwd~~~----~~~~~~~-~~~~~v~~l~~sp~  380 (645)
                      .+.|+..++..............+..++|++ .++.|+.+ ...+.|+.+++.+    .....+. ........+++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            4578888888766655554445677899998 55555554 4467899999875    2222222 12234567888865


Q ss_pred             CCEEEE-EecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-CeEEEEECCcceeeEeec
Q 006424          381 GKGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGL  458 (645)
Q Consensus       381 g~~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-g~I~iwd~~~~~~~~~~~  458 (645)
                      +..|+. -...+.|.++++.+......   ....    ......+++.|.+..++++-... +.|..+++..........
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l---~~~~----~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~  536 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTL---FREQ----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  536 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEE---CCCS----SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEE---EeCC----CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence            544444 44567899998876543211   1110    13456788998753444443333 678887765322222111


Q ss_pred             CCCCCeEEEEEecCCCEEEEE-eCCccEEEEeCCCC
Q 006424          459 PKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDEL  493 (645)
Q Consensus       459 ~~~~~i~~v~~sp~~~~l~t~-s~dg~I~iwd~~~~  493 (645)
                      ..-.....|+|+|++..|+.+ +..+.|..++++..
T Consensus       537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            123456789999976655544 45678999998754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.43  E-value=0.053  Score=49.41  Aligned_cols=144  Identities=9%  Similarity=0.015  Sum_probs=83.1

Q ss_pred             CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCC--------eEEEEEccCCCEEEEEecCCeEEEEEec
Q 006424          328 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV--------ISAICYIPDGKGFIVGSITGTCHFYKAS  399 (645)
Q Consensus       328 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------v~~l~~sp~g~~l~~g~~dg~i~iwd~~  399 (645)
                      ..+..++|+| ++.+.++  .+|.++-.+..+.....+......        ..++.|.|+|.+.++  .||.|+-++..
T Consensus        41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            3677999999 8887766  678877777655222221111111        578999999987777  56988777653


Q ss_pred             CCceeee-----EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC-cc------eeeEeecCCCCCeEEE
Q 006424          400 GNDLKLE-----KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DV------IHKFKGLPKSGSQMSA  467 (645)
Q Consensus       400 ~~~~~~~-----~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~-~~------~~~~~~~~~~~~i~~v  467 (645)
                      +......     .+.-.+     -..+..+.+.|+| .+.++.  |+.++-...- ..      .....+......-..+
T Consensus       116 ~~~~~~Wl~~a~~vg~~g-----w~~~~~lff~p~G-~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l  187 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGG-----WSGFKFLFFHPNG-YLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFL  187 (236)
T ss_dssp             CSTTCCHHHHSEEEECSS-----GGGEEEEEECTTS-CEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEE
T ss_pred             cCCCCceeccccEeccCC-----CCceEEEEECCCc-eEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEE
Confidence            2221110     111000     1467899999998 454444  7775433211 00      1122222233344557


Q ss_pred             EEecCCCEEEEEeCCccEE
Q 006424          468 SFTTTGKHIISIGDDCRVY  486 (645)
Q Consensus       468 ~~sp~~~~l~t~s~dg~I~  486 (645)
                      .|++++.+.+..  +|.++
T Consensus       188 ~f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          188 FFSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             EECTTSCEEEEE--TTEEE
T ss_pred             EECCCCcEEEEe--CCeEE
Confidence            789998877776  66443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.39  E-value=0.28  Score=47.60  Aligned_cols=181  Identities=14%  Similarity=0.158  Sum_probs=93.8

Q ss_pred             eEEEEeCC-----CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEeCCCCcEEEeec
Q 006424          300 YLLSCSMD-----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRVVDWAD  367 (645)
Q Consensus       300 ~l~s~s~d-----g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~  367 (645)
                      .++.|+.+     ..+.+||..+.+-...-.  ....-.+++..  ++.+++.|+.++     .+.+||+.+.+-.....
T Consensus        64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~  141 (302)
T 2xn4_A           64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP  141 (302)
T ss_dssp             EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC
T ss_pred             EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC
Confidence            55566644     358889988776543322  11111222222  677788887653     58889998877555432


Q ss_pred             cCCC--eEEEEEccCCCEEEEEecC-------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424          368 VRDV--ISAICYIPDGKGFIVGSIT-------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  438 (645)
Q Consensus       368 ~~~~--v~~l~~sp~g~~l~~g~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s  438 (645)
                      ...+  -.+++. -+++.++.|+.+       ..+..||+.+....... .....    ......+.+  ++ .+++.|+
T Consensus       142 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG  212 (302)
T 2xn4_A          142 MNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA-EMSTR----RSGAGVGVL--NN-LLYAVGG  212 (302)
T ss_dssp             CSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC-CCSSC----CBSCEEEEE--TT-EEEEECC
T ss_pred             CCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC-CCccc----cccccEEEE--CC-EEEEECC
Confidence            2211  122222 356666666542       35888998876543221 11111    111122222  33 6777776


Q ss_pred             CC-----CeEEEEECCcceee-EeecC-CCCCeEEEEEecCCCEEEEEeCCc-----cEEEEeCCCC
Q 006424          439 ED-----SKLRILDGVDVIHK-FKGLP-KSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL  493 (645)
Q Consensus       439 ~d-----g~I~iwd~~~~~~~-~~~~~-~~~~i~~v~~sp~~~~l~t~s~dg-----~I~iwd~~~~  493 (645)
                      .+     ..+.+||..+..-. ..... ..... +++ ..+++.++.|+.++     .+.+||..+.
T Consensus       213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA-GVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             BSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCcccceEEEEeCCCCCEeeCCCCCCccccC-eEE-EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            54     46889997643221 11111 11111 122 23677777777553     4788887765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.36  E-value=0.28  Score=47.57  Aligned_cols=182  Identities=9%  Similarity=0.048  Sum_probs=94.7

Q ss_pred             CeEEEEeCC-----CcEEEEecCCCe---EEEEe--cCCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCcEE
Q 006424          299 NYLLSCSMD-----KTVRMWQVGCNQ---CLNVF--DHHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVV  363 (645)
Q Consensus       299 ~~l~s~s~d-----g~I~iwd~~~~~---~~~~~--~~~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~  363 (645)
                      ..++.|+.+     ..+.+||..+++   -...-  .....-.+++..  ++.+++.|+.+     ..+.+||+.+.+-.
T Consensus        64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~  141 (301)
T 2vpj_A           64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWS  141 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence            356666654     468899987765   33222  111111122222  56777777654     35889999887655


Q ss_pred             EeeccCC--CeEEEEEccCCCEEEEEecC-----CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          364 DWADVRD--VISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       364 ~~~~~~~--~v~~l~~sp~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      .......  .-.+++. .+++.++.|+.+     ..+..||+.+....... .....    ......+.+  ++ .+++.
T Consensus       142 ~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~i~v~  212 (301)
T 2vpj_A          142 MLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT-PMATK----RSGAGVALL--ND-HIYVV  212 (301)
T ss_dssp             EEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC-CCSSC----CBSCEEEEE--TT-EEEEE
T ss_pred             ECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC-CCCcc----cccceEEEE--CC-EEEEE
Confidence            4332211  1122222 367777777654     46888998876553221 11111    111222222  33 67777


Q ss_pred             EECC-----CeEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCC
Q 006424          437 TSED-----SKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  493 (645)
Q Consensus       437 ~s~d-----g~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~  493 (645)
                      |+.+     ..+.+||..+..-....  .........+.  -+++.++.|+.+     ..+.+||..+.
T Consensus       213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          213 GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             eCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            7664     46889997643221111  11111112222  367777777755     45778887765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.23  E-value=0.77  Score=45.46  Aligned_cols=149  Identities=11%  Similarity=0.007  Sum_probs=82.7

Q ss_pred             CCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe-------eccCCCeEEEEEccC---CCEEEEEe---cCCeE
Q 006424          327 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-------ADVRDVISAICYIPD---GKGFIVGS---ITGTC  393 (645)
Q Consensus       327 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~~~~~~v~~l~~sp~---g~~l~~g~---~dg~i  393 (645)
                      -...+.++|.| ++.++++--..|.|++++..++....+       .........|+++|+   +..|++..   .++.|
T Consensus        31 L~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           31 LNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            34578999999 888776665589999998766554322       123456889999995   44555432   34556


Q ss_pred             EEEEecCC-----ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC-------------CCeEEEEECCcc----
Q 006424          394 HFYKASGN-----DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-------------DSKLRILDGVDV----  451 (645)
Q Consensus       394 ~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~-------------dg~I~iwd~~~~----  451 (645)
                      .-|.....     ........+..........-..+.|.|+| .++++.+.             .|.|.-.+....    
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~  188 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG  188 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence            66666542     11111111111111112334679999998 55555432             244444443311    


Q ss_pred             -----eeeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424          452 -----IHKFKGLPKSGSQMSASFTTTGKHIISI  479 (645)
Q Consensus       452 -----~~~~~~~~~~~~i~~v~~sp~~~~l~t~  479 (645)
                           ...+. ..+. ....++|+|+|.+.++=
T Consensus       189 nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d  219 (347)
T 3das_A          189 NPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             CSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEE
T ss_pred             CCCCCCeEEe-eCCC-CcceEEECCCCCEEEEe
Confidence                 11222 1222 34689999988766553

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.20  E-value=0.12  Score=52.08  Aligned_cols=142  Identities=12%  Similarity=0.183  Sum_probs=92.4

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEEecCC-----CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-------------
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNVFDHH-----NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-------------  361 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~-----~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~-------------  361 (645)
                      .++.+- ++.||.-++..+...+.+...     ..+..+..+| +|++||..+ +..|.|-.+..+.             
T Consensus        34 ~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q  110 (452)
T 3pbp_A           34 RIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ  110 (452)
T ss_dssp             EEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred             EEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence            444433 378888888754444444332     2578899999 999999886 4688998876221             


Q ss_pred             EEEee--c----cCCCeEEEEEcc---CCCEEEEEecCCeEEEEEecCCc-eeeeEEeecc---ccccCCCCeEEEEEcC
Q 006424          362 VVDWA--D----VRDVISAICYIP---DGKGFIVGSITGTCHFYKASGND-LKLEKVDFHD---RKKTSGNKITGIQFSR  428 (645)
Q Consensus       362 ~~~~~--~----~~~~v~~l~~sp---~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~---~~~~~~~~i~~i~~s~  428 (645)
                      +..+.  .    ...+|..+.|+|   .+..|++-..|+.|++||+.... .+. .+....   ........|.+++|.+
T Consensus       111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~  189 (452)
T 3pbp_A          111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK  189 (452)
T ss_dssp             EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT
T ss_pred             eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC
Confidence            11111  1    246799999999   45689999999999999998522 222 111000   0011226789999999


Q ss_pred             CCCcEEEEEE--CCCeEEEE
Q 006424          429 DESQRIMITS--EDSKLRIL  446 (645)
Q Consensus       429 ~g~~~l~~~s--~dg~I~iw  446 (645)
                      ++ -.|.+.+  ++|.|+-.
T Consensus       190 ~~-lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          190 DG-LTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TS-SCEEEEECTTSCEEEEE
T ss_pred             CC-cEEEEEecCCCCCEEEE
Confidence            76 6666655  77888754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.14  E-value=1.3  Score=44.66  Aligned_cols=192  Identities=10%  Similarity=0.124  Sum_probs=120.3

Q ss_pred             EcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-cEE-Eeecc----
Q 006424          295 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVV-DWADV----  368 (645)
Q Consensus       295 ~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~-~~~-~~~~~----  368 (645)
                      .+|...+++--...++.++|+++.+.++.+.....|.-=.|-.  .+.|+..+ +..|+-|++.+. ... .+..|    
T Consensus        73 MnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~  149 (494)
T 1bpo_A           73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA  149 (494)
T ss_dssp             ECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             eCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheecchhcc
Confidence            3555433332236899999999999999998777888888874  56666665 568999999652 222 23222    


Q ss_pred             CCCeEEEEEccCCCEEEEEe-------cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC--CCCcEEEEEEC
Q 006424          369 RDVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR--DESQRIMITSE  439 (645)
Q Consensus       369 ~~~v~~l~~sp~g~~l~~g~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~--~g~~~l~~~s~  439 (645)
                      ...|..-..+++.++++..+       -.|.+.+|..+......    +.++    ......+.+..  ....++..+..
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~----ieGh----aa~F~~~~~~g~~~~~~lf~fa~r  221 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAVR  221 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE----ECCS----EEEEEEEECTTCSSEEEEEEEEEC
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch----heee----eeeeEEEecCCCCCCceEEEEEEe
Confidence            34577777888999877543       24678888887654322    1221    11222222211  11123444443


Q ss_pred             C---CeEEEEECCcc---eeeE-----e----ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCC
Q 006424          440 D---SKLRILDGVDV---IHKF-----K----GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS  497 (645)
Q Consensus       440 d---g~I~iwd~~~~---~~~~-----~----~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~  497 (645)
                      .   +.+.|.++...   ...+     .    ......-..++..|+.-..++.-+.-|.|++||+.++....
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~  294 (494)
T 1bpo_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (494)
T ss_dssp             STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence            2   78899887532   1111     1    11224456788899998999999999999999999986433

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.99  E-value=1.1  Score=43.50  Aligned_cols=171  Identities=9%  Similarity=0.007  Sum_probs=86.3

Q ss_pred             EEEEecCCCeEEEEecCCCc--EEEEEEeeCCCCEEEEEeCC--------CcEEEEeCCCCcEEEeeccCCC--eEEEEE
Q 006424          310 VRMWQVGCNQCLNVFDHHNY--VTCVQFNPIDDNYFISGSID--------GKVRIWGVCEKRVVDWADVRDV--ISAICY  377 (645)
Q Consensus       310 I~iwd~~~~~~~~~~~~~~~--v~~l~~~p~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~--v~~l~~  377 (645)
                      +.+||..+++-...-....+  -.+++..  ++.+++.|+.+        ..+.+||..+.+-........+  -.+++.
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  146 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS  146 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence            77888887765332221111  1122222  56777777742        4589999988765554322211  122222


Q ss_pred             ccCCCEEEEEec-C-----CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC-----eEEEE
Q 006424          378 IPDGKGFIVGSI-T-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS-----KLRIL  446 (645)
Q Consensus       378 sp~g~~l~~g~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg-----~I~iw  446 (645)
                       .+++.++.|+. +     ..+.+||..+....... .....    ......+.+  ++ .+++.|+.++     .+.+|
T Consensus       147 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~y  217 (315)
T 4asc_A          147 -HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA-PMQTA----RSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVY  217 (315)
T ss_dssp             -ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC-CCSSC----CBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEE
T ss_pred             -ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC-CCCCc----hhceEEEEE--CC-EEEEEeccCCCCccceEEEE
Confidence             46667777765 2     46888998876543221 11111    111122222  44 6777776653     57888


Q ss_pred             ECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCCc--------------cEEEEeCCCC
Q 006424          447 DGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDC--------------RVYVWNYDEL  493 (645)
Q Consensus       447 d~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~dg--------------~I~iwd~~~~  493 (645)
                      |..+..-....  .........+.  -++++++.|+.++              .+.+||..+.
T Consensus       218 d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          218 SITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             ECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            87643221111  11111112222  3667777777542              3666776654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.99  E-value=0.96  Score=43.81  Aligned_cols=181  Identities=8%  Similarity=0.043  Sum_probs=94.6

Q ss_pred             eEEEEeCC----CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCcEEEeec
Q 006424          300 YLLSCSMD----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWAD  367 (645)
Q Consensus       300 ~l~s~s~d----g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~  367 (645)
                      .++.|+.+    ..+.+||..+++-...-.  ....-.+++..  ++.+++.|+.+      ..+.+||..+.+-.....
T Consensus        58 lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~  135 (306)
T 3ii7_A           58 VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS  135 (306)
T ss_dssp             EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC
T ss_pred             EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC
Confidence            55666654    568889998876543322  11111122222  67777887765      458999998877555432


Q ss_pred             cCC--CeEEEEEccCCCEEEEEec---------CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          368 VRD--VISAICYIPDGKGFIVGSI---------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       368 ~~~--~v~~l~~sp~g~~l~~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      ...  .-.+++. -+++.++.|+.         -..+.+||+.+....... .....    ...-..+.+  ++ .+++.
T Consensus       136 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~i~v~  206 (306)
T 3ii7_A          136 MLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC-PMIEA----RKNHGLVFV--KD-KIFAV  206 (306)
T ss_dssp             CSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC-CCSSC----CBSCEEEEE--TT-EEEEE
T ss_pred             CcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC-Cccch----hhcceEEEE--CC-EEEEE
Confidence            221  1112222 36666666653         345888998877543221 11111    111122222  43 56777


Q ss_pred             EECC-----CeEEEEECCcceeeEe-e-cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCC
Q 006424          437 TSED-----SKLRILDGVDVIHKFK-G-LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  493 (645)
Q Consensus       437 ~s~d-----g~I~iwd~~~~~~~~~-~-~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~  493 (645)
                      |+.+     ..+.+||..+..-... . .........+.+  ++++++.|+.+     ..+.+||..+.
T Consensus       207 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          207 GGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             CCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             eCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            6543     4688888764321111 1 111112222333  67788888754     46777887665

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.83  E-value=0.58  Score=45.55  Aligned_cols=173  Identities=11%  Similarity=0.028  Sum_probs=87.8

Q ss_pred             CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCcEEEeeccCCC--eEEEEEc
Q 006424          308 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDV--ISAICYI  378 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~--v~~l~~s  378 (645)
                      ..+.+||..+++-...-.  ....-.+++..  ++.+++.|+.+     ..+.+||..+.+-........+  -.+++. 
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-  166 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-  166 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-
Confidence            468889988776443321  11111122222  56777777643     3688999988775554322211  112222 


Q ss_pred             cCCCEEEEEecC-----CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-----CeEEEEEC
Q 006424          379 PDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILDG  448 (645)
Q Consensus       379 p~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-----g~I~iwd~  448 (645)
                      -+++.++.|+.+     ..+..||+.+....... .....    ......+.+  ++ .+++.|+.+     ..+.+||.
T Consensus       167 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~  238 (308)
T 1zgk_A          167 LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT-AMNTI----RSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDV  238 (308)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC-CCSSC----CBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred             ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC-CCCCc----cccceEEEE--CC-EEEEEeCCCCCCccceEEEEeC
Confidence            266677777654     45888998776543221 11111    111222333  43 677777654     56889997


Q ss_pred             CcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCC
Q 006424          449 VDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL  493 (645)
Q Consensus       449 ~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~  493 (645)
                      .+..-....  .........+.  -++++++.|+.+     ..+.+||..+.
T Consensus       239 ~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          239 ETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             TTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            643221111  11111112222  266777777644     34667776654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.80  E-value=4.1  Score=47.45  Aligned_cols=198  Identities=10%  Similarity=0.181  Sum_probs=116.7

Q ss_pred             cEEEEecCCCeEEEEec--CCCcEEEEEEee---CCCCEEEEEe----------CCCcEEEEeCCCCcEEE--eeccCCC
Q 006424          309 TVRMWQVGCNQCLNVFD--HHNYVTCVQFNP---IDDNYFISGS----------IDGKVRIWGVCEKRVVD--WADVRDV  371 (645)
Q Consensus       309 ~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p---~~~~~l~s~s----------~dg~i~vwd~~~~~~~~--~~~~~~~  371 (645)
                      .|++.|..+.+.+..+.  ....+.+++...   ....++++|.          ..|.|++|++..+++..  ....+++
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            47777877777766654  444566665432   1246888886          34789999987554433  4456788


Q ss_pred             eEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECC--
Q 006424          372 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--  449 (645)
Q Consensus       372 v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~--  449 (645)
                      +++++-- +| +|++| ....+++|++...+.........       ..+..+.....+ .++++|..-..|.++..+  
T Consensus       888 v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~~~~~-------~~i~~~~l~~~~-~~I~vgD~~~Sv~~~~y~~~  956 (1158)
T 3ei3_A          888 VYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTECNHY-------NNIMALYLKTKG-DFILVGDLMRSVLLLAYKPM  956 (1158)
T ss_dssp             EEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEEEEEC-------CCSCEEEEEEET-TEEEEEESSBCEEEEEEETT
T ss_pred             CEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEEeecc-------ccEEEEEEeccC-CEEEEEEhhheEEEEEEEcC
Confidence            9998743 35 44444 35799999998654322111111       112222222233 588888887777765432  


Q ss_pred             -cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEE
Q 006424          450 -DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV  519 (645)
Q Consensus       450 -~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v  519 (645)
                       .....+........++++.|-.+ ..++.+..+|.+.+..++....... ..........|+-...++.+
T Consensus       957 ~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~~~~~-~~~~L~~~~~fhlG~~vt~~ 1025 (1158)
T 3ei3_A          957 EGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAATTDE-ERQHLQEVGLFHLGEFVNVF 1025 (1158)
T ss_dssp             TTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTCCSTT-GGGBEEEEEEEECSSCEEEE
T ss_pred             CCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCCCCcc-ccceeeeEEEEeCCCcEeeE
Confidence             23334444456678888888655 4777789999999999876422111 11222233356655555544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.59  E-value=0.12  Score=46.97  Aligned_cols=101  Identities=11%  Similarity=0.104  Sum_probs=64.5

Q ss_pred             cCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCc--------EEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424          288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNPIDDNYFISGSIDGKVRIWGVCE  359 (645)
Q Consensus       288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--------v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  359 (645)
                      ..+.+++|+|++.|++. .+|.+.-.+..+.....-+.....        -.++.|.| ++.+.++  .||.|+-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence            36779999999877777 777766666544222111111112        47889998 8887777  569998887643


Q ss_pred             CcEEEe--------eccCCCeEEEEEccCCCEEEEEecCCeEE
Q 006424          360 KRVVDW--------ADVRDVISAICYIPDGKGFIVGSITGTCH  394 (645)
Q Consensus       360 ~~~~~~--------~~~~~~v~~l~~sp~g~~l~~g~~dg~i~  394 (645)
                      .....+        ...=..+..+.|.|+|.+.++.  ||.++
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            221111        1111357899999999877776  77743

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.33  E-value=0.8  Score=53.32  Aligned_cols=204  Identities=13%  Similarity=0.160  Sum_probs=116.4

Q ss_pred             ccCeEEEEEcCCCeEEEEeCCCcEEEEecCC-CeEEEEec-C----CCcEEEEEEeeCCCCEEEEEe-------CCCcEE
Q 006424          287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-H----HNYVTCVQFNPIDDNYFISGS-------IDGKVR  353 (645)
Q Consensus       287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~-~----~~~v~~l~~~p~~~~~l~s~s-------~dg~i~  353 (645)
                      ..+|..-.|-....|+-.+ +..|.-|++.. ..+++.|. |    ...|..-..++ +.+.++..|       ..|.+.
T Consensus       105 ~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQ  182 (1630)
T 1xi4_A          105 TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQ  182 (1630)
T ss_pred             CCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceee
Confidence            3567777887665444333 35799999963 34555553 2    34566667777 666655433       357899


Q ss_pred             EEeCCCCcEEEeeccCCCeEEEEEcc---CCCEEEEEec---CCeEEEEEecCC-----ceeeeEEeeccccccCCCCeE
Q 006424          354 IWGVCEKRVVDWADVRDVISAICYIP---DGKGFIVGSI---TGTCHFYKASGN-----DLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       354 vwd~~~~~~~~~~~~~~~v~~l~~sp---~g~~l~~g~~---dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      +|....+....+.+|......+....   ....++.+..   .+.+++.++...     ..........-..........
T Consensus       183 LyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv  262 (1630)
T 1xi4_A          183 LYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  262 (1630)
T ss_pred             eeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcce
Confidence            99988777666666655544443321   1223333322   378899888543     111111111111112234456


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ++..++.. ..+..-+.-|.|.++|+.+....+...-...+|...+-+....=++.....|.|.--.++..
T Consensus       263 ~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          263 AMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             EEEecccc-CEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence            77778774 58888999999999999887777766545555544444333233333345555555555443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.30  E-value=4.6  Score=44.78  Aligned_cols=190  Identities=11%  Similarity=0.041  Sum_probs=107.9

Q ss_pred             cCeEEEEEcCCCeEEEEeCCCcEEEEecCC------CeEE--EEec-----CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGC------NQCL--NVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~------~~~~--~~~~-----~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      ..|.++....++.|..|+..+-+.++|..+      ....  ..+.     ....|.++...+ ++++.+.++..+-|..
T Consensus       419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~  497 (758)
T 3ott_A          419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDK  497 (758)
T ss_dssp             SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEE
T ss_pred             ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEE
Confidence            457888877778888888877788888652      1121  1221     223588888887 7777664444556889


Q ss_pred             EeCCCCcEEEeecc----CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          355 WGVCEKRVVDWADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       355 wd~~~~~~~~~~~~----~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      +|..+++...+...    ...+.++....+|... .|+.. -+..|+..+......  ...+   .....|.++... +|
T Consensus       498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~--~~~g---l~~~~i~~i~~~-~g  569 (758)
T 3ott_A          498 INPRTREVTKLFADELTGEKSPNYLLCDEDGLLW-VGFHG-GVMRINPKDESQQSI--SFGS---FSNNEILSMTCV-KN  569 (758)
T ss_dssp             EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEE-EEETT-EEEEECC--CCCCBC--CCCC------CCEEEEEEE-TT
T ss_pred             EeCCCCceEEecCCCcCCCcccceEEECCCCCEE-EEecC-ceEEEecCCCceEEe--cccC---CCccceEEEEEC-CC
Confidence            99988776664321    2457788877777655 45554 477788765543211  1111   112557777764 54


Q ss_pred             CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          431 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                        .|..++..| +..+|..+........ ....+....+......|..|+.+|.++ ++.+
T Consensus       570 --~lWi~t~~G-l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~l~fG~~~Gl~~-f~p~  625 (758)
T 3ott_A          570 --SIWVSTTNG-LWIIDRKTMDARQQNM-TNKRFTSLLFDPKEDCVYLGGADGFGI-SHSN  625 (758)
T ss_dssp             --EEEEEESSC-EEEEETTTCCEEEC---CCCCCSEEEEETTTTEEEEECBSEEEE-EEC-
T ss_pred             --CEEEECCCC-eEEEcCCCceeEEecC-CCCceeeeEEECCCCcEEEecCCceEE-EChh
Confidence              455556555 6777765432221111 122333444544344566677788554 4554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.20  E-value=2.7  Score=41.49  Aligned_cols=242  Identities=12%  Similarity=0.065  Sum_probs=123.2

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      +...-..-+.|+|.|||+++++--..|.|++++..++.......                                    
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~------------------------------------   70 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGE------------------------------------   70 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE------------------------------------
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecc------------------------------------
Confidence            33344567899999999987776668999888755432110000                                    


Q ss_pred             cCCCceeeccCccCeEEEEEcCC----CeEEEE---eCCCcEEEEecCCC----------eEE-EEec--CCCcEEEEEE
Q 006424          276 EESPLQELHGHKGDVLDLAWSNS----NYLLSC---SMDKTVRMWQVGCN----------QCL-NVFD--HHNYVTCVQF  335 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~----~~l~s~---s~dg~I~iwd~~~~----------~~~-~~~~--~~~~v~~l~~  335 (645)
                        . -..+.........|+++|+    +.|+..   ..++.|.-|.+..+          +.+ ..+.  .......|.|
T Consensus        71 --~-~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~f  147 (347)
T 3das_A           71 --V-PGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAF  147 (347)
T ss_dssp             --C-TTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEE
T ss_pred             --c-CceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccC
Confidence              0 0011223456788999985    544432   23455665655431          111 1121  1223467899


Q ss_pred             eeCCCCEEEEEeC-------------CCcEEEEeCCCC---------cEEEeeccCCCeEEEEEccCCCEEEEEe-cCCe
Q 006424          336 NPIDDNYFISGSI-------------DGKVRIWGVCEK---------RVVDWADVRDVISAICYIPDGKGFIVGS-ITGT  392 (645)
Q Consensus       336 ~p~~~~~l~s~s~-------------dg~i~vwd~~~~---------~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~  392 (645)
                      .| ++.++++.+.             .|.|.-.+....         ..+...++. ....++|+|+|.+.++-. .++.
T Consensus       148 gp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~  225 (347)
T 3das_A          148 GP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTW  225 (347)
T ss_dssp             CT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSC
T ss_pred             CC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCC
Confidence            99 8887777542             244554554432         112222333 356789999876555432 2222


Q ss_pred             EEEEEecCCce---eeeEE-----eeccc---cccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee----eEee
Q 006424          393 CHFYKASGNDL---KLEKV-----DFHDR---KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH----KFKG  457 (645)
Q Consensus       393 i~iwd~~~~~~---~~~~~-----~~~~~---~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~----~~~~  457 (645)
                      -.|.-+.....   +...-     .+...   ...+......+.|.. | .+++..-..+.|....+.....    ....
T Consensus       226 deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l  303 (347)
T 3das_A          226 DELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAAADPQAFL  303 (347)
T ss_dssp             EEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEESSCCEEES
T ss_pred             ceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCceecceEEee
Confidence            22222221111   00000     00000   000012456777764 3 5666666666666655432211    1111


Q ss_pred             cCCCCCeEEEEEecCCCEEEEEe
Q 006424          458 LPKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       458 ~~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      ....+.+..+...|||.++++.+
T Consensus       304 ~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          304 EGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TTTSSCEEEEEEEETTEEEEEEC
T ss_pred             cCCCCCccEEEECCCCcEEEEEc
Confidence            22346889999999998777654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.20  E-value=1.1  Score=46.43  Aligned_cols=109  Identities=10%  Similarity=0.106  Sum_probs=61.9

Q ss_pred             CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec---------cCCCeEEEEEccC---CCEEEEEec------
Q 006424          328 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---------VRDVISAICYIPD---GKGFIVGSI------  389 (645)
Q Consensus       328 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---------~~~~v~~l~~sp~---g~~l~~g~~------  389 (645)
                      ...+.++|.| +++++++-...+.|++++..++....+..         .......|+|+|+   +..|++...      
T Consensus        27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            3567999999 88877665443578888876554433211         2456779999996   556665543      


Q ss_pred             -------CCeEEEEEecCCceee--eEEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424          390 -------TGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  438 (645)
Q Consensus       390 -------dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s  438 (645)
                             ...|.-|+........  ....+.............+.|.|+| .++++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence                   2356666654332111  1111111111112457899999998 4555433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.94  E-value=4  Score=42.10  Aligned_cols=32  Identities=16%  Similarity=0.129  Sum_probs=23.2

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 006424          200 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS  231 (645)
Q Consensus       200 ~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~  231 (645)
                      -..-+.|+|.|+|+++++-...+.|++++..+
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~   57 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPES   57 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCC
Confidence            34578999999999777755445687776543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.81  E-value=2.7  Score=40.84  Aligned_cols=130  Identities=8%  Similarity=0.069  Sum_probs=67.8

Q ss_pred             EEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC-------CcEEEEeCCCCcEEEeeccCCCe--EEEEEc
Q 006424          310 VRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-------GKVRIWGVCEKRVVDWADVRDVI--SAICYI  378 (645)
Q Consensus       310 I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~v--~~l~~s  378 (645)
                      +.+||..+++-...-.  ....-.+++..  ++.+++.|+.+       ..+.+||..+.+-........+.  .+++. 
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-  156 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-  156 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-
Confidence            7788887776543322  11111122222  57777787754       24888999887755543322211  12222 


Q ss_pred             cCCCEEEEEec------CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-----CeEEEEE
Q 006424          379 PDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILD  447 (645)
Q Consensus       379 p~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-----g~I~iwd  447 (645)
                      .+++.++.|+.      -..+.+||+.+....... .....    ......+.+  ++ .+++.|+.+     ..+.+||
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd  228 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA-PMKTP----RSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFD  228 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC-CCSSC----CBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEE
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC-CCCCC----cccceEEEE--CC-EEEEEcCcCCCCccceEEEEE
Confidence            46667777654      235889998876553221 11111    111122222  33 677777643     3577888


Q ss_pred             CCc
Q 006424          448 GVD  450 (645)
Q Consensus       448 ~~~  450 (645)
                      ..+
T Consensus       229 ~~~  231 (318)
T 2woz_A          229 LKT  231 (318)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            663

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.75  E-value=2.1  Score=42.15  Aligned_cols=92  Identities=7%  Similarity=-0.047  Sum_probs=55.1

Q ss_pred             eCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEee--------CCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCC
Q 006424          305 SMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNP--------IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV  371 (645)
Q Consensus       305 s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p--------~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  371 (645)
                      +.||.|..++..+|.....+.     ...++.. .-.|        ..+..+++|+.+|.+...|+++|+.+........
T Consensus        64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~  142 (339)
T 2be1_A           64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK  142 (339)
T ss_dssp             STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred             CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence            589999999988886554443     2222221 1000        0356788999999999999999998875544322


Q ss_pred             e--------EEEEEc-----cCCCEEEEEecCCeEEEEE
Q 006424          372 I--------SAICYI-----PDGKGFIVGSITGTCHFYK  397 (645)
Q Consensus       372 v--------~~l~~s-----p~g~~l~~g~~dg~i~iwd  397 (645)
                      .        .|....     ..+..++.+..+..+.+.+
T Consensus       143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS  181 (339)
T ss_dssp             CC--------------------CCEEEEEEEEEECEECC
T ss_pred             cccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence            1        011110     1235677777776666666

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.40  E-value=10  Score=44.25  Aligned_cols=222  Identities=9%  Similarity=0.051  Sum_probs=116.5

Q ss_pred             cCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEE--EecCCCcEEEEEEeeCC-----CCEEEEEeC-CCcEEEEeCCC
Q 006424          288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN--VFDHHNYVTCVQFNPID-----DNYFISGSI-DGKVRIWGVCE  359 (645)
Q Consensus       288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~--~~~~~~~v~~l~~~p~~-----~~~l~s~s~-dg~i~vwd~~~  359 (645)
                      ..|...+.+. .+++.++ ++.+.++.++.++...  .......|.|+++.|..     .+++++|.. |++++++++.+
T Consensus       514 ~~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          514 KNISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             CCCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             CEEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence            3566666543 4555554 6788888887664332  23356789999998622     368999997 99999999988


Q ss_pred             CcEEEeecc--CCCeEEEEEcc--CCCEEEEEecCCeEEEEEecC--CceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424          360 KRVVDWADV--RDVISAICYIP--DGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  433 (645)
Q Consensus       360 ~~~~~~~~~--~~~v~~l~~sp--~g~~l~~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~  433 (645)
                      .+.+.....  .....++.+..  ...+|.+|-.||.+.-+.+..  +..........+.     .++.=..+...|...
T Consensus       592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~-----~pv~L~~~~~~~~~~  666 (1158)
T 3ei3_A          592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGT-----QPTVLRTFRSLSTTN  666 (1158)
T ss_dssp             CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCS-----SCCEEEEEESSSCEE
T ss_pred             CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCC-----CceEEEEEeeCCcee
Confidence            666654333  23455555443  335788999999987776653  2222222222221     234333344344334


Q ss_pred             EEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecC--CCEEEEEeCCccEEEEeCCCCCcC--CCcccCCcceeee
Q 006424          434 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT--GKHIISIGDDCRVYVWNYDELCFP--SSKQKNSVRSCEH  509 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~--~~~l~t~s~dg~I~iwd~~~~~~~--~~~~~~~~~~~~~  509 (645)
                      +++.+ +....++..... ..+.......--....|+..  ..-++..+ ++.++|..++.....  ...........+.
T Consensus       667 V~a~s-~rp~liy~~~~~-l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~  743 (1158)
T 3ei3_A          667 VFACS-DRPTVIYSSNHK-LVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKIC  743 (1158)
T ss_dssp             EEEES-SSCEEEEESSSS-EEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEE
T ss_pred             EEEEC-CCCEEEEEcCCc-eEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEE
Confidence            44444 333334433322 22222212212233345432  23344333 456999888654211  1111222334445


Q ss_pred             eecCCcEEEE
Q 006424          510 FFSEGVSVAV  519 (645)
Q Consensus       510 ~~~~g~~~~v  519 (645)
                      ++++....++
T Consensus       744 y~~~~~~~~v  753 (1158)
T 3ei3_A          744 YQEVSQCFGV  753 (1158)
T ss_dssp             EEGGGTEEEE
T ss_pred             EcCCCCEEEE
Confidence            5655554444

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.34  E-value=1.1  Score=44.43  Aligned_cols=88  Identities=8%  Similarity=0.109  Sum_probs=49.3

Q ss_pred             CcEEEEecCCCeEEEEecCC-C-c-EEEEEEeeCCCCEEEEEeCC-----------------------------------
Q 006424          308 KTVRMWQVGCNQCLNVFDHH-N-Y-VTCVQFNPIDDNYFISGSID-----------------------------------  349 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~~~-~-~-v~~l~~~p~~~~~l~s~s~d-----------------------------------  349 (645)
                      ..+.+||..+.+-...-... . . -.++.. . ++.+++.|+.+                                   
T Consensus        86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (357)
T 2uvk_A           86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED  163 (357)
T ss_dssp             CCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred             ccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence            46889999877644332211 1 1 112222 3 77888888864                                   


Q ss_pred             ----CcEEEEeCCCCcEEEeeccCC--Ce-EEEEEccCCCEEEEEec------CCeEEEEEe
Q 006424          350 ----GKVRIWGVCEKRVVDWADVRD--VI-SAICYIPDGKGFIVGSI------TGTCHFYKA  398 (645)
Q Consensus       350 ----g~i~vwd~~~~~~~~~~~~~~--~v-~~l~~sp~g~~l~~g~~------dg~i~iwd~  398 (645)
                          ..+.+||..+.+-........  .- .+++. -+++.++.|+.      ...+..||+
T Consensus       164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred             cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence                478999998876554432221  11 23333 25666666653      345677776

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.22  E-value=4.3  Score=39.26  Aligned_cols=160  Identities=7%  Similarity=-0.013  Sum_probs=88.2

Q ss_pred             CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe----CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCE
Q 006424          308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG  383 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s----~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~  383 (645)
                      ..|+..+++.++........    +..|++ +++.|+-..    .+..|+..++.+.....+..+..    ..++++++.
T Consensus        88 ~~Iy~i~~dg~~~~~l~~~~----~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~  158 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLDPDP----CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRY  158 (302)
T ss_dssp             EEEEEEETTSCCCEEEECSC----EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTE
T ss_pred             CeEEEEeCCCCcceEeecCC----ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCE
Confidence            45777777655433322221    226777 777777665    34456666777655555554433    346788888


Q ss_pred             EEEEec-CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC--CeEEEEECCcceeeEeecCC
Q 006424          384 FIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--SKLRILDGVDVIHKFKGLPK  460 (645)
Q Consensus       384 l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d--g~I~iwd~~~~~~~~~~~~~  460 (645)
                      |+-.+. ...|...++.+....  .+ ..+       ... ..+.|++ .+|+-...+  ..|..-++....... .  .
T Consensus       159 iy~t~~g~~~Iy~~~l~g~~~~--~l-~~~-------~~~-~~~~P~g-~~iy~t~~~~~~~I~~~~ldG~~~~~-L--t  223 (302)
T 3s25_A          159 FYYNNPKNGQLYRYDTASQSEA--LF-YDC-------NCY-KPVVLDD-TNVYYMDVNRDNAIVHVNINNPNPVV-L--T  223 (302)
T ss_dssp             EEEECTTTCCEEEEETTTTEEE--EE-ECS-------CEE-EEEEEET-TEEEEEEGGGTTEEEEECSSSCCCEE-C--S
T ss_pred             EEEEeCCCceEEEEECCCCCEE--EE-eCC-------Ccc-ceeeecC-CEEEEEEcCCCcEEEEEECCCCCeEE-E--e
Confidence            886655 567777777665432  22 121       122 2355887 455544433  356555554222111 1  1


Q ss_pred             CCCeEEEEEecCCCEEEEEeC--CccEEEEeCCCC
Q 006424          461 SGSQMSASFTTTGKHIISIGD--DCRVYVWNYDEL  493 (645)
Q Consensus       461 ~~~i~~v~~sp~~~~l~t~s~--dg~I~iwd~~~~  493 (645)
                      ...+  ..|+|++++|+-++.  .+.|..-+++..
T Consensus       224 ~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          224 EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            2233  347889998887643  356666677654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.17  E-value=1.6  Score=43.37  Aligned_cols=145  Identities=12%  Similarity=0.116  Sum_probs=77.4

Q ss_pred             cEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-e-------eccCCCeEEEEEccC---CCEEEEEec--------
Q 006424          329 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W-------ADVRDVISAICYIPD---GKGFIVGSI--------  389 (645)
Q Consensus       329 ~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~-------~~~~~~v~~l~~sp~---g~~l~~g~~--------  389 (645)
                      ..+.++|.| +++.++++...|.|++++... .... +       .........++++|+   +..|++...        
T Consensus        19 ~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLP-DNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECS-TTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcC-CCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            468899999 888344556679999998543 2211 1       112345789999996   555555532        


Q ss_pred             CCeEEEEEecCCc--eeeeEEeecccc--ccCCCCeEEEEEcCCCCcEEEEEEC-------------CCeEEEEECCcc-
Q 006424          390 TGTCHFYKASGND--LKLEKVDFHDRK--KTSGNKITGIQFSRDESQRIMITSE-------------DSKLRILDGVDV-  451 (645)
Q Consensus       390 dg~i~iwd~~~~~--~~~~~~~~~~~~--~~~~~~i~~i~~s~~g~~~l~~~s~-------------dg~I~iwd~~~~-  451 (645)
                      ...|..|+.....  .......+....  .........+.|.|+| .++++.+.             .|.|.-++.... 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence            2356666665432  111111111111  0111223579999998 55444433             245666664321 


Q ss_pred             -------------eeeEeecCCCCCeEEEEEec-CCCEEEE
Q 006424          452 -------------IHKFKGLPKSGSQMSASFTT-TGKHIIS  478 (645)
Q Consensus       452 -------------~~~~~~~~~~~~i~~v~~sp-~~~~l~t  478 (645)
                                   ...+..  .......++|+| +|++.++
T Consensus       176 p~~npf~~~~~~~~~i~a~--G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSY--GIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEE--CCSEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCcCCCCCCccEEEE--cCcCccceEEECCCCCEEEE
Confidence                         112221  123467899999 5554443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.10  E-value=4.2  Score=38.97  Aligned_cols=174  Identities=10%  Similarity=0.025  Sum_probs=90.9

Q ss_pred             CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCc---EEEeeccCC--CeEEE
Q 006424          308 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKR---VVDWADVRD--VISAI  375 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~---~~~~~~~~~--~v~~l  375 (645)
                      ..+.+||+.+++-...-.  ....-.+++. . ++.+++.|+.+     ..+.+||..+.+   -........  .-.++
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence            368889988776443222  1111112222 2 67777877755     469999998876   444322111  11122


Q ss_pred             EEccCCCEEEEEecC-----CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-----CeEEE
Q 006424          376 CYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRI  445 (645)
Q Consensus       376 ~~sp~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-----g~I~i  445 (645)
                      +. .+++.++.|+.+     ..+.+||+.+....... ......    .....+.+  ++ .+++.|+.+     ..+.+
T Consensus       109 ~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r----~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~  179 (301)
T 2vpj_A          109 TT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG-DMQTAR----EGAGLVVA--SG-VIYCLGGYDGLNILNSVEK  179 (301)
T ss_dssp             EE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE-ECSSCC----BSCEEEEE--TT-EEEEECCBCSSCBCCCEEE
T ss_pred             EE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECC-CCCCCc----ccceEEEE--CC-EEEEECCCCCCcccceEEE
Confidence            22 256777777654     36888898776653321 111111    11122222  44 677777654     46888


Q ss_pred             EECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCCC
Q 006424          446 LDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC  494 (645)
Q Consensus       446 wd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~~  494 (645)
                      ||..+..-....  .........+.  -+++.++.|+.+     ..+.+||..+..
T Consensus       180 ~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          180 YDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             EETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            997643222111  11111112222  367777777764     468899987764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.85  E-value=3.6  Score=39.55  Aligned_cols=174  Identities=12%  Similarity=0.123  Sum_probs=89.0

Q ss_pred             CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCcEEEeeccCCC--eEEEEEc
Q 006424          308 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDV--ISAICYI  378 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~--v~~l~~s  378 (645)
                      ..+..||+.+.+-...-.  ....-.+++..  ++.+++.|+.+     ..+.+||..+.+-........+  -.+++. 
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-  106 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-  106 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-
Confidence            357888888776433321  11111122222  57777777754     3588999988775554332211  122222 


Q ss_pred             cCCCEEEEEecCC-----eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-------CeEEEE
Q 006424          379 PDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-------SKLRIL  446 (645)
Q Consensus       379 p~g~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-------g~I~iw  446 (645)
                      -+++.++.|+.++     .+.+||+.+....... .....    ......+.+  ++ .+++.|+.+       ..+.+|
T Consensus       107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~y  178 (302)
T 2xn4_A          107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA-PMNTR----RSSVGVGVV--GG-LLYAVGGYDVASRQCLSTVECY  178 (302)
T ss_dssp             ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC-CCSSC----CBSCEEEEE--TT-EEEEECCEETTTTEECCCEEEE
T ss_pred             ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC-CCCCc----ccCceEEEE--CC-EEEEEeCCCCCCCccccEEEEE
Confidence            2667777777653     5778888766543221 11111    111122222  33 566666542       458889


Q ss_pred             ECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCCC
Q 006424          447 DGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC  494 (645)
Q Consensus       447 d~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~~  494 (645)
                      |..+..-....  .........+.  -++++++.|+.+     ..+.+||..+..
T Consensus       179 d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          179 NATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             eCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            87643221111  11111112222  367777787754     368889987753

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.83  E-value=3.2  Score=48.48  Aligned_cols=192  Identities=10%  Similarity=0.126  Sum_probs=115.1

Q ss_pred             cCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-EEE-eecc----C
Q 006424          296 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVD-WADV----R  369 (645)
Q Consensus       296 s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~-~~~-~~~~----~  369 (645)
                      +|...+++--...++.|+|+++...+..+....+|.-=.|-  +.+.|+..+ +..|+-|++.+.. +.. +..|    .
T Consensus        74 nP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~  150 (1630)
T 1xi4_A           74 NPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG  150 (1630)
T ss_pred             CCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhccc
Confidence            45544444444689999999999999998887788877887  456666555 4679999996522 221 2222    3


Q ss_pred             CCeEEEEEccCCCEEEEEe-------cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc--CCCCcEEEEEEC-
Q 006424          370 DVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMITSE-  439 (645)
Q Consensus       370 ~~v~~l~~sp~g~~l~~g~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s--~~g~~~l~~~s~-  439 (645)
                      ..|..-..+++.++++..+       -.|.+.+|.........    +.++    ......+...  +..+.++..+.. 
T Consensus       151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~----iegh----a~~F~~~~~~~~~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAVRG  222 (1630)
T ss_pred             CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh----hhHh----HhhhheeccCCCCCCceEEEEEEec
Confidence            5577777788888877543       34788888886544321    1111    1111111111  111122222222 


Q ss_pred             --CCeEEEEECCcc---eeeEee---------cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCC
Q 006424          440 --DSKLRILDGVDV---IHKFKG---------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS  498 (645)
Q Consensus       440 --dg~I~iwd~~~~---~~~~~~---------~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~  498 (645)
                        .+.+.|.++...   ...+..         .....-..++..|+.-..+..-+.-|.|+++|+.++.....
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence              368888886432   111110         11123345677788888888889999999999999864443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.83  E-value=3.6  Score=39.56  Aligned_cols=183  Identities=9%  Similarity=0.042  Sum_probs=94.3

Q ss_pred             eEEEEeC--CCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC----CcEEEEeCCCCcEEEeeccCCC
Q 006424          300 YLLSCSM--DKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID----GKVRIWGVCEKRVVDWADVRDV  371 (645)
Q Consensus       300 ~l~s~s~--dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~  371 (645)
                      .++.|+.  ...+.+||..+++-...-.  ....-.++.. - ++.+++.|+.+    ..+.+||..+.+-........+
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            4455554  3578899988876543321  1111112222 2 67777888755    5688999988775554322211


