Citrus Sinensis ID: 006431

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-----
MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAASVNMSEMSQASSVPSTNTYQPAQTSSPSSLNFFQITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNMQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMMRTHATEHKSTNPFDFPCDSDLEQNNMVWPRFLIC
cccHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccEEEEcccHHHHHcccccEEEEEcccccHHHHHHHHHHcHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccHHHHHHHHHHHHccccccEcccccccccEEEEEEEEEEEEEccccccccccEEEEEccccccHHHHHHHHHccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcEEEEc
MGSRKEEERNEKIIRGlmklppnrrcincnslgpqyvctnfWTFVCMTcsgihrefthrvksvsmskFTSQEVEALQNGGNQRAREIYLKDwdfqrqrlpdnsnvnKVRDFIKNVYvdrryaggktpdkppkdtqglgshldesrrassyhsysqsppydyqyedrrygKLGAvltrkpgsdrghyvgkisslvhspgrmseqMFEDRfanegscsrisdysvssggdpfrpgaqspnfqkdagfnsppvqlsrdVSSLKAnfkrdvdgiphpkrttslgsmgsfdsnsvslkscnsggltdvsehddqaagapldkistfpqshgpvnyggldlfeapvvpetvpstappidlfqlpetsaasvnmsemsqassvpstntyqpaqtsspsslnffqiteqpstailnrnpqelsipknegwatfdtppsaasipgteslshamvpanegssvksdqfpssntsmqwpafqnsgangpspssdpwsgnlhivqapavatSAQVvsaasdpwpgnlhngeapaiatnmqswnafddftshlpsegfkpnsephvdaympsptpdQYLAIVSQetnddgnprvashdgppnmtvpsqadmgpsynpsmfplmmrthatehkstnpfdfpcdsdleqnnmvwprflic
mgsrkeeernekiirglmklppnrRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDwdfqrqrlpdnsnvnkvrdFIKNVyvdrryaggktpdkppkdtqgLGSHLDEsrrassyhsysqsppydyqyEDRRYGKLGAVLtrkpgsdrghyVGKISslvhspgrMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKanfkrdvdgiphpkrttslgsmgsfdSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAASVNMSEMSQASSVPSTNTYQPAQTSSPSSLNFFQITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNMQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMMRTHATEHKSTNPFDFPCDSDLEQNNMVWPRFLIC
MGSrkeeernekiirGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQGLGSHLDESRRAssyhsysqsppydyqyEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAASVNMSEMSQASSVPSTNTYQPAQTSSPSSLNFFQITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPSPSSDPWSGNLHIvqapavatsaqvvsaasDPWPGNLHNGEAPAIATNMQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMMRTHATEHKSTNPFDFPCDSDLEQNNMVWPRFLIC
************IIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSV********************AREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY*****************************************YEDRRYGKLGAVL********************************************************************************************************************************************************VNYGGLDLFEAPVVP**************************************************************************************************************************************************LHIVQAPAVAT***V*******************IATNMQSWNAFD*****************************************************************************************************NMVWPRFLI*
***************GLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQR********VNKVRDFIKNVYVDRR**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************PCDSDLEQNNMVWPRFLIC
**********EKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGK********************************PYDYQYEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAAS***************************SLNFFQITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVP*****************SMQWPAFQN***********PWSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNMQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMMRTHATEHKSTNPFDFPCDSDLEQNNMVWPRFLIC
*******ERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAG****************************************************************************************************************************************************************************************************************************************************************************************************************************L*******NEGSSVKSDQFPSSNTSMQWPAFQNSG*NGPSPSSDPWSGNLHIVQAPA*********************************************S*G******P*V***MPS*T*DQY***********GNPRVASHDGPPNMTVPSQADMGPSYNPSMFPL***********TNPFDFPCDSDLEQNNMVWPRFLIC
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MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAASVNMSEMSQASSVPSTNTYQPAQTSSPSSLNFFQITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNMQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMMRTHATEHKSTNPFDFPCDSDLEQNNMVWPRFLIC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query645 2.2.26 [Sep-21-2011]
Q8RXE7649 Probable ADP-ribosylation yes no 0.880 0.875 0.472 1e-137
Q8K2K6561 Arf-GAP domain and FG rep yes no 0.182 0.210 0.408 2e-24
Q2TA45562 Arf-GAP domain and FG rep yes no 0.182 0.209 0.408 2e-24
P52594562 Arf-GAP domain and FG rep yes no 0.182 0.209 0.408 2e-24
Q4KLH5561 Arf-GAP domain and FG rep yes no 0.182 0.210 0.408 2e-24
O95081481 Arf-GAP domain and FG rep no no 0.153 0.205 0.405 2e-17
Q80WC7479 Arf-GAP domain and FG rep no no 0.153 0.206 0.405 3e-17
Q9FL69483 Probable ADP-ribosylation no no 0.226 0.302 0.306 7e-16
Q8IYB5467 Stromal membrane-associat no no 0.133 0.184 0.325 9e-13
Q5F413428 Stromal membrane-associat no no 0.173 0.261 0.285 2e-12
>sp|Q8RXE7|AGD14_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2 Back     alignment and function desciption
 Score =  489 bits (1258), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 304/643 (47%), Positives = 368/643 (57%), Gaps = 75/643 (11%)

Query: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRV 60
           MGS++EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCT FWTFVCM CSGIHREFTHRV
Sbjct: 2   MGSKREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFTHRV 61

Query: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120
           KSVSMSKFTS+EVE LQNGGNQRAREIYLK+WD QRQRLP+NSN  +VR+FIKNVYV ++
Sbjct: 62  KSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKK 121

Query: 121 YAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPG 180
           YAG    DKP KD+Q   S  D +RRA+SYHSYSQSPPYDYQYE+RRYGK+    T K  
Sbjct: 122 YAGANDADKPSKDSQDHVSSEDMTRRANSYHSYSQSPPYDYQYEERRYGKIPLGFTGKSA 181

Query: 181 SDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQ 240
           S +G +  K SS V+SPGR S+ MFED+F+NE S  R SDYSVSS GDPFR   QSPNFQ
Sbjct: 182 SVKGLH-AKASSFVYSPGRFSDHMFEDQFSNEDSAPRASDYSVSSAGDPFRSDIQSPNFQ 240

Query: 241 KDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGL 300
           ++A F SP  Q S    S     +    G  H +RTTS GS+ S DSN +S+KS  SGGL
Sbjct: 241 QEAEFRSPQFQHSNAPPS-----ENLFPGRQH-QRTTSSGSVRSVDSNFMSIKSYTSGGL 294

Query: 301 TDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPET 360
            +      Q  G+   K S                     VP    ST  PIDLFQLP  
Sbjct: 295 GEAVSESRQNTGSQQGKTSNH-------------------VPLVAESTKAPIDLFQLPGA 335

Query: 361 SAA-SVNMSEMSQASSVPSTNTYQPAQTSSPSSLNFF--QITEQPSTAILNRNPQELSIP 417
             A SV+  + S A   P  N  Q  QT S +  N F   + +QP++      P ELS P
Sbjct: 336 PVAQSVDTFQPSIAPRSPPVNLQQAPQTYSFTPANSFAGNLGQQPTS-----RPSELSAP 390

Query: 418 KNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANG 477
           KNEGWA+FD P     +P  +S +    P +    +K ++    +TSMQ P +       
Sbjct: 391 KNEGWASFDNP-----MPAAKSTNVITSPGDFQLELKIEEILQPSTSMQLPPY------- 438

Query: 478 PSPSSDPWSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNMQSWNAFDDFT 537
                 P + + H +  P+             PW  +L N     +  N Q WNAF D  
Sbjct: 439 ------PSTVDQHALSIPS-------------PWQEDLSN-VLKDVVDNPQPWNAFPDSI 478

Query: 538 SHLPSEGFKPNSEPHVDAYMPSP--TPDQYL-AIVSQETNDDGNPRVASHDGPPNMTVPS 594
              P +  + N    VD    S   T  Q+L + V +E ++DG        G      P 
Sbjct: 479 EANPLDSSR-NIHQQVDGASTSSYNTDHQHLESQVLEELSNDGTQTTRIPAGSSAFGFPG 537

Query: 595 QADMGPSYNPSMFPLMMRTHATEHKSTNPFDFPCDSDLEQNNM 637
              M PSY+   +      H  E KS NPFD P DS+ + N+M
Sbjct: 538 NIGMAPSYSEEAW-----QHVNEQKSANPFDLPYDSEFDSNDM 575
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q8K2K6|AGFG1_MOUSE Arf-GAP domain and FG repeat-containing protein 1 OS=Mus musculus GN=Agfg1 PE=1 SV=2 Back     alignment and function description
>sp|Q2TA45|AGFG1_BOVIN Arf-GAP domain and FG repeat-containing protein 1 OS=Bos taurus GN=AGFG1 PE=2 SV=1 Back     alignment and function description
>sp|P52594|AGFG1_HUMAN Arf-GAP domain and FG repeat-containing protein 1 OS=Homo sapiens GN=AGFG1 PE=1 SV=2 Back     alignment and function description
>sp|Q4KLH5|AGFG1_RAT Arf-GAP domain and FG repeat-containing protein 1 OS=Rattus norvegicus GN=Agfg1 PE=1 SV=1 Back     alignment and function description
>sp|O95081|AGFG2_HUMAN Arf-GAP domain and FG repeat-containing protein 2 OS=Homo sapiens GN=AGFG2 PE=1 SV=2 Back     alignment and function description
>sp|Q80WC7|AGFG2_MOUSE Arf-GAP domain and FG repeat-containing protein 2 OS=Mus musculus GN=Agfg2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1 Back     alignment and function description
>sp|Q8IYB5|SMAP1_HUMAN Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query645
224123950672 predicted protein [Populus trichocarpa] 0.919 0.882 0.6 0.0
255580246692 HIV-1 rev binding protein, hrbl, putativ 0.930 0.867 0.564 0.0
296085867695 unnamed protein product [Vitis vinifera] 0.922 0.856 0.578 0.0
359480998677 PREDICTED: probable ADP-ribosylation fac 0.899 0.856 0.569 1e-179
307136134674 GTPase activating protein [Cucumis melo 0.883 0.845 0.517 1e-167
449437662673 PREDICTED: probable ADP-ribosylation fac 0.883 0.846 0.512 1e-166
356514062741 PREDICTED: probable ADP-ribosylation fac 0.958 0.834 0.504 1e-161
356506188676 PREDICTED: probable ADP-ribosylation fac 0.924 0.881 0.510 1e-157
356573913697 PREDICTED: probable ADP-ribosylation fac 0.911 0.843 0.489 1e-155
334182402651 putative ADP-ribosylation factor GTPase- 0.880 0.872 0.472 1e-136
>gi|224123950|ref|XP_002319204.1| predicted protein [Populus trichocarpa] gi|222857580|gb|EEE95127.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/640 (60%), Positives = 453/640 (70%), Gaps = 47/640 (7%)