Q ss_pred             --eEEEEEccCCCEEEEEecC------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC----
Q 006424          372 --ISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE----  439 (645)
Q Consensus       372 --v~~l~~sp~g~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~----  439 (645)
                        -.+++ .-+++.++.|+.+      ..+.+||..+...... -.....    ......+.+  ++ .+++.|+.    
T Consensus        92 r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~~  162 (306)
T 3ii7_A           92 RDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQ----RCSHGMVEA--NG-LIYVCGGSLGNN  162 (306)
T ss_dssp             CBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSC----CBSCEEEEE--TT-EEEEECCEESCT
T ss_pred             ccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCC----cceeEEEEE--CC-EEEEECCCCCCC
Confidence              11222 2266777777755      4688899887654322 111111    111122222  43 56666653    


Q ss_pred             -----CCeEEEEECCcceeeEee-cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCCC
Q 006424          440 -----DSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC  494 (645)
Q Consensus       440 -----dg~I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~~  494 (645)
                           -..+.+||..+..-.... ......-.+++. -++++++.|+.+     ..+.+||..+..
T Consensus       163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             CcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence                 345888987643221111 111111112222 266777777653     468889987764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.65  E-value=0.31  Score=48.02  Aligned_cols=108  Identities=9%  Similarity=0.052  Sum_probs=68.7

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCC--CcEEEEEEe--eCCCCEEEEE-eCCCcEEEEeCCCCcEEEeeccCCCe
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFN--PIDDNYFISG-SIDGKVRIWGVCEKRVVDWADVRDVI  372 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~v~~l~~~--p~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~v  372 (645)
                      ++.++.++.||.|.-.|..+|+..-.+...  .++....-.  +.++..++.. +.||.|+.++..++...........+
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            368999999999999999999999888644  222221100  1022333333 57999999999887544321111111


Q ss_pred             E--EEEEc-----------cCCCEEEEEecCCeEEEEEecCCceee
Q 006424          373 S--AICYI-----------PDGKGFIVGSITGTCHFYKASGNDLKL  405 (645)
Q Consensus       373 ~--~l~~s-----------p~g~~l~~g~~dg~i~iwd~~~~~~~~  405 (645)
                      .  -+...           ..+..+++|+.+|.+...|+.+++...
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W  135 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS  135 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence            0  01110           145578899999999999999888653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.03  E-value=13  Score=38.79  Aligned_cols=193  Identities=13%  Similarity=0.127  Sum_probs=105.8

Q ss_pred             eEEEEe-CCCcEEEEecCCCeEEEEec--CCCcEEEEEEe--eCCCCEEEEEeC-------CCcE---------E---EE
Q 006424          300 YLLSCS-MDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFN--PIDDNYFISGSI-------DGKV---------R---IW  355 (645)
Q Consensus       300 ~l~s~s-~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~--p~~~~~l~s~s~-------dg~i---------~---vw  355 (645)
                      +|+.-. .+..|-.-+++..++-+.+.  ....+.++.|.  | +..+++.++.       ||..         .   ..
T Consensus       144 ylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~i  222 (638)
T 3sbq_A          144 YLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAI  222 (638)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEE
T ss_pred             EEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEEEEE
Confidence            455544 45677788888887766554  55678888886  5 6667777764       2321         0   11


Q ss_pred             eCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC---------------eEEEEEec-------CCcee------eeE
Q 006424          356 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---------------TCHFYKAS-------GNDLK------LEK  407 (645)
Q Consensus       356 d~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg---------------~i~iwd~~-------~~~~~------~~~  407 (645)
                      |..+.++.......+....+...++|++.++.+.+.               .+.++++.       .++..      ...
T Consensus       223 D~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V  302 (638)
T 3sbq_A          223 DAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV  302 (638)
T ss_dssp             ETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred             cCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence            222222211111122333455567777777765332               35556542       01000      001


Q ss_pred             Eeecccc--c-------cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCccee-----------e-EeecCCCCCeEE
Q 006424          408 VDFHDRK--K-------TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----------K-FKGLPKSGSQMS  466 (645)
Q Consensus       408 ~~~~~~~--~-------~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~-----------~-~~~~~~~~~i~~  466 (645)
                      +......  .       ........+..+|||...++.+--+.++.++|......           . .....-......
T Consensus       303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH  382 (638)
T 3sbq_A          303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH  382 (638)
T ss_dssp             EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE
T ss_pred             EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE
Confidence            1110000  0       01133446789999965556666689999999763211           1 111123445678


Q ss_pred             EEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          467 ASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       467 v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .+|+++|.-..|---|..|.-|++...
T Consensus       383 t~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          383 TTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             EEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             EEECCCCceEeeeeecceEEEEeccHH
Confidence            899999955555558999999999753

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.80  E-value=4.7  Score=38.86  Aligned_cols=173  Identities=10%  Similarity=0.030  Sum_probs=89.1

Q ss_pred             CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeC----C-----CcEEEEeCCCCcEEEeeccC---CCeE
Q 006424          308 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSI----D-----GKVRIWGVCEKRVVDWADVR---DVIS  373 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~----d-----g~i~vwd~~~~~~~~~~~~~---~~v~  373 (645)
                      ..+.+||..+++-...-.  ....-.+++..  ++.+++.|+.    +     ..+.+||..+.+-.......   ....
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  116 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG  116 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence            357888887766443321  11111122222  5667777765    2     46889999887755543221   1122


Q ss_pred             EEEEccCCCEEEEEecC-----CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-----CeE
Q 006424          374 AICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKL  443 (645)
Q Consensus       374 ~l~~sp~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-----g~I  443 (645)
                      .+.  -+++.++.|+.+     ..+.+||..+....... .....    ......+.+  ++ .+++.|+.+     ..+
T Consensus       117 ~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~----r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~  186 (308)
T 1zgk_A          117 VGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PMLTR----RIGVGVAVL--NR-LLYAVGGFDGTNRLNSA  186 (308)
T ss_dssp             EEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCSSC----CBSCEEEEE--TT-EEEEECCBCSSCBCCCE
T ss_pred             EEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCCcc----ccceEEEEE--CC-EEEEEeCCCCCCcCceE
Confidence            222  266677776643     36788888776543221 11111    111122223  43 677777654     468


Q ss_pred             EEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCCC
Q 006424          444 RILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC  494 (645)
Q Consensus       444 ~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~~  494 (645)
                      .+||..+..-....  ......-..+.+  ++++++.|+.+     ..+.+||+.+..
T Consensus       187 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          187 ECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             EEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            88887643221111  111111222222  67777777754     568999988764

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=91.79  E-value=12  Score=37.60  Aligned_cols=158  Identities=10%  Similarity=-0.019  Sum_probs=79.1

Q ss_pred             cCeEEEEEcC--CCeEEEEeCCC----cEEEEecCCCeEEEEec---------------CCCcEEEEEEeeCC-CCEEEE
Q 006424          288 GDVLDLAWSN--SNYLLSCSMDK----TVRMWQVGCNQCLNVFD---------------HHNYVTCVQFNPID-DNYFIS  345 (645)
Q Consensus       288 ~~V~~l~~s~--~~~l~s~s~dg----~I~iwd~~~~~~~~~~~---------------~~~~v~~l~~~p~~-~~~l~s  345 (645)
                      ..|.+|++.|  .+.+..++..|    .|...+ +.++.-..+.               ....|.++++.|.+ .+.+..
T Consensus        55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            4688999987  45666666555    444332 2232211111               11257788998744 566666


Q ss_pred             EeCCCcEEEEeCCCCcEEEeec-------------------cCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceee
Q 006424          346 GSIDGKVRIWGVCEKRVVDWAD-------------------VRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKL  405 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~~~~~~~-------------------~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~  405 (645)
                      ++..+.|...+-....-.....                   ....+.+|.++|. ...++++..++.+...+-.......
T Consensus       134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~  213 (394)
T 3b7f_A          134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKP  213 (394)
T ss_dssp             EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEE
T ss_pred             EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceE
Confidence            6666666655433333222211                   1235788999883 4556666655554443222222211


Q ss_pred             eEEeecccc-c----cCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424          406 EKVDFHDRK-K----TSGNKITGIQFSRDESQRIMITSEDSKLRILD  447 (645)
Q Consensus       406 ~~~~~~~~~-~----~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd  447 (645)
                      ......... .    .....+.++.+.|.....++++...+ |...+
T Consensus       214 ~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~  259 (394)
T 3b7f_A          214 LNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD  259 (394)
T ss_dssp             CCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred             CCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence            100000000 0    00134889999987445677776555 44443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=91.70  E-value=9.3  Score=36.36  Aligned_cols=182  Identities=12%  Similarity=0.019  Sum_probs=95.4

Q ss_pred             CeEEEEEcCCCeEEEEeCCCcEEEEecCCC-eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CcEEEee
Q 006424          289 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWA  366 (645)
Q Consensus       289 ~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~  366 (645)
                      .|..++......++. . ||.|..|-.... +.-........|..++...   .+.+.-. ||.|+.|-... +++-...
T Consensus        64 ~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~  137 (282)
T 3qhy_B           64 GVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA  137 (282)
T ss_dssp             CCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred             CEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence            566666554444444 4 899999965432 2111111234677777653   3444445 99999997644 3221112


Q ss_pred             ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424          367 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  446 (645)
Q Consensus       367 ~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw  446 (645)
                      .....|..++...+  ..++-. ||.++.|-.........    +.   .....|..++.-..  ..++.  .||.|+.|
T Consensus       138 ~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~----p~---~~~~~v~~i~~G~~--hs~al--~~G~v~~w  203 (282)
T 3qhy_B          138 EAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTV----PA---EAQSGVDDVAGGIF--HSLAL--KDGKVIAW  203 (282)
T ss_dssp             GGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSC----CG---GGGSSEEEEEECSS--EEEEE--ETTEEEEE
T ss_pred             cCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCC----ce---ecCCCeEEEEecCC--EEEEE--ECCeEEEE
Confidence            23345666655432  233333 79998887654332110    10   01256777777655  34444  59999999


Q ss_pred             ECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          447 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       447 d~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      -....-+.-........|..++..... .++. . ||.|+.|-.+..
T Consensus       204 G~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~~  247 (282)
T 3qhy_B          204 GDNRYKQTTVPTEALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSRT  247 (282)
T ss_dssp             ECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE-E-TTEEEEESTTCC
T ss_pred             ECCCCCCCCCCcccCCCceEEEcCCCE-EEEE-E-CCEEEEecCCCC
Confidence            744211110011122356666654433 3333 3 999999976543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.24  E-value=9.9  Score=41.62  Aligned_cols=102  Identities=17%  Similarity=0.242  Sum_probs=61.3

Q ss_pred             eEEEEeCC------CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCcEEEeec--
Q 006424          300 YLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVDWAD--  367 (645)
Q Consensus       300 ~l~s~s~d------g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~--  367 (645)
                      .++.|+.+      ..+.+||..+.+-...-.  ....-.+++... ++.+++.|+.++  .+.+||..+..-.....  
T Consensus       454 lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g  532 (695)
T 2zwa_A          454 LLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD  532 (695)
T ss_dssp             EEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSS
T ss_pred             EEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCC
Confidence            55666643      357888988765443322  111112233323 678888888655  69999998877555432  


Q ss_pred             ----cCCCeEEEEEccC-CCEEEEEec--C-----CeEEEEEecCCc
Q 006424          368 ----VRDVISAICYIPD-GKGFIVGSI--T-----GTCHFYKASGND  402 (645)
Q Consensus       368 ----~~~~v~~l~~sp~-g~~l~~g~~--d-----g~i~iwd~~~~~  402 (645)
                          ......++.+..+ ++.++.|+.  +     +.+..||+.+..
T Consensus       533 ~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          533 EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence                1222334555555 667777765  2     468899998877

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.72  E-value=12  Score=35.94  Aligned_cols=141  Identities=9%  Similarity=-0.022  Sum_probs=78.8

Q ss_pred             EEEeeCCCCEEEEEeCC--------------CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe--cCCe--EE
Q 006424          333 VQFNPIDDNYFISGSID--------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS--ITGT--CH  394 (645)
Q Consensus       333 l~~~p~~~~~l~s~s~d--------------g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~--~dg~--i~  394 (645)
                      --+++ +++.|+.+...              ..|+..++.+.+...+....    +..|+++++.|+-..  .++.  |.
T Consensus        58 ~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEE
Confidence            34567 77777666543              35777788776654443322    236788899888776  3444  44


Q ss_pred             EEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC
Q 006424          395 FYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK  474 (645)
Q Consensus       395 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~  474 (645)
                      ..++.+..  ...+.-.        .+  ..+++++..+..+......|.+.++..........   +... ..++|++.
T Consensus       133 ~~~~dGs~--~~~lt~~--------~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~  196 (302)
T 3s25_A          133 RIRIDGEE--KKKIKNH--------YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDT  196 (302)
T ss_dssp             EEETTSCC--CEEEESS--------CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETT
T ss_pred             EEECCCCC--eEEEeCC--------Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCC
Confidence            44444332  2222211        11  34567774444454446788888876433222221   2222 34669999


Q ss_pred             EEEEEeCC--ccEEEEeCCCCC
Q 006424          475 HIISIGDD--CRVYVWNYDELC  494 (645)
Q Consensus       475 ~l~t~s~d--g~I~iwd~~~~~  494 (645)
                      +|+-...+  ..|..-+++...
T Consensus       197 ~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          197 NVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             EEEEEEGGGTTEEEEECSSSCC
T ss_pred             EEEEEEcCCCcEEEEEECCCCC
Confidence            98877644  356666676654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=89.52  E-value=15  Score=35.22  Aligned_cols=181  Identities=9%  Similarity=0.083  Sum_probs=92.9

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEE-ecCC-CcEEEEEEeeCCCCEEEEEeC----C-------CcEEEEeCCCCcEEEee
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNV-FDHH-NYVTCVQFNPIDDNYFISGSI----D-------GKVRIWGVCEKRVVDWA  366 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~-~~~~-~~v~~l~~~p~~~~~l~s~s~----d-------g~i~vwd~~~~~~~~~~  366 (645)
                      .++.|+  ..+.+||..+++-... +... .......... ++.+++.|+.    +       ..+.+||..+.+-....
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            344555  5789999988875431 1111 1122222233 6788888873    1       12788899887765543


Q ss_pred             ccCCCe--EEEEEccCCCEEEEEecC--------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          367 DVRDVI--SAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       367 ~~~~~v--~~l~~sp~g~~l~~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      ....+-  .+++. -+++.++.|+.+        ..+.+||..+....... .....    ..... ++. -++ .+++.
T Consensus        84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~----r~~~~-~~~-~~~-~iyv~  154 (315)
T 4asc_A           84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-PLPYV----VYGHT-VLS-HMD-LVYVI  154 (315)
T ss_dssp             CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-CCSSC----CBSCE-EEE-ETT-EEEEE
T ss_pred             CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-CCCCc----cccee-EEE-ECC-EEEEE
Confidence            322211  12222 256666666632        45888998876543211 11111    11111 222 233 56777


Q ss_pred             EEC-C-----CeEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCCc-----cEEEEeCCCCC
Q 006424          437 TSE-D-----SKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDELC  494 (645)
Q Consensus       437 ~s~-d-----g~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~dg-----~I~iwd~~~~~  494 (645)
                      |+. +     ..+.+||..+..-....  ......-..+.  -+++.++.|+.++     .+.+||..+..
T Consensus       155 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          155 GGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             CCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             eCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            765 2     46888997643211111  11111112222  3677888887654     58888887763

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=88.02  E-value=12  Score=41.06  Aligned_cols=191  Identities=14%  Similarity=0.134  Sum_probs=99.4

Q ss_pred             CeEEEEeCC----CcEEEEecCCCeEEEEe-c-------CCC-cEEEEEEeeCCCCEEEEEeCC------CcEEEEeCCC
Q 006424          299 NYLLSCSMD----KTVRMWQVGCNQCLNVF-D-------HHN-YVTCVQFNPIDDNYFISGSID------GKVRIWGVCE  359 (645)
Q Consensus       299 ~~l~s~s~d----g~I~iwd~~~~~~~~~~-~-------~~~-~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~  359 (645)
                      ..++.|+.+    ..+.+||..+++....- .       ... .-..+.+.. ++.+++.|+.+      ..+.+||..+
T Consensus       399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            356666643    46888998877544332 1       111 122233321 45677777654      3588999988


Q ss_pred             CcEEEeeccCC--CeEEEEEccCCCEEEEEecCC--eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          360 KRVVDWADVRD--VISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       360 ~~~~~~~~~~~--~v~~l~~sp~g~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      .+-........  .-.+++...+++.++.|+.++  .+.+||..+........  .+...........+.+..+...+++
T Consensus       478 ~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~--~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          478 REWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP--KDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC--SSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC--CCCCCCcccceeEEEEeCCCCEEEE
Confidence            76555432221  222333334788888887655  68899988776532211  0001111122233455544226777


Q ss_pred             EEEC--C-----CeEEEEECCcce-------eeEee--cCCCCCeEEEEEecCCCEEEEEeCC--------ccEEEEeCC
Q 006424          436 ITSE--D-----SKLRILDGVDVI-------HKFKG--LPKSGSQMSASFTTTGKHIISIGDD--------CRVYVWNYD  491 (645)
Q Consensus       436 ~~s~--d-----g~I~iwd~~~~~-------~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d--------g~I~iwd~~  491 (645)
                      .|+.  +     +.+.+||..+..       .....  ....... +++...++++++.||.+        ..|.+||..
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            7765  2     468889866433       11111  0111122 22333336777777743        457888877


Q ss_pred             CC
Q 006424          492 EL  493 (645)
Q Consensus       492 ~~  493 (645)
                      +.
T Consensus       635 t~  636 (695)
T 2zwa_A          635 SE  636 (695)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=87.21  E-value=25  Score=35.00  Aligned_cols=108  Identities=8%  Similarity=-0.057  Sum_probs=57.4

Q ss_pred             cCeEEEEEcC---CCeEEEEeCCCcEEEEecCCCeEEEEec--------------------CCCcEEEEEEeeCCCCEEE
Q 006424          288 GDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCNQCLNVFD--------------------HHNYVTCVQFNPIDDNYFI  344 (645)
Q Consensus       288 ~~V~~l~~s~---~~~l~s~s~dg~I~iwd~~~~~~~~~~~--------------------~~~~v~~l~~~p~~~~~l~  344 (645)
                      ..|.++++.|   .+.++.++..+.|...+-. ++.-..+.                    ....+.++.++|.+.+.++
T Consensus       115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~  193 (394)
T 3b7f_A          115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY  193 (394)
T ss_dssp             CEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred             cceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence            3577888875   3566666666655544322 22211111                    1235788999874455555


Q ss_pred             EEeCCCcEEEEeCCCCcEEEeec-c------------CCCeEEEEEccC-CCEEEEEecCCeEEEEE
Q 006424          345 SGSIDGKVRIWGVCEKRVVDWAD-V------------RDVISAICYIPD-GKGFIVGSITGTCHFYK  397 (645)
Q Consensus       345 s~s~dg~i~vwd~~~~~~~~~~~-~------------~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd  397 (645)
                      .+..++.|...+-....-..... .            ...+.++.++|. ...++++...+ |...+
T Consensus       194 vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~  259 (394)
T 3b7f_A          194 IGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD  259 (394)
T ss_dssp             EEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred             EEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence            55545555544332222222211 0            134889999985 45677776544 44433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=86.89  E-value=22  Score=34.05  Aligned_cols=173  Identities=10%  Similarity=0.068  Sum_probs=87.1

Q ss_pred             cEEEEecCCCeEEEE-ec--CCCcEEEEEEeeCCCCEEEEEeC----CC-------cEEEEeCCCCcEEEeeccCCC--e
Q 006424          309 TVRMWQVGCNQCLNV-FD--HHNYVTCVQFNPIDDNYFISGSI----DG-------KVRIWGVCEKRVVDWADVRDV--I  372 (645)
Q Consensus       309 ~I~iwd~~~~~~~~~-~~--~~~~v~~l~~~p~~~~~l~s~s~----dg-------~i~vwd~~~~~~~~~~~~~~~--v  372 (645)
                      .+..||..+++-... ..  ....-.+++ .. ++.+++.|+.    ++       .+..||..+.+-........+  -
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             ceEEECCCCCceecccCCccCCccceEEE-EE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            378899988775442 11  111222222 33 6778888873    12       177889888776554322211  1


Q ss_pred             EEEEEccCCCEEEEEecC-------CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC------
Q 006424          373 SAICYIPDGKGFIVGSIT-------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE------  439 (645)
Q Consensus       373 ~~l~~sp~g~~l~~g~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~------  439 (645)
                      .+++. -+++.++.|+.+       ..+.+||..+....... ......    ..-. ++. .++ .+++.|+.      
T Consensus       103 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r----~~~~-~~~-~~~-~iyv~GG~~~~~~~  173 (318)
T 2woz_A          103 FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKV----YGHN-VIS-HNG-MIYCLGGKTDDKKC  173 (318)
T ss_dssp             CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCE----ESCE-EEE-ETT-EEEEECCEESSSCB
T ss_pred             cceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcc----cccE-EEE-ECC-EEEEEcCCCCCCCc
Confidence            22222 256777777654       25778888766543221 111111    1111 222 344 56666654      


Q ss_pred             CCeEEEEECCcceeeEee--cCCCCCeEEEEEecCCCEEEEEeCC-----ccEEEEeCCCCC
Q 006424          440 DSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC  494 (645)
Q Consensus       440 dg~I~iwd~~~~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d-----g~I~iwd~~~~~  494 (645)
                      -..+.+||..+..-....  .........+.  -+++.++.|+.+     ..+.+||..+..
T Consensus       174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             cceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            245889997643221111  11111112222  367777777643     357788887764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.07  E-value=11  Score=38.71  Aligned_cols=112  Identities=13%  Similarity=0.099  Sum_probs=62.6

Q ss_pred             CCeEEEEEccCCC-EEEEEecCCeEEEEEecCCceeeeEEeeccccc-----cCCCCeEEEEEcCC----CCcEEEEEEC
Q 006424          370 DVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-----TSGNKITGIQFSRD----ESQRIMITSE  439 (645)
Q Consensus       370 ~~v~~l~~sp~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~i~~i~~s~~----g~~~l~~~s~  439 (645)
                      .....|+|.|+|. .|+++...|.|++++............+.....     ........|+|+|+    + .++++-+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~-~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG-KLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-EEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-EEEEEEeC
Confidence            4567899999996 577778899999997543211111111111110     11356789999996    4 34443332


Q ss_pred             --C----------CeEEEEECCc----------ceeeEee--cCCCCCeEEEEEecCCCEEEEEeCC
Q 006424          440 --D----------SKLRILDGVD----------VIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD  482 (645)
Q Consensus       440 --d----------g~I~iwd~~~----------~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~d  482 (645)
                        +          ..|.-|....          ....+..  .........|.|.|||.+.++.++.
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence              1          1333344321          1122221  1223456889999999888877654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=85.72  E-value=2.7  Score=43.81  Aligned_cols=97  Identities=14%  Similarity=0.071  Sum_probs=65.4

Q ss_pred             cEEEEeCCC-----CcEEEeeccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCCcee-------eeEEeeccccccC
Q 006424          351 KVRIWGVCE-----KRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLK-------LEKVDFHDRKKTS  417 (645)
Q Consensus       351 ~i~vwd~~~-----~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~  417 (645)
                      .|.+.|.+.     .....+.........+.++|||+++++++. +.++.++|+......       .... ... ....
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~-~~a-e~e~  376 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDV-IVG-EPEL  376 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGG-EEE-CCBC
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccc-eEe-eccC
Confidence            478888776     235556666777888999999999888764 779999998732110       0000 000 0112


Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424          418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD  450 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~  450 (645)
                      +-.....+|.++| ....+..-|..|.-|++..
T Consensus       377 GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          377 GLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             CSCEEEEEECSSS-EEEEEETTTTEEEEEEHHH
T ss_pred             CCcccEEEECCCC-ceEeeeeecceEEEEeccH
Confidence            3556788999998 6666667899999999654

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=80.82  E-value=43  Score=32.50  Aligned_cols=148  Identities=9%  Similarity=0.100  Sum_probs=88.0

Q ss_pred             CCeEEEEeCCCcEEEEecCCC-------eEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC--CCcE------
Q 006424          298 SNYLLSCSMDKTVRMWQVGCN-------QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EKRV------  362 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~-------~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~~~------  362 (645)
                      +..++.++.+|.|+--.+..-       .....+...+.+..+.... ....++..+..|.+..+...  .-..      
T Consensus       109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~  187 (327)
T 3uc1_A          109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATS  187 (327)
T ss_dssp             SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred             CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence            358999999999999876432       2222233445566555555 55677778889998888766  2111      


Q ss_pred             -EE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee----EEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          363 -VD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       363 -~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                       ..  -......|.++...+++.+++..+..|.++.-.+........    ...+.  .....+.+..+....++ ..++
T Consensus       188 Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~--l~~~~d~lv~~~~~~~~-~~i~  264 (327)
T 3uc1_A          188 GVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVM--YDRRRGRLVGALIVDDD-SELY  264 (327)
T ss_dssp             CEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSC--CCTTTCSEEEEEEECTT-CEEE
T ss_pred             CeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEE--ecCCCCeEEEEEEeCCC-ccEE
Confidence             11  122345677776666677899999999998887654332111    11111  00112345554444333 4677


Q ss_pred             EEECCCeEEEEECC
Q 006424          436 ITSEDSKLRILDGV  449 (645)
Q Consensus       436 ~~s~dg~I~iwd~~  449 (645)
                      ..+.+|.+.-++..
T Consensus       265 l~T~~G~~ir~~~~  278 (327)
T 3uc1_A          265 AVTSGGGVIRTAAR  278 (327)
T ss_dssp             EEEGGGCEEEEEGG
T ss_pred             EEcCCCeEEEEehh
Confidence            77778877777643

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=80.51  E-value=48  Score=32.89  Aligned_cols=167  Identities=5%  Similarity=0.038  Sum_probs=97.9

Q ss_pred             cEEEEecCCC--eEEEEec-------CCCcEEEEEEeeC--C----CCEEEEEe-CCCcEEEEeCCCCcEEEeec-----
Q 006424          309 TVRMWQVGCN--QCLNVFD-------HHNYVTCVQFNPI--D----DNYFISGS-IDGKVRIWGVCEKRVVDWAD-----  367 (645)
Q Consensus       309 ~I~iwd~~~~--~~~~~~~-------~~~~v~~l~~~p~--~----~~~l~s~s-~dg~i~vwd~~~~~~~~~~~-----  367 (645)
                      .|.+||+.++  +.++.+.       ..+.+..+.+...  .    +.+++.+. ..+.|.|+|+.+++..++..     
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5888999998  8888774       2346788888711  1    33444443 46779999999887655431     


Q ss_pred             --------------cCCCeEEEEEccC----CCEEEEEecCCeEEEEEec-----CCceeeeEEeeccccccCCCCeEEE
Q 006424          368 --------------VRDVISAICYIPD----GKGFIVGSITGTCHFYKAS-----GNDLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       368 --------------~~~~v~~l~~sp~----g~~l~~g~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                                    ....+..|+++|+    ++.|+-....+. ++|.+.     .... ...+...+.. .....-..+
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~-~~~v~~~G~k-g~~s~~~~~  280 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGG-KLNPELLGNR-GKYNDAIAL  280 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTC-CCCCEEEEEC-CTTCCEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcch-hhceEEeeec-CCCCCcceE
Confidence                          0235778888887    677777665542 344432     2211 1111111111 001233456


Q ss_pred             EEc-CCCCcEEEEEECCCeEEEEECCc-ce-----eeEeecCCCCCeEEEEEecCCCEEEEE
Q 006424          425 QFS-RDESQRIMITSEDSKLRILDGVD-VI-----HKFKGLPKSGSQMSASFTTTGKHIISI  479 (645)
Q Consensus       425 ~~s-~~g~~~l~~~s~dg~I~iwd~~~-~~-----~~~~~~~~~~~i~~v~~sp~~~~l~t~  479 (645)
                      ++. .+| .++++--..+.|..|+... ..     ..+.....-..+..+.+.++|.+.++.
T Consensus       281 ~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          281 AYDPKTK-VIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             EECTTTC-EEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             EEeCCCC-eEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            675 555 7777888889999999765 22     333332233456777777666655554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	645
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-25
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-24
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (256), Expect = 8e-25
 Identities = 57/311 (18%), Positives = 101/311 (32%), Gaps = 21/311 (6%)

Query: 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 253
             +  H+  +  + F P    + S  ED  +++W   +     +                
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFD 68

Query: 254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 313
                  S    + I    FQ  E                   N ++++S S DKT++MW
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 314 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVI 372
           +V    C+  F  H     +     D     S S D  VR+W V  K    +  + R V+
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 373 SAICYIPDGKGFIVGSITGTC--------HFYKASGNDLKLEKVDFHDRK-----KTSGN 419
             I + P+     +   TG+          F  +   D  ++  D              N
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248

Query: 420 KITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHII 477
            + G+ F     + I+  ++D  LR+ D  +   +             S  F  T  +++
Sbjct: 249 WVRGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNA--HEHFVTSLDFHKTAPYVV 305

Query: 478 SIGDDCRVYVW 488
           +   D  V VW
Sbjct: 306 TGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.9 bits (216), Expect = 2e-19
 Identities = 48/270 (17%), Positives = 97/270 (35%), Gaps = 21/270 (7%)

Query: 105 NECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRK 164
            +   TL+G ++   Q +    +            +K    +     +       +    
Sbjct: 49  GDFERTLKGHTDSV-QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV 107

Query: 165 PNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVV 224
                        +    K  E    Y  +    H+  +  ++ + DG  +AS   D  V
Sbjct: 108 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167

Query: 225 RIWHVTSV-----------AASCKSFTDDGGFGSNAKE--GKIKFGKKKSSHVPVVIPDE 271
           R+W V +               C S+  +  + S ++    + K   K    +     D+
Sbjct: 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227

Query: 272 VFQI----EESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD- 325
             ++        L  L GH   V  + +     ++LSC+ DKT+R+W     +C+   + 
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287

Query: 326 HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355
           H ++VT + F+     Y ++GS+D  V++W
Sbjct: 288 HEHFVTSLDFHK-TAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (166), Expect = 4e-13
 Identities = 40/270 (14%), Positives = 81/270 (30%), Gaps = 56/270 (20%)

Query: 279 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFN 336
               L GH+  V  + +    + ++S S D T+++W             H + V  + F+
Sbjct: 9   EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68

Query: 337 PI-----------------------------------------DDNYFISGSIDGKVRIW 355
                                                      + ++ +S S D  +++W
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 356 GVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-------- 406
            V     V  +   R+ +  +    DG      S   T   +  +  + K E        
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 407 -KVDFHDRKK---TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSG 462
             + +         S    +  + S      ++  S D  +++ D    +     +    
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248

Query: 463 SQMSASFTTTGKHIISIGDDCRVYVWNYDE 492
                 F + GK I+S  DD  + VW+Y  
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKN 278

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (251), Expect = 6e-24
 Identities = 57/304 (18%), Positives = 103/304 (33%), Gaps = 12/304 (3%)

Query: 190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA 249
           + T + ++ H   I+ + +  D R L S  +DG + IW   +               + A
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 250 KEGKIKFGKKKSSHVPVVIPD-EVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDK 308
                 +           I + +  +      +EL GH G +    + + N +++ S D 
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 309 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWAD 367
           T  +W +   Q    F  H           D   F+SG+ D   ++W V E      +  
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224

Query: 368 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 427
               I+AIC+ P+G  F  GS   TC  +    +                   IT + FS
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQ-----ELMTYSHDNIICGITSVSFS 279

Query: 428 RDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRV 485
           +   + ++   +D    + D +         G            T  G  + +   D  +
Sbjct: 280 KS-GRLLLAGYDDFNCNVWDALKADRAGVLAG--HDNRVSCLGVTDDGMAVATGSWDSFL 336

Query: 486 YVWN 489
            +WN
Sbjct: 337 KIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 17/134 (12%), Positives = 32/134 (23%), Gaps = 46/134 (34%)

Query: 181 KKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT 240
           +   +       +         I ++ FS  GR L +G +D    +W             
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK--------- 301

Query: 241 DDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSN 299
                                                     L GH   V  L  + +  
Sbjct: 302 ------------------------------------ADRAGVLAGHDNRVSCLGVTDDGM 325

Query: 300 YLLSCSMDKTVRMW 313
            + + S D  +++W
Sbjct: 326 AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.5 bits (132), Expect = 8e-09
 Identities = 37/265 (13%), Positives = 72/265 (27%), Gaps = 43/265 (16%)

Query: 270 DEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN 328
           D V +I+    + L GH   +  + W  +S  L+S S D  + +W       ++     +
Sbjct: 38  DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS 97

Query: 329 -YVTCVQFNPIDDNYFISGSID--------------GKVRIWGVCEKRVVDWADVRDVIS 373
            +V    + P  +     G  +                 R        +     + D   
Sbjct: 98  SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157

Query: 374 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK------------- 420
                                 +     D+    +    R   SG               
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217

Query: 421 -----------ITGIQFSRDESQRIMITSEDSKLRI--LDGVDVIHKFKGLPKSGSQMSA 467
                      I  I F  +        S+D+  R+  L     +  +          S 
Sbjct: 218 CRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276

Query: 468 SFTTTGKHIISIGDDCRVYVWNYDE 492
           SF+ +G+ +++  DD    VW+  +
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALK 301

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.1 bits (232), Expect = 3e-21
 Identities = 56/331 (16%), Positives = 120/331 (36%), Gaps = 39/331 (11%)

Query: 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 258
           H   +  +KFS DG YLA+G  +   +++ V+  +      +DD     + +        
Sbjct: 61  HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL-VARLSDDSAANKDPENLNTSSSP 118

Query: 259 KKSSHVPVV-----------------IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYL 301
               ++  V                 I     +  +  +      +       + + + L
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 302 LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 361
           +S S D+TVR+W +   QC       + VT V  +P D  Y  +GS+D  VR+W      
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 362 VVDWADV--------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 413
           +V+  D         +D + ++ +  DG+  + GS+  +   +     + K +    +  
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 414 K-----KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQM- 465
                     + +  +  +++  + I+  S+D  +   D      +   +G   S   + 
Sbjct: 299 TCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 357

Query: 466 ---SASFTTTGKHIISIGDDCRVYVWNYDEL 493
               +S         +   DC+  +W Y ++
Sbjct: 358 VANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.8 bits (187), Expect = 1e-15
 Identities = 39/170 (22%), Positives = 61/170 (35%), Gaps = 40/170 (23%)

Query: 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG 252
           ++    HK  ++++ F+ DG+ + SG  D  V++W++ +                     
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN--------------------- 285

Query: 253 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVR 311
                            D       +      GHK  VL +A + N  Y+LS S D+ V 
Sbjct: 286 ------------ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333

Query: 312 MWQVGCNQCLNVFD-HHNYVTCVQFNPI-----DDNYFISGSIDGKVRIW 355
            W       L +   H N V  V          + N F +GS D K RIW
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.7 bits (179), Expect = 1e-14
 Identities = 53/269 (19%), Positives = 91/269 (33%), Gaps = 26/269 (9%)

Query: 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 257
           +    I ++ FSPDG++LA+G ED ++RIW + +          +    S          
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 258 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC 317
              S    V I D         L    G       ++  +  Y+ + S+D+ VR+W    
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV--AVSPGDGKYIAAGSLDRAVRVWDSET 236

Query: 318 NQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV------------ 357
              +   D        H + V  V F   D    +SGS+D  V++W +            
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 358 -CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 416
                 V +   +D + ++    + +  + GS      F+     +  L  +  H     
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVI 354

Query: 417 SGNKITGIQFSRDESQRIMITSEDSKLRI 445
           S     G     +        S D K RI
Sbjct: 355 SVAVANGSSLGPE-YNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 2e-10
 Identities = 39/286 (13%), Positives = 83/286 (29%), Gaps = 76/286 (26%)

Query: 280 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-------------- 325
           L +   H   V  + +SN    L+   +KT ++++V     +                  
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114

Query: 326 -----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYI-- 378
                   Y+  V F+P D  +  +G+ D  +RIW +  +++V      +          
Sbjct: 115 SSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173

Query: 379 -----------------------------------------PDGKGFIVGSITGTCHFYK 397
                                                     DGK    GS+      + 
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233

Query: 398 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD---------- 447
           +    L       ++      + +  + F+RD  Q ++  S D  +++ +          
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDS 292

Query: 448 --GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 491
                   +   +      +S + T   ++I+S   D  V  W+  
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 1e-09
 Identities = 25/152 (16%), Positives = 43/152 (28%), Gaps = 52/152 (34%)

Query: 171 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 230
           K   ++   NK       +         HK  + ++  + +  Y+ SG +D  V  W   
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 231 SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDV 290
           S                                              +PL  L GH+  V
Sbjct: 339 S---------------------------------------------GNPLLMLQGHRNSV 353

Query: 291 LDLAWSNS-------NYLLSCSMDKTVRMWQV 315
           + +A +N        N   + S D   R+W+ 
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 63/379 (16%), Positives = 118/379 (31%), Gaps = 51/379 (13%)

Query: 290 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFI 344
           +LDL   +    L    +    ++     + ++V      DH + V CV+F+  D  Y  
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLA 78

Query: 345 SGSIDGKVRIWGVCEKRVV-----DWADVRDV--------------ISAICYIPDGKGFI 385
           +G  +   +++ V +  +V     D A  +D               I ++C+ PDGK   
Sbjct: 79  TGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 386 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 445
            G+       +          +            +            +++  S D  +RI
Sbjct: 138 TGAEDRLIRIWD--------IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189

Query: 446 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 505
            D            + G    A     GK+I +   D  V VW+ +      +       
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE------TGFLVERL 243

Query: 506 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFS 565
             E+    G   +V       + +S+ S S  D S K  NL+ A    DS+  + G+   
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEV 302

Query: 566 NDGPCRG---SATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGL 622
                +    S         +   + D      D +          + + V +++   G 
Sbjct: 303 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 362

Query: 623 -------VIVTAGCDGMIK 634
                  V  T   D   +
Sbjct: 363 SLGPEYNVFATGSGDCKAR 381

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 1e-16
 Identities = 41/344 (11%), Positives = 99/344 (28%), Gaps = 54/344 (15%)

Query: 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW-------------HVTSVAASCKS 238
           + + ++ H   + T      G  + SG +D  +++W             H   V +S   
Sbjct: 8   SPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66

Query: 239 FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS 298
                   ++           +  H        V  +     + + G +   L +    +
Sbjct: 67  DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 126

Query: 299 ---------------------NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP 337
                                  ++S + D  V++W      CL+    H          
Sbjct: 127 GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQ 184

Query: 338 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 397
            D  + +SGS+D  +R+W V     +        +++          + G+   T   + 
Sbjct: 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKDNILVSGNADSTVKIW- 242

Query: 398 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKF 455
                  ++        +      + +   +     ++ +S+D  +++ D    + I   
Sbjct: 243 ------DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 296

Query: 456 KGLPKSGSQ---MSASFTTTGKHIISIGDD----CRVYVWNYDE 492
             L   GS         + T         +     ++ V ++D 
Sbjct: 297 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 2e-11
 Identities = 28/248 (11%), Positives = 73/248 (29%), Gaps = 21/248 (8%)

Query: 279 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNP 337
             + L GH   V+       N ++S S D T+++W     +CL     H   V   Q   
Sbjct: 8   SPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

Query: 338 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 397
             +      +            + +         +  +                      
Sbjct: 68  --NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK------------RVVSG 113

Query: 398 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD--GVDVIHKF 455
           +    L++  ++           +  ++  + + +R++  + D  +++ D      +H  
Sbjct: 114 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 173

Query: 456 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV 515
           +G       +       G H++S   D  + VW+ +      +   +   +      + +
Sbjct: 174 QGHTNRVYSLQFD----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI 229

Query: 516 SVAVQWPG 523
            V+     
Sbjct: 230 LVSGNADS 237

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 4/41 (9%)

Query: 191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDG----VVRIW 227
             + E     G +W ++ S      A G  +G     + + 
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 72.6 bits (176), Expect = 3e-14
 Identities = 26/314 (8%), Positives = 72/314 (22%), Gaps = 27/314 (8%)

Query: 198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 257
                I  ++   D +     G      +          + F      G+    G  + G
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNG 97

Query: 258 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYL-----------LSCSM 306
           K             V      P       +  + D   S+++                 +
Sbjct: 98  KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV 157

Query: 307 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV--------C 358
            + + ++ +   +       +++     F+          S                   
Sbjct: 158 MQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEV 216

Query: 359 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 418
             +      +    +    +P       G       + ++S  ++           ++S 
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276

Query: 419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS 478
              +        +       E   L   D      K   +    +      +   K ++ 
Sbjct: 277 LIYSVPVHGEF-AAYYQGAPEKGVLLKYDVKT--RKVTEV--KNNLTDLRLSADRKTVMV 331

Query: 479 IGDDCRVYVWNYDE 492
             DD ++Y +  ++
Sbjct: 332 RKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 6/39 (15%), Positives = 18/39 (46%)

Query: 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 231
           ++++   K  +  L+ S D + +    +DG +  + +  
Sbjct: 307 TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (175), Expect = 3e-14
 Identities = 46/296 (15%), Positives = 89/296 (30%), Gaps = 16/296 (5%)

Query: 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT-----SVAASCKSFTDDGGFGSNAKEGK 253
           H   +  +  S   R++ +GG  G V++W ++     S  +       D    S      
Sbjct: 50  HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 313
                       + I D          +               +S    SC  D  + +W
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168

Query: 314 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 373
            +     +  F  H           D     +G +D  VR W + E R +   D    I 
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF 228

Query: 374 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433
           ++ Y P G+   VG  +                      +     + +  ++F+    + 
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHV--------NKPDKYQLHLHESCVLSLKFAYC-GKW 279

Query: 434 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489
            + T +D+ L                +S S +S   +   K+I++   D +  V+ 
Sbjct: 280 FVSTGKDNLLNAWR-TPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 6e-13
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 284 HGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 342
           H H+  VL L ++    + +S   D  +  W+      +      + V     +  DD Y
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-DDKY 320

Query: 343 FISGSIDGKVRIWGV 357
            ++GS D K  ++ V
Sbjct: 321 IVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 4e-12
 Identities = 38/256 (14%), Positives = 74/256 (28%), Gaps = 10/256 (3%)

Query: 192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE 251
           +  +       I + K  PDG  L  GGE   + IW + +     K+          A  
Sbjct: 89  SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148

Query: 252 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR 311
                    S      I       +    Q      G       ++   L +  +D TVR
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208

Query: 312 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 371
            W +   + L   D  + +  + + P    +   G     V +  V +            
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC 267

Query: 372 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 431
           + ++ +   GK F+        + ++                +    + +     S D  
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--------FQSKESSSVLSCDISVD-D 318

Query: 432 QRIMITSEDSKLRILD 447
           + I+  S D K  + +
Sbjct: 319 KYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 47/133 (35%)

Query: 184 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG 243
            +         ++  H+ C+ +LKF+  G++  S G+D ++  W                
Sbjct: 249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------------ 296

Query: 244 GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLL 302
                                             + + +       VL    S +  Y++
Sbjct: 297 ---------------------------------GASIFQS-KESSSVLSCDISVDDKYIV 322

Query: 303 SCSMDKTVRMWQV 315
           + S DK   +++V
Sbjct: 323 TGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 5e-08
 Identities = 43/290 (14%), Positives = 72/290 (24%), Gaps = 47/290 (16%)

Query: 264 VPVVIPDEVFQIEESP--LQELH--GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ 319
            PV  P +       P   ++++   H   V  +  SN    +       V++W +    
Sbjct: 24  QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG 83

Query: 320 C------LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV------DWAD 367
                  L+  +  NY+   +  P D    I G     + IW +              A 
Sbjct: 84  NKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142

Query: 368 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 427
               ++                      +  +         D       S +        
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202

Query: 428 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPK--------------------------- 460
            D + R     E  +L+  D    I      P                            
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262

Query: 461 --SGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL-CFPSSKQKNSVRSC 507
                 +S  F   GK  +S G D  +  W          SK+ +SV SC
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC 312

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 69.6 bits (168), Expect = 1e-13
 Identities = 39/298 (13%), Positives = 79/298 (26%), Gaps = 9/298 (3%)

Query: 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 253
           Q    H   I  L  S DG+ L S   +G +  W +++  ++           +  K   
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65

Query: 254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 313
                  S    + +        +S     +      L LA S    +   +  K + ++
Sbjct: 66  KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125

Query: 314 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 373
             G              +CV  +       + G                     V     
Sbjct: 126 SHGKLTE---VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 374 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 433
                 +   F+V +         +  N+        H    T             ++ R
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANN----FELAHTNSWTFHTAKVACVSWSPDNVR 238

Query: 434 IMITSEDSKLRI--LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 489
           +   S D+ + +  ++             + S +++        I+S G D  +  WN
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.1 bits (125), Expect = 4e-08
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 280 LQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFN 336
            Q  +GH   +  L+ S +   L S   +  +  W +       VF   H   +T ++  
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 337 PIDDNYFISGSIDGKVRIWGVCEKRVVDW 365
              D + +S      +++       V   
Sbjct: 65  SKGDLFTVSWDDH--LKVVPAGGSGVDSS 91

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 3e-05
 Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 295 WSNSNYLLSCSMDKTVRMWQV---GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 351
             ++  L + S+D +V +W +     +  +    H            ++   +S   D  
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSN 291

Query: 352 VRIWGV 357
           ++ W V
Sbjct: 292 IKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 6e-04
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 230
            AH           +   + S G+D  ++ W+V 
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 42/314 (13%), Positives = 78/314 (24%), Gaps = 36/314 (11%)

Query: 326 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 385
           H+  +T +  +  D     S   +G +  W           D+   IS   +       I
Sbjct: 11  HNKAITALSSSA-DGKTLFSADAEGHINSW-----------DISTGISNRVFPDVHATMI 58

Query: 386 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 445
            G  T +         D  L+ V        S   +     S+     +    + +    
Sbjct: 59  TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

Query: 446 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 505
              + +    K      S  S+    +              V  Y       S+ K  V 
Sbjct: 119 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 178

Query: 506 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWF- 564
             E       +           +K +  S   +      N  T    + +          
Sbjct: 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238

Query: 565 ----SNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATW 620
               S D               +W++          P    +  +  + +  V ++    
Sbjct: 239 LATGSLDNSVI-----------VWNM--------NKPSDHPIIIKGAHAMSSVNSVIWLN 279

Query: 621 GLVIVTAGCDGMIK 634
              IV+AG D  IK
Sbjct: 280 ETTIVSAGQDSNIK 293

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 280 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQV 315
           + +       V  + W N   ++S   D  ++ W V
Sbjct: 262 IIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.9 bits (169), Expect = 2e-13
 Identities = 29/315 (9%), Positives = 67/315 (21%), Gaps = 24/315 (7%)

Query: 197 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS------NAK 250
           QA K  I  +K  P    L     DG + ++     A +                     
Sbjct: 8   QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 251 EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTV 310
                +       +  V        +     E +     +               + + +
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127

Query: 311 RMWQVGCNQCLNVFDH---HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV---- 363
                G         +         +     + +  I G  + +V+ + +          
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187

Query: 364 -DWADVRDVISAICYIPDGKGFIVGSITGTCHFY--------KASGNDLKLEKVDFHDRK 414
            +      +        + +G+   SI G               S           + + 
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247

Query: 415 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK 474
                 +  I+FS    + +     D  +   + +    K K   K           +  
Sbjct: 248 TNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWN-LQTRKKIKNFAKFNEDSVVKIACSDN 305

Query: 475 HIISIGDDCRVYVWN 489
            +     D       
Sbjct: 306 ILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.5 bits (155), Expect = 9e-12
 Identities = 32/254 (12%), Positives = 74/254 (29%), Gaps = 9/254 (3%)

Query: 280 LQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQV----GCNQCLNVFDHHNYVTCVQ 334
           +Q     K  + D+    + + LL  S D ++ +++          L    + + + C  
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 335 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCH 394
           F    D     G++ G++    +            +    IC I       + + +    
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 395 FYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD----GVD 450
                  +     +   +    +      I      S R+++   +S+++         D
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 451 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF 510
                +   K   +  A      +       D RV V  +D+     +  K     C   
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 511 FSEGVSVAVQWPGI 524
             +  ++A     I
Sbjct: 244 NLKDTNLAYPVNSI 257

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 14/125 (11%), Positives = 36/125 (28%), Gaps = 5/125 (4%)

Query: 283 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 342
                G V    + +     + S     R  ++         +    V  ++F+P    +
Sbjct: 211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT----NLAYPVNSIEFSP-RHKF 265

Query: 343 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 402
             +   DG +  W +  ++ +      +  S +          + +   T     A    
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT 325

Query: 403 LKLEK 407
           ++L  
Sbjct: 326 IELNA 330

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.1 bits (167), Expect = 3e-13
 Identities = 40/308 (12%), Positives = 87/308 (28%), Gaps = 62/308 (20%)

Query: 203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 262
           I    ++ D   +A    +  V I+  +                                
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-------------------------- 43

Query: 263 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCL 321
                            + EL  H G V  + W+ +SN +++C  D+   +W +      
Sbjct: 44  -----------------VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86

Query: 322 NVFDHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGVCEKR-----VVDWADVRDVISA 374
                       +      ++  F  GS    + I    ++            +R  + +
Sbjct: 87  PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 146

Query: 375 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES--- 431
           + + P+      GS    C  + A   +++          K    ++     S       
Sbjct: 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG 206

Query: 432 -------QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR 484
                   R+   S DS + + D    +       ++   ++ +F T    + + G DC 
Sbjct: 207 VCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA-GHDCF 265

Query: 485 VYVWNYDE 492
             ++ YD 
Sbjct: 266 PVLFTYDS 273

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.5 bits (142), Expect = 4e-10
 Identities = 44/323 (13%), Positives = 88/323 (27%), Gaps = 29/323 (8%)

Query: 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 253
            E++ H G +  + ++PD   + + G D    +W +                 +      
Sbjct: 45  HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104

Query: 254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDL----AWSNSNYLLSCSMDKT 309
               K        VI    F+ E       H  K     +       NS  L + S D  
Sbjct: 105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164

Query: 310 VRMWQVGCNQCLNVFDHHNYVTCVQF------------------NPIDDNYFISGSIDGK 351
            R++     +         + + + F                     + +     S D  
Sbjct: 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 224

Query: 352 VRIWGV-CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF 410
           V +     +  V   A     + A+ +I +      G       F   S           
Sbjct: 225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRL 284

Query: 411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFT 470
              K++S   +T  +  ++  ++       +    LD    +HK      S   + +   
Sbjct: 285 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS---LHK---NSVSQISVLSGGK 338

Query: 471 TTGKHIISIGDDCRVYVWNYDEL 493
                  + G D  + +W+   L
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVRSL 361

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 197 QAHKGCIWTLKFSPDGRY----LASGGEDGVVRIWHVTSVAASCKSF 239
             HK  +  +     G+       + G DG + IW V S+ ++ K  
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 34/270 (12%), Positives = 70/270 (25%), Gaps = 9/270 (3%)

Query: 370 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 429
           + IS   +  D     +       H Y+ SGN             K    ++TG+ ++ D
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE-----LKEHNGQVTGVDWAPD 62

Query: 430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR--VYV 487
            S RI+    D    +        K   +    ++ +                    + +
Sbjct: 63  -SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121

Query: 488 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE 547
             +++       +           S            G+        S      +     
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 181

Query: 548 TAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCL 607
           T    +      +    S+ G       + A    +  V+ DS     D  ++       
Sbjct: 182 TPWGSKMPFGELMFESSSSCGWVH-GVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240

Query: 608 NNVDDVRAISATWGLVIVTAGCDGMIKTFH 637
           +    + A++      +V AG D     F 
Sbjct: 241 SETLPLLAVTFITESSLVAAGHDCFPVLFT 270

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 10/130 (7%)

Query: 191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAK 250
                + +    +  + F  +   +A+G  D    ++   S A              +++
Sbjct: 234 MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 292

Query: 251 EGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-----NSNYLLSCS 305
            G     + ++                +       HK  V  ++         +   +  
Sbjct: 293 RGLTARERFQNLDKKASSEGSA----AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG 348

Query: 306 MDKTVRMWQV 315
           MD  + +W V
Sbjct: 349 MDGGMSIWDV 358

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.1 bits (154), Expect = 2e-11
 Identities = 42/363 (11%), Positives = 91/363 (25%), Gaps = 78/363 (21%)

Query: 190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW---------------------- 227
           + T+   +AH   I+++       +  S   DG +++W                      
Sbjct: 4   IATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 228 ---HVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 284
              HV  + A  +   +     + +  G + F +         +       E+  L +  
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF-----EKLDLLDSD 116

Query: 285 GHKGDVLDLAWSNS------NYLLSCSMDKTVRMWQV-------------------GCNQ 319
             K     L W  S      + L++  +  T  +W+                        
Sbjct: 117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176

Query: 320 CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI-------WGVCEKRVVDWADVRDVI 372
             +      + T V  +        +G  +G V+I            +      +  + I
Sbjct: 177 VESPMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234

Query: 373 SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR---- 428
            ++ + P G    +   + +         +             +S   +     S     
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294

Query: 429 ----DESQRIMITSEDSKLRILDGVD--VIHKFKG--LPKSGSQMSASFTTTGKHIISIG 480
               D  + +     D KLR  D      I             +   +    G  +   G
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

Query: 481 DDC 483
              
Sbjct: 355 VFD 357

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 3e-11
 Identities = 37/298 (12%), Positives = 86/298 (28%), Gaps = 48/298 (16%)

Query: 191 YTSQEIQAHKGCIWTLK-FSPDGRYLASGGEDGVVRIWHVTS------------------ 231
           ++ Q I         +     D + + SG  D  ++IW   +                  
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 232 --------------------VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 271
                                     +                      S    + + D 
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 272 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT 331
               + +  + L GH+  V  + + +  Y++S S D+T+++W     + +   + H    
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-- 179

Query: 332 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG 391
            +      D   +SGS D  +R+W +     +   +  + +       + +  + G+  G
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-IVSGAYDG 238

Query: 392 TCHFYKASGNDLKLEKVDFHDRKKTSG--NKITGIQFSRDESQRIMITSEDSKLRILD 447
               +                 +       ++  +QF      +I+ +S D  + I D
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSHDDTILIWD 293

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.7 bits (145), Expect = 2e-10
 Identities = 29/201 (14%), Positives = 63/201 (31%), Gaps = 48/201 (23%)

Query: 196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK 255
           ++ H   + T     +  Y+ +G +D ++R++   +                        
Sbjct: 8   LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSIN------------------------ 42

Query: 256 FGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCS--MDKTVRMW 313
                                +  L +L GH G V  L +++   L+S S      V   
Sbjct: 43  ---------------------KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 81

Query: 314 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 373
           + GC   +    +            +  Y ++GS D  + +W + ++  V          
Sbjct: 82  KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 141

Query: 374 AICYIPDGKGFIVGSITGTCH 394
            + + P+   + VG + G   
Sbjct: 142 LVFHTPEENPYFVGVLRGHMA 162

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 2e-09
 Identities = 43/356 (12%), Positives = 103/356 (28%), Gaps = 19/356 (5%)

Query: 283 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDN 341
           L GH   V+       NY+++ + DK +R++     + L     H   V  +++      
Sbjct: 8   LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GG 65

Query: 342 YFISGS---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 398
             +SGS         I   C   V +  +       I    + K  + GS   T H +K 
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 399 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL 458
                  +  + HD             F       +      S    +  V   +    +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV-VSGSYDNTLI 184

Query: 459 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVA 518
               +QM   +  +G                       ++ +   + + E  ++     A
Sbjct: 185 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244

Query: 519 VQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPA 578
           +      +++  + +++         N  +  +       S  + F        S +   
Sbjct: 245 LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--E 302

Query: 579 EKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIK 634
            +  ++++             + +    L + D + +++     ++     DG   
Sbjct: 303 NQFNIYNLR----------SGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSF 348

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 7e-07
 Identities = 7/74 (9%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 284 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDN 341
           + H        +  S+ +L    +    ++ +   + ++       + +  V F      
Sbjct: 279 YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KT 336

Query: 342 YFISGSIDGKVRIW 355
              +   DG+  + 
Sbjct: 337 LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 39/322 (12%), Positives = 90/322 (27%), Gaps = 39/322 (12%)

Query: 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN----- 248
            ++  H G +W LK++  G  ++   +  V                 +      +     
Sbjct: 47  LQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 106

Query: 249 --------AKEGKIKF--------GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD 292
                   +++  +                     +     +     +  L GH   V  
Sbjct: 107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-R 165

Query: 293 LAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 352
               + N ++S S D T+ +W V   +CL +   H           +    IS S+D  +
Sbjct: 166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 225

Query: 353 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 412
           RIW +    ++        +  +  + D       +      +                 
Sbjct: 226 RIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDA---------NDYSRK 276

Query: 413 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD---GVDVIHKFKGLPKSGSQMSASF 469
                 N      F   +   I+++  +++  I +   G  V         +    S +F
Sbjct: 277 FSYHHTNLSAITTFYVSD--NILVSGSENQFNIYNLRSGKLVHANILK--DADQIWSVNF 332

Query: 470 TTTGKHIISIGDDCRVYVWNYD 491
                 + ++  D + ++   D
Sbjct: 333 KGKTL-VAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 9/171 (5%), Positives = 28/171 (16%), Gaps = 45/171 (26%)

Query: 143 LWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGC 202
           +    +   +                      +    +          Y+ +    H   
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNL 284

Query: 203 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 262
                F      L SG  +    I+++ S                               
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRS------------------------------- 312

Query: 263 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 313
                         +     +      +  + +     + +   D    + 
Sbjct: 313 -------------GKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 350

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 2e-09
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 295 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK 351
           W +S    +   D T+R+W V  ++C+  +           V      +   IS S+DG 
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319

Query: 352 VRIW 355
           +  +
Sbjct: 320 LNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.5 bits (134), Expect = 3e-09
 Identities = 42/316 (13%), Positives = 79/316 (25%), Gaps = 32/316 (10%)

Query: 199 HKGCIWTLKFSPDGRYLASG-GEDGVVRIW---------------HVTSVAASCK-SFTD 241
            +     L + P    +A   G+   VR                 H +SV  + K S   
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 242 DGGF-GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY 300
              +  S  + GK+                    +E +   E     G + D++W     
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKES-------NSVEVNVKSEFQVLAGPISDISWDFEGR 128

Query: 301 L---LSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 356
               +    D             L     H   +             ++   DG V  + 
Sbjct: 129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ 188

Query: 357 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 416
               +            +     +        +       K S  D K  +   +     
Sbjct: 189 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 248

Query: 417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTG- 473
              +      S  +SQ+      D+ +R+ D      + K+    +           TG 
Sbjct: 249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 308

Query: 474 KHIISIGDDCRVYVWN 489
             IIS+  D  +  + 
Sbjct: 309 GRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 3e-06
 Identities = 34/231 (14%), Positives = 68/231 (29%), Gaps = 14/231 (6%)

Query: 180 NKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF 239
              K      +    E Q   G I  + +  +GR L   GE        ++  + +    
Sbjct: 95  TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE 154

Query: 240 TDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF---QIEESPLQELHGHKGDVLDLAWS 296
                   NA   K     +  +                  +  +  H     V D+ +S
Sbjct: 155 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS 214

Query: 297 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN-----PIDDNYFISGSIDGK 351
             +     ++    ++          +    +    VQ        +D   F +   D  
Sbjct: 215 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT 274

Query: 352 VRIWGVCEKRVV-----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 397
           +R+W V   + V     D   + +    +    +G+  I  S+ GT +FY+
Sbjct: 275 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 49/136 (36%)

Query: 184 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG 243
                 L   ++ Q             D +  A+ G D  +R+W VT+            
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT------------ 282

Query: 244 GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDV----LDLAWSNSN 299
                                               +Q+    K  +    + +  + + 
Sbjct: 283 ---------------------------------SKCVQKWTLDKQQLGNQQVGVVATGNG 309

Query: 300 YLLSCSMDKTVRMWQV 315
            ++S S+D T+  +++
Sbjct: 310 RIISLSLDGTLNFYEL 325

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 28/311 (9%), Positives = 69/311 (22%), Gaps = 48/311 (15%)

Query: 201 GCIWTLKFSPDGRYLA----------SGGEDGVVRIWHVTS--VAASCKSFTDDGGFGSN 248
           G +     + DG ++A           G     V ++   +    A  +           
Sbjct: 47  GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT 106

Query: 249 AKEG-----------KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS- 296
                            +F    +  V  +      ++ + P                  
Sbjct: 107 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR 166

Query: 297 -NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355
             S   ++   + T  +                 +    ++       +  +  GK+   
Sbjct: 167 DGSLAKVAFGTEGTPEITHTEVFHPE----DEFLINHPAYSQ-KAGRLVWPTYTGKIHQI 221

Query: 356 GVCEKRVVDW-------------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 402
            +                              + Y        +         +K +   
Sbjct: 222 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 281

Query: 403 LKLEKVDFHDRKKT--SGNKITGIQFSRDESQRIMIT-SEDSKLRILDGVD--VIHKFKG 457
           + +      +R      G++I  I  S+DE   +    + D  L I D      +     
Sbjct: 282 VVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 341

Query: 458 LPKSGSQMSAS 468
           L      ++ +
Sbjct: 342 LGHGPQVITTA 352

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.9 bits (122), Expect = 7e-08
 Identities = 42/302 (13%), Positives = 79/302 (26%), Gaps = 29/302 (9%)

Query: 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 253
           + I  H   I  L  +P    L SG  DG +  W  +S+     +               
Sbjct: 7   KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-------- 54

Query: 254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 313
                   S              +      H         + +N  +    + D  + + 
Sbjct: 55  --------SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLIL 106

Query: 314 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 373
           Q      +     ++  + V  +       +      +V      E        +R   S
Sbjct: 107 QSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS 166

Query: 374 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI---TGIQFSRDE 430
            I   P       G + G    Y     ++K  +  F   K  + +      G      E
Sbjct: 167 YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 226

Query: 431 SQRIMITSEDSKLRILD---GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV 487
              +   S D+ + I      + +I             +  + T    ++S G D  +  
Sbjct: 227 EDLVATGSLDTNIFIYSVKRPMKIIKALNA--HKDGVNNLLWETPST-LVSSGADACIKR 283

Query: 488 WN 489
           WN
Sbjct: 284 WN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.2 bits (115), Expect = 6e-07
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 276 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF 335
            +  L+ + GH   +  L  +    L+S S D  +  W           DH N +  +  
Sbjct: 2   HDEVLKTISGHNKGITALTVN---PLISGSYDGRIMEWSSSSMHQ----DHSNLIVSLDN 54

Query: 336 NP 337
           + 
Sbjct: 55  SK 56

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 2e-06
 Identities = 25/253 (9%), Positives = 60/253 (23%), Gaps = 44/253 (17%)

Query: 63  WFQFRGFKSSSMNRADENLNCFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSV 122
            F  +   +S+ N     +   D ++    +   D ++  ++N     +    N  +  +
Sbjct: 78  EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL 137

Query: 123 DKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKK 182
           ++                             ++    +     +            +  K
Sbjct: 138 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK 197

Query: 183 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD 242
                        I          +   +   +A+G  D  + I+ V             
Sbjct: 198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR----------- 246

Query: 243 GGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL 302
                                                ++ L+ HK  V +L W   + L+
Sbjct: 247 ---------------------------------PMKIIKALNAHKDGVNNLLWETPSTLV 273

Query: 303 SCSMDKTVRMWQV 315
           S   D  ++ W V
Sbjct: 274 SSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 3e-06
 Identities = 9/76 (11%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 284 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVFD-HHNYVTCVQFNPIDDN 341
                   +      + + + S+D  + ++ V    + +   + H + V  + +     +
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PS 270

Query: 342 YFISGSIDGKVRIWGV 357
             +S   D  ++ W V
Sbjct: 271 TLVSSGADACIKRWNV 286

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.1 bits (120), Expect = 2e-07
 Identities = 40/266 (15%), Positives = 76/266 (28%), Gaps = 18/266 (6%)

Query: 193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT----SVAASCKSFTDDGGFGSN 248
           ++    H       K SP G Y ASG   G VRIW  T     +  +   F+      S 
Sbjct: 51  TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110

Query: 249 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDK 308
             E K      +       +           L         V          +     + 
Sbjct: 111 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 170

Query: 309 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV-------RIWGVCEKR 361
                           +H  +V  V++NP    +  +G     V          GV E  
Sbjct: 171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 230

Query: 362 VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 421
            +        +  + + PDG      S   T   +  +   +  + +    R +   ++ 
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTRIE---DQQ 286

Query: 422 TGIQFSRDESQRIMITSEDSKLRILD 447
            GI +++     ++  S +  +  ++
Sbjct: 287 LGIIWTKQ---ALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 43/129 (33%)

Query: 185 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG 244
                   S +  AH G ++ L +SPDG  +AS   D  ++IW+V +             
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT------------- 269

Query: 245 FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 304
                        K + +                 +      +   L + W+    L+S 
Sbjct: 270 ------------LKVEKT-----------------IPVGTRIEDQQLGIIWTK-QALVSI 299

Query: 305 SMDKTVRMW 313
           S +  +   
Sbjct: 300 SANGFINFV 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.2 bits (118), Expect = 4e-07
 Identities = 30/312 (9%), Positives = 71/312 (22%), Gaps = 45/312 (14%)

Query: 195 EIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 253
            I            +P GR   A+  +   +    + +                      
Sbjct: 28  TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT---------------------- 65

Query: 254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 313
            +   +     P      +F    SP  +                           V ++
Sbjct: 66  GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES-----PVRLELTHFEVQPTRVALY 120

Query: 314 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 373
                     F+    +T + +   D +       D  V         +V+   ++   +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGRDLHVMDP--EAGTLVEDKPIQSWEA 177

Query: 374 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT------SGNKITGIQFS 427
                PD         +              ++  D    +           ++   +  
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237

Query: 428 RDESQRIMITSEDSKLRILDGVDVIHKF--------KGLPKSGSQMSASFTTTGKHIISI 479
             +          +K R     +V+  F        K +P   S  S + +T G  +   
Sbjct: 238 IMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG 297

Query: 480 GDDCRVYVWNYD 491
           G    +  ++ +
Sbjct: 298 GALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 231
                +++  S DG  +  GG  G +  +   +
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 16/211 (7%), Positives = 50/211 (23%), Gaps = 17/211 (8%)

Query: 299 NYLLSCSMDKTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 355
           +Y+L+ +    + +           + + D           P     + + +    +   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 356 GVCEKRVVDWADV------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 409
            +     +   D+         +      PDGK   +                 ++   D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 410 FHDRK----KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM 465
                      +  +IT + ++RD   ++     D  +   +   ++             
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDG-SKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 466 SASFTTTGKHIISIGDDCRVYVWNYDELCFP 496
                     + +  +   V    +      
Sbjct: 181 ---AQPDVLAVWNQHESSGVMATPFYTARKD 208

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 27/252 (10%), Positives = 57/252 (22%), Gaps = 27/252 (10%)

Query: 179 QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS 238
           Q  +  +      + ++       I  L ++ DG  L   G D  V      ++      
Sbjct: 113 QPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPI 172

Query: 239 FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS 298
                                           +   +      E  G        A  + 
Sbjct: 173 -----------------------QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDI 209

Query: 299 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 358
           +     +    +    +   +          V                     +  + + 
Sbjct: 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA-FGAYNVLESFDLE 268

Query: 359 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 418
           +   +    +     ++    DG    +G   G    Y A   + K  +VD       S 
Sbjct: 269 KNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE-KKGQVDLPGNASMSL 327

Query: 419 NKITGIQFSRDE 430
              +   F+RDE
Sbjct: 328 A--SVRLFTRDE 337

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.6 bits (117), Expect = 6e-07
 Identities = 19/311 (6%), Positives = 46/311 (14%), Gaps = 68/311 (21%)

Query: 208 FSPDGRYLA----------SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 257
               G   A           G     V ++   +                          
Sbjct: 72  AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF------------------------- 106

Query: 258 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC 317
                    +     F +              ++    S++  L             V  
Sbjct: 107 --LPIADIELPDAPRFSVGPRV---------HIIGNCASSACLLFFLFGSSAAAGLSVPG 155

Query: 318 NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICY 377
                +       +C   +P        GS    +    +                A   
Sbjct: 156 ASDDQLTKSA---SCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC 212

Query: 378 IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 437
                      +            D+             + +      F     Q +   
Sbjct: 213 SSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272

Query: 438 SEDSKLRILDGVDVIHKFKG-----------------LPKSGSQMSASFTTTGKH--IIS 478
                + IL                            +       +      G      +
Sbjct: 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN 332

Query: 479 IGDDCRVYVWN 489
                 + +++
Sbjct: 333 SAGTEVLDIYD 343

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.4 bits (114), Expect = 1e-06
 Identities = 11/191 (5%), Positives = 37/191 (19%), Gaps = 22/191 (11%)

Query: 208 FSPDGRYLASGGEDGVVRIWHVTS-------VAASCKSFTDDG---------GFGSNAKE 251
            S      AS           V +        ++        G             +   
Sbjct: 181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA 240

Query: 252 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR 311
                      +      D       +  Q +   K     +  +  +     +  +   
Sbjct: 241 AGATMKAAIDGNESGRKADN---FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297

Query: 312 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY--FISGSIDGKVRIWGVCEKRVVDWADVR 369
                  Q      + +    +     D     + + +    + I+     +     ++ 
Sbjct: 298 SVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356

Query: 370 DVISAICYIPD 380
               ++    +
Sbjct: 357 KGPESLSVQNE 367

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 19/205 (9%), Positives = 63/205 (30%), Gaps = 13/205 (6%)

Query: 300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 359
           + ++      + +      + + V D    V   + +     Y +    D ++ +  +  
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWA 92

Query: 360 KRVVDWADV------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 413
           K     A++      R V S+     + +  I G+                 + V     
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

Query: 414 -----KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSA 467
                      ++  I  S +  + I+   E  K+ +++  D+ +     +  +      
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212

Query: 468 SFTTTGKHIISIGDDCRVYVWNYDE 492
            + ++ ++ ++  ++         +
Sbjct: 213 GWDSSHRYFMTAANNSNKVAVIDSK 237

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 16/156 (10%), Positives = 47/156 (30%), Gaps = 3/156 (1%)

Query: 338 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 397
           + + + ++    G++ +     K++V   D    +        G+  +V           
Sbjct: 30  LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMID 89

Query: 398 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG 457
                 +  KV        + +  +      ++   I       +  I+DG  +  K   
Sbjct: 90  --LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147

Query: 458 LPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDE 492
             +  +  + ++    +   I    +   ++ N  E
Sbjct: 148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 29/285 (10%), Positives = 60/285 (21%), Gaps = 39/285 (13%)

Query: 199 HKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHV-----------------TSVAASCKSFT 240
            K    T   +PD R         G +    +                    +    + +
Sbjct: 38  DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97

Query: 241 DDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY 300
            DG           +         P +         E+           V  +  ++   
Sbjct: 98  PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157

Query: 301 LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 360
           L     D       V   +        N+       P    ++   S   +  +     +
Sbjct: 158 LYVAGPDIYK--MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 215

Query: 361 RVVDWADVRDVISAIC-YIPDGKGFIVGSITGTCHF-------------YKASGNDLKLE 406
              D  D             D K     +                     +  G   +L 
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA 275

Query: 407 KVDFHDRKKTS----GNKITGIQFSRDESQRIMITSEDSKLRILD 447
           K D   RK        +    + F +    ++ +    + L + +
Sbjct: 276 KYDLKQRKLIKAANLDHTYYCVAFDKK-GDKLYLGGTFNDLAVFN 319

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 5/33 (15%), Positives = 12/33 (36%)

Query: 199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 231
                + + F   G  L  GG    + +++  +
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 37/320 (11%), Positives = 78/320 (24%), Gaps = 38/320 (11%)

Query: 206 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA----KEGKIKF-GKKK 260
                   Y+        + +  V S     KS      FG        + +  +     
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVY-KSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 261 SSHVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCN 318
              +  +  D       + L  +       +   A S +   + +               
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 319 QC---------------LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW-GVCEKRV 362
                            +  F     V  ++    D + +++G    K+ +  G     +
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA-ADDGSLYVAGPDIYKMDVKTGKYTVAL 179

Query: 363 VDWADVRDVISAICYI---PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK--KTS 417
                 R   SA   +   P        S+  T   +K    D     + +        +
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239

Query: 418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF--------KGLPKSGSQMSASF 469
           G   T       E     + S     +I   ++ + K+        K      +    +F
Sbjct: 240 GKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAF 299

Query: 470 TTTGKHIISIGDDCRVYVWN 489
              G  +   G    + V+N
Sbjct: 300 DKKGDKLYLGGTFNDLAVFN 319

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 13/250 (5%), Positives = 47/250 (18%), Gaps = 34/250 (13%)

Query: 184 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS------------ 231
           C        S         +++   SPDG+ + +          H               
Sbjct: 72  CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD 131

Query: 232 --VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD----EVFQIEESPLQELHG 285
              A   ++F                          + +          +     +    
Sbjct: 132 GLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSA 191

Query: 286 HKGDVLDLAWSNSN----------------YLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 329
                     S  +                   +  +        +   +          
Sbjct: 192 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT 251

Query: 330 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI 389
                      +      +  ++  + + +++++  A++      + +   G    +G  
Sbjct: 252 ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT 311

Query: 390 TGTCHFYKAS 399
                 +   
Sbjct: 312 FNDLAVFNPD 321

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 33/327 (10%), Positives = 68/327 (20%), Gaps = 63/327 (19%)

Query: 194 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 253
             +      +   + S  GRYL   G DG V +  +                       +
Sbjct: 56  TVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWM--------------KEPTTVAE 100

Query: 254 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL--SCSMDKTVR 311
           IK G                             +           +              
Sbjct: 101 IKIGS--------------------------EARSIETSKMEGWEDKYAIAGAYWPPQYV 134

Query: 312 MWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCEK---RVVDWAD 367
           +      +   +           +++P      I  S      I  V E     +VD+ D
Sbjct: 135 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194

Query: 368 ----------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 417
                         +         + FI  +             + KL  ++    +   
Sbjct: 195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANAR-NKLVVIDTKEGKLVAIEDTGGQTPH 253

Query: 418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII 477
             +                   D  + ++      H       +   + +     G  + 
Sbjct: 254 PGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP----DNAWKILDSFPALGGGSLF 309

Query: 478 SIGDDCRVYVWNYDELCFPSSKQKNSV 504
                   Y++  D    P ++   SV
Sbjct: 310 IKTHPNSQYLY-VDATLNPEAEISGSV 335

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 14/166 (8%), Positives = 47/166 (28%), Gaps = 14/166 (8%)

Query: 338 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 397
           +++ + ++    G++ +       +    D    +        G+   V    G  +   
Sbjct: 30  LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMID 89

Query: 398 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG 457
                 +   V        + +  T      ++   I       +  I+DG  +  K   
Sbjct: 90  L--WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 147

Query: 458 LPKSGSQMSASFTTTGKH------------IISIGDDCRVYVWNYD 491
             +  +     +    +             I+++ +  ++ + +Y 
Sbjct: 148 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 193

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 7/95 (7%)

Query: 295 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 354
            + +          TV M   G N+             +   P     +++ S    V +
Sbjct: 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSV 270

Query: 355 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI 389
                  +     V          P   G  +GSI
Sbjct: 271 IDTATNTITATMAVGKN-------PYASGQFIGSI 298

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 29/275 (10%), Positives = 68/275 (24%), Gaps = 30/275 (10%)

Query: 192 TSQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHV-------------------TS 231
           T  ++    G +  +  SPD RYL      +  V  + +                   T 
Sbjct: 28  TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH 87

Query: 232 VAAS-----CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGH 286
           ++           + + G  S  +               +          ++    +   
Sbjct: 88  ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL 147

Query: 287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 346
           K D + L   + +  L       V   +    + +    +  Y  CV       + +   
Sbjct: 148 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK 207

Query: 347 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 406
              G +      +    +++D R              +           +  S +   L 
Sbjct: 208 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 267

Query: 407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 441
           K  F      +  +  G        + ++   + S
Sbjct: 268 KEGFQ----PTETQPRGFNVDHSG-KYLIAAGQKS 297

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 34/293 (11%), Positives = 72/293 (24%), Gaps = 17/293 (5%)

Query: 303 SCSMDKTVRMWQV---GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 359
           +    + + +W +   G      V D    V  +  +P     ++    + +V  +    
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY---- 64

Query: 360 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 419
              +   D     +A   +P     I     G   F  +                    +
Sbjct: 65  --RIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD 122

Query: 420 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI 479
            + G+      +      +        D + +              +   T  G      
Sbjct: 123 VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAG---- 178

Query: 480 GDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDC 539
                +     ++  +  ++  +SV   E     G    VQ   +  E  S    +  D 
Sbjct: 179 --PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA-ADI 235

Query: 540 SQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDG 592
               D        R +   ++ S   +          P E  P     +D  G
Sbjct: 236 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQP-RGFNVDHSG 287

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	645
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.98
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.98
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.98
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.72
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.7
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.67
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.67
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.49
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.33
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.25
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.23
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.1
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.09
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.06
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.06
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.02
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.01
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.99
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.91
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.89
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.88
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.86
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.85
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.8
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.53
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.52
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.5
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.48
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.44
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.19
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.15
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.09
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.92
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.54
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.53
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.34
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.22
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.07
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.62
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.5
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.05
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.89
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.68
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.61
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.56
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.35
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.16
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.25
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.04
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.59
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.26
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.15
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.09
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.03
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.78
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.73
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.66
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.61
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.74
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.17
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.13
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	89.31
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.02
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	82.8
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	81.25
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	80.75

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-36  Score=303.23  Aligned_cols=275  Identities=14%  Similarity=0.210  Sum_probs=219.4

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ..+++ +|...|+|++|+|+|++||||+ ||.|+|||+.+.....                                   
T Consensus        44 ~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~-----------------------------------   86 (337)
T d1gxra_          44 QINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS-----------------------------------   86 (337)
T ss_dssp             EEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS-----------------------------------
T ss_pred             EEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc-----------------------------------
Confidence            34445 7999999999999999999997 8999999998632110                                   


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe--EEEEe-cCCCcEEEEEEeeCCCCEEEEEe
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFISGS  347 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~--~~~~~-~~~~~v~~l~~~p~~~~~l~s~s  347 (645)
                           ........+|.+.|.+++|+|++ +|++|+.||+|++||+....  ....+ .|...+.+++|+| ++.++++++
T Consensus        87 -----~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~  160 (337)
T d1gxra_          87 -----PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCC  160 (337)
T ss_dssp             -----CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEE
T ss_pred             -----eeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence                 11123345799999999999997 89999999999999987543  44444 4788999999999 999999999


Q ss_pred             CCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424          348 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       348 ~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                      .|+.|++||+.+++... ...|...+.+++|++++..+++++.||.+++||+++..... ...       +...|.+++|
T Consensus       161 ~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~-~~~-------~~~~i~~l~~  232 (337)
T d1gxra_         161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ-QHD-------FTSQIFSLGY  232 (337)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEE-------CSSCEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccceeec-ccc-------cccceEEEEE
Confidence            99999999999887665 56688999999999999999999999999999998775422 221       2478999999


Q ss_pred             cCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcce
Q 006424          427 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRS  506 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~  506 (645)
                      +|++ .++++++.|+.+++||...... +....|...|.+++|+|++++|++|+.||.|++||+.+++..          
T Consensus       233 ~~~~-~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~----------  300 (337)
T d1gxra_         233 CPTG-EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI----------  300 (337)
T ss_dssp             CTTS-SEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE----------
T ss_pred             cccc-cccceecccccccccccccccc-ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEE----------
Confidence            9997 8999999999999999875443 344558899999999999999999999999999999876321          


Q ss_pred             eeeeecCCcEEEEecCCCCccccc
Q 006424          507 CEHFFSEGVSVAVQWPGIGTEQKS  530 (645)
Q Consensus       507 ~~~~~~~g~~~~v~~s~~~~~l~~  530 (645)
                       ..+.+.+.+.+++|+|++.+|++
T Consensus       301 -~~~~~~~~v~~~~~s~d~~~l~t  323 (337)
T d1gxra_         301 -FQSKESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             -EEEECSSCEEEEEECTTSCEEEE
T ss_pred             -EEccCCCCEEEEEEeCCCCEEEE
Confidence             12223444555555555555443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.2e-36  Score=298.89  Aligned_cols=255  Identities=20%  Similarity=0.370  Sum_probs=220.6

Q ss_pred             cccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424          186 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  265 (645)
Q Consensus       186 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (645)
                      |.++.....+|+||+++|++++|+|++++||||+.||+|+|||+.+                                  
T Consensus         3 w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~----------------------------------   48 (317)
T d1vyhc1           3 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----------------------------------   48 (317)
T ss_dssp             CCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT----------------------------------
T ss_pred             cCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------------
Confidence            4455566778999999999999999999999999999999999987                                  


Q ss_pred             eecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEE
Q 006424          266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYF  343 (645)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l  343 (645)
                                 ++.+..+.+|...|.+++|++++ .+++++.++.+.+|+....+....+ .|...+.++.|+| +++.+
T Consensus        49 -----------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  116 (317)
T d1vyhc1          49 -----------GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHI  116 (317)
T ss_dssp             -----------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS-SSSEE
T ss_pred             -----------CCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccC-CCceE
Confidence                       45678889999999999999987 8999999999999999887776665 4888999999999 99999


Q ss_pred             EEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424          344 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       344 ~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      ++++.|+.+++||+++++... +..|...+.+++|+|+++++++++.||.|++|++........   +.    .+...+.
T Consensus       117 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~---~~----~~~~~i~  189 (317)
T d1vyhc1         117 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE---LR----EHRHVVE  189 (317)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---EC----CCSSCEE
T ss_pred             EeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEE---Ee----cCCCCce
Confidence            999999999999999877654 667889999999999999999999999999999988765332   11    1246677


Q ss_pred             EEEEcCCC-------------------CcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCc
Q 006424          423 GIQFSRDE-------------------SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC  483 (645)
Q Consensus       423 ~i~~s~~g-------------------~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg  483 (645)
                      ++.|+|++                   ..++++++.|+.|++||..+.........|...|.+++|+|++++|++|+.||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  269 (317)
T d1vyhc1         190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK  269 (317)
T ss_dssp             EEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred             EEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCC
Confidence            88877653                   14789999999999999887665555556889999999999999999999999


Q ss_pred             cEEEEeCCCC
Q 006424          484 RVYVWNYDEL  493 (645)
Q Consensus       484 ~I~iwd~~~~  493 (645)
                      .|++||+.++
T Consensus       270 ~i~iwd~~~~  279 (317)
T d1vyhc1         270 TLRVWDYKNK  279 (317)
T ss_dssp             EEEEECCTTS
T ss_pred             eEEEEECCCC
Confidence            9999999876

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-35  Score=305.76  Aligned_cols=312  Identities=17%  Similarity=0.263  Sum_probs=236.3

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      +|++.|+||+|+|||++||+|+ |++|+|||+.++.............                           .....
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~---------------------------~~~~~  111 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------------------------KDPEN  111 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccc---------------------------ccccc
Confidence            6999999999999999999987 8999999998866543322111000                           00001


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      .......+|...|++++|+|++ +|++|+.||.|++||...++.+..+. |...|.++++++ ++..+++++.++.+++|
T Consensus       112 ~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~  190 (388)
T d1erja_         112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIW  190 (388)
T ss_dssp             -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred             cccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccc-ccccccccccceeeeee
Confidence            1223445788999999999997 89999999999999999999888775 899999999999 89999999999999999


Q ss_pred             eCCCCcEEEeeccCCCeEEEEEcc-CCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424          356 GVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  434 (645)
Q Consensus       356 d~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l  434 (645)
                      |.++........+.....++.+++ ++++|++|+.||.|++||..+................|...|.+++|+|++ .+|
T Consensus       191 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l  269 (388)
T d1erja_         191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSV  269 (388)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEE
T ss_pred             eccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC-CEE
Confidence            999988877766666677777766 789999999999999999987765433222222233456889999999997 899


Q ss_pred             EEEECCCeEEEEECCcce------------eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC
Q 006424          435 MITSEDSKLRILDGVDVI------------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN  502 (645)
Q Consensus       435 ~~~s~dg~I~iwd~~~~~------------~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~  502 (645)
                      ++++.|+.|++||+....            .......|...|.+++|+|++++|++|+.||.|++||+.+++...     
T Consensus       270 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~-----  344 (388)
T d1erja_         270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL-----  344 (388)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE-----
T ss_pred             EEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE-----
Confidence            999999999999975321            122334578899999999999999999999999999998763211     


Q ss_pred             CcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCC
Q 006424          503 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP  582 (645)
Q Consensus       503 ~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~  582 (645)
                          . .-.+.+.+..+++.+                                     +..|+||+.++++++. |++|+
T Consensus       345 ----~-l~~H~~~V~~~~~~~-------------------------------------~~~~spd~~~l~s~s~-Dg~I~  381 (388)
T d1erja_         345 ----M-LQGHRNSVISVAVAN-------------------------------------GSSLGPEYNVFATGSG-DCKAR  381 (388)
T ss_dssp             ----E-EECCSSCEEEEEECS-------------------------------------SCTTCTTCEEEEEEET-TSEEE
T ss_pred             ----E-EeCCCCCEEEEEEec-------------------------------------CcccCCCCCEEEEEeC-CCEEE
Confidence                0 112345555555432                                     2348899999999888 89999


Q ss_pred             CCCCc
Q 006424          583 LWDVT  587 (645)
Q Consensus       583 iWd~~  587 (645)
                      +|+++
T Consensus       382 iW~~~  386 (388)
T d1erja_         382 IWKYK  386 (388)
T ss_dssp             EEEEE
T ss_pred             EEeee
Confidence            99875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-34  Score=291.33  Aligned_cols=248  Identities=20%  Similarity=0.380  Sum_probs=208.8

Q ss_pred             cccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       190 ~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      +...++|+||++.|++++|+|++++||||+.||+|+|||+.+                                      
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~--------------------------------------   86 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT--------------------------------------   86 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--------------------------------------
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccc--------------------------------------
Confidence            446678999999999999999999999999999999999987                                      


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe----EEEE---------------------
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNV---------------------  323 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~----~~~~---------------------  323 (645)
                             +..+..+.+|...|.+++|+|++ ++++|+.|+.+++|+.....    ....                     
T Consensus        87 -------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (340)
T d1tbga_          87 -------TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT  159 (340)
T ss_dssp             -------TEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEE
T ss_pred             -------ceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccc
Confidence                   44567788999999999999987 89999999999999864321    0000                     


Q ss_pred             ---------------------ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCC
Q 006424          324 ---------------------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDG  381 (645)
Q Consensus       324 ---------------------~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g  381 (645)
                                           ..+...+....+.+ ...++++|+.|+.|++||+++++... +..|...|++++|+|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~  238 (340)
T d1tbga_         160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG  238 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             ccccccccccccccccccccccccceeEeeecccc-ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCC
Confidence                                 01334566777777 88899999999999999999988765 67789999999999999


Q ss_pred             CEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCC
Q 006424          382 KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS  461 (645)
Q Consensus       382 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~  461 (645)
                      ++|++|+.||.|++||++....... ..    ...+...+.+++|+|++ .+|++|+.||.|++||..+.........|.
T Consensus       239 ~~l~s~s~d~~i~~~~~~~~~~~~~-~~----~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~  312 (340)
T d1tbga_         239 NAFATGSDDATCRLFDLRADQELMT-YS----HDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEE-EC----CTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             CEEEEEeCCCeEEEEeecccccccc-cc----cccccCceEEEEECCCC-CEEEEEECCCEEEEEECCCCcEEEEEcCCC
Confidence            9999999999999999987664322 11    12234679999999998 899999999999999988655555555688


Q ss_pred             CCeEEEEEecCCCEEEEEeCCccEEEEe
Q 006424          462 GSQMSASFTTTGKHIISIGDDCRVYVWN  489 (645)
Q Consensus       462 ~~i~~v~~sp~~~~l~t~s~dg~I~iwd  489 (645)
                      +.|++++|+|++++|+||+.||.|+|||
T Consensus       313 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         313 NRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.9e-35  Score=299.39  Aligned_cols=249  Identities=17%  Similarity=0.275  Sum_probs=202.1

Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCC
Q 006424          199 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES  278 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (645)
                      +..+|+|++|+|||++||+|+.||.|+|||+.+++                                           ..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-------------------------------------------~~   42 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-------------------------------------------WV   42 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-------------------------------------------EE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-------------------------------------------EE
Confidence            34789999999999999999999999999987632                                           12


Q ss_pred             CceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe---cCCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          279 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      .+..+.+|.++|.+++|+|++ +|++|+.|++|++||+.++.....+   .|...|.+++|+| +++.|++++.|+++++
T Consensus        43 ~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i  121 (371)
T d1k8kc_          43 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISI  121 (371)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEE
T ss_pred             EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccc-ccccceeecccCccee
Confidence            356788999999999999987 8999999999999999887655443   4788999999999 9999999999999999


Q ss_pred             EeCCCCcE-----EEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE-----------eeccccccCC
Q 006424          355 WGVCEKRV-----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV-----------DFHDRKKTSG  418 (645)
Q Consensus       355 wd~~~~~~-----~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~  418 (645)
                      |++.....     .....|...|.+++|+|++++|++|+.||.+++|+...........           ........|.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (371)
T d1k8kc_         122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC  201 (371)
T ss_dssp             EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred             eeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCcc
Confidence            99866442     1234678899999999999999999999999999986543211100           0011123456


Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          419 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       419 ~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ..|.+++|+|+| .+|++++.|+.|++||............|..+|.+++|+|++++|++|+ |+.+++|..+..
T Consensus       202 ~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~  274 (371)
T d1k8kc_         202 GWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSA  274 (371)
T ss_dssp             SCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred             CcEEEEEeeccc-ccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence            789999999998 7999999999999999886555555556888999999999998887665 787778776554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-34  Score=289.39  Aligned_cols=241  Identities=21%  Similarity=0.349  Sum_probs=212.5

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      ..+|.+.|++++|+|+|++|++|+.||.|++||+....                                          
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~------------------------------------------  130 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT------------------------------------------  130 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-------------------------------------------
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc------------------------------------------
Confidence            45799999999999999999999999999999987521                                          


Q ss_pred             cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVR  353 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~  353 (645)
                       ......+.+|...|.+++|+|++ ++++++.|+.|++|++.++++..... |...|.+++|++ ++..+++++.|+.++
T Consensus       131 -~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~  208 (337)
T d1gxra_         131 -PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVR  208 (337)
T ss_dssp             --EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred             -ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence             22345677899999999999987 89999999999999999998877764 888999999999 999999999999999


Q ss_pred             EEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006424          354 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR  433 (645)
Q Consensus       354 vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~  433 (645)
                      +||+++++.+....+...|.+++|+|+++++++|+.||.+++||++......    .    ..|...|++++|+|+| .+
T Consensus       209 i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~----~~~~~~i~~v~~s~~g-~~  279 (337)
T d1gxra_         209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ----L----HLHESCVLSLKFAYCG-KW  279 (337)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE----E----CCCSSCEEEEEECTTS-SE
T ss_pred             ccccccceeecccccccceEEEEEcccccccceecccccccccccccccccc----c----cccccccceEEECCCC-CE
Confidence            9999999998888899999999999999999999999999999998776422    1    1235789999999998 79


Q ss_pred             EEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          434 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      |++++.|+.|++||.......... .|...|.+++|+|++++|++|+.||+|+|||+
T Consensus       280 l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         280 FVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            999999999999998765444433 37789999999999999999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.6e-34  Score=286.02  Aligned_cols=245  Identities=16%  Similarity=0.181  Sum_probs=198.4

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      +.++++||.++|++++|+|+|++|+||+.||+|++||+.++                                       
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~---------------------------------------   44 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG---------------------------------------   44 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---------------------------------------
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC---------------------------------------
Confidence            46789999999999999999999999999999999999873                                       


Q ss_pred             ceeccCCCceee-ccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEE----EEecCCCcEEEEEEeeCCCCEEEEE
Q 006424          272 VFQIEESPLQEL-HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL----NVFDHHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       272 ~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~----~~~~~~~~v~~l~~~p~~~~~l~s~  346 (645)
                            +....+ .+|...|++++|+|++.+++++.|+.+++|+.......    ....+...+.+++|+| ++.+++++
T Consensus        45 ------~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~~~~  117 (299)
T d1nr0a2          45 ------ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA  117 (299)
T ss_dssp             ------CEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE
T ss_pred             ------cEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCcccccccccccccccccccccccc-cccccccc
Confidence                  333444 36899999999999998899999999999998654321    1224677899999999 88877766


Q ss_pred             eCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424          347 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                      + ++.+++|+....  . .......+.+++|+|+++++++|+.||.+++||+++..........      |...|++++|
T Consensus       118 ~-~~~i~~~~~~~~--~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~------~~~~i~~~~~  187 (299)
T d1nr0a2         118 C-YKHIAIYSHGKL--T-EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV------HPAEITSVAF  187 (299)
T ss_dssp             E-SSEEEEEETTEE--E-EEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEE------CSSCEEEEEE
T ss_pred             c-cccccccccccc--c-cccccccccccccccccccccccccccccccccccccccccccccc------cccccccccc
Confidence            5 578999985432  2 2234456889999999999999999999999999877643322211      3478999999


Q ss_pred             cCCCCcEEEEEECCCeEEEEECCcceee---EeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          427 SRDESQRIMITSEDSKLRILDGVDVIHK---FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~~~~~~---~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      +|++ .++++++.|+.|++||..+....   .....|...|++++|+|++++|++|+.||.|++||+.++
T Consensus       188 ~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         188 SNNG-AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             CTTS-SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             cccc-ccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCC
Confidence            9997 89999999999999997643222   222347889999999999999999999999999999876

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-33  Score=282.94  Aligned_cols=255  Identities=19%  Similarity=0.253  Sum_probs=205.1

Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      ...+.+.+|.+.|++++|+|+|++||+|+.||+|++||+.+...                                    
T Consensus        49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~------------------------------------   92 (311)
T d1nr0a1          49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH------------------------------------   92 (311)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC------------------------------------
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc------------------------------------
Confidence            35556789999999999999999999999999999999987321                                    


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeC--CCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCC-EEEE
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDN-YFIS  345 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~--dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~-~l~s  345 (645)
                             .....+.+|.+.|.+++|+|++ ++++++.  +..+++|++++++....+. |...|++++|+| +++ .+++
T Consensus        93 -------~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l~s  164 (311)
T d1nr0a1          93 -------ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIIS  164 (311)
T ss_dssp             -------CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEE
T ss_pred             -------ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccc-cceeeecc
Confidence                   1234577899999999999987 7888775  4569999999998877774 888999999999 665 5889


Q ss_pred             EeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424          346 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                      |+.|+.|++||+++++... ...|...|+++.|+|+++++++++.||.+++||+..................|...|+++
T Consensus       165 gs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL  244 (311)
T ss_dssp             EETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999987665 567889999999999999999999999999999987764332111122234567899999