Query: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRV 60
           MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTF+C TCSGIHREFTHRV
Sbjct: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFICTTCSGIHREFTHRV 60

Query: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120
           KSVSMSKFTSQEVEALQNGGNQRAREIYLKDW+ QRQRLPDNS V+KVR+FIK+VYVD++
Sbjct: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWNQQRQRLPDNSKVDKVREFIKDVYVDKK 120

Query: 121 YAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPG 180
           YAGG T DKPP+D Q + SH DE+RRA SYHSYSQSPPYD+QYEDRRYGK    LTRKPG
Sbjct: 121 YAGGNTSDKPPRDLQRIRSHEDETRRACSYHSYSQSPPYDFQYEDRRYGKQTNTLTRKPG 180

Query: 181 SDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQ 240
           SDRG  VGK++S + SP R++E++FEDRFANEGS SR+SDYSVSSGGDP R GA+SPNFQ
Sbjct: 181 SDRGLNVGKMASFICSPTRLNERVFEDRFANEGSVSRVSDYSVSSGGDPVRSGAESPNFQ 240

Query: 241 KDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGL 300
           KD  F SPP+Q SRD S       + +   P  +RTTSLGSMGSFDS SVS+KS NSG L
Sbjct: 241 KDIAF-SPPIQPSRDASLC----YQMILNCPSIQRTTSLGSMGSFDSLSVSIKSYNSGSL 295

Query: 301 TDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPET 360
            D+     QAAG P + +  FP S    ++  LDLF+ PV PE     APPIDLFQLP T
Sbjct: 296 LDIVAEAGQAAGNPQENMPAFPVS-SVSSHASLDLFKEPVAPEPASPMAPPIDLFQLPAT 354

Query: 361 S-AASVNMSEMSQASSVPSTNTYQPAQTSSPSSLNFFQITEQPSTAILNRNPQELSIPKN 419
           S A SV++ ++  ASS+   N YQP+QTS PS+L  +Q  +Q  T++  ++P   S+PKN
Sbjct: 355 SPAPSVDLFQVPPASSI---NLYQPSQTSLPSTLGSYQ--QQSVTSLDEKSPHS-SLPKN 408

Query: 420 EGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPS 479
           EGWATFD P   AS PG E+L+ ++ P+N GSS   DQ PS +TSMQWP FQNS  +  S
Sbjct: 409 EGWATFDGPQPIASTPGPENLTSSVGPSNAGSS-NFDQVPSLHTSMQWPPFQNSVDHSSS 467

Query: 480 PSSDPWSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNMQSWNA--FDDFT 537
              DPW G++H VQA                  GN          T+ Q+W+A  FDD  
Sbjct: 468 SVPDPWLGDVHSVQA-----------------TGN----------TSSQNWSAFEFDDSV 500

Query: 538 SHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQETNDDGNPRVASHDGPPNMTVPSQAD 597
           + +P EG K +SEP    Y PSPT DQ +  V Q+ N DG  R A +   P  + PS   
Sbjct: 501 AGIPLEGIKQSSEPQT-LYNPSPTADQLINCVLQDFNKDGIQRTAYNGVLPGPSEPSDIV 559

Query: 598 MGPSYNPSMFPLMMRTHATEHKSTNPFDFPCDSDLEQNNM 637
            GPSY PS  PL+  +HA +HKS NPFD P +SDLE +NM
Sbjct: 560 AGPSYTPSGHPLV--SHA-DHKSINPFDLPYESDLEPSNM 596