Q ss_pred             EEcCCCCcEEEEEECCCeEEEEECCcce--eeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          425 QFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       425 ~~s~~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      +|+|++ .+|++|+.||.|+|||.++..  ..+..+ +......+.+.+++++|++++.||.|++||.+
T Consensus       245 ~~s~~~-~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~-~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         245 TWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVG-TRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECC-SSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             ccCCCC-CEEEEEeCCCeEEEEECCCCcEEEEEECC-CCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            999998 899999999999999987543  333332 11122333445567789999999999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-34  Score=289.41  Aligned_cols=317  Identities=17%  Similarity=0.272  Sum_probs=232.7

Q ss_pred             ccccccccCcE-EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          193 SQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       193 ~~~l~~H~~~V-~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ..+|+||.+.| +|++|  ++++||||+.||+|+|||+.+                                        
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~----------------------------------------   42 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN----------------------------------------   42 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTT----------------------------------------
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCC----------------------------------------
Confidence            56799999885 66665  678999999999999999987                                        


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s~s~  348 (645)
                           ++.+..+.+|.+.|++++|+|+++|++|+.|++|++|++...+......   +........+.+ ++.++++++.
T Consensus        43 -----~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  116 (355)
T d1nexb2          43 -----KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSR  116 (355)
T ss_dssp             -----TEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET-TEEEEEEEET
T ss_pred             -----CcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccccccccccccccccccccccccc-ccceeeeecC
Confidence                 4557888999999999999998899999999999999999988877664   333455666777 8889999999


Q ss_pred             CCcEEEEeCCCCcEEEe------------------------eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCcee
Q 006424          349 DGKVRIWGVCEKRVVDW------------------------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK  404 (645)
Q Consensus       349 dg~i~vwd~~~~~~~~~------------------------~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~  404 (645)
                      |+.|++||+++......                        ..+...  ...+.++++.++++..|+.+++||+.+....
T Consensus       117 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  194 (355)
T d1nexb2         117 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL  194 (355)
T ss_dssp             TSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSC--EEEEEEETTEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccc--ccccccccceeeeecccceeeeeecccccce
Confidence            99999999987543321                        111222  2345678899999999999999999876543


Q ss_pred             eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424          405 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR  484 (645)
Q Consensus       405 ~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~  484 (645)
                      .. .  .    .+...+.++.|+|++ .++++++.|+.|++||..+.........|...|.+++|+  +++|++|+.||.
T Consensus       195 ~~-~--~----~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~  264 (355)
T d1nexb2         195 YI-L--S----GHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS  264 (355)
T ss_dssp             EE-E--C----CCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSE
T ss_pred             ee-e--e----ccccccccccccccc-eeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccc
Confidence            22 1  1    124678999999997 899999999999999988766666666688999999886  579999999999


Q ss_pred             EEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccc
Q 006424          485 VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWF  564 (645)
Q Consensus       485 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~f  564 (645)
                      |++||+.+....           ..++....                                           ....+|
T Consensus       265 i~iwd~~~~~~~-----------~~~~~~~~-------------------------------------------~~~~~~  290 (355)
T d1nexb2         265 IRGWDANDYSRK-----------FSYHHTNL-------------------------------------------SAITTF  290 (355)
T ss_dssp             EEEEETTTCCEE-----------EEEECTTC-------------------------------------------CCCCEE
T ss_pred             ccccccccccee-----------cccccCCc-------------------------------------------eEEEEE
Confidence            999998765211           01111000                                           011235


Q ss_pred             cCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCC--ccCCCCcceEEEEecCCCeEeEEE
Q 006424          565 SNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFH  637 (645)
Q Consensus       565 s~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~ivt~s~Dg~Iriw~  637 (645)
                      ++++.++++++  |+.|++||+.+++.          +......|...+  +++++  ..++++++.||+++||.
T Consensus       291 ~~~~~~l~~g~--d~~i~vwd~~tg~~----------~~~~~~~~~~~V~~v~~~~--~~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         291 YVSDNILVSGS--ENQFNIYNLRSGKL----------VHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EECSSEEEEEE--TTEEEEEETTTCCB----------CCSCTTTTCSEEEEEEEET--TEEEEEEESSSCEEEEE
T ss_pred             cCCCCEEEEEe--CCEEEEEECCCCCE----------EEEEecCCCCCEEEEEEcC--CeEEEEEECCCcEEEEE
Confidence            66666666554  78999999998831          111122233333  34443  45788999999977765

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-33  Score=289.10  Aligned_cols=250  Identities=24%  Similarity=0.421  Sum_probs=205.9

Q ss_pred             cccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceec
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI  275 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (645)
                      ..+|...|++++|+|+|++|++|+.||.|++||...                                            
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~--------------------------------------------  152 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN--------------------------------------------  152 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT--------------------------------------------
T ss_pred             ccCCCCCEEEEEECCCCCcceecccccccccccccc--------------------------------------------
Confidence            457999999999999999999999999999999886                                            


Q ss_pred             cCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          276 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       276 ~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                       .+.+..+.+|...|.+++|++++ .+++++.++.+++||..+........+.....++.+++.++++|++|+.|+.|++
T Consensus       153 -~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  231 (388)
T d1erja_         153 -RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV  231 (388)
T ss_dssp             -TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEE
T ss_pred             -cccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEE
Confidence             34466778899999999999987 8999999999999999999988888877777888888878899999999999999


Q ss_pred             EeCCCCcEEE--------eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE-----eeccccccCCCCe
Q 006424          355 WGVCEKRVVD--------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV-----DFHDRKKTSGNKI  421 (645)
Q Consensus       355 wd~~~~~~~~--------~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~i  421 (645)
                      ||.+++....        ...|...|++++|+|++++|++|+.||.|++||++.........     ........|...|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  311 (388)
T d1erja_         232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV  311 (388)
T ss_dssp             EETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCE
T ss_pred             eecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceE
Confidence            9999876554        23577899999999999999999999999999997654432110     0111122346789


Q ss_pred             EEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEE------ecCCCEEEEEeCCccEEEEeCC
Q 006424          422 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF------TTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       422 ~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~------sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      .+++|+|++ .+|++|+.||.|++||+.+.........|.+.|.++++      +|++++|+||+.||+|+||+++
T Consensus       312 ~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         312 LSVATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999997 89999999999999998865555445558899999875      6789999999999999999975

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.4e-33  Score=277.41  Aligned_cols=242  Identities=17%  Similarity=0.226  Sum_probs=201.3

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccC
Q 006424          198 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE  277 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (645)
                      .+.+.+.+++++|+|+.|+.++ ++.|.+||+.+                                             .
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~---------------------------------------------~   48 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS---------------------------------------------L   48 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC---------------------------------------------S
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC---------------------------------------------C
Confidence            4556778899999999999986 55799999986                                             4


Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEE--EEe-cCCCcEEEEEEeeCCCCEEEEEeC--CCc
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL--NVF-DHHNYVTCVQFNPIDDNYFISGSI--DGK  351 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~--~~~-~~~~~v~~l~~~p~~~~~l~s~s~--dg~  351 (645)
                      .....+.+|...|++++|+|++ +|++|+.||+|++||+.++...  ..+ .|...|.+++|+| +++++++++.  +..
T Consensus        49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~  127 (311)
T d1nr0a1          49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERF  127 (311)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCS
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccc-ccccccccccccccc
Confidence            5567788999999999999998 8999999999999999877643  333 4889999999999 9999999886  456


Q ss_pred             EEEEeCCCCcEEE-eeccCCCeEEEEEccCCCE-EEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          352 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       352 i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      +++|++.+++... +..|...|++++|+|++++ +++|+.||.|++||+++......   .    ..|...|+++.|+|+
T Consensus       128 ~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~---~----~~~~~~i~~v~~~p~  200 (311)
T d1nr0a1         128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST---F----GEHTKFVHSVRYNPD  200 (311)
T ss_dssp             EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE---E----CCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccccccceeeecccccccccccccccccccccc---c----ccccccccccccCcc
Confidence            9999998876544 6778899999999999885 78899999999999987654322   1    223578999999999


Q ss_pred             CCcEEEEEECCCeEEEEECCccee--eEee-----cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          430 ESQRIMITSEDSKLRILDGVDVIH--KFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~~--~~~~-----~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      + .++++++.|+.|++||......  .+..     ..|...|.+++|+|++++|++|+.||.|+|||+++++
T Consensus       201 ~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         201 G-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK  271 (311)
T ss_dssp             S-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             c-cccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            7 8999999999999999774332  2221     3467899999999999999999999999999998763

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-32  Score=269.47  Aligned_cols=283  Identities=22%  Similarity=0.330  Sum_probs=239.0

Q ss_pred             hhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchhHh
Q 006424           98 ELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEV  177 (645)
Q Consensus        98 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (645)
                      .|+||...|..++|+|++.. +++++.            |++++.|-                                 
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~-l~s~s~------------Dg~i~iWd---------------------------------   45 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSV-MVSASE------------DATIKVWD---------------------------------   45 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSE-EEEEES------------SSCEEEEE---------------------------------
T ss_pred             EEcCCCCCeEEEEEcCCCCE-EEEEeC------------CCeEEEEE---------------------------------
Confidence            68999999999999999876 888877            77666660                                 


Q ss_pred             hhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEec
Q 006424          178 KQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG  257 (645)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (645)
                               .......+++++|.+.|++++|+|++.++++++.++.+.+|+...                          
T Consensus        46 ---------~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------   90 (317)
T d1vyhc1          46 ---------YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--------------------------   90 (317)
T ss_dssp             ---------TTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--------------------------
T ss_pred             ---------CCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc--------------------------
Confidence                     000113456789999999999999999999999999999999876                          


Q ss_pred             ccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEE
Q 006424          258 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQF  335 (645)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~  335 (645)
                                         ......+.+|...+.++.|++++ .+++++.|+.+++||+++++.+..+. |...+.+++|
T Consensus        91 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (317)
T d1vyhc1          91 -------------------FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP  151 (317)
T ss_dssp             -------------------SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             -------------------cccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeec
Confidence                               33445667899999999999987 89999999999999999999888775 8889999999


Q ss_pred             eeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCC--------------------CEEEEEecCCeEE
Q 006424          336 NPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDG--------------------KGFIVGSITGTCH  394 (645)
Q Consensus       336 ~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g--------------------~~l~~g~~dg~i~  394 (645)
                      +| ++++|++++.|+.|++|++.++.... +..+...+.++.|+|++                    ..+++++.||.|+
T Consensus       152 ~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  230 (317)
T d1vyhc1         152 NQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  230 (317)
T ss_dssp             CT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             cc-CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEE
Confidence            99 99999999999999999999877654 66788889999888754                    5789999999999


Q ss_pred             EEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC
Q 006424          395 FYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK  474 (645)
Q Consensus       395 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~  474 (645)
                      +||+++...... +  .    .|...|.+++|+|++ .+|++++.||.|++||+.+.........|...|++++|+|+++
T Consensus       231 ~~~~~~~~~~~~-~--~----~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~  302 (317)
T d1vyhc1         231 MWDVSTGMCLMT-L--V----GHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP  302 (317)
T ss_dssp             EEETTTTEEEEE-E--E----CCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSS
T ss_pred             EEECCCCcEEEE-E--e----CCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence            999988764322 2  2    235789999999997 8999999999999999875443344444889999999999999


Q ss_pred             EEEEEeCCccEEEEe
Q 006424          475 HIISIGDDCRVYVWN  489 (645)
Q Consensus       475 ~l~t~s~dg~I~iwd  489 (645)
                      +|++|+.||+|+|||
T Consensus       303 ~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         303 YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEETTSEEEEEC
T ss_pred             EEEEEeCCCeEEEeC
Confidence            999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.6e-30  Score=261.92  Aligned_cols=329  Identities=16%  Similarity=0.247  Sum_probs=232.1

Q ss_pred             cccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          190 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       190 ~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      +...++|+||++.|.+ +++++|++|||||.||+|+|||+.+                                      
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~--------------------------------------   46 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT--------------------------------------   46 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT--------------------------------------
T ss_pred             CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC--------------------------------------
Confidence            4466789999999865 3666899999999999999999987                                      


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI  348 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~  348 (645)
                             ++++..+.+|.+.|.+++|++ ++|++|+.|+.+++|+........... +...+.....   ....++.+..
T Consensus        47 -------~~~~~~~~~h~~~V~~v~~~~-~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  115 (342)
T d2ovrb2          47 -------GKCLRTLVGHTGGVWSSQMRD-NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL---HEKRVVSGSR  115 (342)
T ss_dssp             -------CCEEEECCCCSSCEEEEEEET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---ETTEEEEEET
T ss_pred             -------CCEEEEEeCCCCCEEEEEeCC-CccccceecccccccccccccceecccccceeEeeeec---cccccccccc
Confidence                   456788899999999999987 489999999999999998887766664 4445555444   4578888999


Q ss_pred             CCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          349 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       349 dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      |+.+.+|+..+++............. ...+....+++++.|+.+++||.........   +..    |...+..  +++
T Consensus       116 d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~---~~~----~~~~~~~--~~~  185 (342)
T d2ovrb2         116 DATLRVWDIETGQCLHVLMGHVAAVR-CVQYDGRRVVSGAYDFMVKVWDPETETCLHT---LQG----HTNRVYS--LQF  185 (342)
T ss_dssp             TSEEEEEESSSCCEEEEEECCSSCEE-EEEECSSCEEEEETTSCEEEEEGGGTEEEEE---ECC----CSSCEEE--EEE
T ss_pred             ceeEEEeecccccceeeeecccccce-eeccccceeeeecCCCeEEEeecccceeeEE---EcC----ccccccc--ccC
Confidence            99999999998887665444433333 3456677899999999999999987654322   222    2234444  444


Q ss_pred             CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceee
Q 006424          429 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  508 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  508 (645)
                      ++ .++++++.||.|++||............|...+.+++++  +++|++|+.||.|++||+...+........      
T Consensus       186 ~~-~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~------  256 (342)
T d2ovrb2         186 DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGP------  256 (342)
T ss_dssp             CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECST------
T ss_pred             CC-CEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccccccccccccc------
Confidence            55 689999999999999988665555556688888887775  569999999999999998765211100000      


Q ss_pred             eeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCcc
Q 006424          509 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI  588 (645)
Q Consensus       509 ~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~  588 (645)
                       ..+...+.                                             ++++++.++++++. |+.|++||+.+
T Consensus       257 -~~~~~~~~---------------------------------------------~~~~~~~~~~s~s~-Dg~i~iwd~~t  289 (342)
T d2ovrb2         257 -NKHQSAVT---------------------------------------------CLQFNKNFVITSSD-DGTVKLWDLKT  289 (342)
T ss_dssp             -TSCSSCEE---------------------------------------------EEEECSSEEEEEET-TSEEEEEETTT
T ss_pred             -ceeeecee---------------------------------------------ecccCCCeeEEEcC-CCEEEEEECCC
Confidence             00011111                                             12334456677776 89999999988


Q ss_pred             CCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCe----EeEEEec
Q 006424          589 DSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGM----IKTFHNY  639 (645)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~----Iriw~~~  639 (645)
                      ++..    ..+.......+......+++++ ++.+|++|+.||+    |++||+.
T Consensus       290 g~~i----~~~~~~~~~~~~~~v~~v~~s~-~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         290 GEFI----RNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             CCEE----EEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCEE----EEEecccCCCCCCCEEEEEECC-CCCEEEEEeCCCCCeeEEEEEeCC
Confidence            7300    0000000111111222345555 7999999999996    9999975

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=1.8e-30  Score=261.95  Aligned_cols=287  Identities=13%  Similarity=0.208  Sum_probs=218.8

Q ss_pred             CCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      .+..++|.||.+.|++++|+|++ +|+||+.||+|++||+.+++.+..+. |...|.+++|+| +++++++|+.|+.+++
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeec-cceeeeeecccceeec
Confidence            34567899999999999999997 89999999999999999999998885 888999999999 9999999999999999


Q ss_pred             EeCCCCc-----EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          355 WGVCEKR-----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       355 wd~~~~~-----~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      |+.....     ...+..+......... ..+..+.....++....+.............       +...+....+.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  195 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTG-------HTGDVMSLSLAPD  195 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEE-EETTEEEEEETTTEEEEEETTTTEEEEEEEC-------CSSCEEEEEECTT
T ss_pred             ccccccccccccceeccccccccccccc-ccccccccccccccccccccccccccccccc-------cceeEeeeccccc
Confidence            9976533     2234455555544444 4566788888899999888876554322111       2367888899998


Q ss_pred             CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeee
Q 006424          430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH  509 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  509 (645)
                      + .++++++.|+.|++||+++.........|...|++++|+|++++|++|+.||.|++||+.......           .
T Consensus       196 ~-~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~-----------~  263 (340)
T d1tbga_         196 T-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-----------T  263 (340)
T ss_dssp             S-SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-----------E
T ss_pred             c-ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccc-----------c
Confidence            6 899999999999999998766655556689999999999999999999999999999997652100           0


Q ss_pred             eecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccC
Q 006424          510 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  589 (645)
Q Consensus       510 ~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~  589 (645)
                      +.                                        ...+...+.+++|+|+++++++++. |+.|++||+.++
T Consensus       264 ~~----------------------------------------~~~~~~~i~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~  302 (340)
T d1tbga_         264 YS----------------------------------------HDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKA  302 (340)
T ss_dssp             EC----------------------------------------CTTCCSCEEEEEECSSSCEEEEEET-TSCEEEEETTTC
T ss_pred             cc----------------------------------------cccccCceEEEEECCCCCEEEEEEC-CCEEEEEECCCC
Confidence            00                                        0011122445567777777777776 889999998887


Q ss_pred             CCCCcCChhhhHhhhhhccCCCC--CccCCCCcceEEEEecCCCeEeEEE
Q 006424          590 SDGYCQDPQQQRLQQQCLNNVDD--VRAISATWGLVIVTAGCDGMIKTFH  637 (645)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~ivt~s~Dg~Iriw~  637 (645)
                      .           .......|...  .+++++ |+.+|+|||.||+|+||+
T Consensus       303 ~-----------~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         303 D-----------RAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             C-----------EEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             c-----------EEEEEcCCCCCEEEEEEeC-CCCEEEEEccCCEEEEeC
Confidence            2           12222233333  345555 799999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.98  E-value=7e-31  Score=261.01  Aligned_cols=290  Identities=14%  Similarity=0.133  Sum_probs=219.3

Q ss_pred             chhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccc
Q 006424           94 CMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKAN  173 (645)
Q Consensus        94 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (645)
                      .+.++|.||...|..++|+|++.. +++++.            |+.++.|-          ++                 
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~-l~s~s~------------Dg~v~vWd----------~~-----------------   42 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKT-LFSADA------------EGHINSWD----------IS-----------------   42 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSE-EEEEET------------TSCEEEEE----------TT-----------------
T ss_pred             ccceEcCCCCCCcEEEEECCCCCE-EEEEcC------------CCeEEEEE----------CC-----------------
Confidence            467789999999999999999877 777777            66666650          00                 


Q ss_pred             hhHhhhccccccccccccccccc-ccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCc
Q 006424          174 KMEVKQNKKKCMEFTALYTSQEI-QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG  252 (645)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  252 (645)
                                     .....+.+ .+|.+.|++++|+|+|++ ++++.|+.+++|+......                  
T Consensus        43 ---------------~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~------------------   88 (299)
T d1nr0a2          43 ---------------TGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGV------------------   88 (299)
T ss_dssp             ---------------TCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSS------------------
T ss_pred             ---------------CCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCccc------------------
Confidence                           00011222 479999999999999975 5667799999999865211                  


Q ss_pred             eEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEE
Q 006424          253 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC  332 (645)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~  332 (645)
                                              .........|...+.+++|++++.+++++.++.+++|+...  . ........+.+
T Consensus        89 ------------------------~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~-~~~~~~~~~~~  141 (299)
T d1nr0a2          89 ------------------------DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--L-TEVPISYNSSC  141 (299)
T ss_dssp             ------------------------CTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--E-EEEECSSCEEE
T ss_pred             ------------------------ccccccccccccccccccccccccccccccccccccccccc--c-ccccccccccc
Confidence                                    11122334577889999999998666666778999998542  2 22334556889


Q ss_pred             EEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEee
Q 006424          333 VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF  410 (645)
Q Consensus       333 l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  410 (645)
                      ++|+| +++++++|+.|+.|++||+++++...  ...|...|++++|+|+++++++++.||.|++||+.+.......   
T Consensus       142 ~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~---  217 (299)
T d1nr0a2         142 VALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---  217 (299)
T ss_dssp             EEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---
T ss_pred             ccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---
Confidence            99999 99999999999999999998876543  5678899999999999999999999999999999876543321   


Q ss_pred             ccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc--eeeEeecC-CCCCeEEEEEecCCCEEEEEeCCccEEE
Q 006424          411 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYV  487 (645)
Q Consensus       411 ~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~-~~~~i~~v~~sp~~~~l~t~s~dg~I~i  487 (645)
                       .....|...|++++|+|++ .+|++++.|+.|++||+...  ........ +...+..+. ++++++|++|+.||.|++
T Consensus       218 -~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~i  294 (299)
T d1nr0a2         218 -NSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKF  294 (299)
T ss_dssp             -CCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEE
T ss_pred             -ccccccccccccccccccc-cceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEE
Confidence             1223356889999999998 89999999999999998743  22233333 344566655 466789999999999999


Q ss_pred             EeCC
Q 006424          488 WNYD  491 (645)
Q Consensus       488 wd~~  491 (645)
                      ||+.
T Consensus       295 Wdl~  298 (299)
T d1nr0a2         295 WNVP  298 (299)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.5e-30  Score=267.57  Aligned_cols=249  Identities=14%  Similarity=0.219  Sum_probs=195.6

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      ..++|++|.++|++++|+|++++|++|+.|++|+|||+.++.                                      
T Consensus        43 ~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~--------------------------------------   84 (371)
T d1k8kc_          43 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT--------------------------------------   84 (371)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE--------------------------------------
T ss_pred             EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc--------------------------------------
Confidence            456788999999999999999999999999999999997632                                      


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE----e-cCCCcEEEEEEeeCCCCEEEE
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV----F-DHHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~----~-~~~~~v~~l~~~p~~~~~l~s  345 (645)
                           ......+.+|...|.+++|+|++ .|++|+.|++|++|+++.......    . .|...|.+++|+| ++.+|++
T Consensus        85 -----~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s  158 (371)
T d1k8kc_          85 -----WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAA  158 (371)
T ss_dssp             -----EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEE
T ss_pred             -----cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccc-cccceec
Confidence                 12234566799999999999987 899999999999999876543222    1 3788999999999 9999999


Q ss_pred             EeCCCcEEEEeCCCCc-------------------EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeee
Q 006424          346 GSIDGKVRIWGVCEKR-------------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE  406 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~-------------------~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~  406 (645)
                      |+.|++|++||.....                   ......|...|.+++|+|+|+++++++.||.|++||+....... 
T Consensus       159 ~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~-  237 (371)
T d1k8kc_         159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA-  237 (371)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE-
T ss_pred             cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccccee-
Confidence            9999999999986432                   33456788889999999999999999999999999998776432 


Q ss_pred             EEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE--CCcceeeEe----------------------------
Q 006424          407 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD--GVDVIHKFK----------------------------  456 (645)
Q Consensus       407 ~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd--~~~~~~~~~----------------------------  456 (645)
                      .+..      |..+|.+++|+|++ .+++ ++.|+.+++|.  .......+.                            
T Consensus       238 ~~~~------~~~~v~s~~fs~d~-~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (371)
T d1k8kc_         238 TLAS------ETLPLLAVTFITES-SLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS  309 (371)
T ss_dssp             EEEC------SSCCEEEEEEEETT-EEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred             eeec------ccccceeeeecCCC-CEEE-EEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeE
Confidence            2222      34789999999997 5555 45577666654  211110000                            


Q ss_pred             -----------ecCCCCCeEEEEEecCC----CEEEEEeCCccEEEEeCCCC
Q 006424          457 -----------GLPKSGSQMSASFTTTG----KHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       457 -----------~~~~~~~i~~v~~sp~~----~~l~t~s~dg~I~iwd~~~~  493 (645)
                                 ...|.+.|+++++.+.+    ..++|+|.||.|+|||+++.
T Consensus       310 ~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         310 SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             --------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             EeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence                       01277789999998754    36899999999999998654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.8e-30  Score=255.98  Aligned_cols=258  Identities=15%  Similarity=0.126  Sum_probs=194.0

Q ss_pred             ccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          191 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       191 ~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      ++++.+++|++.|++|+|+|++++||+|+.||+|+|||+......                                   
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~-----------------------------------   46 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-----------------------------------   46 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-----------------------------------
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc-----------------------------------
Confidence            356778999999999999999999999999999999999763211                                   


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEE
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISG  346 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~  346 (645)
                             ..+....+|.++|.+++|+|+ + +|++|+.||.|++|++..+.......  +........+.+ +...++++
T Consensus        47 -------~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  118 (342)
T d1yfqa_          47 -------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAA  118 (342)
T ss_dssp             -------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEE
T ss_pred             -------eEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccccccccccc-cccccccc
Confidence                   112333469999999999976 4 79999999999999998877666654  333444555566 88999999


Q ss_pred             eCCCcEEEEeCCCCcEE----E-ee--ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCC
Q 006424          347 SIDGKVRIWGVCEKRVV----D-WA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN  419 (645)
Q Consensus       347 s~dg~i~vwd~~~~~~~----~-~~--~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  419 (645)
                      +.++.+++||++.....    . ..  ........+.+.+.+..+++++.||.|++||+..............    ...
T Consensus       119 ~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~----~~~  194 (342)
T d1yfqa_         119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG----LKY  194 (342)
T ss_dssp             ETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECS----CSS
T ss_pred             ccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecc----ccc
Confidence            99999999998653311    1 11  1233455677888999999999999999999987665433222221    124


Q ss_pred             CeEEEEEcCCCCcEEEEEECCCeEEEEECCcce--------eeE-------eecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424          420 KITGIQFSRDESQRIMITSEDSKLRILDGVDVI--------HKF-------KGLPKSGSQMSASFTTTGKHIISIGDDCR  484 (645)
Q Consensus       420 ~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~--------~~~-------~~~~~~~~i~~v~~sp~~~~l~t~s~dg~  484 (645)
                      .+.+..+.+.....+++++.||.+.+|+.....        ..+       ....|...+++++|+|++++||||+.||.
T Consensus       195 ~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~  274 (342)
T d1yfqa_         195 QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             ceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE
Confidence            566666666555799999999999999854211        111       11235667899999999999999999999


Q ss_pred             EEEEeCCCCCc
Q 006424          485 VYVWNYDELCF  495 (645)
Q Consensus       485 I~iwd~~~~~~  495 (645)
                      |++||+++++.
T Consensus       275 v~vWD~~~~~~  285 (342)
T d1yfqa_         275 ISCWNLQTRKK  285 (342)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCcE
Confidence            99999998753

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-28  Score=254.96  Aligned_cols=257  Identities=13%  Similarity=0.185  Sum_probs=181.8

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      ....++|.+.|+++++++  ++|+|||.|++|+|||..+.+...                                    
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~------------------------------------   48 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN------------------------------------   48 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC------------------------------------
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCc------------------------------------
Confidence            345689999999999875  699999999999999976532110                                    


Q ss_pred             eeccCCCceeeccCccCeEEE------EEcCC-C-eEEEEeCCCcEEEEecCCCeEE-----EEe------cCCCcEEEE
Q 006424          273 FQIEESPLQELHGHKGDVLDL------AWSNS-N-YLLSCSMDKTVRMWQVGCNQCL-----NVF------DHHNYVTCV  333 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l------~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~-----~~~------~~~~~v~~l  333 (645)
                         ..........|...+..+      ..+.. . .+++++.||.|++|++......     ...      .+...+..+
T Consensus        49 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (393)
T d1sq9a_          49 ---PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL  125 (393)
T ss_dssp             ---GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEE
T ss_pred             ---ccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEE
Confidence               000111222333333222      22222 2 6779999999999997543211     111      144567788


Q ss_pred             EEeeC----CCCEEEEEeCCCcEEEEeCCCCc------------EE-------EeeccCCCeEEEEEccCCCEEEEEecC
Q 006424          334 QFNPI----DDNYFISGSIDGKVRIWGVCEKR------------VV-------DWADVRDVISAICYIPDGKGFIVGSIT  390 (645)
Q Consensus       334 ~~~p~----~~~~l~s~s~dg~i~vwd~~~~~------------~~-------~~~~~~~~v~~l~~sp~g~~l~~g~~d  390 (645)
                      +|.+.    .+.++++++.||++++|++....            ..       ....+...+.+++|+|++ +|++|+.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~D  204 (393)
T d1sq9a_         126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN  204 (393)
T ss_dssp             EEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT
T ss_pred             EEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCC
Confidence            88762    14678999999999999974311            11       123345568999999998 89999999


Q ss_pred             CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC---eEEEEECCcce--eeEe---------
Q 006424          391 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS---KLRILDGVDVI--HKFK---------  456 (645)
Q Consensus       391 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg---~I~iwd~~~~~--~~~~---------  456 (645)
                      |.|++||+.+.... ...........|..+|.+++|+|+| .+|++|+.|+   .|++||+....  ..+.         
T Consensus       205 g~i~iwd~~~~~~~-~~~~~~~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~  282 (393)
T d1sq9a_         205 GTVQISELSTLRPL-YNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS  282 (393)
T ss_dssp             SEEEEEETTTTEEE-EEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred             CcEEEEeecccccc-cccccccccccccceEEEccccccc-ceeeeecCCCCcceeeecccccceeeeeeccccccccce
Confidence            99999999877643 3333333345577899999999998 8999999886   59999976432  2221         


Q ss_pred             --ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          457 --GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       457 --~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                        ...|...|++++|+|++++|++||.|++|++||+.++
T Consensus       283 ~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         283 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             -CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             eeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence              1358889999999999999999999999999999887

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.4e-29  Score=249.39  Aligned_cols=244  Identities=15%  Similarity=0.174  Sum_probs=186.7

Q ss_pred             cEEEEEECCCCCEEEEEeCCC-cEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          202 CIWTLKFSPDGRYLASGGEDG-VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      .+++++|+|+|+.|+.++.+. .|+.|+....                                           .....
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~-------------------------------------------~~~~~   55 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDS-------------------------------------------KVPPV   55 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCC-------------------------------------------SSCSE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCC-------------------------------------------Cccce
Confidence            467899999999999887654 2455554321                                           13445


Q ss_pred             eeeccCc-cCeEEEEEcCC--C-eEEEEeCCCcEEEEecCCCeEEE--------Ee-cCCCcEEEEEEeeCCCCEEEEEe
Q 006424          281 QELHGHK-GDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCLN--------VF-DHHNYVTCVQFNPIDDNYFISGS  347 (645)
Q Consensus       281 ~~l~~h~-~~V~~l~~s~~--~-~l~s~s~dg~I~iwd~~~~~~~~--------~~-~~~~~v~~l~~~p~~~~~l~s~s  347 (645)
                      ..+.+|. ..|++++|+|+  + +|++|+.||+|++||+..++...        .+ .|..+|.+++|++ ++.++++++
T Consensus        56 ~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~  134 (325)
T d1pgua1          56 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVG  134 (325)
T ss_dssp             EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             EEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceee
Confidence            6777774 68999999974  4 88899999999999986543221        11 3778999999999 899888776


Q ss_pred             C--CCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCE-EEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEE
Q 006424          348 I--DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG  423 (645)
Q Consensus       348 ~--dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (645)
                      .  ++.+++|+..+++.+. +.+|...|.+++|+|++.+ +++++.||.+++||....+......    ....+...|++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~----~~~~~~~~v~~  210 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR----THHKQGSFVRD  210 (325)
T ss_dssp             CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC----SSSCTTCCEEE
T ss_pred             ccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecc----cccCCCCccEE
Confidence            4  6789999999877654 6678999999999998875 6778999999999987655433221    12345678999


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEe---cCCCEEEEEeCCccEEEEeCCCC
Q 006424          424 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFT---TTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       424 i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~s---p~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ++|+|++..++++++.|+.|++||.++.........|...+.++.|+   |++++|++++.|+.|+|||+.++
T Consensus       211 v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         211 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             eeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence            99999866899999999999999987554444433455555555554   78999999999999999999866

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.5e-28  Score=243.97  Aligned_cols=256  Identities=18%  Similarity=0.252  Sum_probs=191.3

Q ss_pred             ccccccc-cCcEEEEEECC--CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecC
Q 006424          193 SQEIQAH-KGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP  269 (645)
Q Consensus       193 ~~~l~~H-~~~V~~l~fsp--dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (645)
                      ...+.+| ...|++++|+|  +|++||+|+.||+|+|||+........                                
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~--------------------------------  102 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS--------------------------------  102 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE--------------------------------
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceee--------------------------------
Confidence            3445677 46899999998  568999999999999999875322110                                


Q ss_pred             CCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEe--CCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEE
Q 006424          270 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       270 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s--~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s  345 (645)
                           ........+..|.++|.+++|++++ ++++++  .++.+++|+.++++.+..+. |...|.+++|+|....++++
T Consensus       103 -----~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1         103 -----VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             -----EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             -----eecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence                 0111223456789999999999997 666655  46789999999999888875 89999999999944446888


Q ss_pred             EeCCCcEEEEeCCCCcEEE----eeccCCCeEEEEEccC-CCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCC
Q 006424          346 GSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK  420 (645)
Q Consensus       346 ~s~dg~i~vwd~~~~~~~~----~~~~~~~v~~l~~sp~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  420 (645)
                      ++.|+.+++||....+...    ...+...|++++|+|+ +.++++++.||.|++||+++......   +..+...+...
T Consensus       178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~---l~~~~~~v~~~  254 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY---IEDDQEPVQGG  254 (325)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE---CCBTTBCCCSC
T ss_pred             eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccc---ccccccccccc
Confidence            9999999999998866544    3456778999999996 68899999999999999987765322   23332233344


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEecC-CCEEEEEeCCccEEEEeC
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp~-~~~l~t~s~dg~I~iwd~  490 (645)
                      +.++.|. +| .+|++++.|+.|+|||+..  ....+..+.+...+..+++.+. +.+|++++.||.|++||+
T Consensus       255 ~~s~~~~-dg-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         255 IFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             eeeeecc-CC-CEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            5555554 55 7999999999999999874  4455555545444444444433 358899999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.6e-28  Score=245.06  Aligned_cols=311  Identities=18%  Similarity=0.251  Sum_probs=221.0

Q ss_pred             hhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccchhHh
Q 006424           98 ELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEV  177 (645)
Q Consensus        98 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (645)
                      +|+||...|.. ++.++++. +++.+.            |++++.|          +                       
T Consensus         7 tL~GH~~~vit-c~~~~~~~-l~tgs~------------Dg~i~vW----------d-----------------------   39 (355)
T d1nexb2           7 TLRGHMTSVIT-CLQFEDNY-VITGAD------------DKMIRVY----------D-----------------------   39 (355)
T ss_dssp             EEECCSSSCEE-EEEEETTE-EEEEET------------TTEEEEE----------E-----------------------
T ss_pred             EECCcCCCcEE-EEEECCCE-EEEEeC------------CCeEEEE----------E-----------------------
Confidence            68999998753 45566665 777777            7766666          0                       


Q ss_pred             hhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEec
Q 006424          178 KQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG  257 (645)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (645)
                               .......++|++|.+.|++++|+|+ .+|++|+.||+|++|+.........                    
T Consensus        40 ---------~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~--------------------   89 (355)
T d1nexb2          40 ---------SINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHV--------------------   89 (355)
T ss_dssp             ---------TTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEE--------------------
T ss_pred             ---------CCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccc--------------------
Confidence                     0011245668899999999999986 5899999999999999987332111                    


Q ss_pred             ccCCCcceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-----------
Q 006424          258 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----------  325 (645)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-----------  325 (645)
                                             .....+........+++++ .+++++.|+.|++||+.+........           
T Consensus        90 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d1nexb2          90 -----------------------FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT  146 (355)
T ss_dssp             -----------------------ECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESC
T ss_pred             -----------------------cccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceec
Confidence                                   1111233445556667776 89999999999999998765433221           


Q ss_pred             -------------CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCC
Q 006424          326 -------------HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITG  391 (645)
Q Consensus       326 -------------~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg  391 (645)
                                   |...+.  .+.+ ++++++++..|+.|++||+++++... ...+...+.++.|+|++.++++++.||
T Consensus       147 ~~~~~~~~~~~~~~~~~v~--~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  223 (355)
T d1nexb2         147 PEENPYFVGVLRGHMASVR--TVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT  223 (355)
T ss_dssp             TTTCTTEEEEEECCSSCEE--EEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             cccccceeeeeeecccccc--cccc-ccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccc
Confidence                         222233  3445 78899999999999999999887665 556788899999999999999999999


Q ss_pred             eEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEE-EEe
Q 006424          392 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSA-SFT  470 (645)
Q Consensus       392 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v-~~s  470 (645)
                      .|++||+.+......   +.    .|...|.++.+++   .++++++.||.|++||+.+....+..+  ...+.++ .++
T Consensus       224 ~i~i~d~~~~~~~~~---~~----~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~  291 (355)
T d1nexb2         224 TIRIWDLENGELMYT---LQ----GHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFY  291 (355)
T ss_dssp             CEEEEETTTCCEEEE---EC----CCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEEEE--CTTCCCCCEEE
T ss_pred             eEEeeeccccccccc---cc----ccccccccccccc---ceeeeeecccccccccccccceecccc--cCCceEEEEEc
Confidence            999999988765332   22    2457899999975   489999999999999999877777763  3444444 567


Q ss_pred             cCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCC
Q 006424          471 TTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS  534 (645)
Q Consensus       471 p~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~  534 (645)
                      ++++++++|+ ||.|++||+++++.....         ...+.+.+.+++|+|+. .+++.+.|
T Consensus       292 ~~~~~l~~g~-d~~i~vwd~~tg~~~~~~---------~~~~~~~V~~v~~~~~~-~~~~~s~d  344 (355)
T d1nexb2         292 VSDNILVSGS-ENQFNIYNLRSGKLVHAN---------ILKDADQIWSVNFKGKT-LVAAVEKD  344 (355)
T ss_dssp             ECSSEEEEEE-TTEEEEEETTTCCBCCSC---------TTTTCSEEEEEEEETTE-EEEEEESS
T ss_pred             CCCCEEEEEe-CCEEEEEECCCCCEEEEE---------ecCCCCCEEEEEEcCCe-EEEEEECC
Confidence            7887777665 899999999988543221         11234567788888764 34444444

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.5e-27  Score=228.82  Aligned_cols=237  Identities=19%  Similarity=0.285  Sum_probs=185.7

Q ss_pred             ccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      ++.+.+|...|+|++|  ||++||||+.||+|+|||+.+                                         
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~-----------------------------------------   44 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT-----------------------------------------   44 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS-----------------------------------------
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCC-----------------------------------------
Confidence            4446678999999765  789999999999999999987                                         


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV  352 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i  352 (645)
                          .+.+..+.+|.+.|++++|++ .+|++|+.|+.|++|++..+.............. .+.+ ....++++..++.+
T Consensus        45 ----~~~~~~l~~H~~~V~~v~~~~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~  117 (293)
T d1p22a2          45 ----LECKRILTGHTGSVLCLQYDE-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLRF-NNGMMVTCSKDRSI  117 (293)
T ss_dssp             ----CCEEEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEEC-CTTEEEEEETTSCE
T ss_pred             ----CcEEEEEecCCCCEeeeeccc-ceeecccccccccccccccccccccccccccccc-cccc-cccceeecccccce
Confidence                556788999999999999853 5899999999999999999888777654443333 3344 57789999999999


Q ss_pred             EEEeCCCCc----EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006424          353 RIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR  428 (645)
Q Consensus       353 ~vwd~~~~~----~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~  428 (645)
                      .+||.....    ......+...+..+.+.  ...+++++.|+.+++||+++...... +  ..    +...+..+.+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~-~--~~----~~~~v~~~~~~~  188 (293)
T d1p22a2         118 AVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRT-L--NG----HKRGIACLQYRD  188 (293)
T ss_dssp             EEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEE-E--EC----CSSCEEEEEEET
T ss_pred             eEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEE-E--cc----cccccccccCCC
Confidence            999988754    23355677778777665  45788999999999999988765332 2  22    235677777654


Q ss_pred             CCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          429 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       429 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                         ..+++++.|+.|++||.+..........+...+..  +++++.+|++|+.||.|++||+...
T Consensus       189 ---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         189 ---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             ---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             ---CeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCC
Confidence               58999999999999998866555555556666654  5678899999999999999998754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5e-27  Score=231.43  Aligned_cols=263  Identities=17%  Similarity=0.227  Sum_probs=191.0

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCce------eeeEecCCCCcccCCCCceEEecccCCCcce
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA------SCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP  265 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (645)
                      +.++|+||.++|++++|+|    |+||+.||+|++||+.++..      ....+.++..+.....++.+.+         
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~---------   71 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKV---------   71 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEE---------
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeecccccc---------
Confidence            5778999999999999998    99999999999999876321      1111111111111111111111         


Q ss_pred             eecCCCceeccCCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEE
Q 006424          266 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS  345 (645)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s  345 (645)
                             |+.     .. ..+...+.++++++++.++..+.++.+.+|+..+++.+..+.+...+.  +++| +++.+++
T Consensus        72 -------w~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~v  135 (287)
T d1pgua2          72 -------NGI-----TK-HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS--AVSL-SQNYVAV  135 (287)
T ss_dssp             -------TTE-----EE-EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE--EEEE-CSSEEEE
T ss_pred             -------ccc-----cc-cccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceee--eeec-cCcceee
Confidence                   111     11 123445777888888866667777788889888888888887666554  4566 6777777


Q ss_pred             EeCCC-cEEEEeCCCCcEEE--eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424          346 GSIDG-KVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       346 ~s~dg-~i~vwd~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                      ++.++ .+++|++.......  ...+...+++++|+|++.+|++|+.||.|++||+.+.......      ...|..+|.
T Consensus       136 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~------~~~h~~~v~  209 (287)
T d1pgua2         136 GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR------WAFRTSKIN  209 (287)
T ss_dssp             EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC------SCCCSSCEE
T ss_pred             eccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc------ccccccccc
Confidence            77765 79999997765443  2346788999999999999999999999999999877653221      233468899


Q ss_pred             EEEEcCCC---------CcEEEEEECCCeEEEEECCcceeeEe-ecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          423 GIQFSRDE---------SQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       423 ~i~~s~~g---------~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                      +++|+|.+         ..++++|+.|+.|++||+.+....+. ...|...|++++|+|++ .|++++.||+|++|++
T Consensus       210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99998753         26899999999999999875333333 34588999999999986 6889999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.5e-27  Score=234.71  Aligned_cols=321  Identities=17%  Similarity=0.253  Sum_probs=218.5

Q ss_pred             hhhhhhcccccceEEeeeccccCCccccccccCCCCcccccChHhHHHHHHHHHHhhcccchhhccccCCCCCCCCccch
Q 006424           95 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANK  174 (645)
Q Consensus        95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (645)
                      ....|+||.+.|.. ++.++++. +++++.            |+.++.|          +                    
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~-l~sgs~------------Dg~i~vW----------d--------------------   43 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNR-IVSGSD------------DNTLKVW----------S--------------------   43 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTE-EEEEET------------TSCEEEE----------E--------------------
T ss_pred             cCEEECCcCCceEE-EEEECCCE-EEEEeC------------CCeEEEE----------E--------------------
Confidence            44578999999865 56667766 788877            7777666          0                    


Q ss_pred             hHhhhcccccccccccccccccccccCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceE
Q 006424          175 MEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI  254 (645)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (645)
                                  .......+++.+|.+.|++++|+|+  +|++|+.|+.+++|+..........................
T Consensus        44 ------------~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (342)
T d2ovrb2          44 ------------AVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR  109 (342)
T ss_dssp             ------------TTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTE
T ss_pred             ------------CCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeeccccc
Confidence                        0001144668899999999999875  99999999999999988755443332222111110000000


Q ss_pred             EecccCCCcceeecCCCceecc-CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEE
Q 006424          255 KFGKKKSSHVPVVIPDEVFQIE-ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTC  332 (645)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~  332 (645)
                      ..........      .+++.. ......+..+... ..........+++++.|+.|++||....+.+..+. |...+.+
T Consensus       110 ~~~~~~d~~i------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  182 (342)
T d2ovrb2         110 VVSGSRDATL------RVWDIETGQCLHVLMGHVAA-VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS  182 (342)
T ss_dssp             EEEEETTSEE------EEEESSSCCEEEEEECCSSC-EEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE
T ss_pred             ccccccceeE------EEeecccccceeeeeccccc-ceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccc
Confidence            0000000000      011111 1222223222222 22233334589999999999999999998888775 6666555


Q ss_pred             EEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE-eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeec
Q 006424          333 VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH  411 (645)
Q Consensus       333 l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  411 (645)
                      +.+   ++.++++|+.||.|++||++.++.+. ...|...+.++.++  +++|++|+.||.|++||+.........   .
T Consensus       183 ~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~---~  254 (342)
T d2ovrb2         183 LQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTL---Q  254 (342)
T ss_dssp             EEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE---C
T ss_pred             ccC---CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccc---c
Confidence            544   78899999999999999999887665 66778888887765  569999999999999999877653321   1


Q ss_pred             cccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc--eeeEee---cCCCCCeEEEEEecCCCEEEEEeCCcc--
Q 006424          412 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKG---LPKSGSQMSASFTTTGKHIISIGDDCR--  484 (645)
Q Consensus       412 ~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~---~~~~~~i~~v~~sp~~~~l~t~s~dg~--  484 (645)
                       ....|...+.++.+++   .++++++.||.|++||+++.  ...+..   ..|...|++++|+|++.+|++|+.||+  
T Consensus       255 -~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~  330 (342)
T d2ovrb2         255 -GPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE  330 (342)
T ss_dssp             -STTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSC
T ss_pred             -ccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCe
Confidence             1223456777777765   48999999999999998743  333332   236678999999999999999999985  


Q ss_pred             --EEEEeCCC
Q 006424          485 --VYVWNYDE  492 (645)
Q Consensus       485 --I~iwd~~~  492 (645)
                        |++||++.
T Consensus       331 ~~l~~~Df~~  340 (342)
T d2ovrb2         331 TKLLVLDFDV  340 (342)
T ss_dssp             CEEEEEECCC
T ss_pred             eEEEEEeCCC
Confidence              99999874

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.1e-27  Score=236.17  Aligned_cols=280  Identities=14%  Similarity=0.183  Sum_probs=200.5

Q ss_pred             CCCceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424          277 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  356 (645)
Q Consensus       277 ~~~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd  356 (645)
                      .++++++.||..+|++++|+|   |+||+.||+|++||+.++.    ..|...|.++++++  +..+++++.|+++++|+
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~---l~sgs~Dg~v~~Wd~~~~~----~~h~~~V~~~~~~~--~~~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMH----QDHSNLIVSLDNSK--AQEYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT---TEEEETTSCEEETTTTEEE----CCCCSCEEEEECCS--TTCCEEEETTTEEEETT
T ss_pred             cceeEEECCCCCceEEEEECc---EEEEeCCCeEEEEECCCCC----CCCCCCEEEEEecC--CCeEEEEeecccccccc
Confidence            456889999999999999987   9999999999999987543    36889999999986  45689999999999999


Q ss_pred             CCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          357 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       357 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      +...      .....+..+.+++++..++++ .++.+.+|+........ .....       ..+  .++++++ ..+++
T Consensus        74 ~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-------~~~--~~~~~~~-~~~~v  135 (287)
T d1pgua2          74 ITKH------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIK-SVRLN-------SPG--SAVSLSQ-NYVAV  135 (287)
T ss_dssp             EEEE------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEE-EEECS-------SCE--EEEEECS-SEEEE
T ss_pred             cccc------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeee-ecccc-------cee--eeeeccC-cceee
Confidence            7542      234567788898888666654 56678889887766432 22211       233  4456665 56666


Q ss_pred             EECC-CeEEEEECCcceeeEee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCC
Q 006424          437 TSED-SKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG  514 (645)
Q Consensus       437 ~s~d-g~I~iwd~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g  514 (645)
                      ++.+ +.+++|+.......... ..+...+++++|+|++++|++|+.||.|++||+.++......         ...+.+
T Consensus       136 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---------~~~h~~  206 (287)
T d1pgua2         136 GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR---------WAFRTS  206 (287)
T ss_dssp             EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC---------SCCCSS
T ss_pred             eccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc---------cccccc
Confidence            6665 57999998754444433 346778999999999999999999999999999876422111         112456


Q ss_pred             cEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCc
Q 006424          515 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYC  594 (645)
Q Consensus       515 ~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~  594 (645)
                      .+..++|+|.+....                                 .+.+++.++++++. |++|++||+....    
T Consensus       207 ~v~~~~~~p~~~~~~---------------------------------~~~~~~~~l~sgs~-D~~i~iw~~~~~~----  248 (287)
T d1pgua2         207 KINAISWKPAEKGAN---------------------------------EEEIEEDLVATGSL-DTNIFIYSVKRPM----  248 (287)
T ss_dssp             CEEEEEECCCC---------------------------------------CCSCCEEEEEET-TSCEEEEESSCTT----
T ss_pred             ccceeeecccccccc---------------------------------cccCCCCeeEeecC-CCeEEEEECCCCC----
Confidence            688899998876433                                 24456778888888 9999999987642    


Q ss_pred             CChhhhHhhhhhccCCCCC--ccCCCCcceEEEEecCCCeEeEEEe
Q 006424          595 QDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHN  638 (645)
Q Consensus       595 ~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~ivt~s~Dg~Iriw~~  638 (645)
                            ........|...+  +.+++ ++ .|+|+|.||+||+|++
T Consensus       249 ------~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         249 ------KIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ------CCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred             ------eEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence                  1111122333333  33443 44 5999999999999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.4e-27  Score=239.63  Aligned_cols=312  Identities=13%  Similarity=0.053  Sum_probs=216.6

Q ss_pred             ceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCe----EEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          280 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       280 ~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~----~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      ++..++|++.|++|+|+|++ +|++|+.||+|+|||++++.    ....++|..+|.+++|+|.++.+|++|+.|+.|++
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            56678999999999999987 99999999999999997553    33445699999999999955668999999999999


Q ss_pred             EeCCCCcEEEee--ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006424          355 WGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       355 wd~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~  432 (645)
                      |++.........  .+........+.+++..+++++.++.+++||++............. ............+.+.+ .
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~  161 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SNNTKVKNKIFTMDTNS-S  161 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC-SSSSSSCCCEEEEEECS-S
T ss_pred             eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccc-cccccceeeeeeeeccC-C
Confidence            999876654432  2333445566677888999999999999999875544332221111 11112334455666665 7


Q ss_pred             EEEEEECCCeEEEEECCcce---eeEeecCCCCCeEEEEEe-cCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceee
Q 006424          433 RIMITSEDSKLRILDGVDVI---HKFKGLPKSGSQMSASFT-TTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE  508 (645)
Q Consensus       433 ~l~~~s~dg~I~iwd~~~~~---~~~~~~~~~~~i~~v~~s-p~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  508 (645)
                      .+++++.|+.|++||+....   ...........+.+..+. .++..+++++.||.+.+|++.............     
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~-----  236 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF-----  236 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE-----
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccc-----
Confidence            89999999999999976321   222223344455555554 567899999999999999987653222111100     


Q ss_pred             eeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCcc
Q 006424          509 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI  588 (645)
Q Consensus       509 ~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~  588 (645)
                             . ...+                         ........+...+.+++|+|++.++++++. ||.|++||+.+
T Consensus       237 -------~-~~~~-------------------------~~~~~~~~~~~~v~~l~~sp~~~~lasg~~-Dg~v~vWD~~~  282 (342)
T d1yfqa_         237 -------A-FRCH-------------------------RLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-DGIISCWNLQT  282 (342)
T ss_dssp             -------E-EECC-------------------------CCCTTCCSSCCCEEEEEECTTTCCEEEEET-TSCEEEEETTT
T ss_pred             -------e-eeee-------------------------eeccCCCcccccceeEEecCCccEEEEECC-CCEEEEEECCC
Confidence                   0 0000                         000012234455778899999999999998 99999999988


Q ss_pred             CCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEecCccc
Q 006424          589 DSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNYGLPI  643 (645)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~g~~~  643 (645)
                      +.          ++......+.....++++ +|..+++|+.|+++++|..++..+
T Consensus       283 ~~----------~l~~~~~~~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~~~~~~  326 (342)
T d1yfqa_         283 RK----------KIKNFAKFNEDSVVKIAC-SDNILCLATSDDTFKTNAAIDQTI  326 (342)
T ss_dssp             TE----------EEEECCCCSSSEEEEEEE-CSSEEEEEEECTHHHHCSSSCTTS
T ss_pred             Cc----------EEEEecCCCCCEEEEEEe-CCCEEEEEEcCCcEEEeeeeCCCc
Confidence            72          122222234444566666 588899999999999998877654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-25  Score=218.82  Aligned_cols=286  Identities=14%  Similarity=0.189  Sum_probs=201.5

Q ss_pred             CceeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424          279 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV  357 (645)
Q Consensus       279 ~~~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~  357 (645)
                      .+.....|...|+|++|+ +++|+||+.||+|+|||+.+++++..+. |...|++++|   ++++|++|+.|+.|++|++
T Consensus         7 ~i~~~~~~~~~V~c~~~d-~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~---~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQYD-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CEECCCSSCCCEEEEECC-SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEES
T ss_pred             EEeccCCCCCCEEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec---ccceeeccccccccccccc
Confidence            345566788999998773 3499999999999999999999999886 8999999987   5689999999999999999


Q ss_pred             CCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006424          358 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT  437 (645)
Q Consensus       358 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~  437 (645)
                      ..+............. ..+.+....++++..++.+.+|+...............    +...+..+.+.+.   .++++
T Consensus        83 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~---~~~~~  154 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAV-LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG----HRAAVNVVDFDDK---YIVSA  154 (293)
T ss_dssp             SSCCEEEEECCCCSCE-EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC----CSSCEEEEEEETT---EEEEE
T ss_pred             cccccccccccccccc-ccccccccceeecccccceeEeeccccccccccccccc----cccccccceeccc---ccccc
Confidence            9988776554443333 34456677899999999999999987665443333222    3467777777654   68899


Q ss_pred             ECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEE
Q 006424          438 SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSV  517 (645)
Q Consensus       438 s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~  517 (645)
                      +.|+.|++||............+...+..+.++  +.++++++.||.|++||+.+......          ...+...+ 
T Consensus       155 s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~----------~~~~~~~v-  221 (293)
T d1p22a2         155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV----------LEGHEELV-  221 (293)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE----------ECCCSSCE-
T ss_pred             cCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeee----------ecccceee-
Confidence            999999999988655444444467777777664  67899999999999999986521100          00001111 


Q ss_pred             EEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCCh
Q 006424          518 AVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDP  597 (645)
Q Consensus       518 ~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~  597 (645)
                                                                  ..+++++.++++++. |+.|++||+.......... 
T Consensus       222 --------------------------------------------~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~-  255 (293)
T d1p22a2         222 --------------------------------------------RCIRFDNKRIVSGAY-DGKIKVWDLVAALDPRAPA-  255 (293)
T ss_dssp             --------------------------------------------EEEECCSSEEEEEET-TSCEEEEEHHHHTSTTSCT-
T ss_pred             --------------------------------------------eeccccceEEEEEcC-CCEEEEEECCCCccccccC-
Confidence                                                        123455566666666 8899999876652111110 


Q ss_pred             hhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEE
Q 006424          598 QQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH  637 (645)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~  637 (645)
                       ..........|.+.+.+++. |+.+|+|||.||+|++||
T Consensus       256 -~~~~~~~~~~H~~~V~~v~~-d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         256 -GTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             -TTTEEEEECCCSSCCCCEEE-CSSCEEECCSSSEEEEEC
T ss_pred             -CceeeEEecCCCCCEEEEEE-cCCEEEEEecCCEEEEeC
Confidence             01111222334444444444 678899999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=5.5e-27  Score=238.41  Aligned_cols=318  Identities=11%  Similarity=-0.036  Sum_probs=218.4

Q ss_pred             EEEEcC-CC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCcEEEeec
Q 006424          292 DLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVDWAD  367 (645)
Q Consensus       292 ~l~~s~-~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~  367 (645)
                      .-.||| || +++++ .+|.|++||+..+...+ +.|...|.+++|+| +++.|++++.+.  .|++||+.+++...+..
T Consensus         7 ~~~fSP~dG~~~a~~-~~g~v~v~d~~~~~~~~-~~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~   83 (360)
T d1k32a3           7 AEDFSPLDGDLIAFV-SRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAEKFEE   83 (360)
T ss_dssp             EEEEEECGGGCEEEE-ETTEEEEECTTSSBEEE-CSCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred             cccccCCCCCEEEEE-ECCeEEEEECCCCcEEE-ccCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEEEeeC
Confidence            356898 78 55555 46899999999887765 57899999999999 999988776553  79999999999999999


Q ss_pred             cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE---------
Q 006424          368 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS---------  438 (645)
Q Consensus       368 ~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s---------  438 (645)
                      |...+.+++|+|+|++|++++.++.+++|++.+...... ...      +...+.+++|+|+| ++|+.+.         
T Consensus        84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~spdg-~~la~~~~~~~~~~~~  155 (360)
T d1k32a3          84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI-ERS------REAMITDFTISDNS-RFIAYGFPLKHGETDG  155 (360)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EEC------SSSCCCCEEECTTS-CEEEEEEEECSSTTCS
T ss_pred             CCceEEeeeecccccccceeccccccccccccccceeee-eec------ccccccchhhccce-eeeeeeccccccceee
Confidence            999999999999999999999999999999988765322 211      23678899999998 6776543         


Q ss_pred             -CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEE
Q 006424          439 -EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSV  517 (645)
Q Consensus       439 -~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~  517 (645)
                       .++.+++||...... .....+...+..+.|+|+|++|++++.|+.+.+|+............  ......++. +...
T Consensus       156 ~~~~~~~v~d~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~-~~~~  231 (360)
T d1k32a3         156 YVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS--KPFVIPLIP-GSPN  231 (360)
T ss_dssp             CCEEEEEEEETTTTEE-EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCB--EEEEEESST-TCCC
T ss_pred             ccccceeeeccccCce-eeecccccccccccccCCCCEEEEEeCCCceEcccccccceeecccc--ceEEEeccc-Cccc
Confidence             345799999875433 23334667788999999999999999999999999765432211110  111112222 2223


Q ss_pred             EEecCCCCccccccCCCCccccCccccc--cccC-Ccc---CCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCC
Q 006424          518 AVQWPGIGTEQKSLCSSSLRDCSQKWDN--LETA-PWI---RDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSD  591 (645)
Q Consensus       518 ~v~~s~~~~~l~~~~~~~~~~~~~~w~~--~~~~-~~~---~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~  591 (645)
                      .+.|++++..++....+........|..  .... ..+   .++...+....+++++.++++++. ++.|++||+.+++ 
T Consensus       232 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~-  309 (360)
T d1k32a3         232 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPE-KGVLLKYDVKTRK-  309 (360)
T ss_dssp             GGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCC-CEEEEEEETTTCC-
T ss_pred             cceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCC-CCEEEEEECCCCe-
Confidence            4566777766654433322211122211  1100 011   122223334445555557777777 8899999998872 


Q ss_pred             CCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEec
Q 006424          592 GYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~~  639 (645)
                                .  ..+......++|++ ||++|++++.||+|++|++.
T Consensus       310 ----------~--~~~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         310 ----------V--TEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLE  344 (360)
T ss_dssp             ----------E--EEEEEEEEEEEECT-TSCEEEEEETTSCEEEEESS
T ss_pred             ----------E--EEecCCcCEEEECC-CCCEEEEEECCCeEEEEECC
Confidence                      1  11111223355666 89999999999999999964

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=4.5e-26  Score=231.60  Aligned_cols=316  Identities=11%  Similarity=0.017  Sum_probs=221.8

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceee
Q 006424          205 TLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL  283 (645)
Q Consensus       205 ~l~fsp-dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  283 (645)
                      .-.||| ||+++|+++. |.|++||+.++                                             . ...+
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~---------------------------------------------~-~~~~   39 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGT---------------------------------------------Y-VLKV   39 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSS---------------------------------------------B-EEEC
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCC---------------------------------------------c-EEEc
Confidence            467999 9999999874 78999998762                                             1 2233


Q ss_pred             ccCccCeEEEEEcCCC-eEEEEeCC--CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006424          284 HGHKGDVLDLAWSNSN-YLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK  360 (645)
Q Consensus       284 ~~h~~~V~~l~~s~~~-~l~s~s~d--g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~  360 (645)
                       +|...|.+++|+|+| .|++++.+  ..|++||.++++......|...|.+++|+| ++++|++++.++.+++|++.++
T Consensus        40 -~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          40 -PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             -SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTC
T ss_pred             -cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecc-cccccceecccccccccccccc
Confidence             689999999999998 66666544  379999999998888888999999999999 9999999999999999999998


Q ss_pred             cEEE-eeccCCCeEEEEEccCCCEEEEEe----------cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          361 RVVD-WADVRDVISAICYIPDGKGFIVGS----------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       361 ~~~~-~~~~~~~v~~l~~sp~g~~l~~g~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      +... ...+...+.+++|+|+|++|+.+.          .++.+++||+.+......    .    .+...+..+.|+|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~----~----~~~~~~~~~~~spd  189 (360)
T d1k32a3         118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA----T----TENSHDYAPAFDAD  189 (360)
T ss_dssp             CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC----S----CSSSBEEEEEECTT
T ss_pred             ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee----c----ccccccccccccCC
Confidence            8765 456777899999999999998754          344689999987654221    1    12367888999999


Q ss_pred             CCcEEEEEECCCeEEEEECCccee-------eEeecCCCCCeEEEEEecCCCEEEEEeCCc---cEEEEeCCCCCcCCCc
Q 006424          430 ESQRIMITSEDSKLRILDGVDVIH-------KFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYDELCFPSSK  499 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~~-------~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg---~I~iwd~~~~~~~~~~  499 (645)
                      | ++|++++.++.+.+||......       ......+...+..+.|++++..++++..+.   ..++|.+...      
T Consensus       190 g-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~------  262 (360)
T d1k32a3         190 S-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD------  262 (360)
T ss_dssp             S-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC------
T ss_pred             C-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccC------
Confidence            8 7999999999999999653221       111122444455566777777766654332   1223332211      


Q ss_pred             ccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCC
Q 006424          500 QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAE  579 (645)
Q Consensus       500 ~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~  579 (645)
                        ......+..+ ++....+.+...+..............+.+|+.....  ...+...+.+++|||||++|++++. ||
T Consensus       263 --~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~v~~~~~SpDG~~l~~~~~-Dg  336 (360)
T d1k32a3         263 --PGDYRMIIPL-ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK--VTEVKNNLTDLRLSADRKTVMVRKD-DG  336 (360)
T ss_dssp             --CBCEEEEEEC-SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC--EEEEEEEEEEEEECTTSCEEEEEET-TS
T ss_pred             --cCceeEeeec-CCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe--EEEecCCcCEEEECCCCCEEEEEEC-CC
Confidence              0011122222 3444556666555433322222233445667653322  2334456788999999999999988 99


Q ss_pred             cCCCCCCccCC
Q 006424          580 KLPLWDVTIDS  590 (645)
Q Consensus       580 ~i~iWd~~~~~  590 (645)
                      .|++||+.+++
T Consensus       337 ~i~v~d~~~~~  347 (360)
T d1k32a3         337 KIYTFPLEKPE  347 (360)
T ss_dssp             CEEEEESSCTT
T ss_pred             eEEEEECCCCC
Confidence            99999998873

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.4e-24  Score=224.36  Aligned_cols=265  Identities=16%  Similarity=0.212  Sum_probs=181.1

Q ss_pred             eeeccCccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCe-------EEEEecCCCcEEEEEE------eeCCCCEEEEEe
Q 006424          281 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-------CLNVFDHHNYVTCVQF------NPIDDNYFISGS  347 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~-------~~~~~~~~~~v~~l~~------~p~~~~~l~s~s  347 (645)
                      ...++|.+.|.++++++ ++++|||.|++|++||..+.+       ......|...+..+..      ++.+..++++++
T Consensus         8 ~~~~~H~~~I~~v~~~~-~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             EESSCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC-CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            45679999999999875 689999999999999976543       2233334443332222      211234688999


Q ss_pred             CCCcEEEEeCCCCc----EEE-------eeccCCCeEEEEEccC-----CCEEEEEecCCeEEEEEecCCcee-------
Q 006424          348 IDGKVRIWGVCEKR----VVD-------WADVRDVISAICYIPD-----GKGFIVGSITGTCHFYKASGNDLK-------  404 (645)
Q Consensus       348 ~dg~i~vwd~~~~~----~~~-------~~~~~~~v~~l~~sp~-----g~~l~~g~~dg~i~iwd~~~~~~~-------  404 (645)
                      .||.|++|++....    ...       ...+...+..++|.++     +.++++++.||.+++|++......       
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            99999999875422    111       1224456777888775     468899999999999998532210       


Q ss_pred             ----eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeE--e----ecCCCCCeEEEEEecCCC
Q 006424          405 ----LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF--K----GLPKSGSQMSASFTTTGK  474 (645)
Q Consensus       405 ----~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~--~----~~~~~~~i~~v~~sp~~~  474 (645)
                          ............+...+.+++|+|++  ++++|+.|+.|++||+.+.....  .    ...|..+|.+++|+|+|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence                01111122233345678999999996  89999999999999987543322  2    234788999999999999


Q ss_pred             EEEEEeCCc---cEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCc
Q 006424          475 HIISIGDDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPW  551 (645)
Q Consensus       475 ~l~t~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~  551 (645)
                      +|++|+.|+   .|++||+.++....                    .+.....                    .......
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~--------------------~l~~~~~--------------------~~~~~~~  284 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIG--------------------SLSVPTH--------------------SSQASLG  284 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEE--------------------EECBC----------------------------C
T ss_pred             eeeeecCCCCcceeeecccccceeee--------------------eeccccc--------------------cccceee
Confidence            999999886   49999998763110                    0000000                    0011112


Q ss_pred             cCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccC
Q 006424          552 IRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID  589 (645)
Q Consensus       552 ~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~  589 (645)
                      ..+|...|++++|+|||++++|++. |++|++||+.++
T Consensus       285 ~~gH~~~V~~l~fspd~~~l~S~s~-D~~v~vWd~~~g  321 (393)
T d1sq9a_         285 EFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVKTK  321 (393)
T ss_dssp             CBSBSSCEEEEEECSSSSEEEEEET-TSEEEEEETTTT
T ss_pred             eecccCceeeeccCCCCCeeEEECC-CCEEEEEECCCC
Confidence            3457778889999999999999998 999999999887

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=6e-22  Score=206.55  Aligned_cols=338  Identities=12%  Similarity=-0.031  Sum_probs=221.1

Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEE
Q 006424          213 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  292 (645)
Q Consensus       213 ~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  292 (645)
                      -++++.+.||+|.|||..+                                             ++.+..+..| ..+..
T Consensus        33 ~~~v~~~d~g~v~v~D~~t---------------------------------------------~~v~~~~~~g-~~~~~   66 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGST---------------------------------------------YEIKTVLDTG-YAVHI   66 (432)
T ss_dssp             EEEEEETTTTEEEEEETTT---------------------------------------------CCEEEEEECS-SCEEE
T ss_pred             EEEEEEcCCCEEEEEECCC---------------------------------------------CcEEEEEeCC-CCeeE
Confidence            3468889999999999998                                             4556777766 36999


Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEecCCCeE--EEEec----CCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEeCCCCcEEE
Q 006424          293 LAWSNSN-YLLSCSMDKTVRMWQVGCNQC--LNVFD----HHNYVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVVD  364 (645)
Q Consensus       293 l~~s~~~-~l~s~s~dg~I~iwd~~~~~~--~~~~~----~~~~v~~l~~~p~~~~~l-~s~s~dg~i~vwd~~~~~~~~  364 (645)
                      ++|+||| ++++++.|++|++||+.+++.  +..+.    |.+.+.+..|+| |+++| ++++.++.|++||..++++..
T Consensus        67 v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~  145 (432)
T d1qksa2          67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKK  145 (432)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCC-CCCEEEEEcCCCCeEEEEeCcccccee
Confidence            9999998 889999999999999987763  33332    444556667788 88875 778889999999999988765


Q ss_pred             ee------------ccCCCeEEEEEccCCCEEEE-EecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006424          365 WA------------DVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES  431 (645)
Q Consensus       365 ~~------------~~~~~v~~l~~sp~g~~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~  431 (645)
                      ..            ........+.++|+|..+++ ...++.+.+||..+...... ..+..     +..+..+.|+|+|.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~-~~i~~-----g~~~~~~~~spdg~  219 (432)
T d1qksa2         146 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT-TEISA-----ERFLHDGGLDGSHR  219 (432)
T ss_dssp             EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE-EEEEC-----CSSEEEEEECTTSC
T ss_pred             eeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceE-EEEcc-----cCccccceECCCCC
Confidence            32            23455678899999987654 55679999999887654221 11221     35678999999984


Q ss_pred             cEEEEEECCCeEEEEECCcceeeEee-----cCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCCcCCCcccCCcc
Q 006424          432 QRIMITSEDSKLRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQKNSVR  505 (645)
Q Consensus       432 ~~l~~~s~dg~I~iwd~~~~~~~~~~-----~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~  505 (645)
                      .+++++..++.+.++|..........     ..+........+...+...++.. .++.|.+|+........  +. ...
T Consensus       220 ~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~--~~-~~v  296 (432)
T d1qksa2         220 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPD--NA-WKI  296 (432)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTT--TB-TSE
T ss_pred             EEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccc--cc-cEE
Confidence            44444455678999997744332221     12344445555555555555554 37899999876543211  11 112


Q ss_pred             eeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCC
Q 006424          506 SCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD  585 (645)
Q Consensus       506 ~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd  585 (645)
                      ....+.+++..++++.+|+...+|.....                  ..+.....++++ ||++.+++++. ++.+++|+
T Consensus       297 ~~~~~~~~g~~~~~~s~p~~~~lw~~~~~------------------~~~~~~~~sv~v-pDg~~la~~s~-d~~~k~w~  356 (432)
T d1qksa2         297 LDSFPALGGGSLFIKTHPNSQYLYVDATL------------------NPEAEISGSVAV-FDIKAMTGDGS-DPEFKTLP  356 (432)
T ss_dssp             EEEEECSCSCCCCEECCTTCSEEEEECTT------------------CSSHHHHTCEEE-EEGGGCCCSSS-CCCEEEEC
T ss_pred             EEEEEcCCCCeEEEEecCCccceeecccC------------------CCCCCeeeEEEE-Eechhhccccc-CCceEecc
Confidence            22344555555566666666666633221                  112223334444 99999999998 89999999


Q ss_pred             CccCCCCCcCChhhhHhhhhhccCCCCC--ccCCCCcceEEEEec-----CCCeEeEEEecCc
Q 006424          586 VTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAG-----CDGMIKTFHNYGL  641 (645)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~ivt~s-----~Dg~Iriw~~~g~  641 (645)
                      +.++             ... ..+...+  ..|++ ||+.|+.+.     .||.|+|||-.-+
T Consensus       357 ~~~~-------------~~l-~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~  404 (432)
T d1qksa2         357 IAEW-------------AGI-TEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTL  404 (432)
T ss_dssp             HHHH-------------HTC-CSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             cccc-------------ccc-CCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCc
Confidence            8654             111 1222222  34555 797664442     5789999985433

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=3e-21  Score=201.27  Aligned_cols=330  Identities=10%  Similarity=0.062  Sum_probs=210.6

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE------eeccCCCeE
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD------WADVRDVIS  373 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~------~~~~~~~v~  373 (645)
                      ++++.+.||+|++||+.+++.+..+.....+..++|+| ||+++++++.|++|++||+.+++...      ..++...+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            46788899999999999999999998777899999999 99999999999999999998876432      124455566


Q ss_pred             EEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEEeecc----ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEEC
Q 006424          374 AICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHD----RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG  448 (645)
Q Consensus       374 ~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~  448 (645)
                      ++.|+|||++++++ ..++.+.+||...............    ....+......+.+++++...+.+....+.+.+++.
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~  192 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  192 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence            77788999987655 5789999999988765433211110    111123455667788887444444555577777775


Q ss_pred             Cccee-eEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCCcCCCcc---cCCcceeeeee--cCCcEEEEec
Q 006424          449 VDVIH-KFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQ---KNSVRSCEHFF--SEGVSVAVQW  521 (645)
Q Consensus       449 ~~~~~-~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~--~~g~~~~v~~  521 (645)
                      ..... ......+...+..+.|+|++++++++. .+..+.+|+..++.......   .........+.  ..+.+.+...
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (426)
T d1hzua2         193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH  272 (426)
T ss_dssp             SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred             ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence            53221 122223667889999999999888776 46779999998875322111   11111222222  3345566666


Q ss_pred             CCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcC-------CCCCCCcCCCCCCccCCCCCc
Q 006424          522 PGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-------ATWPAEKLPLWDVTIDSDGYC  594 (645)
Q Consensus       522 s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s-------~s~~d~~i~iWd~~~~~~~~~  594 (645)
                      ++++...+....... .....|..   ...+.++...+.+++|+|||++++.       ++. +++|++||+.+++....
T Consensus       273 ~~d~~v~~~~~~~~~-~~~~~~~~---~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~-~~tv~vwd~~t~~~~~~  347 (426)
T d1hzua2         273 LGDGSISLIGTDPKN-HPQYAWKK---VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI-SQSVAVFDLKNLDAKYQ  347 (426)
T ss_dssp             TTTCEEEEEECCTTT-CTTTBTSE---EEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHH-HTCEEEEETTCTTSCCE
T ss_pred             CCCceEEEeeccccc-cccccceE---eEEEecCCCceeEEEcCCCCceEEEeecCCCCccc-CCEEEEEECCCCCcCeE
Confidence            667665443222211 11122222   2245567778899999999998873       333 57899999998842110


Q ss_pred             CChhhhHhhhhhc-cCCCCC--ccCCCCcceEE-EEe----cCCCeEeEEEec
Q 006424          595 QDPQQQRLQQQCL-NNVDDV--RAISATWGLVI-VTA----GCDGMIKTFHNY  639 (645)
Q Consensus       595 ~~~~~~~~~~~~~-~~~~~~--~~~~~~d~~~i-vt~----s~Dg~Iriw~~~  639 (645)
                      .   .+......+ .+...+  ..|++ ||+.| +++    +.||+|+|||..
T Consensus       348 ~---~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         348 V---LPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             E---ECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEETT
T ss_pred             E---eccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEECC
Confidence            0   011111111 111222  24555 78755 553    578999999844

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=4.1e-20  Score=192.55  Aligned_cols=326  Identities=12%  Similarity=0.016  Sum_probs=204.5

Q ss_pred             ECCCCC--EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeecc
Q 006424          208 FSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG  285 (645)
Q Consensus       208 fspdg~--~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  285 (645)
                      ++.|.+  ++++++.||+|+|||+.+                                             ++.+..+..
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t---------------------------------------------~~~~~~l~~   60 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDS---------------------------------------------KKIVKVIDT   60 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTT---------------------------------------------CSEEEEEEC
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCC---------------------------------------------CcEEEEEeC
Confidence            444433  567888999999999998                                             455677776


Q ss_pred             CccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEE--e----cCCCcEEEEEEeeCCCCEEE-EEeCCCcEEEEeC
Q 006424          286 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV--F----DHHNYVTCVQFNPIDDNYFI-SGSIDGKVRIWGV  357 (645)
Q Consensus       286 h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~--~----~~~~~v~~l~~~p~~~~~l~-s~s~dg~i~vwd~  357 (645)
                      |. .+..++|+||| ++++++.|++|++||+.+++....  +    +|...+.+++|+| ++++++ ++..++.+++||.
T Consensus        61 g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~  138 (426)
T d1hzua2          61 GY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDG  138 (426)
T ss_dssp             CS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEESSEEEEEET
T ss_pred             CC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC-CCCEEEEeecCCCeEEEEcC
Confidence            64 58999999998 888999999999999998875433  2    2555667778888 888765 4557899999999


Q ss_pred             CCCcEEEee-cc-----------CCCeEEEEEccCCCEEEEEecC-CeEEEEEecCCceeeeEEeeccccccCCCCeEEE
Q 006424          358 CEKRVVDWA-DV-----------RDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI  424 (645)
Q Consensus       358 ~~~~~~~~~-~~-----------~~~v~~l~~sp~g~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  424 (645)
                      .++.+.... .+           ......+.+++++..++....+ +.+.+++............      .+...+..+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~  212 (426)
T d1hzua2         139 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI------GAAPFLADG  212 (426)
T ss_dssp             TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE------ECCSSEEEE
T ss_pred             CccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe------ccCCccEee
Confidence            998766532 22           2334455666666655554433 4455555443332111111      124678899


Q ss_pred             EEcCCCCcEEEEEECCCeEEEEECCcceee--EeecCCCCCeEEEEEecCCC-EE--EEEeCCccEEEEeCCCCCcCCCc
Q 006424          425 QFSRDESQRIMITSEDSKLRILDGVDVIHK--FKGLPKSGSQMSASFTTTGK-HI--ISIGDDCRVYVWNYDELCFPSSK  499 (645)
Q Consensus       425 ~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~--~~~~~~~~~i~~v~~sp~~~-~l--~t~s~dg~I~iwd~~~~~~~~~~  499 (645)
                      .|+|++..++++...+..+.+++.......  ..............+...+. .+  ++.+.|+.+.+|+..........
T Consensus       213 ~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~  292 (426)
T d1hzua2         213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA  292 (426)
T ss_dssp             EECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTB
T ss_pred             eECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccccc
Confidence            999998555555566788999997754332  22222223333444444333 22  23346889999988765322211


Q ss_pred             ccCCcceeeeeecCCcEEEEecCCCCccccccC----CCCccccCccccccccCC-----------ccCCCCccccCccc
Q 006424          500 QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLC----SSSLRDCSQKWDNLETAP-----------WIRDSERFSLGSWF  564 (645)
Q Consensus       500 ~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~----~~~~~~~~~~w~~~~~~~-----------~~~~~~~~~~~~~f  564 (645)
                        ....... -.+...+.+++++|++..|+...    +......+.+|+......           ....+...+.+++|
T Consensus       293 --~~~~~~l-~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~f  369 (426)
T d1hzua2         293 --WKKVAEL-QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY  369 (426)
T ss_dssp             --TSEEEEE-ECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEE
T ss_pred             --ceEeEEE-ecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEE
Confidence              1111111 12334456788888888888432    222345577787633222           12244556778899


Q ss_pred             cCCCCCCc-C---CCCCCCcCCCCCCccC
Q 006424          565 SNDGPCRG-S---ATWPAEKLPLWDVTID  589 (645)
Q Consensus       565 s~dg~~l~-s---~s~~d~~i~iWd~~~~  589 (645)
                      ||||+.+. |   +...++.|++||..+.
T Consensus       370 SpDGk~i~vs~~~~~~~~~~i~v~D~~T~  398 (426)
T d1hzua2         370 NKRGDEVWFSVWNGKNDSSALVVVDDKTL  398 (426)
T ss_dssp             CSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred             CCCCCEEEEEEecCCCCCCeEEEEECCCC
Confidence            99999662 2   1223788999999988

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=1.4e-20  Score=196.13  Aligned_cols=311  Identities=12%  Similarity=0.041  Sum_probs=205.6

Q ss_pred             CC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcE--EEe----eccCC
Q 006424          298 SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV--VDW----ADVRD  370 (645)
Q Consensus       298 ~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~--~~~----~~~~~  370 (645)
                      ++ ++++.+.||+|.+||..+++++..+.....+..++|+| |++++++++.|+.|++||+.+++.  ...    ..+.+
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            34 46899999999999999999999998667899999999 999999999999999999987653  221    23445


Q ss_pred             CeEEEEEccCCCEE-EEEecCCeEEEEEecCCceeeeEEeecc-----ccccCCCCeEEEEEcCCCCcEEEEEECCCeEE
Q 006424          371 VISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHD-----RKKTSGNKITGIQFSRDESQRIMITSEDSKLR  444 (645)
Q Consensus       371 ~v~~l~~sp~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~  444 (645)
                      .+.+..|+|||+++ +++..++.+++||..+....... ..+.     ....+......+.++|+|..++++...++.|.
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~  188 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ-STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  188 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE-ECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeee-ccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE
Confidence            55666778899986 66788999999999887754331 1111     11123456778999999866677788889999


Q ss_pred             EEECCcce--eeEeecCCCCCeEEEEEecCCCEEEEEeC-CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEec
Q 006424          445 ILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW  521 (645)
Q Consensus       445 iwd~~~~~--~~~~~~~~~~~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~  521 (645)
                      +||.....  ..... .+...+..+.|+|+|+++++++. ++.+.++|..+.+...........    .++ +......+
T Consensus       189 ~~d~~~~~~~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~----~~~-~~~~~~~~  262 (432)
T d1qksa2         189 LVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT----PHP-GRGANFVH  262 (432)
T ss_dssp             EEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS----BCC-TTCEEEEE
T ss_pred             EEEccCCCcceEEEE-cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccc----ccc-Ccccceec
Confidence            99976432  22222 25567889999999998887775 568889998876432211111000    001 11112222


Q ss_pred             CCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhH
Q 006424          522 PGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQR  601 (645)
Q Consensus       522 s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~  601 (645)
                      ...+.........  ...+..|.....  ....+...+....|++++..+++++. +...++|...+..           
T Consensus       263 ~~~g~~~~~~~lg--~~~v~~~~~~~~--~~~~~~~~v~~~~~~~~g~~~~~~s~-p~~~~lw~~~~~~-----------  326 (432)
T d1qksa2         263 PTFGPVWATSHMG--DDSVALIGTDPE--GHPDNAWKILDSFPALGGGSLFIKTH-PNSQYLYVDATLN-----------  326 (432)
T ss_dssp             TTTEEEEEEEBSS--SSEEEEEECCTT--TCTTTBTSEEEEEECSCSCCCCEECC-TTCSEEEEECTTC-----------
T ss_pred             CCCCceecccccC--CceEEecccccc--cccccccEEEEEEEcCCCCeEEEEec-CCccceeecccCC-----------
Confidence            2222222211110  011223322111  22334455677889999999999988 6788899766541           


Q ss_pred             hhhhhccCCCCCccCCCCcceEEEEecCCCeEeEEEe
Q 006424          602 LQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHN  638 (645)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~d~~~ivt~s~Dg~Iriw~~  638 (645)
                            ++......+...|++.+++++.|+++++|++
T Consensus       327 ------~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~  357 (432)
T d1qksa2         327 ------PEAEISGSVAVFDIKAMTGDGSDPEFKTLPI  357 (432)
T ss_dssp             ------SSHHHHTCEEEEEGGGCCCSSSCCCEEEECH
T ss_pred             ------CCCCeeeEEEEEechhhcccccCCceEeccc
Confidence                  0111111222258999999999999999985

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=9.3e-19  Score=172.12  Aligned_cols=245  Identities=13%  Similarity=0.147  Sum_probs=184.7

Q ss_pred             ccccccccCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCC
Q 006424          193 SQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE  271 (645)
Q Consensus       193 ~~~l~~H~~~V~~l~fspdg~~L-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (645)
                      .+++.. .+.+..++|+|||++| ++++.++.|++||+.++                                       
T Consensus        25 ~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~---------------------------------------   64 (301)
T d1l0qa2          25 TATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---------------------------------------   64 (301)
T ss_dssp             EEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---------------------------------------
T ss_pred             EEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---------------------------------------
Confidence            344432 3457899999999987 56778999999999873                                       


Q ss_pred             ceeccCCCceeeccCccCeEEEEEcCCC--eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEE-EEEeC
Q 006424          272 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGSI  348 (645)
Q Consensus       272 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l-~s~s~  348 (645)
                            +.+..+..|. .+..+.|++++  .++++..++.+.+|+..+++....+.+.....++.|+| ++..+ +++..
T Consensus        65 ------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~~~~~~  136 (301)
T d1l0qa2          65 ------NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNG  136 (301)
T ss_dssp             ------EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETT
T ss_pred             ------ceeeeeeccc-cccccccccccccccccccccceeeecccccceeeeeccccccceEEEeec-CCCeeeeeecc
Confidence                  3345555554 46789999886  45677788899999999999999998888899999999 77765 45556


Q ss_pred             CCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecC-CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc
Q 006424          349 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS  427 (645)
Q Consensus       349 dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s  427 (645)
                      ++.+.+|+..+............+..+.++|+++.+++++.+ +.+.+|+...... ......       ...+..+.++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~  208 (301)
T d1l0qa2         137 DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-IDTVKV-------EAAPSGIAVN  208 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-------SSEEEEEEEC
T ss_pred             ccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceee-eecccc-------cCCcceeecc
Confidence            788999999999988877777889999999999998888776 4556666554433 222221       2457789999


Q ss_pred             CCCCcEEEEEE--CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEE-EEEeCCccEEEEeCCCCC
Q 006424          428 RDESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       428 ~~g~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l-~t~s~dg~I~iwd~~~~~  494 (645)
                      +++...++++.  .++.|++||..+........ ....+.+++|+|||++| ++++.|+.|++||+.+++
T Consensus       209 ~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ccccccccccccceeeeeeeeecCCCeEEEEEc-CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            99844433332  34789999988654433332 34568999999999987 577789999999998873

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=9.5e-19  Score=172.06  Aligned_cols=221  Identities=12%  Similarity=0.118  Sum_probs=166.8

Q ss_pred             EEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEEEE
Q 006424          216 ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW  295 (645)
Q Consensus       216 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  295 (645)
                      ++++.|++|.+||+.++                                             +.+..+. ....+..++|
T Consensus         6 V~~~~~~~v~v~D~~t~---------------------------------------------~~~~~i~-~g~~p~~va~   39 (301)
T d1l0qa2           6 IANSESDNISVIDVTSN---------------------------------------------KVTATIP-VGSNPMGAVI   39 (301)
T ss_dssp             EEETTTTEEEEEETTTT---------------------------------------------EEEEEEE-CSSSEEEEEE
T ss_pred             EEECCCCEEEEEECCCC---------------------------------------------eEEEEEE-CCCCceEEEE
Confidence            46778999999999874                                             3344444 2345788999


Q ss_pred             cCCC-eE-EEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEeCCCCcEEEeeccCCCe
Q 006424          296 SNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVVDWADVRDVI  372 (645)
Q Consensus       296 s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~v  372 (645)
                      +|+| +| ++++.++.|++||+.+++.+..+.....+..++|++ ++..+ +++..++.+.+|+..+++......+....
T Consensus        40 spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (301)
T d1l0qa2          40 SPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP  118 (301)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             eCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccc-ccccccccccccceeeecccccceeeeeccccccc
Confidence            9997 55 577789999999999999999988667789999999 77654 55566788999999999988888888889


Q ss_pred             EEEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEEC-CCeEEEEECCc
Q 006424          373 SAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVD  450 (645)
Q Consensus       373 ~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~-dg~I~iwd~~~  450 (645)
                      .++.|+|+++.++++ ..++.+.+|+..+...... ...       ...+..+.++|++ ..+++++. ++.+.+|+...
T Consensus       119 ~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  189 (301)
T d1l0qa2         119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT-VSV-------GRSPKGIAVTPDG-TKVYVANFDSMSISVIDTVT  189 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EEC-------CSSEEEEEECTTS-SEEEEEETTTTEEEEEETTT
T ss_pred             eEEEeecCCCeeeeeeccccceeeeeccccceeee-ccc-------CCCceEEEeeccc-cceeeecccccccccccccc
Confidence            999999999987654 5578899999987764332 211       2457889999998 55555554 56777887664


Q ss_pred             ceeeEeecCCCCCeEEEEEecCCCEEEEEeC---CccEEEEeCCCC
Q 006424          451 VIHKFKGLPKSGSQMSASFTTTGKHIISIGD---DCRVYVWNYDEL  493 (645)
Q Consensus       451 ~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~---dg~I~iwd~~~~  493 (645)
                      ....... .....+..++|+++++.++.++.   ++.|++||..++
T Consensus       190 ~~~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         190 NSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             TEEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             eeeeecc-cccCCcceeeccccccccccccccceeeeeeeeecCCC
Confidence            3332222 24456788999999998876643   468999999876

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=3.6e-18  Score=170.59  Aligned_cols=229  Identities=9%  Similarity=0.026  Sum_probs=170.2

Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec--cCccCe
Q 006424          213 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH--GHKGDV  290 (645)
Q Consensus       213 ~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V  290 (645)
                      +|+++++.|++|.|||+.++                                             +.+..+.  .+...+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~---------------------------------------------~~~~~i~~~~~~~~~   36 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM---------------------------------------------AVDKVITIADAGPTP   36 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT---------------------------------------------EEEEEEECTTCTTCC
T ss_pred             eEEEEEcCCCEEEEEECCCC---------------------------------------------eEEEEEECCCCCCCc
Confidence            58999999999999999973                                             3344443  344567


Q ss_pred             EEEEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEecC------CCcEEEEEEeeCCCCEEEEEe------------CCC
Q 006424          291 LDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDH------HNYVTCVQFNPIDDNYFISGS------------IDG  350 (645)
Q Consensus       291 ~~l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~------~~~v~~l~~~p~~~~~l~s~s------------~dg  350 (645)
                      .+++|+||| ++ ++++.++.|.+||+.+++.+..+..      ...+..++|+| ++++++++.            .+.
T Consensus        37 ~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T d1pbyb_          37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCC
T ss_pred             cEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeeecccccc
Confidence            889999998 55 5677899999999999999887742      23456789999 999888776            357


Q ss_pred             cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecc------------------
Q 006424          351 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD------------------  412 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~------------------  412 (645)
                      .+.+||..+++..........+..++|+|+|+++++++.+  +.+||..+...... .....                  
T Consensus       116 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  192 (337)
T d1pbyb_         116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVED-KPIQSWEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEE-ECSTTTTTTTBCCCBCCCCCCCC
T ss_pred             ceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEE-eecCCccccceecCCcceeeccc
Confidence            8999999999988877778889999999999999988644  56787654432111 00000                  


Q ss_pred             ------------------------------------------ccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424          413 ------------------------------------------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  450 (645)
Q Consensus       413 ------------------------------------------~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~  450 (645)
                                                                ....+...+..+.++|++ .+++.+  ++.|++||+.+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~  269 (337)
T d1pbyb_         193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTT
T ss_pred             cccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEEEECCC
Confidence                                                      000123345566677776 555544  58999999886


Q ss_pred             ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          451 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       451 ~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      ........ +...+.+++|+|||++|++++.|+.|++||..+.+
T Consensus       270 ~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         270 NASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             TEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             CcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            55444432 55678899999999999999999999999999874

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.76  E-value=1.7e-17  Score=166.20  Aligned_cols=234  Identities=9%  Similarity=-0.034  Sum_probs=155.6

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec-
Q 006424          206 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-  284 (645)
Q Consensus       206 l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  284 (645)
                      ++|+++++||++++.|++|.+||+.+                                             .+.+.++. 
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t---------------------------------------------~~~~~t~~~   36 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVAS---------------------------------------------DTVYKSCVM   36 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTT---------------------------------------------TEEEEEEEC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCC---------------------------------------------CCEEEEEEc
Confidence            46899999999999999999999987                                             34455554 


Q ss_pred             cCccCeEEEEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEecCC-------CcEEEEEEeeCCCCEEEEEe--------
Q 006424          285 GHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHH-------NYVTCVQFNPIDDNYFISGS--------  347 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~~~-------~~v~~l~~~p~~~~~l~s~s--------  347 (645)
                      .|...+.+++|+||| ++ ++++.++.|.+||+.+++.+..+...       ..+..++|+| +++++++++        
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~  115 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLND  115 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSS
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceee
Confidence            456678899999998 44 56678999999999999988776421       2356789999 888887665        


Q ss_pred             ----CCCcEEEEeCCCCcEEE---eeccCCCeEEE--------------------------------------EEccCCC
Q 006424          348 ----IDGKVRIWGVCEKRVVD---WADVRDVISAI--------------------------------------CYIPDGK  382 (645)
Q Consensus       348 ----~dg~i~vwd~~~~~~~~---~~~~~~~v~~l--------------------------------------~~sp~g~  382 (645)
                          .++.+.+||..+++...   .......+..+                                      .++|++.
T Consensus       116 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (346)
T d1jmxb_         116 HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL  195 (346)
T ss_dssp             CEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCC
T ss_pred             eeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEecccc
Confidence                35677888776543211   11111112222                                      2233332


Q ss_pred             EEEE--------------------------EecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006424          383 GFIV--------------------------GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI  436 (645)
Q Consensus       383 ~l~~--------------------------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~  436 (645)
                      .++.                          +..++.+.+||+............      +...+..+.+++++. +++.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~  268 (346)
T d1jmxb_         196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------LTELYFTGLRSPKDP-NQIY  268 (346)
T ss_dssp             CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE------CSSCEEEEEECSSCT-TEEE
T ss_pred             EEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeec------ccceeEEEEEeCCCC-EEEE
Confidence            2211                          112223444555444432222211      235677888888874 4554


Q ss_pred             EECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          437 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       437 ~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      .. ++.|++||........... ....+.+++|+|||++|++++.||.|++||..+++
T Consensus       269 ~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         269 GV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             EE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             ec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence            44 4679999987554333222 44578899999999999999999999999999874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=5.6e-17  Score=161.73  Aligned_cols=279  Identities=11%  Similarity=0.106  Sum_probs=177.3

Q ss_pred             eEEEEeCCCcEEEEecCCC---eEEEEecCCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEeCCCCc----EEEeeccCCC
Q 006424          300 YLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKR----VVDWADVRDV  371 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~---~~~~~~~~~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~----~~~~~~~~~~  371 (645)
                      .+++++.|++|++|++.+.   +.+..+.+...+..++|+| ++++|++++ .|+.|++|++....    ..........
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            4678889999999999754   4455667889999999999 999886555 58999999987542    2233445667


Q ss_pred             eEEEEEccCCCEEEEEec-CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE-CCCeEEEEECC
Q 006424          372 ISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDGV  449 (645)
Q Consensus       372 v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s-~dg~I~iwd~~  449 (645)
                      +..++|+|||+++++++. ++.+.+|+..............     +...+.++.++|++ +++++++ .+..|.+|+..
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~s~d~-~~~~~~~~~~~~i~~~~~~  158 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-----GLDGCHSANISPDN-RTLWVPALKQDRICLFTVS  158 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-----CCTTBCCCEECTTS-SEEEEEEGGGTEEEEEEEC
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccC-----CCccceEEEeeecc-eeeeccccccceeeEEEec
Confidence            888999999999999875 6789999988765433322222     23567788999998 5555554 56789999965


Q ss_pred             cceee------EeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecC
Q 006424          450 DVIHK------FKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP  522 (645)
Q Consensus       450 ~~~~~------~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s  522 (645)
                      .....      ............++|++++.+++... ..+...+|++...................+.........+++
T Consensus       159 ~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  238 (333)
T d1ri6a_         159 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT  238 (333)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred             cCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEe
Confidence            32111      11223445678899999999887665 557788888765432211100000000011122334566777


Q ss_pred             CCCccccccCCCCccccCcccccccc--CC---ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCc
Q 006424          523 GIGTEQKSLCSSSLRDCSQKWDNLET--AP---WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT  587 (645)
Q Consensus       523 ~~~~~l~~~~~~~~~~~~~~w~~~~~--~~---~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~  587 (645)
                      +++..++......-  .+.+|.....  ..   ..........+++|||||++++++...++.|.+|++.
T Consensus       239 ~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         239 PDGRHLYACDRTAS--LITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             TTSSEEEEEETTTT--EEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             cccCceeeecccCC--eEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            77776664433221  1112222111  11   1122334567889999999877665546889999553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.72  E-value=2.3e-17  Score=165.27  Aligned_cols=272  Identities=8%  Similarity=-0.061  Sum_probs=174.1