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255580246|ref|XP_002530953.1| HIV-1 rev binding protein, hrbl, putative [Ricinus communis] gi|223529468|gb|EEF31425.1| HIV-1 rev binding protein, hrbl, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296085867|emb|CBI31191.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359480998|ref|XP_003632552.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|307136134|gb|ADN33979.1| GTPase activating protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449437662|ref|XP_004136610.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Cucumis sativus] gi|449522163|ref|XP_004168097.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356514062|ref|XP_003525726.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Glycine max] Back     alignment and taxonomy information
>gi|356506188|ref|XP_003521869.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Glycine max] Back     alignment and taxonomy information
>gi|356573913|ref|XP_003555100.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Glycine max] Back     alignment and taxonomy information
>gi|334182402|ref|NP_001184942.1| putative ADP-ribosylation factor GTPase-activating protein AGD14 [Arabidopsis thaliana] gi|332190213|gb|AEE28334.1| putative ADP-ribosylation factor GTPase-activating protein AGD14 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query645
TAIR|locus:2125697628 AT4G32630 [Arabidopsis thalian 0.612 0.628 0.322 2.7e-45
TAIR|locus:2142115602 NIG "NSP (nuclear shuttle prot 0.584 0.626 0.355 1.5e-44
UNIPROTKB|D4A4Q8529 Agfg1 "Arf-GAP domain and FG r 0.158 0.192 0.413 1.9e-20
UNIPROTKB|P52594562 AGFG1 "Arf-GAP domain and FG r 0.158 0.181 0.413 2.3e-19
RGD|1310527561 Agfg1-ps1 "ArfGAP with FG repe 0.158 0.181 0.413 2.9e-19
UNIPROTKB|Q2TA45562 AGFG1 "Arf-GAP domain and FG r 0.158 0.181 0.413 3e-19
RGD|1560041560 Agfg1 "ArfGAP with FG repeats 0.158 0.182 0.413 6e-19
DICTYBASE|DDB_G0275571 930 DDB_G0275571 "Arf GTPase activ 0.186 0.129 0.424 6.3e-19
UNIPROTKB|B8ZZY2541 AGFG1 "Arf-GAP domain and FG r 0.158 0.188 0.413 1.1e-18
ZFIN|ZDB-GENE-040426-1520547 agfg1b "ArfGAP with FG repeats 0.162 0.191 0.420 1e-17
TAIR|locus:2125697 AT4G32630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 139/431 (32%), Positives = 212/431 (49%)

Query:    17 LMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEAL 76
             L+KLP NRRCINCNSLGPQYVC+ FWTFVC+ CSGIHREFTHRVKSVSM+KFT+ EV AL
Sbjct:    14 LLKLPENRRCINCNSLGPQYVCSTFWTFVCVNCSGIHREFTHRVKSVSMAKFTADEVSAL 73

Query:    77 QNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQG 136
             + GGN+RAR+IY K+WD  R   PD SN+ K+RDFI++VYVD+RY+     DK  +    
Sbjct:    74 RAGGNERARQIYFKEWDAHRDGYPDRSNIFKLRDFIRSVYVDKRYSSS---DKISQQKSD 130

Query:   137 LGSHLDESRRAXXXXXXXXXXXXXXXXEDRRY---GKLGAVLTRKPGSDRGHYVGKISSL 193
             +     ES++                 +  R    G+ G+   R    D+ H    ++  
Sbjct:   131 VTEDYRESKKTSAHVLGSRSLHSVDKSDIERSSAAGRSGSESLRFYFDDKNHKQQHVTHN 190

Query:   194 VHSPGRMSEQM-FE---DRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPP 249
               S G     + FE   DRF ++GS  R      S G    +    S N  KD   + P 
Sbjct:   191 PRSRGLPKSPIRFEIVDDRFRDDGSVKRYDARKDSRGSS--KSLDLSSN--KDMP-SFPI 245

Query:   250 VQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQ 309
             V+ + +++ +K   K+D    P   + T+     S +   +     +      VSE  D+
Sbjct:   246 VRHTSELNIVKVEKKKD----PVNNQMTA-----SSEKMEIPRSLIDD---VPVSELSDE 293

Query:   310 AAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETS--AASVNM 367
                  +   S  P S         +  EA +   +VPS  P  + ++L  TS  +++ N 
Sbjct:   294 GI---IKNSSEIPASLKTTEEPAPNSLEALLFGSSVPSVVPGTNNYELWNTSDISSTENY 350

Query:   368 SEMSQAS-SVPSTNTYQPAQTSSPSSLNFFQITEQPSTAIL--NRNPQELS-IPKNEGWA 423
             + ++  + ++P       +  +SP++ +    +  P   +   N N +E + +  N+G +
Sbjct:   351 TAVNLGTQTMPGIPDSVTSFATSPTTAHAHSGSSGPVVPVAPDNLNTKETATLANNQGPS 410