Q ss_pred             EEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEeCCCCcEEEeecc
Q 006424          293 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVVDWADV  368 (645)
Q Consensus       293 l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~  368 (645)
                      ++|++++ ++++++.|++|.+||+.+++.+..+.  +...+.+++|+| |++++ ++++.++.|++||+.+++.......
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            4677887 89999999999999999999998775  456788999999 88876 4555789999999999887653322


Q ss_pred             C-------CCeEEEEEccCCCEEEEEe------------cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          369 R-------DVISAICYIPDGKGFIVGS------------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       369 ~-------~~v~~l~~sp~g~~l~~g~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      .       ..+..++|+|||+++++++            .++.+.+|+..+............     ...+..+.++++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  155 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-----PRQVYLMRAADD  155 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-----CSSCCCEEECTT
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeec-----cCceEEEEecCC
Confidence            1       2466899999999998875            366788888776554322111111     234556677777


Q ss_pred             CCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCC--------------------------EEEEEeCCc
Q 006424          430 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--------------------------HIISIGDDC  483 (645)
Q Consensus       430 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~--------------------------~l~t~s~dg  483 (645)
                      + .++++   ++.+.+|+..+........ .......+.++|++.                          .++++..++
T Consensus       156 ~-~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (346)
T d1jmxb_         156 G-SLYVA---GPDIYKMDVKTGKYTVALP-LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  230 (346)
T ss_dssp             S-CEEEE---SSSEEEECTTTCCEEEEEC-STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             C-EEEEe---CCcceEEEccCCCEEEEEe-cCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence            6 44443   3568888876433222221 112222333344433                          333444456


Q ss_pred             cEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCC-ccCCCCccccCc
Q 006424          484 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP-WIRDSERFSLGS  562 (645)
Q Consensus       484 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~  562 (645)
                      .+.+||+.++....         .....+...+..+.+++++..++....+    .+.+|+...... .....+..+.++
T Consensus       231 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~v~d~~~~~~~~~~~~~~~~~~v  297 (346)
T d1jmxb_         231 GYLSVDLKTGKTHT---------QEFADLTELYFTGLRSPKDPNQIYGVLN----RLAKYDLKQRKLIKAANLDHTYYCV  297 (346)
T ss_dssp             EEEEEETTTCCEEE---------EEEEECSSCEEEEEECSSCTTEEEEEES----EEEEEETTTTEEEEEEECSSCCCEE
T ss_pred             eEEEEECCCCceEE---------EEeecccceeEEEEEeCCCCEEEEecCC----eEEEEECCCCcEEEEEcCCCCEEEE
Confidence            67777766552111         1111233456677777777777654443    234555432221 112234467889


Q ss_pred             cccCCCCCCcCCCCCCCcCCCCCCccC
Q 006424          563 WFSNDGPCRGSATWPAEKLPLWDVTID  589 (645)
Q Consensus       563 ~fs~dg~~l~s~s~~d~~i~iWd~~~~  589 (645)
                      +|||||+++++++. ++.|++||..++
T Consensus       298 a~s~DG~~l~v~~~-d~~v~v~D~~t~  323 (346)
T d1jmxb_         298 AFDKKGDKLYLGGT-FNDLAVFNPDTL  323 (346)
T ss_dssp             EECSSSSCEEEESB-SSEEEEEETTTT
T ss_pred             EEcCCCCEEEEEeC-CCcEEEEECccC
Confidence            99999999999887 899999999987

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=3.3e-15  Score=148.61  Aligned_cols=268  Identities=14%  Similarity=0.157  Sum_probs=178.8

Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEEE
Q 006424          214 YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDL  293 (645)
Q Consensus       214 ~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  293 (645)
                      .+++++.|++|++|++.+...                                           ..+.....|.+.+..+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~-------------------------------------------l~~~~~~~~~~~v~~l   42 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA-------------------------------------------LTLTQVVDVPGQVQPM   42 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC-------------------------------------------EEEEEEEECSSCCCCE
T ss_pred             EEEECCCCCcEEEEEEcCCCC-------------------------------------------eEEEEEEcCCCCEeEE
Confidence            457888999999999975211                                           0112223588899999


Q ss_pred             EEcCCC-eEEE-EeCCCcEEEEecCCCeEE----EEecCCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEeCCCCcEE---
Q 006424          294 AWSNSN-YLLS-CSMDKTVRMWQVGCNQCL----NVFDHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVV---  363 (645)
Q Consensus       294 ~~s~~~-~l~s-~s~dg~I~iwd~~~~~~~----~~~~~~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~~~~---  363 (645)
                      +|+||| +|++ +..|+.|++|++......    ....+...+..++|+| ++++|++++. ++.+.+|+.......   
T Consensus        43 a~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~  121 (333)
T d1ri6a_          43 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVV  121 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccceecc
Confidence            999998 6654 455899999999765332    2334556678899999 9999988875 678999987765543   


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEec-CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCe
Q 006424          364 DWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK  442 (645)
Q Consensus       364 ~~~~~~~~v~~l~~sp~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~  442 (645)
                      ....+...+.++.++|+++++++++. +..+.+|+............ .............+.|++++...+.+....+.
T Consensus       122 ~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~  200 (333)
T d1ri6a_         122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP-AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS  200 (333)
T ss_dssp             EEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE-EEEECSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             cccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeec-eeeeeecCCCccEEEEeccceeEEeeccccCc
Confidence            34556777889999999998888775 45799999876654332211 11112234567889999998544455556778


Q ss_pred             EEEEECCcce------eeEee----cCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCCcCCCcccCCcceeeee-
Q 006424          443 LRILDGVDVI------HKFKG----LPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQKNSVRSCEHF-  510 (645)
Q Consensus       443 I~iwd~~~~~------~~~~~----~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-  510 (645)
                      ..+|+.....      .....    .........+++++++++++... .++.+.+|++.......        ..... 
T Consensus       201 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  272 (333)
T d1ri6a_         201 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL--------SKEGFQ  272 (333)
T ss_dssp             EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE--------EEEEEE
T ss_pred             eEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE--------EEEEEe
Confidence            8888854211      11111    12344567889999999776654 57899999987652211        11111 


Q ss_pred             ecCCcEEEEecCCCCccccccCCC
Q 006424          511 FSEGVSVAVQWPGIGTEQKSLCSS  534 (645)
Q Consensus       511 ~~~g~~~~v~~s~~~~~l~~~~~~  534 (645)
                      ...+....++|+|||++|+..+.+
T Consensus       273 ~~~~~p~~~a~spDGk~l~va~~~  296 (333)
T d1ri6a_         273 PTETQPRGFNVDHSGKYLIAAGQK  296 (333)
T ss_dssp             ECSSSCCCEEECTTSSEEEEECTT
T ss_pred             CCCCCeeEEEEeCCCCEEEEEECC
Confidence            122334567889999988766543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=2.9e-17  Score=163.80  Aligned_cols=276  Identities=11%  Similarity=0.043  Sum_probs=167.1

Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEEEee---ccCCCeEEEEEccCCCEEE-EEecCCeEEEEEecCCceeeeEEeecccccc
Q 006424          341 NYFISGSIDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKT  416 (645)
Q Consensus       341 ~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  416 (645)
                      +++++++.|++|++||+.+++++...   .+...+.+++|+|||++++ +++.++.|.+||+.+.+.... ...... ..
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~-~~~~~~-~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR-IDLSTP-EE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE-EECCBT-TE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEE-EecCCC-cc
Confidence            58999999999999999999877643   2345688999999999875 566799999999998775432 222211 11


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEE------------CCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424          417 SGNKITGIQFSRDESQRIMITS------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR  484 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s------------~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~  484 (645)
                      +...+..++|+|++ .+++++.            .+..+.+||........... ....+..++|+|+|+++++++.+  
T Consensus        80 ~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--  155 (337)
T d1pbyb_          80 RVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGRD--  155 (337)
T ss_dssp             EEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESSS--
T ss_pred             cccceeeEEEcCCC-cEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcCC--
Confidence            12345678999998 6666665            45788899977554433332 44567889999999999998654  


Q ss_pred             EEEEeCCCCCcCCCcccCCcceeeeeecCCc-----------E--EEEecCCCCccccccCCCCccccCccccccccCC-
Q 006424          485 VYVWNYDELCFPSSKQKNSVRSCEHFFSEGV-----------S--VAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP-  550 (645)
Q Consensus       485 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~--~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~-  550 (645)
                      +.+||..++................+.+++.           .  .......+.........   ...+..|+...... 
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  232 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY---RTGLLTMDLETGEMA  232 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE---EEEEEEEETTTCCEE
T ss_pred             cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeeccc---CccEEEEEcCCCcEE
Confidence            6789988764222111110001111111111           0  00111111111111110   11122222211111 


Q ss_pred             --ccCCCCccccCccccCCCCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcceEEEEec
Q 006424          551 --WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAG  628 (645)
Q Consensus       551 --~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ivt~s  628 (645)
                        ....+.......++++++.++.++   ++.|++||+.+++          ........+....++|++ ||.+|++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~s~-dG~~l~v~~  298 (337)
T d1pbyb_         233 MREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNA----------SIKRVPLPHSYYSVNVST-DGSTVWLGG  298 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTE----------EEEEEECSSCCCEEEECT-TSCEEEEES
T ss_pred             EEEecCCCcceEEEEecccceEEEEc---cccEEEEECCCCc----------EEEEEcCCCCEEEEEECC-CCCEEEEEe
Confidence              122234455666788898877655   4589999999873          122222334444566666 799999999


Q ss_pred             CCCeEeEEEec
Q 006424          629 CDGMIKTFHNY  639 (645)
Q Consensus       629 ~Dg~Iriw~~~  639 (645)
                      .||+|++|+..
T Consensus       299 ~~~~i~v~D~~  309 (337)
T d1pbyb_         299 ALGDLAAYDAE  309 (337)
T ss_dssp             BSSEEEEEETT
T ss_pred             CCCcEEEEECC
Confidence            99999999965

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.67  E-value=2.4e-14  Score=145.02  Aligned_cols=201  Identities=11%  Similarity=-0.061  Sum_probs=137.0

Q ss_pred             cccccCcEEEEEECCCCCEEEEE-----eCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCC
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASG-----GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD  270 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sg-----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (645)
                      ...|.+++.+++++|||+.++..     +.++.|.+||..+                                       
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t---------------------------------------   56 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS---------------------------------------   56 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCC---------------------------------------
Confidence            34688999999999999988764     2345799999887                                       


Q ss_pred             CceeccCCCceeeccCccCeEEEEEcCCC-eEEEEe----------CCCcEEEEecCCCeEEEEecC-CCc-------EE
Q 006424          271 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDH-HNY-------VT  331 (645)
Q Consensus       271 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s----------~dg~I~iwd~~~~~~~~~~~~-~~~-------v~  331 (645)
                            ++.+..+..+..+  .++|+||| ++++++          .++.|.+||..+++.+..+.. ...       ..
T Consensus        57 ------g~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~  128 (373)
T d2madh_          57 ------GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW  128 (373)
T ss_pred             ------CCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCC
Confidence                  3444555555433  68999998 666654          467899999999998877642 222       24


Q ss_pred             EEEEeeCCCCEEEEEe--CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEE-EEEecCCeEEEEEecCCceeeeEE
Q 006424          332 CVQFNPIDDNYFISGS--IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKV  408 (645)
Q Consensus       332 ~l~~~p~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~  408 (645)
                      .+.|++ +++.++...  .++.+.+|+....+....   .....++.++|+|+.+ ++.+.||.+.+|+...........
T Consensus       129 ~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~  204 (373)
T d2madh_         129 MNANTP-NNADLLFFQFAAGPAVGLVVQGGSSDDQL---LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV  204 (373)
T ss_pred             cEEEEe-CCCcEEEEEEcCCCceEEeeccCCeEEEE---eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence            578888 777655544  456788888877665443   3345678899998755 577889999999998766543322


Q ss_pred             eeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCc
Q 006424          409 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD  450 (645)
Q Consensus       409 ~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~  450 (645)
                      . ...............+.+++  .++..+.++.+.+|+...
T Consensus       205 ~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         205 G-AMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISA  243 (373)
T ss_pred             e-eccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCC
Confidence            1 11111112233445566654  566777889999998664

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.67  E-value=8.8e-15  Score=148.32  Aligned_cols=297  Identities=8%  Similarity=-0.017  Sum_probs=185.7

Q ss_pred             eccCccCeEEEEEcCCC-eEEEE-----eCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe---------
Q 006424          283 LHGHKGDVLDLAWSNSN-YLLSC-----SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS---------  347 (645)
Q Consensus       283 l~~h~~~V~~l~~s~~~-~l~s~-----s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s---------  347 (645)
                      ...+.+++.+++++|++ .++..     +.++.|.+||..+++.+..+.... ...++|+| |++++++++         
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~-~~~~a~Sp-DG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-LPNPVAAH-SGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC-CccEEEcC-CCCEEEEEeecCCccccc
Confidence            34688899999999998 55443     344679999999999998875332 23789999 999998875         


Q ss_pred             -CCCcEEEEeCCCCcEEEeecc-CC-------CeEEEEEccCCCEEEEEe--cCCeEEEEEecCCceeeeEEeecccccc
Q 006424          348 -IDGKVRIWGVCEKRVVDWADV-RD-------VISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKT  416 (645)
Q Consensus       348 -~dg~i~vwd~~~~~~~~~~~~-~~-------~v~~l~~sp~g~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~  416 (645)
                       .++.|.+||..+++....... ..       ....+.|+++++.+++..  .++.+.+|+.........          
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~----------  163 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL----------  163 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE----------
Confidence             357899999999887654322 22       234578889998776654  356788888776543211          


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceee--Eee----cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          417 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK--FKG----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       417 ~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~--~~~----~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                       .....++.++|+|...+++.+.|+.+.+|+.......  ...    ...........+++++.+ +..+.++.+++|+.
T Consensus       164 -~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~  241 (373)
T d2madh_         164 -LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADI  241 (373)
T ss_pred             -eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEc
Confidence             1345688999998777889999999999997643222  111    111222344556666544 45567899999998


Q ss_pred             CCCCcCCCcccC---CcceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCC
Q 006424          491 DELCFPSSKQKN---SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSND  567 (645)
Q Consensus       491 ~~~~~~~~~~~~---~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~d  567 (645)
                      ............   .......+.+ +....+++++++..++.                                 +..+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~---------------------------------~~~~  287 (373)
T d2madh_         242 SAAGATNKAPIDALSGGRKADTWRP-GGWQQVAYLKSSDGIYL---------------------------------LTSE  287 (373)
T ss_pred             CCCeEEEEEeeccccCcEEeeeecc-CcceeeEEecCCCeEEE---------------------------------ecCC
Confidence            876321111000   0000011111 12233444444444332                                 2223


Q ss_pred             CCCCcCCCCCCCcCCCCCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcce--EEEEecCCCeEeEEEec
Q 006424          568 GPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGL--VIVTAGCDGMIKTFHNY  639 (645)
Q Consensus       568 g~~l~s~s~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~ivt~s~Dg~Iriw~~~  639 (645)
                      +..+++... ++.+.+||..+++          .............+.|++ ||+  ++++++.|++|++||..
T Consensus       288 ~~~~~~~~~-~~~v~~~d~~t~~----------~~~~~~~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         288 QSAWKLHAA-AKEVTSVTGLVGQ----------TSSQISLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             CceEEeecC-CCeEEEEECCCCc----------EEEEecCCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECC
Confidence            333333333 5688899998883          122223334444566776 676  56899999999999964

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=5.8e-15  Score=148.42  Aligned_cols=291  Identities=10%  Similarity=-0.012  Sum_probs=170.6

Q ss_pred             EEcCCC-eEEEE-----eCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEe----------CCCcEEEEeC
Q 006424          294 AWSNSN-YLLSC-----SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----------IDGKVRIWGV  357 (645)
Q Consensus       294 ~~s~~~-~l~s~-----s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s----------~dg~i~vwd~  357 (645)
                      +.+|++ +++..     ..+..|.+||..+++.+..+... ....++|+| ++++|++++          .|+.|++||+
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-~~~~~a~Sp-Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLPNPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSCEEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-CCCceEEcC-CCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            456887 55543     34567999999999998887522 233689999 999887643          4789999999


Q ss_pred             CCCcEEEeec--------cCCCeEEEEEccCCCEEEEEe--cCCeEEEEEecCCceeeeEEeecccc-ccCCCCeEEEEE
Q 006424          358 CEKRVVDWAD--------VRDVISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRK-KTSGNKITGIQF  426 (645)
Q Consensus       358 ~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~  426 (645)
                      .+++......        .......+.|+|+|++++++.  .+..+.+|+..+...... +...... .........+.+
T Consensus        86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  164 (355)
T d2bbkh_          86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM-LDVPDCYHIFPTAPDTFFMH  164 (355)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE-EECCSEEEEEEEETTEEEEE
T ss_pred             CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeE-EecCCcceEeecCCcceEEE
Confidence            9988765321        122345689999999888775  456889999987764322 2211100 000122334556


Q ss_pred             cCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccC-C--
Q 006424          427 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN-S--  503 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~-~--  503 (645)
                      ++++..+++....++.+.+++.....     ..+...+....+++++..++.++.++.+++|++..+......... .  
T Consensus       165 ~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  239 (355)
T d2bbkh_         165 CRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE  239 (355)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred             cCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCccc
Confidence            66653333333444455555433211     112333445678888999999999999999999887532211110 0  


Q ss_pred             cceeeeeecCCcEEEEecCCCCccccccCCCCccccCccccccccCCccCCCCccccCccccCCCCCCcCCCCCCCcCCC
Q 006424          504 VRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPL  583 (645)
Q Consensus       504 ~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~fs~dg~~l~s~s~~d~~i~i  583 (645)
                      ......+.+.+. ..+++++++..++....+..                                 ....... ...|.+
T Consensus       240 ~~~~~~~~p~~~-~~~~~~~d~~~~~~~~~~~~---------------------------------~~~~~~~-~~~v~v  284 (355)
T d2bbkh_         240 AERADGWRPGGW-QQVAYHRALDRIYLLVDQRD---------------------------------EWRHKTA-SRFVVV  284 (355)
T ss_dssp             HHHHTTEEECSS-SCEEEETTTTEEEEEEEECC---------------------------------TTCTTSC-EEEEEE
T ss_pred             ceEeeeeeccce-EEEEEeCCCCeEEEEeccCC---------------------------------ceeecCC-CCeEEE
Confidence            001112233332 23555666665553222111                                 1111111 346889


Q ss_pred             CCCccCCCCCcCChhhhHhhhhhccCCCCCccCCCCcce--EEEEecCCCeEeEEEe
Q 006424          584 WDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGL--VIVTAGCDGMIKTFHN  638 (645)
Q Consensus       584 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~ivt~s~Dg~Iriw~~  638 (645)
                      ||..+++          ..............++++ ||+  ++++++.|++|++||.
T Consensus       285 ~d~~t~~----------~~~~~~~~~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         285 LDAKTGE----------RLAKFEMGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             EETTTCC----------EEEEEEEEEEECEEEECC-SSSCEEEEEETTTTEEEEEET
T ss_pred             EeCCCCc----------EEEEecCCCCEEEEEEcC-CCCeEEEEEECCCCEEEEEEC
Confidence            9988873          111122233334466766 675  6788999999999995

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=5.9e-14  Score=140.88  Aligned_cols=240  Identities=13%  Similarity=0.049  Sum_probs=154.9

Q ss_pred             EEECCCCCEEEEEe-----CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCc
Q 006424          206 LKFSPDGRYLASGG-----EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL  280 (645)
Q Consensus       206 l~fspdg~~L~sgs-----~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (645)
                      .+.+|||+.++...     .++.|.+||..++                                             +.+
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg---------------------------------------------~~~   41 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---------------------------------------------RVI   41 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---------------------------------------------EEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCC---------------------------------------------cEE
Confidence            35689999887653     4567999999873                                             334


Q ss_pred             eeeccCccCeEEEEEcCCC-eEEEE----------eCCCcEEEEecCCCeEEEEec--------CCCcEEEEEEeeCCCC
Q 006424          281 QELHGHKGDVLDLAWSNSN-YLLSC----------SMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDDN  341 (645)
Q Consensus       281 ~~l~~h~~~V~~l~~s~~~-~l~s~----------s~dg~I~iwd~~~~~~~~~~~--------~~~~v~~l~~~p~~~~  341 (645)
                      ..+..+..  ..++|+||+ +|+.+          +.|+.|++||..+++.+..+.        .......++|+| +++
T Consensus        42 ~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~  118 (355)
T d2bbkh_          42 GMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGK  118 (355)
T ss_dssp             EEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSS
T ss_pred             EEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec-CCC
Confidence            44544433  368999998 55543          457899999999999887663        122345688999 888


Q ss_pred             EEEEEe--CCCcEEEEeCCCCcEEEeeccC----------------------------------------------CCeE
Q 006424          342 YFISGS--IDGKVRIWGVCEKRVVDWADVR----------------------------------------------DVIS  373 (645)
Q Consensus       342 ~l~s~s--~dg~i~vwd~~~~~~~~~~~~~----------------------------------------------~~v~  373 (645)
                      .+++++  .+..+.+|+..+++........                                              ..+.
T Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  198 (355)
T d2bbkh_         119 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLIN  198 (355)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCS
T ss_pred             eeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceee
Confidence            877765  4567899999887644321110                                              1122


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEEecCCceeeeE-Eeeccc----cccCCCCeEEEEEcCCCCcEEEEEECC--------
Q 006424          374 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-VDFHDR----KKTSGNKITGIQFSRDESQRIMITSED--------  440 (645)
Q Consensus       374 ~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~----~~~~~~~i~~i~~s~~g~~~l~~~s~d--------  440 (645)
                      ...+.+++..++.++.++.+++|++......... ...+..    ..........+.+++++ ..++....+        
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~  277 (355)
T d2bbkh_         199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKT  277 (355)
T ss_dssp             CCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTS
T ss_pred             eccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCC-CeEEEEeccCCceeecC
Confidence            3345556667777888899999998876543221 110000    00001223457889998 455444332        


Q ss_pred             --CeEEEEECCcceeeEeecCCCCCeEEEEEecCCC--EEEEEeCCccEEEEeCCCCCc
Q 006424          441 --SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDELCF  495 (645)
Q Consensus       441 --g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~--~l~t~s~dg~I~iwd~~~~~~  495 (645)
                        ..|.+||..+........ ....+.+++|+|||+  ++++++.|+.|++||+.+++.
T Consensus       278 ~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         278 ASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             CEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             CCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence              479999977543222221 234578999999998  456677899999999998853

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.49  E-value=2e-12  Score=135.31  Aligned_cols=143  Identities=12%  Similarity=0.125  Sum_probs=108.4

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec
Q 006424          205 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  284 (645)
Q Consensus       205 ~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  284 (645)
                      .+.|.++++++..  .|+.+.+||+.++..... +                                       .-..+.
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~-~---------------------------------------~~~~~~   58 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVF-L---------------------------------------ENSTFD   58 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEE-E---------------------------------------CTTTTT
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEE-E---------------------------------------chhhhh
Confidence            4779999988764  578899999998543211 0                                       012345


Q ss_pred             cCccCeEEEEEcCCC-eEEEEe---------CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 006424          285 GHKGDVLDLAWSNSN-YLLSCS---------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI  354 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~-~l~s~s---------~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~v  354 (645)
                      .|...|.++.||||+ +|+.++         .++.+.+||+.+++......+...+..+.|+| +|+.+|... ++.+++
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SP-DG~~ia~~~-~~~l~~  136 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYV  136 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS-STTCEEEEE-TTEEEE
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccccccccc-CcceeeEee-cccceE
Confidence            677889999999998 677664         35788999999998776667888999999999 999999865 678999


Q ss_pred             EeCCCCcEEEeec-------------------cCCCeEEEEEccCCCEEEEEecCC
Q 006424          355 WGVCEKRVVDWAD-------------------VRDVISAICYIPDGKGFIVGSITG  391 (645)
Q Consensus       355 wd~~~~~~~~~~~-------------------~~~~v~~l~~sp~g~~l~~g~~dg  391 (645)
                      |+..++.......                   ..+....+.|+|||++|+....|.
T Consensus       137 ~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             EECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence            9999887665322                   123346688999999999976543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.33  E-value=5e-12  Score=127.53  Aligned_cols=299  Identities=12%  Similarity=0.043  Sum_probs=176.6

Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeE--ecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeeccCccCeEE
Q 006424          215 LASGGEDGVVRIWHVTSVAASCKS--FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD  292 (645)
Q Consensus       215 L~sgs~Dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  292 (645)
                      ++||+.+|.|++|++.+++.....  |++++............+..                 ..........|......
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~-----------------~~~~~~~gd~hhP~~s~   76 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILG-----------------GDQQYLNGDCHHPHISM   76 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHC-----------------SSSCCSCCCBCCCEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEe-----------------cccccccCcccCCCcce
Confidence            668889999999999887765442  23333222111111000000                 00011112234445555


Q ss_pred             EEEcCCC-eE-EEEeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCC--EEEEEeCCC----------------
Q 006424          293 LAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDN--YFISGSIDG----------------  350 (645)
Q Consensus       293 l~~s~~~-~l-~s~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~--~l~s~s~dg----------------  350 (645)
                      ..++||| +| ++...+..|.++|++++++...+.  +...+..++|+| +++  +++..+.+.                
T Consensus        77 t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~  155 (441)
T d1qnia2          77 TDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSY  155 (441)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEE
T ss_pred             ecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCccccccccccc
Confidence            5567888 55 455678899999999999877654  567899999999 787  444444332                


Q ss_pred             -cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC---------------eEEEEE-----------------
Q 006424          351 -KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---------------TCHFYK-----------------  397 (645)
Q Consensus       351 -~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg---------------~i~iwd-----------------  397 (645)
                       .+..+|..+.+.............+.|+|+|+++++++.+.               .+.+.+                 
T Consensus       156 ~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~  235 (441)
T d1qnia2         156 TMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG  235 (441)
T ss_dssp             EEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred             ceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC
Confidence             23557888877766555566788999999999999887542               122222                 


Q ss_pred             ---------ecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceee----------Eeec
Q 006424          398 ---------ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK----------FKGL  458 (645)
Q Consensus       398 ---------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~----------~~~~  458 (645)
                               ...... ...+..       +.....+.++|||...++++..+++|.+||+.+....          +...
T Consensus       236 ~~~v~vvd~~~~~~v-~~~IPv-------gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~  307 (441)
T d1qnia2         236 DSKVPVVDGRGESEF-TRYIPV-------PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE  307 (441)
T ss_dssp             TCCCCEEECSSSCSS-EEEECC-------BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC
T ss_pred             CCCcEEEEcccCCce-EEEEeC-------CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee
Confidence                     111111 111111       1334678999999656677788999999997643221          1111


Q ss_pred             -CCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcc-cCCccee--ee--eecCCcEEEEecCCCCccccccC
Q 006424          459 -PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSC--EH--FFSEGVSVAVQWPGIGTEQKSLC  532 (645)
Q Consensus       459 -~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~--~~--~~~~g~~~~v~~s~~~~~l~~~~  532 (645)
                       ...-.....+|+++|..+.+...|..|..|++.......... ...+..-  .+  ..|...+.+.+++|||++|++++
T Consensus       308 ~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         308 PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             cccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence             112234567899999988888999999999985321000000 0001000  01  11222233466889999999887


Q ss_pred             CCCcccc
Q 006424          533 SSSLRDC  539 (645)
Q Consensus       533 ~~~~~~~  539 (645)
                      .-+..+.
T Consensus       388 k~s~dr~  394 (441)
T d1qnia2         388 KFSKDRF  394 (441)
T ss_dssp             SCCGGGS
T ss_pred             ccccccC
Confidence            6555443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.25  E-value=5.8e-11  Score=119.60  Aligned_cols=256  Identities=7%  Similarity=-0.068  Sum_probs=152.3

Q ss_pred             cccccccCcEEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCc
Q 006424          194 QEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH  263 (645)
Q Consensus       194 ~~l~~H~~~V~~l~fspdg~~L~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (645)
                      .++.++...  .++|+|||++|++++          .|+.|.+||..++........+..                    
T Consensus        60 ~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~--------------------  117 (368)
T d1mdah_          60 GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA--------------------  117 (368)
T ss_dssp             EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS--------------------
T ss_pred             EEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc--------------------
Confidence            334445444  589999999888764          377899999988544322111100                    


Q ss_pred             ceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEe-CCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCC
Q 006424          264 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN  341 (645)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~  341 (645)
                                    ...    ........++|+||| +++.+. .++.+.+||+.+++.+..+......   .+.|....
T Consensus       118 --------------~~~----~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~  176 (368)
T d1mdah_         118 --------------PRF----SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF---HIHPGAAA  176 (368)
T ss_dssp             --------------CSC----CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC---CCEEEETT
T ss_pred             --------------cee----cccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc---eEccCCCc
Confidence                          000    011122357999998 666554 6799999999999998887533322   12222456


Q ss_pred             EEEEEeCCCcEEEEeCCCCcEEE-------eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEE-eeccc
Q 006424          342 YFISGSIDGKVRIWGVCEKRVVD-------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV-DFHDR  413 (645)
Q Consensus       342 ~l~s~s~dg~i~vwd~~~~~~~~-------~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~  413 (645)
                      .++..+.||.+.++++.......       ...+...+....+.+++..+..  ..+.+.+++........... .....
T Consensus       177 ~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~  254 (368)
T d1mdah_         177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNES  254 (368)
T ss_dssp             EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCT
T ss_pred             eEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccc
Confidence            77777889999888876543221       1223344556777777755543  45667777766554332110 00000


Q ss_pred             ----cccCCCCeEEEEEcCCCCcEEEEEECC--------CeEEEEECCcceeeEeecCCCCCeEEEEEecCCC-E-EEEE
Q 006424          414 ----KKTSGNKITGIQFSRDESQRIMITSED--------SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-H-IISI  479 (645)
Q Consensus       414 ----~~~~~~~i~~i~~s~~g~~~l~~~s~d--------g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~-~-l~t~  479 (645)
                          ..........+++++++...+++...+        ..|.+||.......... .....+.+++|+|||+ + ++++
T Consensus       255 ~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~~a~spDG~~~ly~s~  333 (368)
T d1mdah_         255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC-EEEEEECEEEECCSSSCEEEEEE
T ss_pred             eeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe-cCCCceeEEEECCCCCEEEEEEe
Confidence                000012233577888874444443322        36889998754332222 1334678899999997 3 4566


Q ss_pred             eCCccEEEEeCCCCCc
Q 006424          480 GDDCRVYVWNYDELCF  495 (645)
Q Consensus       480 s~dg~I~iwd~~~~~~  495 (645)
                      ..|+.|++||..+++.
T Consensus       334 ~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         334 AGTEVLDIYDAASDQD  349 (368)
T ss_dssp             TTTTEEEEEESSSCEE
T ss_pred             CCCCeEEEEECCCCCE
Confidence            7789999999998853

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.23  E-value=2.7e-10  Score=118.75  Aligned_cols=116  Identities=10%  Similarity=0.143  Sum_probs=87.0

Q ss_pred             cccccccccCcEEEEEECCCCCEEEEEeC---------CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCC
Q 006424          192 TSQEIQAHKGCIWTLKFSPDGRYLASGGE---------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS  262 (645)
Q Consensus       192 ~~~~l~~H~~~V~~l~fspdg~~L~sgs~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (645)
                      ..++|..|...|.+..|||||++|+.++.         ++.+.+||+.++                              
T Consensus        53 ~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~------------------------------  102 (470)
T d2bgra1          53 ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR------------------------------  102 (470)
T ss_dssp             CTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT------------------------------
T ss_pred             chhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC------------------------------
Confidence            34567788899999999999999998854         567888998763                              


Q ss_pred             cceeecCCCceeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec----------------
Q 006424          263 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD----------------  325 (645)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~----------------  325 (645)
                                      .+..+..|...+..+.||||| .++. ..++.+.+|+..+++......                
T Consensus       103 ----------------~~~~l~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~  165 (470)
T d2bgra1         103 ----------------QLITEERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (470)
T ss_dssp             ----------------EECCSSCCCTTEEEEEECSSTTCEEE-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             ----------------cccccccCCccccccccccCcceeeE-eecccceEEECCCCceeeeeeccCCCcccccccceee
Confidence                            244566788899999999998 5665 567899999999887665432                


Q ss_pred             ---CCCcEEEEEEeeCCCCEEEEEeCCCc-EEEE
Q 006424          326 ---HHNYVTCVQFNPIDDNYFISGSIDGK-VRIW  355 (645)
Q Consensus       326 ---~~~~v~~l~~~p~~~~~l~s~s~dg~-i~vw  355 (645)
                         ..+....+.|+| +++.|+....|.+ +..|
T Consensus       166 ~~~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         166 EEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             HHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEE
T ss_pred             eeeecCCccccEECC-CCCccceeEecCCcCceE
Confidence               122345678999 9999998876533 4433

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.10  E-value=1.1e-09  Score=110.01  Aligned_cols=246  Identities=8%  Similarity=-0.114  Sum_probs=140.3

Q ss_pred             CCceeeccCccCeEEEEEcCCC-eEEEEe----------CCCcEEEEecCCCeEEEEec--------CCCcEEEEEEeeC
Q 006424          278 SPLQELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPI  338 (645)
Q Consensus       278 ~~~~~l~~h~~~V~~l~~s~~~-~l~s~s----------~dg~I~iwd~~~~~~~~~~~--------~~~~v~~l~~~p~  338 (645)
                      +.+..+.++...  .++|+|++ .++..+          .|+.|.+||..+++.+..+.        .......++|+| 
T Consensus        57 ~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-  133 (368)
T d1mdah_          57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-  133 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-
T ss_pred             cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-
Confidence            334455545443  57899998 555543          47789999999999887763        112234689999 


Q ss_pred             CCCEEEEEe-CCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccC
Q 006424          339 DDNYFISGS-IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS  417 (645)
Q Consensus       339 ~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  417 (645)
                      |+++++++. .++.+.+||+.+++............  .+......++..+.||.+.++++........... ......+
T Consensus       134 DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~-~~~~~~~  210 (368)
T d1mdah_         134 SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG-AQCTGAQ  210 (368)
T ss_dssp             TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECC-CCSCTTS
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeee-ccccccc
Confidence            999888776 57999999999988876544333221  1112234566677788888888765543322111 1111122


Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEee--cC----------CCCCeEEEEEecCCCEEEEEeCC---
Q 006424          418 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG--LP----------KSGSQMSASFTTTGKHIISIGDD---  482 (645)
Q Consensus       418 ~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~--~~----------~~~~i~~v~~sp~~~~l~t~s~d---  482 (645)
                      ...+....+.+++ ..+.+  .++.+++++..........  ..          .......+++++++..++....+   
T Consensus       211 ~~~~~~~~~~~~g-~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~  287 (368)
T d1mdah_         211 NCSSQAAQANYPG-MLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR  287 (368)
T ss_dssp             CBCSCCEEETTTT-EEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSS
T ss_pred             ccceeecccccCc-EEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCc
Confidence            2344556777775 44433  3445555554321111110  00          01122357889998887665322   


Q ss_pred             ------ccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCcc-ccccCCCCccccCccccc
Q 006424          483 ------CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTE-QKSLCSSSLRDCSQKWDN  545 (645)
Q Consensus       483 ------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~-l~~~~~~~~~~~~~~w~~  545 (645)
                            ..|.+||..+++.....           ...+.+..++|+|||.. |+.....  ...+.+|+.
T Consensus       288 ~~~~~~~~v~v~D~~t~~~~~~~-----------~~~~~~~~~a~spDG~~~ly~s~~~--~~~v~v~D~  344 (368)
T d1mdah_         288 SCLAAAENTSSVTASVGQTSGPI-----------SNGHDSDAIIAAQDGASDNYANSAG--TEVLDIYDA  344 (368)
T ss_dssp             CTTSCEEEEEEEESSSCCEEECC-----------EEEEEECEEEECCSSSCEEEEEETT--TTEEEEEES
T ss_pred             eeecCCceEEEEECCCCcEeEEe-----------cCCCceeEEEECCCCCEEEEEEeCC--CCeEEEEEC
Confidence                  36999999887432221           11233557788888864 3333221  133556665

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.09  E-value=1.3e-10  Score=117.13  Aligned_cols=233  Identities=14%  Similarity=0.095  Sum_probs=152.0

Q ss_pred             cccCcEEEEEECCCCCEEEEE-eCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceecc
Q 006424          198 AHKGCIWTLKFSPDGRYLASG-GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE  276 (645)
Q Consensus       198 ~H~~~V~~l~fspdg~~L~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (645)
                      .|.....+..++|||++|+.. ..+.+|.++|+.+++.                                          
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~------------------------------------------  106 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKT------------------------------------------  106 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE------------------------------------------
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcE------------------------------------------
Confidence            455667777788999988655 5688999999987432                                          


Q ss_pred             CCCceeec-cCccCeEEEEEcCCC--eEEEEeCCCc------------------EEEEecCCCeEEEEecCCCcEEEEEE
Q 006424          277 ESPLQELH-GHKGDVLDLAWSNSN--YLLSCSMDKT------------------VRMWQVGCNQCLNVFDHHNYVTCVQF  335 (645)
Q Consensus       277 ~~~~~~l~-~h~~~V~~l~~s~~~--~l~s~s~dg~------------------I~iwd~~~~~~~~~~~~~~~v~~l~~  335 (645)
                         ...+. .+...+..++|+|++  .++++..+..                  +..+|..+.+.............+.|
T Consensus       107 ---~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~  183 (441)
T d1qnia2         107 ---DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDA  183 (441)
T ss_dssp             ---EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEE
T ss_pred             ---eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEE
Confidence               22222 355678889999876  2333333322                  35578888877777765667788999


Q ss_pred             eeCCCCEEEEEeCC-----------------------------------------CcEEEEeCCCCcEEEeeccCCCeEE
Q 006424          336 NPIDDNYFISGSID-----------------------------------------GKVRIWGVCEKRVVDWADVRDVISA  374 (645)
Q Consensus       336 ~p~~~~~l~s~s~d-----------------------------------------g~i~vwd~~~~~~~~~~~~~~~v~~  374 (645)
                      +| +++++++++.+                                         +.+.+++..................
T Consensus       184 sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhG  262 (441)
T d1qnia2         184 DY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHG  262 (441)
T ss_dssp             CS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCC
T ss_pred             CC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccC
Confidence            99 88888877643                                         3344444444444444445556788


Q ss_pred             EEEccCCCEEEE-EecCCeEEEEEecCCceee-------eEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEE
Q 006424          375 ICYIPDGKGFIV-GSITGTCHFYKASGNDLKL-------EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL  446 (645)
Q Consensus       375 l~~sp~g~~l~~-g~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iw  446 (645)
                      +.++|||+++++ +..++++.+||+.......       ..+..+.   ..+-.....+|.++| +.+.+..-|..|..|
T Consensus       263 v~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~---~~glgplh~~fd~~g-~~yts~~~ds~v~kw  338 (441)
T d1qnia2         263 LNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP---ELGLGPLHTTFDGRG-NAYTTLFIDSQVCKW  338 (441)
T ss_dssp             EEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECC---BCCSCEEEEEECSSS-EEEEEETTTTEEEEE
T ss_pred             ceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeec---ccccCcccceecCCc-eEEEcccccceEEEe
Confidence            999999998765 5678999999986422110       0010110   112234556899997 777888899999999


Q ss_pred             ECCcc------------eeeEee---cCCCCCeEEEEEecCCCEEEEEe
Q 006424          447 DGVDV------------IHKFKG---LPKSGSQMSASFTTTGKHIISIG  480 (645)
Q Consensus       447 d~~~~------------~~~~~~---~~~~~~i~~v~~sp~~~~l~t~s  480 (645)
                      ++...            ...+..   ..|...+.+.+++|||++|++++
T Consensus       339 ~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         339 NIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             ccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            95311            111211   12444445567899999999995

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.06  E-value=1.7e-08  Score=95.69  Aligned_cols=193  Identities=10%  Similarity=0.048  Sum_probs=132.0

Q ss_pred             eEEEEEcCCCe-EEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEe-ec
Q 006424          290 VLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-AD  367 (645)
Q Consensus       290 V~~l~~s~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~  367 (645)
                      ...+++++++. +++....+.+++++-.+...+..........++++.+ +++++++-..+..+..++......... ..
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccc-cceeEeeccccccccccccccceeeeeeec
Confidence            45678888874 4455555556666655555554444456688999998 888887776677788888766554332 22


Q ss_pred             cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEE
Q 006424          368 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD  447 (645)
Q Consensus       368 ~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd  447 (645)
                      .......++++++|+.+++...++.|..++.........  ...     .......+++.++| .++++....+.|..++
T Consensus       138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~--~~~-----~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--PFT-----DITAPWGIAVDEAG-TVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--CCS-----SCCSEEEEEECTTC-CEEEEETTTTEEEEEC
T ss_pred             ccCCcceeeecCCCCEeeeccccccccccccccceeeee--ecc-----ccCCCccceeeeee-eeeeeecCCCEEEEEe
Confidence            334567899999999888888888999998876543221  111     12456889999997 7777777788899888


Q ss_pred             CCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          448 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       448 ~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      .............-....+|+++++|.++++-..+++|+..+..
T Consensus       210 ~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         210 AGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             TTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            65433333332234567899999999988877777777766543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.2e-07  Score=89.80  Aligned_cols=229  Identities=14%  Similarity=0.167  Sum_probs=141.4

Q ss_pred             ccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCC---cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeC-C
Q 006424          275 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-D  349 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~-d  349 (645)
                      .++...+.+..+...+..-+||||| .|+......   .+.+.+...+.......+........|+| ++..++.... +
T Consensus        26 ~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~i~~~~~~~  104 (269)
T d2hqsa1          26 YDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKT  104 (269)
T ss_dssp             TTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEEECTT
T ss_pred             CCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecC-CCCeeeEeeecC
Confidence            3455566666677888899999998 666554432   46667777777766667788889999999 8887776554 3


Q ss_pred             Cc--EEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424          350 GK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       350 g~--i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                      +.  +..+.....................+++++..++.. ..+|...+|..............      .........|
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~  178 (269)
T d2hqsa1         105 GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW------EGSQNQDADV  178 (269)
T ss_dssp             SSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC------SSSEEEEEEE
T ss_pred             CccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeec------cccccccccc
Confidence            32  334444445555555555666666778877755554 44554444444322222211111      1245677899


Q ss_pred             cCCCCcEEEEEECCCeEEEE--ECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeC---CccEEEEeCCCCCcCCCccc
Q 006424          427 SRDESQRIMITSEDSKLRIL--DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---DCRVYVWNYDELCFPSSKQK  501 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iw--d~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~---dg~I~iwd~~~~~~~~~~~~  501 (645)
                      +|++..++......+...+|  +.......  ............|||||++|+..+.   ...|++++++++....    
T Consensus       179 spdg~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~----  252 (269)
T d2hqsa1         179 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR----  252 (269)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE----
T ss_pred             ccccceeEEEeecCCceeeeEeecccccce--EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----
Confidence            99985455555555555554  44433222  2234556778899999999876553   3578999998763211    


Q ss_pred             CCcceeeeeecCCcEEEEecCC
Q 006424          502 NSVRSCEHFFSEGVSVAVQWPG  523 (645)
Q Consensus       502 ~~~~~~~~~~~~g~~~~v~~s~  523 (645)
                             ....++.+...+|+|
T Consensus       253 -------lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         253 -------LPATDGQVKFPAWSP  267 (269)
T ss_dssp             -------CCCSSSEEEEEEECC
T ss_pred             -------EeCCCCcEEeEEeCC
Confidence                   122345566777887

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.02  E-value=8.4e-08  Score=92.96  Aligned_cols=226  Identities=12%  Similarity=0.084  Sum_probs=152.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      .+..++++|||+++++...+++|..|+...                                               ...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-----------------------------------------------~~~   61 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-----------------------------------------------NQQ   61 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-----------------------------------------------CEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-----------------------------------------------CEE
Confidence            478899999999999999999888877543                                               123


Q ss_pred             eeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCC--eEEE--EecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424          282 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  356 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~--~~~~--~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd  356 (645)
                      .+......+.+++|++++ .+++...++.+..|+....  ....  ..........+++.+ +++++++.+.++.+..+|
T Consensus        62 ~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~  140 (302)
T d2p4oa1          62 IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLID  140 (302)
T ss_dssp             EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc-CCCEEeeccccccceeee
Confidence            344456778999999998 6666777788888876432  2222  223556788999999 888888888889999999


Q ss_pred             CCCCcEEEeec-----------cCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEE
Q 006424          357 VCEKRVVDWAD-----------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ  425 (645)
Q Consensus       357 ~~~~~~~~~~~-----------~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  425 (645)
                      ..++.......           .......+.++. +..+++.+..+.|..++...............     ......++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~pdgia  214 (302)
T d2p4oa1         141 VVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-----QTNIDDFA  214 (302)
T ss_dssp             TTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-----SCCCSSEE
T ss_pred             ccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccC-----CCCCcceE
Confidence            88765433211           112345555543 33455556778888888775543222111111     23456799


Q ss_pred             EcCCCCcEEEEEECCCeEEEEECCcceeeE-eecCCCCCeEEEEE---ecCCCEEEEEeCC
Q 006424          426 FSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASF---TTTGKHIISIGDD  482 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~i~~v~~---sp~~~~l~t~s~d  482 (645)
                      +.++| .++++...++.|..++.......+ .....-...++++|   ++|++.|+.++..
T Consensus       215 ~d~dG-~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         215 FDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ECCCC-CEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            99998 788888889999999866433333 22334456889999   6788888766543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.01  E-value=3e-07  Score=89.35  Aligned_cols=200  Identities=11%  Similarity=0.088  Sum_probs=127.4

Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec-CC----CcEEEEEEeeCCCCEEEEEeC--------------
Q 006424          289 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HH----NYVTCVQFNPIDDNYFISGSI--------------  348 (645)
Q Consensus       289 ~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~~----~~v~~l~~~p~~~~~l~s~s~--------------  348 (645)
                      .-..+.|.+++ .++.+...+.|...+.+.+....... ..    ...+.+++.+ ++++.++-..              
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceecc
Confidence            35678999886 77888777788888887554332221 11    1357789999 8888776432              


Q ss_pred             -CCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCC----EEEE-EecCCeEEEEEecCCceeeeEEeeccccccCCCCeE
Q 006424          349 -DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK----GFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT  422 (645)
Q Consensus       349 -dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~----~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  422 (645)
                       +|.|..++.. ++.......-...+.++|+|+++    .|++ -+..+.|..||+...........+............
T Consensus       151 ~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         151 KFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             SCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             CCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence             2345555543 34444444444567899999765    4444 466788999988654332221111111111123456


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEEECCcc--eeeEeecCCCCCeEEEEEecCCCE-EEEEeCCccEEEEeCCCC
Q 006424          423 GIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKH-IISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       423 ~i~~s~~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~~~~-l~t~s~dg~I~iwd~~~~  493 (645)
                      .+++.++| +++++....+.|.+||....  ...+..  .....++++|.|+++. .+|.+.+|+|+..++...
T Consensus       230 GiavD~~G-nlyVa~~~~g~I~~~dp~~g~~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         230 GMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             eeEEecCC-cEEEEEcCCCEEEEEeCCCCEEEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            89999998 77788888899999996532  233333  4457889999999974 466667888888887643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.99  E-value=4.6e-07  Score=86.42  Aligned_cols=242  Identities=10%  Similarity=0.150  Sum_probs=158.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      .-..++++++|+++++-..+..|++||.+. ..... +...                                  ..   
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~-~~~~----------------------------------~~---   64 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQ-FGEC----------------------------------GK---   64 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEE-ECCB----------------------------------SS---
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEE-eccc----------------------------------CC---
Confidence            357899999999888877888999998653 21111 0000                                  00   