Query:   424 TFDTPPSAASI 434
              F    +  +I
Sbjct:   411 DFSMEQTTLAI 421
GO:0005634 "nucleus" evidence=ISM
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
TAIR|locus:2142115 NIG "NSP (nuclear shuttle protein)-interacting GTPase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|D4A4Q8 Agfg1 "Arf-GAP domain and FG repeat-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P52594 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1310527 Agfg1-ps1 "ArfGAP with FG repeats 1, pseudogene 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TA45 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1560041 Agfg1 "ArfGAP with FG repeats 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275571 DDB_G0275571 "Arf GTPase activating protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZZY2 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1520 agfg1b "ArfGAP with FG repeats 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RXE7AGD14_ARATHNo assigned EC number0.47270.88060.8751yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query645
PLN03131705 PLN03131, PLN03131, hypothetical protein; Provisio 0.0
PLN03119648 PLN03119, PLN03119, putative ADP-ribosylation fact 1e-152
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 6e-41
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 7e-22
COG5347319 COG5347, COG5347, GTPase-activating protein that r 1e-13
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 2e-05
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  684 bits (1765), Expect = 0.0
 Identities = 371/657 (56%), Positives = 440/657 (66%), Gaps = 49/657 (7%)

Query: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRV 60
           MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQ+VCTNFWTF+CMTCSGIHREFTHRV
Sbjct: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFTHRV 60

Query: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120
           KSVSMSKFTSQ+VEALQNGGNQRAREIYLKDWD QRQRLPDNS V+K+R+FIK++YVD++
Sbjct: 61  KSVSMSKFTSQDVEALQNGGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKK 120

Query: 121 YAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPG 180
           YAGGKT DKPP+D Q + SH DE+RRA SYHSYSQSPPYD+QYEDRRYGK   +LTRKPG
Sbjct: 121 YAGGKTHDKPPRDLQRIRSHEDETRRACSYHSYSQSPPYDFQYEDRRYGKQAGILTRKPG 180

Query: 181 SDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQ 240
           SDRG  VGK++S + SP R++++MFEDRFANEGS S +SDYSVSSGGD  R GA+SPNFQ
Sbjct: 181 SDRGLNVGKMASFICSPTRLNDRMFEDRFANEGSVSGVSDYSVSSGGDLVRSGAESPNFQ 240

Query: 241 KDAGFNSPPVQLSRDVSS-----------LKANFKRDVDGIPHPKRTTSLGSMGSFDSNS 289
           KD  F SPP+Q  +D+               A  K+  +G PH +R+ SLGS+GSFDS S
Sbjct: 241 KDIAF-SPPIQPPKDILGEDVQQRRIDLFSAALCKQGAEGCPHIQRSASLGSIGSFDSLS 299

Query: 290 VSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTA 349
           VS+KS NSG L D+    +QAAG   DK+  FP+  G  ++  LD F+APV PE     A
Sbjct: 300 VSIKSFNSGSLADIVAEAEQAAGNHQDKMPAFPRMAGSGSHASLDHFKAPVAPEAAAPMA 359

Query: 350 PPIDLFQLPETS-AASVNMSEMSQASSVPSTNTYQPAQTSSPSSLNFFQ-ITEQPSTAIL 407
           PPIDLFQLP TS A  V++ E+      P+ N YQP QTS PSS++ F  IT+Q S   L
Sbjct: 360 PPIDLFQLPATSPAPPVDLFEIPPLDPAPAINAYQPPQTSLPSSIDLFGGITQQQSINSL 419

Query: 408 NRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQW 467
           +    ELSIPKNEGWATFD     AS PG E+L+   +  +   S   DQ PS +  MQW
Sbjct: 420 DEKSPELSIPKNEGWATFDGIQPIASTPGNENLTPFSIGPSMAGSANFDQVPSLDKGMQW 479

Query: 468 PAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNM 527
           P FQNS     +    PW G+LH V+A                 P N          T+ 
Sbjct: 480 PPFQNSSDEESASGPAPWLGDLHNVEA-----------------PDN----------TSA 512

Query: 528 QSWNAF--DDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAI-VSQETNDDGNPRVASH 584
           Q+WNAF  DD  + +P EG K +SEP   A    PT DQ +     ++ N DG  R A H
Sbjct: 513 QNWNAFEFDDSVAGIPLEGIKQSSEPQT-AANMPPTADQLIGCKALEDFNKDGIKRTAPH 571

Query: 585 --DGPPNMTVPSQADMGPSYNPSMFPLM--MRTHATEHKSTNPFDFPCDSDLEQNNM 637
                P +  PS     PSY P   P+M   ++HA +HKS NPFD P DSDLE  NM
Sbjct: 572 GQGELPGLDEPSDILAEPSYTPPAHPIMEHAQSHANDHKSINPFDLPYDSDLEPGNM 628

Length = 705
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 645
PLN03131705 hypothetical protein; Provisional 100.0
PLN03119648 putative ADP-ribosylation factor GTPase-activating 100.0
KOG0702524 consensus Predicted GTPase-activating protein [Sig 100.0
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 99.96
KOG0704386 consensus ADP-ribosylation factor GTPase activator 99.95
PLN03114395 ADP-ribosylation factor GTPase-activating protein 99.93
KOG0706454 consensus Predicted GTPase-activating protein [Sig 99.91
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.89
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.79
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.62
KOG0818669 consensus GTPase-activating proteins of the GIT fa 99.6
PLN03131705 hypothetical protein; Provisional 96.81
PLN03119648 putative ADP-ribosylation factor GTPase-activating 95.38
KOG0702524 consensus Predicted GTPase-activating protein [Sig 94.52
KOG0521785 consensus Putative GTPase activating proteins (GAP 88.53
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.9e-166  Score=1343.01  Aligned_cols=613  Identities=59%  Similarity=0.961  Sum_probs=587.0