Q ss_pred             eeccCccCeEEEEEcCC-C-eEEE-EeCCCcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006424          282 ELHGHKGDVLDLAWSNS-N-YLLS-CSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG  356 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~-~-~l~s-~s~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd  356 (645)
                       -.+....-..+++.++ + .+++ .+.++.|..++.. +.....+.  .......+++.+ +++++++....+.+.+++
T Consensus        65 -~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~  141 (279)
T d1q7fa_          65 -RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFD  141 (279)
T ss_dssp             -STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEEC
T ss_pred             -CcccccccccccccccccccceeccCCcccccccccc-ccceeecCCCcccccceecccc-CCcEEEEeeccceeeEec
Confidence             0011112333444433 3 3333 3445577777764 66666664  445678899998 888888877778899998


Q ss_pred             CCCCcEEEe--eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424          357 VCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  434 (645)
Q Consensus       357 ~~~~~~~~~--~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l  434 (645)
                      .....+..+  ..+......+++.++++.+++....+.|++||......  ..+...    ........+++.++| +++
T Consensus       142 ~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~--~~~g~~----g~~~~P~giavD~~G-~i~  214 (279)
T d1q7fa_         142 QNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL--RQIGGE----GITNYPIGVGINSNG-EIL  214 (279)
T ss_dssp             TTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE--EEESCT----TTSCSEEEEEECTTC-CEE
T ss_pred             cCCceeecccccccccccceeeeccceeEEeeeccccceeeeecCCcee--eeeccc----ccccCCcccccccCC-eEE
Confidence            765544433  33456678899999998888888889999999875432  222111    123457899999998 666


Q ss_pred             EEEEC-CCeEEEEECC-cceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          435 MITSE-DSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       435 ~~~s~-dg~I~iwd~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      ++-.. ++.|.+++.. +....+...........+++.|+|.+++ ++.+.+|++|.+...
T Consensus       215 Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         215 IADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             EEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence            65443 4579999855 3344454444455688999999997655 457899999998765

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.91  E-value=3.3e-08  Score=98.67  Aligned_cols=287  Identities=8%  Similarity=-0.034  Sum_probs=156.1

Q ss_pred             eEEEEeC--CCcEEEE--ecCCCeEE--EE--ecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CcEEEe--ecc
Q 006424          300 YLLSCSM--DKTVRMW--QVGCNQCL--NV--FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDW--ADV  368 (645)
Q Consensus       300 ~l~s~s~--dg~I~iw--d~~~~~~~--~~--~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~~~--~~~  368 (645)
                      .|+.|++  .+.|..+  |.++++..  ..  ......+..|+|+| ++++|+++.. +.+..|.+.. +.....  ...
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~-d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~   81 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH-ERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT-TSSEEEEEEB-TEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcC-CCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecC
Confidence            3556654  4456554  44455432  22  22455567899999 8998888764 5677776653 223222  223


Q ss_pred             CCCeEEEEEccCCCEEEEEe---cCCeEEEEEecCCceeeeEEe----------eccccccCCCCeEEEEEcCCCCcEEE
Q 006424          369 RDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVD----------FHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       369 ~~~v~~l~~sp~g~~l~~g~---~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      ......+.++++++.+++..   ..+.+..+.+...........          ...........+.++.|+|+| ++++
T Consensus        82 ~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG-~~l~  160 (365)
T d1jofa_          82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLY  160 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEE
T ss_pred             CCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCC-CEEE
Confidence            44566778888988544332   245555554432211111000          001111123457899999998 5555


Q ss_pred             EEE-CCCeEEEEECCcc-----eeeEeecCCCCCeEEEEEecCCCEEEEEe-CCccEEEEeCCCCCcCCCcccC------
Q 006424          436 ITS-EDSKLRILDGVDV-----IHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQKN------  502 (645)
Q Consensus       436 ~~s-~dg~I~iwd~~~~-----~~~~~~~~~~~~i~~v~~sp~~~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~------  502 (645)
                      +++ ....|.+|+....     ...............++|+|+++++++.. .+++|.+|+++...........      
T Consensus       161 v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~  240 (365)
T d1jofa_         161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP  240 (365)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred             EeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccc
Confidence            554 4568888875421     11222233456789999999999886665 5789999999766422110000      


Q ss_pred             ---CcceeeeeecCCcEEEEecCCCCccccccCCC--C-ccccCccccccc--------cCCccCCCCccccCccccC-C
Q 006424          503 ---SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS--S-LRDCSQKWDNLE--------TAPWIRDSERFSLGSWFSN-D  567 (645)
Q Consensus       503 ---~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~~~--~-~~~~~~~w~~~~--------~~~~~~~~~~~~~~~~fs~-d  567 (645)
                         .......+........+.++|+|.+|+.....  . ....+..+....        .............+++|+| +
T Consensus       241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~  320 (365)
T d1jofa_         241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS  320 (365)
T ss_dssp             TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred             ccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCC
Confidence               00000011112233466778888887754321  1 011111111111        0011122344567789998 8


Q ss_pred             CCCCcCCCCCCCcCCCCCCccC
Q 006424          568 GPCRGSATWPAEKLPLWDVTID  589 (645)
Q Consensus       568 g~~l~s~s~~d~~i~iWd~~~~  589 (645)
                      |++++.+...++.|.+|++...
T Consensus       321 G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         321 DEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTEEEEECSSSCEEEEEEEETT
T ss_pred             CCEEEEEeCCCCeEEEEEEeCC
Confidence            9988777776889999986543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=3.4e-07  Score=86.65  Aligned_cols=204  Identities=11%  Similarity=0.082  Sum_probs=126.8

Q ss_pred             cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC---cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEE
Q 006424          309 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI  385 (645)
Q Consensus       309 ~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~  385 (645)
                      .|.|.|.+.........+...+...+|+| ||+.||......   .+.+.+..++.......+........|+|+|+.++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECC-CCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            46677776556666666778889999999 999998776543   47888888888888888888999999999999888


Q ss_pred             EEec-CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEE--EECCcceeeEeecCCCC
Q 006424          386 VGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI--LDGVDVIHKFKGLPKSG  462 (645)
Q Consensus       386 ~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~i--wd~~~~~~~~~~~~~~~  462 (645)
                      .... ++...++............. .     .........+++++...+++...++...+  .+...... ........
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~  171 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQIRQVT-D-----GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGS  171 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEECC-C-----CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSS
T ss_pred             EeeecCCccceeecccccccceeee-e-----ccccccccccccccccceecccccCCceEeeeecccccc-eeeecccc
Confidence            7654 33334433333222111111 1     12344556677777556666666665444  45443222 22222455


Q ss_pred             CeEEEEEecCCCEEEEEeCC-ccEEE--EeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccC
Q 006424          463 SQMSASFTTTGKHIISIGDD-CRVYV--WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLC  532 (645)
Q Consensus       463 ~i~~v~~sp~~~~l~t~s~d-g~I~i--wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~  532 (645)
                      ......|+|+++.++..+.+ +...+  .+...+.....            ...+......|+|||..|+-..
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL------------SSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC------------CCSSSCEEEEECTTSSEEEEEE
T ss_pred             cccccccccccceeEEEeecCCceeeeEeecccccceEe------------ecCccccceEECCCCCEEEEEE
Confidence            66778999999998887654 34444  44444322111            1122334556888888776443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.88  E-value=3e-07  Score=88.89  Aligned_cols=233  Identities=9%  Similarity=-0.051  Sum_probs=152.6

Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC--CcEEEe
Q 006424          289 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--KRVVDW  365 (645)
Q Consensus       289 ~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~--~~~~~~  365 (645)
                      .+..++++|+| ++++...+++|..||.. +...........+.+++|.| +++++++...++.+..++...  +....+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeec
Confidence            57789999998 66677778999888865 44444455777899999999 999999888888888887643  333332


Q ss_pred             --eccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeecccc---ccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424          366 --ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK---KTSGNKITGIQFSRDESQRIMITSED  440 (645)
Q Consensus       366 --~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~i~~i~~s~~g~~~l~~~s~d  440 (645)
                        .......+.+.+.++|+++++.+.++.+..++.................   .........+.+..+  .++++.+..
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~--~l~~~~~~~  184 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN--FLYVSNTEK  184 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT--EEEEEETTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC--ceeeecCCC
Confidence              3345568899999999988888888888888887665433221111110   111234556666543  677788888


Q ss_pred             CeEEEEECCccee--eEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCcCCCcccCCcceeeeeecCCcEEE
Q 006424          441 SKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVA  518 (645)
Q Consensus       441 g~I~iwd~~~~~~--~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  518 (645)
                      +.|+.++......  .............++++++|++.++...+++|..++.+.........         -.+-....+
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~---------~~~~~~pt~  255 (302)
T d2p4oa1         185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQA---------EQGVIGSTA  255 (302)
T ss_dssp             TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECG---------GGTCTTEEE
T ss_pred             CeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEec---------CCCCCCceE
Confidence            9999988653211  11111123345679999999988888889999999876431111000         001122457


Q ss_pred             Eec---CCCCccccccCCC
Q 006424          519 VQW---PGIGTEQKSLCSS  534 (645)
Q Consensus       519 v~~---s~~~~~l~~~~~~  534 (645)
                      ++|   ++|+..|+.....
T Consensus       256 vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         256 VAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEECCSTTTTTEEEEEECT
T ss_pred             EEEcCCCCCCCEEEEECCC
Confidence            777   5677777755443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.86  E-value=4.1e-06  Score=81.32  Aligned_cols=233  Identities=10%  Similarity=0.079  Sum_probs=147.6

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCce
Q 006424          202 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ  281 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (645)
                      ....++|.++|++.++-...+.|..|+..+..                                             ...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~---------------------------------------------~~~   75 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKE---------------------------------------------IKR   75 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCC---------------------------------------------EEE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCe---------------------------------------------EEE
Confidence            45689999999977777788888888776521                                             122


Q ss_pred             eeccCccCeEEEEEcCCCeEEEEeC-----CCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeC-----
Q 006424          282 ELHGHKGDVLDLAWSNSNYLLSCSM-----DKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSI-----  348 (645)
Q Consensus       282 ~l~~h~~~V~~l~~s~~~~l~s~s~-----dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s~s~-----  348 (645)
                      .+.........++++++|.|+.+..     .+.+...+...+.......   .......+++.+ ++++.++...     
T Consensus        76 ~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~  154 (319)
T d2dg1a1          76 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTN  154 (319)
T ss_dssp             EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTB
T ss_pred             EEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe-ccceeeccccccccc
Confidence            2233445678899999985555432     2335555555554444333   234578899999 8887666432     


Q ss_pred             -CCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEEeec-cccccCCCCeEEEE
Q 006424          349 -DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFH-DRKKTSGNKITGIQ  425 (645)
Q Consensus       349 -dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~i~~i~  425 (645)
                       .+.+..++...+........-...+.++|+|+++.|+++ +..+.|..|++............. ............++
T Consensus       155 ~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~  234 (319)
T d2dg1a1         155 PLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCC  234 (319)
T ss_dssp             CCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEE
T ss_pred             CcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeee
Confidence             234666666665555544444567889999999977655 557899999987543222211110 00000112356799


Q ss_pred             EcCCCCcEEEEEECCCeEEEEECC-cceeeEeec----CCCCCeEEEEEecCCCEEEEEeC
Q 006424          426 FSRDESQRIMITSEDSKLRILDGV-DVIHKFKGL----PKSGSQMSASFTTTGKHIISIGD  481 (645)
Q Consensus       426 ~s~~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~----~~~~~i~~v~~sp~~~~l~t~s~  481 (645)
                      +.++| ++.++....+.|.++|.. +.+..+...    .+...+++++|.+++..+++.+.
T Consensus       235 vD~~G-~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         235 IDSDD-NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EBTTC-CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EcCCC-CEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            99998 788888889999999954 333334332    23345789999998877766654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.85  E-value=3.2e-06  Score=83.78  Aligned_cols=166  Identities=10%  Similarity=0.059  Sum_probs=104.7

Q ss_pred             CCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEeCCC-CcEEE-----eeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEE
Q 006424          326 HHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCE-KRVVD-----WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYK  397 (645)
Q Consensus       326 ~~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~-~~~~~-----~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd  397 (645)
                      ....+.++.|+| +++++++++. ...|.+|+... +....     ..........+.|+|+++++++.. .++.|.+|+
T Consensus       143 ~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~  221 (365)
T d1jofa_         143 ENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             TTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence            334578999999 9998888764 35788887654 33221     223356789999999999887665 578999999


Q ss_pred             ecCCceeee----EEeecc--------ccccCCCCeEEEEEcCCCCcEEEEEEC-C-----CeEEEEECCcc--ee----
Q 006424          398 ASGNDLKLE----KVDFHD--------RKKTSGNKITGIQFSRDESQRIMITSE-D-----SKLRILDGVDV--IH----  453 (645)
Q Consensus       398 ~~~~~~~~~----~~~~~~--------~~~~~~~~i~~i~~s~~g~~~l~~~s~-d-----g~I~iwd~~~~--~~----  453 (645)
                      +........    ......        ...........+.++|+| ++|+++.+ +     +.|..|+....  ..    
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~  300 (365)
T d1jofa_         222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF  300 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred             ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCCCceeeEeE
Confidence            976543221    111100        000112235678999998 56666543 2     23777775421  11    


Q ss_pred             eEeecCCCCCeEEEEEec-CCCEEEEEe-CCccEEEEeCCCC
Q 006424          454 KFKGLPKSGSQMSASFTT-TGKHIISIG-DDCRVYVWNYDEL  493 (645)
Q Consensus       454 ~~~~~~~~~~i~~v~~sp-~~~~l~t~s-~dg~I~iwd~~~~  493 (645)
                      ............+++++| +|++|+++. .++.|.+|+++..
T Consensus       301 ~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         301 LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            111122334567799998 799887765 6799999998654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=3.9e-07  Score=85.96  Aligned_cols=197  Identities=8%  Similarity=0.030  Sum_probs=130.5

Q ss_pred             cCeEEEEEcCCCe-EEE-EeCCCcEEEEecCCCeE-EEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEE
Q 006424          288 GDVLDLAWSNSNY-LLS-CSMDKTVRMWQVGCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD  364 (645)
Q Consensus       288 ~~V~~l~~s~~~~-l~s-~s~dg~I~iwd~~~~~~-~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~  364 (645)
                      ..-..++++++|. +++ .+..+.+..++...... ............+++++ +++++++....+.+++++-.+.....
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceeee
Confidence            3457899998873 333 34556777776653322 22223334567889998 88888777766677776665555554


Q ss_pred             eeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEE
Q 006424          365 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR  444 (645)
Q Consensus       365 ~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~  444 (645)
                      ..........+++.++++++++-..+..+..++.........  ....     .....++++.++| .++++...++.|.
T Consensus        93 ~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~-----~~~p~~i~~~~~g-~~~v~~~~~~~i~  164 (260)
T d1rwia_          93 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTG-----LNDPDGVAVDNSG-NVYVTDTDNNRVV  164 (260)
T ss_dssp             CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC--CCCS-----CCSCCEEEECTTC-CEEEEEGGGTEEE
T ss_pred             eeeeeeecccccccccceeEeeccccccccccccccceeeee--eecc-----cCCcceeeecCCC-CEeeecccccccc
Confidence            444456788999999998877766667777777655432211  1111     1345789999997 6778878888999


Q ss_pred             EEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          445 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       445 iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .+|...................++++++|+++++....+.|..++....
T Consensus       165 ~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         165 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             ccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            9997644333333334556789999999999888888888998876654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.53  E-value=3e-05  Score=74.91  Aligned_cols=197  Identities=12%  Similarity=0.108  Sum_probs=127.7

Q ss_pred             CccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeC----CCcEEEEeCCC
Q 006424          286 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI----DGKVRIWGVCE  359 (645)
Q Consensus       286 h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~----dg~i~vwd~~~  359 (645)
                      ....+..++|.++| .+++-...+.|..|+.+.+.....+ ........+++++ +++++++...    .+.+...+..+
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCC
Confidence            34455789999887 4555567889999998877655544 4556788999999 8887776543    23466666666


Q ss_pred             CcEEEeecc---CCCeEEEEEccCCCEEEEEec------CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          360 KRVVDWADV---RDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       360 ~~~~~~~~~---~~~v~~l~~sp~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      .........   ....+.+.+.++|++.++...      .+.+..++........  +. ..     ....+.++|+|++
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~--~~-~~-----~~~pnGia~s~dg  188 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--II-QN-----ISVANGIALSTDE  188 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EE-EE-----ESSEEEEEECTTS
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEE--Ee-ec-----cceeeeeeecccc
Confidence            655543322   345778999999986555322      1234444444332211  11 11     1345789999998


Q ss_pred             CcEEEEEECCCeEEEEECCcc---eee-----EeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCC
Q 006424          431 SQRIMITSEDSKLRILDGVDV---IHK-----FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD  491 (645)
Q Consensus       431 ~~~l~~~s~dg~I~iwd~~~~---~~~-----~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~  491 (645)
                      ..++++-+..+.|+.|++...   ...     ............++++++|++.++....+.|.+||-+
T Consensus       189 ~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         189 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence            545666677899999986421   111     1111122345789999999998888889999999964

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1e-05  Score=82.76  Aligned_cols=98  Identities=11%  Similarity=0.106  Sum_probs=68.2

Q ss_pred             CeEEEEEcCCC-eEEEE---------eCCCcEEEEecCCCeEEEEec---CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          289 DVLDLAWSNSN-YLLSC---------SMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       289 ~V~~l~~s~~~-~l~s~---------s~dg~I~iwd~~~~~~~~~~~---~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      .+....||||+ +++..         +..+.+.++|+.++.......   ....+....|+| +|+.+|... ++.|.+.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeecc-CCceEEEEe-cceEEEE
Confidence            45667889997 55443         345788999999887654432   334566789999 999888776 6789999


Q ss_pred             eCCCCcEEEeec--cCC-----------------CeEEEEEccCCCEEEEEe
Q 006424          356 GVCEKRVVDWAD--VRD-----------------VISAICYIPDGKGFIVGS  388 (645)
Q Consensus       356 d~~~~~~~~~~~--~~~-----------------~v~~l~~sp~g~~l~~g~  388 (645)
                      +..++...++..  ...                 .-.++-|||||++||...
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            887766544322  111                 124778999999999865

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.50  E-value=6.2e-05  Score=71.68  Aligned_cols=188  Identities=12%  Similarity=0.055  Sum_probs=124.2

Q ss_pred             ccCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeC----CCcEEEEeC
Q 006424          287 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI----DGKVRIWGV  357 (645)
Q Consensus       287 ~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~s~----dg~i~vwd~  357 (645)
                      ...+.++++.+++.|+.++.+ .+..+|..+++......     ....++.+.+.| ++++.++...    .+.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeee
Confidence            456788888888866666665 58899999887654432     223688899999 8887666543    234567777


Q ss_pred             CCCcEEEeeccCCCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCceee--eEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424          358 CEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITGIQFSRDESQRI  434 (645)
Q Consensus       358 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~s~~g~~~l  434 (645)
                      ..++.......-...+.++|+++++.++.+ +..+.|..|++.......  ....+. ...........+++..+| ++.
T Consensus       136 ~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~-~~~~~~g~pdG~~vD~~G-nlW  213 (295)
T d2ghsa1         136 AKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI-DSTGIKGGMDGSVCDAEG-HIW  213 (295)
T ss_dssp             ETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE-ECTTSSSEEEEEEECTTS-CEE
T ss_pred             cCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEe-ccCcccccccceEEcCCC-CEE
Confidence            777766655555567889999999876655 457788888875432211  110010 011123457889999998 777


Q ss_pred             EEEECCCeEEEEECC-cceeeEeecCCCCCeEEEEEe-cCCCEEEEEe
Q 006424          435 MITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFT-TTGKHIISIG  480 (645)
Q Consensus       435 ~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~i~~v~~s-p~~~~l~t~s  480 (645)
                      ++.-..+.|..||.. +....+..  ....+++++|- ++.+.|+..+
T Consensus       214 va~~~~g~V~~~dp~G~~~~~i~l--P~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         214 NARWGEGAVDRYDTDGNHIARYEV--PGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EEEETTTEEEEECTTCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEE
T ss_pred             eeeeCCCceEEecCCCcEeeEecC--CCCceEEEEEeCCCCCEEEEEE
Confidence            777788899999964 33444444  34568999996 6766665443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.48  E-value=7.8e-05  Score=71.70  Aligned_cols=224  Identities=8%  Similarity=0.007  Sum_probs=136.1

Q ss_pred             CeEEEEEcCCCeEEEEeC--------CCcEEEEecCCCeEEEEec-----CCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          289 DVLDLAWSNSNYLLSCSM--------DKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       289 ~V~~l~~s~~~~l~s~s~--------dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      ..-.++|.++|.|+.++.        +++|..||..++.......     .......++|.+ +++.++++...+.|..+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence            345678999885544433        3678889988776544332     123467899999 88888888877789999


Q ss_pred             eCCCCcEEEeecc-C----CCeEEEEEccCCCEEEEEec---------------CCeEEEEEecCCceeeeEEeeccccc
Q 006424          356 GVCEKRVVDWADV-R----DVISAICYIPDGKGFIVGSI---------------TGTCHFYKASGNDLKLEKVDFHDRKK  415 (645)
Q Consensus       356 d~~~~~~~~~~~~-~----~~v~~l~~sp~g~~l~~g~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~  415 (645)
                      |..++........ .    ...+.+.+.++|++.++-..               .|.|..++.... . ..... .    
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~-~-~~~~~-~----  170 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-M-IQVDT-A----  170 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-E-EEEEE-E----
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc-e-eEeeC-C----
Confidence            9876654432221 1    13578999999987766322               233444433322 1 11111 1    


Q ss_pred             cCCCCeEEEEEcCCCC----cEEEEEECCCeEEEEECCcc--e---eeEeec--CCCCCeEEEEEecCCCEEEEEeCCcc
Q 006424          416 TSGNKITGIQFSRDES----QRIMITSEDSKLRILDGVDV--I---HKFKGL--PKSGSQMSASFTTTGKHIISIGDDCR  484 (645)
Q Consensus       416 ~~~~~i~~i~~s~~g~----~~l~~~s~dg~I~iwd~~~~--~---~~~~~~--~~~~~i~~v~~sp~~~~l~t~s~dg~  484 (645)
                        ....+.++|+|++.    .++++-+..+.|..||+...  .   ..+...  ......-.++++.+|++.++....+.
T Consensus       171 --~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~  248 (314)
T d1pjxa_         171 --FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             --ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             --cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE
Confidence              12346789988752    24555567889999885421  1   111111  12234568999999999888888899


Q ss_pred             EEEEeCCCCCcCCCcccCCcceeeeeecCCcEEEEecCCCCccccccC
Q 006424          485 VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLC  532 (645)
Q Consensus       485 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~s~~~~~l~~~~  532 (645)
                      |.+||.+.+.......          .+......++|.|++..|+...
T Consensus       249 I~~~dp~~g~~~~~i~----------~p~~~~t~~afg~d~~~lyVt~  286 (314)
T d1pjxa_         249 IEVFGPDGGQPKMRIR----------CPFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             EEEECTTCBSCSEEEE----------CSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEeCCCCEEEEEEE----------CCCCCEEEEEEeCCCCEEEEEE
Confidence            9999987653221111          1223355677888876666443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.44  E-value=6.1e-05  Score=71.13  Aligned_cols=225  Identities=10%  Similarity=0.138  Sum_probs=142.2

Q ss_pred             CeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEecC-------CCcEEEEEEeeCCCCEEEEE-eCCCcEEEEeCCC
Q 006424          289 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFISG-SIDGKVRIWGVCE  359 (645)
Q Consensus       289 ~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~-------~~~v~~l~~~p~~~~~l~s~-s~dg~i~vwd~~~  359 (645)
                      ....+++++++ .+++-..++.|++||.+ ++.+..+..       ......+++.+..+..+++. +.++.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            45789999887 55555667889999975 777666631       12345566665234444443 3455777887655


Q ss_pred             CcEEEee-ccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424          360 KRVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS  438 (645)
Q Consensus       360 ~~~~~~~-~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s  438 (645)
                      .....+. ........+++.++|+.+++....+.+.+++.....  ...+...    .+......+++.+++ ..+++..
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~--~~~~g~~----~~~~~~~~i~~d~~g-~i~v~d~  175 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV--LHKFGCS----KHLEFPNGVVVNDKQ-EIFISDN  175 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE--EEEEECT----TTCSSEEEEEECSSS-EEEEEEG
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCce--eeccccc----ccccccceeeeccce-eEEeeec
Confidence            4444432 334567889999999988887777888888765432  2222211    123567889999997 7888888


Q ss_pred             CCCeEEEEECCc-ceeeEeecCCCCCeEEEEEecCCCEEEEEeC-CccEEEEeCCCCCcCCCcccCCcceeeeeecCCcE
Q 006424          439 EDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS  516 (645)
Q Consensus       439 ~dg~I~iwd~~~-~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~  516 (645)
                      ..+.|++||... ....+..........+++++++|+.+++-+. +++|.+|+.+ ++....        ...-...+..
T Consensus       176 ~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~--------~~~~~~~~~p  246 (279)
T d1q7fa_         176 RAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISA--------LESKVKHAQC  246 (279)
T ss_dssp             GGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEE--------EEESSCCSCE
T ss_pred             cccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEE--------EeCCCCCCCE
Confidence            889999999663 3333333334556789999999998877543 5579999854 321110        0000011234


Q ss_pred             EEEecCCCCccccc
Q 006424          517 VAVQWPGIGTEQKS  530 (645)
Q Consensus       517 ~~v~~s~~~~~l~~  530 (645)
                      ..++..++|..+++
T Consensus       247 ~~vav~~dG~l~V~  260 (279)
T d1q7fa_         247 FDVALMDDGSVVLA  260 (279)
T ss_dssp             EEEEEETTTEEEEE
T ss_pred             eEEEEeCCCcEEEE
Confidence            57777888875543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=0.00022  Score=72.59  Aligned_cols=279  Identities=10%  Similarity=0.039  Sum_probs=143.6

Q ss_pred             cEEEEEECCCCCEEEEEeC---------CCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCc
Q 006424          202 CIWTLKFSPDGRYLASGGE---------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV  272 (645)
Q Consensus       202 ~V~~l~fspdg~~L~sgs~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (645)
                      .+....|||||++++.+..         .+.+.++|+.++...                                     
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~-------------------------------------  104 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-------------------------------------  104 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-------------------------------------
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee-------------------------------------
Confidence            4567789999998887643         466778888763211                                     


Q ss_pred             eeccCCCceeeccCccCeEEEEEcCCC-eEEEEeCCCcEEEEecCCCeEEEEec--CCCc-----------------EEE
Q 006424          273 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNY-----------------VTC  332 (645)
Q Consensus       273 ~~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~-----------------v~~  332 (645)
                            .+.........+....|||+| .++-.. ++.|.+.+...+..++...  ....                 -.+
T Consensus       105 ------~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a  177 (465)
T d1xfda1         105 ------SLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (465)
T ss_dssp             ------ECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             ------eccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccce
Confidence                  111112233445567899998 555543 5778888887766554432  1111                 246


Q ss_pred             EEEeeCCCCEEEEEeCC-Cc---------------------------------EEEEeCCCCcEEEe-------eccCCC
Q 006424          333 VQFNPIDDNYFISGSID-GK---------------------------------VRIWGVCEKRVVDW-------ADVRDV  371 (645)
Q Consensus       333 l~~~p~~~~~l~s~s~d-g~---------------------------------i~vwd~~~~~~~~~-------~~~~~~  371 (645)
                      +.|+| |++.||....| ..                                 +.++|+.++.....       ......
T Consensus       178 ~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y  256 (465)
T d1xfda1         178 HWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY  256 (465)
T ss_dssp             EEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred             EEECC-CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccce
Confidence            78999 99998876532 22                                 33444433221110       011223


Q ss_pred             eEEEEEccCCCEEEEEec-C---CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE-EE-CCC--eE
Q 006424          372 ISAICYIPDGKGFIVGSI-T---GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI-TS-EDS--KL  443 (645)
Q Consensus       372 v~~l~~sp~g~~l~~g~~-d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~-~s-~dg--~I  443 (645)
                      +..+.|+|+++.++.... +   ..+.++|..++.............  ....-....|+++|..+++. .+ .+|  .+
T Consensus       257 ~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~w--v~~~~~~p~~~~dg~~~~fi~~se~~g~~~l  334 (465)
T d1xfda1         257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAW--LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF  334 (465)
T ss_dssp             EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSC--CCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred             eeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCce--EeccCCceeEccCCCeeEEEEeeeecccCce
Confidence            677899999886655432 2   257788888776543221111100  00111345789998654332 22 333  34


Q ss_pred             EEEECC------cceeeEeecCCCCCeEEE-EEecCCCEEE-EEeCC--ccEEEEeC--CCCCcCCCcccCCcceeeeee
Q 006424          444 RILDGV------DVIHKFKGLPKSGSQMSA-SFTTTGKHII-SIGDD--CRVYVWNY--DELCFPSSKQKNSVRSCEHFF  511 (645)
Q Consensus       444 ~iwd~~------~~~~~~~~~~~~~~i~~v-~~sp~~~~l~-t~s~d--g~I~iwd~--~~~~~~~~~~~~~~~~~~~~~  511 (645)
                      +..++.      ............-.|..+ .|+++++.|. ++..+  +.-++|.+  ++..........       ..
T Consensus       335 y~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~-------~~  407 (465)
T d1xfda1         335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD-------LV  407 (465)
T ss_dssp             EEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT-------SS
T ss_pred             EEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccc-------cC
Confidence            333311      000001111123345554 6888887765 44433  23345544  433211111000       11


Q ss_pred             cCCcEEEEecCCCCccccccCCC
Q 006424          512 SEGVSVAVQWPGIGTEQKSLCSS  534 (645)
Q Consensus       512 ~~g~~~~v~~s~~~~~l~~~~~~  534 (645)
                      .++....+.|+|++.+++..+++
T Consensus       408 ~~~~~~~~~~S~~~~y~v~~~s~  430 (465)
T d1xfda1         408 ENCTYFSASFSHSMDFFLLKCEG  430 (465)
T ss_dssp             SSCCCCEEEECTTSSEEEEECCS
T ss_pred             CCCCEEEEEECCCCCEEEEEeec
Confidence            22334577788888888765554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.15  E-value=0.0024  Score=60.25  Aligned_cols=189  Identities=13%  Similarity=0.067  Sum_probs=127.1

Q ss_pred             EEEEcC-CCeEE-EEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeecc-
Q 006424          292 DLAWSN-SNYLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-  368 (645)
Q Consensus       292 ~l~~s~-~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-  368 (645)
                      +..|++ ++.|+ +=-..+.|.-||..+++. ..+.....+.++++.+ +++++++ +.+ .+..+|..+++...+... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            345775 45444 434668899999988865 3555667789999988 7766654 444 599999999887664332 


Q ss_pred             ----CCCeEEEEEccCCCEEEEEec----CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424          369 ----RDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  440 (645)
Q Consensus       369 ----~~~v~~l~~sp~g~~l~~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d  440 (645)
                          ...++.+.+.|+|++.++...    .+.-.+|.+..+......   ...     .....+.|++++..++++-+..
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~---~~~-----~~~Ng~~~s~d~~~l~~~dt~~  169 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF---ADI-----SIPNSICFSPDGTTGYFVDTKV  169 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE---EEE-----SSEEEEEECTTSCEEEEEETTT
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe---ecc-----CCcceeeecCCCceEEEeeccc
Confidence                235788999999986665432    234566766655432221   111     3467899999985566777778


Q ss_pred             CeEEEEECCc-------ceeeE-eecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          441 SKLRILDGVD-------VIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       441 g~I~iwd~~~-------~~~~~-~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      +.|+.++...       ....+ ......+...+++++.+|++.++.-..+.|..||-+.
T Consensus       170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G  229 (295)
T d2ghsa1         170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG  229 (295)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred             ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCC
Confidence            9999998541       11111 2222345678899999999888877788999999643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.09  E-value=0.00018  Score=67.35  Aligned_cols=224  Identities=12%  Similarity=0.068  Sum_probs=121.6

Q ss_pred             EECCC--CCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec
Q 006424          207 KFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  284 (645)
Q Consensus       207 ~fspd--g~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  284 (645)
                      ..|||  |+.+|-.+ +|.|.+.|+.++                                              ..+.+.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g----------------------------------------------~~~~Lt   37 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSG----------------------------------------------STRKIV   37 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTC----------------------------------------------CEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCC----------------------------------------------CEEEEe
Confidence            35788  99888664 456877788753                                              234566


Q ss_pred             cCccCeEEEEEcCCC-eEEEEe-CCC-----cEEEEecCCCeEEEEec-------CCCcEEEEEEeeCCCCEEEEEeCC-
Q 006424          285 GHKGDVLDLAWSNSN-YLLSCS-MDK-----TVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNYFISGSID-  349 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~-~l~s~s-~dg-----~I~iwd~~~~~~~~~~~-------~~~~v~~l~~~p~~~~~l~s~s~d-  349 (645)
                      .+.+.+...+||||| .|+... .++     .|.+++..+++......       .........|+| +++.++..... 
T Consensus        38 ~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~  116 (281)
T d1k32a2          38 SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQ  116 (281)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTS
T ss_pred             cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCC-CCCEEEEEEccC
Confidence            677788899999998 566432 222     47777888787665432       223456788999 89888775432 


Q ss_pred             -----CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCE-EEEEecCC-----------eEEEEEecCCceeeeEEeecc
Q 006424          350 -----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG-FIVGSITG-----------TCHFYKASGNDLKLEKVDFHD  412 (645)
Q Consensus       350 -----g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~-l~~g~~dg-----------~i~iwd~~~~~~~~~~~~~~~  412 (645)
                           ..+...+...+........  ..... +.+++.. ++......           ..............  . .. 
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~-  189 (281)
T d1k32a2         117 PFSSMTCLYRVENDGINFVPLNLG--PATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK--I-VD-  189 (281)
T ss_dssp             SSTTCCEEEEEEGGGTEEEECCSC--SCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE--E-EC-
T ss_pred             CCccceeeeeecCCCceeEEecCC--cccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccceee--c-cC-
Confidence                 2345555555554433222  22223 3344433 33322111           11111111111110  0 00 


Q ss_pred             ccccCCCCeEEEEEcCCCCcEEEEEECC--CeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeC
Q 006424          413 RKKTSGNKITGIQFSRDESQRIMITSED--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY  490 (645)
Q Consensus       413 ~~~~~~~~i~~i~~s~~g~~~l~~~s~d--g~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~  490 (645)
                          .........++++  ..+.....+  ..|.++|+...............  ...|+|||+.|+.. .++.|+++|+
T Consensus       190 ----~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~--~~~~SpDG~~I~f~-~~~~l~~~d~  260 (281)
T d1k32a2         190 ----MSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY--PRHLNTDGRRILFS-KGGSIYIFNP  260 (281)
T ss_dssp             ----CSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSC--EEEEEESSSCEEEE-ETTEEEEECT
T ss_pred             ----Cccccceeeeecc--ccceecccccccceEEEeCCCCceEEeecCCCcc--cccCcCCCCEEEEE-eCCEEEEEEC
Confidence                1133445556655  344444444  35667776533222111112222  34689999998874 4788999999


Q ss_pred             CCCC
Q 006424          491 DELC  494 (645)
Q Consensus       491 ~~~~  494 (645)
                      ++++
T Consensus       261 ~~g~  264 (281)
T d1k32a2         261 DTEK  264 (281)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            8875

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.92  E-value=2.9e-05  Score=73.05  Aligned_cols=99  Identities=16%  Similarity=0.237  Sum_probs=65.9

Q ss_pred             EEeeCC--CCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEec-CC-----eEEEEEecCCceee
Q 006424          334 QFNPID--DNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG-----TCHFYKASGNDLKL  405 (645)
Q Consensus       334 ~~~p~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~-dg-----~i~iwd~~~~~~~~  405 (645)
                      ..+| +  |+.++..+ ++.|.+.|+.+++...+..+...+...+|||||+.||.... ++     .|.+++..+.....
T Consensus         5 ~~sP-di~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNP-DIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEE-EEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCC-CCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            3578 7  88887765 46799999999999888888888999999999999886542 22     35666665554321


Q ss_pred             eEEeecc-ccccCCCCeEEEEEcCCCCcEEEEE
Q 006424          406 EKVDFHD-RKKTSGNKITGIQFSRDESQRIMIT  437 (645)
Q Consensus       406 ~~~~~~~-~~~~~~~~i~~i~~s~~g~~~l~~~  437 (645)
                        +.... .............|+|+| +.++..
T Consensus        83 --lt~~~~~~~~~~~~~~~~~~spdg-~~l~~~  112 (281)
T d1k32a2          83 --ITYFSGKSTGRRMFTDVAGFDPDG-NLIIST  112 (281)
T ss_dssp             --CCCCCEEEETTEECSEEEEECTTC-CEEEEE
T ss_pred             --eeecCCCccCccccccccccCCCC-CEEEEE
Confidence              11111 000111245678899998 566554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.54  E-value=0.0065  Score=58.63  Aligned_cols=194  Identities=13%  Similarity=0.138  Sum_probs=122.0

Q ss_pred             EEEEcC---CC-eEE-EEeCCCcEEEEecCCCeEEEEe--cCCCcEEEEEEeeC-CCCEEEEEeCCC-------------
Q 006424          292 DLAWSN---SN-YLL-SCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPI-DDNYFISGSIDG-------------  350 (645)
Q Consensus       292 ~l~~s~---~~-~l~-s~s~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~~~p~-~~~~l~s~s~dg-------------  350 (645)
                      .+++..   || +++ .-..+..|.+-|+++.++.+..  .....+..+...+. +..+++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455554   56 444 4557889999999999986654  34556676666430 445666666532             


Q ss_pred             -----cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCC---------------eEEEEEe------------
Q 006424          351 -----KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---------------TCHFYKA------------  398 (645)
Q Consensus       351 -----~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg---------------~i~iwd~------------  398 (645)
                           .+.++|..+.++............+.++++|+++++.+.+.               .+.+++.            
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                 36778998888776555566777899999999999876432               2334443            


Q ss_pred             -----------cCCc--eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeE----------
Q 006424          399 -----------SGND--LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF----------  455 (645)
Q Consensus       399 -----------~~~~--~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~----------  455 (645)
                                 +...  .....+..       ......+.++|||...++++.-+.++.|+|.++....+          
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPV-------pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~  321 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPI-------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  321 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEE-------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGE
T ss_pred             EEeCCceeecccccCCcceeEEEec-------CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccE
Confidence                       2100  00001111       12345688999996666666778999999976322111          


Q ss_pred             ee-cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCC
Q 006424          456 KG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE  492 (645)
Q Consensus       456 ~~-~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~  492 (645)
                      .. ....-....-+|+..|.-..|---|..|.-|++..
T Consensus       322 ~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         322 VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EeecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            11 11233456678988886555555799999999854

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.53  E-value=0.0063  Score=58.72  Aligned_cols=136  Identities=10%  Similarity=0.011  Sum_probs=87.1

Q ss_pred             cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCC--------------------------------------
Q 006424          309 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--------------------------------------  350 (645)
Q Consensus       309 ~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg--------------------------------------  350 (645)
                      .+.+.|.++.+.............+.++| +++++++.+.+.                                      
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeeeCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            36678888888877776566677889999 888888876431                                      


Q ss_pred             cEEEEeCCC---CcEEEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceee-------eEEeeccccccCCC
Q 006424          351 KVRIWGVCE---KRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKL-------EKVDFHDRKKTSGN  419 (645)
Q Consensus       351 ~i~vwd~~~---~~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~  419 (645)
                      .+.+-|.+.   .....+.........+.++|||+++++++ -+.++.++|++.-....       ..+.  . ....+-
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~--~-e~elgl  329 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV--A-EPELGL  329 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE--E-CCBCCS
T ss_pred             CceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE--e-ecccCc
Confidence            233334332   11222333445567889999999988766 47899999986321110       0000  0 011234


Q ss_pred             CeEEEEEcCCCCcEEEEEECCCeEEEEECC
Q 006424          420 KITGIQFSRDESQRIMITSEDSKLRILDGV  449 (645)
Q Consensus       420 ~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~  449 (645)
                      .-..-+|...| .-..+---|..|.-|++.
T Consensus       330 gPLht~fd~~g-~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         330 GPLHTAFDGRG-NAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CEEEEEECTTS-EEEEEETTTTEEEEEEHH
T ss_pred             CccccccCCCc-eEEEEeeccceEEEEecc
Confidence            45667898887 555666679999999964

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.34  E-value=0.041  Score=53.25  Aligned_cols=113  Identities=12%  Similarity=0.136  Sum_probs=67.9

Q ss_pred             eEEEEEcCCC-eEEEEeCC-CcEEEEecCCCeEEEEec--CCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEeCCC
Q 006424          290 VLDLAWSNSN-YLLSCSMD-KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCE  359 (645)
Q Consensus       290 V~~l~~s~~~-~l~s~s~d-g~I~iwd~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~  359 (645)
                      ....++.+++ .++.|+.+ ..+.+||..+......-.  ....-..++..+ ++++++.|+.+      ..+.+||..+
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCC
Confidence            3455677887 45555444 589999998876644322  222223455666 88888888753      3589999988


Q ss_pred             CcEEEeeccCC---------------CeEEEEEccCCCEEEEEecCCeEEEEEecCCce
Q 006424          360 KRVVDWADVRD---------------VISAICYIPDGKGFIVGSITGTCHFYKASGNDL  403 (645)
Q Consensus       360 ~~~~~~~~~~~---------------~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~  403 (645)
                      .+-........               .-..+...++|+.+..+...+.+.+++......
T Consensus       157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            76544321110               011122345677777777777777777766544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.22  E-value=0.074  Score=48.39  Aligned_cols=232  Identities=12%  Similarity=0.170  Sum_probs=144.6

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCceeccCCCceeec
Q 006424          205 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH  284 (645)
Q Consensus       205 ~l~fspdg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  284 (645)
                      +.-.+|..+.||.-+ ..++.++|+++.                                             ..++.+.
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK---------------------------------------------~klks~~  100 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMK---------------------------------------------SKMKAHT  100 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTT---------------------------------------------EEEEEEE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHh---------------------------------------------hhhceEE
Confidence            344577777777655 457999999872                                             2233332


Q ss_pred             cCccCeEEEEEcCCCeEEEEeCCCcEEEEecCC-CeEEEEec-C----CCcEEEEEEeeCCCCEEEEEe-------CCCc
Q 006424          285 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-H----HNYVTCVQFNPIDDNYFISGS-------IDGK  351 (645)
Q Consensus       285 ~h~~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~-~----~~~v~~l~~~p~~~~~l~s~s-------~dg~  351 (645)
                       ...+|..-.|-.+..|+-.+. ..|+-|+++. ..+.+.|. |    +..|.....++ +.+.++..+       -.|.
T Consensus       101 -~~e~VvfWkWis~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~  177 (327)
T d1utca2         101 -MTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGA  177 (327)
T ss_dssp             -CSSCCCEEEESSSSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEE
T ss_pred             -cCCCcEEEEecCCCEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECC-CCCEEEEEeEecCCCceeEE
Confidence             345777788877776555544 5799999953 34566664 2    34566667777 666655433       1367


Q ss_pred             EEEEeCCCCcEEEeeccCCCeEEEEEccCC---CEEEEE---ecCCeEEEEEecCCc---ee--eeEEeeccccccCCCC
Q 006424          352 VRIWGVCEKRVVDWADVRDVISAICYIPDG---KGFIVG---SITGTCHFYKASGND---LK--LEKVDFHDRKKTSGNK  420 (645)
Q Consensus       352 i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g---~~l~~g---~~dg~i~iwd~~~~~---~~--~~~~~~~~~~~~~~~~  420 (645)
                      +.+|..+.+....+.+|......+.+..+.   +.++.+   ...+.+++.++....   .+  .+.....-......+-
T Consensus       178 mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DF  257 (327)
T d1utca2         178 MQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF  257 (327)
T ss_dssp             EEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCC
T ss_pred             EEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCc
Confidence            899999888777777776555444433211   233333   233688999886532   11  1222222222233456


Q ss_pred             eEEEEEcCCCCcEEEEEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEE
Q 006424          421 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY  486 (645)
Q Consensus       421 i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~  486 (645)
                      ..++..++.- ..++.-+.-|.|.+||+.+....+...-....|...+-+.+..=+++...+|.|.
T Consensus       258 Pvamqvs~ky-giiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         258 PVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEEEeeccC-CEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            6788888875 6899999999999999998888887765666666555455444444445566554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.11  Score=47.38  Aligned_cols=202  Identities=9%  Similarity=0.000  Sum_probs=121.7

Q ss_pred             eccCccCeEEEEEcCC-CeEE-EEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006424          283 LHGHKGDVLDLAWSNS-NYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE  359 (645)
Q Consensus       283 l~~h~~~V~~l~~s~~-~~l~-s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~  359 (645)
                      +..+...+.+++|... +.++ +-..++.|+..+++.+....... ....+.++++....+++..+-...+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            3344556788899865 4555 44566788888887555444443 3356889999873444445555677899999987


Q ss_pred             CcEEEeec-cCCCeEEEEEccCCCEEEEEecC-Ce--EEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          360 KRVVDWAD-VRDVISAICYIPDGKGFIVGSIT-GT--CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       360 ~~~~~~~~-~~~~v~~l~~sp~g~~l~~g~~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      .....+.. ....+..++++|...+++..... +.  |.-.++.+....  .+....     -.....+++.+.+..++.
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~--~i~~~~-----~~~P~glaiD~~~~~lYw  183 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR--ILAQDN-----LGLPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE--EEECTT-----CSCEEEEEEETTTTEEEE
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce--eeeeec-----ccccceEEEeecCcEEEE
Confidence            66544333 33678899999977777655432 23  444455443321  111111     245678999887644445


Q ss_pred             EEECCCeEEEEECCcceeeEeecCCCCCeEEEEEecCCCEEEEE-eCCccEEEEeCCCCC
Q 006424          436 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELC  494 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~t~-s~dg~I~iwd~~~~~  494 (645)
                      +-...+.|...+........... ......++++.  +.+|.-. ...+.|...|..+++
T Consensus       184 ~d~~~~~I~~~~~~g~~~~~v~~-~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         184 VDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             EETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred             EeCCCCEEEEEECCCCCeEEEEC-CCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCc
Confidence            55667899999876432222111 22234677775  4445444 456788888887663

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.24  Score=44.95  Aligned_cols=201  Identities=11%  Similarity=-0.015  Sum_probs=118.8

Q ss_pred             CccCeEEEEEcCC-CeEEEE-eCCCcEEEEecCCCe----EEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006424          286 HKGDVLDLAWSNS-NYLLSC-SMDKTVRMWQVGCNQ----CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC  358 (645)
Q Consensus       286 h~~~V~~l~~s~~-~~l~s~-s~dg~I~iwd~~~~~----~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~  358 (645)
                      ....+.+++|++. +.++-. ..++.|.-.+++...    ..... .....+.++++.+..+++..+-...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            4456778899865 455544 455667766664321    11112 2234567888887455555555567789999998


Q ss_pred             CCcEEE-eeccCCCeEEEEEccCCCEEEEEe--cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006424          359 EKRVVD-WADVRDVISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM  435 (645)
Q Consensus       359 ~~~~~~-~~~~~~~v~~l~~sp~g~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~  435 (645)
                      ...... ..........++++|...++....  ..+.|.-.++.+.....  +....     ......+++.+.+..+..
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~--l~~~~-----~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTEN-----IQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EECSS-----CSCEEEEEEETTTTEEEE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec--ccccc-----cceeeEEEeeccccEEEE
Confidence            876544 344456788999999666666554  33456666665543321  11111     245688999987645555