Q ss_pred             CCchhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCCCceeeeecCCCCHHHHHHHHhcC
Q 006431            1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGG   80 (645)
Q Consensus         1 M~srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LGhrVKSItLDkWt~eEVe~Lq~gG   80 (645)
                      |++||++|+++++|++|+++|+|++|||||+++|+|||++||||||++|+||||+||||||||+||+|+++||++|+.+|
T Consensus         1 m~SkkqqErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLghRVKSVTLD~WtdeEV~~Mk~gG   80 (705)
T PLN03131          1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFTHRVKSVSMSKFTSQDVEALQNGG   80 (705)
T ss_pred             CcchHHHHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccCcccccccCCCCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCCcccCCCCCCCchHHHHHHHHHHHhhccccCCCCCCCCCCCccCCCCCccccccCCCCCCCCCCCCCc
Q 006431           81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYD  160 (645)
Q Consensus        81 N~rANeiwea~~~~~r~~~P~~sd~~~rreFIraKY~eKrF~~~k~~D~Ppr~~q~l~~~~~e~rRsssy~S~sQSpp~d  160 (645)
                      |++||++||++|+..+.++|...+.+++|+|||+|||+|||+.....|+|+++.+.++.++.++||.++||+++|||||+
T Consensus        81 N~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~~~s~d~pprd~q~~r~~e~e~rr~~syh~~SqSPpY~  160 (705)
T PLN03131         81 NQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGGKTHDKPPRDLQRIRSHEDETRRACSYHSYSQSPPYD  160 (705)
T ss_pred             cHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhcCCCCCCCchhhhhhhcccccccccccccCCCcCCCcc
Confidence            99999999999998877888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhccccccccccCCCCCCCCCCCCCCCCcccCCCCCchhhhhcccccCCCccccccccccCCCCCCCCCCCCCCcc
Q 006431          161 YQYEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQ  240 (645)
Q Consensus       161 ~~~Edrr~~k~~~~ltRkPgsd~~~~~gk~ss~~~sP~r~s~~~~~DRfa~e~s~~r~sdfs~s~~g~~~k~~~~sp~~~  240 (645)
                      |+||||||||+...++|+||+++++|.|||++|++||+|+.+||+||||+||++++|++||+++++|+++|.+.+||+++
T Consensus       161 ~~yedrRygk~~~~~~R~pg~d~~~~~~k~~~~~~SP~r~~d~~~eDrf~ne~~~~r~~d~s~ss~~~~~r~~~~SP~~~  240 (705)
T PLN03131        161 FQYEDRRYGKQAGILTRKPGSDRGLNVGKMASFICSPTRLNDRMFEDRFANEGSVSGVSDYSVSSGGDLVRSGAESPNFQ  240 (705)
T ss_pred             cccccccccccccccccCCccccccccccccccccCchhhhhhhhhcccccCCCCcccccccccccccccccCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCcccccccccccccCC-----------CCCCCCCCCCccccCCCccccCCCccccccccCCCCccCCCCCcc
Q 006431          241 KDAGFNSPPVQLSRDVSSLKANFK-----------RDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQ  309 (645)
Q Consensus       241 Kd~~~ssp~v~~~~~i~~~~~~~~-----------~~~~~~~~~qrt~ss~S~~s~~~~~~~~k~~~s~sl~d~~~~~~~  309 (645)
                      |++. +||||+++|+|||+.++..           +.++|++++|||+|+||+||+||+++++|++||+|||||.+|+++
T Consensus       241 k~~~-~Sp~v~p~r~ilg~n~~~~~v~~~s~~~~~~~~~~~~~~Qrt~Ssgs~gS~dg~s~s~Ks~~s~sL~D~~~e~~~  319 (705)
T PLN03131        241 KDIA-FSPPIQPPKDILGEDVQQRRIDLFSAALCKQGAEGCPHIQRSASLGSIGSFDSLSVSIKSFNSGSLADIVAEAEQ  319 (705)
T ss_pred             cccC-CCCCcccchhhccccccccccCCCcccccccccccccccccccccCcccccCCCccceeecccccccccccCccc
Confidence            9975 5789988999999765544           457999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCcccccCCCCCCCCcCccccCCCCCCCCCCCCCCCCCCccCCCccccc-cccccccccCCCCCCCCCCCCCCCC
Q 006431          310 AAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAA-SVNMSEMSQASSVPSTNTYQPAQTS  388 (645)
Q Consensus       310 ~~~~~q~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~dlf~~p~~~~~-~v~~f~~~~~~~~~s~~~~q~~q~~  388 (645)
                      +++++|.|+.+.++..+...+.++|+|++||+|+++..++++|||||+|+|+.| +|||||-+++..++++|.+|+.||+
T Consensus       320 ~~~~~q~k~~~~~~~~~~~~~~s~d~f~~~v~p~~~~~~a~pIDLFqlp~ts~a~~vdlf~~s~l~~~p~~n~~q~~qts  399 (705)
T PLN03131        320 AAGNHQDKMPAFPRMAGSGSHASLDHFKAPVAPEAAAPMAPPIDLFQLPATSPAPPVDLFEIPPLDPAPAINAYQPPQTS  399 (705)
T ss_pred             cccccccccCCccccccccccccccccccccccccccccCCchhhhhccCCCCCCcccccccCcccCCCccccCCCCccc
Confidence            999999999999999999999999999999999999999999999999999988 9999999999999999999999999


Q ss_pred             CCCCcccc-cccCCCccccccCCCCCCCCCCCCCcccccCCCCCCCCCCccCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 006431          389 SPSSLNFF-QITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQW  467 (645)
Q Consensus       389 ~~~~~d~f-~~~~~~~~~~~~~~~~~~~~p~n~gwatfd~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (645)
                      ++++|||| +|+||++++++|++++||++||||||||||+++.++|++|++||+..+|+.....+.+||.++++.++|||
T Consensus       400 ~p~~~dlfag~~qqq~~~s~~~~~~~~s~pknegwa~fd~~~p~~s~~~~~n~t~~~v~~~~~~~~~~d~v~~~~~~~q~  479 (705)
T PLN03131        400 LPSSIDLFGGITQQQSINSLDEKSPELSIPKNEGWATFDGIQPIASTPGNENLTPFSIGPSMAGSANFDQVPSLDKGMQW  479 (705)
T ss_pred             CCccccccccccccCccccccccCcccCCccccCcccccCCCcccccCCcccccccccccccccCcchhhcccccccccc
Confidence            99999999 99999999999999999999999999999999988999999999888999776456799999999999999


Q ss_pred             CcccCCCCCCCCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCcccccccccccccccc--cccCCCCCCCC
Q 006431          468 PAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNMQSWNAFD--DFTSHLPSEGF  545 (645)
Q Consensus       468 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~q~WnAF~--ds~~~~~~~~~  545 (645)
                      |+|+++.++.+                          +.||++|.+++||||+|.. +++|+||||+  |+++++||+++
T Consensus       480 Pp~~~~~~~~s--------------------------~s~~~pW~~~~~~V~~~~~-~~~q~WnAF~~~ds~~~~~l~~~  532 (705)
T PLN03131        480 PPFQNSSDEES--------------------------ASGPAPWLGDLHNVEAPDN-TSAQNWNAFEFDDSVAGIPLEGI  532 (705)
T ss_pred             CCCcccccccc--------------------------cccCCcccccchhcccCCc-cCccccccccccccccccccccc
Confidence            99998877553                          4577899999999999986 9999999999  99999999999


Q ss_pred             CCCCCCcccCCCCCCCCCccccc-cccccCCCCCCcccCCCC--CCCCCCCCCCccCCCCCCCCC--ccccccccccCCC
Q 006431          546 KPNSEPHVDAYMPSPTPDQYLAI-VSQETNDDGNPRVASHDG--PPNMTVPSQADMGPSYNPSMF--PLMMRTHATEHKS  620 (645)
Q Consensus       546 ~~~~~~~~~~~~~~~t~~~~~~~-~~q~~~~d~~~~~ap~~~--~~~~~~ps~~~~gp~~~~~~~--~g~~~~~~~~~ks  620 (645)
                      ++++++|++++++++.+ ||+++ ++||+++||+||+||+|+  +++|++|+.+|+||+|.|+++  ||++++|+++|||
T Consensus       533 ~~~s~~q~~~~~~~t~~-q~~~~~~~~d~~~d~~~r~~p~~~~~~~g~~~~~~~~~~ps~~~~~~~~~~~~~s~~~~~ks  611 (705)
T PLN03131        533 KQSSEPQTAANMPPTAD-QLIGCKALEDFNKDGIKRTAPHGQGELPGLDEPSDILAEPSYTPPAHPIMEHAQSHANDHKS  611 (705)
T ss_pred             cccccccccccCCCCcc-cccccccccccccccccccCCCCCcCCCCCCCCCccccCCCCCccccccccccccccCccCC
Confidence            99999988766655555 99999 999999999999999999  999999999999999999999  9999999999999


Q ss_pred             CCCCCCCCCCCCCCCCcccccc
Q 006431          621 TNPFDFPCDSDLEQNNMVWPRF  642 (645)
Q Consensus       621 ~NPFDlp~dsd~e~~nmf~~~~  642 (645)
                      +||||||||||+|++|||||+-
T Consensus       612 ~npfdl~~dsd~~~~~mf~d~s  633 (705)
T PLN03131        612 INPFDLPYDSDLEPGNMFLDMS  633 (705)
T ss_pred             CCCcCCccccccCcccceeehH
Confidence            9999999999999999999973