Q ss_pred             EEECCCeEEEEECCc--ceeeEeecCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCC
Q 006424          436 ITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC  494 (645)
Q Consensus       436 ~~s~dg~I~iwd~~~--~~~~~~~~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~  494 (645)
                      +-...+.|...++..  ...............++++. ++....+-..++.|+..+..++.
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCc
Confidence            556678999888653  22233333233456677776 33444444467888888876663

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.50  E-value=0.048  Score=52.76  Aligned_cols=148  Identities=10%  Similarity=0.008  Sum_probs=86.3

Q ss_pred             CCCEEEEEeCCC-----------cEEEEeCCCCcEEE----eeccCCCeEEEEEccCCCEEEEEecC-CeEEEEEecCCc
Q 006424          339 DDNYFISGSIDG-----------KVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGND  402 (645)
Q Consensus       339 ~~~~l~s~s~dg-----------~i~vwd~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~~g~~d-g~i~iwd~~~~~  402 (645)
                      ++++++.|+.+.           .+.+||..++.-..    ...+........+.++|++++.|+.+ ..+.+||..+..
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~  109 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  109 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCc
Confidence            677777776421           36789998765332    22233334566788999999988655 589999998766


Q ss_pred             eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC------CeEEEEECCcceeeEeec--------C-C-----CC
Q 006424          403 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED------SKLRILDGVDVIHKFKGL--------P-K-----SG  462 (645)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d------g~I~iwd~~~~~~~~~~~--------~-~-----~~  462 (645)
                      .... -....     ...-...+..++| .+++.++.+      ..+.+||.....-.....        . +     ..
T Consensus       110 w~~~-~~~~~-----~r~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  182 (387)
T d1k3ia3         110 WIPG-PDMQV-----ARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  182 (387)
T ss_dssp             EEEC-CCCSS-----CCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             cccc-ccccc-----cccccceeeecCC-ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeecc
Confidence            5321 11111     1222356677787 677777643      468899976432111100        0 0     00


Q ss_pred             CeEEEEEecCCCEEEEEeCCccEEEEeCCCC
Q 006424          463 SQMSASFTTTGKHIISIGDDCRVYVWNYDEL  493 (645)
Q Consensus       463 ~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~  493 (645)
                      .-..+...++|+.++.++.++.+.+++....
T Consensus       183 ~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         183 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             ceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence            1111233457788888877787777777655

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.05  E-value=0.5  Score=42.74  Aligned_cols=190  Identities=11%  Similarity=0.121  Sum_probs=117.9

Q ss_pred             EcCCCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCc-EE-Eeecc----
Q 006424          295 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VV-DWADV----  368 (645)
Q Consensus       295 ~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~-~~-~~~~~----  368 (645)
                      .+|...+++--...++.++|+++.+.++.+.....|.--.|-  +.+.|+..+ +..|+-|++.+.. .. .+..|    
T Consensus        70 MhP~~~IiALrag~~LQiFnletK~klks~~~~e~VvfWkWi--s~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~  146 (327)
T d1utca2          70 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA  146 (327)
T ss_dssp             ECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEES--SSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             cCCCCcEEEEecCCeEEEEehhHhhhhceEEcCCCcEEEEec--CCCEEEEEc-CCceEEEcccCCCCchhhhhhccccc
Confidence            356653333333678999999999999999988888888887  566777665 4679999995422 22 23333    


Q ss_pred             CCCeEEEEEccCCCEEEEEe---c----CCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEc--CCCCcEEEEE--
Q 006424          369 RDVISAICYIPDGKGFIVGS---I----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMIT--  437 (645)
Q Consensus       369 ~~~v~~l~~sp~g~~l~~g~---~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s--~~g~~~l~~~--  437 (645)
                      ...|-.-..++++++++..+   .    .|.+.+|..+......    +.++    ......+.+.  +....+++.+  
T Consensus       147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~----ieGh----aa~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE----ECCS----EEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcc----ccce----eeeeEEEEcCCCCCCceEEEEEEC
Confidence            34577777888899877643   2    3677888887554322    1221    1111111111  1111222222  


Q ss_pred             -ECCCeEEEEECCcc---eeeE-----ee----cCCCCCeEEEEEecCCCEEEEEeCCccEEEEeCCCCCc
Q 006424          438 -SEDSKLRILDGVDV---IHKF-----KG----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF  495 (645)
Q Consensus       438 -s~dg~I~iwd~~~~---~~~~-----~~----~~~~~~i~~v~~sp~~~~l~t~s~dg~I~iwd~~~~~~  495 (645)
                       ...+.+.|.++...   ...+     ..    .....-..++..|+.-..+..-+.-|.|++||+.++..
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~  289 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC  289 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccE
Confidence             22368888886531   1111     11    11234567888999889999999999999999999853

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.89  E-value=0.72  Score=43.26  Aligned_cols=132  Identities=15%  Similarity=0.116  Sum_probs=75.9

Q ss_pred             eEEEEe---CCCcEEEEecCCCe--EE--EEecC--CCcEEEEEEeeCCCCEEEEEe--C-------------CCcEEEE
Q 006424          300 YLLSCS---MDKTVRMWQVGCNQ--CL--NVFDH--HNYVTCVQFNPIDDNYFISGS--I-------------DGKVRIW  355 (645)
Q Consensus       300 ~l~s~s---~dg~I~iwd~~~~~--~~--~~~~~--~~~v~~l~~~p~~~~~l~s~s--~-------------dg~i~vw  355 (645)
                      +|+...   ...+|-++++....  ..  ..+.+  ....+.+.+.. ++.+++|-.  .             -+...+|
T Consensus       113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence            455553   45678888874332  21  22222  24578888887 777777621  0             1234445


Q ss_pred             eCCCCcEEEeeccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424          356 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  434 (645)
Q Consensus       356 d~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l  434 (645)
                      ....+........-...+.++++|++++|+++. ..+.|+.|++.............-     ....-.+.+.+.+..+.
T Consensus       192 ~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l-----~~~pDNi~~d~~~g~lw  266 (340)
T d1v04a_         192 YYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-----DTLVDNISVDPVTGDLW  266 (340)
T ss_dssp             EECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-----SSEEEEEEECTTTCCEE
T ss_pred             EEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecC-----CCCCCccEEecCCCEEE
Confidence            444555444444456789999999999877764 567899999976543222111111     24566788876432444


Q ss_pred             EEE
Q 006424          435 MIT  437 (645)
Q Consensus       435 ~~~  437 (645)
                      +++
T Consensus       267 va~  269 (340)
T d1v04a_         267 VGC  269 (340)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.68  E-value=0.51  Score=40.02  Aligned_cols=228  Identities=9%  Similarity=0.070  Sum_probs=118.3

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeEecCCCCc-ccCCCCceEEecccCCCcceeecCCCceecc-CCCceeeccCc-
Q 006424          211 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF-GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE-ESPLQELHGHK-  287 (645)
Q Consensus       211 dg~~L~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~h~-  287 (645)
                      +.++|+.+...|.+.++-+..++.......+-... ......+.+.|..+.........- ...++. ......+.... 
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai-~~~Nlk~~GEE~~i~spk~  103 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHAL-FKVNTSRPGEEQRLEAVKP  103 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECTTBSEEEEEEECSTTSCCEEE-EEEETTSTTCEEECTTSCS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCccCcceEEEEeehhcCcceeeE-EEEccCCCCeeeEecCCce
Confidence            44578888888999999887765544333322211 112233444444433222110000 000000 01112222222 


Q ss_pred             cCeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEec--CC--------CcEEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006424          288 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--HH--------NYVTCVQFNPIDDNYFISGSIDGKVRIWGV  357 (645)
Q Consensus       288 ~~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~--------~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~  357 (645)
                      -.|.++++...+..++|+......+|-++.|+......  .-        +.|..+.+...+..-++++         |+
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~a---------dl  174 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTS---------NL  174 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEE---------ET
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEE---------ec
Confidence            46777887766788899999999999999887655432  22        2233333322122223333         44


Q ss_pred             CCCcEEEeeccCCCeEEEEEccCCCEEEEEecC-C--eEEEEEecCCceeeeEEeeccc--cccCCCCeEEEEEcCCCCc
Q 006424          358 CEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDR--KKTSGNKITGIQFSRDESQ  432 (645)
Q Consensus       358 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~s~~g~~  432 (645)
                      .++.+.-+....+.++...+.+..+. +++... |  ...-+|++.+..  +.+.+...  ..-....|+-+-+.|++ .
T Consensus       175 ~SG~lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~y--erve~P~kd~~sy~p~~I~~~~Y~Pdd-~  250 (313)
T d2hu7a1         175 SSGGLRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSV--EDLELPSKDFSSYRPTAITWLGYLPDG-R  250 (313)
T ss_dssp             TTEEEEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCE--EECCCSSCHHHHHCCSEEEEEEECTTS-C
T ss_pred             ccCCEEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCce--eeeecCcccceeecceEEEeeeeCCCC-c
Confidence            44444444445555666666665544 444321 2  222345554443  22222221  11122456667799997 7


Q ss_pred             EEEEEECCCeEEEEECCcce
Q 006424          433 RIMITSEDSKLRILDGVDVI  452 (645)
Q Consensus       433 ~l~~~s~dg~I~iwd~~~~~  452 (645)
                      +++.+-.||.=+++.-.+..
T Consensus       251 L~iiakrdG~s~lF~nGk~i  270 (313)
T d2hu7a1         251 LAVVARREGRSAVFIDGERV  270 (313)
T ss_dssp             EEEEEEETTEEEEEETTEEE
T ss_pred             EEEEEecCCchheeecceEe
Confidence            88999999999999855433

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.61  E-value=0.74  Score=41.36  Aligned_cols=201  Identities=7%  Similarity=-0.043  Sum_probs=120.0

Q ss_pred             cccccCcEEEEEECCCCCEEEEE-eCCCcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCcee
Q 006424          196 IQAHKGCIWTLKFSPDGRYLASG-GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ  274 (645)
Q Consensus       196 l~~H~~~V~~l~fspdg~~L~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (645)
                      +..+...+..++|.+..+.|.-. ..++.|+..++....                                         
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~-----------------------------------------   69 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-----------------------------------------   69 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-----------------------------------------
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC-----------------------------------------
Confidence            44455568889998876665554 455667777765421                                         


Q ss_pred             ccCCCceeeccCccCeEEEEEcC-CCeEE-EEeCCCcEEEEecCCCeEEEEec-CCCcEEEEEEeeCCCCEEEEEeC-CC
Q 006424          275 IEESPLQELHGHKGDVLDLAWSN-SNYLL-SCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI-DG  350 (645)
Q Consensus       275 ~~~~~~~~l~~h~~~V~~l~~s~-~~~l~-s~s~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~s~-dg  350 (645)
                          ....+......+.++++.. .+.|+ +-...+.|.+.+++......... ....+..++++| ...+++.... .+
T Consensus        70 ----~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp-~~g~ly~t~~~~~  144 (263)
T d1npea_          70 ----PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRD  144 (263)
T ss_dssp             ----CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSS
T ss_pred             ----cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEec-ccCcEEEeecCCC
Confidence                1112222234577788864 34444 55567799999987554433333 235688999999 5555544332 22


Q ss_pred             c--EEEEeCCCCcEEEee-ccCCCeEEEEEccCCCEEEEEe-cCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEE
Q 006424          351 K--VRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF  426 (645)
Q Consensus       351 ~--i~vwd~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  426 (645)
                      .  |.--++.......+. ..-.....+++++.++.|+.+. ..+.|...++.+......   ..+.     ....++++
T Consensus       145 ~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v---~~~~-----~~P~~lav  216 (263)
T d1npea_         145 NPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV---LEGL-----QYPFAVTS  216 (263)
T ss_dssp             SCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE---EECC-----CSEEEEEE
T ss_pred             CcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEE---ECCC-----CCcEEEEE
Confidence            3  544566654433332 3335678999998888776664 567888888876543221   1221     22457777


Q ss_pred             cCCCCcEEEEEECCCeEEEEECCcce
Q 006424          427 SRDESQRIMITSEDSKLRILDGVDVI  452 (645)
Q Consensus       427 s~~g~~~l~~~s~dg~I~iwd~~~~~  452 (645)
                      .. + .++.+-...+.|...|.....
T Consensus       217 ~~-~-~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         217 YG-K-NLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             ET-T-EEEEEETTTTEEEEEETTTTE
T ss_pred             EC-C-EEEEEECCCCEEEEEECCCCc
Confidence            63 2 455555567888888876443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.56  E-value=1.5  Score=44.41  Aligned_cols=29  Identities=7%  Similarity=-0.185  Sum_probs=24.3

Q ss_pred             CCCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424          472 TGKHIISIGDDCRVYVWNYDELCFPSSKQ  500 (645)
Q Consensus       472 ~~~~l~t~s~dg~I~iwd~~~~~~~~~~~  500 (645)
                      .+.++++|+.||.++.+|.++++..+...
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            56788889999999999999998766553

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.35  E-value=1.4  Score=42.77  Aligned_cols=202  Identities=10%  Similarity=0.048  Sum_probs=103.4

Q ss_pred             CccCeEEEEEcCCC-eEE-EEeCCC----cEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCC----------
Q 006424          286 HKGDVLDLAWSNSN-YLL-SCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID----------  349 (645)
Q Consensus       286 h~~~V~~l~~s~~~-~l~-s~s~dg----~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~d----------  349 (645)
                      +.-.+...+++|++ +++ +-+.+|    .+++.|+.+++.+...-.......++|.+ ++..|+....+          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcC-CCCEEEEEEeccccCcccccc
Confidence            33344556778987 433 444444    69999999998765331112225678999 77776654432          


Q ss_pred             ------CcEEEEeCCCCc---EEEeec--cCCCeEEEEEccCCCEEEEEec---CCeEEEE--EecCCceeee----EEe
Q 006424          350 ------GKVRIWGVCEKR---VVDWAD--VRDVISAICYIPDGKGFIVGSI---TGTCHFY--KASGNDLKLE----KVD  409 (645)
Q Consensus       350 ------g~i~vwd~~~~~---~~~~~~--~~~~v~~l~~sp~g~~l~~g~~---dg~i~iw--d~~~~~~~~~----~~~  409 (645)
                            ..|..+.+.+..   ...+..  ....+..+..++++++++....   ++...+|  |+........    ...
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence                  257777776643   222222  2334667788999998876443   2333444  4433221110    000


Q ss_pred             eccccccCCCCeEEEEEcCCCCcEEEEEEC---CCeEEEEECCccee---eEeecCCCCCeEEEEEecCCCEEEEE-eCC
Q 006424          410 FHDRKKTSGNKITGIQFSRDESQRIMITSE---DSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISI-GDD  482 (645)
Q Consensus       410 ~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~---dg~I~iwd~~~~~~---~~~~~~~~~~i~~v~~sp~~~~l~t~-s~d  482 (645)
                      ....   ......-+ -+.++ .+++....   ++.|...++.....   ......+...+..-.++..+.+|+.. -.+
T Consensus       282 ~~~~---~~~~~~~~-~~~~~-~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~  356 (430)
T d1qfma1         282 LIDN---FEGEYDYV-TNEGT-VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (430)
T ss_dssp             EECS---SSSCEEEE-EEETT-EEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             eecc---cccceEEE-ecCCc-eeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcC
Confidence            0000   01122222 22222 34444433   35666666553211   11122244445544555555666654 355


Q ss_pred             --ccEEEEeCCCC
Q 006424          483 --CRVYVWNYDEL  493 (645)
Q Consensus       483 --g~I~iwd~~~~  493 (645)
                        ..|+++++.++
T Consensus       357 ~~~~l~v~~~~~~  369 (430)
T d1qfma1         357 VKNTLQLHDLATG  369 (430)
T ss_dssp             TEEEEEEEETTTC
T ss_pred             CEeEEEEEECCCC
Confidence              46888998766

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=1.1  Score=40.36  Aligned_cols=154  Identities=9%  Similarity=-0.036  Sum_probs=95.2

Q ss_pred             cCeEEEEEcCC-C-eEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEe--CCCcEEEEeCCCCcE
Q 006424          288 GDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS--IDGKVRIWGVCEKRV  362 (645)
Q Consensus       288 ~~V~~l~~s~~-~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s--~dg~i~vwd~~~~~~  362 (645)
                      ..+..+++... + ...+-...+.|.+.+++........ ........++++| ...+|+...  ..+.|.-.++.....
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~-~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEc-ccCeEEEeccCCCcceeEeccCCCce
Confidence            44566777643 3 4555566788999999866544433 3445688999999 444554443  334677777776655


Q ss_pred             EEee-ccCCCeEEEEEccCCCEEEEE-ecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC
Q 006424          363 VDWA-DVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED  440 (645)
Q Consensus       363 ~~~~-~~~~~v~~l~~sp~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d  440 (645)
                      ..+. ..-...+.+++++.++.|+.+ ...+.|...++.+........ ...    ......++++..+  .++.+-..+
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~-~~~----~~~~p~~lav~~~--~ly~td~~~  228 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEK----RLAHPFSLAVFED--KVFWTDIIN  228 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-CTT----TTSSEEEEEEETT--EEEEEETTT
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEe-CCC----cccccEEEEEECC--EEEEEECCC
Confidence            5543 334567899999988777666 456788888887655322111 111    1133556777643  455555566


Q ss_pred             CeEEEEECC
Q 006424          441 SKLRILDGV  449 (645)
Q Consensus       441 g~I~iwd~~  449 (645)
                      +.|...+..
T Consensus       229 ~~I~~~~~~  237 (266)
T d1ijqa1         229 EAIFSANRL  237 (266)
T ss_dssp             TEEEEEETT
T ss_pred             CeEEEEECC
Confidence            777777754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.25  E-value=2.6  Score=40.68  Aligned_cols=245  Identities=11%  Similarity=0.036  Sum_probs=116.8

Q ss_pred             ccCcEEEEEECCCCCEEEEE-eCC----CcEEEEEcCCCceeeeEecCCCCcccCCCCceEEecccCCCcceeecCCCce
Q 006424          199 HKGCIWTLKFSPDGRYLASG-GED----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF  273 (645)
Q Consensus       199 H~~~V~~l~fspdg~~L~sg-s~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (645)
                      +.-.+...++|||++++|-+ +.+    ..+++.|+.++.....                                    
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~------------------------------------  166 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------------------------  166 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------------------------
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc------------------------------------
Confidence            33345667889999988854 333    3689999998543211                                    


Q ss_pred             eccCCCceeeccCccCeEEEEEcCCC-eEEEEeCC----------------CcEEEEecCCCeE--EEEec---CCCcEE
Q 006424          274 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD----------------KTVRMWQVGCNQC--LNVFD---HHNYVT  331 (645)
Q Consensus       274 ~~~~~~~~~l~~h~~~V~~l~~s~~~-~l~s~s~d----------------g~I~iwd~~~~~~--~~~~~---~~~~v~  331 (645)
                              .+.  ......++|.+++ .|+....+                ..|..|.+.+...  ...+.   ....+.
T Consensus       167 --------~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~  236 (430)
T d1qfma1         167 --------VLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMG  236 (430)
T ss_dssp             --------EEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred             --------ccc--cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEE
Confidence                    111  1112457888876 44433222                2577777766532  23333   233466


Q ss_pred             EEEEeeCCCCEEEEEeC---CCc--EEEEeCCCCc--------EEEeeccCCCeEEEEEccCCCEEEEEe---cCCeEEE
Q 006424          332 CVQFNPIDDNYFISGSI---DGK--VRIWGVCEKR--------VVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHF  395 (645)
Q Consensus       332 ~l~~~p~~~~~l~s~s~---dg~--i~vwd~~~~~--------~~~~~~~~~~v~~l~~sp~g~~l~~g~---~dg~i~i  395 (645)
                      .+..++ ++++++....   ++.  +.+.|+....        ...............-+.++.+++...   .++.|..
T Consensus       237 ~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~  315 (430)
T d1qfma1         237 GAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLIN  315 (430)
T ss_dssp             EEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEE
T ss_pred             eeeccC-CcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEecCCceeecccCcccccceeEE
Confidence            677777 7887654332   333  3444543211        111222212222222222233333332   2356666


Q ss_pred             EEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCC--eEEEEECCcceeeEeecCCCCCeEEEEEecCC
Q 006424          396 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTG  473 (645)
Q Consensus       396 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~i~~v~~sp~~  473 (645)
                      .++..........-+...    ...+..-.+...+..+++....++  .|++++..............+.+..+...++.
T Consensus       316 ~~~~~~~~~~w~~vi~~~----~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~  391 (430)
T d1qfma1         316 IDFTDPEESKWKVLVPEH----EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKD  391 (430)
T ss_dssp             EETTBCCGGGCEEEECCC----SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTC
T ss_pred             ecCCCCccccceEEeccc----CcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCC
Confidence            666544322111111111    123333233322213444444554  67888876433222222234455555555555


Q ss_pred             CEEEEEeC----CccEEEEeCCCCC
Q 006424          474 KHIISIGD----DCRVYVWNYDELC  494 (645)
Q Consensus       474 ~~l~t~s~----dg~I~iwd~~~~~  494 (645)
                      ..+...-+    =.+++-+|+.+++
T Consensus       392 ~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         392 TEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             SEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEcCCCCCCeEEEEECCCCC
Confidence            54433222    2678888988774

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.04  E-value=1.4  Score=44.63  Aligned_cols=84  Identities=8%  Similarity=-0.031  Sum_probs=51.9

Q ss_pred             CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      |.|.-+|+.+++.+-.........+-.+.-.+.++++|+.||.++-+|.++++..-+ ..+...     ..-.-+.|..+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~-~~l~~~-----~~a~P~ty~~d  517 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN-FKMPSG-----GIGSPMTYSFK  517 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSSC-----CCSCCEEEEET
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEE-EECCCC-----ceecceEEEEC
Confidence            457778888887765433333222212233566888899999999999999886433 333321     11222556668


Q ss_pred             CCcEEEEEEC
Q 006424          430 ESQRIMITSE  439 (645)
Q Consensus       430 g~~~l~~~s~  439 (645)
                      |.+++++...
T Consensus       518 GkqYi~v~~g  527 (571)
T d2ad6a1         518 GKQYIGSMYG  527 (571)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            8788877654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.59  E-value=2.9  Score=38.94  Aligned_cols=142  Identities=10%  Similarity=0.105  Sum_probs=82.4

Q ss_pred             cEEEEecCC-CeEEEEec--------CCCcEEEEEE--eeCCCC-EEEEEeCCCcEEEEeCC---CC----cEEEeeccC
Q 006424          309 TVRMWQVGC-NQCLNVFD--------HHNYVTCVQF--NPIDDN-YFISGSIDGKVRIWGVC---EK----RVVDWADVR  369 (645)
Q Consensus       309 ~I~iwd~~~-~~~~~~~~--------~~~~v~~l~~--~p~~~~-~l~s~s~dg~i~vwd~~---~~----~~~~~~~~~  369 (645)
                      +|.+|.+.. ...+..+.        ....+..+|+  +|.++. ++++...+|.+..|.+.   .+    +.++.....
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~  179 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN  179 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence            577887742 22333332        1124666666  553454 46667778999888763   22    233445667


Q ss_pred             CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcC--CCCcEEE-EEECCCeEEEE
Q 006424          370 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR--DESQRIM-ITSEDSKLRIL  446 (645)
Q Consensus       370 ~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~--~g~~~l~-~~s~dg~I~iw  446 (645)
                      ..+..+.+......|+++-++..+..++.......................+-.++.-.  ++..+|+ +.-.+++..+|
T Consensus       180 ~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vy  259 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIY  259 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred             CccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEE
Confidence            78999999999999999988887766665433221111111111111235566776542  3323444 44457899999


Q ss_pred             ECCc
Q 006424          447 DGVD  450 (645)
Q Consensus       447 d~~~  450 (645)
                      |...
T Consensus       260 dr~~  263 (353)
T d1h6la_         260 ERQG  263 (353)
T ss_dssp             ESST
T ss_pred             ecCC
Confidence            9653

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.26  E-value=0.77  Score=46.76  Aligned_cols=81  Identities=14%  Similarity=0.076  Sum_probs=57.3

Q ss_pred             CCcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeE--EEEEccCCC-E
Q 006424          307 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS--AICYIPDGK-G  383 (645)
Q Consensus       307 dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~--~l~~sp~g~-~  383 (645)
                      .|.|.-+|+.+++.+-.+....++..-.... .+.++++|+.||.++.+|.++++.+-.......+.  -+.|..+|+ |
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            3678889999999888776444443322334 67888899999999999999999886544443332  266777886 5


Q ss_pred             EEEEe
Q 006424          384 FIVGS  388 (645)
Q Consensus       384 l~~g~  388 (645)
                      +++..
T Consensus       544 v~i~a  548 (582)
T d1flga_         544 LGVTV  548 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.15  E-value=1.9  Score=43.47  Aligned_cols=80  Identities=8%  Similarity=0.080  Sum_probs=56.0

Q ss_pred             CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeE--EEEEccCCC-EE
Q 006424          308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS--AICYIPDGK-GF  384 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~--~l~~sp~g~-~l  384 (645)
                      |.+.-||+.+++.+-.+........-...- .+.+++.|+.||.++.+|.++++.+-.......+.  -+.|..+|+ ++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            678889999999988776444433323333 67888899999999999999999886544433333  256667786 55


Q ss_pred             EEEe
Q 006424          385 IVGS  388 (645)
Q Consensus       385 ~~g~  388 (645)
                      ++..
T Consensus       517 ~v~a  520 (560)
T d1kv9a2         517 AIMA  520 (560)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.09  E-value=1  Score=45.53  Aligned_cols=86  Identities=13%  Similarity=0.159  Sum_probs=55.7

Q ss_pred             CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      |.|.-||+.+++++-.........+-.+.-.+.++++|+.||.++.+|.++++..-. ......  ....+   +.|..+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~-~~l~~~--~~~~P---~ty~~d  511 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ-FEAQSG--IVAAP---MTFELA  511 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSSC--CCSCC---EEEEET
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE-EECCCC--ccccC---EEEEEC
Confidence            467888998888776544444443333344567888999999999999999987533 333221  11223   455667


Q ss_pred             CCcEEEEEECCC
Q 006424          430 ESQRIMITSEDS  441 (645)
Q Consensus       430 g~~~l~~~s~dg  441 (645)
                      |.++|++.+..|
T Consensus       512 Gkqyv~v~aG~g  523 (560)
T d1kv9a2         512 GRQYVAIMAGWG  523 (560)
T ss_dssp             TEEEEEEEECCC
T ss_pred             CEEEEEEEeCCC
Confidence            877877766544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.03  E-value=5.5  Score=38.49  Aligned_cols=109  Identities=11%  Similarity=0.123  Sum_probs=63.0

Q ss_pred             CcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeec---------cCCCeEEEEEccC---CCEEEEEec------
Q 006424          328 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---------VRDVISAICYIPD---GKGFIVGSI------  389 (645)
Q Consensus       328 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---------~~~~v~~l~~sp~---g~~l~~g~~------  389 (645)
                      ...++|+|.| ++++|++--..|.|++++..++....+..         .......|+|+|+   ..++.+...      
T Consensus        27 ~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            4678999999 88888776557999999988776554322         2345778999994   345554321      


Q ss_pred             -C----C--eEEEEEecCCceeee--EEeeccccccCCCCeEEEEEcCCCCcEEEEEE
Q 006424          390 -T----G--TCHFYKASGNDLKLE--KVDFHDRKKTSGNKITGIQFSRDESQRIMITS  438 (645)
Q Consensus       390 -d----g--~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s  438 (645)
                       +    +  .+..+..........  ...+.............+.|.|+| .++++.+
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG-~LYvs~G  162 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCC-CEEEEec
Confidence             1    1  233444443322211  111111111223456789999998 4555444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.78  E-value=5  Score=37.14  Aligned_cols=182  Identities=10%  Similarity=0.081  Sum_probs=97.3

Q ss_pred             eEEEEEcCCCe-EEEEeC------------CCcEEEEecCCCeEEE-Ee---cC-----CCcEEEEEEeeC-CCC-EEEE
Q 006424          290 VLDLAWSNSNY-LLSCSM------------DKTVRMWQVGCNQCLN-VF---DH-----HNYVTCVQFNPI-DDN-YFIS  345 (645)
Q Consensus       290 V~~l~~s~~~~-l~s~s~------------dg~I~iwd~~~~~~~~-~~---~~-----~~~v~~l~~~p~-~~~-~l~s  345 (645)
                      .-++...|++. +++++.            .|.|.++|+.+..... .+   ..     .-....+..... ++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            34577778884 333321            3889999987653321 11   11     012344444221 343 3444


Q ss_pred             Ee---CCCcEEEEeCCCC--cEEEe--e--ccCCCeEEEEEccCCCEEEEEec---------------CCeEEEEEecCC
Q 006424          346 GS---IDGKVRIWGVCEK--RVVDW--A--DVRDVISAICYIPDGKGFIVGSI---------------TGTCHFYKASGN  401 (645)
Q Consensus       346 ~s---~dg~i~vwd~~~~--~~~~~--~--~~~~~v~~l~~sp~g~~l~~g~~---------------dg~i~iwd~~~~  401 (645)
                      ..   ...+|.+|++...  +....  .  ......+.+.+..+|.++++-..               -+...+|.....
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            42   3467888887432  22221  1  22345788999889987777321               123344444444


Q ss_pred             ceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECCCeEEEEECCcc--eeeEeecCCCCCeEEEEEecC-CCEEEE
Q 006424          402 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTT-GKHIIS  478 (645)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~i~~v~~sp~-~~~l~t  478 (645)
                      .....   ..+     ....+.|+++|++..++++-+..+.|++|++...  ........-.+..-.+.++++ |.+.++
T Consensus       197 ~~~~~---~~~-----l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         197 DVRVV---AEG-----FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             CEEEE---EEE-----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             ceEEE---cCC-----CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            33221   121     1457899999998666667777899999987532  111111123445667777764 444444


Q ss_pred             E
Q 006424          479 I  479 (645)
Q Consensus       479 ~  479 (645)
                      +
T Consensus       269 ~  269 (340)
T d1v04a_         269 C  269 (340)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.73  E-value=1.8  Score=43.74  Aligned_cols=80  Identities=15%  Similarity=0.174  Sum_probs=54.9

Q ss_pred             CcEEEEecCCCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEeeccCCCeEE--EEEccCCC-EE
Q 006424          308 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA--ICYIPDGK-GF  384 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~v~~--l~~sp~g~-~l  384 (645)
                      |.+.-||+.+++.+-.+....+...-...- .+.++++|+.||.++.+|.++++.+-.......+.+  +.|..+|+ |+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            468889999999888776444332222333 678899999999999999999998865444333332  55666886 45


Q ss_pred             EEEe
Q 006424          385 IVGS  388 (645)
Q Consensus       385 ~~g~  388 (645)
                      ++.+
T Consensus       536 ~v~~  539 (573)
T d1kb0a2         536 SVAV  539 (573)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.66  E-value=7.6  Score=39.03  Aligned_cols=31  Identities=13%  Similarity=-0.077  Sum_probs=25.5

Q ss_pred             ecCCCEEEEEeCCccEEEEeCCCCCcCCCcc
Q 006424          470 TTTGKHIISIGDDCRVYVWNYDELCFPSSKQ  500 (645)
Q Consensus       470 sp~~~~l~t~s~dg~I~iwd~~~~~~~~~~~  500 (645)
                      +-.+.+++.|+.||.++.+|.++++..++..
T Consensus       481 sTagglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            3357788899999999999999998766553

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.61  E-value=0.91  Score=46.08  Aligned_cols=84  Identities=11%  Similarity=0.088  Sum_probs=52.0

Q ss_pred             cEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006424          351 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE  430 (645)
Q Consensus       351 ~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g  430 (645)
                      .+.-||+.+++.+-......+...=..+-.|.++++|+.||.++.+|.++++..-+ .....  .....+   +.|..+|
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~-~~~~~--~~~~~P---~ty~~~G  531 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE-APTGT--GVVAAP---STYMVDG  531 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSS--CCCSCC---EEEEETT
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEE-EECCC--CccccC---EEEEECC
Confidence            46677777777665443333322222334677888999999999999999987433 33322  112233   4455677


Q ss_pred             CcEEEEEECC
Q 006424          431 SQRIMITSED  440 (645)
Q Consensus       431 ~~~l~~~s~d  440 (645)
                      ++++++.+.-
T Consensus       532 kQYv~v~~G~  541 (573)
T d1kb0a2         532 RQYVSVAVGW  541 (573)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEeCC
Confidence            7777766543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.74  E-value=1  Score=45.84  Aligned_cols=85  Identities=12%  Similarity=0.111  Sum_probs=53.9

Q ss_pred             CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      |.|.-||+.++++.-.........+-.++-.|.++++|+.||.++.+|.++++..-+ .....  .....+   +.|..+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~-~~~~~--~~~a~P---~tY~~d  526 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK-FKIPS--GAIGYP---MTYTHK  526 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSS--CCCSCC---EEEEET
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeE-EECCC--CcccCC---eEEEEC
Confidence            467788888887765443333333323334677888899999999999999987543 33222  112234   445568


Q ss_pred             CCcEEEEEECC
Q 006424          430 ESQRIMITSED  440 (645)
Q Consensus       430 g~~~l~~~s~d  440 (645)
                      |.+++++...-
T Consensus       527 GkQYvav~~G~  537 (596)
T d1w6sa_         527 GTQYVAIYYGV  537 (596)
T ss_dssp             TEEEEEEEECC
T ss_pred             CEEEEEEEecC
Confidence            87888776543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.17  E-value=3.9  Score=39.61  Aligned_cols=112  Identities=16%  Similarity=0.179  Sum_probs=62.0

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc--cccCCCCeEEEEEcCC---CCcEEEEEEC----
Q 006424          369 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR--KKTSGNKITGIQFSRD---ESQRIMITSE----  439 (645)
Q Consensus       369 ~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~s~~---g~~~l~~~s~----  439 (645)
                      -...++|+|.|+|+++++--..|.|++++..+...... ......  ..........|+|+|+   +..+.++.+.    
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i-~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~  104 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTV-FQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-EECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeec-ccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence            35678999999998877665579999998776554321 111111  1112356789999985   2133332220    


Q ss_pred             --C----Ce--EEEEECC--c-----ceeeEee--cCCCCCeEEEEEecCCCEEEEEeC
Q 006424          440 --D----SK--LRILDGV--D-----VIHKFKG--LPKSGSQMSASFTTTGKHIISIGD  481 (645)
Q Consensus       440 --d----g~--I~iwd~~--~-----~~~~~~~--~~~~~~i~~v~~sp~~~~l~t~s~  481 (645)
                        +    +.  +..+...  .     ....+..  .........+.|.|||.+.++.++
T Consensus       105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence              1    12  2222211  0     1111111  122345678999999998887764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.13  E-value=7.2  Score=36.09  Aligned_cols=186  Identities=12%  Similarity=0.191  Sum_probs=107.7

Q ss_pred             eEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEee---CCC--CEEEEEeC--C--CcEEEEeCCC--CcEEEeec-
Q 006424          300 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP---IDD--NYFISGSI--D--GKVRIWGVCE--KRVVDWAD-  367 (645)
Q Consensus       300 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p---~~~--~~l~s~s~--d--g~i~vwd~~~--~~~~~~~~-  367 (645)
                      +++....++-|.+||+. |+.+..+. .+.++.+..-.   ..+  ..+++++.  +  .+|.+|.+..  ..+..+.. 
T Consensus        42 lI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~  119 (353)
T d1h6la_          42 KLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDP  119 (353)
T ss_dssp             EEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCS
T ss_pred             EEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccc
Confidence            66666777779999996 77776664 34455554431   012  23455552  2  2577787642  33332221 


Q ss_pred             ------cCCCeEEEEE--ccC-CC-EEEEEecCCeEEEEEecCC---ceeeeEE-eeccccccCCCCeEEEEEcCCCCcE
Q 006424          368 ------VRDVISAICY--IPD-GK-GFIVGSITGTCHFYKASGN---DLKLEKV-DFHDRKKTSGNKITGIQFSRDESQR  433 (645)
Q Consensus       368 ------~~~~v~~l~~--sp~-g~-~l~~g~~dg~i~iwd~~~~---~~~~~~~-~~~~~~~~~~~~i~~i~~s~~g~~~  433 (645)
                            ....++.+|+  ++. |. ++++...+|.+..|.+...   ......+ .+..     ...+-.+.+.+.. ..
T Consensus       120 ~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-----~~q~EGCVvDde~-~~  193 (353)
T d1h6la_         120 NRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-----NSQTEGMAADDEY-GS  193 (353)
T ss_dssp             SSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-----SSCEEEEEEETTT-TE
T ss_pred             ccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-----CCccceEEEeCCC-Cc
Confidence                  1234677777  554 44 5666778899998877432   2222211 1211     2567888888886 78


Q ss_pred             EEEEECCCeEEEEECC----cceeeE-e--ecCCCCCeEEEEEec--CCC-EEEEEe-CCccEEEEeCCCC
Q 006424          434 IMITSEDSKLRILDGV----DVIHKF-K--GLPKSGSQMSASFTT--TGK-HIISIG-DDCRVYVWNYDEL  493 (645)
Q Consensus       434 l~~~s~dg~I~iwd~~----~~~~~~-~--~~~~~~~i~~v~~sp--~~~-~l~t~s-~dg~I~iwd~~~~  493 (645)
                      |+.+-++..|+.++..    ...... .  +..-...+..++.-.  ++. ||++++ .+++..|||..+.
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            9999888877777654    111111 1  112345677777533  333 555544 5789999998764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.31  E-value=5.5  Score=33.58  Aligned_cols=187  Identities=12%  Similarity=0.116  Sum_probs=101.3

Q ss_pred             CCeEEEEeCCCcEEEEecCCCeEEEEecCCCcEEEEEEeeC-CCCEEEEEe------CCCcEEEEeCCC-CcEEEeeccC
Q 006424          298 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-DDNYFISGS------IDGKVRIWGVCE-KRVVDWADVR  369 (645)
Q Consensus       298 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~~p~-~~~~l~s~s------~dg~i~vwd~~~-~~~~~~~~~~  369 (645)
                      +..++.+...|.+.++-+..++.+....  .+|... ..|. .-.++..+-      .-..|++-++.. ++..++...+
T Consensus        26 d~ll~~~~seG~vni~~l~g~~~vkLtk--ePI~~~-~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk  102 (313)
T d2hu7a1          26 DKLLVVGFSEGSVNAYLYDGGETVKLNR--EPINSV-LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK  102 (313)
T ss_dssp             TEEEEEEEETTEEEEEEESSSSCEECCS--SCCSEE-CEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSC
T ss_pred             CcEEEEEeccceEEEEEEeCCEEEEEec--ccccCc-CCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCc
Confidence            3478888888999999888777665542  122221 1220 111121111      122355555542 3333333333


Q ss_pred             -CCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccc---cccCCCCeEEEEEcCCCCcEEEEEEC-CCeEE
Q 006424          370 -DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---KKTSGNKITGIQFSRDESQRIMITSE-DSKLR  444 (645)
Q Consensus       370 -~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~i~~i~~s~~g~~~l~~~s~-dg~I~  444 (645)
                       -.|.++++. +.+...+|+......+|-+.++..... .....-   ......-|..+.+-..++.-++++.- .|.++
T Consensus       103 ~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL-~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr  180 (313)
T d2hu7a1         103 PMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLREL-ARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  180 (313)
T ss_dssp             SBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEE-EEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred             eEEEEEeeec-CceEEEecccCCceEEEEEeCCceeee-ccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence             445555553 455777888888889999988775432 111110   00112445555554444455666666 78888


Q ss_pred             EEECCcceeeE----------------------eecC------------------CCCCeEEEEEecCCCEEEEEeCCcc
Q 006424          445 ILDGVDVIHKF----------------------KGLP------------------KSGSQMSASFTTTGKHIISIGDDCR  484 (645)
Q Consensus       445 iwd~~~~~~~~----------------------~~~~------------------~~~~i~~v~~sp~~~~l~t~s~dg~  484 (645)
                      |++..+.....                      ....                  ....|+-+-+.|++++++.+-.||.
T Consensus       181 i~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~  260 (313)
T d2hu7a1         181 VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR  260 (313)
T ss_dssp             EECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTE
T ss_pred             EecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCc
Confidence            88643211000                      0000                  1122444557899998888888998


Q ss_pred             EEEEe
Q 006424          485 VYVWN  489 (645)
Q Consensus       485 I~iwd  489 (645)
                      -++|.
T Consensus       261 s~lF~  265 (313)
T d2hu7a1         261 SAVFI  265 (313)
T ss_dssp             EEEEE
T ss_pred             hheee
Confidence            88886

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.02  E-value=1.4  Score=44.84  Aligned_cols=84  Identities=15%  Similarity=0.099  Sum_probs=54.7

Q ss_pred             CcEEEEeCCCCcEEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006424          350 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD  429 (645)
Q Consensus       350 g~i~vwd~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~  429 (645)
                      |.|.-+|+.++++.-......++..-..+-.|.++++|+.||.++.+|.++++..-+ ......  .+..+   +.|..+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~-~~~~~~--~~~~P---~ty~~~  539 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK-FQTGSG--IVSPP---ITWEQD  539 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSSC--CCSCC---EEEEET
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEE-EECCCC--ccccC---EEEEEC
Confidence            567788888888776444444443323345677888899999999999999987543 323221  12223   566678


Q ss_pred             CCcEEEEEEC
Q 006424          430 ESQRIMITSE  439 (645)
Q Consensus       430 g~~~l~~~s~  439 (645)
                      |.+++++.+.
T Consensus       540 G~qYv~i~ag  549 (582)
T d1flga_         540 GEQYLGVTVG  549 (582)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEeC
Confidence            8778776553

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.80  E-value=19  Score=33.48  Aligned_cols=179  Identities=8%  Similarity=-0.004  Sum_probs=98.1

Q ss_pred             cCeEEEEEcCC-CeEEEEeCCCcEEEEecC-----------CCeEEEEecCCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006424          288 GDVLDLAWSNS-NYLLSCSMDKTVRMWQVG-----------CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW  355 (645)
Q Consensus       288 ~~V~~l~~s~~-~~l~s~s~dg~I~iwd~~-----------~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vw  355 (645)
                      ....-++.++. |+++.|+.++ +.|-...           ......... -..|..++|+-   +.++... ++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~-ip~v~~vafs~---d~l~v~~-~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPDVIFVCFHG---DQVLVST-RNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTTEEEEEEET---TEEEEEE-SSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC-CCCeEEEEeeC---CEEEEEe-CCCEEEE
Confidence            34556777765 6888888775 5566531           111111111 23588889963   3455543 5668888


Q ss_pred             eCCCCc-EEEeeccCCCeEEEEEccCCCEEEEEecCCeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006424          356 GVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI  434 (645)
Q Consensus       356 d~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l  434 (645)
                      +...-. .........++..+.++|.  .+++...+|.+.++++...............  .-...+.+++|++.| ..+
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~--~~~~~~~~v~ws~kg-kq~  185 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSF--DVTNSQLAVLLKDRS-FQS  185 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEE--EECSSEEEEEETTSC-EEE
T ss_pred             EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceE--EecCCceEEEEeCCc-EEE
Confidence            876533 3333344566788887764  5777788999999999876542211100000  002567888888876 566


Q ss_pred             EEEECCCeEEEE-ECCcceeeEee-cCCCCCeEEEEEecCCCEEEEE
Q 006424          435 MITSEDSKLRIL-DGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISI  479 (645)
Q Consensus       435 ~~~s~dg~I~iw-d~~~~~~~~~~-~~~~~~i~~v~~sp~~~~l~t~  479 (645)
                      +++..++ ..+- ++.... .+.. ......+.++.|-.+..++++-
T Consensus       186 v~~~g~~-~q~k~~i~~~~-~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         186 FAWRNGE-MEKQFEFSLPS-ELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEETTE-EEEEEEECCCH-HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEeCCCc-eeeccCCCCcc-ccCCCcCCCcceeEEEEecCceEEEEE
Confidence            6664332 2221 111110 0110 1134467888887766666654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.25  E-value=16  Score=31.79  Aligned_cols=173  Identities=13%  Similarity=0.072  Sum_probs=77.2

Q ss_pred             CcEEEEecCCCeEEEEec--CC-CcEEEEEEeeCCCCEEEEEeCCCc-----EEEEeCCCCcEEEeeccCCC--eEEEEE
Q 006424          308 KTVRMWQVGCNQCLNVFD--HH-NYVTCVQFNPIDDNYFISGSIDGK-----VRIWGVCEKRVVDWADVRDV--ISAICY  377 (645)
Q Consensus       308 g~I~iwd~~~~~~~~~~~--~~-~~v~~l~~~p~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~--v~~l~~  377 (645)
                      ..+.+||..+.+....-.  .. ..-.++.+   ++.+++.++.++.     ...+|..+............  -.++..
T Consensus        70 ~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~---~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  146 (288)
T d1zgka1          70 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV  146 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             chhhhcccccccccccccccceecceecccc---ceeeEEecceecccccceeeeeccccCccccccccccccccceeee
Confidence            357788887665543221  11 11122222   5566666554333     44567666554443222211  112222


Q ss_pred             ccCCCEEEEEecC-----CeEEEEEecCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEECC-----CeEEEEE
Q 006424          378 IPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILD  447 (645)
Q Consensus       378 sp~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~~l~~~s~d-----g~I~iwd  447 (645)
                      . ++..++.|+.+     ..+..||..............      .....+.....+  .+++.++.+     .....+|
T Consensus       147 ~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~--~i~i~GG~~~~~~~~~~~~~~  217 (288)
T d1zgka1         147 L-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT------IRSGAGVCVLHN--CIYAAGGYDGQDQLNSVERYD  217 (288)
T ss_dssp             E-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS------CCBSCEEEEETT--EEEEECCBCSSSBCCCEEEEE
T ss_pred             e-eecceEecCcccccccceEEEeecccccccccccccc------ccccccccceee--eEEEecCccccccccceeeee
Confidence            2 34455555443     356777776554322111000      111122333332  456665544     3456677


Q ss_pred             CCcceeeEeecCCCCCe-EEEEEecCCCEEEEEeCCc-----cEEEEeCCCC
Q 006424          448 GVDVIHKFKGLPKSGSQ-MSASFTTTGKHIISIGDDC-----RVYVWNYDEL  493 (645)
Q Consensus       448 ~~~~~~~~~~~~~~~~i-~~v~~sp~~~~l~t~s~dg-----~I~iwd~~~~  493 (645)
                      ................. .+++ ..++++++.|+.++     .|.+||+.+.
T Consensus       218 ~~~~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         218 VETETWTFVAPMKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             TTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ecceeeecccCccCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCC
Confidence            55432222111111111 1222 23677888777543     3677777754

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.75  E-value=22  Score=32.96  Aligned_cols=95  Identities=12%  Similarity=0.026  Sum_probs=60.3

Q ss_pred             CeEEEEEcCCCeEEEEeCCCcEEEEecCCCeEEEEe-cCCCcEEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCcEEEee-
Q 006424          289 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA-  366 (645)
Q Consensus       289 ~V~~l~~s~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-  366 (645)
                      .|..++|+.+. |+. ..++.+..++..+-...... ....++..+.++|   ..++....++.+.++++..+...... 
T Consensus        88 ~v~~vafs~d~-l~v-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGDQ-VLV-STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETTE-EEE-EESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCCE-EEE-EeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccC
Confidence            58889997553 333 34456777776553222222 2455678888766   45667777899999999887644321 


Q ss_pred             -----ccCCCeEEEEEccCCCEEEEEe
Q 006424          367 -----DVRDVISAICYIPDGKGFIVGS  388 (645)
Q Consensus       367 -----~~~~~v~~l~~sp~g~~l~~g~  388 (645)
                           .....+.+++|++.|+.++++.
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeC
Confidence                 2235567777777777666653