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query645
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 1e-18
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 4e-18
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 1e-10
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 2e-10
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 4e-08
3lvq_E497 The Crystal Structure Of Asap3 In Complex With Arf6 9e-08
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 1e-07
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 1e-07
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 1e-07
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 2e-07
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 3e-07
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 3e-07
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 1e-06
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 3e-05
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 3e-05
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 4e-05
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 3e-04
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 8e-04
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure 
Iteration: 1

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
Query: 20  LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQ 77
           LP NR+C +C+  GP YV     +FVC +CSG  R     HRVKS+SM+ FT QE+E LQ
Sbjct: 17  LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQ 76
Query: 78  NGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 121
             GN+  ++I+L  +D +   +PD  +  KV++F++  Y  +R+
Sbjct: 77  KHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 120
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query645
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 2e-51
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 5e-27
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 1e-26
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 3e-26
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 5e-26
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 2e-25
2owa_A138 Arfgap-like finger domain containing protein; zinc 8e-24
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 3e-23
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 1e-22
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 4e-22
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 2e-19
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 2e-19
3o47_A329 ADP-ribosylation factor GTPase-activating protein 1e-17
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 7e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
 Score =  173 bits (439), Expect = 2e-51
 Identities = 52/139 (37%), Positives = 83/139 (59%), Gaps = 8/139 (5%)

Query: 3   SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF--THRV 60
            RK+EE++ K++R +  LP NR+C +C+  GP YV     +FVC +CSG  R     HRV
Sbjct: 5   KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRV 64

Query: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120
           KS+SM+ FT QE+E LQ  GN+  ++I+L  +D +   +PD  +  KV++F++  Y  +R
Sbjct: 65  KSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKR 124

Query: 121 YAGGKTPDKPPKDTQGLGS 139
           +        PP+  + + S
Sbjct: 125 WY------VPPEQAKVVAS 137
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query645
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 100.0
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 99.98
2owa_A138 Arfgap-like finger domain containing protein; zinc 99.97
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 99.96
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 99.96
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.95
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 99.95
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.95
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 99.94
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.94
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.92
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 81.8
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
Probab=100.00  E-value=7.1e-39  Score=298.76  Aligned_cols=122  Identities=40%  Similarity=0.758  Sum_probs=115.2

Q ss_pred             chhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC--CceeeeecCCCCHHHHHHHHhcC
Q 006431            3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGG   80 (645)
Q Consensus         3 srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG--hrVKSItLDkWt~eEVe~Lq~gG   80 (645)
                      +|+++|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+||  |+||||+||+|++++|++|+.+|
T Consensus         5 ~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~~G   84 (140)
T 2olm_A            5 KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHG   84 (140)
T ss_dssp             HHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHHhc
Confidence            4688999999999999999999999999999999999999999999999999999  69999999999999999999999


Q ss_pred             hHHHHHHHhhcCCcccCCCCCCCchHHHHHHHHHHHhhccccCC
Q 006431           81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG  124 (645)
Q Consensus        81 N~rANeiwea~~~~~r~~~P~~sd~~~rreFIraKY~eKrF~~~  124 (645)
                      |.++|++||++++....+.|+..+.+.+++||++||++|+|+..
T Consensus        85 N~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~  128 (140)
T 2olm_A           85 NEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP  128 (140)
T ss_dssp             HHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCC
T ss_pred             cHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCC
Confidence            99999999999987666778777788899999999999999865
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 645
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 3e-33
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  121 bits (305), Expect = 3e-33
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 11  EKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSK 67
           ++II  + ++  N  C +C +  P ++ TN     C+ CSGIHRE      R++S+++  
Sbjct: 3   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 62

Query: 68  FTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYA 122
             + E+   +N GN    EI       +    P+  S++   +D+I   Y++RRYA
Sbjct: 63  LGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYA 118

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query645
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-37  Score=280.05  Aligned_cols=116  Identities=29%  Similarity=0.540  Sum_probs=106.0

Q ss_pred             HHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeeeecCCCCHHHHHHHHhcChHHHHH
Q 006431           10 NEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGNQRARE   86 (645)
Q Consensus        10 nekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSItLDkWt~eEVe~Lq~gGN~rANe   86 (645)
                      ++++|++|++.|+|++|||||+.+|+|||+|||||||++|||+||+||   |+||||+||+|+++||++|+.+||.++|+
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~   81 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   81 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHH
Confidence            688999999999999999999999999999999999999999999999   59999999999999999999999999999


Q ss_pred             HHhhcCCcccCCCCC-CCchHHHHHHHHHHHhhccccCCC
Q 006431           87 IYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGGK  125 (645)
Q Consensus        87 iwea~~~~~r~~~P~-~sd~~~rreFIraKY~eKrF~~~k  125 (645)
                      +||++++.....+|. .++...+++||++||++|+|+.++
T Consensus        82 ~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k~  121 (122)
T d1dcqa2          82 IMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK  121 (122)
T ss_dssp             HHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             HHHhhCCcccCcCCCCCccHHHHHHHHHHHHHhCcccccc
Confidence            999999865444444 455667888999999999999764